Query 015023
Match_columns 414
No_of_seqs 246 out of 2191
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 5E-35 1.7E-39 291.1 3.8 210 13-288 25-252 (329)
2 1nlt_A Protein YDJ1, mitochond 99.9 2.9E-24 9.8E-29 206.0 10.0 155 114-287 10-181 (248)
3 1bq0_A DNAJ, HSP40; chaperone, 99.9 4.9E-23 1.7E-27 171.8 5.9 75 15-89 2-76 (103)
4 1hdj_A Human HSP40, HDJ-1; mol 99.8 1.2E-21 4E-26 154.8 4.6 75 14-89 1-75 (77)
5 2dn9_A DNAJ homolog subfamily 99.8 1.3E-21 4.5E-26 155.2 4.0 73 13-85 4-76 (79)
6 2ej7_A HCG3 gene; HCG3 protein 99.8 2.5E-21 8.4E-26 154.7 4.7 76 11-86 4-80 (82)
7 2ctw_A DNAJ homolog subfamily 99.8 4.7E-21 1.6E-25 161.5 4.9 80 8-87 9-88 (109)
8 2cug_A Mkiaa0962 protein; DNAJ 99.8 5.4E-21 1.8E-25 155.0 4.6 78 6-84 7-84 (88)
9 2yua_A Williams-beuren syndrom 99.8 6.2E-21 2.1E-25 158.0 4.7 73 10-82 11-83 (99)
10 2ctr_A DNAJ homolog subfamily 99.8 8.7E-21 3E-25 153.7 4.6 76 13-89 4-79 (88)
11 2dmx_A DNAJ homolog subfamily 99.8 8.1E-21 2.8E-25 155.0 3.9 79 11-89 4-83 (92)
12 2ctp_A DNAJ homolog subfamily 99.8 8E-21 2.7E-25 150.4 3.8 72 13-85 4-75 (78)
13 2ctq_A DNAJ homolog subfamily 99.8 1E-20 3.4E-25 160.2 3.0 75 13-87 17-91 (112)
14 2och_A Hypothetical protein DN 99.8 2.8E-20 9.5E-25 145.5 3.6 67 14-83 6-72 (73)
15 2lgw_A DNAJ homolog subfamily 99.8 2.3E-20 7.8E-25 154.7 2.9 74 16-89 2-76 (99)
16 2o37_A Protein SIS1; HSP40, J- 99.8 4.4E-20 1.5E-24 150.9 2.7 73 14-89 6-78 (92)
17 1wjz_A 1700030A21RIK protein; 99.8 5.7E-20 1.9E-24 150.4 3.4 70 13-82 13-88 (94)
18 3apq_A DNAJ homolog subfamily 99.7 2.5E-19 8.5E-24 165.7 1.8 74 16-89 2-75 (210)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 6.8E-19 2.3E-23 148.1 1.2 73 11-83 10-86 (109)
20 2ys8_A RAB-related GTP-binding 99.7 7.5E-18 2.6E-22 137.1 4.3 62 15-77 26-87 (90)
21 2l6l_A DNAJ homolog subfamily 99.7 8.5E-18 2.9E-22 149.9 3.6 70 14-83 8-83 (155)
22 1gh6_A Large T antigen; tumor 99.7 4.7E-18 1.6E-22 144.2 -1.1 65 15-83 7-73 (114)
23 1iur_A KIAA0730 protein; DNAJ 99.6 4E-17 1.4E-21 132.3 3.0 70 9-78 9-79 (88)
24 1faf_A Large T antigen; J doma 99.6 3.2E-17 1.1E-21 130.3 1.8 67 15-86 10-78 (79)
25 3hho_A CO-chaperone protein HS 99.6 5.9E-17 2E-21 147.3 2.4 67 15-81 3-76 (174)
26 2pf4_E Small T antigen; PP2A, 99.6 1.2E-17 4.1E-22 151.2 -2.2 65 15-83 10-76 (174)
27 1n4c_A Auxilin; four helix bun 99.6 1.2E-16 4.2E-21 145.5 3.2 65 14-78 115-182 (182)
28 3apo_A DNAJ homolog subfamily 99.6 5.2E-17 1.8E-21 177.4 -0.4 79 11-89 16-94 (780)
29 3bvo_A CO-chaperone protein HS 99.6 2.4E-16 8.2E-21 147.0 2.9 67 14-80 41-114 (207)
30 2qwo_B Putative tyrosine-prote 99.6 2.2E-16 7.7E-21 128.7 2.0 56 16-71 33-91 (92)
31 1fpo_A HSC20, chaperone protei 99.6 1.6E-16 5.5E-21 144.0 1.2 66 17-82 2-74 (171)
32 3ag7_A Putative uncharacterize 99.6 6.2E-16 2.1E-20 129.5 1.9 60 13-73 38-104 (106)
33 3uo3_A J-type CO-chaperone JAC 99.5 1.3E-15 4.3E-20 139.3 0.8 67 13-82 8-81 (181)
34 2guz_A Mitochondrial import in 99.5 3.6E-15 1.2E-19 115.9 2.4 59 14-76 12-71 (71)
35 3agx_A DNAJ homolog subfamily 99.4 1E-13 3.4E-18 126.7 6.0 108 115-287 2-112 (181)
36 2q2g_A HSP40 protein, heat sho 99.2 1.2E-11 4.3E-16 112.6 6.2 75 210-288 36-113 (180)
37 2ctt_A DNAJ homolog subfamily 99.1 5.7E-12 1.9E-16 104.8 1.2 93 115-222 1-103 (104)
38 1c3g_A Heat shock protein 40; 99.0 9.6E-11 3.3E-15 105.8 3.6 70 214-287 34-106 (170)
39 2y4t_A DNAJ homolog subfamily 98.9 4.5E-10 1.5E-14 111.2 4.7 66 15-80 381-449 (450)
40 2guz_B Mitochondrial import in 98.4 1.6E-07 5.4E-12 71.4 3.4 51 17-71 5-58 (65)
41 1nlt_A Protein YDJ1, mitochond 98.3 5.1E-07 1.7E-11 86.1 6.6 125 142-293 27-178 (248)
42 1exk_A DNAJ protein; extended 97.9 8.1E-06 2.8E-10 63.8 4.7 65 136-214 12-78 (79)
43 1c3g_A Heat shock protein 40; 95.6 0.015 5.1E-07 51.9 5.6 67 227-293 35-103 (170)
44 2q2g_A HSP40 protein, heat sho 94.9 0.024 8.1E-07 51.0 4.8 66 228-293 42-109 (180)
45 3lz8_A Putative chaperone DNAJ 94.8 0.051 1.7E-06 53.5 7.2 65 229-293 182-248 (329)
46 3agx_A DNAJ homolog subfamily 94.6 0.039 1.3E-06 49.6 5.4 64 229-293 44-109 (181)
47 3lcz_A YCZA, inhibitor of trap 94.1 0.026 8.9E-07 40.7 2.4 24 191-214 13-37 (53)
48 3i38_A Putative chaperone DNAJ 93.0 0.17 5.8E-06 41.7 6.0 21 218-238 40-60 (109)
49 3i38_A Putative chaperone DNAJ 92.7 0.011 3.7E-07 49.0 -1.7 28 260-287 3-31 (109)
50 1exk_A DNAJ protein; extended 92.1 0.071 2.4E-06 40.9 2.4 45 149-212 9-62 (79)
51 2bx9_A Anti-trap, AT, tryptoph 90.5 0.14 4.8E-06 36.9 2.4 22 191-212 13-35 (53)
52 1xao_A YDJ1, mitochondrial pro 89.7 0.48 1.6E-05 39.6 5.5 21 218-238 36-58 (121)
53 1xao_A YDJ1, mitochondrial pro 89.1 0.037 1.3E-06 46.5 -1.9 25 263-287 1-26 (121)
54 2ctt_A DNAJ homolog subfamily 87.9 0.36 1.2E-05 39.1 3.4 21 191-211 49-78 (104)
55 3lcz_A YCZA, inhibitor of trap 85.0 0.24 8.3E-06 35.6 0.8 24 177-200 13-36 (53)
56 2pzi_A Probable serine/threoni 83.9 0.43 1.5E-05 50.8 2.4 46 15-68 628-675 (681)
57 2bx9_A Anti-trap, AT, tryptoph 76.8 1 3.4E-05 32.3 1.6 10 191-200 27-36 (53)
58 3htk_A Structural maintenance 73.0 21 0.00073 25.4 8.1 51 292-342 5-55 (60)
59 3pmq_A Decaheme cytochrome C M 70.2 0.094 3.2E-06 56.2 -7.5 40 120-160 169-220 (669)
60 2eqb_B RAB guanine nucleotide 70.0 21 0.00073 28.6 8.0 58 283-340 3-60 (97)
61 3hnw_A Uncharacterized protein 61.5 33 0.0011 29.1 8.2 54 289-342 72-125 (138)
62 4h22_A Leucine-rich repeat fli 60.2 31 0.0011 27.9 7.3 56 296-351 34-92 (103)
63 4ani_A Protein GRPE; chaperone 52.1 35 0.0012 31.2 7.1 45 292-336 59-103 (213)
64 3na7_A HP0958; flagellar bioge 46.5 67 0.0023 29.7 8.4 14 336-349 159-172 (256)
65 3oa7_A Head morphogenesis prot 45.3 25 0.00086 31.7 4.9 59 287-345 11-69 (206)
66 1ltl_A DNA replication initiat 40.9 23 0.00077 33.4 4.2 18 27-44 8-25 (279)
67 3bas_A Myosin heavy chain, str 37.5 83 0.0028 24.4 6.4 18 298-315 13-30 (89)
68 3a7p_A Autophagy protein 16; c 37.4 1.5E+02 0.0051 25.6 8.3 52 290-341 80-131 (152)
69 3hnw_A Uncharacterized protein 36.4 1.3E+02 0.0044 25.4 7.9 55 285-339 75-129 (138)
70 2ocy_A RAB guanine nucleotide 36.1 1.5E+02 0.0052 25.6 8.3 23 287-309 8-30 (154)
71 4etp_A Kinesin-like protein KA 35.1 1E+02 0.0034 30.7 8.1 48 292-339 3-50 (403)
72 1gk4_A Vimentin; intermediate 33.9 1.5E+02 0.0052 22.6 7.3 24 294-317 35-58 (84)
73 3oja_B Anopheles plasmodium-re 33.3 1.3E+02 0.0045 30.6 9.0 34 317-350 548-581 (597)
74 1wt6_A Myotonin-protein kinase 32.2 1.7E+02 0.0059 22.5 7.8 46 294-339 26-71 (81)
75 3na7_A HP0958; flagellar bioge 31.9 1.5E+02 0.0052 27.2 8.3 10 366-375 200-209 (256)
76 2yf2_A C4B binding protein; im 31.3 78 0.0027 22.6 4.6 37 282-318 22-60 (65)
77 2ap3_A Conserved hypothetical 31.3 37 0.0013 30.7 3.7 62 290-351 71-133 (199)
78 3mov_A Lamin-B1; LMNB1, B-type 31.2 41 0.0014 26.7 3.6 51 302-352 22-72 (95)
79 1l8d_A DNA double-strand break 29.4 86 0.0029 24.9 5.4 48 282-329 52-101 (112)
80 1gk6_A Vimentin; intermediate 28.1 75 0.0025 22.8 4.2 48 289-340 4-51 (59)
81 3iox_A AGI/II, PA; alpha helix 27.2 1.7E+02 0.0059 29.9 8.2 25 318-342 81-105 (497)
82 3fpp_A Macrolide-specific effl 26.2 93 0.0032 29.3 5.9 14 257-270 53-66 (341)
83 3lnn_A Membrane fusion protein 26.1 2.1E+02 0.0072 27.0 8.5 68 256-339 78-155 (359)
84 1dkg_A Nucleotide exchange fac 24.3 1.5E+02 0.005 26.5 6.4 42 295-336 38-83 (197)
85 2yy0_A C-MYC-binding protein; 24.1 1.5E+02 0.005 20.9 5.0 30 301-330 21-50 (53)
86 2h2b_A Tight junction protein 23.5 78 0.0027 24.4 4.0 21 250-271 50-70 (107)
87 2bzb_A Conserved domain protei 23.3 1.6E+02 0.0054 21.4 5.3 49 294-349 3-51 (62)
88 3swy_A Cyclic nucleotide-gated 23.1 1.9E+02 0.0064 19.9 6.5 34 290-323 3-36 (46)
89 2f1m_A Acriflavine resistance 23.1 2.5E+02 0.0084 25.4 8.1 68 257-336 44-121 (277)
90 1qyp_A RNA polymerase II; tran 23.0 64 0.0022 22.6 3.1 37 151-195 15-51 (57)
91 3oja_A Leucine-rich immune mol 22.8 2.4E+02 0.0081 28.0 8.5 58 294-351 419-476 (487)
92 3iox_A AGI/II, PA; alpha helix 22.6 2.7E+02 0.0091 28.5 8.5 13 398-410 207-219 (497)
93 3aco_A Pacsin2, protein kinase 22.4 1.8E+02 0.0063 27.6 7.3 47 292-338 192-238 (350)
94 2qkd_A Zinc finger protein ZPR 21.5 1.6E+02 0.0056 29.3 6.7 24 292-315 105-128 (404)
95 1no4_A Late, head morphogenesi 21.3 2.3E+02 0.0078 21.7 5.9 63 288-350 8-70 (97)
96 2eqb_B RAB guanine nucleotide 20.2 3.3E+02 0.011 21.6 7.1 46 301-346 7-52 (97)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=5e-35 Score=291.13 Aligned_cols=210 Identities=22% Similarity=0.293 Sum_probs=81.0
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc---
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE--- 89 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~--- 89 (414)
...+|||+||||+++||.+|||+|||+||++||||+++ ++.|.++|++|++||++|+||.+|+.||+++......+
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~-~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~ 103 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR 103 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCC-ChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccc
Confidence 34579999999999999999999999999999999998 56788999999999999999999999999854321110
Q ss_pred cccc-cccccccccchhhhhhhhcc-----------cCccceeccchhhHHHHhcCccccccCCCccccCCccccccccc
Q 015023 90 GMDM-EIDLSNLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHF 157 (414)
Q Consensus 90 g~~~-~~d~s~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~vk~~~lc~Gtg~~g~~~k~C~~C 157 (414)
++.. ..+++ .++|.++|++|||+ .|.|+...|.+ +|+|+|+|+.+...+.
T Consensus 104 ~~~~~~~~f~-~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~v-sleea~~G~~k~i~i~---------------- 165 (329)
T 3lz8_A 104 QRQTHEQSYS-QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAV-FLEETLAEQTRTISYN---------------- 165 (329)
T ss_dssp ----------------------------------CCCCCCEEEEECC-CTTGGGSCEEEEEEEE----------------
T ss_pred ccccccCCcC-CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEec-chhhhhhccceEEEEE----------------
Confidence 0000 01111 13578899999974 36689999999 9999999986432110
Q ss_pred cceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccccccCCCCCCceEeeeeEEEEEEEccCCCccceEEecCC
Q 015023 158 FGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKD 237 (414)
Q Consensus 158 ~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~i~~~s~C~G~g~~~~~~~l~v~Vp~G~~~g~~I~i~~~ 237 (414)
. +.|.|.|.+ ++.....|+|.||+|+.+|++|+++++
T Consensus 166 ---------------------~-----------~v~~g~G~v-----------~~~~~~~l~V~IP~Gv~~G~~Irl~G~ 202 (329)
T 3lz8_A 166 ---------------------L-----------PVYNVFGMI-----------ESETPKTLNVKIPAGVVDGQRIRLKGQ 202 (329)
T ss_dssp ---------------------E-----------EECCSCC-C-----------CEEEEEEEEEEECTTCCTTCEEEESSC
T ss_pred ---------------------E-----------EeecCCeEE-----------EEecceEEEEeCCCCCCCCCEEEEccc
Confidence 0 111222322 233456899999999999999999999
Q ss_pred CchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015023 238 PESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 238 g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~Gdnl~~~~~isl-eal~g~s~~ 288 (414)
|+++. ++..++|++ .+. ..|++|.|+|+||++++.|++ +|+||.++.
T Consensus 203 G~~g~----~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~ 252 (329)
T 3lz8_A 203 GTPGE----NGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVT 252 (329)
T ss_dssp SCCC-------CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEE
T ss_pred ccCCC----CCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEE
Confidence 95543 356688888 444 459999999999999999998 999997753
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.90 E-value=2.9e-24 Score=205.96 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=133.2
Q ss_pred cCccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccccccccccceee--eeeeccceeEEEEeeeccCc
Q 015023 114 LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSK 182 (414)
Q Consensus 114 ~G~di~~~I~~~sLeEa~~G~vk--------~~~lc~Gtg~-~g~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~k 182 (414)
.|.|+.+.|.+ +|+|||+|+++ .|+.|.|+|. +++ ..+|+.|.|.+. ..+++++ |+++.+++|
T Consensus 10 ~g~d~~~~l~v-slee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C--- 83 (248)
T 1nlt_A 10 RGKDIKHEISA-SLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTEC--- 83 (248)
T ss_dssp BCCCEEEEEEE-CTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSC---
T ss_pred CCCCEEEEEEe-cHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcC---
Confidence 57899999999 99999999864 4788999986 455 589999998544 3455566 777888999
Q ss_pred ceeeecccCCCCcccccc---ccCCCCCCceEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc
Q 015023 183 FKLLYFEQDTNGGYGLAL---QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK 258 (414)
Q Consensus 183 fkli~f~~~~CgG~G~~i---~~~s~C~G~g~~~~~~~l~v~Vp~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~ 258 (414)
+.|+|.|.++ ..|..|+|+|++.+.+.|+|.||+|+.+|++|+|++++ +..++..++|++ .+.
T Consensus 84 --------~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G-----~~~~~g~~GDl~v~i~ 150 (248)
T 1nlt_A 84 --------DVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEA-----DQAPDVIPGDVVFIVS 150 (248)
T ss_dssp --------TTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCS-----CCCTTCBCCCEEEEEE
T ss_pred --------CCCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeee-----cCCCCCCcceEEEEEE
Confidence 9999999766 56888999999999999999999999999999999999 555677889998 444
Q ss_pred -CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015023 259 -AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 259 -~gd~~f~r~Gdnl~~~~~isl-eal~g~s~ 287 (414)
..|.+|.|+|||||+++.|+| +||||.++
T Consensus 151 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i 181 (248)
T 1nlt_A 151 ERPHKSFKRDGDDLVYEAEIDLLTAIAGGEF 181 (248)
T ss_dssp ECCCSSCEEETTEEEEEEEEEHHHHHHCBCC
T ss_pred EecCccceeeCCEEEEEEEeCHHHHhcCCEE
Confidence 459999999999999999998 99999875
No 3
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.87 E-value=4.9e-23 Score=171.83 Aligned_cols=75 Identities=43% Similarity=0.795 Sum_probs=70.8
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
..|||+||||+++|+.++||+|||+|++++|||++++++.+.++|+.|++||++|+||.+|+.||++|..++...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 76 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQG 76 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhccc
Confidence 569999999999999999999999999999999998778899999999999999999999999999999887654
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=1.2e-21 Score=154.83 Aligned_cols=75 Identities=49% Similarity=0.827 Sum_probs=69.1
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
+..|||+||||+++|+.++||+|||+|++++|||+++ ++.+.+.|+.|++||++|+||.+|+.||++|.+++..+
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 75 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGS 75 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCSS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccccC
Confidence 3579999999999999999999999999999999997 56788999999999999999999999999998876543
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-21 Score=155.19 Aligned_cols=73 Identities=45% Similarity=0.713 Sum_probs=68.6
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEA 85 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~ 85 (414)
....|||+||||+++|+.++||+|||+|++++|||++++++.+.++|+.|++||++|+||.+|+.||.+|..+
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 4467999999999999999999999999999999999988889999999999999999999999999998654
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-21 Score=154.68 Aligned_cols=76 Identities=51% Similarity=0.691 Sum_probs=68.7
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHhhhhccccCcccccccCccccccc
Q 015023 11 APTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP-EAAELFKEVAYSYSILSDPEKRRHYDNAGFEAI 86 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~ 86 (414)
......|||+||||+++|+.++||+|||+|++++|||++++++ .+.++|+.|++||++|+||.+|+.||.+|..++
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp CCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 3345679999999999999999999999999999999998663 678899999999999999999999999997654
No 7
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=4.7e-21 Score=161.46 Aligned_cols=80 Identities=45% Similarity=0.684 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccc
Q 015023 8 GSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAID 87 (414)
Q Consensus 8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~ 87 (414)
.+..+....|||+||||+++|+.++||+|||+|++++|||++++++.+.++|+.|++||++|+||.+|+.||.+|..++.
T Consensus 9 ~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 9 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp CCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 44456678899999999999999999999999999999999998889999999999999999999999999999977654
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=5.4e-21 Score=154.97 Aligned_cols=78 Identities=45% Similarity=0.679 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccc
Q 015023 6 MEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFE 84 (414)
Q Consensus 6 ~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~ 84 (414)
.-.........|||+||||+++|+.++||+|||+|++++|||+++ ++.+.++|+.|++||++|+||.+|+.||.+|..
T Consensus 7 ~~~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 7 GILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp CCCCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCC-STTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred hHhhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 334445567889999999999999999999999999999999998 577889999999999999999999999999864
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.2e-21 Score=157.96 Aligned_cols=73 Identities=33% Similarity=0.576 Sum_probs=68.0
Q ss_pred CCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccc
Q 015023 10 SAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 10 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
.......|||+||||+++|+.++||+|||+|+++||||++++++.+.++|+.|++||+||+||.+|+.||+..
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 3446778999999999999999999999999999999999888889999999999999999999999999853
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.7e-21 Score=153.74 Aligned_cols=76 Identities=41% Similarity=0.739 Sum_probs=70.3
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
....|||+||||+++|+.++||+|||+|++++|||+++ ++.+.++|+.|++||++|+||.+|+.||.+|..++...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 34679999999999999999999999999999999998 78899999999999999999999999999998776543
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.1e-21 Score=155.05 Aligned_cols=79 Identities=47% Similarity=0.680 Sum_probs=71.1
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 11 APTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
......|||+||||+++|+.++||+|||+|+++||||+++.+ +.+.++|+.|++||++|+||.+|+.||.+|..++...
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 334567999999999999999999999999999999999865 4688899999999999999999999999998776554
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8e-21 Score=150.37 Aligned_cols=72 Identities=51% Similarity=0.856 Sum_probs=67.2
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEA 85 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~ 85 (414)
....|||+||||+++|+.++||+|||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|+.||++|..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 44679999999999999999999999999999999997 5788999999999999999999999999998654
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=160.17 Aligned_cols=75 Identities=31% Similarity=0.446 Sum_probs=70.2
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAID 87 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~ 87 (414)
....|||+||||+++|+.++||+|||+|+++||||++++++.+.++|+.|++||++|+||.+|+.||++|..++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 456899999999999999999999999999999999998888999999999999999999999999999876543
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.79 E-value=2.8e-20 Score=145.45 Aligned_cols=67 Identities=51% Similarity=0.810 Sum_probs=62.0
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccc
Q 015023 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
...|||+||||+++|+.++||+|||+|++++|||+++++ .+.|+.|++||++|+||.+|+.||++|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 456999999999999999999999999999999999754 4789999999999999999999999985
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-20 Score=154.67 Aligned_cols=74 Identities=47% Similarity=0.697 Sum_probs=65.3
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
.|||+||||+++|+.++||+|||+|+++||||+++++ +.+.+.|+.|++||++|+||.+|+.||.+|.+++...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~~ 76 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGT 76 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 5999999999999999999999999999999999865 4578899999999999999999999999998776544
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.4e-20 Score=150.87 Aligned_cols=73 Identities=45% Similarity=0.756 Sum_probs=67.1
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
...|||+||||+++|+.++||+|||+|++++|||++++++ ++|+.|++||++|+||.+|+.||++|..++...
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCH---HHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChH---HHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 4579999999999999999999999999999999997653 699999999999999999999999998877654
No 17
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.78 E-value=5.7e-20 Score=150.38 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=64.8
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHhhhhccccCcccccccCccc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN------PEAAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~------~~a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
....|||+||||+++|+.++||+|||+|+++||||+++.+ +.+.++|+.|++||++|+||.+|+.||.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 4577999999999999999999999999999999998753 568899999999999999999999999875
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.74 E-value=2.5e-19 Score=165.70 Aligned_cols=74 Identities=39% Similarity=0.693 Sum_probs=69.8
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
.|||+||||+++|+.++||+|||+|++++|||++++++++.++|+.|++||++|+||.+|+.||++|..++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 59999999999999999999999999999999998888999999999999999999999999999998776543
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.72 E-value=6.8e-19 Score=148.06 Aligned_cols=73 Identities=34% Similarity=0.432 Sum_probs=66.7
Q ss_pred CCCCCCCCccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHhhhhccccCcccccccCcccc
Q 015023 11 APTIRRDPYEVLCVSRDS-SDQEIKTAYRKLALKYHPDKNVS---NPEAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~la~~~HPDk~~~---~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
......|||+||||+++| +.++||+|||+|++++|||++++ .+.+.++|+.|++||++|+||.+|+.||++|.
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 344577999999999999 99999999999999999999975 36688999999999999999999999999874
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-18 Score=137.07 Aligned_cols=62 Identities=35% Similarity=0.542 Sum_probs=58.5
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccc
Q 015023 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRH 77 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~ 77 (414)
..|||+||||+++|+.++||+|||+|+++||||+++ ++.+.++|+.|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCC-CTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCcccccC
Confidence 479999999999999999999999999999999997 57788999999999999999999875
No 21
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.68 E-value=8.5e-18 Score=149.87 Aligned_cols=70 Identities=31% Similarity=0.570 Sum_probs=64.0
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHhhhhccccCcccccccCcccc
Q 015023 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP------EAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~------~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
...|||+||||+++|+.++||+|||+|++++|||++++++ .|.++|+.|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3569999999999999999999999999999999998653 367899999999999999999999998753
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.66 E-value=4.7e-18 Score=144.18 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=60.5
Q ss_pred CCCCccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccc
Q 015023 15 RRDPYEVLCVSRDSSD--QEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~--~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
..|||+||||+++|+. ++||+|||+||+++|||++++ .++|+.|++||+||+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3589999999999999 999999999999999999974 3799999999999999999999999874
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.64 E-value=4e-17 Score=132.28 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=61.7
Q ss_pred CCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHhhhhccccCccccccc
Q 015023 9 SSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP-EAAELFKEVAYSYSILSDPEKRRHY 78 (414)
Q Consensus 9 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~AyevLsdp~kR~~Y 78 (414)
.+.+....++|+||||+++|+.+|||+|||+||++||||++++++ .+.++|+.|++||++|+|...|..+
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 344556679999999999999999999999999999999998764 5889999999999999998877444
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.64 E-value=3.2e-17 Score=130.26 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=59.7
Q ss_pred CCCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccc
Q 015023 15 RRDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAI 86 (414)
Q Consensus 15 ~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~ 86 (414)
..++|+||||+++ |+.++||+|||+||+++|||+++ + .++|++|++||++|+|+.+|.. |.||.+++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~---~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-S---HALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-C---HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-C---HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 3589999999999 99999999999999999999986 3 4799999999999999999988 56776554
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.62 E-value=5.9e-17 Score=147.26 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=61.5
Q ss_pred CCCCccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCcc
Q 015023 15 RRDPYEVLCVSRDSS--DQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDNA 81 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as--~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~~ 81 (414)
..|||+||||+++++ .++||++||+|+++||||++++.+. |.+.|..|++||+||+||.+|+.||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 569999999999998 9999999999999999999987654 678999999999999999999999974
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.62 E-value=1.2e-17 Score=151.22 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=57.9
Q ss_pred CCCCccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccc
Q 015023 15 RRDPYEVLCVSRDSS--DQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as--~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
..|||+||||+++|+ .++||+|||+||+++|||++++ .++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 469999999999998 6999999999999999999975 2689999999999999999999999995
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.61 E-value=1.2e-16 Score=145.52 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=60.4
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHhhhhccccCccccccc
Q 015023 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPE---AAELFKEVAYSYSILSDPEKRRHY 78 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~---a~~~f~~i~~AyevLsdp~kR~~Y 78 (414)
...|||+||||+++|+.++||+|||+|++++|||++++.+. |.++|+.|++||++|+||.+|+.|
T Consensus 115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34699999999999999999999999999999999986653 789999999999999999999988
No 28
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=5.2e-17 Score=177.37 Aligned_cols=79 Identities=37% Similarity=0.632 Sum_probs=40.9
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015023 11 APTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
......|||+||||+++||.++||+|||+||++||||++++++.+.++|+.|++||++|+||.+|+.||++|..++...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 3456789999999999999999999999999999999998888899999999999999999999999999998877544
No 29
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.59 E-value=2.4e-16 Score=146.96 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=60.6
Q ss_pred CCCCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCc
Q 015023 14 IRRDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
...|||+||||+++ ++.++||++||+|+++||||++++++. |.++|+.|++||+||+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 46799999999996 799999999999999999999986542 56789999999999999999999995
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.59 E-value=2.2e-16 Score=128.67 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=52.0
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHhhhhccccC
Q 015023 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP---EAAELFKEVAYSYSILSD 71 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~---~a~~~f~~i~~AyevLsd 71 (414)
.++|++|||+++||.++||+|||++|++||||++++++ .|.++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998765 378899999999999975
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.59 E-value=1.6e-16 Score=144.03 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=60.9
Q ss_pred CCccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCccc
Q 015023 17 DPYEVLCVSRDS--SDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 17 d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
|||+||||++++ +..+||++||+|+++||||++++.+. |.++|+.|++||+||+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 99999999999999999999987643 5578999999999999999999999763
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.55 E-value=6.2e-16 Score=129.50 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHhhhhccccCcc
Q 015023 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVS---NP----EAAELFKEVAYSYSILSDPE 73 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~---~~----~a~~~f~~i~~AyevLsdp~ 73 (414)
+...|||+|||++. ||.++||+|||+||++||||++++ ++ .|.++|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 44679999999996 999999999999999999999863 22 46889999999999999986
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.52 E-value=1.3e-15 Score=139.29 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=60.2
Q ss_pred CCCCCCcccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccc
Q 015023 13 TIRRDPYEVL------CVSR-DSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 13 ~~~~d~Y~iL------gv~~-~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
+...|||+|| |+++ +|+.++||+|||+|+++||||++++ +.++|+.|++||+||+||.+|+.||...
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3467999999 5665 9999999999999999999999985 5688999999999999999999999843
No 34
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.6e-15 Score=115.90 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=52.7
Q ss_pred CCCCCccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCccccc
Q 015023 14 IRRDPYEVLCVSR-DSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRR 76 (414)
Q Consensus 14 ~~~d~Y~iLgv~~-~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~ 76 (414)
...++|+||||++ +|+.++||+|||+|++++|||++. ++ +.|++|++||++|+|+..|+
T Consensus 12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~~---~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHhhhhhcC
Confidence 3458999999999 799999999999999999999974 43 59999999999999988763
No 35
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.42 E-value=1e-13 Score=126.67 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=85.0
Q ss_pred CccceeccchhhHHHHhcCccccccCCCccccCCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCC
Q 015023 115 GVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNG 194 (414)
Q Consensus 115 G~di~~~I~~~sLeEa~~G~vk~~~lc~Gtg~~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~Cg 194 (414)
|.|+.+.+.+ +|+|||+|+++... ....| ..
T Consensus 2 ~~d~~~~l~i-slee~~~G~~k~i~-----------------------------------i~~~c-----------~~-- 32 (181)
T 3agx_A 2 DPPVTHDLRV-SLEEIYSGCTKKMK-----------------------------------ISHKR-----------LN-- 32 (181)
T ss_dssp ----CEEEEE-CHHHHHHCEEEEEE-----------------------------------EEEEE-----------EC--
T ss_pred CCCEEEEEEE-EHHHhcCCcEEEEE-----------------------------------Eeccc-----------CC--
Confidence 5688999999 99999999874331 11235 43
Q ss_pred ccccccccCCCCCCceEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCcee
Q 015023 195 GYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFF 272 (414)
Q Consensus 195 G~G~~i~~~s~C~G~g~~~~~~~l~v~Vp~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~Gdnl~ 272 (414)
|+|+|++.+...|+|.||+|+.+|++|+++++| +..++..++|++ .+. ..|.+|.|+|+|||
T Consensus 33 -----------c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G-----~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~ 96 (181)
T 3agx_A 33 -----------PDGKSIRNEDKILTIEVKKGWKEGTKITFPKEG-----DQTSNNIPADIVFVLKDKPHNIFKRDGSDVI 96 (181)
T ss_dssp -----------TTSSCEEEEEEEEEEEECTTCCTTCEEEETTCS-----CCCSSSCCCCEEEEEEECCCSSCEEETTEEE
T ss_pred -----------CCCceEEEEeEEEEEEECCCccCCcEEEEeecc-----ccCCCCCcccEEEEEEEeccccceeeCCcEE
Confidence 555566788899999999999999999999999 555677889997 444 45999999999999
Q ss_pred EecCccE-EEecCcch
Q 015023 273 KTATYTI-EALCAKSY 287 (414)
Q Consensus 273 ~~~~isl-eal~g~s~ 287 (414)
+++.|++ +|++|.++
T Consensus 97 ~~~~Isl~eAllG~~i 112 (181)
T 3agx_A 97 YPARISLREALCGCTV 112 (181)
T ss_dssp EEEEEEHHHHHHCEEE
T ss_pred EEEEcCHHHHhCCCEE
Confidence 9999998 99999775
No 36
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.20 E-value=1.2e-11 Score=112.65 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=64.9
Q ss_pred eEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcc
Q 015023 210 VTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKS 286 (414)
Q Consensus 210 g~~~~~~~l~v~Vp~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~Gdnl~~~~~isl-eal~g~s 286 (414)
|++.+...|+|.||+|+.+|++|+++++|+.+ .+|..++|++ .+. ..|.+|.|+||||++++.|++ +|+||++
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g----~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~ 111 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQE----SPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFT 111 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCS----STTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEE
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCC----CCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCE
Confidence 56778899999999999999999999999443 5688899998 444 459999999999999999998 9999977
Q ss_pred hh
Q 015023 287 YE 288 (414)
Q Consensus 287 ~~ 288 (414)
+.
T Consensus 112 i~ 113 (180)
T 2q2g_A 112 CP 113 (180)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 37
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.7e-12 Score=104.84 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=73.2
Q ss_pred CccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCccee
Q 015023 115 GVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKL 185 (414)
Q Consensus 115 G~di~~~I~~~sLeEa~~G~vk--------~~~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkl 185 (414)
|.++.+.|.+ +|+|||+|.++ .|+.|.|+|. +++.+.+|+.|.|.+.+.... |+|+ .+.+|
T Consensus 1 ~~~~~~~l~v-slee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~-~~~~C------ 70 (104)
T 2ctt_A 1 GSSGSSGMEL-TFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFV-MRSTC------ 70 (104)
T ss_dssp CCCCCCCCCC-CCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEE-EEEEC------
T ss_pred CCceEEEEEE-EHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEE-EEEEC------
Confidence 4577888998 99999999864 4678999975 566778999999976655544 4444 46789
Q ss_pred eecccCCCCcccccc-ccCCCCCCceEeeeeEEEEEEE
Q 015023 186 LYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQV 222 (414)
Q Consensus 186 i~f~~~~CgG~G~~i-~~~s~C~G~g~~~~~~~l~v~V 222 (414)
+.|+|.|.++ .+|..|+|.|++.+.+.|+|.+
T Consensus 71 -----~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 71 -----RRCGGRGSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp -----SSSSSSSEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred -----CcCCCcceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 9999999775 5688899999998888877654
No 38
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.02 E-value=9.6e-11 Score=105.81 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=61.4
Q ss_pred eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015023 214 GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 214 ~~~~l~v~Vp~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~Gdnl~~~~~isl-eal~g~s~ 287 (414)
....++|.||+|+.+|++|+++++|+++ .+|..++|++ .+. ..|.+|.|+|+||++++.|++ +|+||+++
T Consensus 34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~----~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~ 106 (170)
T 1c3g_A 34 EKTQIDIQLKPGWKAGTKITYKNQGDYN----PQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSK 106 (170)
T ss_dssp EEEEEEEECCTTCCTTCEEEESSCSSBC----SSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEE
T ss_pred EeEEEEEEeCCCccCCCEEEEeccccCC----CCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeE
Confidence 6788999999999999999999999443 4788889998 444 459999999999999999998 99999875
No 39
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.93 E-value=4.5e-10 Score=111.19 Aligned_cols=66 Identities=44% Similarity=0.757 Sum_probs=56.3
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHhhhhccccCcccccccCc
Q 015023 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN---PEAAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~---~~a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
..++|++||+.+.++.++|+++|+++++++|||+.+.+ ..+.++|+.|.+||++|+||.+|+.||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 35899999999999999999999999999999999754 3478899999999999999999999997
No 40
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.6e-07 Score=71.43 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccC
Q 015023 17 DPYEVLCVSRD---SSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSD 71 (414)
Q Consensus 17 d~Y~iLgv~~~---as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsd 71 (414)
.-|.||||+++ ++.++|+++||+|....|||+.. .+ -....|++|+++|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG-S~---yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG-SF---YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC-CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHHHH
Confidence 34889999999 99999999999999999999975 33 456788999988854
No 41
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.34 E-value=5.1e-07 Score=86.08 Aligned_cols=125 Identities=11% Similarity=0.057 Sum_probs=90.8
Q ss_pred CccccCC--ccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccc-------------cccCCCC
Q 015023 142 IGTSVSG--KVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA-------------LQEDSEK 206 (414)
Q Consensus 142 ~Gtg~~g--~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~-------------i~~~s~C 206 (414)
.|..... .....|.+|.|.+.. +|. ..+| +.|+|+|++ .+.|+.|
T Consensus 27 ~G~~k~i~~~r~~~C~~C~G~G~~-----~g~----~~~C-----------~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 27 KGRTAKLALNKQILCKECEGRGGK-----KGA----VKKC-----------TSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp HCEEEEEEEEEEEECTTTTTCSBS-----TTT----CCCC-----------TTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCceEEEEeeEEEeCCCCcCccCC-----CCC----CccC-----------CCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 4554332 334489999885432 222 1367 999999963 3468899
Q ss_pred CCceEee----------eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEe
Q 015023 207 TGKVTSA----------GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKT 274 (414)
Q Consensus 207 ~G~g~~~----------~~~~l~v~Vp~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~Gdnl~~~ 274 (414)
+|.|... +...+.-. ....|.||.+.+++...+++|.+.... ...+||++|. +..|++|.+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~------~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R 159 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENER------KILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKR 159 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEE------EEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEE
T ss_pred CCcCEEeccCCCCcccCCCceEeee------EEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCcccee
Confidence 9998433 34333221 346899999999999999999987643 4479999998 689999999
Q ss_pred cCccEEEecCcchhhhhhh
Q 015023 275 ATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 275 ~~isleal~g~s~~~~~~~ 293 (414)
.+.+|..-+.+++.+|+..
T Consensus 160 ~G~DL~~~~~Isl~eAllG 178 (248)
T 1nlt_A 160 DGDDLVYEAEIDLLTAIAG 178 (248)
T ss_dssp ETTEEEEEEEEEHHHHHHC
T ss_pred eCCEEEEEEEeCHHHHhcC
Confidence 9999999999999887653
No 42
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.93 E-value=8.1e-06 Score=63.77 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.6
Q ss_pred ccccCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccccc-ccCCCCCCceEee
Q 015023 136 TVRPLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSA 213 (414)
Q Consensus 136 k~~~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~i-~~~s~C~G~g~~~ 213 (414)
..|+.|.|+|. .+....+|+.|.|.+.+.... |+++ .+.+| +.|+|.|.++ ..|+.|+|.|++.
T Consensus 12 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFA-VQQTC-----------PHCQGRGTLIKDPCNKCHGHGRVE 77 (79)
T ss_dssp EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEE-EEEEC-----------TTTTTSSEECSSBCGGGTTSSEEE
T ss_pred eECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCE-EeeEC-----------cCCCCccEECCCcCCCCCCeEEEe
Confidence 46888999986 455567899999966544333 5654 46789 9999999765 4688899999775
Q ss_pred e
Q 015023 214 G 214 (414)
Q Consensus 214 ~ 214 (414)
+
T Consensus 78 ~ 78 (79)
T 1exk_A 78 R 78 (79)
T ss_dssp C
T ss_pred e
Confidence 3
No 43
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=95.58 E-value=0.015 Score=51.88 Aligned_cols=67 Identities=10% Similarity=-0.036 Sum_probs=59.3
Q ss_pred CccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015023 227 STLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 227 ~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~Gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....|.||.+..+|...+++|.+.....+..+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 35 ~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG 103 (170)
T 1c3g_A 35 KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLG 103 (170)
T ss_dssp EEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHC
T ss_pred eEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCC
Confidence 355788999999999999999999866777889999998 6899999999999999999999998654
No 44
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=94.93 E-value=0.024 Score=51.02 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=57.4
Q ss_pred ccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015023 228 TLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 228 ~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~Gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
....|.||.+..+|...+++|.+..+..+..+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 42 ~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG 109 (180)
T 2q2g_A 42 NIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTG 109 (180)
T ss_dssp EEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHC
T ss_pred EEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCC
Confidence 34678899999999999999999765557789999998 6899999999999999999999887654
No 45
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=94.76 E-value=0.051 Score=53.52 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=55.5
Q ss_pred cceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015023 229 LNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 229 g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~Gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
...|.||.+..+|...+++|.+........+||++|. +..|++|.+.+.+|...+.+++.+|+..
T Consensus 182 ~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG 248 (329)
T 3lz8_A 182 TLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALG 248 (329)
T ss_dssp EEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHC
T ss_pred EEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCC
Confidence 4678999999999999999999877667789999998 6899999999999999999999887653
No 46
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=94.61 E-value=0.039 Score=49.65 Aligned_cols=64 Identities=11% Similarity=-0.024 Sum_probs=56.0
Q ss_pred cceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015023 229 LNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 229 g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~Gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
...|.||.+.++|...+++|.+.... ...+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 44 ~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG 109 (181)
T 3agx_A 44 ILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCG 109 (181)
T ss_dssp EEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHC
T ss_pred EEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCC
Confidence 46789999999999999999987655 5679999998 6899999999999999999999887654
No 47
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=94.07 E-value=0.026 Score=40.75 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=19.0
Q ss_pred CCCCcccccc-ccCCCCCCceEeee
Q 015023 191 DTNGGYGLAL-QEDSEKTGKVTSAG 214 (414)
Q Consensus 191 ~~CgG~G~~i-~~~s~C~G~g~~~~ 214 (414)
+.|+|+|.++ .+|+.|+|.|.+..
T Consensus 13 ~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 13 PNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp TTTTTSCEETTEECTTTTTSSEEEC
T ss_pred cCCcccccCCCCcCCCCCCcEEEEE
Confidence 9999999665 56888999987543
No 48
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=92.98 E-value=0.17 Score=41.70 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=19.5
Q ss_pred EEEEEccCCCccceEEecCCC
Q 015023 218 LHFQVYRMDSTLNAIAIAKDP 238 (414)
Q Consensus 218 l~v~Vp~G~~~g~~I~i~~~g 238 (414)
+.|.||+|+..|..++++++|
T Consensus 40 ~~v~ip~g~~~G~~~rl~G~G 60 (109)
T 3i38_A 40 ILLTVPPGSQAGQRLRIKGKG 60 (109)
T ss_dssp EEEEECTTCCTTCEEEETTCS
T ss_pred EEEeeCCCcCcCeEEEECCcc
Confidence 567999999999999999999
No 49
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=92.69 E-value=0.011 Score=49.01 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=25.2
Q ss_pred CCeeEEEeCCceeEecCccE-EEecCcch
Q 015023 260 GTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 260 gd~~f~r~Gdnl~~~~~isl-eal~g~s~ 287 (414)
.|.+|.|+|+||++++.|++ +|++|+++
T Consensus 3 ph~~F~R~G~DL~~~~~Isl~eAl~G~~i 31 (109)
T 3i38_A 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKV 31 (109)
T ss_dssp -CCCCEEETTEEEEEEEECHHHHHHCEEE
T ss_pred CCCCeEEECCEEEEEEEcCHHHHhCCCEE
Confidence 48899999999999999998 99999775
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=92.13 E-value=0.071 Score=40.95 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=31.5
Q ss_pred ccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccccc---------ccCCCCCCceEe
Q 015023 149 KVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL---------QEDSEKTGKVTS 212 (414)
Q Consensus 149 ~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~i---------~~~s~C~G~g~~ 212 (414)
.....|++|.|.+... +. ...+| +.|+|+|.++ ..|+.|+|.|.+
T Consensus 9 ~~~~~C~~C~G~G~~~-----~~---~~~~C-----------~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 62 (79)
T 1exk_A 9 PTLEECDVCHGSGAKP-----GT---QPQTC-----------PTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62 (79)
T ss_dssp CCEEECGGGTTTSBCS-----SS---CCEEC-----------TTTTTSSEEEEEETTEEEEEECTTTTTSSEE
T ss_pred ccceECCCCcccccCC-----Cc---cCCCC-----------CCCcCeEEEEEEcCCCEEeeECcCCCCccEE
Confidence 3456899999954321 11 13478 9999999764 479999999865
No 51
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=90.53 E-value=0.14 Score=36.86 Aligned_cols=22 Identities=14% Similarity=-0.089 Sum_probs=13.1
Q ss_pred CCCCcccccc-ccCCCCCCceEe
Q 015023 191 DTNGGYGLAL-QEDSEKTGKVTS 212 (414)
Q Consensus 191 ~~CgG~G~~i-~~~s~C~G~g~~ 212 (414)
+.|+|+|.++ ..|+.|+|.|.+
T Consensus 13 ~~C~GsG~~~~~~C~~C~G~G~v 35 (53)
T 2bx9_A 13 PKCERAGEIEGTPCPACSGKGVI 35 (53)
T ss_dssp TTTTTSSEETTEECTTTTTSSEE
T ss_pred CCCcceeccCCCCCccCCCCccE
Confidence 6666666443 346667666644
No 52
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.48 Score=39.62 Aligned_cols=21 Identities=10% Similarity=-0.135 Sum_probs=18.8
Q ss_pred EEEEEccC--CCccceEEecCCC
Q 015023 218 LHFQVYRM--DSTLNAIAIAKDP 238 (414)
Q Consensus 218 l~v~Vp~G--~~~g~~I~i~~~g 238 (414)
+.|.||+| .+.|..++++++|
T Consensus 36 ~~v~ip~g~v~~~G~~~rl~G~G 58 (121)
T 1xao_A 36 LKVGIVPGEVIAPGMRKVIEGKG 58 (121)
T ss_dssp EEEEECTTSCCCTTCEEEETTCS
T ss_pred EEEEeCCCCeeCCCcEEEECCCC
Confidence 56789999 8999999999999
No 53
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=89.07 E-value=0.037 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.9
Q ss_pred eEEEeCCceeEecCccE-EEecCcch
Q 015023 263 IFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 263 ~f~r~Gdnl~~~~~isl-eal~g~s~ 287 (414)
+|.|.|+||++++.|++ +|+||+++
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i 26 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEF 26 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEE
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEE
Confidence 48899999999999998 99999874
No 54
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.87 E-value=0.36 Score=39.15 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=11.2
Q ss_pred CCCCccccc---------cccCCCCCCceE
Q 015023 191 DTNGGYGLA---------LQEDSEKTGKVT 211 (414)
Q Consensus 191 ~~CgG~G~~---------i~~~s~C~G~g~ 211 (414)
+.|+|+|++ .+.|+.|.|.|.
T Consensus 49 ~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 78 (104)
T 2ctt_A 49 HYCGGSGMETINTGPFVMRSTCRRCGGRGS 78 (104)
T ss_dssp SSSSSSCEEEEEETTEEEEEECSSSSSSSE
T ss_pred CCCCCCEEEEEEeCCEEEEEECCcCCCcce
Confidence 666666633 134566666553
No 55
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=85.03 E-value=0.24 Score=35.57 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=15.1
Q ss_pred eeccCcceeeecccCCCCcccccc
Q 015023 177 STAQSKFKLLYFEQDTNGGYGLAL 200 (414)
Q Consensus 177 s~C~~kfkli~f~~~~CgG~G~~i 200 (414)
..|++.++++.-+|+.|+|.|++.
T Consensus 13 ~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 13 PNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp TTTTTSCEETTEECTTTTTSSEEE
T ss_pred cCCcccccCCCCcCCCCCCcEEEE
Confidence 344444444445559999999764
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=83.87 E-value=0.43 Score=50.79 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.8
Q ss_pred CCCCccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhcc
Q 015023 15 RRDPYEVLCVSRDSSD--QEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSI 68 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~--~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Ayev 68 (414)
..|||.+||++.++.. .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 4469999999777655 77999999999965443 3678888888765
No 57
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=76.76 E-value=1 Score=32.31 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=8.3
Q ss_pred CCCCcccccc
Q 015023 191 DTNGGYGLAL 200 (414)
Q Consensus 191 ~~CgG~G~~i 200 (414)
+.|+|.|.++
T Consensus 27 ~~C~G~G~v~ 36 (53)
T 2bx9_A 27 PACSGKGVIL 36 (53)
T ss_dssp TTTTTSSEEE
T ss_pred ccCCCCccEE
Confidence 9999999764
No 58
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=72.97 E-value=21 Score=25.38 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015023 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
..+..+|..+.....+....+.+|.+++.++..++..+..-+..|.++=.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888888899999999999999888888888887444
No 59
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=70.24 E-value=0.094 Score=56.22 Aligned_cols=40 Identities=10% Similarity=-0.062 Sum_probs=30.9
Q ss_pred eccchhhHHHHhcCccc--------cccCCCcccc-CCc---cccccccccce
Q 015023 120 TTISANVLEEALNGTVT--------VRPLPIGTSV-SGK---VEKQCAHFFGV 160 (414)
Q Consensus 120 ~~I~~~sLeEa~~G~vk--------~~~lc~Gtg~-~g~---~~k~C~~C~G~ 160 (414)
+.+.+ +|+|+..|..+ .|..|+|+|. .++ .+.+|+.|+|.
T Consensus 169 ~~l~i-~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 169 TNQHY-DWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNS 220 (669)
T ss_dssp CCCEE-EEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSST
T ss_pred EEEEE-EhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCC
Confidence 56677 88999999764 2567899986 555 57899999996
No 60
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.03 E-value=21 Score=28.58 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=44.4
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015023 283 CAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 340 (414)
Q Consensus 283 ~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (414)
++-.+..+-..|..+|.++.....|+.++..++.+...+-.++-....+-.+++.+|=
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888899999999999999999999988888877776666666555565553
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.52 E-value=33 Score=29.10 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=44.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015023 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
+.-..+..++.+|..+.+|+..++.|-.++..+++++...+.+...++++|-.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888889999999999999998888888888888888877777777554
No 62
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.20 E-value=31 Score=27.87 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHhHHhhhhccc
Q 015023 296 DIEAQILRKRKELREFEIEYRKALARFQE---ATNRYSQEKQSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 296 ~~E~~~~~~k~e~~~f~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~ 351 (414)
.+=..|...-+.+.++++||++-.+.++. ....++.+...+.+-|++|+++-.+=+
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~ 92 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKL 92 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566666666666555554 445667777778889999988765543
No 63
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=52.09 E-value=35 Score=31.21 Aligned_cols=45 Identities=29% Similarity=0.385 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015023 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
..+..++.+|...+.++..++..|+-+++.|++.-.|..++.+.+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~ 103 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAA 103 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999999999999998887654
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.54 E-value=67 Score=29.69 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=8.7
Q ss_pred HHHHHHhHHhhhhc
Q 015023 336 VDELLKQRDAIHSS 349 (414)
Q Consensus 336 ~~~~~~~r~~~~~~ 349 (414)
+.+|.++|+++-..
T Consensus 159 ~~~l~~~r~~l~~~ 172 (256)
T 3na7_A 159 QQIIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45666778765444
No 65
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=45.34 E-value=25 Score=31.70 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=46.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHh
Q 015023 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDA 345 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 345 (414)
..|..++|-+-|.....+-+-|++++.||+.|...|.+.+..+.....+.++|=+.=+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~k 69 (206)
T 3oa7_A 11 HEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGN 69 (206)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566777777777777888899999999999999999999888877777776444333
No 66
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=40.86 E-value=23 Score=33.43 Aligned_cols=18 Identities=6% Similarity=0.026 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 015023 27 DSSDQEIKTAYRKLALKY 44 (414)
Q Consensus 27 ~as~~eIk~ayr~la~~~ 44 (414)
.+...+|+..|+...+.|
T Consensus 8 ~~~~~~~~~~f~~Fl~~~ 25 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSLQ 25 (279)
T ss_dssp -CCHHHHHHHHHHHTTSH
T ss_pred cCChHHHHHHHHHHhccc
Confidence 356677777766665443
No 67
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.48 E-value=83 Score=24.39 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015023 298 EAQILRKRKELREFEIEY 315 (414)
Q Consensus 298 E~~~~~~k~e~~~f~~e~ 315 (414)
|..|..+..|+.+++..+
T Consensus 13 eeEm~~~eeel~~lke~l 30 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDL 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.36 E-value=1.5e+02 Score=25.58 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 015023 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLK 341 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (414)
....|.+.+..|..|.+.+..++-||.....++..+-.+.....++=++|+.
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777788888888888888777777776666566554
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.44 E-value=1.3e+02 Score=25.36 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=46.3
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015023 285 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 285 ~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
..+..-...|...+..|...|+||...+-++.++....++...++......+.+|
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999999999999999999999999888888887777776
No 70
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.10 E-value=1.5e+02 Score=25.58 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 015023 287 YEDNSQKLKDIEAQILRKRKELR 309 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~ 309 (414)
...+++...++|..|..-|.+|.
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 34578888888888888888876
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.11 E-value=1e+02 Score=30.69 Aligned_cols=48 Identities=10% Similarity=0.195 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015023 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
.+|..++.+|...+.++.+++.+..+++....++.++|.+|.+.-..|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888886544444
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.85 E-value=1.5e+02 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 015023 294 LKDIEAQILRKRKELREFEIEYRK 317 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~ 317 (414)
|..+|.+|...|.+|..--.||.+
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~ 58 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQD 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.26 E-value=1.3e+02 Score=30.61 Aligned_cols=34 Identities=3% Similarity=0.022 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcc
Q 015023 317 KALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 350 (414)
+...+++++-.+..+.+++++.+-++-.+.-..+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444433333333333
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.22 E-value=1.7e+02 Score=22.48 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015023 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
-+.+=.+|...|..+..|+.+-+++.++..+......+...++.+|
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457778888888899999999998888877666666666664
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.86 E-value=1.5e+02 Score=27.19 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 015023 366 LSNGSSSKVP 375 (414)
Q Consensus 366 ~~~~~~~~~~ 375 (414)
.-+|-+..++
T Consensus 200 ~C~GC~~~lp 209 (256)
T 3na7_A 200 ACGGCFIRLN 209 (256)
T ss_dssp BCTTTCCBCC
T ss_pred ccCCCCeeeC
Confidence 3344444443
No 76
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=31.30 E-value=78 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=28.0
Q ss_pred ecCcchhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015023 282 LCAKSYED--NSQKLKDIEAQILRKRKELREFEIEYRKA 318 (414)
Q Consensus 282 l~g~s~~~--~~~~i~~~E~~~~~~k~e~~~f~~e~~~~ 318 (414)
.|+.+.++ ....|+.+=.+|.+.+.||..+-+||.|-
T Consensus 22 DC~~P~~~~rTLLEi~KL~LEIQKL~~EL~glskefleh 60 (65)
T 2yf2_A 22 DCHVPTEDVKTLLEIRKLFLEIQKLKVELQGLSKEFLEH 60 (65)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 46666665 45567777778888899999999998874
No 77
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=31.26 E-value=37 Score=30.73 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHhHHhhhhccc
Q 015023 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEA-TNRYSQEKQSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~ 351 (414)
|+.++.+=|..|..-++-|.+=+.||..|......+ -....++-+++.+.+..|...|+.|-
T Consensus 71 a~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~Kkqa~~l~~~~k~RY~~~~~l~ 133 (199)
T 2ap3_A 71 LIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYA 133 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555566666666665555443 23667778888999999999988764
No 78
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.24 E-value=41 Score=26.70 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcccc
Q 015023 302 LRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 352 (414)
Q Consensus 302 ~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 352 (414)
..--..|...+..|...+..|...+..+..+-+.+..=+...-.-|..+.+
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555554444444444444433333444433
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.38 E-value=86 Score=24.86 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=22.4
Q ss_pred ecCcchhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015023 282 LCAKSYEDN--SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRY 329 (414)
Q Consensus 282 l~g~s~~~~--~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~ 329 (414)
+||-++... ...|..++.++...+.++..++.+..+......++..+|
T Consensus 52 vCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 52 VCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444432 223455555555555555555555444444444443333
No 80
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.09 E-value=75 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=33.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015023 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 340 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (414)
+.-..|..+|.+|...|.+|..--.||.+.+.. .-++..|-.+-..||
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Llni----K~~Le~EIatYRkLL 51 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNV----KMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHH
Confidence 445668899999999999999999999877643 233444443444444
No 81
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.24 E-value=1.7e+02 Score=29.91 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHh
Q 015023 318 ALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
.++.|+.....|.++..++++.|++
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666664
No 82
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.19 E-value=93 Score=29.30 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=8.6
Q ss_pred ccCCCeeEEEeCCc
Q 015023 257 LKAGTHIFAVYGDN 270 (414)
Q Consensus 257 i~~gd~~f~r~Gdn 270 (414)
++.|++++..+..+
T Consensus 53 V~kG~~L~~ld~~~ 66 (341)
T 3fpp_A 53 VKKDQLLGVIDPEQ 66 (341)
T ss_dssp ECTTCEEEEECCHH
T ss_pred ECCCCEEEEEChHH
Confidence 44677777765543
No 83
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=26.05 E-value=2.1e+02 Score=26.98 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=39.3
Q ss_pred eccCCCeeEEEeCCceeEecCccEEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 015023 256 ELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFE----------IEYRKALARFQEA 325 (414)
Q Consensus 256 ~i~~gd~~f~r~Gdnl~~~~~isleal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~----------~e~~~~~~~~~~~ 325 (414)
.++.|++++..+..++ ..+...+...++++..-+.++...+ .||.++...|..+
T Consensus 78 ~V~kGq~L~~ld~~~l----------------~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a 141 (359)
T 3lnn_A 78 EVKAGDVLFTIDSADL----------------AQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA 141 (359)
T ss_dssp EECTTCEEEEEECSSH----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHH
T ss_pred EEcCCCEEEEEChHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 3557888888877542 3445556666666666666555543 3455556666655
Q ss_pred HHhhhhhHHHHHHH
Q 015023 326 TNRYSQEKQSVDEL 339 (414)
Q Consensus 326 ~~~~~~~~~~~~~~ 339 (414)
-..+..-...+..+
T Consensus 142 ~a~l~~a~~~l~~~ 155 (359)
T 3lnn_A 142 ASESQRADARLAQL 155 (359)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555554444433
No 84
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=24.30 E-value=1.5e+02 Score=26.53 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHH
Q 015023 295 KDIEAQILRKRKELREFE----IEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 295 ~~~E~~~~~~k~e~~~f~----~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
..++.++...+.++..++ ..|.-+++.|++.-.|..+|.+.+
T Consensus 38 ~~~~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~ 83 (197)
T 1dkg_A 38 DPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKA 83 (197)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544 589999999999999988886543
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.05 E-value=1.5e+02 Score=20.87 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015023 301 ILRKRKELREFEIEYRKALARFQEATNRYS 330 (414)
Q Consensus 301 ~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~ 330 (414)
+...|.|+..++.+|.+.+++.++...|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777666554
No 86
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=23.51 E-value=78 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=14.1
Q ss_pred CCCcceeccCCCeeEEEeCCce
Q 015023 250 QPCEVSELKAGTHIFAVYGDNF 271 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~r~Gdnl 271 (414)
.|++ .++++||.++.+.|.++
T Consensus 50 spA~-agl~~GD~I~~vng~~v 70 (107)
T 2h2b_A 50 GPAE-GQLQENDRVAMVNGVSM 70 (107)
T ss_dssp STTB-TTBCTTCEEEEETTEEC
T ss_pred Cchh-hCCCCCCEEEEECCEEC
Confidence 4455 56778888888776443
No 87
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.33 E-value=1.6e+02 Score=21.42 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhc
Q 015023 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
++.+..+|..+|++|.++-.+| .--...|-++.|| +|.||-+=..+...
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~----Gl~~~~vI~~SQe---LD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARH----GLDHDKVLLFSRD---LDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHH---HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHH---HHHHHHHHHHHhcc
Confidence 5678889999999998886655 1123344455555 79998776555433
No 88
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.13 E-value=1.9e+02 Score=19.87 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015023 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQ 323 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~ 323 (414)
..+++..+|..|-.--.-+..+-.||..+..+-.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555555555555555554433
No 89
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.07 E-value=2.5e+02 Score=25.39 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=33.7
Q ss_pred ccCCCeeEEEeCCceeEecCccEEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 015023 257 LKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFE----------IEYRKALARFQEAT 326 (414)
Q Consensus 257 i~~gd~~f~r~Gdnl~~~~~isleal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~----------~e~~~~~~~~~~~~ 326 (414)
++.|++++..+..++- ..+..+...|...+.++...+.++...+ .||.+++..|..+-
T Consensus 44 V~kGq~L~~ld~~~~~------------~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 44 IEAGVSLYQIDPATYQ------------ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQAN 111 (277)
T ss_dssp ECTTSCSEEECCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCEEEEECcHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 4567777776655431 1223333445555555554444444432 34555555555555
Q ss_pred HhhhhhHHHH
Q 015023 327 NRYSQEKQSV 336 (414)
Q Consensus 327 ~~~~~~~~~~ 336 (414)
.++.+-...+
T Consensus 112 a~l~~a~a~l 121 (277)
T 2f1m_A 112 AAVTAAKAAV 121 (277)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 90
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.04 E-value=64 Score=22.63 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=21.1
Q ss_pred ccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCc
Q 015023 151 EKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGG 195 (414)
Q Consensus 151 ~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG 195 (414)
...|++|...... +.+.|....+-...++|.|..|+-
T Consensus 15 ~~~Cp~Cg~~~~~--------~~q~Q~rsadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 15 KITCPKCGNDTAY--------WWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp ECCCTTTCCSEEE--------EEEECCSSSSCSSEEEEEESSSCC
T ss_pred EeECCCCCCCEEE--------EEEeecccCCCCCcEEEEcCCCCC
Confidence 3579999873332 223333333445567777788863
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.79 E-value=2.4e+02 Score=28.03 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhccc
Q 015023 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 351 (414)
..+...++...|..+.+-..++.+-..+..+-.+|++.+.++++..++.=++-|.+.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 3445566666666677777777777777888888888888888888777666665543
No 92
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.64 E-value=2.7e+02 Score=28.54 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.5
Q ss_pred cccceeeeccCCc
Q 015023 398 KKKWFNLNLKGSD 410 (414)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (414)
..+||.+.|+..+
T Consensus 207 e~~w~~V~LkkGq 219 (497)
T 3iox_A 207 QVKWGSVLLERGQ 219 (497)
T ss_dssp CCEEEEEEECTTC
T ss_pred cceeeeeeecCCC
Confidence 4579977666543
No 93
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=22.35 E-value=1.8e+02 Score=27.62 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 015023 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDE 338 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 338 (414)
..+..++.++...+.++.+-+.+|+.+...+.+...+|.+++..+-+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999999999998889888766544
No 94
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=21.52 E-value=1.6e+02 Score=29.32 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 015023 292 QKLKDIEAQILRKRKELREFEIEY 315 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~ 315 (414)
-.|++||+=|.+....|...+..-
T Consensus 105 G~iTTVEGlL~~~~~~L~~~~~~r 128 (404)
T 2qkd_A 105 GALTTVEGLISRAISGLEQDQPTR 128 (404)
T ss_dssp CEEEEHHHHHHHHHHHHHTTHHHH
T ss_pred ceEEeHHHHHHHHHHHHHhhhhhh
Confidence 348999999999999998887643
No 95
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=21.28 E-value=2.3e+02 Score=21.70 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=47.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcc
Q 015023 288 EDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 288 ~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 350 (414)
.|..++|-.-|..-..+-+-|+++...|..+...|...+.-..+...+-++|+-.-..++...
T Consensus 8 edilnkl~~pel~~serte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqi 70 (97)
T 1no4_A 8 EDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQI 70 (97)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHh
Confidence 455666666666667777788999999999999999888877776666788877666665543
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.16 E-value=3.3e+02 Score=21.61 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015023 301 ILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 301 ~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
+..-|.++.+++.+...+...+.....++..|...=.+.=+.+..|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777776666666666666654444444444443
Done!