BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015024
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 167/287 (58%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ R PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 167/287 (58%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ R PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HI+TL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 166/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADAILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 166/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 166/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA I+ R PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPAIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 166/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ R PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIART 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 170/298 (57%), Gaps = 15/298 (5%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
D++ LP +Q LA FI+ PK +E Y IGGGSP++ T Q E + K L E
Sbjct: 33 DLMTLP-----IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELS 87
Query: 88 -KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + +
Sbjct: 88 PNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYN 147
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
+ M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V
Sbjct: 148 QVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVN 207
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 264
GDPY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G
Sbjct: 208 R-GDPYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGR 263
Query: 265 KSLLAVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
K++L VPI+F S+ IETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 264 KNILLVPIAFTSDCIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 165/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSAH +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAAT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 165/287 (57%), Gaps = 10/287 (3%)
Query: 41 LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
+Q LA FI+ PK +E Y IGGGSP++ T Q E + K L E P K Y+G
Sbjct: 39 IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98 MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + + M+ +
Sbjct: 99 FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
I W I A+ I KEL +F + +V+I FSA +P++ V GDPY E+
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSACSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L VPI+F
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 168/313 (53%), Gaps = 27/313 (8%)
Query: 24 QLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRK 83
QL D+I + + QK +A++I+ R PK ++ Y IGGGSP+R+ ++ QA E+ K
Sbjct: 30 QLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEVCK 86
Query: 84 SL---WEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 140
L + P K YV RY P T E +Q+ +DG+ K V YP FS ST+GSS+
Sbjct: 87 ILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINE 146
Query: 141 LESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGV 198
L + + ++ +VI W EG I A + I K+LQ F P ++V++ FSAH +
Sbjct: 147 LWRQIKALDSERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSL 206
Query: 199 PLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK 258
P+ V GD Y AE+ V IM++L K N Y L +QS+VGP WL T E
Sbjct: 207 PMDVV-NTGDAYPAEVAATVYNIMQKL---KFKNPYRLVWQSQVGPKPWLGAQTAEIAEF 262
Query: 259 LGQKGVKSLLAVPISFVSEHIETLEEIDV------EYKELALKSGIEKWGRVPALGCEAT 312
LG K V L+ +PI+F S+HIETL EID+ EYK +K+ R +L T
Sbjct: 263 LGPK-VDGLMFIPIAFTSDHIETLHEIDLGVIGESEYK--------DKFKRCESLNGNQT 313
Query: 313 FISDLADAVIESL 325
FI +AD V L
Sbjct: 314 FIEGMADLVKSHL 326
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 20 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 74
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 75 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 130
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 131 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 189
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 190 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 245
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 246 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 304
Query: 323 ESL 325
+ L
Sbjct: 305 KKL 307
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 21 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 75
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 76 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 131
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 132 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 190
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 191 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 246
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 247 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 305
Query: 323 ESL 325
+ L
Sbjct: 306 KKL 308
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 21 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 75
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 76 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 131
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 132 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 190
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 191 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 246
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 247 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 305
Query: 323 ESL 325
+ L
Sbjct: 306 KKL 308
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 17 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 71
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 72 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 127
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 128 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 186
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 187 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 242
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 243 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 301
Query: 323 ESL 325
+ L
Sbjct: 302 KKL 304
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 20 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 74
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 75 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 130
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 131 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 189
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 190 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 245
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 246 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 304
Query: 323 ESL 325
+ L
Sbjct: 305 KKL 307
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 21 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 75
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+ + PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 76 DEITFKAYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 131
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SAH +P ++
Sbjct: 132 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLP-EKIK 190
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 191 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 246
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 247 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 305
Query: 323 ESL 325
+ L
Sbjct: 306 KKL 308
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 20 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 74
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 75 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 130
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SA +P ++
Sbjct: 131 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAASLP-EKIK 189
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 190 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 245
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 246 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 304
Query: 323 ESL 325
+ L
Sbjct: 305 KKL 307
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 21 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 75
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 76 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 131
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SA +P ++
Sbjct: 132 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAASLP-EKIK 190
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 191 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 246
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 247 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 305
Query: 323 ESL 325
+ L
Sbjct: 306 KKL 308
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + K+ Y +IGG SPL +IT+ QA L + L E
Sbjct: 20 DIERYYTHIRRGRKPEPEMLQDL-----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQ 74
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS-ISTSGSSLRLLESIFR 146
+ K Y+G+++ PF E+A+ ++ +DGIT+ V + L P FS S + R E
Sbjct: 75 DEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKE---- 130
Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
E E L + T + SWY ++T + +++ + D E M+ SA +P ++
Sbjct: 131 EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSACSLP-EKIK 189
Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKP-YTDETIIKLGQK 262
E GDPY ++ E LI E + Y + +QS P WL P D T QK
Sbjct: 190 EFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQK 245
Query: 263 GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322
G ++ + VP+ FV++H+E L + D E K + G + R + FI LA V+
Sbjct: 246 GYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY-RPEMPNAKPEFIDALATVVL 304
Query: 323 ESL 325
+ L
Sbjct: 305 KKL 307
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 20/300 (6%)
Query: 30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE-- 87
DI R R +KP + + + E Y +IGG SPL IT QA++L K L E
Sbjct: 20 DIERYYTHIRRGRKPSPEMLEDL-----TERYRAIGGISPLATITLEQAKKLEKRLNEVQ 74
Query: 88 KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 147
+ +Y+G+++ PF E+A++++ DGI + L L P +S + S + + E
Sbjct: 75 DEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQDAIALVLAPHYSTFSVKSYVGRAQ---EE 131
Query: 148 DEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEE 205
E L N+ I SWY+ +I + ++ E+ ++ SAH +P +
Sbjct: 132 AEKLGNLTIHGIDSWYKEPKFIQYWVDAVKSIYSGMSDAEREKAVLIVSAHSLPEKII-A 190
Query: 206 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-PVEWLKPYTDETIIKLGQK-G 263
GDPY ++ E D I E + N Y + +QS P W+ P + +L +K G
Sbjct: 191 MGDPYPDQLNETADYIARGAE---VAN-YAVGWQSAGNTPDPWIGPDVQDLTRELNEKYG 246
Query: 264 VKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIE 323
S + P+ FV+EH+E L + D E K + + G K+ R FI L D V++
Sbjct: 247 YTSFVYAPVGFVAEHLEVLYDNDFECKVVTDEIGA-KYYRPEMPNASDAFIDCLTDVVVK 305
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 262 KGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLA 318
+GV +LA+ F EH E L+ + +E KE+ K +E + G E+T I LA
Sbjct: 2 RGVVGVLALQGDF-REHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,682,896
Number of Sequences: 62578
Number of extensions: 466558
Number of successful extensions: 1302
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 26
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)