BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015023
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRR 76
D YE+L VSR +SD+++K AYR+LALK+HPDKN + P A E FK + +Y++LS+PEKR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRK 66
Query: 77 HYDNAG 82
YD G
Sbjct: 67 QYDQFG 72
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKR 75
+D Y+ L ++R +SD+EIK AYR+ AL+YHPDKN P A E FKE+A +Y +LSDP KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 76 RHYDNAGFEAIDAEG 90
+D G E + G
Sbjct: 62 EIFDRYGEEGLKGSG 76
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y+VL V D+SD E+K AYRK+ALK+HPDK NP+ AE FK+++ +Y +LSD +KR+ Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK---NPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 79 DNAGFE 84
D G E
Sbjct: 68 DQGGEE 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 8 GSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAE-LFKEVAYSY 66
GSS + D YEVL V R +S + IK AYRKLALK+HPDKN N E AE FK+VA +Y
Sbjct: 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAY 60
Query: 67 SILSDPEKRRHYDNAG 82
+LSD +KR YD G
Sbjct: 61 EVLSDAKKRDIYDRYG 76
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y VL + ++++ +IK +YRKLALKYHPDKN NPEAA+ FKE+ +++IL+D KR Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 79 DNAG 82
D G
Sbjct: 80 DKYG 83
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEK 74
++D YE+L VS+ + ++EI+ AY++LA+KYHPD+N + EA FKE+ +Y +L+D +K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 75 RRHYDNAGFEAIDAEG 90
R YD G A + G
Sbjct: 62 RAAYDQYGHAAFEQGG 77
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEK 74
++D YE+L VS+ + ++EI+ AY++LA+KYHPD+N + EA FKE+ +Y +L+D +K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 75 RRHYDNAGFEAID 87
R YD G A +
Sbjct: 62 RAAYDQYGHAAFE 74
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEK 74
++D YE+L VS+ + ++EI+ AY++LA+KYHPD+N + EA FKE+ +Y +L+D +K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 75 RRHYDNAGFEAID 87
R YD G A +
Sbjct: 62 RAAYDQYGHAAFE 74
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 8 GSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAE-LFKEVAYSY 66
GSS + + YEVL V +S ++IK AYRKLAL++HPDKN N E AE FK V+ +Y
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 67 SILSDPEKRRHYDNAGFEA 85
+LSD +KR YD AG ++
Sbjct: 61 EVLSDSKKRSLYDRAGCDS 79
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAE-LFKEVAYSYSILSDPEKRRH 77
YE+L V R +S +IK AYR+ AL++HPDKN N E AE FKEVA +Y +LSD KR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 78 YDNAGFEAIDAEG 90
YD G E + G
Sbjct: 65 YDRYGREGLTGTG 77
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y+VL V +++ +E+K AYRKLALKYHPDK NP E FK+++ +Y +LSD +KR Y
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDK---NPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 79 DNAG 82
D G
Sbjct: 66 DKGG 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRR 76
DPY VL VSR +S +IK AY+KLA ++HPDKN +P A + F +++ +Y ILS+ EKR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 77 HYDNAG 82
+YD+ G
Sbjct: 77 NYDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRR 76
D Y++L V R++S +EIK AY +LA KYHPD N +P+A E F ++A +Y +LSD KR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 77 HYDNAG 82
YD G
Sbjct: 68 QYDAYG 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y++L V + +S+++IK A+ KLA+KYHPDKN S P+A F+E+A +Y LSD +R+ Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEY 68
Query: 79 DNAGFEAI 86
D G A
Sbjct: 69 DTLGHSAF 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y++L VS +++QE+K YRK ALKYHPDK + E FKE++ ++ IL+DP+KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 79 DNAGFEA 85
D G EA
Sbjct: 68 DQYGLEA 74
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y +L VS+ +S +EI+ A++KLALK HPDKN +NP A F ++ +Y +L D + R+ Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 79 DNAG 82
D G
Sbjct: 84 DKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y +L VS+ +S +EI+ A++KLALK HPDKN +NP A F ++ +Y +L D + R+ Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 79 DNAG 82
D G
Sbjct: 65 DKYG 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN----PEAAELFKEVAYSYSILS 70
+RD Y++L V R++ QEI AYRKLAL++HPD N N +A + F ++A + +LS
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLS 439
Query: 71 DPEKRRHYDN 80
DPE R+ +D+
Sbjct: 440 DPEMRKKFDD 449
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN----PEAAELFKEVAYSYSILS 70
+RD Y++L V R++ QEI AYRKLAL++HPD N N +A + F ++A + +LS
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLS 439
Query: 71 DPEKRRHYDN 80
DPE R+ +D+
Sbjct: 440 DPEXRKKFDD 449
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKR 75
+D Y ++ V + IKTAYR+LA KYHPD + P+A FKEVA ++ +LSD ++R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRR 63
Query: 76 RHYDN 80
YD
Sbjct: 64 AEYDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKR 75
+D Y +L V + IKTAYR+LA KYHPD + N +A FK++A ++ +L D ++R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRR 86
Query: 76 RHYDN 80
YD
Sbjct: 87 AEYDQ 91
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 19 YEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78
Y++L V ++ +IK AY + YHPD+N + EAAE F ++ +Y +L RR Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 79 DNAGFEAIDAEG 90
D D G
Sbjct: 80 DRGLLSDEDLRG 91
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAEL------FKEVAYSY 66
T+++D Y +L ++ ++K Y+KL L YHPDK ++ A + F E+ ++
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 67 SILSDPEKRRHYD 79
IL + E ++ YD
Sbjct: 73 KILGNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN------PEAAELFKEVAYSYSI 68
++D Y +L ++ ++K Y+KL L YHPDK ++ E + F E+ ++ I
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 69 LSDPEKRRHYDNAGFEAIDAEGMDMEIDLSNLGTVN 104
L + E +R YD E DL N+G V+
Sbjct: 69 LGNEETKREYDLQRCED----------DLRNVGPVD 94
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRR 76
D Y +L SS ++I ++ AL+ HPDK+ NP+A E F+++ + IL++ E R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 77 HYDN 80
YD+
Sbjct: 81 RYDH 84
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 19 YEVLCVSRDSSD-QEIKTAYRKLALKYHPDKNVSNPE----AAELFKEVAYSYSILSDPE 73
Y+VL V+R+ D Q++ AYR LA K+HPD+ V N E A E F+ +A +Y L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 74 KRRHYD 79
+ +YD
Sbjct: 77 AKTNYD 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 11 APTIRR-----DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYS 65
A IRR D +++L V +S E+ AYRKLA+ HPDK V+ P + + FK V +
Sbjct: 17 ADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNA 75
Query: 66 YSIL 69
+ L
Sbjct: 76 RTAL 79
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 123 SANVLEEALNGT-----VTVRPLPI--GTSVSGKVEKQCAHFFGVTI-NDQQAE 168
SAN L AL+G +TVRPLP G V+GK +CA + TI N QAE
Sbjct: 463 SANTL--ALSGGPATEGITVRPLPGTNGALVTGKQSGRCADIYNNTITNGTQAE 514
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 54 EAAELFKEVAYSYSILSDPEK--------RRHYDNAGFEAI---DAEGMDMEIDLSNLGT 102
+ E E+ +S+L+DPE+ RR+ G E + DA+GM E DL G
Sbjct: 34 DVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGA 93
Query: 103 VN-TMFAALFSKLGVPIKTTISANVLEEAL 131
+N T F L +L P + LE+AL
Sbjct: 94 LNQTEFCVLMVRLS-PEMMEDAETWLEKAL 122
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 30 DQEIKTAYRKLALKYHPDKNVSNPEAA-ELFKEV 62
+ E K R+L LK+HPDKN N + A E+FK +
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP
BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE T
INSERT
Length = 1022
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 279 IEALCAKSYEDNSQKLKDIEAQILRK-RKELREFEIEYRKALARFQE---ATNRYSQEKQ 334
I+ C KSY N+ +L ++ ++++K ++ REFE + ++L F+E A+ R + + +
Sbjct: 952 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE-KMNQSLRLFREVCLASERSTVDAE 1010
Query: 335 SVDELL 340
+V +LL
Sbjct: 1011 AVHKLL 1016
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 280 EALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEY---RKALARFQEATNRYSQEKQSV 336
EAL + D+ ++LK IEA+I + +E+ + E+ R+ L + +EA +R + ++ +
Sbjct: 418 EALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 477
Query: 337 DELLKQRD 344
+ +Q D
Sbjct: 478 ELAERQYD 485
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 280 EALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEY---RKALARFQEATNRYSQEKQSV 336
EAL + D+ ++LK IEA+I + +E+ + E+ R+ L + +EA +R + ++ +
Sbjct: 281 EALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 340
Query: 337 DELLKQRD 344
+ +Q D
Sbjct: 341 ELAERQYD 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,510,229
Number of Sequences: 62578
Number of extensions: 399305
Number of successful extensions: 907
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 42
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)