Query 015024
Match_columns 414
No_of_seqs 312 out of 1708
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 1E-105 3E-110 826.5 42.0 396 2-406 90-485 (485)
2 COG0276 HemH Protoheme ferro-l 100.0 1.1E-94 2.4E-99 710.8 36.2 314 2-326 6-319 (320)
3 PF00762 Ferrochelatase: Ferro 100.0 4.6E-93 1E-97 707.4 30.2 315 2-325 2-316 (316)
4 TIGR00109 hemH ferrochelatase. 100.0 3.7E-90 8E-95 688.8 36.0 316 2-325 6-321 (322)
5 KOG1321 Protoheme ferro-lyase 100.0 1.5E-87 3.2E-92 644.1 29.4 351 2-386 39-394 (395)
6 PRK12435 ferrochelatase; Provi 100.0 1.8E-83 3.8E-88 636.9 35.9 298 2-326 5-308 (311)
7 PRK00035 hemH ferrochelatase; 100.0 1.5E-82 3.2E-87 637.0 38.3 321 2-329 6-327 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 2.4E-43 5.2E-48 318.8 17.3 159 2-165 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 100.0 1.8E-40 3.8E-45 292.4 16.3 135 170-308 1-135 (135)
10 PRK02395 hypothetical protein; 99.7 1.3E-15 2.8E-20 149.8 24.2 235 64-327 7-262 (279)
11 PHA02337 putative high light i 99.5 2.4E-14 5.3E-19 95.5 3.4 33 373-405 1-33 (35)
12 COG2138 Sirohydrochlorin ferro 99.3 1.4E-10 3E-15 112.1 18.7 232 64-327 8-242 (245)
13 cd03409 Chelatase_Class_II Cla 99.2 7E-11 1.5E-15 97.8 11.3 87 191-294 2-88 (101)
14 cd03415 CbiX_CbiC Archaeal sir 99.1 1.1E-09 2.3E-14 95.5 12.0 109 64-178 6-124 (125)
15 PLN02757 sirohydrochlorine fer 99.1 2.8E-09 6E-14 96.2 14.1 115 64-183 19-135 (154)
16 PRK00923 sirohydrochlorin coba 99.1 8E-10 1.7E-14 95.9 10.0 111 64-179 7-126 (126)
17 PLN02757 sirohydrochlorine fer 99.0 1E-08 2.2E-13 92.5 15.6 124 186-328 11-135 (154)
18 cd03409 Chelatase_Class_II Cla 99.0 3.4E-09 7.5E-14 87.7 10.1 73 68-145 13-87 (101)
19 cd03414 CbiX_SirB_C Sirohydroc 99.0 1E-08 2.3E-13 87.5 12.6 110 64-179 6-116 (117)
20 PLN00014 light-harvesting-like 98.9 4.4E-10 9.5E-15 105.2 3.7 41 370-411 156-196 (250)
21 PF06180 CbiK: Cobalt chelatas 98.9 5E-08 1.1E-12 95.2 18.2 217 79-325 21-261 (262)
22 PRK05782 bifunctional sirohydr 98.8 6.8E-08 1.5E-12 97.2 15.4 115 63-183 11-135 (335)
23 PLN00084 photosystem II subuni 98.8 2.7E-09 5.8E-14 95.5 3.6 36 374-409 135-171 (214)
24 cd03414 CbiX_SirB_C Sirohydroc 98.8 2E-07 4.4E-12 79.5 14.8 115 190-324 2-116 (117)
25 PRK00923 sirohydrochlorin coba 98.7 2.5E-07 5.5E-12 80.2 12.5 115 190-323 3-125 (126)
26 PF01903 CbiX: CbiX; InterPro 98.7 4.4E-08 9.5E-13 81.9 7.5 102 67-174 2-105 (105)
27 cd03415 CbiX_CbiC Archaeal sir 98.6 7.5E-07 1.6E-11 77.7 13.5 115 189-323 1-124 (125)
28 cd03412 CbiK_N Anaerobic cobal 98.6 7.6E-07 1.6E-11 77.8 12.5 107 65-178 7-125 (127)
29 cd03416 CbiX_SirB_N Sirohydroc 98.3 2.8E-06 6E-11 70.7 9.2 94 64-162 5-100 (101)
30 PF01903 CbiX: CbiX; InterPro 98.3 2.3E-06 5.1E-11 71.5 7.3 98 210-319 8-105 (105)
31 PRK05782 bifunctional sirohydr 98.3 1.9E-05 4.1E-10 79.7 14.3 119 188-326 6-133 (335)
32 cd03412 CbiK_N Anaerobic cobal 98.2 3E-05 6.6E-10 67.7 13.8 119 190-324 2-126 (127)
33 cd03416 CbiX_SirB_N Sirohydroc 98.2 2.9E-05 6.2E-10 64.5 11.7 100 191-308 2-101 (101)
34 COG4822 CbiK Cobalamin biosynt 98.1 0.00051 1.1E-08 64.7 19.2 195 100-327 59-259 (265)
35 PRK02395 hypothetical protein; 98.0 4.6E-05 1E-09 75.1 11.9 113 65-184 142-264 (279)
36 cd03413 CbiK_C Anaerobic cobal 98.0 1.6E-05 3.4E-10 67.1 6.3 71 64-141 6-76 (103)
37 PRK00035 hemH ferrochelatase; 97.8 0.00028 6E-09 71.2 12.2 104 71-181 211-324 (333)
38 TIGR00109 hemH ferrochelatase. 97.8 0.00025 5.5E-09 71.4 11.8 103 66-180 205-321 (322)
39 COG0276 HemH Protoheme ferro-l 97.7 0.00069 1.5E-08 67.9 13.1 109 209-328 70-180 (320)
40 PLN02449 ferrochelatase 97.6 0.00059 1.3E-08 72.0 12.9 112 66-182 294-415 (485)
41 PRK12435 ferrochelatase; Provi 97.6 0.00096 2.1E-08 66.9 13.0 110 208-327 53-166 (311)
42 PF00504 Chloroa_b-bind: Chlor 97.4 4.2E-05 9E-10 68.9 0.6 33 370-402 25-57 (156)
43 PF00504 Chloroa_b-bind: Chlor 97.4 7.8E-05 1.7E-09 67.1 2.2 28 369-396 128-155 (156)
44 PF00762 Ferrochelatase: Ferro 97.4 0.0018 4E-08 65.1 11.7 113 206-328 63-178 (316)
45 cd03413 CbiK_C Anaerobic cobal 97.3 0.0013 2.8E-08 55.5 8.4 88 190-299 2-94 (103)
46 COG2138 Sirohydrochlorin ferro 97.2 0.0014 3.1E-08 63.5 8.9 118 190-328 4-121 (245)
47 PF06180 CbiK: Cobalt chelatas 97.1 0.002 4.4E-08 63.1 8.2 108 64-181 147-262 (262)
48 PLN00147 light-harvesting comp 96.9 0.00064 1.4E-08 66.0 3.5 33 376-408 202-234 (252)
49 PLN00100 light-harvesting comp 96.9 0.00055 1.2E-08 66.0 2.7 34 376-409 162-195 (246)
50 PLN00089 fucoxanthin-chlorophy 96.9 0.00069 1.5E-08 64.1 3.2 30 376-405 179-208 (209)
51 cd00419 Ferrochelatase_C Ferro 96.6 0.024 5.2E-07 50.0 10.4 59 66-126 35-101 (135)
52 PLN00120 fucoxanthin-chlorophy 96.6 0.0019 4.2E-08 60.8 3.6 26 376-401 170-195 (202)
53 PLN00099 light-harvesting comp 96.6 0.0017 3.6E-08 62.8 3.1 33 376-408 188-221 (243)
54 PLN00048 photosystem I light h 96.5 0.0016 3.4E-08 63.6 2.9 32 375-406 86-117 (262)
55 PLN00025 photosystem II light 96.5 0.0016 3.5E-08 63.5 2.9 33 376-408 208-240 (262)
56 PLN00101 Photosystem I light-h 96.5 0.0013 2.8E-08 63.7 1.7 33 376-408 202-234 (250)
57 PLN00048 photosystem I light h 96.4 0.0019 4.1E-08 63.1 2.8 33 376-408 212-244 (262)
58 PLN00097 photosystem I light h 96.4 0.0023 5E-08 61.8 2.9 33 376-408 199-231 (244)
59 PLN00171 photosystem light-ha 96.4 0.0027 5.8E-08 63.5 3.3 32 377-408 276-307 (324)
60 PLN00098 light-harvesting comp 96.3 0.0027 6E-08 62.1 3.2 33 376-408 217-249 (267)
61 PLN00187 photosystem II light- 96.3 0.0031 6.6E-08 62.3 3.3 33 376-408 237-269 (286)
62 PLN00101 Photosystem I light-h 96.2 0.0027 6E-08 61.5 2.5 30 375-404 92-121 (250)
63 PLN00098 light-harvesting comp 95.7 0.0075 1.6E-07 59.1 2.8 32 374-405 100-131 (267)
64 PLN00187 photosystem II light- 95.5 0.005 1.1E-07 60.7 0.9 29 373-401 132-160 (286)
65 PLN00170 photosystem II light- 95.3 0.012 2.6E-07 57.2 2.6 33 373-405 94-126 (255)
66 PLN00097 photosystem I light h 95.2 0.012 2.7E-07 56.8 2.5 31 373-403 81-111 (244)
67 PLN00025 photosystem II light 95.2 0.013 2.9E-07 57.2 2.6 30 374-403 91-120 (262)
68 PLN00147 light-harvesting comp 95.0 0.015 3.3E-07 56.5 2.6 29 375-403 84-112 (252)
69 PLN00170 photosystem II light- 94.9 0.013 2.8E-07 57.0 1.8 35 374-409 221-255 (255)
70 cd03411 Ferrochelatase_N Ferro 94.8 0.28 6.1E-06 44.3 10.1 93 207-309 63-158 (159)
71 KOG1321 Protoheme ferro-lyase 94.7 0.26 5.7E-06 49.3 10.3 78 248-328 138-220 (395)
72 PLN00171 photosystem light-ha 94.6 0.021 4.6E-07 57.2 2.4 31 374-404 148-178 (324)
73 PLN00100 light-harvesting comp 93.3 0.05 1.1E-06 52.7 2.3 26 374-399 73-98 (246)
74 COG4822 CbiK Cobalamin biosynt 93.1 0.82 1.8E-05 43.6 9.9 83 93-182 169-259 (265)
75 PLN00089 fucoxanthin-chlorophy 92.8 0.093 2E-06 49.8 3.3 29 373-401 74-102 (209)
76 PLN00099 light-harvesting comp 92.6 0.067 1.5E-06 51.8 2.1 29 371-399 79-107 (243)
77 PRK10481 hypothetical protein; 86.0 16 0.00035 35.1 12.5 136 92-284 66-203 (224)
78 COG1453 Predicted oxidoreducta 84.9 14 0.0003 38.1 12.0 165 74-273 32-205 (391)
79 PLN00120 fucoxanthin-chlorophy 82.6 0.26 5.7E-06 46.6 -1.2 24 374-397 64-87 (202)
80 PF06309 Torsin: Torsin; Inte 78.6 7.1 0.00015 34.3 6.4 67 162-241 27-93 (127)
81 PF04748 Polysacc_deac_2: Dive 78.3 50 0.0011 31.3 12.7 89 90-178 19-117 (213)
82 PF04273 DUF442: Putative phos 76.1 13 0.00029 31.6 7.3 68 249-323 14-84 (110)
83 PF01297 TroA: Periplasmic sol 71.9 58 0.0013 31.1 11.6 198 66-322 29-250 (256)
84 PRK07239 bifunctional uroporph 70.7 1E+02 0.0022 31.5 13.7 47 77-123 21-71 (381)
85 COG2861 Uncharacterized protei 69.4 1.2E+02 0.0025 29.7 12.8 88 91-178 52-149 (250)
86 PF08645 PNK3P: Polynucleotide 61.9 23 0.0005 31.9 6.2 63 246-308 28-92 (159)
87 PLN02591 tryptophan synthase 59.9 49 0.0011 32.3 8.5 73 234-321 82-154 (250)
88 TIGR00290 MJ0570_dom MJ0570-re 58.5 1.5E+02 0.0033 28.4 11.4 119 112-269 20-140 (223)
89 COG0621 MiaB 2-methylthioadeni 57.7 58 0.0013 34.5 9.1 140 104-273 174-335 (437)
90 TIGR00262 trpA tryptophan synt 54.8 2.1E+02 0.0046 27.8 16.2 136 91-270 87-227 (256)
91 COG0406 phoE Broad specificity 54.1 1.8E+02 0.0038 26.6 11.6 54 67-125 26-82 (208)
92 TIGR01856 hisJ_fam histidinol 53.7 2E+02 0.0043 27.7 11.6 65 250-322 185-249 (253)
93 PF05990 DUF900: Alpha/beta hy 53.1 71 0.0015 30.5 8.3 135 171-321 3-150 (233)
94 cd01994 Alpha_ANH_like_IV This 52.9 1.9E+02 0.0042 26.8 14.6 85 154-269 59-143 (194)
95 PRK13111 trpA tryptophan synth 51.6 1E+02 0.0022 30.2 9.1 74 234-322 93-166 (258)
96 TIGR00762 DegV EDD domain prot 50.5 2.2E+02 0.0048 27.7 11.5 113 99-228 58-184 (275)
97 PRK09856 fructoselysine 3-epim 49.0 2.5E+02 0.0053 26.8 15.4 160 100-273 10-183 (275)
98 PRK13125 trpA tryptophan synth 47.9 1.8E+02 0.0039 27.9 10.2 133 159-321 11-152 (244)
99 COG0528 PyrH Uridylate kinase 43.6 2.3E+02 0.005 27.6 10.0 120 161-290 22-155 (238)
100 PTZ00397 macrophage migration 43.6 79 0.0017 26.6 6.2 35 210-247 74-108 (116)
101 PRK09545 znuA high-affinity zi 43.4 3.5E+02 0.0076 27.0 12.0 137 160-322 145-304 (311)
102 PRK03906 mannonate dehydratase 43.1 42 0.00091 34.9 5.3 66 245-312 5-70 (385)
103 PF01902 ATP_bind_4: ATP-bindi 42.0 1.1E+02 0.0023 29.3 7.5 49 207-269 92-140 (218)
104 COG0761 lytB 4-Hydroxy-3-methy 41.3 43 0.00093 33.4 4.7 39 186-224 65-113 (294)
105 COG4750 LicC CTP:phosphocholin 40.9 29 0.00064 32.9 3.3 48 65-127 9-56 (231)
106 KOG4277 Uncharacterized conser 40.9 84 0.0018 31.8 6.6 140 137-314 29-169 (468)
107 cd03174 DRE_TIM_metallolyase D 40.5 3.2E+02 0.007 25.8 11.8 147 106-280 77-234 (265)
108 PF02645 DegV: Uncharacterised 40.2 1.5E+02 0.0032 29.0 8.4 60 101-168 61-123 (280)
109 CHL00200 trpA tryptophan synth 38.7 1.9E+02 0.0042 28.3 8.9 90 213-322 78-168 (263)
110 KOG0434 Isoleucyl-tRNA synthet 37.8 60 0.0013 36.4 5.5 131 143-282 29-188 (1070)
111 KOG2170 ATPase of the AAA+ sup 37.8 68 0.0015 32.6 5.5 52 162-226 84-135 (344)
112 TIGR00539 hemN_rel putative ox 37.1 4.6E+02 0.0099 26.5 16.7 136 166-321 30-177 (360)
113 PF08029 HisG_C: HisG, C-termi 36.8 32 0.00069 27.3 2.5 25 101-125 48-72 (75)
114 TIGR01019 sucCoAalpha succinyl 34.8 60 0.0013 32.3 4.7 44 249-299 73-116 (286)
115 PF07799 DUF1643: Protein of u 34.4 2.5E+02 0.0055 24.1 8.2 32 101-132 30-61 (136)
116 cd00951 KDGDH 5-dehydro-4-deox 33.8 1.6E+02 0.0036 28.9 7.7 65 251-318 82-147 (289)
117 TIGR00695 uxuA mannonate dehyd 33.8 75 0.0016 33.2 5.3 65 246-312 6-70 (394)
118 TIGR00262 trpA tryptophan synt 33.5 3.9E+02 0.0085 25.9 10.1 92 212-322 72-164 (256)
119 TIGR02990 ectoine_eutA ectoine 33.0 86 0.0019 30.3 5.3 57 245-311 102-158 (239)
120 TIGR03470 HpnH hopanoid biosyn 32.9 1.8E+02 0.004 29.0 8.0 45 85-129 158-204 (318)
121 PRK05678 succinyl-CoA syntheta 32.1 68 0.0015 32.0 4.6 44 249-299 75-118 (291)
122 cd01017 AdcA Metal binding pro 32.0 4.8E+02 0.01 25.3 11.9 136 160-321 113-274 (282)
123 PF13380 CoA_binding_2: CoA bi 31.9 80 0.0017 26.8 4.4 39 250-299 66-104 (116)
124 PTZ00322 6-phosphofructo-2-kin 31.5 2.2E+02 0.0047 31.7 8.9 59 52-113 425-486 (664)
125 PF10673 DUF2487: Protein of u 31.0 1.1E+02 0.0024 27.4 5.3 51 72-125 35-93 (142)
126 cd02167 NMNAT_NadR Nicotinamid 30.4 4E+02 0.0086 23.8 10.3 95 99-198 7-110 (158)
127 PRK05628 coproporphyrinogen II 30.2 6E+02 0.013 25.8 16.6 118 166-299 36-159 (375)
128 CHL00200 trpA tryptophan synth 30.1 5.4E+02 0.012 25.2 15.3 136 91-269 91-230 (263)
129 PF13684 Dak1_2: Dihydroxyacet 29.9 79 0.0017 31.8 4.7 45 81-126 108-152 (313)
130 cd07910 MiaE MiaE tRNA-modifyi 29.8 13 0.00028 34.5 -0.8 59 155-218 37-95 (180)
131 cd00952 CHBPH_aldolase Trans-o 29.6 1.8E+02 0.0039 29.0 7.2 66 250-318 87-160 (309)
132 PRK04147 N-acetylneuraminate l 29.3 2.8E+02 0.006 27.3 8.4 52 91-146 73-127 (293)
133 TIGR02717 AcCoA-syn-alpha acet 29.1 1.3E+02 0.0028 31.7 6.4 49 250-299 75-123 (447)
134 cd01018 ZntC Metal binding pro 29.1 5.3E+02 0.011 24.8 12.7 136 159-322 111-262 (266)
135 KOG0460 Mitochondrial translat 28.8 1.2E+02 0.0026 31.4 5.7 50 250-299 156-206 (449)
136 cd06335 PBP1_ABC_ligand_bindin 28.8 2.8E+02 0.0061 27.4 8.5 18 102-119 179-196 (347)
137 cd06592 GH31_glucosidase_KIAA1 28.5 1.1E+02 0.0025 30.3 5.5 68 209-278 27-98 (303)
138 PRK10076 pyruvate formate lyas 28.5 3E+02 0.0064 26.0 8.1 35 289-323 119-156 (213)
139 TIGR01244 conserved hypothetic 28.5 3.2E+02 0.0069 23.6 7.8 67 250-322 15-83 (135)
140 PRK06740 histidinol-phosphatas 28.4 6.3E+02 0.014 25.5 14.6 57 53-122 21-80 (331)
141 PRK04147 N-acetylneuraminate l 28.3 2.1E+02 0.0047 28.1 7.5 68 249-319 82-156 (293)
142 COG0159 TrpA Tryptophan syntha 28.0 2.3E+02 0.0051 28.0 7.4 62 250-321 109-170 (265)
143 KOG4132 Uroporphyrinogen III s 28.0 5.8E+02 0.013 24.9 10.5 203 69-324 34-254 (260)
144 TIGR03249 KdgD 5-dehydro-4-deo 27.8 2.4E+02 0.0052 27.8 7.7 66 251-319 84-153 (296)
145 PRK12677 xylose isomerase; Pro 27.6 2.2E+02 0.0048 29.5 7.6 63 234-299 13-82 (384)
146 PLN02727 NAD kinase 27.4 2.4E+02 0.0051 32.9 8.2 87 233-325 241-340 (986)
147 cd06595 GH31_xylosidase_XylS-l 26.8 4.9E+02 0.011 25.6 9.7 67 250-324 74-144 (292)
148 PF08915 tRNA-Thr_ED: Archaea- 26.7 2.5E+02 0.0054 25.1 6.7 45 260-305 68-115 (138)
149 COG4860 Uncharacterized protei 26.7 99 0.0022 27.8 4.1 52 269-323 102-154 (170)
150 PRK05660 HemN family oxidoredu 26.6 7.1E+02 0.015 25.5 16.2 117 166-299 37-158 (378)
151 PF06821 Ser_hydrolase: Serine 26.5 85 0.0019 28.5 3.9 74 120-222 1-74 (171)
152 cd00408 DHDPS-like Dihydrodipi 26.3 3.6E+02 0.0078 26.0 8.6 52 91-146 66-120 (281)
153 PRK03620 5-dehydro-4-deoxygluc 25.3 3.5E+02 0.0075 26.8 8.4 52 90-146 75-129 (303)
154 PF00701 DHDPS: Dihydrodipicol 25.2 4.2E+02 0.0092 25.8 8.9 53 90-146 69-124 (289)
155 TIGR00539 hemN_rel putative ox 25.0 1.5E+02 0.0033 30.1 5.8 54 64-121 57-115 (360)
156 TIGR03162 ribazole_cobC alpha- 25.0 3E+02 0.0065 24.2 7.2 51 67-124 21-74 (177)
157 cd01016 TroA Metal binding pro 24.7 5.2E+02 0.011 25.2 9.4 55 160-226 101-155 (276)
158 TIGR03455 HisG_C-term ATP phos 24.5 79 0.0017 26.4 3.0 25 101-125 72-96 (100)
159 COG2099 CobK Precorrin-6x redu 24.5 3.1E+02 0.0068 27.0 7.5 60 205-269 72-133 (257)
160 PF13653 GDPD_2: Glycerophosph 24.3 62 0.0013 21.2 1.8 23 99-121 3-25 (30)
161 TIGR03822 AblA_like_2 lysine-2 23.9 7.4E+02 0.016 24.8 13.5 108 205-323 143-256 (321)
162 PRK05367 glycine dehydrogenase 23.7 84 0.0018 36.6 4.0 140 251-398 393-555 (954)
163 PRK08599 coproporphyrinogen II 23.4 7.9E+02 0.017 24.9 16.5 140 166-323 31-178 (377)
164 PRK03620 5-dehydro-4-deoxygluc 23.4 3.3E+02 0.0071 27.0 7.7 65 251-318 86-154 (303)
165 TIGR01364 serC_1 phosphoserine 23.2 4.7E+02 0.01 26.4 9.0 73 207-298 32-104 (349)
166 TIGR02631 xylA_Arthro xylose i 23.1 1.7E+02 0.0037 30.3 5.8 64 234-299 14-83 (382)
167 COG1509 KamA Lysine 2,3-aminom 22.8 8.7E+02 0.019 25.2 11.3 104 205-322 165-277 (369)
168 TIGR03249 KdgD 5-dehydro-4-deo 22.7 4.1E+02 0.0089 26.1 8.3 52 90-146 73-127 (296)
169 PRK08609 hypothetical protein; 22.6 1E+03 0.022 26.0 12.7 37 91-127 337-373 (570)
170 COG1350 Predicted alternative 22.2 2.7E+02 0.0058 28.8 6.6 61 54-122 65-132 (432)
171 PRK12360 4-hydroxy-3-methylbut 22.2 1.7E+02 0.0037 29.1 5.4 37 188-224 69-115 (281)
172 cd06343 PBP1_ABC_ligand_bindin 22.1 2.8E+02 0.0061 27.3 7.1 45 74-118 157-201 (362)
173 smart00729 Elp3 Elongator prot 22.1 3E+02 0.0064 24.2 6.6 37 92-128 151-192 (216)
174 COG1213 Predicted sugar nucleo 22.1 71 0.0015 31.1 2.5 31 250-280 32-62 (239)
175 PF13377 Peripla_BP_3: Peripla 21.9 2.6E+02 0.0056 23.7 6.0 40 257-299 2-41 (160)
176 cd00954 NAL N-Acetylneuraminic 21.8 3.7E+02 0.008 26.3 7.7 67 250-319 80-154 (288)
177 PF13204 DUF4038: Protein of u 21.7 5.1E+02 0.011 25.5 8.7 87 105-200 90-189 (289)
178 COG0635 HemN Coproporphyrinoge 21.6 9.4E+02 0.02 25.1 13.6 139 166-322 65-215 (416)
179 TIGR00674 dapA dihydrodipicoli 21.3 4.9E+02 0.011 25.4 8.4 52 91-146 67-121 (285)
180 COG0646 MetH Methionine syntha 21.1 4E+02 0.0088 26.9 7.6 147 153-322 156-310 (311)
181 TIGR00683 nanA N-acetylneurami 21.0 5.7E+02 0.012 25.1 8.9 74 75-152 54-130 (290)
182 PF03786 UxuA: D-mannonate deh 20.8 1.2E+02 0.0026 31.2 4.0 64 246-311 6-71 (351)
183 PRK13463 phosphatase PhoE; Pro 20.7 6.6E+02 0.014 23.0 10.1 41 67-113 26-68 (203)
184 TIGR00674 dapA dihydrodipicoli 20.6 3.4E+02 0.0073 26.5 7.1 68 249-319 76-150 (285)
185 cd00950 DHDPS Dihydrodipicolin 20.3 3.4E+02 0.0075 26.3 7.1 66 250-318 79-151 (284)
186 cd00408 DHDPS-like Dihydrodipi 20.3 3.9E+02 0.0084 25.8 7.5 67 250-319 76-149 (281)
187 PRK14457 ribosomal RNA large s 20.2 2.2E+02 0.0048 29.1 5.9 41 283-323 239-282 (345)
188 cd06348 PBP1_ABC_ligand_bindin 20.0 3E+02 0.0065 26.9 6.7 49 73-121 149-197 (344)
189 PLN02414 glycine dehydrogenase 20.0 1.7E+02 0.0037 34.3 5.5 43 250-293 419-464 (993)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=1.2e-105 Score=826.48 Aligned_cols=396 Identities=82% Similarity=1.247 Sum_probs=369.2
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
+||||.|+|+|++.++|++||+|||+||+||++|+++|++|++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 90 ~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~~Qa~~L 169 (485)
T PLN02449 90 VGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDEQAEAL 169 (485)
T ss_pred eEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
++.|++.+.+++|++|||||+|+++|++++|+++|+++||+||||||||.+||||+++.+.+..++......+++++|++
T Consensus 170 q~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~ 249 (485)
T PLN02449 170 AKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 249 (485)
T ss_pred HHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEecc
Confidence 99998777789999999999999999999999999999999999999999999999999988886544333568899999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
||+||.||+|++++|++++++.+.+++++|||||||+|+++++++||||++||++|+++|+++|+.++..++|.++||||
T Consensus 250 ~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR 329 (485)
T PLN02449 250 WYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSR 329 (485)
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCC
Confidence 99999999999999999998876566789999999999999966799999999999999999998754224699999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024 242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 321 (414)
Q Consensus 242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV 321 (414)
+||.+||+|+|+|+|++|+++|+|+|+||||||++||+|||||||+|++++|+++|+++|.|+||||+||.||++|+++|
T Consensus 330 ~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV 409 (485)
T PLN02449 330 VGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAV 409 (485)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccccchhhhhccccCcchhhhhhcchhhccCCCCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHhCc
Q 015024 322 IESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGE 401 (414)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~E~~ngR~Am~g~~~~~~~e~~~g~ 401 (414)
.+++....+...+..+.+..+++.+.|++.+.+++..++.+. |...|.||++. +||+||++++..|++||+
T Consensus 410 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 480 (485)
T PLN02449 410 IEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELP-PVAVWEWGWTK--------AAMLAVLLLLVLEVTSGF 480 (485)
T ss_pred HHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCC-Cchhhhhcccc--------hHHHHHHHHHHHHHHcCC
Confidence 999876444455666677778888999999999998888887 99999999997 999999999999999999
Q ss_pred chhhh
Q 015024 402 GFLHQ 406 (414)
Q Consensus 402 ~~~~~ 406 (414)
|.+++
T Consensus 481 ~~~~~ 485 (485)
T PLN02449 481 GNLHQ 485 (485)
T ss_pred CcCCC
Confidence 99874
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-94 Score=710.80 Aligned_cols=314 Identities=42% Similarity=0.669 Sum_probs=298.5
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.|+||.|||||+++++|.+||.|||+||+|+++|+++| ++ |+++|++.|++|++++|+.|||+|||+.+|++|+++|
T Consensus 6 ~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~--~~-l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q~~~L 82 (320)
T COG0276 6 TAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLW--YP-LAGIILPLRLKKVAKNYESIGGKSPLNVITRAQAAAL 82 (320)
T ss_pred eEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhh--hh-hhhhhhhhccHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 68999999999999999999999999999999998765 66 9999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
+++|+ .++++|++|||||+|++++++++|+++|+++||++|||||||++||||+.+++.+++++.+ ..+++++|++
T Consensus 83 ~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~~I~~ 158 (320)
T COG0276 83 EERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKISTIPD 158 (320)
T ss_pred HHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceEEecC
Confidence 99997 3489999999999999999999999999999999999999999999999999999997765 3468999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
||+||.||+||+++|++.+++++ .++.+|||||||+|++++ ++||||.+||++|+++|+++||+.. ++|.++||||
T Consensus 159 ~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~-~~GDpY~~q~~~t~~li~e~lg~~~--~~~~~~~QS~ 234 (320)
T COG0276 159 YYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYI-DEGDPYPQQCQETTRLIAEALGLPE--EEYDLTFQSR 234 (320)
T ss_pred ccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhh-hcCCchHHHHHHHHHHHHHHcCCCc--hheeEEeecC
Confidence 99999999999999999999886 366789999999999999 7799999999999999999999743 3599999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024 242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 321 (414)
Q Consensus 242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV 321 (414)
+|+++||+|+|+|++++|.++|+|+|+|+||||++||+|||+|||+|+++.++++|+.+|.|+||+||||+||++|+++|
T Consensus 235 ~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv 314 (320)
T COG0276 235 FGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLV 314 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 015024 322 IESLP 326 (414)
Q Consensus 322 ~~~l~ 326 (414)
++.+.
T Consensus 315 ~~~~~ 319 (320)
T COG0276 315 RELLN 319 (320)
T ss_pred HHHhc
Confidence 98764
No 3
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=4.6e-93 Score=707.37 Aligned_cols=315 Identities=43% Similarity=0.675 Sum_probs=274.7
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.||||.|+|+|++.++|.+||++||+|++||++| ++| +++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 2 ~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~l 78 (316)
T PF00762_consen 2 TAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEAL 78 (316)
T ss_dssp EEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 4899999999999999999999999999999999 654 7899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
++.|++++.+++|++|||||+|+|++++++|+++|+++|+++|||||||.+||||+++.+.+++++.. +.+++++|++
T Consensus 79 ~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~~ 156 (316)
T PF00762_consen 79 QQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIPS 156 (316)
T ss_dssp HHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE--
T ss_pred HHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeCC
Confidence 99999876789999999999999999999999999999999999999999999999999999987643 4568899999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
|++||.||+|++++|+++++.++.++.++|||||||+|+++++++||||.+||++|+++|+++++.. +|.++||||
T Consensus 157 ~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~----~~~~~fQS~ 232 (316)
T PF00762_consen 157 FYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLP----EWRLAFQSR 232 (316)
T ss_dssp -TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTS----SEEEEEES-
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCC----ceEEEEECC
Confidence 9999999999999999999887433457899999999999994479999999999999999999764 399999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024 242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 321 (414)
Q Consensus 242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV 321 (414)
+|+.+||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+++.|+++|+++|.|+|||||||.||++|+++|
T Consensus 233 ~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~La~~v 312 (316)
T PF00762_consen 233 FGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEALADLV 312 (316)
T ss_dssp SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 015024 322 IESL 325 (414)
Q Consensus 322 ~~~l 325 (414)
.+++
T Consensus 313 ~~~~ 316 (316)
T PF00762_consen 313 REHL 316 (316)
T ss_dssp HHHH
T ss_pred HhCc
Confidence 9864
No 4
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=3.7e-90 Score=688.82 Aligned_cols=316 Identities=43% Similarity=0.731 Sum_probs=296.9
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.|+||.|+|+|+|.++|++||.|||+|||||++|+++| +++|+++|+++|++|++++|++|||+|||+.+|++|+++|
T Consensus 6 ~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q~~~l 83 (322)
T TIGR00109 6 TGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQAHAL 83 (322)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 59999999999999999999999999999999998654 7899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
++.|++. .+++|++|||||+|+|++++++|+++|+++|+++|||||||.+||||+++++.+++.+.... .+++++|++
T Consensus 84 ~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~~i~~ 161 (322)
T TIGR00109 84 EKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTISVIES 161 (322)
T ss_pred HHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEEEeCc
Confidence 9999754 57999999999999999999999999999999999999999999999999999998765432 147899999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
|++||.||+|++++|++++++.+.+++++|||||||||++++ ++||||.+||.+|+++|+++++.. .+|.++|||+
T Consensus 162 ~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~-~~Gd~Y~~~~~~ta~~l~~~l~~~---~~~~~~fQS~ 237 (322)
T TIGR00109 162 WYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYV-DEGDPYPAECEATTRLIAEKLGFP---NEYRLTWQSR 237 (322)
T ss_pred cccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHh-hCCCChHHHHHHHHHHHHHHcCCC---CCeEEEEeCC
Confidence 999999999999999999987755566689999999999999 899999999999999999999732 3599999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024 242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 321 (414)
Q Consensus 242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV 321 (414)
+|+.+||+|+|+++|++|+++|+|+|+|+||||++||+|||||||+|+++.|.+.|+++|.|+|||||||.||++|+++|
T Consensus 238 ~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v 317 (322)
T TIGR00109 238 VGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAMATLV 317 (322)
T ss_pred CCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhC
Q 015024 322 IESL 325 (414)
Q Consensus 322 ~~~l 325 (414)
.+++
T Consensus 318 ~~~~ 321 (322)
T TIGR00109 318 KKKL 321 (322)
T ss_pred HHhh
Confidence 9864
No 5
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-87 Score=644.14 Aligned_cols=351 Identities=51% Similarity=0.775 Sum_probs=324.3
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.++||.|+|||+|-++|++||.++|.|++||.||+ ++|+-|+.+|+++|.+|+.+.|+.|||||||+.+|+.|++.+
T Consensus 39 tgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q~~~m 115 (395)
T KOG1321|consen 39 TGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQAEEM 115 (395)
T ss_pred ceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHHHHHH
Confidence 37899999999999999999999999999999996 679999999999999999999999999999999999999999
Q ss_pred HHHhhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEE
Q 015024 82 RKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTV 158 (414)
Q Consensus 82 ~~~L~~~~---~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~ 158 (414)
.+.|++.. .+..+|+|||||+|+.++++++|+++|++|+|++|+|||||++||||+++.+.+.+++.....++++.+
T Consensus 116 ~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~~wsi 195 (395)
T KOG1321|consen 116 CKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKWSI 195 (395)
T ss_pred HHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCCceEe
Confidence 99998754 457899999999999999999999999999999999999999999999999999988777677899999
Q ss_pred eCCCCCChHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEE
Q 015024 159 IPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTL 236 (414)
Q Consensus 159 i~~~~~~p~yI~a~a~~I~~~l~~~~~~--~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~l 236 (414)
|++|+.|++||++++++|++.|+.++.+ +++.++|||||+|++++ .+||||+.++.+|+.+||++|+.. |+|++
T Consensus 196 IdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~V-n~GDpY~~Ei~atv~~iMeeL~~~---N~y~l 271 (395)
T KOG1321|consen 196 IDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVV-NAGDPYPAEIAATVDLIMEELKYK---NPYRL 271 (395)
T ss_pred eccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHH-hcCCCcHHHHHHHHHHHHHHhccC---Ccchh
Confidence 9999999999999999999999998765 88999999999999999 699999999999999999999764 78999
Q ss_pred EEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHH
Q 015024 237 AYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISD 316 (414)
Q Consensus 237 afQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~ 316 (414)
+||||+||.+||+|+|+++++.|.++|.|+++.|||+|+|||+|||+|||+||++.+++.|++++.|+++||.+|.||++
T Consensus 272 awQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~a~k~gve~~~Rv~sln~~p~fI~~ 351 (395)
T KOG1321|consen 272 AWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEEALKKGVENWKRVESLNGNPTFIEG 351 (395)
T ss_pred hhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHHHHHHhhhhheeccCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccchhhhhccccCcchhhhhhcchhhccCCCCCCcccccCCcchhhhhhhHHHH
Q 015024 317 LADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAM 386 (414)
Q Consensus 317 La~lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~E~~ngR~Am 386 (414)
|+|+|.+++....+.+.+. ++..+.|.+.. ...++.|+|+++|
T Consensus 352 lADlV~ehL~s~~~~s~q~----------------l~~~~~~~ne~-----------~~e~~s~~~~~~~ 394 (395)
T KOG1321|consen 352 LADLVAEHLKSNQAYSNQF----------------LARCPGCSNEP-----------CKEAKSWFGNHES 394 (395)
T ss_pred HHHHHHHhhhhhhhcchhh----------------hhhCcCcCChh-----------hhHHHHHHHHhhc
Confidence 9999999998765443332 23333444332 4478899999876
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=1.8e-83 Score=636.88 Aligned_cols=298 Identities=30% Similarity=0.500 Sum_probs=271.6
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.|+||+|||||++.+||++||+|++.|| .|. +..| .+++++|++|||+|||+.+|++|+++|
T Consensus 5 ~avlll~~GgP~~~~~V~pfL~ni~~g~----~~~-----~~~l---------~~~~~~Y~~iGG~SPL~~~T~~qa~~L 66 (311)
T PRK12435 5 IGLLVMAYGTPYKEEDIERYYTHIRHGR----KPS-----EEML---------QDLKDRYEAIGGISPLAKITDEQAKAL 66 (311)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHhcCCC----CCC-----HHHH---------HHHHHHHHHhCCcChHHHHHHHHHHHH
Confidence 5999999999999999999999999998 222 2233 457999999999999999999999999
Q ss_pred HHHhhcc--CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEe
Q 015024 82 RKSLWEK--NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVI 159 (414)
Q Consensus 82 ~~~L~~~--~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i 159 (414)
++.|++. +.+++|++|||||+|++++++++|+++||++|++||||||||.+||||+.+.+.+..+. ...+++++|
T Consensus 67 ~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~---~~~~~~~~i 143 (311)
T PRK12435 67 EKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEK---LGGPTITSI 143 (311)
T ss_pred HHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhcc---cCCCeEEEe
Confidence 9999764 34699999999999999999999999999999999999999999999998877765543 234678999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEE
Q 015024 160 PSWYQREGYITAMANLIEKELQNFDS--PEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLA 237 (414)
Q Consensus 160 ~~~~~~p~yI~a~a~~I~~~l~~~~~--~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~la 237 (414)
++||+||.||+|++++|++++++.+. +++++|||||||||++++ ++||||++||++|+++|+++++.. +|.++
T Consensus 144 ~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i-~~GDpY~~q~~~t~~~v~~~l~~~----~~~l~ 218 (311)
T PRK12435 144 ESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKII-AAGDPYPDQLEETADLIAEQANVE----HYAIG 218 (311)
T ss_pred CCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHh-hCCCCHHHHHHHHHHHHHHHcCCC----CCeEe
Confidence 99999999999999999999987643 255789999999999999 799999999999999999999864 39999
Q ss_pred EecCc-CCCCCCCCcHHHHHHHHhhc-CCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHH
Q 015024 238 YQSRV-GPVEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFIS 315 (414)
Q Consensus 238 fQSr~-G~~~WL~P~t~d~L~~L~~~-G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~ 315 (414)
||||+ |+.+||+|+|+|+|++|+++ |+|+|+|+||||++||+|||||||+|+++.|+++|++ |.|+||+||||.||+
T Consensus 219 yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~-~~r~~~lN~~p~fi~ 297 (311)
T PRK12435 219 WQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAK-YYRPEMPNADPLFID 297 (311)
T ss_pred eecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCc-EEeccCCCCCHHHHH
Confidence 99996 79999999999999999988 9999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHhCC
Q 015024 316 DLADAVIESLP 326 (414)
Q Consensus 316 ~La~lV~~~l~ 326 (414)
+|+++|.+++.
T Consensus 298 ~La~lv~~~~~ 308 (311)
T PRK12435 298 ALADVVLKKLK 308 (311)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=1.5e-82 Score=636.96 Aligned_cols=321 Identities=42% Similarity=0.678 Sum_probs=301.2
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.|+||.|+|+|+|.++|++||.|||+||+|+++|+++| +++|+++|+++|++|++++|++||+||||+.+|++|+++|
T Consensus 6 ~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~--~~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~~~L 83 (333)
T PRK00035 6 DAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLW--QPLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQAEAL 83 (333)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHH--HHHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 58999999999999999999999999999999999876 6899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
++.|++.+.++.|++||+||+|+++++|++|+++|+++|+++|||||||.+|+||+.+++.+.+++.+. .++++++++
T Consensus 84 ~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~i~~ 161 (333)
T PRK00035 84 QAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRFIRS 161 (333)
T ss_pred HHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEEeCC
Confidence 999987677899999999999999999999999999999999999999999999999999988876542 468899999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCC-CceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEec
Q 015024 162 WYQREGYITAMANLIEKELQNFDSP-EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQS 240 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~-~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQS 240 (414)
|++||.|+++++++|++++++.+.+ ++++||||+||+|.+++ ++||||.++|++|+++++++++... .+|.+||||
T Consensus 162 ~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~-~~gd~Y~~~~~~t~~~l~~~l~~~~--~~~~~~fqs 238 (333)
T PRK00035 162 YYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYI-DKGDPYQQQCEETARLLAEALGLPD--EDYDLTYQS 238 (333)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHh-hcCCChHHHHHHHHHHHHHHhCCCC--CCeEEEeeC
Confidence 9999999999999999999776433 45789999999999999 7999999999999999999998632 259999999
Q ss_pred CcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHH
Q 015024 241 RVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADA 320 (414)
Q Consensus 241 r~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~l 320 (414)
++|+.+||+|+++++|++|+++|+|+|+|+|+||++||+||++|||+|+++.+.++|+++|.|+||||+||.|+++|+++
T Consensus 239 ~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l~~~ 318 (333)
T PRK00035 239 RFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEALADL 318 (333)
T ss_pred CCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhCCCCC
Q 015024 321 VIESLPYVG 329 (414)
Q Consensus 321 V~~~l~~~~ 329 (414)
|.+++.+..
T Consensus 319 v~~~~~~~~ 327 (333)
T PRK00035 319 VRENLQGWP 327 (333)
T ss_pred HHHHhcCCc
Confidence 999876653
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=2.4e-43 Score=318.76 Aligned_cols=159 Identities=40% Similarity=0.586 Sum_probs=149.0
Q ss_pred ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024 2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 81 (414)
.||||.|+|+|++.++|++||.+||+|++||++|.++ |++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 4899999999999999999999999999999999754 7899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024 82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS 161 (414)
Q Consensus 82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~ 161 (414)
++.|++.+.++.|++|||||+|++++++++|+++|+++|+++|||||||.+||||+++.+.+.+.+... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987656799999999999999999999999999999999999999999999999999998876533 347899999
Q ss_pred CCCC
Q 015024 162 WYQR 165 (414)
Q Consensus 162 ~~~~ 165 (414)
||+|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9986
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=1.8e-40 Score=292.41 Aligned_cols=135 Identities=46% Similarity=0.803 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCC
Q 015024 170 TAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLK 249 (414)
Q Consensus 170 ~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~ 249 (414)
++++++|+++++... ++++.|||||||+|++++ ++||||.+||.+|+++|+++++... .+|.++||||+|+++||+
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~-~~gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~ 76 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDI-KKGDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLE 76 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHh-hCCCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCC
Confidence 478999999998764 355689999999999999 7999999999999999999998532 359999999999999999
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCC
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 308 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lN 308 (414)
|+|+|+|++|+++|+++|+|+||||++||+||++|||+|+++.+.++|+.+|.|+||||
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999988999999998
No 10
>PRK02395 hypothetical protein; Provisional
Probab=99.72 E-value=1.3e-15 Score=149.77 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=172.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 143 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e 143 (414)
+|.||+......+..+.+.+.|.+++....|..||--.+|+++++++++. .++|+|+|+| .+...++.+++++
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlf----L~~G~Hv~~DIP~ 79 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLF----ISEGYFTEQVIPR 79 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeE----eccccchhhhhHH
Confidence 48899866666666777777776555445788888669999999999985 5899999999 3666677889998
Q ss_pred HHHhc-----cccC------CcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHH
Q 015024 144 IFRED-----EYLV------NMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKA 212 (414)
Q Consensus 144 ~~~~~-----~~~~------~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~ 212 (414)
.+... ...+ +.++++.++++.||.+++++.+++++.....+.+++..+|+.+||.+.. .-...
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~------~~a~~ 153 (279)
T PRK02395 80 ELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERN------ENSAK 153 (279)
T ss_pred HhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCc------hhHHH
Confidence 88531 1112 6788999999999999999999999887543223456799999999421 11456
Q ss_pred HHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccc-cchhhHHHHHHHHHH
Q 015024 213 EMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVS-EHIETLEEIDVEYKE 291 (414)
Q Consensus 213 ~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvs-D~lETl~Eid~e~~e 291 (414)
.+.+.++.++++.+.. .+.+||.. .+|+++++++++. .++|+|+|+.++. +|. ..||..+...
T Consensus 154 ~~~~~a~~l~~~~~~~----~V~~~fle-------~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~--~~DIp~~~~~ 217 (279)
T PRK02395 154 AIYYHADRLRERGRFA----EVEALFLD-------EEPEVDDWPDLFE---ADDVVVVPLFIADGFHT--QEDIPEDMGL 217 (279)
T ss_pred HHHHHHHHHHhhCCCC----eEEEEecc-------CCCCHHHHHHHhC---CCeEEEEeeecccCcch--HhHHHHHHHH
Confidence 6777788877764432 37889976 2599999998874 4899999988444 444 3455544432
Q ss_pred HHH-----hcC----CeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 015024 292 LAL-----KSG----IEKWGRVPALGCEATFISDLADAVIESLPY 327 (414)
Q Consensus 292 ~a~-----~~G----~~~~~~vp~lNd~p~fi~~La~lV~~~l~~ 327 (414)
... ... ..++.+.+.|+.||.+++.+.+++.+.+..
T Consensus 218 ~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~ 262 (279)
T PRK02395 218 TDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGAD 262 (279)
T ss_pred hhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcC
Confidence 211 111 346899999999999999999999987654
No 11
>PHA02337 putative high light inducible protein
Probab=99.48 E-value=2.4e-14 Score=95.53 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=31.4
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 015024 373 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 405 (414)
Q Consensus 373 ~~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~ 405 (414)
||++||+||||+||+||++++++|++||+++.+
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999999999865
No 12
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.4e-10 Score=112.05 Aligned_cols=232 Identities=17% Similarity=0.206 Sum_probs=163.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
+|.||++....+.. +++.+.+.+++....|..|| -+.+|+++++++.+..+|+++|+++|+| .+...|++++++
T Consensus 8 vgHGsr~p~~~~~~-~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlf----l~~g~H~~~DIP 82 (245)
T COG2138 8 VGHGSRLPRGREVA-EAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLF----LAAGYHTKRDIP 82 (245)
T ss_pred eecCCCCccHHHHH-HHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehh----hccCchhhcccH
Confidence 48899999886544 55555776666555688888 5999999999999999999999999999 577889999999
Q ss_pred HHHHhcc-ccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCc-hHHHHHHHHHH
Q 015024 143 SIFREDE-YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP-YKAEMEECVDL 220 (414)
Q Consensus 143 e~~~~~~-~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDp-Y~~~~~~t~~~ 220 (414)
+.+...+ .+++.. .. +++.||...+.+.+++.+....... +-..+++..||- .|+ -+..+..++++
T Consensus 83 ~~L~~~~~~~~~~~--~~-p~G~~~~~~~~~~~r~~~~~~~~~~-~~~~vv~~~~Gs--------~~~~~~~~~~~va~~ 150 (245)
T COG2138 83 AELGLARQAHPQVD--LS-PLGTHPAVLDLLGQRLEDAGADEAD-DAERVVLEPRGS--------SDPIANAAVYRVARL 150 (245)
T ss_pred HHHHHhhhcCCccc--cc-ccCCchHHHHHHHHHHHHhcccccc-ccceEEEeccCC--------CcccchhHHHHHHHH
Confidence 8885433 234332 22 9999999999999999887754321 111377777776 122 44555666666
Q ss_pred HHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCee
Q 015024 221 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEK 300 (414)
Q Consensus 221 l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~ 300 (414)
+.+..... .-...+|+. . .+|.+.+....+. .++++|+| .|+.|-+.|.+.+.... .....+...
T Consensus 151 l~~~~~~~---~~~~~~~~~-~-----~~~~l~~~~~~~~---~~~~vv~P-~fL~~G~l~~~~~~~~~--~~~~~~~~~ 215 (245)
T COG2138 151 LGEGTASW---KAVITLFTG-V-----AEPGLAGETARLR---YRRVVVLP-YFLFDGLLTDRIRPEVE--LRLAVPEGE 215 (245)
T ss_pred HHhccCCc---eeeeeeecc-c-----cCcchhhhhhhcc---cCcEEEEE-hhHhCchhhhhhHHhhh--hhhccCCcc
Confidence 66654210 012344433 2 2577877777766 57888888 56666666666655444 333445556
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 015024 301 WGRVPALGCEATFISDLADAVIESLPY 327 (414)
Q Consensus 301 ~~~vp~lNd~p~fi~~La~lV~~~l~~ 327 (414)
..+.+.+|.+|...+++.+++.+...+
T Consensus 216 i~~~~~lG~~p~l~~~~~~r~~~~~~~ 242 (245)
T COG2138 216 IALARPLGTHPRLADAVLDRVREARAG 242 (245)
T ss_pred eEecCcCCCCHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999886543
No 13
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.25 E-value=7e-11 Score=97.85 Aligned_cols=87 Identities=31% Similarity=0.504 Sum_probs=77.7
Q ss_pred EEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEE
Q 015024 191 IFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 270 (414)
Q Consensus 191 LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 270 (414)
|||++||.|. .++|...+++.++.|+++++. .++.++|+|+ ++|++++++++|.++|+++|+|+
T Consensus 2 lllv~HGs~~------~s~~~~~~~~~~~~l~~~~~~----~~v~~a~~~~------~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 2 LLVVGHGSPY------KDPYKKDIEAQAHNLAESLPD----FPYYVGFQSG------LGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred EEEEECCCCC------CccHHHHHHHHHHHHHHHCCC----CCEEEEEECC------CCCCHHHHHHHHHHcCCCeEEEE
Confidence 7999999962 258999999999999998742 2489999995 58999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHH
Q 015024 271 PISFVSEHIETLEEIDVEYKELAL 294 (414)
Q Consensus 271 P~gFvsD~lETl~Eid~e~~e~a~ 294 (414)
|+.|+ ++.+|.+||..+.++.++
T Consensus 66 Pl~~~-~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 66 PLAPV-SGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred eCccc-cChhhHHHHHHHHHHHHH
Confidence 99999 999999999999998876
No 14
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.10 E-value=1.1e-09 Score=95.55 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=87.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
+|.||+..+.++. .+.+.+.+.++ .+.+|+.|| -+++|++++++++|.++|+++|+|+|+| .+..+|+.+|++
T Consensus 6 vgHGSR~~~~~~~-~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlF----L~~G~Hv~~DiP 79 (125)
T cd03415 6 ITHGSRRNTFNED-MEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAF----LGRGNHVARDIM 79 (125)
T ss_pred EecCCCChHHHHH-HHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhh----ccCCcchHHHHH
Confidence 4889998876654 35555566532 346688887 5999999999999999999999999999 466789999999
Q ss_pred HHHHhc-------ccc--CCcceEEeCCCCCChHHHHHHHHHHHH
Q 015024 143 SIFRED-------EYL--VNMQHTVIPSWYQREGYITAMANLIEK 178 (414)
Q Consensus 143 e~~~~~-------~~~--~~~~~~~i~~~~~~p~yI~a~a~~I~~ 178 (414)
+.+++. ..+ +++++++.++.+.||.+.+++++++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 888652 112 456789999999999999999999976
No 15
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.08 E-value=2.8e-09 Score=96.17 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=90.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
+|.||+.....+ ..+.+.+.+.++.....|..|| .+++|+++++++++.+.|+++|+++|+| .++..++.++++
T Consensus 19 vgHGSrd~~a~~-~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~F----L~~G~H~~~DIp 93 (154)
T PLN02757 19 VDHGSRRKESNL-MLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFF----LSPGRHWQEDIP 93 (154)
T ss_pred EeCCCCCHHHHH-HHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhh----hcCCcchHhHHH
Confidence 488898876543 3355555554433233566776 5999999999999999999999999999 456677778898
Q ss_pred HHHHhc-cccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhC
Q 015024 143 SIFRED-EYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF 183 (414)
Q Consensus 143 e~~~~~-~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~ 183 (414)
+.+++. ..+|++++.+.++++.||.+++++.+++++++...
T Consensus 94 ~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 94 ALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 877543 34578889999999999999999999999998653
No 16
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.07 E-value=8e-10 Score=95.91 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=87.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
+|.||+.... .+..+.+.+.+.+++....|+.|| .|+.|++++++++|.++|+++|+++|+| .+...++.++++
T Consensus 7 v~hGS~~~~~-~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlf----l~~G~h~~~dip 81 (126)
T PRK00923 7 VGHGSRLPYN-KEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVF----LAHGVHTKRDIP 81 (126)
T ss_pred EeCCCCChHH-HHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchh----hccCcccccccc
Confidence 3788886544 456677777777655566789894 7999999999999999999999999999 455667777777
Q ss_pred HHHHh-------c-cccCCcceEEeCCCCCChHHHHHHHHHHHHH
Q 015024 143 SIFRE-------D-EYLVNMQHTVIPSWYQREGYITAMANLIEKE 179 (414)
Q Consensus 143 e~~~~-------~-~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~ 179 (414)
+.+.. . ...+++++.+.++.+.||.+++.+.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 82 RILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 65531 1 1246677889999999999999999999863
No 17
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.03 E-value=1e-08 Score=92.49 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCc
Q 015024 186 PEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVK 265 (414)
Q Consensus 186 ~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k 265 (414)
+++..||+.+||.+.. .....+++.++.++++.+.. .+.+||-.. .+|++.++|+++.++|++
T Consensus 11 ~~~~~lllvgHGSrd~-------~a~~~~~~la~~l~~~~~~~----~V~~aFle~------~~Psl~eal~~l~~~g~~ 73 (154)
T PLN02757 11 GDKDGVVIVDHGSRRK-------ESNLMLEEFVAMYKQKTGHP----IVEPAHMEL------AEPSIKDAFGRCVEQGAS 73 (154)
T ss_pred CCCcEEEEEeCCCCCH-------HHHHHHHHHHHHHHhhCCCC----cEEEEEEec------CCCCHHHHHHHHHHCCCC
Confidence 3455799999999422 26788899999998876532 368999773 379999999999999999
Q ss_pred eEEEEccccc-ccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 015024 266 SLLAVPISFV-SEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 328 (414)
Q Consensus 266 ~VvVvP~gFv-sD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~~ 328 (414)
+|+|+|+.++ .-|+ ..||..+.++...+.+..++.+.+++++||.+++.|.+++.+.+...
T Consensus 74 ~vvVvP~FL~~G~H~--~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 74 RVIVSPFFLSPGRHW--QEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred EEEEEEhhhcCCcch--HhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 9999998744 4444 56888888888888877789999999999999999999999988654
No 18
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=98.99 E-value=3.4e-09 Score=87.67 Aligned_cols=73 Identities=30% Similarity=0.365 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHHHHHhhccCCCceEEEeeecC-CCCHHHHHHHHHHcCCCEEEEEecCCcccccchH-HHHHHHHHHH
Q 015024 68 SPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYW-HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSG-SSLRLLESIF 145 (414)
Q Consensus 68 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~-~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttg-s~~~~~~e~~ 145 (414)
||.+..+++++++|+++++ +..|++||+++ .|++++++++|+++|+++|+++|+||+ +..++. ...+++.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 4677888999998888774 46799999999 999999999999999999999999998 554444 5555555444
No 19
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.96 E-value=1e-08 Score=87.48 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=84.8
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeee-cCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR-YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr-y~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
+|.||+....+ +..+.+.+.+.++.....|+.||- .+.|++.++++++.++|+++|+++|+|- +. |...+++.
T Consensus 6 v~HGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL----~~-G~h~~~i~ 79 (117)
T cd03414 6 VGRGSSDPDAN-ADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLL----FT-GVLMDRIE 79 (117)
T ss_pred EcCCCCCHHHH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechh----cC-CchHHHHH
Confidence 47888865554 456677777766554568999986 5799999999999999999999999983 33 33345677
Q ss_pred HHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHHH
Q 015024 143 SIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKE 179 (414)
Q Consensus 143 e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~ 179 (414)
+.+++.+..+...+.+.++.+.||.+++++.++++++
T Consensus 80 ~~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 80 EQVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 6664432226678899999999999999999999875
No 20
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.95 E-value=4.4e-10 Score=105.18 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=36.7
Q ss_pred ccCCcchhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcccc
Q 015024 370 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILP 411 (414)
Q Consensus 370 ~~g~~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~~~~ 411 (414)
.|++.. ||++|||+|||||++++++|++||+|+++|+|-.+
T Consensus 156 rf~l~~-aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 156 RFHLPE-AELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred hccCch-hHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 456664 99999999999999999999999999999998644
No 21
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=98.95 E-value=5e-08 Score=95.20 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=129.6
Q ss_pred HHHHHHhhccCCCceEEEeee-----------cC--CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHH
Q 015024 79 EELRKSLWEKNLPAKVYVGMR-----------YW--HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIF 145 (414)
Q Consensus 79 ~~L~~~L~~~~~~~~V~~amr-----------y~--~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~ 145 (414)
.++++.+.+.-++++|++||. .+ -|+..++|++|.++|+++|+|.||+ ...|.=++++.+..
T Consensus 21 ~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQplh-----iipG~Ey~~l~~~v 95 (262)
T PF06180_consen 21 DAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPLH-----IIPGEEYEKLRATV 95 (262)
T ss_dssp HHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE-------SCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeecc-----eeCcHhHHHHHHHH
Confidence 345555555556789999972 12 4999999999999999999999997 56666666666655
Q ss_pred HhccccCCcceEEeCCCCC------ChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHH
Q 015024 146 REDEYLVNMQHTVIPSWYQ------REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVD 219 (414)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~------~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~ 219 (414)
+.... .--++++.++.-. ++.=++++++.+.+.+... ..+..+||..||.|... +.+. .
T Consensus 96 ~~~~~-~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~--~~~~a~vlmGHGt~h~a-----n~~Y-------~ 160 (262)
T PF06180_consen 96 EAYKH-DFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKK--RKDEAVVLMGHGTPHPA-----NAAY-------S 160 (262)
T ss_dssp HHHCC-CSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT---TTEEEEEEE---SCHH-----HHHH-------H
T ss_pred HHhhc-cCCeEEecccccccccccCChHHHHHHHHHHHHhcccc--CCCCEEEEEeCCCCCCc-----cHHH-------H
Confidence 44321 1125678888766 4666666676665544322 24457999999997542 2222 2
Q ss_pred HHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccccccc-chhhHHHH----HHHHHHHHH
Q 015024 220 LIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSE-HIETLEEI----DVEYKELAL 294 (414)
Q Consensus 220 ~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD-~lETl~Ei----d~e~~e~a~ 294 (414)
.+...|...+. .++.++--- | .|+.+++|++|.+.|+|+|.++|.-+|+. |- ..|+ +.--+...+
T Consensus 161 ~l~~~l~~~~~-~~v~vgtvE--G-----~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa--~nDmaGde~dSWks~L~ 230 (262)
T PF06180_consen 161 ALQAMLKKHGY-PNVFVGTVE--G-----YPSLEDVIARLKKKGIKKVHLIPLMLVAGDHA--KNDMAGDEEDSWKSRLE 230 (262)
T ss_dssp HHHHHHHCCT--TTEEEEETT--S-----SSBHHHHHHHHHHHT-SEEEEEEESSS--HHH--HCCCCSSSTTSHHHHHH
T ss_pred HHHHHHHhCCC-CeEEEEEeC--C-----CCCHHHHHHHHHhcCCCeEEEEecccccchhh--hhhhcCCCcchHHHHHH
Confidence 23333322211 135555322 3 49999999999999999999999997764 44 2333 123477778
Q ss_pred hcCCeeEEEcCCCCCCHHHHHHHHHHHHHhC
Q 015024 295 KSGIEKWGRVPALGCEATFISDLADAVIESL 325 (414)
Q Consensus 295 ~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l 325 (414)
+.|.+--....-|+..|.+.+...+-+++++
T Consensus 231 ~~G~~v~~~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 231 AAGFEVTCVLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp HTT-EEEE----GGGSHHHHHHHHHHHHHHH
T ss_pred HCCCEEEEEeccCcCCHHHHHHHHHHHHHHh
Confidence 8998766677889999999998888887653
No 22
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.84 E-value=6.8e-08 Score=97.19 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=91.3
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHH
Q 015024 63 SIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 141 (414)
Q Consensus 63 ~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~ 141 (414)
.+|.||+.....+.. +.|.+.+.++. +.+|+.|| -+++|++++++++|.++|+++|+|+|+| .++.+|+.+|+
T Consensus 11 LvgHGSRdp~~~~~~-~~La~~l~~~~-~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlF----L~~G~Hv~~DI 84 (335)
T PRK05782 11 LIGHGSRRETFNSDM-EGMANYLKEKL-GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAF----LGRGNHVFRDI 84 (335)
T ss_pred EEecCCCChHHHHHH-HHHHHHHHhcc-CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccc----ccCCcchhhhH
Confidence 358999988776543 55556665432 35688887 5999999999999999999999999998 46778999999
Q ss_pred HHHHHhc-------ccc--CCcceEEeCCCCCChHHHHHHHHHHHHHHHhC
Q 015024 142 ESIFRED-------EYL--VNMQHTVIPSWYQREGYITAMANLIEKELQNF 183 (414)
Q Consensus 142 ~e~~~~~-------~~~--~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~ 183 (414)
++.+... ..+ +++++++.++.+.||.+++++.+++++++...
T Consensus 85 P~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 85 MGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 9887631 122 34667899999999999999999999998654
No 23
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.81 E-value=2.7e-09 Score=95.54 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=33.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHh-Ccchhhhhcc
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTT-GEGFLHQWGI 409 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~-g~~~~~~~~~ 409 (414)
++..|+||||+||+||++++++|++| |+|+++|+++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 34589999999999999999999999 9999999975
No 24
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.80 E-value=2e-07 Score=79.49 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=87.2
Q ss_pred EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 190 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
.+|+.+||.+.. .....+.+.++.++++++. .++..||-+. -+|+..++++++.++|+++|+|
T Consensus 2 a~llv~HGS~~~-------~~~~~~~~l~~~l~~~~~~----~~v~~afle~------~~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSDP-------DANADVAKIARLLEEGTGF----ARVETAFAAA------TRPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCCH-------HHHHHHHHHHHHHHHhcCC----CeEEEEEecC------CCCCHHHHHHHHHHcCCCEEEE
Confidence 588999998421 2556777788888777642 1478999873 2699999999999999999999
Q ss_pred EcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHh
Q 015024 270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 324 (414)
Q Consensus 270 vP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~ 324 (414)
+|..++.. ..+ .+|..+..+...+ +...+.+.++|+.||.+++++.+++.+.
T Consensus 65 vP~fL~~G-~h~-~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 65 LPYLLFTG-VLM-DRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred EechhcCC-chH-HHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 99764443 333 4676666655444 4557999999999999999999999875
No 25
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.70 E-value=2.5e-07 Score=80.22 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=83.2
Q ss_pred EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 190 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
.+|+.+||.+.. ..+..+.+.++.+.++.+. .++.+||-+- -+|++++++++|.++|+++|+|
T Consensus 3 ~lvlv~hGS~~~-------~~~~~~~~~~~~l~~~~~~----~~v~~afle~------~~P~l~~~l~~l~~~g~~~v~v 65 (126)
T PRK00923 3 GLLLVGHGSRLP-------YNKEVVTKIAEKIKEKHPF----YIVEVGFMEF------NEPTIPEALKKLIGTGADKIIV 65 (126)
T ss_pred EEEEEeCCCCCh-------HHHHHHHHHHHHHHHhCCC----CeEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEE
Confidence 689999999421 1456677777777776432 1378899762 2599999999999999999999
Q ss_pred Eccc-ccccchhhHHHHHHHHH-------HHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Q 015024 270 VPIS-FVSEHIETLEEIDVEYK-------ELALKSGIEKWGRVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 270 vP~g-FvsD~lETl~Eid~e~~-------e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~ 323 (414)
+|.. |...|. ..||..+.. ++..+.....+.+.++|++||.+++.+.+++.+
T Consensus 66 vPlfl~~G~h~--~~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 66 VPVFLAHGVHT--KRDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred EchhhccCccc--ccccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 9976 334444 345544333 233333444688999999999999999999876
No 26
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.70 E-value=4.4e-08 Score=81.94 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=75.0
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHH
Q 015024 67 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIF 145 (414)
Q Consensus 67 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~ 145 (414)
||+-...+. ..+.+.+.|.++.. ..|..|| .+++|++++++++|.+.|+++|+|+|+|- +...++.+++++.+
T Consensus 2 GSr~~~~~~-~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL----~~G~h~~~DIp~~l 75 (105)
T PF01903_consen 2 GSRDPEANA-ELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFL----FPGYHVKRDIPEAL 75 (105)
T ss_dssp STSSCHHHH-HHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESS----SSSHHHHCHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeee----cCccchHhHHHHHH
Confidence 454433333 33455555555444 7899999 59999999999999999999999999994 56667777898888
Q ss_pred Hhc-cccCCcceEEeCCCCCChHHHHHHHH
Q 015024 146 RED-EYLVNMQHTVIPSWYQREGYITAMAN 174 (414)
Q Consensus 146 ~~~-~~~~~~~~~~i~~~~~~p~yI~a~a~ 174 (414)
+.. ..++++++++-++.+.||...+++++
T Consensus 76 ~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 76 AEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp CHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 543 34567889999999999999998874
No 27
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.64 E-value=7.5e-07 Score=77.72 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=85.5
Q ss_pred eEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEE
Q 015024 189 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 268 (414)
Q Consensus 189 ~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 268 (414)
+.+|+.+||.... -..+.+++.++.+.++.+. ++..||..- .+|++.+.++++.++|+++|+
T Consensus 1 ~~lllvgHGSR~~-------~~~~~~~~la~~l~~~~~~-----~v~~afle~------~~P~l~~~l~~l~~~G~~~iv 62 (125)
T cd03415 1 TAIIIITHGSRRN-------TFNEDMEEWAAYLERKLGV-----PVYLTYNEY------AEPNWRDLLNELLSEGYGHII 62 (125)
T ss_pred CEEEEEecCCCCh-------HHHHHHHHHHHHHHhccCC-----ceEEEEeec------CCCCHHHHHHHHHHCCCCEEE
Confidence 3689999999421 2667777778777765432 378888763 369999999999999999999
Q ss_pred EEccc-ccccchhhHHHHHHHHHHHH------Hhc--CCeeEEEcCCCCCCHHHHHHHHHHHHH
Q 015024 269 AVPIS-FVSEHIETLEEIDVEYKELA------LKS--GIEKWGRVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 269 VvP~g-FvsD~lETl~Eid~e~~e~a------~~~--G~~~~~~vp~lNd~p~fi~~La~lV~~ 323 (414)
|+|+. |..-|. -.||-.+..+.. .+. ...++...|.|++||.+++++++++.+
T Consensus 63 VvPlFL~~G~Hv--~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 63 IALAFLGRGNHV--ARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred EehhhccCCcch--HHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99755 334444 678877776631 122 123599999999999999999999876
No 28
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.60 E-value=7.6e-07 Score=77.78 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=83.9
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccCCCceEEEeee------------cCCCCHHHHHHHHHHcCCCEEEEEecCCccccc
Q 015024 65 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR------------YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSIS 132 (414)
Q Consensus 65 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr------------y~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~ 132 (414)
|-||... ..++--+++++.+.+..++..|++||. ...|++.+++++|.++|+++|+|+|++ .
T Consensus 7 ~fGS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~-----l 80 (127)
T cd03412 7 SFGTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLH-----I 80 (127)
T ss_pred eCCCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCe-----e
Confidence 5566665 333345666777766667889999986 458999999999999999999999998 3
Q ss_pred chHHHHHHHHHHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHH
Q 015024 133 TSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEK 178 (414)
Q Consensus 133 Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~ 178 (414)
..|.-.+++.+.+++.+ .+..++++.++...++.-++.+++.|.+
T Consensus 81 ~~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 81 IPGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred ECcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 44666788888887655 5667899999999999998888887754
No 29
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.35 E-value=2.8e-06 Score=70.66 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=67.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 142 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-ry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~ 142 (414)
++.||+..... +..+.+.+.+.++.+...|..|+ ....|++++++++|.++|+++|+++|+| .+...++.++++
T Consensus 5 v~hGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlf----l~~G~h~~~dip 79 (101)
T cd03416 5 VGHGSRDPRAA-EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLF----LLAGGHVKEDIP 79 (101)
T ss_pred EEcCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeE----eCCCccccccHH
Confidence 36677775443 34455666665544456788886 5779999999999999999999999999 344455667888
Q ss_pred HHHHhc-cccCCcceEEeCCC
Q 015024 143 SIFRED-EYLVNMQHTVIPSW 162 (414)
Q Consensus 143 e~~~~~-~~~~~~~~~~i~~~ 162 (414)
+.++.. ..++++++++.++.
T Consensus 80 ~~~~~~~~~~~~~~i~~~~pl 100 (101)
T cd03416 80 AALAAARARHPGVRIRYAPPL 100 (101)
T ss_pred HHHHHHHHHCCCeEEEecCCC
Confidence 777543 23566777776654
No 30
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.28 E-value=2.3e-06 Score=71.45 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHH
Q 015024 210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEY 289 (414)
Q Consensus 210 Y~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~ 289 (414)
.+..+++.++.++++++ . ++..||-.. .+|++.+.++++.++|.++|+|+|+.. ++..-|-.||....
T Consensus 8 ~~~~~~~la~~l~~~~~-~----~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP~fL-~~G~h~~~DIp~~l 75 (105)
T PF01903_consen 8 ANAELEDLADRLRERLP-V----PVEVAFLEF------AEPSLEEALERLVAQGARRIVVVPYFL-FPGYHVKRDIPEAL 75 (105)
T ss_dssp HHHHHHHHHHHHHHHTS-S----EEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEEESS-SSSHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-C----eEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEeeee-cCccchHhHHHHHH
Confidence 67788888999999876 2 388999653 269999999999999999999998653 44455567788888
Q ss_pred HHHHHhcCCeeEEEcCCCCCCHHHHHHHHH
Q 015024 290 KELALKSGIEKWGRVPALGCEATFISDLAD 319 (414)
Q Consensus 290 ~e~a~~~G~~~~~~vp~lNd~p~fi~~La~ 319 (414)
.+...+.+..++.+.++|++||..+++|+|
T Consensus 76 ~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 76 AEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp CHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 888878887789999999999999998875
No 31
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.25 E-value=1.9e-05 Score=79.67 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=90.3
Q ss_pred ceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceE
Q 015024 188 QVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSL 267 (414)
Q Consensus 188 ~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 267 (414)
...+|+.+||... .-.+..+++.++.+.++.+. ++..||..- .+|++.+.++++.++|+++|
T Consensus 6 ~~aiLLvgHGSRd-------p~~~~~~~~La~~l~~~~~~-----~V~~aFLE~------~ePsl~eal~~l~~~G~~~I 67 (335)
T PRK05782 6 NTAIILIGHGSRR-------ETFNSDMEGMANYLKEKLGV-----PIYLTYNEF------AEPNWRSLLNEIIKEGYRRV 67 (335)
T ss_pred CceEEEEecCCCC-------hHHHHHHHHHHHHHHhccCC-----ceEEEEecc------CCCCHHHHHHHHHHCCCCEE
Confidence 3469999999931 22677888888888876532 378888653 36999999999999999999
Q ss_pred EEEccc-ccccchhhHHHHHHHHHHH-H-----Hhc-C-CeeEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 015024 268 LAVPIS-FVSEHIETLEEIDVEYKEL-A-----LKS-G-IEKWGRVPALGCEATFISDLADAVIESLP 326 (414)
Q Consensus 268 vVvP~g-FvsD~lETl~Eid~e~~e~-a-----~~~-G-~~~~~~vp~lNd~p~fi~~La~lV~~~l~ 326 (414)
+|+|+. |..-|+ ..||..+..+. + .++ | ..++++.|.|+.||.+++.|.+++.+.+.
T Consensus 68 vVvPlFL~~G~Hv--~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~ 133 (335)
T PRK05782 68 IIALAFLGRGNHV--FRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALD 133 (335)
T ss_pred EEecccccCCcch--hhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhh
Confidence 999977 555455 57777666642 1 222 2 13579999999999999999999999875
No 32
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.25 E-value=3e-05 Score=67.68 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=89.3
Q ss_pred EEEEeecCChhhhhcccCCc-hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcC-----CCCCCCCcHHHHHHHHhhcC
Q 015024 190 MIFFSAHGVPLAYVEEAGDP-YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-----PVEWLKPYTDETIIKLGQKG 263 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDp-Y~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G-----~~~WL~P~t~d~L~~L~~~G 263 (414)
.+|+.+||. .|| -+..+.+.++.++++.+. .++..||-|+.- ....-.|+..++|++|.++|
T Consensus 2 aillv~fGS--------~~~~~~~~~~~i~~~l~~~~p~----~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGT--------SYPTAEKTIDAIEDKVRAAFPD----YEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCC--------CCHHHHHHHHHHHHHHHHHCCC----CeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 588999998 134 334566677777776542 248899998541 01134699999999999999
Q ss_pred CceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHh
Q 015024 264 VKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 324 (414)
Q Consensus 264 ~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~ 324 (414)
+++|+|.|.-.+.. .| ..+|..+..+.. .+..++.+.+.|..+++-++.+++.+.+.
T Consensus 70 ~~~V~V~Pl~l~~G-~e-~~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 70 YTEVIVQSLHIIPG-EE-YEKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CCEEEEEeCeeECc-HH-HHHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 99999999887776 45 578877777654 56667999999999999888888877653
No 33
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.18 E-value=2.9e-05 Score=64.51 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=74.3
Q ss_pred EEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEE
Q 015024 191 IFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 270 (414)
Q Consensus 191 LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 270 (414)
+|+.+||.+. +.....+.+.++.++++.+. .++..||-+. .+|+++++++++.++|+++|+|+
T Consensus 2 ivlv~hGS~~-------~~~~~~~~~l~~~l~~~~~~----~~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRD-------PRAAEALEALAERLRERLPG----DEVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCC-------HHHHHHHHHHHHHHHhhCCC----CcEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 7889999942 23556777778888877642 2478898762 26999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCC
Q 015024 271 PISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 308 (414)
Q Consensus 271 P~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lN 308 (414)
|.. +.+-..+..||..+.++...+....++.+.|+++
T Consensus 65 Plf-l~~G~h~~~dip~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 65 PLF-LLAGGHVKEDIPAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred eeE-eCCCccccccHHHHHHHHHHHCCCeEEEecCCCC
Confidence 865 3344444578888888776666666788888774
No 34
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=98.10 E-value=0.00051 Score=64.68 Aligned_cols=195 Identities=16% Similarity=0.300 Sum_probs=125.0
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhcc-ccCCcceEEeCC-CCCChHHHHHHHHHHH
Q 015024 100 YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE-YLVNMQHTVIPS-WYQREGYITAMANLIE 177 (414)
Q Consensus 100 y~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~-~~~~~~~~~i~~-~~~~p~yI~a~a~~I~ 177 (414)
+..| ..||.+|+++|++++++-|++ .--|--.+.+-+...+.. .+. ++...++ .|.+..|-.+ .+.|+
T Consensus 59 ~dTP--~~aL~klk~~gy~eviiQ~lh-----iIpG~EyEklvr~V~~~~~dF~--~lkig~PlLy~k~DYe~~-v~aik 128 (265)
T COG4822 59 FDTP--IQALNKLKDQGYEEVIIQPLH-----IIPGIEYEKLVREVNKYSNDFK--RLKIGRPLLYYKNDYEIC-VEAIK 128 (265)
T ss_pred cCCH--HHHHHHHHHccchheeeeeee-----ecCchHHHHHHHHHHHHhhhhh--eeecCCceeechhhHHHH-HHHHH
Confidence 3455 378999999999999999997 333433333332222211 111 2333443 3344555443 34455
Q ss_pred HHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHH
Q 015024 178 KELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETII 257 (414)
Q Consensus 178 ~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~ 257 (414)
+...... .+-.+||..||.-.. ...|...-+.+...-+.. ++.++--- | -|.++++|+
T Consensus 129 ~~~ppl~--k~e~~vlmgHGt~h~---------s~~~YacLd~~~~~~~f~----~v~v~~ve--~-----yP~~d~vi~ 186 (265)
T COG4822 129 DQIPPLN--KDEILVLMGHGTDHH---------SNAAYACLDHVLDEYGFD----NVFVAAVE--G-----YPLVDTVIE 186 (265)
T ss_pred HhcCCcC--cCeEEEEEecCCCcc---------HHHHHHHHHHHHHhcCCC----ceEEEEec--C-----CCcHHHHHH
Confidence 5543222 223699999998322 122333344444443321 34444322 1 399999999
Q ss_pred HHhhcCCceEEEEcccccccchhhHHHHH----HHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 015024 258 KLGQKGVKSLLAVPISFVSEHIETLEEID----VEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPY 327 (414)
Q Consensus 258 ~L~~~G~k~VvVvP~gFvsD~lETl~Eid----~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~ 327 (414)
.|.+.|++.|-++|.-+|+..-- .-|+. ...++.+.++|.+.-.+.--|+..|.|-....+-+..++..
T Consensus 187 ~l~~~~~~~v~L~PlMlvAG~Ha-~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 187 YLRKNGIKEVHLIPLMLVAGDHA-KNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred HHHHcCCceEEEeeeEEeechhh-hhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999986654 44555 77899999999988888999999999988887777766544
No 35
>PRK02395 hypothetical protein; Provisional
Probab=98.04 E-value=4.6e-05 Score=75.14 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=81.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 015024 65 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 144 (414)
Q Consensus 65 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~ 144 (414)
|.||+....+.+...++.+.+.++...-.|+.||--..|+++++++++. .++|+++|+| .++..+..+++++.
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~f----L~~G~H~~~DIp~~ 214 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLF----IADGFHTQEDIPED 214 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeee----cccCcchHhHHHHH
Confidence 8889865444444444555554432223688888668999999998874 5899999999 45666777788776
Q ss_pred HHhcc------ccC----CcceEEeCCCCCChHHHHHHHHHHHHHHHhCC
Q 015024 145 FREDE------YLV----NMQHTVIPSWYQREGYITAMANLIEKELQNFD 184 (414)
Q Consensus 145 ~~~~~------~~~----~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~ 184 (414)
+...+ .++ +.++.+.++.+.||.+.+.+++++++++...+
T Consensus 215 ~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 215 MGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 54321 233 55788999999999999999999999886543
No 36
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.98 E-value=1.6e-05 Score=67.09 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=56.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHH
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 141 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~ 141 (414)
+|.||+... + +.-+.|++.+.+++. ..|+.|+.=+.|+++++++++.+.|+++|+++|++ .....|+.+|+
T Consensus 6 vgHGSr~~~-~-~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~----L~~G~H~~~Di 76 (103)
T cd03413 6 MGHGTDHPS-N-AVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLM----LVAGDHAHNDM 76 (103)
T ss_pred EECCCCchh-h-hHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehh----heecccchhcC
Confidence 588999976 3 566778888866543 56888886699999999999999999999999998 34555665554
No 37
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.76 E-value=0.00028 Score=71.16 Aligned_cols=104 Identities=23% Similarity=0.354 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHhhccCCCceEEEeeec-------CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHH--HHHHH
Q 015024 71 RRITDAQAEELRKSLWEKNLPAKVYVGMRY-------WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGS--SLRLL 141 (414)
Q Consensus 71 ~~~T~~qa~~L~~~L~~~~~~~~V~~amry-------~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs--~~~~~ 141 (414)
.....+.++.+.+.++-. .-.+..+|.- ..|+++++|+++.++|+++|+++|.. +++.+ ...++
T Consensus 211 ~~~~~~t~~~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~-----Fv~D~lEtl~ei 283 (333)
T PRK00035 211 QQQCEETARLLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG-----FVSDHLETLEEI 283 (333)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe-----eeccchhHHHHH
Confidence 334555677777777521 1235566652 68999999999999999999999984 44444 23333
Q ss_pred HHHHHhc-cccCCcceEEeCCCCCChHHHHHHHHHHHHHHH
Q 015024 142 ESIFRED-EYLVNMQHTVIPSWYQREGYITAMANLIEKELQ 181 (414)
Q Consensus 142 ~e~~~~~-~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~ 181 (414)
....++. .....-.+.+++...+||.++++++++|++.+.
T Consensus 284 ~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l~~~v~~~~~ 324 (333)
T PRK00035 284 DIEYREIAEEAGGEEFRRIPCLNDSPEFIEALADLVRENLQ 324 (333)
T ss_pred HHHHHHHHHHcCCceEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 3222211 111112678999999999999999999998764
No 38
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.76 E-value=0.00025 Score=71.37 Aligned_cols=103 Identities=22% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCchHHHHHHHHHHHHHhhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHH
Q 015024 66 GGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 138 (414)
Q Consensus 66 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--ry~-----~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~ 138 (414)
.|+|=.....+.+++|.+.|+. ..+ +..++ +.+ .|+++++++++.++|+++|+++|. .+++-+.-
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~-~~~--~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~-----gFv~D~lE 276 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGF-PNE--YRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI-----GFTADHLE 276 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCC-CCC--eEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC-----cccccchh
Confidence 5788888888889999888862 123 44455 455 999999999999999999999998 33333321
Q ss_pred --HHHH----HHHHhccccCCcc-eEEeCCCCCChHHHHHHHHHHHHHH
Q 015024 139 --RLLE----SIFREDEYLVNMQ-HTVIPSWYQREGYITAMANLIEKEL 180 (414)
Q Consensus 139 --~~~~----e~~~~~~~~~~~~-~~~i~~~~~~p~yI~a~a~~I~~~l 180 (414)
.++. +.+.+. +.+ +..++...+||.||+++++.|++.+
T Consensus 277 Tl~ei~~e~~~~~~~~----G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 277 TLYEIDEEYREVAEDA----GGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred HHHhhhHHHHHHHHHc----CCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 1222 223222 234 8999999999999999999998864
No 39
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.67 E-value=0.00069 Score=67.93 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccc--ccccchhhHHHHH
Q 015024 209 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLEEID 286 (414)
Q Consensus 209 pY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g--FvsD~lETl~Eid 286 (414)
|=..-.++-+++|.++|+.. +-++.+++ |.| .|++++++++|.++|+++++++|.. |.+-...+-.+
T Consensus 70 PL~~~T~~q~~~L~~~L~~~--~~~V~~am--ry~-----~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~-- 138 (320)
T COG0276 70 PLNVITRAQAAALEERLDLP--DFKVYLAM--RYG-----PPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVD-- 138 (320)
T ss_pred ccHHHHHHHHHHHHHHhCCC--CccEEEee--cCC-----CCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHH--
Confidence 43334466677888887622 22345554 443 7999999999999999999999955 33333322222
Q ss_pred HHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 015024 287 VEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 328 (414)
Q Consensus 287 ~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~~ 328 (414)
.-.+.+.+..+...+..|+++-++|.||+++++.|++.++..
T Consensus 139 ~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~ 180 (320)
T COG0276 139 ELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKH 180 (320)
T ss_pred HHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhc
Confidence 112222222244579999999999999999999999988765
No 40
>PLN02449 ferrochelatase
Probab=97.65 E-value=0.00059 Score=72.01 Aligned_cols=112 Identities=16% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHH
Q 015024 66 GGSPLRRITDAQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 138 (414)
Q Consensus 66 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--ry~-----~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~ 138 (414)
.|.|=..++++-++++.+.|+..+....+..++ |.| .|+++++|++|.++|+++++++|.- +.+-+.-
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPig-----FvSDhiE 368 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPIS-----FVSEHIE 368 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc-----ccccchH
Confidence 367888888889999999997543112344455 456 8999999999999999999999993 5554432
Q ss_pred --HHHHHHHHhccccCCc-ceEEeCCCCCChHHHHHHHHHHHHHHHh
Q 015024 139 --RLLESIFREDEYLVNM-QHTVIPSWYQREGYITAMANLIEKELQN 182 (414)
Q Consensus 139 --~~~~e~~~~~~~~~~~-~~~~i~~~~~~p~yI~a~a~~I~~~l~~ 182 (414)
.++.-..++.-...++ .+..++...+||.||+++++.|.+++..
T Consensus 369 TL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 369 TLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 2222111111111123 5889999999999999999999998854
No 41
>PRK12435 ferrochelatase; Provisional
Probab=97.59 E-value=0.00096 Score=66.94 Aligned_cols=110 Identities=15% Similarity=0.276 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHHHHHHhccc--cCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccc--ccccchhhHH
Q 015024 208 DPYKAEMEECVDLIMEELEKR--KITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLE 283 (414)
Q Consensus 208 DpY~~~~~~t~~~l~e~l~~~--~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g--FvsD~lETl~ 283 (414)
.|=...-++.+++|+++|+.. +.+-++.+++ |- | .|+++|+|++|.++|+++|+++|.. |.+=...+..
T Consensus 53 SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~am--ry----~-~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~ 125 (311)
T PRK12435 53 SPLAKITDEQAKALEKALNEVQDEVEFKLYLGL--KH----I-EPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYN 125 (311)
T ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCceEEEEe--cC----C-CCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHH
Confidence 454555566677777777531 1111233443 22 2 6999999999999999999999933 5544444443
Q ss_pred HHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCC
Q 015024 284 EIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPY 327 (414)
Q Consensus 284 Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~ 327 (414)
| ..++...+.+...+..++++.++|.||+++++.|++.+..
T Consensus 126 ~---~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~ 166 (311)
T PRK12435 126 K---RAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQ 166 (311)
T ss_pred H---HHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHH
Confidence 3 2334334444457999999999999999999999987753
No 42
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.41 E-value=4.2e-05 Score=68.90 Aligned_cols=33 Identities=45% Similarity=0.610 Sum_probs=30.1
Q ss_pred ccCCcchhhhhhhHHHHHHHHHHHHHHHHhCcc
Q 015024 370 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEG 402 (414)
Q Consensus 370 ~~g~~~~~E~~ngR~Am~g~~~~~~~e~~~g~~ 402 (414)
.+++...+|++|||+||+||+..++.|+.++.+
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 567788999999999999999999999998864
No 43
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.40 E-value=7.8e-05 Score=67.15 Aligned_cols=28 Identities=39% Similarity=0.324 Sum_probs=24.8
Q ss_pred cccCCcchhhhhhhHHHHHHHHHHHHHH
Q 015024 369 WEWGWTRSAETWNGRAAMLAVLVLLVLE 396 (414)
Q Consensus 369 ~~~g~~~~~E~~ngR~Am~g~~~~~~~e 396 (414)
..+.++..+|++|||+||+||+..++.|
T Consensus 128 ~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 128 EEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp HSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999876
No 44
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.36 E-value=0.0018 Score=65.07 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=73.6
Q ss_pred cCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccc--ccccchhhHH
Q 015024 206 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLE 283 (414)
Q Consensus 206 ~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g--FvsD~lETl~ 283 (414)
.|.|=...-++.+++|+++|+....+-++..++ |.| .|++++++++|.++|+++|+|+|.. |..=...+..
T Consensus 63 ~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~am--ry~-----~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~ 135 (316)
T PF00762_consen 63 GGSPLNEITRRQAEALQQRLDERGVDVEVYYAM--RYG-----PPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYL 135 (316)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEE--SSS-----SSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEe--ccC-----CCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHH
Confidence 456666666777788888876421111244555 333 7999999999999999999999965 4443333333
Q ss_pred HHHHHHHHHHHh-cCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 015024 284 EIDVEYKELALK-SGIEKWGRVPALGCEATFISDLADAVIESLPYV 328 (414)
Q Consensus 284 Eid~e~~e~a~~-~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~~ 328 (414)
+ +..+...+ .....++.++.+-+||.+++++++.|.+++...
T Consensus 136 ~---~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 136 D---EVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERF 178 (316)
T ss_dssp H---HHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS
T ss_pred H---HHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3 23333333 344579999999999999999999999988765
No 45
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.31 E-value=0.0013 Score=55.46 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=60.8
Q ss_pred EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 190 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
.+||.+||.+.. .....++.++.+.++.. .++.++|-- + +|++++.++++.++|+++|++
T Consensus 2 ~illvgHGSr~~--------~~~~~~~l~~~l~~~~~-----~~v~~~~lE--~-----~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHP--------SNAVYAALEYVLREEDP-----ANVFVGTVE--G-----YPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCch--------hhhHHHHHHHHHHhcCC-----CcEEEEEEc--C-----CCCHHHHHHHHHHcCCCEEEE
Confidence 478999999532 33444555555554422 247888865 2 699999999999999999999
Q ss_pred Eccc-ccccchhhHHHHHH----HHHHHHHhcCCe
Q 015024 270 VPIS-FVSEHIETLEEIDV----EYKELALKSGIE 299 (414)
Q Consensus 270 vP~g-FvsD~lETl~Eid~----e~~e~a~~~G~~ 299 (414)
+|.. |..+|.. .||.- --+...++.|.+
T Consensus 62 vPl~L~~G~H~~--~Dipge~~~SW~~~l~~~g~~ 94 (103)
T cd03413 62 MPLMLVAGDHAH--NDMAGDEPDSWKSILEAAGIK 94 (103)
T ss_pred Eehhheecccch--hcCCCCCchhHHHHHHHCCCe
Confidence 9988 6677773 55533 245566666654
No 46
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0014 Score=63.53 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=90.5
Q ss_pred EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 190 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
.+|...||.+.. .+.+...+.+..+.++... .++..+|-= -.+|+.++.++.+..+|+++|+|
T Consensus 4 ~~llvgHGsr~p-------~~~~~~~~~a~~~~~~~~~----~~v~~~f~e------~~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLP-------RGREVAEAIAARLEERGDF----PPVRVAFLE------LAEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCc-------cHHHHHHHHHHHHHhhcCC----ccchhHHHH------hcCCCHHHHHHHHHhcCCCeEEE
Confidence 478899999533 2556666666666666532 236677743 24799999999999999999999
Q ss_pred EcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 015024 270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 328 (414)
Q Consensus 270 vP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~l~~~ 328 (414)
|| .|++.-..|..||..+......+.+...+. .++.|+.+.+.+.+++.+.....
T Consensus 67 VP-lfl~~g~H~~~DIP~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~~ 121 (245)
T COG2138 67 VP-LFLAAGYHTKRDIPAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGADE 121 (245)
T ss_pred ee-hhhccCchhhcccHHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhcccc
Confidence 99 567777788999999999888777765443 79999999999999998876654
No 47
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=97.07 E-value=0.002 Score=63.11 Aligned_cols=108 Identities=18% Similarity=0.306 Sum_probs=72.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHH--
Q 015024 64 IGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL-- 141 (414)
Q Consensus 64 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~-- 141 (414)
+|.|||-...+ --.+|+..|.+.+ .-.|++|.-=+.|++++++++|++.|++++.++|+. ....-|+.+|+
T Consensus 147 mGHGt~h~an~--~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlM----lVAGdHa~nDmaG 219 (262)
T PF06180_consen 147 MGHGTPHPANA--AYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLM----LVAGDHAKNDMAG 219 (262)
T ss_dssp EE---SCHHHH--HHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEES----SS--HHHHCCCCS
T ss_pred EeCCCCCCccH--HHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecc----cccchhhhhhhcC
Confidence 38899887543 3467888888754 124889998899999999999999999999999998 34445666553
Q ss_pred ------HHHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHH
Q 015024 142 ------ESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQ 181 (414)
Q Consensus 142 ------~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~ 181 (414)
...+++... .+ -.+++..++.|++.+.+.++|+++++
T Consensus 220 de~dSWks~L~~~G~--~v-~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAAGF--EV-TCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHTT---EE-EE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHCCC--EE-EEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 334433321 11 23678899999999999999999863
No 48
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=96.95 E-value=0.00064 Score=65.97 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||+|++..++-|++||+|++.++.
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~ 234 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLL 234 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 479999999999999999999999999998874
No 49
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=96.91 E-value=0.00055 Score=66.03 Aligned_cols=34 Identities=35% Similarity=0.331 Sum_probs=31.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 409 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~~ 409 (414)
..|+-|||+||++|+..+.-+.+||+|.+++++-
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 4899999999999999999999999999998864
No 50
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.89 E-value=0.00069 Score=64.14 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=27.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLH 405 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~ 405 (414)
..|+-|||+||+|++..+.-|++||++++.
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 379999999999999999999999999863
No 51
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.58 E-value=0.024 Score=50.05 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=47.2
Q ss_pred CCCCchHHHHHHHHHHHHHhhccCCCceEEEeee--cC-----CCCHHHHHHHHHHcCCCEEEEEec-C
Q 015024 66 GGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR--YW-----HPFTEEAIEQIKRDGITKLVVLPL-Y 126 (414)
Q Consensus 66 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr--y~-----~P~i~e~l~~l~~~G~~~IivlPL-y 126 (414)
.|.|=..++.+.+++++++|... .-.+..||. .+ .|++.++++++.++|+++|+++|. |
T Consensus 35 ~gd~Y~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF 101 (135)
T cd00419 35 KGDPYPDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGF 101 (135)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcc
Confidence 46788888999999999988631 123555664 32 999999999999999999999999 6
No 52
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=96.56 E-value=0.0019 Score=60.82 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGE 401 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~ 401 (414)
..|+-|||+||||+...+.-|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 47999999999999999999999986
No 53
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=96.56 E-value=0.0017 Score=62.84 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=29.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-HHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLE-VTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e-~~~g~~~~~~~~ 408 (414)
..|+-|||+||++|+..++-| .+||++.+.++.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~ 221 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 221 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHH
Confidence 479999999999999999888 578999999874
No 54
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.54 E-value=0.0016 Score=63.64 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=28.6
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchhhh
Q 015024 375 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQ 406 (414)
Q Consensus 375 ~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~ 406 (414)
..+|+.|||+||+|++..++.|++++.+++.+
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 46899999999999999999999998887643
No 55
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=96.54 E-value=0.0016 Score=63.55 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||++++..++.+++||+|.++++.
T Consensus 208 ~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~ 240 (262)
T PLN00025 208 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240 (262)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 589999999999999999999999999998864
No 56
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.46 E-value=0.0013 Score=63.73 Aligned_cols=33 Identities=39% Similarity=0.417 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||++|+..++-+.+||+|.++++.
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~ 234 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLL 234 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHH
Confidence 489999999999999999999999999998874
No 57
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.44 E-value=0.0019 Score=63.11 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||++++..++.+++||+|.+.++.
T Consensus 212 ~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~ 244 (262)
T PLN00048 212 LKEVKNGRLAMLAILGYFIQALVTGVGPFQNLL 244 (262)
T ss_pred HHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHH
Confidence 589999999999999999999999999998863
No 58
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=96.38 E-value=0.0023 Score=61.81 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
.+|+-|||+||++|+..++-+.+||+|.++++.
T Consensus 199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~ 231 (244)
T PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLF 231 (244)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHH
Confidence 489999999999999999999999999998874
No 59
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=96.35 E-value=0.0027 Score=63.45 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=29.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 377 AETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 377 ~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
.|+-|||+||+|++..++.+.+||++.+.++.
T Consensus 276 kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~ 307 (324)
T PLN00171 276 KEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLV 307 (324)
T ss_pred HHHhhhHHHHHHHHHHHHhHhhcCCChHHHHH
Confidence 69999999999999999999999999988863
No 60
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=96.34 E-value=0.0027 Score=62.08 Aligned_cols=33 Identities=39% Similarity=0.424 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||++++..++-+.+||+++++++.
T Consensus 217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~ 249 (267)
T PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM 249 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHH
Confidence 489999999999999999999999999999874
No 61
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=96.29 E-value=0.0031 Score=62.26 Aligned_cols=33 Identities=39% Similarity=0.543 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 015024 376 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 408 (414)
Q Consensus 376 ~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~ 408 (414)
..|+-|||+||++++..++.+.+||+|.++.+.
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~ 269 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 269 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 589999999999999999999999999987763
No 62
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.23 E-value=0.0027 Score=61.52 Aligned_cols=30 Identities=47% Similarity=0.469 Sum_probs=27.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchh
Q 015024 375 RSAETWNGRAAMLAVLVLLVLEVTTGEGFL 404 (414)
Q Consensus 375 ~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~ 404 (414)
..+|+.|||+||+|++..++.|++|+.+++
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 468999999999999999999999998876
No 63
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=95.67 E-value=0.0075 Score=59.07 Aligned_cols=32 Identities=38% Similarity=0.403 Sum_probs=28.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 405 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~ 405 (414)
-..+|+.|||+||+|++..++.|++++.+++.
T Consensus 100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 100 FAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 45799999999999999999999998877643
No 64
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=95.50 E-value=0.005 Score=60.74 Aligned_cols=29 Identities=45% Similarity=0.438 Sum_probs=25.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCc
Q 015024 373 WTRSAETWNGRAAMLAVLVLLVLEVTTGE 401 (414)
Q Consensus 373 ~~~~~E~~ngR~Am~g~~~~~~~e~~~g~ 401 (414)
+...+|+.|||+||+|++..++.|+++|.
T Consensus 132 r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 132 RFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 34579999999999999999999998764
No 65
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=95.25 E-value=0.012 Score=57.25 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=28.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 015024 373 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 405 (414)
Q Consensus 373 ~~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~ 405 (414)
+...+|+.|||+||+|++..++.|+++|...++
T Consensus 94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 345799999999999999999999999876544
No 66
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=95.20 E-value=0.012 Score=56.82 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=27.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCcch
Q 015024 373 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGF 403 (414)
Q Consensus 373 ~~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~ 403 (414)
+...+|+.|||+||+|++..++.|++++.++
T Consensus 81 ~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 81 WFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred HHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 3457999999999999999999999998766
No 67
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=95.15 E-value=0.013 Score=57.19 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcch
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTTGEGF 403 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~ 403 (414)
...+|+.|||+||+|++..++.|++++.++
T Consensus 91 ~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 91 NRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 346899999999999999999999987655
No 68
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=95.02 E-value=0.015 Score=56.50 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcch
Q 015024 375 RSAETWNGRAAMLAVLVLLVLEVTTGEGF 403 (414)
Q Consensus 375 ~~~E~~ngR~Am~g~~~~~~~e~~~g~~~ 403 (414)
..+|+.|||+||+|++..++.|++++.++
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 45899999999999999999999877654
No 69
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=94.91 E-value=0.013 Score=57.04 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=29.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 409 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~~~~~~ 409 (414)
-..+|+-|||+||++|+..++ +..||+|.++.+|+
T Consensus 221 lk~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~~ 255 (255)
T PLN00170 221 LKLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALGL 255 (255)
T ss_pred HHHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhcC
Confidence 346899999999999887765 55899999999885
No 70
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=94.79 E-value=0.28 Score=44.27 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=53.0
Q ss_pred CCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccc--ccccchhhHHH
Q 015024 207 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS--FVSEHIETLEE 284 (414)
Q Consensus 207 GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g--FvsD~lETl~E 284 (414)
|.|=...-++.+++|+++|+....+..+..++ |. | .|+++|+|+++.++|+++|+++|.. |.+-......|
T Consensus 63 ~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~am--ry----~-~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~ 135 (159)
T cd03411 63 GSPLNEITRAQAEALEKALDERGIDVKVYLAM--RY----G-PPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLD 135 (159)
T ss_pred CCccHHHHHHHHHHHHHHHhccCCCcEEEehH--hc----C-CCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHH
Confidence 34444445666777777775321111133332 22 2 7999999999999999999999965 33333332222
Q ss_pred HHHHHHHHHHhcC-CeeEEEcCCCCC
Q 015024 285 IDVEYKELALKSG-IEKWGRVPALGC 309 (414)
Q Consensus 285 id~e~~e~a~~~G-~~~~~~vp~lNd 309 (414)
+..+...+.+ ...+..++.+.+
T Consensus 136 ---~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
T cd03411 136 ---EVERALKKLRPAPELRVIRSFYD 158 (159)
T ss_pred ---HHHHHHHhcCCCCcEEEeCcccc
Confidence 2333333332 235777766554
No 71
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=94.74 E-value=0.26 Score=49.30 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=63.0
Q ss_pred CCCcHHHHHHHHhhcCCceEEEEc--cccc---ccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 015024 248 LKPYTDETIIKLGQKGVKSLLAVP--ISFV---SEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322 (414)
Q Consensus 248 L~P~t~d~L~~L~~~G~k~VvVvP--~gFv---sD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~ 322 (414)
-.|-|+++++++.+.|++|+|++| |-|. +... |-+|...+++.-.+.+++ +..|+--..++.+|+++|+.|.
T Consensus 138 ~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSS--ln~l~r~~r~~~~~~~~~-wsiIdrW~t~~glIkafA~~I~ 214 (395)
T KOG1321|consen 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSS--LNELWRQFREDGYERDIK-WSIIDRWPTREGLIKAFAENIE 214 (395)
T ss_pred cCcccHHHHHHHHhcCceeEEeeccCCceeeecCccc--HHHHHHHHHhcCcccCCc-eEeeccccccchHHHHHHHHHH
Confidence 379999999999999999999997 2232 2222 566666677776677775 8899999999999999999999
Q ss_pred HhCCCC
Q 015024 323 ESLPYV 328 (414)
Q Consensus 323 ~~l~~~ 328 (414)
+.|+.-
T Consensus 215 keL~~F 220 (395)
T KOG1321|consen 215 KELQTF 220 (395)
T ss_pred HHHHhc
Confidence 988753
No 72
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=94.56 E-value=0.021 Score=57.16 Aligned_cols=31 Identities=32% Similarity=0.221 Sum_probs=26.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcchh
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 404 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~g~~~~ 404 (414)
-..+|+.|||+||+|++..++.|++++.+..
T Consensus 148 ~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 148 YFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 3469999999999999999999998866543
No 73
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=93.34 E-value=0.05 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=23.0
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHh
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEVTT 399 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~~~ 399 (414)
...+|+.|||+||+|++..++.|+++
T Consensus 73 ~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 73 LQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 34689999999999999999999863
No 74
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=93.13 E-value=0.82 Score=43.56 Aligned_cols=83 Identities=13% Similarity=0.294 Sum_probs=64.5
Q ss_pred eEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHH--------HHHHhccccCCcceEEeCCCCC
Q 015024 93 KVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE--------SIFREDEYLVNMQHTVIPSWYQ 164 (414)
Q Consensus 93 ~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~--------e~~~~~~~~~~~~~~~i~~~~~ 164 (414)
.|++|--=+-|-+..+++.|+++|++++-++|+.- ...-++.++.. +.+.+.. .+ + -.++...+.
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMl----vAG~Ha~nDMasddedswk~il~~~G-~~-v-~~~l~GLGE 241 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLML----VAGDHAKNDMASDDEDSWKNILEKNG-FK-V-EVYLHGLGE 241 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEE----eechhhhhhhcccchHHHHHHHHhCC-ce-e-EEEeecCCC
Confidence 68888888999999999999999999999999972 34445555443 3333322 11 2 357889999
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 015024 165 REGYITAMANLIEKELQN 182 (414)
Q Consensus 165 ~p~yI~a~a~~I~~~l~~ 182 (414)
+|++.+...++|+.+++.
T Consensus 242 ~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 242 NPAIQAIFIDHIKDAIER 259 (265)
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 999999999999999864
No 75
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=92.85 E-value=0.093 Score=49.83 Aligned_cols=29 Identities=38% Similarity=0.506 Sum_probs=24.7
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCc
Q 015024 373 WTRSAETWNGRAAMLAVLVLLVLEVTTGE 401 (414)
Q Consensus 373 ~~~~~E~~ngR~Am~g~~~~~~~e~~~g~ 401 (414)
+-..+|+-|||+||++++..++.|.++.-
T Consensus 74 ~~r~~ElkhGR~AMlA~~G~~~~~~~~~p 102 (209)
T PLN00089 74 WFRESELKHGRAAMLAVAGFIAPDFVRIP 102 (209)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 33469999999999999999999987643
No 76
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=92.65 E-value=0.067 Score=51.84 Aligned_cols=29 Identities=34% Similarity=0.231 Sum_probs=24.7
Q ss_pred cCCcchhhhhhhHHHHHHHHHHHHHHHHh
Q 015024 371 WGWTRSAETWNGRAAMLAVLVLLVLEVTT 399 (414)
Q Consensus 371 ~g~~~~~E~~ngR~Am~g~~~~~~~e~~~ 399 (414)
+.+-..+|+.|||+||+|++..++.|+++
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence 33445799999999999999999999864
No 77
>PRK10481 hypothetical protein; Provisional
Probab=85.98 E-value=16 Score=35.12 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=81.6
Q ss_pred ceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCCCCCChHHHHH
Q 015024 92 AKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITA 171 (414)
Q Consensus 92 ~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a 171 (414)
-.|.++=++-.|.+.+.+++|.++|++-|+++..- .+..-...+ ..+ ..| .+.| +.++.|
T Consensus 66 ~~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctg----dfp~l~a~r---~~l----~~P---~~~i------~~lv~A 125 (224)
T PRK10481 66 QQVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTG----EFPSLTARN---AIL----LEP---SRIL------PPLVAA 125 (224)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecC----CCCCccccC---ccc----cCc---hhhH------HHHHHH
Confidence 46788888999999999999999999999888652 111100000 000 001 1111 333333
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCC-
Q 015024 172 MANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKP- 250 (414)
Q Consensus 172 ~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P- 250 (414)
++ ...+..++ -||..++.+..+...+. |.. ..++-.| +|..+
T Consensus 126 l~-----------~g~riGVi---------------tP~~~qi~~~~~kw~~~-G~~-----v~~~~as-----py~~~~ 168 (224)
T PRK10481 126 IV-----------GGHQVGVI---------------VPVEEQLAQQAQKWQVL-QKP-----PVFALAS-----PYHGSE 168 (224)
T ss_pred hc-----------CCCeEEEE---------------EeCHHHHHHHHHHHHhc-CCc-----eeEeecC-----CCCCCH
Confidence 22 11333333 37999998888777765 432 2333222 23333
Q ss_pred -cHHHHHHHHhhcCCceEEEEcccccccchhhHHH
Q 015024 251 -YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEE 284 (414)
Q Consensus 251 -~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~E 284 (414)
.+.+..++|...|..-|+.-|.||.+++-+.+++
T Consensus 169 ~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~ 203 (224)
T PRK10481 169 EELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQK 203 (224)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHH
Confidence 4666777777789999999999999866554443
No 78
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=84.88 E-value=14 Score=38.10 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhccCCCceEEEeeec----CCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhcc
Q 015024 74 TDAQAEELRKSLWEKNLPAKVYVGMRY----WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 149 (414)
Q Consensus 74 T~~qa~~L~~~L~~~~~~~~V~~amry----~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~ 149 (414)
+++.+..+-+.--+.|.+ .|+.|+-| ++|++..||.+-.+ +++.+-.-+|-+-.-......+-+.+.+++.
T Consensus 32 d~~~~~~~i~~aie~GiN-yidTA~~Yh~g~sE~~lgkaL~~~~R---ekv~LaTKlp~~~~~~~edm~r~fneqLekl- 106 (391)
T COG1453 32 DEENANETIDYAIEHGIN-YIDTAWPYHGGESEEFLGKALKDGYR---EKVKLATKLPSWPVKDREDMERIFNEQLEKL- 106 (391)
T ss_pred cHHHHHHHHHHHHHcCCc-eEeecccccCCCchHHHHHHhhhccc---ceEEEEeecCCccccCHHHHHHHHHHHHHHh-
Confidence 444444433332235655 36778877 55666666555432 3444433444211111222222233444332
Q ss_pred ccCCcceEEeCCCCCC----hHHHHHHHHHHHHHHHhCCCCCce-EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHH
Q 015024 150 YLVNMQHTVIPSWYQR----EGYITAMANLIEKELQNFDSPEQV-MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEE 224 (414)
Q Consensus 150 ~~~~~~~~~i~~~~~~----p~yI~a~a~~I~~~l~~~~~~~~~-~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~ 224 (414)
.+.+++-|.-| ..|-+...-...+++++.....+. ++=||+||.+.- +.+.
T Consensus 107 -----~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~-------------------~~~i 162 (391)
T COG1453 107 -----GTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEV-------------------FKEI 162 (391)
T ss_pred -----CCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHH-------------------HHHH
Confidence 22344433322 222222222234444443222333 345999997422 2233
Q ss_pred hccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEccc
Q 015024 225 LEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS 273 (414)
Q Consensus 225 l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g 273 (414)
+.- .+|..+ |.+.--..|=.....+.|+..++.| ..|+|+.|.
T Consensus 163 v~a----~~~dfv-qlq~ny~d~~n~~~~~~l~~A~~~~-~gI~IMeP~ 205 (391)
T COG1453 163 VDA----YPWDFV-QLQYNYIDQKNQAGTEGLKYAASKG-LGIFIMEPL 205 (391)
T ss_pred Hhc----CCcceE-EeeeeeeccchhcccHHHHHHHhCC-CcEEEEeeC
Confidence 311 125544 5554444444455556888877777 467777654
No 79
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=82.57 E-value=0.26 Score=46.56 Aligned_cols=24 Identities=46% Similarity=0.505 Sum_probs=21.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHH
Q 015024 374 TRSAETWNGRAAMLAVLVLLVLEV 397 (414)
Q Consensus 374 ~~~~E~~ngR~Am~g~~~~~~~e~ 397 (414)
...+|+-|||+||++++..++.|.
T Consensus 64 ~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 64 LRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHhhcccHHHHhhccceeecc
Confidence 356999999999999999999996
No 80
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=78.57 E-value=7.1 Score=34.26 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
.+.++.-.+.+.+.|+..++.. .|++ .||+|+||-| ..|.-|. +++||+.|=..+.+.++..-|-+.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t-----GtGKn~v------~~liA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT-----GTGKNFV------SRLIAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC-----CCcHHHH------HHHHHHHHHhcccCCCceeeeccc
Confidence 4556677788888888888653 4444 4999999996 6676675 667777764333344455555553
No 81
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=78.30 E-value=50 Score=31.32 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc----------ccchHHHHHHHHHHHHhccccCCcceEEe
Q 015024 90 LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS----------ISTSGSSLRLLESIFREDEYLVNMQHTVI 159 (414)
Q Consensus 90 ~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS----------~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i 159 (414)
.+++|.+|+-=..|+..+..+..++.|.+-++-+||=|+-- ..+-....+.+..++.......++.-+..
T Consensus 19 Lp~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmG 98 (213)
T PF04748_consen 19 LPFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMG 98 (213)
T ss_dssp SSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 35789999987889999999999999999999999999751 12222222333444433333334555667
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 015024 160 PSWYQREGYITAMANLIEK 178 (414)
Q Consensus 160 ~~~~~~p~yI~a~a~~I~~ 178 (414)
..+-.++.-.+.+.+.+++
T Consensus 99 S~~T~~~~~m~~vl~~l~~ 117 (213)
T PF04748_consen 99 SRFTSDREAMRWVLEVLKE 117 (213)
T ss_dssp CCHHC-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 7788888888777766654
No 82
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=76.07 E-value=13 Score=31.59 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHhhcCCceEEEEcc-cccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCC--CHHHHHHHHHHHHH
Q 015024 249 KPYTDETIIKLGQKGVKSLLAVPI-SFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC--EATFISDLADAVIE 323 (414)
Q Consensus 249 ~P~t~d~L~~L~~~G~k~VvVvP~-gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd--~p~fi~~La~lV~~ 323 (414)
+|+ .+-+++++++|+|.|+=.-| +=-.+.- +..+ .++.++++|+. |+++|.-.. +++-++.+.+.+.+
T Consensus 14 Q~~-~~d~~~la~~GfktVInlRpd~E~~~qp-~~~~----~~~~a~~~Gl~-y~~iPv~~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 14 QPS-PEDLAQLAAQGFKTVINLRPDGEEPGQP-SSAE----EAAAAEALGLQ-YVHIPVDGGAITEEDVEAFADALES 84 (110)
T ss_dssp S---HHHHHHHHHCT--EEEE-S-TTSTTT-T--HHC----HHHHHHHCT-E-EEE----TTT--HHHHHHHHHHHHT
T ss_pred CCC-HHHHHHHHHCCCcEEEECCCCCCCCCCC-CHHH----HHHHHHHcCCe-EEEeecCCCCCCHHHHHHHHHHHHh
Confidence 454 45788999999998876643 2111111 1222 56778899995 999997654 44566667766665
No 83
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=71.87 E-value=58 Score=31.13 Aligned_cols=198 Identities=20% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCCCc-hHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHH
Q 015024 66 GGSPL-RRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 144 (414)
Q Consensus 66 ggSPL-~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~ 144 (414)
|.+|. -+.|-++.++|++. ++.|+.|+.+- +++.+.+ .+..-.++.++++.+....
T Consensus 29 ~~dpH~~~~~p~d~~~l~~A------dlvv~~G~~~e-~~l~~~~---~~~~~~~~~~i~~~~~~~~------------- 85 (256)
T PF01297_consen 29 GADPHDYEPTPSDIKKLQKA------DLVVYNGLGLE-PWLEKLL---ESSQNPKVKVIDLSEGIDL------------- 85 (256)
T ss_dssp TSCTTT----HHHHHHHHHS------SEEEES-TTTS-CCHHHHH---HTTTTTTTEEEETTTTS-G-------------
T ss_pred CCccccccCChHHHHHHHhC------CEEEEeCCccc-hhhhhhh---hcccccccceEEeeccccc-------------
Confidence 34543 45566676666543 56777775555 8887777 2334555677777643211
Q ss_pred HHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHH
Q 015024 145 FREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEE 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~ 224 (414)
.... -=+++|-+|.....+++.|.+.|.+.++ +.. ..+- .+...|..++.+..+.+.+.
T Consensus 86 -~~~~--------~npH~Wldp~~~~~~~~~Ia~~L~~~~P-~~~----------~~y~-~N~~~~~~~L~~l~~~~~~~ 144 (256)
T PF01297_consen 86 -DHHG--------HNPHVWLDPENAKKMAEAIADALSELDP-ANK----------DYYE-KNAEKYLKELDELDAEIKEK 144 (256)
T ss_dssp -STTC--------BESTGGGSHHHHHHHHHHHHHHHHHHTG-GGH----------HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCC--------CCCchHHHHHHHHHHHHHHHHHHHHhCc-cch----------HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 0000 1356888999999999999998876532 210 0111 34455777777777777666
Q ss_pred hccccCC---------------CCE-EEEEecCcCCCCCCCCcHH--HHHHH-HhhcCCceEEEEcccccccchhhHHHH
Q 015024 225 LEKRKIT---------------NAY-TLAYQSRVGPVEWLKPYTD--ETIIK-LGQKGVKSLLAVPISFVSEHIETLEEI 285 (414)
Q Consensus 225 l~~~~~~---------------~~~-~lafQSr~G~~~WL~P~t~--d~L~~-L~~~G~k~VvVvP~gFvsD~lETl~Ei 285 (414)
+..-... -.+ .++.++ .+++ .+|+.. ..+.+ +.+.|+ ++++..+.+-....++|
T Consensus 145 ~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~-~~~~--~~ps~~~l~~l~~~ik~~~v-~~i~~e~~~~~~~~~~l--- 217 (256)
T PF01297_consen 145 LAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIE-ISPG--EEPSPKDLAELIKLIKENKV-KCIFTEPQFSSKLAEAL--- 217 (256)
T ss_dssp HTTSSGGEEEEEESTTHHHHHHTT-EEEEEES-SSSS--SSS-HHHHHHHHHHHHHTT--SEEEEETTS-THHHHHH---
T ss_pred hhcccCCeEEEEChHHHHHHHhcCCceeeeec-cccc--cCCCHHHHHHHHHHhhhcCC-cEEEecCCCChHHHHHH---
Confidence 5421100 001 122331 1221 234333 33333 344454 45666677777655544
Q ss_pred HHHHHHHHHhcCCeeEEEcCCC----CCCHHHHHHHHHHHH
Q 015024 286 DVEYKELALKSGIEKWGRVPAL----GCEATFISDLADAVI 322 (414)
Q Consensus 286 d~e~~e~a~~~G~~~~~~vp~l----Nd~p~fi~~La~lV~ 322 (414)
+++.|.+ ...+..+ .+...+++.|.+.+.
T Consensus 218 -------a~~~g~~-vv~ld~l~~~~~~~~~y~~~~~~n~~ 250 (256)
T PF01297_consen 218 -------AKETGVK-VVYLDPLGGGIPDGDSYLDMMEQNLD 250 (256)
T ss_dssp -------HHCCT-E-EEESSTTCSTTSSTTSHHHHHHHHHH
T ss_pred -------HHHcCCc-EEEeCCCcCCCCCcCCHHHHHHHHHH
Confidence 6688886 6777777 556677877766554
No 84
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=70.68 E-value=1e+02 Score=31.50 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=28.4
Q ss_pred HHHHHHHHhhccCCCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEE
Q 015024 77 QAEELRKSLWEKNLPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVL 123 (414)
Q Consensus 77 qa~~L~~~L~~~~~~~~V~~amry~~P----~i~e~l~~l~~~G~~~Iivl 123 (414)
|+..+.+.|.+.|.++.+...++..++ .+.+++.++....++-||+.
T Consensus 21 ~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfT 71 (381)
T PRK07239 21 RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVAT 71 (381)
T ss_pred CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEe
Confidence 566677777776766555545554333 45566767665567766643
No 85
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.43 E-value=1.2e+02 Score=29.72 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=57.2
Q ss_pred CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCccc----------ccchHHHHHHHHHHHHhccccCCcceEEeC
Q 015024 91 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS----------ISTSGSSLRLLESIFREDEYLVNMQHTVIP 160 (414)
Q Consensus 91 ~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS----------~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~ 160 (414)
+.+|.+|+-=..|+..+-.++.+++|-+=++=+||-|..- ..+.+-..+.+.+++.+...+..+.=+...
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs 131 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGS 131 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhh
Confidence 4578999988889999999999999999999999998421 222223334444444433333333334555
Q ss_pred CCCCChHHHHHHHHHHHH
Q 015024 161 SWYQREGYITAMANLIEK 178 (414)
Q Consensus 161 ~~~~~p~yI~a~a~~I~~ 178 (414)
.|-.++.-.+.+.+.+++
T Consensus 132 ~~tsn~~aM~~~m~~Lk~ 149 (250)
T COG2861 132 RFTSNEDAMEKLMEALKE 149 (250)
T ss_pred hhcCcHHHHHHHHHHHHH
Confidence 666777666665555443
No 86
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=61.88 E-value=23 Score=31.88 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHhhcCCceEEEEccccccc--chhhHHHHHHHHHHHHHhcCCeeEEEcCCCC
Q 015024 246 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSE--HIETLEEIDVEYKELALKSGIEKWGRVPALG 308 (414)
Q Consensus 246 ~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD--~lETl~Eid~e~~e~a~~~G~~~~~~vp~lN 308 (414)
+|+.|.+.++|++|.++|++=|+|-.=+=++- ...++.++......++++.|+.-..+++|-+
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 46788999999999999965555545544544 4567788888888888899998666776665
No 87
>PLN02591 tryptophan synthase
Probab=59.86 E-value=49 Score=32.27 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=54.5
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHH
Q 015024 234 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 313 (414)
Q Consensus 234 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~f 313 (414)
+-++|-+- .++.-.++.++++++.|++-+++...-+ |=..++++.++++|+. ...+=+++.+++-
T Consensus 82 ilm~Y~N~-----i~~~G~~~F~~~~~~aGv~GviipDLP~---------ee~~~~~~~~~~~gl~-~I~lv~Ptt~~~r 146 (250)
T PLN02591 82 VLFTYYNP-----ILKRGIDKFMATIKEAGVHGLVVPDLPL---------EETEALRAEAAKNGIE-LVLLTTPTTPTER 146 (250)
T ss_pred EEEecccH-----HHHhHHHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHHcCCe-EEEEeCCCCCHHH
Confidence 56777663 2567888999999999999998886543 2233588888999996 4455568888888
Q ss_pred HHHHHHHH
Q 015024 314 ISDLADAV 321 (414)
Q Consensus 314 i~~La~lV 321 (414)
++.+++.-
T Consensus 147 i~~ia~~~ 154 (250)
T PLN02591 147 MKAIAEAS 154 (250)
T ss_pred HHHHHHhC
Confidence 88887764
No 88
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=58.55 E-value=1.5e+02 Score=28.39 Aligned_cols=119 Identities=10% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHcCCCEEEEEecCCcccccchHHH--HHHHHHHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCce
Q 015024 112 IKRDGITKLVVLPLYPQFSISTSGSS--LRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQV 189 (414)
Q Consensus 112 l~~~G~~~IivlPLyPqyS~~Ttgs~--~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~ 189 (414)
+.++ .+=+.++-++|+.+.+...+. .+.+....+.. ++++..+..-.....|.+.+.+.+++. + -+
T Consensus 20 a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~al----gipl~~~~~~~~~e~~~e~l~~~l~~~----g-v~-- 87 (223)
T TIGR00290 20 ALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESI----GIPLIKLYTEGTEEDEVEELKGILHTL----D-VE-- 87 (223)
T ss_pred HHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCCeEEeecCCCccHHHHHHHHHHHHc----C-CC--
Confidence 3344 666677778887432222221 12222111111 234444444455677887777766553 1 11
Q ss_pred EEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 190 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 190 ~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
+++| ||-+......=.+.+++++|+.. +.- =|-.+ ..+.++++.+.|++.+++
T Consensus 88 ~vv~-------------GdI~s~~qr~~~e~v~~~lgl~~----~~P---------LW~~~-~~~ll~e~i~~G~~aiIv 140 (223)
T TIGR00290 88 AVVF-------------GAIYSEYQKTRIERVCRELGLKS----FAP---------LWHRD-PEKLMEEFVEEKFEARII 140 (223)
T ss_pred EEEE-------------CCcccHHHHHHHHHHHHhcCCEE----ecc---------ccCCC-HHHHHHHHHHcCCeEEEE
Confidence 3554 88877777777788889887631 111 14444 456999999999988775
No 89
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.69 E-value=58 Score=34.48 Aligned_cols=140 Identities=16% Similarity=0.245 Sum_probs=76.7
Q ss_pred CHHHHH---HHHHHcCCCEEEEEecCCcccccchHHHH----HHHHHHHHhcccc---CCcceEEeCCCCCChHHHHHHH
Q 015024 104 FTEEAI---EQIKRDGITKLVVLPLYPQFSISTSGSSL----RLLESIFREDEYL---VNMQHTVIPSWYQREGYITAMA 173 (414)
Q Consensus 104 ~i~e~l---~~l~~~G~~~IivlPLyPqyS~~Ttgs~~----~~~~e~~~~~~~~---~~~~~~~i~~~~~~p~yI~a~a 173 (414)
.+++.+ ++|+++|+++|+++-.= .++.|.-. ..+.+.++..... ..+++..+.+..-.+.+|++++
T Consensus 174 ~~e~Il~ev~~Lv~~G~kEI~L~gqd----v~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~ 249 (437)
T COG0621 174 PPEDILKEVKRLVAQGVKEIVLTGQD----VNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIA 249 (437)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEe----hhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHh
Confidence 345554 56678999999998762 11111111 1133444332222 2345666667777777777777
Q ss_pred H--HHHHHHHhCCCCCceEEEEeecCChhhhhcccCCc---------h-HHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024 174 N--LIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP---------Y-KAEMEECVDLIMEELEKRKITNAYTLAYQSR 241 (414)
Q Consensus 174 ~--~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDp---------Y-~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr 241 (414)
+ +|-.++ | ||+ ..||. | ..+..+..+.+.+....--+..++-++|=.
T Consensus 250 ~~~kv~~~l---------------H-lPv----QsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPg- 308 (437)
T COG0621 250 ETPKVCPHL---------------H-LPV----QSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPG- 308 (437)
T ss_pred cCCcccccc---------------c-Ccc----ccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCC-
Confidence 5 333332 1 232 22332 5 455566666776665321111223344421
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCceEEEEccc
Q 015024 242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS 273 (414)
Q Consensus 242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~g 273 (414)
+ ++-+.+++++=+.+-+..++-++++|
T Consensus 309 ---E--TeedFe~tl~lv~e~~fd~~~~F~YS 335 (437)
T COG0621 309 ---E--TEEDFEETLDLVEEVRFDRLHVFKYS 335 (437)
T ss_pred ---C--CHHHHHHHHHHHHHhCCCEEeeeecC
Confidence 2 45788888888888899999888865
No 90
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.82 E-value=2.1e+02 Score=27.81 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=73.4
Q ss_pred CceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceE-EeCCCCCC
Q 015024 91 PAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT-VIPSWYQR 165 (414)
Q Consensus 91 ~~~V~~amry~~P----~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~-~i~~~~~~ 165 (414)
+.++. .|-|.+| .+++-++++++.|++.+++-.+ |. .. ..++.+.+++. ++... .+.+ ...
T Consensus 87 ~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~------ee-~~~~~~~~~~~----gl~~i~lv~P-~T~ 152 (256)
T TIGR00262 87 NIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL------EE-SGDLVEAAKKH----GVKPIFLVAP-NAD 152 (256)
T ss_pred CCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch------HH-HHHHHHHHHHC----CCcEEEEECC-CCC
Confidence 45655 8999999 5667788999999998887766 31 11 12233333332 22222 3332 223
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 015024 166 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 245 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~ 245 (414)
+.-++.+++. . +...++.|-.|.- .....+..++.+..+.+++..+. ++.+.| |
T Consensus 153 ~eri~~i~~~-------~---~gfiy~vs~~G~T-----G~~~~~~~~~~~~i~~lr~~~~~-----pi~vgf----G-- 206 (256)
T TIGR00262 153 DERLKQIAEK-------S---QGFVYLVSRAGVT-----GARNRAASALNELVKRLKAYSAK-----PVLVGF----G-- 206 (256)
T ss_pred HHHHHHHHHh-------C---CCCEEEEECCCCC-----CCcccCChhHHHHHHHHHhhcCC-----CEEEeC----C--
Confidence 3333333321 1 2234566765661 11123666777888888876432 344443 3
Q ss_pred CCCCCcHHHHHHHHhhcCCceEEEE
Q 015024 246 EWLKPYTDETIIKLGQKGVKSLLAV 270 (414)
Q Consensus 246 ~WL~P~t~d~L~~L~~~G~k~VvVv 270 (414)
=++.+.++++.+.|..-|+|=
T Consensus 207 ----I~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 207 ----ISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEC
Confidence 234456677777777654443
No 91
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=54.13 E-value=1.8e+02 Score=26.65 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHH--HHHHHHH-HcCCCEEEEEec
Q 015024 67 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIK-RDGITKLVVLPL 125 (414)
Q Consensus 67 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~--e~l~~l~-~~G~~~IivlPL 125 (414)
.+||....++||+.+.+.|...+.++. .-|+.|.-. ++.+.+. ..|.. +.+.+.
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~----~i~sS~l~Ra~~TA~~~a~~~~~~-~~~~~~ 82 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFD----AIYSSPLKRAQQTAEPLAEELGLP-LEVDDR 82 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCC----EEEECchHHHHHHHHHHHHhcCCC-ceecCC
Confidence 569999999999999999974322222 226777654 3333333 34555 444443
No 92
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=53.73 E-value=2e+02 Score=27.67 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVI 322 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~ 322 (414)
+..+++++.+++.| +.+=|-.=|+--.+-|+. -..+.-+.+.+.|+. + ++|+|....+-+..-..
T Consensus 185 ~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~y--P~~~il~~~~~~g~~-i----tlgSDAH~~~~vg~~~~ 249 (253)
T TIGR01856 185 ELLQRILKLVASQG-KALEFNTSGLRKPLEEAY--PSKELLNLAKELGIP-L----VLGSDAHGPGDVGLSYH 249 (253)
T ss_pred HHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCC--CCHHHHHHHHHcCCC-E----EecCCCCCHHHHhhhHH
Confidence 45778888888877 233333334433333321 112355666777875 4 67888777766655443
No 93
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=53.05 E-value=71 Score=30.54 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCC------
Q 015024 171 AMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP------ 244 (414)
Q Consensus 171 a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~------ 244 (414)
+..+.+.+.++..+. + .+++-.||- .-.+.+.+.++++ +...++.++ ..+..+|-|....
T Consensus 3 ~~~~~~~~~l~~~~~-~--~vlvfVHGy--------n~~f~~a~~r~aq-l~~~~~~~~--~~i~FsWPS~g~~~~Y~~d 68 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPD-K--EVLVFVHGY--------NNSFEDALRRAAQ-LAHDLGFPG--VVILFSWPSDGSLLGYFYD 68 (233)
T ss_pred HHHHHHHHHHhhCCC-C--eEEEEEeCC--------CCCHHHHHHHHHH-HHHHhCCCc--eEEEEEcCCCCChhhhhhh
Confidence 445666666665432 2 266668888 1236666666665 455565543 3467778776432
Q ss_pred ---CCCCCCcHHHHHHHHhhc-CCceEEEEcccccccc-hhhHHHHHHHHHH--HHHhcCCeeEEEcCCCCCCHHHHHHH
Q 015024 245 ---VEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEH-IETLEEIDVEYKE--LALKSGIEKWGRVPALGCEATFISDL 317 (414)
Q Consensus 245 ---~~WL~P~t~d~L~~L~~~-G~k~VvVvP~gFvsD~-lETl~Eid~e~~e--~a~~~G~~~~~~vp~lNd~p~fi~~L 317 (414)
..|..|...+.|+.|.+. |.++|-+++=|.=+-. +|+|..+..+... ..... .+...+.+--+...|...+
T Consensus 69 ~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~--~~viL~ApDid~d~f~~~~ 146 (233)
T PF05990_consen 69 RESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARF--DNVILAAPDIDNDVFRSQL 146 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhh--heEEEECCCCCHHHHHHHH
Confidence 457778889999999988 8899999875532222 3455666555542 22222 2445554444556677766
Q ss_pred HHHH
Q 015024 318 ADAV 321 (414)
Q Consensus 318 a~lV 321 (414)
..+.
T Consensus 147 ~~~~ 150 (233)
T PF05990_consen 147 PDLG 150 (233)
T ss_pred HHHh
Confidence 6544
No 94
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=52.86 E-value=1.9e+02 Score=26.79 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=54.9
Q ss_pred cceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCC
Q 015024 154 MQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 233 (414)
Q Consensus 154 ~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~ 233 (414)
+++..++--.+++.|.+.+.+.+++..++ + -..+++ ||-+-+...+=.+.+++++|+..
T Consensus 59 ipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g---~~~vv~-------------G~i~sd~~~~~~e~~~~~~gl~~---- 117 (194)
T cd01994 59 IPLIRIEISGEEEDEVEDLKELLRKLKEE-G---VDAVVF-------------GAILSEYQRTRVERVCERLGLEP---- 117 (194)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHHHHHHc-C---CCEEEE-------------CccccHHHHHHHHHHHHHcCCEE----
Confidence 44455543338899999999988886543 2 113443 66666656666778888887631
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 234 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 234 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
+. -=|-.| .++.++++.+.|++.+++
T Consensus 118 --~~-------PLW~~~-~~~ll~e~~~~g~~~~iv 143 (194)
T cd01994 118 --LA-------PLWGRD-QEELLREMIEAGFKAIII 143 (194)
T ss_pred --Ee-------cccCCC-HHHHHHHHHHcCCeEEEE
Confidence 11 115444 466999999999987664
No 95
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.62 E-value=1e+02 Score=30.23 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=52.4
Q ss_pred EEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHH
Q 015024 234 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 313 (414)
Q Consensus 234 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~f 313 (414)
+-++|-+-+ .+--+++.++++++.|++-++|....+ +| ..++.+.++++|+.. +..=++|++++-
T Consensus 93 vlm~Y~N~i-----~~~G~e~f~~~~~~aGvdGviipDLp~--------ee-~~~~~~~~~~~gl~~-I~lvap~t~~er 157 (258)
T PRK13111 93 VLMTYYNPI-----FQYGVERFAADAAEAGVDGLIIPDLPP--------EE-AEELRAAAKKHGLDL-IFLVAPTTTDER 157 (258)
T ss_pred EEEecccHH-----hhcCHHHHHHHHHHcCCcEEEECCCCH--------HH-HHHHHHHHHHcCCcE-EEEeCCCCCHHH
Confidence 566776632 345778899999999999998854432 22 335788888999974 443468888888
Q ss_pred HHHHHHHHH
Q 015024 314 ISDLADAVI 322 (414)
Q Consensus 314 i~~La~lV~ 322 (414)
++.+++.-.
T Consensus 158 i~~i~~~s~ 166 (258)
T PRK13111 158 LKKIASHAS 166 (258)
T ss_pred HHHHHHhCC
Confidence 888877643
No 96
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=50.45 E-value=2.2e+02 Score=27.70 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=62.0
Q ss_pred ecCCCCHHH---HHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCCCCCChHHHHHHHHH
Q 015024 99 RYWHPFTEE---AIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANL 175 (414)
Q Consensus 99 ry~~P~i~e---~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~ 175 (414)
+=+.|+..+ +++++.++| ++|+++++. +.-+|++.. +..+.+. .++.+++++++...-.+.-.. +..
T Consensus 58 ~TS~ps~~~~~~~~~~l~~~~-~~vi~i~iS----s~lSgty~~-a~~aa~~---~~~~~i~ViDS~~~s~~~g~~-v~~ 127 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKLLEEG-DEVLSIHLS----SGLSGTYQS-ARQAAEM---VDEAKVTVIDSKSASMGLGLL-VLE 127 (275)
T ss_pred CcCCCCHHHHHHHHHHHHhCC-CeEEEEEcC----CchhHHHHH-HHHHHhh---CCCCCEEEECChHHHHHHHHH-HHH
Confidence 347888775 555666788 899999994 444444432 2222211 233468999987655443322 222
Q ss_pred HHHHHHhC----------C-CCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccc
Q 015024 176 IEKELQNF----------D-SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKR 228 (414)
Q Consensus 176 I~~~l~~~----------~-~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~ 228 (414)
+.+.+++- . -.++.+..|+...+ ++. .+|.. +-.++..++..|++.
T Consensus 128 a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~v~~L--~~L-~~gGR----is~~~~~~g~lL~ik 184 (275)
T TIGR00762 128 AAKLAEEGKSLEEILAKLEELRERTKLYFVVDTL--EYL-VKGGR----ISKAAALIGSLLNIK 184 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECcH--HHH-HhcCC----ccHHHHHHHHhhcce
Confidence 22222110 0 02345677877766 444 23332 566777888888764
No 97
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.97 E-value=2.5e+02 Score=26.83 Aligned_cols=160 Identities=12% Similarity=0.128 Sum_probs=76.9
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecCCc-ccccchHHHHHHHHHHHHhccccCCcceEEeCC----C-----CCChHHH
Q 015024 100 YWHPFTEEAIEQIKRDGITKLVVLPLYPQ-FSISTSGSSLRLLESIFREDEYLVNMQHTVIPS----W-----YQREGYI 169 (414)
Q Consensus 100 y~~P~i~e~l~~l~~~G~~~IivlPLyPq-yS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~----~-----~~~p~yI 169 (414)
|+.-.+++.++.+++.|++.|=+..-+|+ |....+..-.+++.+.+++. ++++.-+.. | ..++...
T Consensus 10 ~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~----gl~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 10 HQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTY----QMPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred heeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHc----CCeEEEecCcccCcCccccCCCHHHH
Confidence 44557999999999999998877654443 11111222344555555433 334433321 1 2345555
Q ss_pred HHHHHHHHHHHH---hCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCC
Q 015024 170 TAMANLIEKELQ---NFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVE 246 (414)
Q Consensus 170 ~a~a~~I~~~l~---~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~ 246 (414)
++..+.+++.++ .++. +..++...|. ... ...+...+...+..+.+++.... ..+.+++-.......
T Consensus 86 ~~~~~~~~~~i~~a~~lGa--~~i~~~~~~~---~~~-~~~~~~~~~~~~~l~~l~~~a~~----~gv~l~iE~~~~~~~ 155 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNA--GYTLISAAHA---GYL-TPPNVIWGRLAENLSELCEYAEN----IGMDLILEPLTPYES 155 (275)
T ss_pred HHHHHHHHHHHHHHHHhCC--CEEEEcCCCC---CCC-CCHHHHHHHHHHHHHHHHHHHHH----cCCEEEEecCCCCcc
Confidence 555555555443 2332 2222222221 111 11122333333444444444432 237889887422234
Q ss_pred CCCCcHHHHHHHHhhcCCceEEE-Eccc
Q 015024 247 WLKPYTDETIIKLGQKGVKSLLA-VPIS 273 (414)
Q Consensus 247 WL~P~t~d~L~~L~~~G~k~VvV-vP~g 273 (414)
|.-++..+.++-+..-+..++-+ +.++
T Consensus 156 ~~~~t~~~~~~l~~~~~~~~v~~~~D~~ 183 (275)
T PRK09856 156 NVVCNANDVLHALALVPSPRLFSMVDIC 183 (275)
T ss_pred cccCCHHHHHHHHHHcCCCcceeEEeec
Confidence 55566666666555555455433 3344
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.85 E-value=1.8e+02 Score=27.88 Aligned_cols=133 Identities=11% Similarity=0.191 Sum_probs=71.1
Q ss_pred eCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHH--------HHHHHHHHhccccC
Q 015024 159 IPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEE--------CVDLIMEELEKRKI 230 (414)
Q Consensus 159 i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~--------t~~~l~e~l~~~~~ 230 (414)
.-.|.+.+.+.+++ +.+.+. .+ .+=+ |+|.+..-..|...++.+.+ ..+.+++...
T Consensus 11 ~~G~p~~~~~~~~~-~~l~~~-ad-------~iEl---gip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~---- 74 (244)
T PRK13125 11 TAGYPNVESFKEFI-IGLVEL-VD-------ILEL---GIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVS---- 74 (244)
T ss_pred eCCCCCHHHHHHHH-HHHHhh-CC-------EEEE---CCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCC----
Confidence 33677777777743 344443 21 1112 55666542234344444444 3333333221
Q ss_pred CCCE-EEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCC
Q 015024 231 TNAY-TLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC 309 (414)
Q Consensus 231 ~~~~-~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd 309 (414)
.|+ .++|-|-+ .-..++.++++.+.|+..|.+... +.|+.++++ +..+.++++|.+- ...=.+++
T Consensus 75 -~Pl~lM~y~n~~------~~~~~~~i~~~~~~Gadgvii~dl-----p~e~~~~~~-~~~~~~~~~Gl~~-~~~v~p~T 140 (244)
T PRK13125 75 -VPIILMTYLEDY------VDSLDNFLNMARDVGADGVLFPDL-----LIDYPDDLE-KYVEIIKNKGLKP-VFFTSPKF 140 (244)
T ss_pred -CCEEEEEecchh------hhCHHHHHHHHHHcCCCEEEECCC-----CCCcHHHHH-HHHHHHHHcCCCE-EEEECCCC
Confidence 233 34666632 235566788888999888887421 234444443 4677788999863 33334566
Q ss_pred CHHHHHHHHHHH
Q 015024 310 EATFISDLADAV 321 (414)
Q Consensus 310 ~p~fi~~La~lV 321 (414)
+.+-++.+.+..
T Consensus 141 ~~e~l~~~~~~~ 152 (244)
T PRK13125 141 PDLLIHRLSKLS 152 (244)
T ss_pred CHHHHHHHHHhC
Confidence 666666665544
No 99
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=43.62 E-value=2.3e+02 Score=27.55 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhh-hhc-ccC-Cch-HHHH--HHH---HHHHHHHhccccCC
Q 015024 161 SWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLA-YVE-EAG-DPY-KAEM--EEC---VDLIMEELEKRKIT 231 (414)
Q Consensus 161 ~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~-~i~-~~G-DpY-~~~~--~~t---~~~l~e~l~~~~~~ 231 (414)
+|+.++.+++.+++.|++..+. + -++.+|.- =|=.-| ++. .+| |.. .+++ ..| +.+++..|+..+
T Consensus 22 ~~gid~~~i~~~a~~i~~~~~~-g--~eV~iVvG-GGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~-- 95 (238)
T COG0528 22 GFGIDPEVLDRIANEIKELVDL-G--VEVAVVVG-GGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLG-- 95 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-C--cEEEEEEC-CCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcC--
Confidence 5889999999999999988753 1 24444432 121111 110 011 111 1111 222 245566664322
Q ss_pred CCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEc-----ccccccchhhHHHHHHHHH
Q 015024 232 NAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVP-----ISFVSEHIETLEEIDVEYK 290 (414)
Q Consensus 232 ~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP-----~gFvsD~lETl~Eid~e~~ 290 (414)
+...-||...-..--+|+......+.-++| +|+|+- |+|++|-.-.|--..++..
T Consensus 96 --~~~~v~sai~~~~~~e~~~~~~A~~~l~~g--rVvIf~gGtg~P~fTTDt~AALrA~ei~ad 155 (238)
T COG0528 96 --VDTRVQSAIAMPQVAEPYSRREAIRHLEKG--RVVIFGGGTGNPGFTTDTAAALRAEEIEAD 155 (238)
T ss_pred --CcceecccccCccccCccCHHHHHHHHHcC--CEEEEeCCCCCCCCchHHHHHHHHHHhCCc
Confidence 445667765422345788888777777776 677764 7899999866655444443
No 100
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=43.55 E-value=79 Score=26.62 Aligned_cols=35 Identities=6% Similarity=0.279 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCC
Q 015024 210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEW 247 (414)
Q Consensus 210 Y~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~W 247 (414)
...-..+.++.+.+.||.+. +++.+.|+- ..+..|
T Consensus 74 k~~l~~~i~~~l~~~lgi~~--~rv~I~f~~-~~~~~w 108 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKS--ERVYIEFKD-CSAQNW 108 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCc--ccEEEEEEE-CChhhe
Confidence 55556677788888888865 348888864 344444
No 101
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=43.36 E-value=3.5e+02 Score=27.00 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=78.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEe
Q 015024 160 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 239 (414)
Q Consensus 160 ~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQ 239 (414)
+++|-+|.....+++.|.+.|.+.++ +.. .+.+++.+.|..++.+.-+.+++.+.-.. +..-++|-
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP-~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~l~~~~--~~~~i~~H 210 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMP-QSK-----------AKLDANLKDFEAQLAQTDKQIGNQLAPVK--GKGYFVFH 210 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCh-hhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcEEEEC
Confidence 67999999999999999999977642 220 11124556788888888888887764211 11112211
Q ss_pred cC-------cC--------CCCCCCCcHHH---HHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeE
Q 015024 240 SR-------VG--------PVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 301 (414)
Q Consensus 240 Sr-------~G--------~~~WL~P~t~d---~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~ 301 (414)
.. +| ..+=-+|+..+ .++.+.+.++ +++++-+.|-..-.+++ +++.|.+ .
T Consensus 211 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v-~~If~e~~~~~~~~~~l----------a~e~g~~-v 278 (311)
T PRK09545 211 DAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKA-TCVFAEPQFRPAVIESV----------AKGTSVR-M 278 (311)
T ss_pred chHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCC-CEEEecCCCChHHHHHH----------HHhcCCe-E
Confidence 11 11 11113465544 3444445565 55666667766555444 4577875 5
Q ss_pred EEcCCCCCC-----HHHHHHHHHHHH
Q 015024 302 GRVPALGCE-----ATFISDLADAVI 322 (414)
Q Consensus 302 ~~vp~lNd~-----p~fi~~La~lV~ 322 (414)
..+..+.+. ..+.+.|...+.
T Consensus 279 ~~ldpl~~~~~~~~~~Y~~~m~~n~~ 304 (311)
T PRK09545 279 GTLDPLGTNIKLGKDSYSEFLSQLAN 304 (311)
T ss_pred EEeccccccccCCHhHHHHHHHHHHH
Confidence 566555432 466666655553
No 102
>PRK03906 mannonate dehydratase; Provisional
Probab=43.09 E-value=42 Score=34.90 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=46.9
Q ss_pred CCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHH
Q 015024 245 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEAT 312 (414)
Q Consensus 245 ~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~ 312 (414)
-+|.+|+-...|+.++..|++.|+..-...-.+-+=|+++| .+.++..+++|.+ +..|++++-|+.
T Consensus 5 ~rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i-~~~~~~ie~~Gl~-~~vvEs~pv~~~ 70 (385)
T PRK03906 5 WRWFGPNDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEI-LARKAEIEAAGLE-WSVVESVPVHED 70 (385)
T ss_pred EEEeCCCCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCCe-EEEEeCCCccHH
Confidence 36899988889999888999999865433223334445554 2356777789985 888998888863
No 103
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=42.03 E-value=1.1e+02 Score=29.27 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEE
Q 015024 207 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 207 GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
||-+......=.+.+++++|+. ..| -=|-. +..+.++++.+.|++.++|
T Consensus 92 GdI~~~~~r~~~e~vc~~lGl~-------~~~------PLW~~-d~~~ll~e~i~~Gf~aiIv 140 (218)
T PF01902_consen 92 GDIDSEYQRNWVERVCERLGLE-------AVF------PLWGR-DREELLREFIESGFEAIIV 140 (218)
T ss_dssp -TTS-HHHHHHHHHHHHHCT-E-------EE-------TTTT---HHHHHHHHHHTT-EEEEE
T ss_pred CcCCcHHHHHHHHHHHHHcCCE-------EEe------cccCC-CHHHHHHHHHHCCCeEEEE
Confidence 8888887788888899998753 211 11544 5567999999999988777
No 104
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=41.29 E-value=43 Score=33.45 Aligned_cols=39 Identities=36% Similarity=0.533 Sum_probs=27.3
Q ss_pred CCceEEEEeecCChhhhhc---ccC-------CchHHHHHHHHHHHHHH
Q 015024 186 PEQVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLIMEE 224 (414)
Q Consensus 186 ~~~~~LlfSaHgiP~~~i~---~~G-------DpY~~~~~~t~~~l~e~ 224 (414)
|+...++|||||+|...-+ ++| .|+...++..++..+++
T Consensus 65 p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~ 113 (294)
T COG0761 65 PDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYARE 113 (294)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhC
Confidence 4555799999999987642 233 47888877777666653
No 105
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=40.94 E-value=29 Score=32.86 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=36.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 015024 65 GGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 127 (414)
Q Consensus 65 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyP 127 (414)
|=||.++.+|.+--..|- +| +++|.|+..+++|+++|++.|+++.=|-
T Consensus 9 G~gsR~~plT~~tpK~Ll----------kV-----~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 9 GLGSRFVPLTQSTPKSLL----------KV-----NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ccccccccccccCChHHH----------Hh-----cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 557877777765433332 12 3899999999999999999999998773
No 106
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=40.85 E-value=84 Score=31.78 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHH
Q 015024 137 SLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEE 216 (414)
Q Consensus 137 ~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~ 216 (414)
...++.+.++..+...-.-+.+-.+|+.| ++++...|.+. .+=++--|+|.+. .+=|.-
T Consensus 29 ~VeDLddkFkdnkdddiW~VdFYAPWC~H-------CKkLePiWdeV------G~elkdig~PikV--GKlDaT------ 87 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWFVDFYAPWCAH-------CKKLEPIWDEV------GHELKDIGLPIKV--GKLDAT------ 87 (468)
T ss_pred hhhhhhHHhhhcccCCeEEEEeechhhhh-------cccccchhHHh------CcchhhcCCceee--cccccc------
Confidence 34556655554432221224444556544 33444444332 2345666888885 333421
Q ss_pred HHHHHHHHhccccCCCCEEEEEecCcCC-CCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHh
Q 015024 217 CVDLIMEELEKRKITNAYTLAYQSRVGP-VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALK 295 (414)
Q Consensus 217 t~~~l~e~l~~~~~~~~~~lafQSr~G~-~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~ 295 (414)
..-+|+.+++..+.. ++-|- |.|. ...-+|.+.|.|-+.++.-. ..+ +|.+-+-.++..++...
T Consensus 88 ~f~aiAnefgiqGYP---TIk~~-kgd~a~dYRG~R~Kd~iieFAhR~a-~ai----------I~pi~enQ~~fehlq~R 152 (468)
T KOG4277|consen 88 RFPAIANEFGIQGYP---TIKFF-KGDHAIDYRGGREKDAIIEFAHRCA-AAI----------IEPINENQIEFEHLQAR 152 (468)
T ss_pred cchhhHhhhccCCCc---eEEEe-cCCeeeecCCCccHHHHHHHHHhcc-cce----------eeecChhHHHHHHHhhc
Confidence 123688889887632 23332 2222 44557889999999887421 112 35566777777777655
Q ss_pred cCCeeEEEcCCCCCCHHHH
Q 015024 296 SGIEKWGRVPALGCEATFI 314 (414)
Q Consensus 296 ~G~~~~~~vp~lNd~p~fi 314 (414)
+.. .|++.. -+.+|.|-
T Consensus 153 hq~-ffVf~G-tge~PL~d 169 (468)
T KOG4277|consen 153 HQP-FFVFFG-TGEGPLFD 169 (468)
T ss_pred cCc-eEEEEe-CCCCcHHH
Confidence 554 577775 35666553
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.52 E-value=3.2e+02 Score=25.78 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCEEEEEecCCc--ccc----cchHHHHHHHHHHHHhcccc-CCcceEEeCCCC--CChHHHHHHHHHH
Q 015024 106 EEAIEQIKRDGITKLVVLPLYPQ--FSI----STSGSSLRLLESIFREDEYL-VNMQHTVIPSWY--QREGYITAMANLI 176 (414)
Q Consensus 106 ~e~l~~l~~~G~~~IivlPLyPq--yS~----~Ttgs~~~~~~e~~~~~~~~-~~~~~~~i~~~~--~~p~yI~a~a~~I 176 (414)
.+.++.+.+.|++.|.+. +..- +.. .+....++.+.+.++..+.. -.+.+....-+. .++.++..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 777888888898775543 3210 000 11111333343333322211 123344445566 8999998888777
Q ss_pred HHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHH
Q 015024 177 EKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETI 256 (414)
Q Consensus 177 ~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L 256 (414)
.+.- .+. +-+ .+..|-..+.++.+..+.+.+.++. ..+.|-.+=. ++=.+..++
T Consensus 156 ~~~g-----~~~--i~l---------~Dt~G~~~P~~v~~li~~l~~~~~~------~~~~~H~Hn~----~gla~an~l 209 (265)
T cd03174 156 EEAG-----ADE--ISL---------KDTVGLATPEEVAELVKALREALPD------VPLGLHTHNT----LGLAVANSL 209 (265)
T ss_pred HHcC-----CCE--EEe---------chhcCCcCHHHHHHHHHHHHHhCCC------CeEEEEeCCC----CChHHHHHH
Confidence 6542 122 222 1134777889999999999988741 3455543322 223456666
Q ss_pred HHHhhcCCceEEEE--cccccccchh
Q 015024 257 IKLGQKGVKSLLAV--PISFVSEHIE 280 (414)
Q Consensus 257 ~~L~~~G~k~VvVv--P~gFvsD~lE 280 (414)
..+ +.|++.|..- ++|=-+.|.-
T Consensus 210 aA~-~aG~~~id~s~~G~G~~~Gn~~ 234 (265)
T cd03174 210 AAL-EAGADRVDGSVNGLGERAGNAA 234 (265)
T ss_pred HHH-HcCCCEEEeccccccccccCcc
Confidence 665 5688877654 4554566654
No 108
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=40.17 E-value=1.5e+02 Score=29.04 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCCCHHH---HHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCCCCCChHH
Q 015024 101 WHPFTEE---AIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGY 168 (414)
Q Consensus 101 ~~P~i~e---~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~y 168 (414)
+.|+..+ +++++..+|+++|+++++....|. |......+.+.+ ++.+++++++.....+.
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSg--ty~~a~~aa~~~------~~~~i~ViDS~~~s~g~ 123 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSG--TYNSARLAAKML------PDIKIHVIDSKSVSAGQ 123 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-T--HHHHHHHHHHHH------TTTEEEEEE-SS-HHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhh--HHHHHHHHHhhc------CcCEEEEEeCCCcchhh
Confidence 6888774 555666789999999999644332 222223333332 45678999997765543
No 109
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.72 E-value=1.9e+02 Score=28.31 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhccccCCCC-EEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHH
Q 015024 213 EMEECVDLIMEELEKRKITNA-YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKE 291 (414)
Q Consensus 213 ~~~~t~~~l~e~l~~~~~~~~-~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e 291 (414)
+|.+..+.+++.... | +-++|-+- ..+--.++.++++++.|++-|+|....+ | | ..++.+
T Consensus 78 ~~~~~~~~~r~~~~~-----p~vlm~Y~N~-----i~~~G~e~F~~~~~~aGvdgviipDLP~-----e---e-~~~~~~ 138 (263)
T CHL00200 78 KILSILSEVNGEIKA-----PIVIFTYYNP-----VLHYGINKFIKKISQAGVKGLIIPDLPY-----E---E-SDYLIS 138 (263)
T ss_pred HHHHHHHHHhcCCCC-----CEEEEecccH-----HHHhCHHHHHHHHHHcCCeEEEecCCCH-----H---H-HHHHHH
Confidence 444555555543221 3 56677552 2445778899999999999999876654 2 2 345788
Q ss_pred HHHhcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 015024 292 LALKSGIEKWGRVPALGCEATFISDLADAVI 322 (414)
Q Consensus 292 ~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~ 322 (414)
.++++|+. +...=+++++++-++.+++...
T Consensus 139 ~~~~~gi~-~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 139 VCNLYNIE-LILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred HHHHcCCC-EEEEECCCCCHHHHHHHHHhCC
Confidence 88999996 5565578999888888888765
No 110
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.83 E-value=60 Score=36.39 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=73.7
Q ss_pred HHHHhccccCCcceEEeCCCC-CChHHHHHHHHHHHHHHHhCC--CCC--ceEEEEeecCChhhhhccc-----C-----
Q 015024 143 SIFREDEYLVNMQHTVIPSWY-QREGYITAMANLIEKELQNFD--SPE--QVMIFFSAHGVPLAYVEEA-----G----- 207 (414)
Q Consensus 143 e~~~~~~~~~~~~~~~i~~~~-~~p~yI~a~a~~I~~~l~~~~--~~~--~~~LlfSaHgiP~~~i~~~-----G----- 207 (414)
..++..+..|...+-=.++|. .-|.|=..++..|++...+.. ..- +-..=---||+|+.+.-++ |
T Consensus 29 ~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~ 108 (1070)
T KOG0434|consen 29 TSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVM 108 (1070)
T ss_pred HHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHH
Confidence 334333434433332345565 347777888999988654321 100 0012235699998874232 1
Q ss_pred ----CchHHHHHHHH-------HHHHHHhccc-cCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcC--CceEEEEccc
Q 015024 208 ----DPYKAEMEECV-------DLIMEELEKR-KITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKG--VKSLLAVPIS 273 (414)
Q Consensus 208 ----DpY~~~~~~t~-------~~l~e~l~~~-~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G--~k~VvVvP~g 273 (414)
|-|+.+|++.+ +...++||.= +++|+|.+-|-|=+ -++=-+.++|.++| ++.+=|+|++
T Consensus 109 kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FM-------ESvWwvFkeL~~kglVYRG~kVMP~S 181 (1070)
T KOG0434|consen 109 KMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFM-------ESVWWVFKELHEKGLVYRGFKVMPYS 181 (1070)
T ss_pred HHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHH-------HHHHHHHHHHHhcCceecceeeeccc
Confidence 23999999887 5667777631 23455665554422 22333788998887 3567788855
Q ss_pred ccccchhhH
Q 015024 274 FVSEHIETL 282 (414)
Q Consensus 274 FvsD~lETl 282 (414)
+-|.--|
T Consensus 182 --Tac~TPL 188 (1070)
T KOG0434|consen 182 --TACTTPL 188 (1070)
T ss_pred --cccCCcc
Confidence 4444333
No 111
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=37.78 E-value=68 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhc
Q 015024 162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE 226 (414)
Q Consensus 162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~ 226 (414)
.+.++.-.+.++..|+.+|.... |.+ -|++|+||=| ..|.-|. ++.|++.+-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-p~K-PLvLSfHG~t-----GTGKN~V------a~iiA~n~~ 135 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-PRK-PLVLSFHGWT-----GTGKNYV------AEIIAENLY 135 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-CCC-CeEEEecCCC-----CCchhHH------HHHHHHHHH
Confidence 34566678888889999987643 344 4999999986 5676666 445555553
No 112
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.13 E-value=4.6e+02 Score=26.54 Aligned_cols=136 Identities=21% Similarity=0.177 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCch---HHHHHHHHHHHHHHhccccCCCCEEEEEecCc
Q 015024 166 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPY---KAEMEECVDLIMEELEKRKITNAYTLAYQSRV 242 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY---~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~ 242 (414)
..|++++.+.|...++..+. ..+.-|+- ..|.|- ..++.+..+.|.+.++.. ....++.-++-
T Consensus 30 ~~y~~~l~~Ei~~~~~~~~~-~~v~~i~~----------GGGtPs~l~~~~l~~ll~~i~~~~~~~---~~~eitie~np 95 (360)
T TIGR00539 30 EEYTQALCQDLKHALSQTDQ-EPLESIFI----------GGGTPNTLSVEAFERLFESIYQHASLS---DDCEITTEANP 95 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcccEEEe----------CCCchhcCCHHHHHHHHHHHHHhCCCC---CCCEEEEEeCC
Confidence 45999999888766544321 11223332 345552 577888888887776532 12456665542
Q ss_pred CCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHH-----HHHHHHHHHHHhcCCeeEE---EcCCCCCCHH-H
Q 015024 243 GPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEKWG---RVPALGCEAT-F 313 (414)
Q Consensus 243 G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~-----Eid~e~~e~a~~~G~~~~~---~vp~lNd~p~-f 313 (414)
+ --+.+.++.|.+.|+.+|-+=-=+|-.+.+..+. +--.+.-+.++++|+..+. ....++.+.+ |
T Consensus 96 ~------~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~ 169 (360)
T TIGR00539 96 E------LITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSL 169 (360)
T ss_pred C------CCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHH
Confidence 2 1356788888888988777655566665554442 2223344566778875332 2334566644 4
Q ss_pred HHHHHHHH
Q 015024 314 ISDLADAV 321 (414)
Q Consensus 314 i~~La~lV 321 (414)
.+.+..++
T Consensus 170 ~~~l~~~~ 177 (360)
T TIGR00539 170 KEELKLAK 177 (360)
T ss_pred HHHHHHHH
Confidence 44443333
No 113
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=36.83 E-value=32 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 015024 101 WHPFTEEAIEQIKRDGITKLVVLPL 125 (414)
Q Consensus 101 ~~P~i~e~l~~l~~~G~~~IivlPL 125 (414)
-+-.+.+.+++|++.|.+.|+++|+
T Consensus 48 ~~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 48 PEKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp ECCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3567899999999999999999997
No 114
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=34.84 E-value=60 Score=32.32 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 249 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 249 ~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
.+.+.++++++.+.|+|.++|+.=||- |+ ...+..+.++++|+.
T Consensus 73 a~~v~~~l~e~~~~Gvk~avIis~Gf~----e~---~~~~l~~~a~~~gir 116 (286)
T TIGR01019 73 APFAADAIFEAIDAGIELIVCITEGIP----VH---DMLKVKRYMEESGTR 116 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC----HH---HHHHHHHHHHHcCCE
Confidence 367899999999999999999999982 32 346678888888863
No 115
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=34.40 E-value=2.5e+02 Score=24.13 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCccccc
Q 015024 101 WHPFTEEAIEQIKRDGITKLVVLPLYPQFSIS 132 (414)
Q Consensus 101 ~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~ 132 (414)
.-|.+..+++-+...|+..++++=|||++|..
T Consensus 30 ~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~ 61 (136)
T PF07799_consen 30 DDPTIRRCINFARRWGYGGVIIVNLFPQRSTD 61 (136)
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEEecccccCC
Confidence 45777888888888999999999999998863
No 116
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.79 E-value=1.6e+02 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=40.7
Q ss_pred cHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCCCCCCHHHHHHHH
Q 015024 251 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPALGCEATFISDLA 318 (414)
Q Consensus 251 ~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~lNd~p~fi~~La 318 (414)
.+.+..+...+.|++.++++||.|..-+-| ++-.-+++++...+..-+.| .+-.+-+++.+..|+
T Consensus 82 ~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~---~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~ 147 (289)
T cd00951 82 TAIAYAQAAEKAGADGILLLPPYLTEAPQE---GLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLA 147 (289)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 334444455677999999999998754444 44445778877666654444 233455666655554
No 117
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.76 E-value=75 Score=33.21 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=44.2
Q ss_pred CCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHH
Q 015024 246 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEAT 312 (414)
Q Consensus 246 ~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~ 312 (414)
+|.+|+=.-.|+.+...|++.||..-.-+-.+-.=|+.+|. +.++..+++|.+ +..|++++-|+.
T Consensus 6 rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~-~~k~~ie~~GL~-~~vvEs~pv~e~ 70 (394)
T TIGR00695 6 RWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIR-KRKEYIESAGLH-WSVVESVPVHEA 70 (394)
T ss_pred eeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHH-HHHHHHHHcCCe-EEEEeCCCccHH
Confidence 58888766677777778999998653333233344455543 356666789985 888998888763
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.52 E-value=3.9e+02 Score=25.93 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHH-hccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHH
Q 015024 212 AEMEECVDLIMEE-LEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYK 290 (414)
Q Consensus 212 ~~~~~t~~~l~e~-l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~ 290 (414)
++|.++++.+++. ...+ -+.+.|-+=+ ..=-+++.++++++.|+..|++....+ +|. .++.
T Consensus 72 ~~~~~~v~~ir~~~~~~p----lv~m~Y~Npi-----~~~G~e~f~~~~~~aGvdgviipDlp~--------ee~-~~~~ 133 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIP----IGLLTYYNLI-----FRKGVEEFYAKCKEVGVDGVLVADLPL--------EES-GDLV 133 (256)
T ss_pred HHHHHHHHHHHhcCCCCC----EEEEEeccHH-----hhhhHHHHHHHHHHcCCCEEEECCCCh--------HHH-HHHH
Confidence 4566777777754 3221 1456665411 122567889999999998877764432 232 3477
Q ss_pred HHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 015024 291 ELALKSGIEKWGRVPALGCEATFISDLADAVI 322 (414)
Q Consensus 291 e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~ 322 (414)
+.++++|.. ...+=.++++++-++.+++...
T Consensus 134 ~~~~~~gl~-~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 134 EAAKKHGVK-PIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred HHHHHCCCc-EEEEECCCCCHHHHHHHHHhCC
Confidence 788899986 4444457777777777766543
No 119
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.95 E-value=86 Score=30.33 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=41.0
Q ss_pred CCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCH
Q 015024 245 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 311 (414)
Q Consensus 245 ~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p 311 (414)
.+.+.|.+- .++.|.+.|+|||.|+.| | ..+++...++.+.+.|++ ....-++|...
T Consensus 102 ~p~tt~~~A-~~~AL~alg~~RIalvTP-Y-------~~~v~~~~~~~l~~~G~e-V~~~~~~~~~~ 158 (239)
T TIGR02990 102 TPVVTPSSA-AVDGLAALGVRRISLLTP-Y-------TPETSRPMAQYFAVRGFE-IVNFTCLGLTD 158 (239)
T ss_pred CCeeCHHHH-HHHHHHHcCCCEEEEECC-C-------cHHHHHHHHHHHHhCCcE-EeeeeccCCCC
Confidence 444555444 777888889999999977 2 356667778888899985 66666677643
No 120
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=32.91 E-value=1.8e+02 Score=29.03 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=30.5
Q ss_pred hhccCCCceEEEee--ecCCCCHHHHHHHHHHcCCCEEEEEecCCcc
Q 015024 85 LWEKNLPAKVYVGM--RYWHPFTEEAIEQIKRDGITKLVVLPLYPQF 129 (414)
Q Consensus 85 L~~~~~~~~V~~am--ry~~P~i~e~l~~l~~~G~~~IivlPLyPqy 129 (414)
+.+.|..+.|.... +...-.+.+.++.+.+.|++.+.+.|.||..
T Consensus 158 l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 158 AKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 33445444333221 3445668888888889999999999999854
No 121
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=32.11 E-value=68 Score=32.01 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 249 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 249 ~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
.+.+.++++++.+.|+|.++|+.=||- +.+ ..+.++.+++.|+.
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~------~~~-~~~l~~~a~~~gir 118 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIP------VLD-MLEVKAYLERKKTR 118 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC------HHH-HHHHHHHHHHcCCE
Confidence 367899999999999999999999984 111 24678888888863
No 122
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.04 E-value=4.8e+02 Score=25.31 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEE-
Q 015024 160 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAY- 238 (414)
Q Consensus 160 ~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~laf- 238 (414)
+++|-+|.....+++.|.+.|.+.++ +.. ..+- ++..-|..++.+.-+.+.+.+..- ++.--++|
T Consensus 113 PH~Wldp~~~~~~a~~Ia~~L~~~dP-~~~----------~~y~-~N~~~~~~~L~~l~~~~~~~~~~~--~~~~~v~~H 178 (282)
T cd01017 113 PHVWLSPVLAIQQVENIKDALIKLDP-DNK----------EYYE-KNAAAYAKKLEALDQEYRAKLAKA--KGKTFVTQH 178 (282)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhCc-ccH----------HHHH-HHHHHHHHHHHHHHHHHHHHHhcc--CCCeEEEec
Confidence 57899999999999999999977642 210 0112 455668888888887777776421 11111121
Q ss_pred ---e---cCcCC--------CCCCCCcHHH---HHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeE
Q 015024 239 ---Q---SRVGP--------VEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 301 (414)
Q Consensus 239 ---Q---Sr~G~--------~~WL~P~t~d---~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~ 301 (414)
+ .++|- .+=-+|+..+ .++.+.+.|++ ++++-+.|-..-.|+ ++++.|.+ .
T Consensus 179 ~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~~----------la~~~g~~-v 246 (282)
T cd01017 179 AAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVK-YIFFEENASSKIAET----------LAKETGAK-L 246 (282)
T ss_pred ccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHH----------HHHHcCCc-E
Confidence 1 22221 1112455432 33334455654 666667776655544 45577875 5
Q ss_pred EEcCCCCC--------CHHHHHHHHHHH
Q 015024 302 GRVPALGC--------EATFISDLADAV 321 (414)
Q Consensus 302 ~~vp~lNd--------~p~fi~~La~lV 321 (414)
..+..+.. ...++++|.+.+
T Consensus 247 ~~ld~l~~~~~~~~~~~~~y~~~m~~n~ 274 (282)
T cd01017 247 LVLNPLETLTKEEIDDGKDYFSLMKENL 274 (282)
T ss_pred EEeccccccchhcccccCcHHHHHHHHH
Confidence 56555542 234666655544
No 123
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.92 E-value=80 Score=26.77 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
..+.+.++++.+.|++.|++.|= +.+.+..+.++++|+.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g-----------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG-----------AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT-----------S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc-----------hHHHHHHHHHHHcCCE
Confidence 36788999999999998888774 4455677888888874
No 124
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=31.46 E-value=2.2e+02 Score=31.70 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=35.6
Q ss_pred CCchhHHHHH-hccCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHH--HHHHHHH
Q 015024 52 VRAPKSKEGY-ASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIK 113 (414)
Q Consensus 52 ~R~~k~~~~Y-~~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~--e~l~~l~ 113 (414)
.|-..+.-+. ..++|.|||.+.-++||++|.+.|.+.. .+. ...-|+.|... ++.+-+.
T Consensus 425 iRHGeT~~n~~~r~~Gd~pLt~~G~~qA~~l~~~l~~~~-~~~--~~~V~sSpl~Ra~~TA~~i~ 486 (664)
T PTZ00322 425 TRAGEYVDLLSGRIGGNSRLTERGRAYSRALFEYFQKEI-STT--SFTVMSSCAKRCTETVHYFA 486 (664)
T ss_pred EecccchhhhcCccCCCCccCHHHHHHHHHHHHHHHhcc-CCC--CcEEEcCCcHHHHHHHHHHH
Confidence 3444433333 3456789999999999999999997421 010 11235777754 4444443
No 125
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=30.99 E-value=1.1e+02 Score=27.38 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHH--------HHHHHHcCCCEEEEEec
Q 015024 72 RITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEA--------IEQIKRDGITKLVVLPL 125 (414)
Q Consensus 72 ~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~--------l~~l~~~G~~~IivlPL 125 (414)
+.++..+..+++.+. +.+..+.+|.|..-.-.+. .+++++.|.++|+++.-
T Consensus 35 E~~~~l~~~lErqfK---GRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~ 93 (142)
T PF10673_consen 35 EFLRLLADELERQFK---GRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTS 93 (142)
T ss_pred HHHHHHHHHHHHhcC---ceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 345566677777775 3577788888876654443 34778889999998754
No 126
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=30.41 E-value=4e+02 Score=23.83 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=53.5
Q ss_pred ecCCCCHH--HHHHHHHHcCCCEEEEEecCCccc-----ccchHHHHHHHHHHHHhccccCCcceEEe--CCCCCChHHH
Q 015024 99 RYWHPFTE--EAIEQIKRDGITKLVVLPLYPQFS-----ISTSGSSLRLLESIFREDEYLVNMQHTVI--PSWYQREGYI 169 (414)
Q Consensus 99 ry~~P~i~--e~l~~l~~~G~~~IivlPLyPqyS-----~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i--~~~~~~p~yI 169 (414)
+|.+|-.. ..+++..+. +++++++|-.-+.+ .+|.+.=++.+.++++. .+.+.+..+ +....+|.--
T Consensus 7 ~F~P~H~GHl~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~---~~~~~v~~~~~~d~~~~~~~w 82 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD---QENIVVHTLNEPDIPEYPNGW 82 (158)
T ss_pred ccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC---CCCEEEEeCCCCCCCCCchhH
Confidence 55566553 556666554 79999999764433 34555545555555532 233333333 3444455567
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeecCC
Q 015024 170 TAMANLIEKELQNFDSPEQVMIFFSAHGV 198 (414)
Q Consensus 170 ~a~a~~I~~~l~~~~~~~~~~LlfSaHgi 198 (414)
+.|+..|+..+..... .+..++||.|-.
T Consensus 83 ~~w~~~v~~~v~~~~~-~~~~~vf~~~~~ 110 (158)
T cd02167 83 DIWSNRVKTLIAENTR-CRPDIVFTAEEY 110 (158)
T ss_pred HHHHHHHHHHHhhhcC-CCCCEEEEccCc
Confidence 7788889888864311 122367766543
No 127
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.18 E-value=6e+02 Score=25.81 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCC
Q 015024 166 EGYITAMANLIEKELQNFD-SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP 244 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~-~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~ 244 (414)
..|++++.+-|+...+..+ ......-|+-.-|.|.-. =..++.+..+.+.+..+... +++++.-++-.
T Consensus 36 ~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l-------~~~~l~~ll~~i~~~~~~~~---~~e~t~e~~p~- 104 (375)
T PRK05628 36 DGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLL-------GAEGLARVLDAVRDTFGLAP---GAEVTTEANPE- 104 (375)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccC-------CHHHHHHHHHHHHHhCCCCC---CCEEEEEeCCC-
Confidence 5577777777765443321 111122333233333211 03566666666666554321 23444444311
Q ss_pred CCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhH-----HHHHHHHHHHHHhcCCe
Q 015024 245 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL-----EEIDVEYKELALKSGIE 299 (414)
Q Consensus 245 ~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl-----~Eid~e~~e~a~~~G~~ 299 (414)
--+++.|+.|.+.|+++|-+=.=+|-.+.++.+ .+--.+.-+.+.++|+.
T Consensus 105 -----~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 105 -----STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred -----CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 124566777777777766665555665555544 12223344455566654
No 128
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.10 E-value=5.4e+02 Score=25.22 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=73.6
Q ss_pred CceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCCCCCCh
Q 015024 91 PAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQRE 166 (414)
Q Consensus 91 ~~~V~~amry~~P----~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p 166 (414)
+.++ +-|.|.+| .++.-++++++.|++-+++-=| |. .. .+++.+.+++. ++....+=.-...+
T Consensus 91 ~~p~-vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL-P~------ee-~~~~~~~~~~~----gi~~I~lv~PtT~~ 157 (263)
T CHL00200 91 KAPI-VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL-PY------EE-SDYLISVCNLY----NIELILLIAPTSSK 157 (263)
T ss_pred CCCE-EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCC-CH------HH-HHHHHHHHHHc----CCCEEEEECCCCCH
Confidence 4554 37999999 5667788899999998776555 42 11 12333344333 22222322333344
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCC
Q 015024 167 GYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVE 246 (414)
Q Consensus 167 ~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~ 246 (414)
.-++.+++.. +...++.|--|+ - ...+....++.+..+.+++..+. |+.++| |
T Consensus 158 eri~~i~~~a----------~gFIY~vS~~Gv----T-G~~~~~~~~~~~~i~~ir~~t~~-----Pi~vGF----G--- 210 (263)
T CHL00200 158 SRIQKIARAA----------PGCIYLVSTTGV----T-GLKTELDKKLKKLIETIKKMTNK-----PIILGF----G--- 210 (263)
T ss_pred HHHHHHHHhC----------CCcEEEEcCCCC----C-CCCccccHHHHHHHHHHHHhcCC-----CEEEEC----C---
Confidence 4444443321 223455565554 1 11134567777778888875432 356655 3
Q ss_pred CCCCcHHHHHHHHhhcCCceEEE
Q 015024 247 WLKPYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 247 WL~P~t~d~L~~L~~~G~k~VvV 269 (414)
=++.+..+++.+.|..-|+|
T Consensus 211 ---I~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 211 ---ISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred ---cCCHHHHHHHHhcCCCEEEE
Confidence 34445666666666555544
No 129
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.88 E-value=79 Score=31.83 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 015024 81 LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLY 126 (414)
Q Consensus 81 L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLy 126 (414)
+.+.+.+.|.+..|. +=.=.+|++++-++.+.+-+.+++++||==
T Consensus 108 ~~~lf~~~Gv~~vi~-ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 108 LAELFRSLGVDVVIS-GGQTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred HHHHHHhCCCeEEEe-CCCCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 444444434332222 223358899988888888888999998863
No 130
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=29.80 E-value=13 Score=34.53 Aligned_cols=59 Identities=29% Similarity=0.547 Sum_probs=44.7
Q ss_pred ceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHH
Q 015024 155 QHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECV 218 (414)
Q Consensus 155 ~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~ 218 (414)
-+..+..|.+++..++.++..+++.+..+. ++.=++-..|+|..-. +.|||..++.+.+
T Consensus 37 A~~L~~rY~~~~~Lv~~m~~LarEEL~HFe---qV~~im~~Rgi~l~~~--~~~~Ya~~L~k~v 95 (180)
T cd07910 37 AMSLIFRYPEKPELVEAMSDLAREELQHFE---QVLKIMKKRGIPLGPD--SKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence 356788999999999999999999887652 2223456778887764 5789988876554
No 131
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.62 E-value=1.8e+02 Score=29.05 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=42.4
Q ss_pred CcHHHHHH---HHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhc-CCeeEEE-cCCC---CCCHHHHHHHH
Q 015024 250 PYTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKS-GIEKWGR-VPAL---GCEATFISDLA 318 (414)
Q Consensus 250 P~t~d~L~---~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~-G~~~~~~-vp~l---Nd~p~fi~~La 318 (414)
.+|+++++ ...+.|+..|+|+||.|..-.- .+|-.-+++++... +..-+.| +|.. +-+++.+.-|+
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~---~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPLDV---DTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCH---HHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 45555555 4456699999999998766543 45555578888777 4554555 5543 55666655554
No 132
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.35 E-value=2.8e+02 Score=27.28 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=35.0
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 91 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 91 ~~~V~~amry~~P~i~e~l~~l---~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
.++|..+- +.++++++++.. .+.|++-++++| |.|...|-....+.+.+..+
T Consensus 73 ~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~ 127 (293)
T PRK04147 73 KVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIID 127 (293)
T ss_pred CCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHH
Confidence 45566544 567889888754 457999999998 66766655555555555554
No 133
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=29.11 E-value=1.3e+02 Score=31.71 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
..+.+.++++.+.|+|.++++.=||....-| =.++..+..+.++++|+.
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCE
Confidence 5678899999999999999999888764433 234566788888888874
No 134
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.08 E-value=5.3e+02 Score=24.83 Aligned_cols=136 Identities=22% Similarity=0.216 Sum_probs=78.2
Q ss_pred eCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEE
Q 015024 159 IPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAY 238 (414)
Q Consensus 159 i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~laf 238 (414)
=+++|-+|.....+++.|.+.|.+.++... ..+- ++...|..++.+.-+.+++.+.... +..-+++
T Consensus 111 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~-----------~~y~-~N~~~~~~~L~~l~~~~~~~~~~~~--~~~~v~~ 176 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYEALAELDPQNA-----------TYYQ-ANLDALLAELDALDSEIRTILSKLK--QRAFMVY 176 (266)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHHhCcccH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEE
Confidence 367999999999999999999987642111 0112 4556688888888877777764211 1111111
Q ss_pred e-------cCcCC------CCCCCC---cHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEE
Q 015024 239 Q-------SRVGP------VEWLKP---YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 302 (414)
Q Consensus 239 Q-------Sr~G~------~~WL~P---~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~ 302 (414)
- -++|- .+=-+| .+.+.++.+.+.|++ ++++-+.|-..-.+ .++++.|.+ ..
T Consensus 177 H~af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~----------~la~~~g~~-v~ 244 (266)
T cd01018 177 HPAWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEKGVR-VVFVQPQFSTKSAE----------AIAREIGAK-VV 244 (266)
T ss_pred CchhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCcHHHH----------HHHHHcCCe-EE
Confidence 0 11120 011235 334444455556765 55556666655444 445578875 55
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q 015024 303 RVPALGCEATFISDLADAVI 322 (414)
Q Consensus 303 ~vp~lNd~p~fi~~La~lV~ 322 (414)
.+..++ ..++++|...+.
T Consensus 245 ~ld~~~--~~y~~~m~~n~~ 262 (266)
T cd01018 245 TIDPLA--ADWEENLLKVAD 262 (266)
T ss_pred EeCCcH--HHHHHHHHHHHH
Confidence 555554 457777766654
No 135
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=28.85 E-value=1.2e+02 Score=31.42 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=41.0
Q ss_pred CcHHHHHHHHhhcCCceEEEE-cccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 250 PYTDETIIKLGQKGVKSLLAV-PISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVv-P~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
|.|.++|--...-|+++++|+ .=.-..|.-|+++-.++|.||+..+.|..
T Consensus 156 PQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 156 PQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred cchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 899999865445599998875 55577888899999999999999998864
No 136
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.84 E-value=2.8e+02 Score=27.36 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHHcCCCE
Q 015024 102 HPFTEEAIEQIKRDGITK 119 (414)
Q Consensus 102 ~P~i~e~l~~l~~~G~~~ 119 (414)
.+.+...++++++.|.+-
T Consensus 179 ~~d~s~~i~~i~~~~~d~ 196 (347)
T cd06335 179 DKDMTAQLLRAKAAGADA 196 (347)
T ss_pred CccHHHHHHHHHhCCCCE
Confidence 334444444444444443
No 137
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.51 E-value=1.1e+02 Score=30.29 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHhccccCCC-CEEEEEecCcCCCCCCC---CcHHHHHHHHhhcCCceEEEEcccccccc
Q 015024 209 PYKAEMEECVDLIMEELEKRKITN-AYTLAYQSRVGPVEWLK---PYTDETIIKLGQKGVKSLLAVPISFVSEH 278 (414)
Q Consensus 209 pY~~~~~~t~~~l~e~l~~~~~~~-~~~lafQSr~G~~~WL~---P~t~d~L~~L~~~G~k~VvVvP~gFvsD~ 278 (414)
.=++++.++++.+++. +++ .+. -....||...|.-.|=. |+..+.+++|.++|+|=++.+-|.+..|+
T Consensus 27 ~s~~~v~~~~~~~~~~-~iP-~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s 98 (303)
T cd06592 27 INQETVLNYAQEIIDN-GFP-NGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS 98 (303)
T ss_pred cCHHHHHHHHHHHHHc-CCC-CCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC
Confidence 3455566666555543 222 100 01235676655322321 89999999999999998888988766554
No 138
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.48 E-value=3e+02 Score=26.04 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.3
Q ss_pred HHHHHHhcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 015024 289 YKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 289 ~~e~a~~~G~~---~~~~vp~lNd~p~fi~~La~lV~~ 323 (414)
.-+...+.|.. +...||-+||+++-++.+++.+.+
T Consensus 119 nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 119 NLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444567764 345588899999999999999976
No 139
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=28.46 E-value=3.2e+02 Score=23.63 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=38.5
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCC--CHHHHHHHHHHHH
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC--EATFISDLADAVI 322 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd--~p~fi~~La~lV~ 322 (414)
|+-+ -++.|++.|+|.|+=.=+-.=.+.--. ....++.+...|.. |+++|.... ++.-++.+.+++.
T Consensus 15 lt~~-d~~~L~~~GiktVIdlR~~~E~~~~p~----~~~~~~~a~~~gl~-y~~iPv~~~~~~~~~v~~f~~~~~ 83 (135)
T TIGR01244 15 LTKA-DAAQAAQLGFKTVINNRPDREEESQPD----FAQIKAAAEAAGVT-YHHQPVTAGDITPDDVETFRAAIG 83 (135)
T ss_pred CCHH-HHHHHHHCCCcEEEECCCCCCCCCCCC----HHHHHHHHHHCCCe-EEEeecCCCCCCHHHHHHHHHHHH
Confidence 4333 467788899988875432111111110 11125666778885 889986655 4556667776665
No 140
>PRK06740 histidinol-phosphatase; Validated
Probab=28.43 E-value=6.3e+02 Score=25.51 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=37.4
Q ss_pred CchhHHHHHhccCCCCCchHHHHHHHHHHHHHhhcc---CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 015024 53 RAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEK---NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVV 122 (414)
Q Consensus 53 R~~k~~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~---~~~~~V~~amry~~P~i~e~l~~l~~~G~~~Iiv 122 (414)
|...+.+.|+.+.+- .+|.+++...+++|+++ |+ |+.-.+++-+++..+.|++.+-+
T Consensus 21 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~e~yv~~Ai~~G~~~ig~ 80 (331)
T PRK06740 21 KINEALQHYEPLKEA----KHSMEWLVKTQERLQRRVKEGP---------YTTKWIDLYLEEALRKGIKEVGI 80 (331)
T ss_pred HhhhhhhccCccccc----cchHHHHHHHHHHHHHHHhcCC---------CccchHHHHHHHHHHCCCcEEEE
Confidence 445566666665432 44566555555555542 32 47778999999999999988765
No 141
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.35 E-value=2.1e+02 Score=28.06 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=44.2
Q ss_pred CCcHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 015024 249 KPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 319 (414)
Q Consensus 249 ~P~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~---lNd~p~fi~~La~ 319 (414)
.++|+++++. ..+.|+..|+++||.|..-.-+ ++-.-+++++...+..-+.| +|. .+-+++++..|++
T Consensus 82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~---~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFE---EICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHH---HHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 3677777664 4567999999999998775444 55445778887766654444 443 3456666665553
No 142
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.04 E-value=2.3e+02 Score=27.97 Aligned_cols=62 Identities=21% Similarity=0.146 Sum_probs=40.2
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 321 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV 321 (414)
--.++-++++++.|++.++|...- .|...+..+.++++|+. +..+-++|.+++.++.+++.-
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP---------~ee~~~~~~~~~~~gi~-~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLP---------PEESDELLKAAEKHGID-PIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCC---------hHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHhC
Confidence 345556777777788777775432 23344566777778875 556666888877777766644
No 143
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=27.98 E-value=5.8e+02 Score=24.93 Aligned_cols=203 Identities=19% Similarity=0.245 Sum_probs=115.0
Q ss_pred CchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCC----EEEEEecCCcccccchHHHHHHHHHH
Q 015024 69 PLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGIT----KLVVLPLYPQFSISTSGSSLRLLESI 144 (414)
Q Consensus 69 PL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~----~IivlPLyPqyS~~Ttgs~~~~~~e~ 144 (414)
|....+..--+.|++.|+. .+=|.|.-+..|..-+++++...+.-+ .....+.| |.|-+-.. .
T Consensus 34 P~l~f~f~~l~~lr~kL~~----p~kY~giIfTSpR~VEa~~eaL~q~~tel~~~w~a~~vY------tVG~aT~~---s 100 (260)
T KOG4132|consen 34 PVLSFTFVNLQQLRAKLNN----PPKYAGIIFTSPRCVEALNEALIQTETELKAAWLAKHVY------TVGPATHA---S 100 (260)
T ss_pred cceeeeeccHHHHHHHhcC----chhhceeEEeChHHHHHHHHHhccccchhhhHHhhccee------eeccccHH---H
Confidence 4455555544567777763 223778889999999999887652211 11122222 22221110 1
Q ss_pred HHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHH
Q 015024 145 FREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEE 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~ 224 (414)
+. +.-+++--++|-+=-+.+++.|.+.. ......-||| |.--. ..+.|.++
T Consensus 101 i~--------~~~~l~T~Ge~~gNa~~LaD~Ive~~---~~~~alPLLf-----pcGn~-------------~rdil~kk 151 (260)
T KOG4132|consen 101 IR--------RLGFLNTHGEDAGNAEILADLIVETF---TDKRALPLLF-----PCGNL-------------RRDILPKK 151 (260)
T ss_pred HH--------HhcCccccccccccHHHHhHhhhhcC---CCcccCceEE-----Ecccc-------------hhHHHHHH
Confidence 11 11233344566666778888887642 1112223777 32211 12234456
Q ss_pred hccccCCCCEEEEEecCcCCCCCCCCcHHHHHHH-HhhcC-CceEEEEcccccccchhhHHHHHHH------------HH
Q 015024 225 LEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK-LGQKG-VKSLLAVPISFVSEHIETLEEIDVE------------YK 290 (414)
Q Consensus 225 l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~-L~~~G-~k~VvVvP~gFvsD~lETl~Eid~e------------~~ 290 (414)
|...+++-+-..+|+++- -|++..-++. +...| ..-|+++.|+=+.-.++++.+...- .+
T Consensus 152 L~~~G~~Vds~~VY~T~~------hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~ 225 (260)
T KOG4132|consen 152 LHDKGIRVDSCEVYETRE------HPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTR 225 (260)
T ss_pred HHhCCceeeEEEEEeeee------cccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchH
Confidence 655444433468899986 3666655554 33444 3578889999888888888775433 45
Q ss_pred HHHHhcCCeeEEEcCCCCCCHHHHHHHHHHHHHh
Q 015024 291 ELALKSGIEKWGRVPALGCEATFISDLADAVIES 324 (414)
Q Consensus 291 e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV~~~ 324 (414)
+..++.|.+....+|.++ .+.|++.|...
T Consensus 226 kaL~~~g~~~~~vs~~P~-----pe~L~~~I~~~ 254 (260)
T KOG4132|consen 226 KALEDLGVKVDVVSPAPD-----PESLADAIELY 254 (260)
T ss_pred HHHHHcCCCcceecCCCC-----HHHHHHHHHhh
Confidence 666788988777777765 34566666543
No 144
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.76 E-value=2.4e+02 Score=27.81 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=42.9
Q ss_pred cHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEc-CCCCCCHHHHHHHHH
Q 015024 251 YTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRV-PALGCEATFISDLAD 319 (414)
Q Consensus 251 ~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~v-p~lNd~p~fi~~La~ 319 (414)
+|.++++. ..+.|++.++++||.|..-.- .+|-.-+++++...+..-+.|- +-.+-+++.+..|++
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~---~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQ---EGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH---HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 46666654 455799999999999876443 4555567888876665544443 334557776666654
No 145
>PRK12677 xylose isomerase; Provisional
Probab=27.63 E-value=2.2e+02 Score=29.48 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=41.7
Q ss_pred EEEEEecC--cCC--CCCCCCcHHHHHHHHhhcCCceEEEEc---ccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 234 YTLAYQSR--VGP--VEWLKPYTDETIIKLGQKGVKSLLAVP---ISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 234 ~~lafQSr--~G~--~~WL~P~t~d~L~~L~~~G~k~VvVvP---~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
|.++||+| ||. .+++ +.++.++.+++.|++.|-+.. .-|-.+..|. ...-.+.++..++.|++
T Consensus 13 w~~~~~~~~~~g~~~~~~~--~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~-~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 13 WTVGWQGRDPFGDATRPPL--DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAER-DRIIKRFKKALDETGLV 82 (384)
T ss_pred eeccCCCCCCCCCCCCCCC--CHHHHHHHHHHhCCCEEEecccccCCCCCChhhh-HHHHHHHHHHHHHcCCe
Confidence 89999988 443 2332 678999999999999887753 2233333321 11233477788889986
No 146
>PLN02727 NAD kinase
Probab=27.44 E-value=2.4e+02 Score=32.93 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=56.1
Q ss_pred CEEEEEecCcCC---CC------CCCCc-HHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEE
Q 015024 233 AYTLAYQSRVGP---VE------WLKPY-TDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 302 (414)
Q Consensus 233 ~~~lafQSr~G~---~~------WL~P~-t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~ 302 (414)
+|...|-|.++- .. |-.+. +.+.+++++++|+|.|+=.-+---.|.. + .-+.++.++++|++ |+
T Consensus 241 n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~---~--~~ee~eAae~~GL~-yV 314 (986)
T PLN02727 241 NWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNF---Y--QAAVDDAISSGKIE-VV 314 (986)
T ss_pred ccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCc---h--hHHHHHHHHHcCCe-EE
Confidence 377778777641 12 54432 3445799999999999887653322222 1 22356777788885 88
Q ss_pred EcCCCC-C--CHHHHHHHHHHHHHhC
Q 015024 303 RVPALG-C--EATFISDLADAVIESL 325 (414)
Q Consensus 303 ~vp~lN-d--~p~fi~~La~lV~~~l 325 (414)
.+|.-. . +++-++.+++++.+.+
T Consensus 315 hIPVs~~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 315 KIPVEVRTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred EeecCCCCCCCHHHHHHHHHHHHhhc
Confidence 998522 2 6689999999995533
No 147
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.76 E-value=4.9e+02 Score=25.60 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe----eEEEcCCCCCCHHHHHHHHHHHHHh
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE----KWGRVPALGCEATFISDLADAVIES 324 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~----~~~~vp~lNd~p~fi~~La~lV~~~ 324 (414)
|+-.+.+++|.++|+|=++.+-|..-.|+-+..|+ +.+++.|.. ....+.+ .+|++.+..-+.+.+.
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~D~--tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP------EMAKALGVDPATEGPILFDL--TNPKFMDAYFDNVHRP 144 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH------HHHHhcCCCcccCCeEEecC--CCHHHHHHHHHHHHHH
Confidence 89999999999999998888888765555443343 233333332 1223333 4677777665555443
No 148
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=26.70 E-value=2.5e+02 Score=25.06 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=22.9
Q ss_pred hhcCCceEEEEcccccccchhh---HHHHHHHHHHHHHhcCCeeEEEcC
Q 015024 260 GQKGVKSLLAVPISFVSEHIET---LEEIDVEYKELALKSGIEKWGRVP 305 (414)
Q Consensus 260 ~~~G~k~VvVvP~gFvsD~lET---l~Eid~e~~e~a~~~G~~~~~~vp 305 (414)
.+-|.++|++.|++=.|+.+.. -.++=.+..+...+.|.+ ..|+|
T Consensus 68 ~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~e-V~raP 115 (138)
T PF08915_consen 68 KKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFE-VYRAP 115 (138)
T ss_dssp HHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-E-EEE--
T ss_pred HhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCe-EEEeC
Confidence 4458889999999988887641 222222233333466764 66666
No 149
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.66 E-value=99 Score=27.79 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=35.0
Q ss_pred EEcccccccchhhHHHHHHHHHHHHHhcCCeeEE-EcCCCCCCHHHHHHHHHHHHH
Q 015024 269 AVPISFVSEHIETLEEIDVEYKELALKSGIEKWG-RVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 269 VvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~-~vp~lNd~p~fi~~La~lV~~ 323 (414)
|+-..|.+|.- +.|-..|.+.+. +.|...|. ....||-||.|+.+++.+-..
T Consensus 102 ii~~~f~sdee--v~ey~~ei~~l~-e~g~ts~~~vt~~Ln~~p~~iraiakRS~~ 154 (170)
T COG4860 102 IIYAAFLSDEE--VKEYEDEIKALM-EEGNTSFLDVTDTLNISPTLIRAIAKRSSI 154 (170)
T ss_pred HHHHHhCCHHH--HHHHHHHHHHHH-HcCCceEeehhhhcCCChHHHHHHHHHhhh
Confidence 34446777743 556556666655 55555554 457999999999999987643
No 150
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.62 E-value=7.1e+02 Score=25.48 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 015024 166 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 245 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~ 245 (414)
..|++++.+.|+....... ...+.-|+-.-|.|.-. =..++.+..+.+.+.++... ..+++.-++-+
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~-~~~v~ti~~GGGtPs~l-------~~~~l~~ll~~l~~~~~~~~---~~eit~e~np~-- 103 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQ-GREVHSIFIGGGTPSLF-------SAEAIQRLLDGVRARLPFAP---DAEITMEANPG-- 103 (378)
T ss_pred HHHHHHHHHHHHHHhHhcc-CCceeEEEeCCCccccC-------CHHHHHHHHHHHHHhCCCCC---CcEEEEEeCcC--
Confidence 4599999998876443221 12233444333444221 15778888888888775431 24666666422
Q ss_pred CCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhH-----HHHHHHHHHHHHhcCCe
Q 015024 246 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL-----EEIDVEYKELALKSGIE 299 (414)
Q Consensus 246 ~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl-----~Eid~e~~e~a~~~G~~ 299 (414)
--+.+.|+.|.+.|+.+|-+=.=+|-.+.+..+ .+--.+.-+.++++|+.
T Consensus 104 ----~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 104 ----TVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred ----cCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 234578888888898888776667776666544 22233445666788875
No 151
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=26.52 E-value=85 Score=28.52 Aligned_cols=74 Identities=14% Similarity=0.305 Sum_probs=41.4
Q ss_pred EEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCCh
Q 015024 120 LVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVP 199 (414)
Q Consensus 120 IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP 199 (414)
++++|=| ..+...+=+..+++.+... .. ...+.| ++|.+ +.|.+.+++++...+. . .+|.+||+
T Consensus 1 v~IvhG~---~~s~~~HW~~wl~~~l~~~-----~~-V~~~~~-~~P~~-~~W~~~l~~~i~~~~~--~--~ilVaHSL- 64 (171)
T PF06821_consen 1 VLIVHGY---GGSPPDHWQPWLERQLENS-----VR-VEQPDW-DNPDL-DEWVQALDQAIDAIDE--P--TILVAHSL- 64 (171)
T ss_dssp EEEE--T---TSSTTTSTHHHHHHHHTTS-----EE-EEEC---TS--H-HHHHHHHHHCCHC-TT--T--EEEEEETH-
T ss_pred CEEeCCC---CCCCccHHHHHHHHhCCCC-----eE-Eecccc-CCCCH-HHHHHHHHHHHhhcCC--C--eEEEEeCH-
Confidence 3555554 4444555555555555322 11 224445 78866 6788889888875532 2 78899999
Q ss_pred hhhhcccCCchHHHHHHHHHHHH
Q 015024 200 LAYVEEAGDPYKAEMEECVDLIM 222 (414)
Q Consensus 200 ~~~i~~~GDpY~~~~~~t~~~l~ 222 (414)
| |..+.+.++
T Consensus 65 -------G------c~~~l~~l~ 74 (171)
T PF06821_consen 65 -------G------CLTALRWLA 74 (171)
T ss_dssp -------H------HHHHHHHHH
T ss_pred -------H------HHHHHHHHh
Confidence 3 677777776
No 152
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=26.26 E-value=3.6e+02 Score=26.02 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=34.4
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 91 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 91 ~~~V~~amry~~P~i~e~l~~l---~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
+++|..+- +.++.+++++.. .+.|++-++++| |.|...+.....+.+.+..+
T Consensus 66 ~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 66 RVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 56666554 667888888854 456999999977 55666555555555555544
No 153
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=25.34 E-value=3.5e+02 Score=26.83 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 90 LPAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 90 ~~~~V~~amry~~P~i~e~l~~l~---~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
..++|..+- +. ++.++++..+ +.|++.++++| |.|...+.....+.+.+..+
T Consensus 75 ~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 75 GRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred CCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 356777766 44 8888888654 46999998877 55665554444444444443
No 154
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.15 E-value=4.2e+02 Score=25.75 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 90 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 90 ~~~~V~~amry~~P~i~e~l~~l---~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
.+++|..+ -+..+++++++.. ++.|++-+.++| |.|...|.....+.+.+..+
T Consensus 69 ~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 69 GRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred CceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 35666665 4566899888866 457999998886 55666666555555555543
No 155
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=25.01 E-value=1.5e+02 Score=30.08 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=32.7
Q ss_pred cCCCCCch---HHHHHHHHHHHHHhhccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEE
Q 015024 64 IGGGSPLR---RITDAQAEELRKSLWEKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLV 121 (414)
Q Consensus 64 IgggSPL~---~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P--~i~e~l~~l~~~G~~~Ii 121 (414)
+|||.|.. ..-.+..+.+++.+.- ..+ .++.+. .+| .-++.++.|++.|+++|-
T Consensus 57 ~GGGtPs~l~~~~l~~ll~~i~~~~~~-~~~--~eitie-~np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 57 IGGGTPNTLSVEAFERLFESIYQHASL-SDD--CEITTE-ANPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred eCCCchhcCCHHHHHHHHHHHHHhCCC-CCC--CEEEEE-eCCCCCCHHHHHHHHHcCCCEEE
Confidence 49999975 4445555566555531 111 233332 244 456889999999999774
No 156
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=24.96 E-value=3e+02 Score=24.25 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=32.4
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHH--HHHHHHHH-cCCCEEEEEe
Q 015024 67 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIKR-DGITKLVVLP 124 (414)
Q Consensus 67 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~--e~l~~l~~-~G~~~IivlP 124 (414)
.+||....++||+.+.+.|.....+ .-|+.|... ++.+.+.+ .|+. +.+.|
T Consensus 21 d~~Lt~~G~~qa~~l~~~l~~~~~~------~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~ 74 (177)
T TIGR03162 21 DVPLAEKGAEQAAALREKLADVPFD------AVYSSPLSRCRELAEILAERRGLP-IIKDP 74 (177)
T ss_pred CCCcChhHHHHHHHHHHHhcCCCCC------EEEECchHHHHHHHHHHHhhcCCC-ceECC
Confidence 4899999999999999999632211 235677765 44444543 2433 44444
No 157
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.67 E-value=5.2e+02 Score=25.15 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhc
Q 015024 160 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE 226 (414)
Q Consensus 160 ~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~ 226 (414)
+++|-+|.....+++.|.+.|.+.++... .+.+++.+-|..++.+.-+.+.+++.
T Consensus 101 PH~Wldp~~~~~~a~~I~~~L~~~dP~~~------------~~y~~N~~~~~~~L~~l~~~~~~~l~ 155 (276)
T cd01016 101 PHIWFDVKLWKYAVKAVAEVLSEKLPEHK------------DEFQANSEAYVEELDSLDAYAKKKIA 155 (276)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999987642111 01114455677777777777777664
No 158
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=24.51 E-value=79 Score=26.42 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 015024 101 WHPFTEEAIEQIKRDGITKLVVLPL 125 (414)
Q Consensus 101 ~~P~i~e~l~~l~~~G~~~IivlPL 125 (414)
-+..+.+.+++|++.|.+.|+++|+
T Consensus 72 ~~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 72 DEKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEech
Confidence 4566889999999999999999997
No 159
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.48 E-value=3.1e+02 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=40.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhccccCCCCE-EEEEecCcCCCCCCC-CcHHHHHHHHhhcCCceEEE
Q 015024 205 EAGDPYKAEMEECVDLIMEELEKRKITNAY-TLAYQSRVGPVEWLK-PYTDETIIKLGQKGVKSLLA 269 (414)
Q Consensus 205 ~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~-~lafQSr~G~~~WL~-P~t~d~L~~L~~~G~k~VvV 269 (414)
+..-||..++-+++-.+++..|++-.+ + +-.|+.. +..|+. .+++|..+-+.+.| ++|.+
T Consensus 72 DATHPyAa~iS~Na~~aake~gipy~r--~eRP~~~~~--gd~~~~V~d~~ea~~~~~~~~-~rVfl 133 (257)
T COG2099 72 DATHPYAARISQNAARAAKETGIPYLR--LERPPWAPN--GDNWIEVADIEEAAEAAKQLG-RRVFL 133 (257)
T ss_pred ECCChHHHHHHHHHHHHHHHhCCcEEE--EECCccccC--CCceEEecCHHHHHHHHhccC-CcEEE
Confidence 667799999999999999999864100 0 1223332 366766 77888877766655 55544
No 160
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.32 E-value=62 Score=21.17 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=17.1
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEE
Q 015024 99 RYWHPFTEEAIEQIKRDGITKLV 121 (414)
Q Consensus 99 ry~~P~i~e~l~~l~~~G~~~Ii 121 (414)
+||.|.-.+..+++.+.|++.|.
T Consensus 3 ~~WT~d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 3 YFWTPDKPASWRELLDLGVDGIM 25 (30)
T ss_dssp EEET--SHHHHHHHHHHT-SEEE
T ss_pred EEecCCCHHHHHHHHHcCCCEee
Confidence 56788889999999999999874
No 161
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=23.92 E-value=7.4e+02 Score=24.78 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=60.8
Q ss_pred ccCCchH---HHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhh
Q 015024 205 EAGDPYK---AEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIET 281 (414)
Q Consensus 205 ~~GDpY~---~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lET 281 (414)
..|||.. ..+.+..+.+.+ ++ .. -.+.+-||.- .-|-.=-+++.++.|.+.| +.+. +.+-+ .|-+-
T Consensus 143 SGGDPl~~~~~~L~~ll~~l~~-i~--~v---~~iri~Tr~~-v~~p~rit~ell~~L~~~g-~~v~-i~l~~--~h~~e 211 (321)
T TIGR03822 143 TGGDPLVLSPRRLGDIMARLAA-ID--HV---KIVRFHTRVP-VADPARVTPALIAALKTSG-KTVY-VALHA--NHARE 211 (321)
T ss_pred eCCCcccCCHHHHHHHHHHHHh-CC--Cc---cEEEEeCCCc-ccChhhcCHHHHHHHHHcC-CcEE-EEecC--CChhh
Confidence 4488853 566666666655 22 11 1355557642 2221113578888888888 3433 32222 23332
Q ss_pred HHHHHHHHHHHHHhcCCee---EEEcCCCCCCHHHHHHHHHHHHH
Q 015024 282 LEEIDVEYKELALKSGIEK---WGRVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 282 l~Eid~e~~e~a~~~G~~~---~~~vp~lNd~p~fi~~La~lV~~ 323 (414)
+.+--.+.-+.+.++|+.- ++.+.-.||+.+-++.|.+.+.+
T Consensus 212 l~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 212 LTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVE 256 (321)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHh
Confidence 3344445556667889853 45566678998877777666654
No 162
>PRK05367 glycine dehydrogenase; Provisional
Probab=23.69 E-value=84 Score=36.64 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred cHHHHHHHHhhcCCceEEEE--cccccccchhhHHHHHHHHHHHHHhcCCe------------------eEEEcCCCCCC
Q 015024 251 YTDETIIKLGQKGVKSLLAV--PISFVSEHIETLEEIDVEYKELALKSGIE------------------KWGRVPALGCE 310 (414)
Q Consensus 251 ~t~d~L~~L~~~G~k~VvVv--P~gFvsD~lETl~Eid~e~~e~a~~~G~~------------------~~~~vp~lNd~ 310 (414)
+..++.++|.++|+--=.+. .+.+..|..+|..|||.-...+... +.. .+.|-..+..+
T Consensus 393 ~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 471 (954)
T PRK05367 393 DAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFGGA-ALDVDALDADVADASASALPAALLRTSAYLTH 471 (954)
T ss_pred CHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHccc-ccchhhhhhhhcccccccCCHHHhcCCcccCC
Confidence 67889999999885221111 2557777888888888776655310 000 01111112222
Q ss_pred HHHHHHHHH-HHHHhCCCCCcccccchhhhhccccCcchhhhhhcchhhccCCCCCCcccccCCcch-h-hhhhhHHHHH
Q 015024 311 ATFISDLAD-AVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRS-A-ETWNGRAAML 387 (414)
Q Consensus 311 p~fi~~La~-lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~-E~~ngR~Am~ 387 (414)
|-|-....+ -+.+++ +..+..+........|+|+|-..+ ++.-....-..+. +.++++. + |..-|++-|+
T Consensus 472 ~~f~~~~sE~e~~r~~---~~l~~kn~~~~~~~i~lGsct~~~---~p~~~~~~~~~~~-f~~~hP~qp~e~~qG~l~~i 544 (954)
T PRK05367 472 PVFNRYHSETEMMRYL---RRLEDKDLALDRSMIPLGSCTMKL---NAAAEMIPITWPE-FANLHPFAPAEQAAGYRELI 544 (954)
T ss_pred cccCCCCCHHHHHHHH---HHHHhcCcCcccceeeCCcCCCcC---CHHHHHHHHhCcc-ccccCCCChHHHHHHHHHHH
Confidence 211111110 000000 011223344455667899763321 1111111111222 2457774 4 9999999999
Q ss_pred HHHHHHHHHHH
Q 015024 388 AVLVLLVLEVT 398 (414)
Q Consensus 388 g~~~~~~~e~~ 398 (414)
-=+--++.|+.
T Consensus 545 ~e~q~~l~elt 555 (954)
T PRK05367 545 DQLEAWLAEIT 555 (954)
T ss_pred HHHHHHHHHHH
Confidence 98888888864
No 163
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=23.36 E-value=7.9e+02 Score=24.91 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCC
Q 015024 166 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 245 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~ 245 (414)
..|++++.+.|+. ....+. ..+.-|+-.-|.|.- .-..++.+..+.+.+.+++.+ ..+++..++-+
T Consensus 31 ~~y~~~l~~Ei~~-~~~~~~-~~i~~i~~gGGtpt~-------l~~~~l~~ll~~i~~~~~~~~---~~eit~e~~p~-- 96 (377)
T PRK08599 31 DEYLDALIKEMNT-YAIRPF-DKLKTIYIGGGTPTA-------LSAEQLERLLTAIHRNLPLSG---LEEFTFEANPG-- 96 (377)
T ss_pred HHHHHHHHHHHHH-hhhcCC-CceeEEEeCCCCccc-------CCHHHHHHHHHHHHHhCCCCC---CCEEEEEeCCC--
Confidence 4688888888843 333321 122123322233321 125788888888888775532 13455555432
Q ss_pred CCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHH-----HHHHHHHHHHHhcCCee--E-EEcCCCCCCHHHHHHH
Q 015024 246 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEK--W-GRVPALGCEATFISDL 317 (414)
Q Consensus 246 ~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~-----Eid~e~~e~a~~~G~~~--~-~~vp~lNd~p~fi~~L 317 (414)
--+.+.++.|++.|+.+|-+=.=+|-.+.++.+. +--.+.-+.++++|+.. . ..+..++.+.+=+...
T Consensus 97 ----~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~ 172 (377)
T PRK08599 97 ----DLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKES 172 (377)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHH
Confidence 2256788888888988777666666666664432 12233445666778642 2 2345567766555544
Q ss_pred HHHHHH
Q 015024 318 ADAVIE 323 (414)
Q Consensus 318 a~lV~~ 323 (414)
.+.+.+
T Consensus 173 l~~~~~ 178 (377)
T PRK08599 173 LAKALA 178 (377)
T ss_pred HHHHHc
Confidence 444443
No 164
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.35 E-value=3.3e+02 Score=27.01 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=41.6
Q ss_pred cHHHHHH---HHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCCCCCCHHHHHHHH
Q 015024 251 YTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPALGCEATFISDLA 318 (414)
Q Consensus 251 ~t~d~L~---~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~lNd~p~fi~~La 318 (414)
+|.++++ ...+.|+..|+++||.|..-.- .++-.-+++++...+..-+.| .|-.+-+++.+..|+
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~---~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQ---EGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCH---HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4555554 4566799999999998775433 455556788887766654444 233455666666555
No 165
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=23.17 E-value=4.7e+02 Score=26.40 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHH
Q 015024 207 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEID 286 (414)
Q Consensus 207 GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid 286 (414)
+..|....+++-+.+++-++.+ .++.+.|.+..| .=..+-++..+.+.| ++++++-.|.++++.
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~---~~~~v~~~~gsg-----T~a~ea~~~nl~~~~-~~~l~i~~G~fg~r~------- 95 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIP---DNYEVLFLQGGA-----TGQFAAVPLNLLAEG-KVADYIVTGAWSKKA------- 95 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCC---CCceEEEEcCCc-----hHHHHHHHHhcCCCC-CeEEEEECCHHHHHH-------
Confidence 3458888888888888888742 247788876545 235566777776655 788888889988887
Q ss_pred HHHHHHHHhcCC
Q 015024 287 VEYKELALKSGI 298 (414)
Q Consensus 287 ~e~~e~a~~~G~ 298 (414)
.+.++..|.
T Consensus 96 ---~~~a~~~g~ 104 (349)
T TIGR01364 96 ---AKEAKKYGV 104 (349)
T ss_pred ---HHHHHHhCC
Confidence 455666776
No 166
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.08 E-value=1.7e+02 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred EEEEEecC--cCC--CCCCCCcHHHHHHHHhhcCCceEEEEccc-ccccchh-hHHHHHHHHHHHHHhcCCe
Q 015024 234 YTLAYQSR--VGP--VEWLKPYTDETIIKLGQKGVKSLLAVPIS-FVSEHIE-TLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 234 ~~lafQSr--~G~--~~WL~P~t~d~L~~L~~~G~k~VvVvP~g-FvsD~lE-Tl~Eid~e~~e~a~~~G~~ 299 (414)
|.++||++ ||. .+|+ +..+.++++++.|++.|-+-..- |--|.-+ .-.+.-.+.++..++.|++
T Consensus 14 w~~~~~~~~~~g~~~~~~~--~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 14 WTVGWVGRDPFGDATRTAL--DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred eccCCCCCCCCCCCCCCCc--CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 88899987 453 4564 77899999999999988765211 1111111 0112223577888899986
No 167
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.82 E-value=8.7e+02 Score=25.22 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=59.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecCcC---CCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhh
Q 015024 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG---PVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIET 281 (414)
Q Consensus 205 ~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr~G---~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lET 281 (414)
..|||..-.-++...++.+-..++.. -.+-|-||.- |++= | +.|-++-++..+.|.++ -|++.
T Consensus 165 SGGDPL~ls~~~L~~ll~~L~~IpHv---~iiRi~TR~pvv~P~RI----t-~~L~~~l~~~~~~v~~~------tH~NH 230 (369)
T COG1509 165 SGGDPLSLSDKKLEWLLKRLRAIPHV---KIIRIGTRLPVVLPQRI----T-DELCEILGKSRKPVWLV------THFNH 230 (369)
T ss_pred cCCCccccCHHHHHHHHHHHhcCCce---eEEEeecccceechhhc----c-HHHHHHHhccCceEEEE------cccCC
Confidence 35898655555555555443333211 1355667752 2222 2 44444444444666554 47777
Q ss_pred HHHHHHHHHHHHH---hcCCe---eEEEcCCCCCCHHHHHHHHHHHH
Q 015024 282 LEEIDVEYKELAL---KSGIE---KWGRVPALGCEATFISDLADAVI 322 (414)
Q Consensus 282 l~Eid~e~~e~a~---~~G~~---~~~~vp~lNd~p~fi~~La~lV~ 322 (414)
=.||+.|.++.++ .+|+. +-+...-.|||++-...|.+...
T Consensus 231 p~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~ 277 (369)
T COG1509 231 PNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALF 277 (369)
T ss_pred hhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHH
Confidence 7888888876554 56663 33456678999988666655443
No 168
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.67 E-value=4.1e+02 Score=26.14 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=34.0
Q ss_pred CCceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 90 LPAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 90 ~~~~V~~amry~~P~i~e~l~~l~---~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
..++|..+- +. +++++++..+ +.|++.++++| |.|...+-....+.+.+..+
T Consensus 73 g~~pvi~gv--~~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 73 GKVPVYTGV--GG-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred CCCcEEEec--Cc-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 356777776 33 5899888664 46999998877 55665555555555555443
No 169
>PRK08609 hypothetical protein; Provisional
Probab=22.57 E-value=1e+03 Score=25.98 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=27.8
Q ss_pred CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 015024 91 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 127 (414)
Q Consensus 91 ~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyP 127 (414)
++.+..-+.-+.-++++.++...+.|++.|.+-+=+|
T Consensus 337 DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTdH~~ 373 (570)
T PRK08609 337 DLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITDHSQ 373 (570)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3333333445677899999999999999999987665
No 170
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=22.22 E-value=2.7e+02 Score=28.79 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=44.5
Q ss_pred chhHHHHHhccCCCCCchHHHHHHHHHHHHHhhccCCCceEEEeee-cCC---CCHHHHHHHH---HHcCCCEEEE
Q 015024 54 APKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMR-YWH---PFTEEAIEQI---KRDGITKLVV 122 (414)
Q Consensus 54 ~~k~~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr-y~~---P~i~e~l~~l---~~~G~~~Iiv 122 (414)
+..+.+.|..||--.||.+-+ .|++.|. .+.++|+=|. +++ --+..+|.+. +.+|+++++-
T Consensus 65 P~Ev~e~Y~~~gRPTPL~RA~-----~LE~~L~---tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~T 132 (432)
T COG1350 65 PEEVREAYLQIGRPTPLIRAK-----NLEEALG---TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTT 132 (432)
T ss_pred cHHHHHHHHHhCCCCchhhhh-----hHHHHhC---CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeec
Confidence 457889999999889998754 6788885 3578888774 433 3466777765 5689998864
No 171
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.16 E-value=1.7e+02 Score=29.12 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceEEEEeecCChhhhhc---ccC-------CchHHHHHHHHHHHHHH
Q 015024 188 QVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLIMEE 224 (414)
Q Consensus 188 ~~~LlfSaHgiP~~~i~---~~G-------DpY~~~~~~t~~~l~e~ 224 (414)
...++|++||+|....+ ++| .||...++..++...++
T Consensus 69 ~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~ 115 (281)
T PRK12360 69 GDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNK 115 (281)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhC
Confidence 34699999999987642 234 47888888888777764
No 172
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.15 E-value=2.8e+02 Score=27.34 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCC
Q 015024 74 TDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGIT 118 (414)
Q Consensus 74 T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~ 118 (414)
.+..++.+++.+.+.|.++.....+..+...+...+.++++.+++
T Consensus 157 g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d 201 (362)
T cd06343 157 GKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGAD 201 (362)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCC
Confidence 334444444444433333222222333344444444444444444
No 173
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=22.12 E-value=3e+02 Score=24.18 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=23.7
Q ss_pred ceEEEeeecCCC-----CHHHHHHHHHHcCCCEEEEEecCCc
Q 015024 92 AKVYVGMRYWHP-----FTEEAIEQIKRDGITKLVVLPLYPQ 128 (414)
Q Consensus 92 ~~V~~amry~~P-----~i~e~l~~l~~~G~~~IivlPLyPq 128 (414)
+.|...+-.+-| .+.+.++.+.+.|+++|.+.|+.|.
T Consensus 151 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 151 IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 345555555544 4445556666778888888888775
No 174
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.12 E-value=71 Score=31.07 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=28.1
Q ss_pred CcHHHHHHHHhhcCCceEEEEcccccccchh
Q 015024 250 PYTDETIIKLGQKGVKSLLAVPISFVSEHIE 280 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lE 280 (414)
|=+.-.|+.|++.|++.++||+-||-.|-+|
T Consensus 32 ~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve 62 (239)
T COG1213 32 EIIYRTIENLAKAGITEFVVVTNGYRADLVE 62 (239)
T ss_pred EeHHHHHHHHHHcCCceEEEEeccchHHHHH
Confidence 5677889999999999999999999999886
No 175
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=21.86 E-value=2.6e+02 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCe
Q 015024 257 IKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 299 (414)
Q Consensus 257 ~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~ 299 (414)
+.|.++|+++|.++. ...+..+..+--..+++.+.+.|..
T Consensus 2 ~~L~~~G~r~i~~i~---~~~~~~~~~~r~~gf~~~~~~~~~~ 41 (160)
T PF13377_consen 2 DYLIERGHRRIAFIG---GPPNSSVSRERLEGFREALKEHGIE 41 (160)
T ss_dssp HHHHHTT-SSEEEEE---SSTTSHHHHHHHHHHHHHHHHTTSE
T ss_pred hHHHHCCCCeEEEEe---cCCCChhHHHHHHHHHHHHHHCCCC
Confidence 568899999999988 4444555555555678888889986
No 176
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.84 E-value=3.7e+02 Score=26.31 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=43.8
Q ss_pred CcHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhc-CCeeEEE-cCC---CCCCHHHHHHHHH
Q 015024 250 PYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKS-GIEKWGR-VPA---LGCEATFISDLAD 319 (414)
Q Consensus 250 P~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~-G~~~~~~-vp~---lNd~p~fi~~La~ 319 (414)
.+|+++++. ..+.|+..|+++||.|..-. -.+|-.-+++++... +..-+.| .|. .+-+++++..|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~---~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKFS---FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 566666654 46679999999999887632 346655678888776 5554444 342 3556766666654
No 177
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=21.73 E-value=5.1e+02 Score=25.55 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCEEEEEecC--Cc--------ccccchHHHHHHHHHHHHhccccCCcceEEeCCC---CCChHHHHH
Q 015024 105 TEEAIEQIKRDGITKLVVLPLY--PQ--------FSISTSGSSLRLLESIFREDEYLVNMQHTVIPSW---YQREGYITA 171 (414)
Q Consensus 105 i~e~l~~l~~~G~~~IivlPLy--Pq--------yS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~---~~~p~yI~a 171 (414)
++..|+++.+.|+.- .++|+. |. ...++.....+.+.-+.+....++++-......+ ..+..+.++
T Consensus 90 ~d~~i~~a~~~Gi~~-~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIEA-ALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-EE-EEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCeE-EEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 566777888888774 366666 32 0223333333333333344444555556667777 678888888
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeecCChh
Q 015024 172 MANLIEKELQNFDSPEQVMIFFSAHGVPL 200 (414)
Q Consensus 172 ~a~~I~~~l~~~~~~~~~~LlfSaHgiP~ 200 (414)
+++.|++.- |.. |.|+|.-+.
T Consensus 169 ~~~~i~~~d-----p~~---L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEND-----PYQ---LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------SS----EEEEE-BT
T ss_pred HHHHHHhhC-----CCC---cEEEeCCCC
Confidence 888887752 222 789998754
No 178
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.62 E-value=9.4e+02 Score=25.15 Aligned_cols=139 Identities=20% Similarity=0.209 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhc-cccCCCCEEEEEecCcCC
Q 015024 166 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE-KRKITNAYTLAYQSRVGP 244 (414)
Q Consensus 166 p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~-~~~~~~~~~lafQSr~G~ 244 (414)
..|++++.+-|+......+....+.=||-.+|+|.-. =..++++....|.+.++ .. +..+++.=.
T Consensus 65 ~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL-------~~~~l~~ll~~l~~~~~~~~---~~~EitiE~---- 130 (416)
T COG0635 65 DEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL-------SPEQLERLLKALRELFNDLD---PDAEITIEA---- 130 (416)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccC-------CHHHHHHHHHHHHHhcccCC---CCceEEEEe----
Confidence 4588888888876665543323566788899998664 25678888888888874 22 224555533
Q ss_pred CCCCCCc--HHHHHHHHhhcCCceEEEEcccccccchhhHHHHHH-----HHHHHHHhcCCee----EEEcCCCCCCHHH
Q 015024 245 VEWLKPY--TDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDV-----EYKELALKSGIEK----WGRVPALGCEATF 313 (414)
Q Consensus 245 ~~WL~P~--t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~-----e~~e~a~~~G~~~----~~~vp~lNd~p~f 313 (414)
-|. +.+.++.+++.|+.||=+=-=+|=.+.+.++..+.. +.-+.+.+.|..+ ..|-=..-+-+.|
T Consensus 131 ----nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~ 206 (416)
T COG0635 131 ----NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESL 206 (416)
T ss_pred ----CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHH
Confidence 254 677899999999999988777888888877765433 3445566677753 2333223344556
Q ss_pred HHHHHHHHH
Q 015024 314 ISDLADAVI 322 (414)
Q Consensus 314 i~~La~lV~ 322 (414)
.+.|...+.
T Consensus 207 ~~~l~~a~~ 215 (416)
T COG0635 207 KEDLEQALE 215 (416)
T ss_pred HHHHHHHHh
Confidence 666666654
No 179
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.26 E-value=4.9e+02 Score=25.36 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=33.9
Q ss_pred CceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEEecCCcccccchHHHHHHHHHHHH
Q 015024 91 PAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146 (414)
Q Consensus 91 ~~~V~~amry~~P~i~e~l~~l~---~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~ 146 (414)
.++|..+- +..+++++++..+ +.|++-++++| |.|...+-....+.+.+..+
T Consensus 67 ~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 67 RVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred CCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHh
Confidence 46666653 6778999888654 56999999987 44555554444454444443
No 180
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=21.06 E-value=4e+02 Score=26.91 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=82.8
Q ss_pred CcceEEeCCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCC
Q 015024 153 NMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITN 232 (414)
Q Consensus 153 ~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~ 232 (414)
+.++-.|.-++| ..=++|....+++..+..+ ..|=+.+||. +++.|-.-.- .+.......+..-+
T Consensus 156 G~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~----~~LPv~~s~T----i~~sG~tl~G---q~~~a~~~~l~~~~--- 220 (311)
T COG0646 156 GADLILIETIFD-TLNAKAAVFAAREVFEELG----VRLPVMISGT----ITDSGRTLSG---QTIEAFLNSLEHLG--- 220 (311)
T ss_pred CCcEEEEehhcc-HHHHHHHHHHHHHHHHhcC----CcccEEEEEE----EecCceecCC---CcHHHHHHHhhccC---
Confidence 345666666664 3445555666666655432 1233455555 3233321111 12233333332111
Q ss_pred CEEEEEecCcCCCCCCCC-cHHHHHHHHhhcCCceEEEEc----cccccc---chhhHHHHHHHHHHHHHhcCCeeEEEc
Q 015024 233 AYTLAYQSRVGPVEWLKP-YTDETIIKLGQKGVKSLLAVP----ISFVSE---HIETLEEIDVEYKELALKSGIEKWGRV 304 (414)
Q Consensus 233 ~~~lafQSr~G~~~WL~P-~t~d~L~~L~~~G~k~VvVvP----~gFvsD---~lETl~Eid~e~~e~a~~~G~~~~~~v 304 (414)
+..+++=.++| | .+...|+++..---.-|.+.| |-+... =-||=++.....++++++.|. + ..=
T Consensus 221 ~~~vGlNCa~G------p~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v-n-IvG 292 (311)
T COG0646 221 PDAVGLNCALG------PDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV-N-IVG 292 (311)
T ss_pred CcEEeeccccC------HHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCc-e-eec
Confidence 35777777665 5 455677777665545666666 345555 344556666666777755544 3 366
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 015024 305 PALGCEATFISDLADAVI 322 (414)
Q Consensus 305 p~lNd~p~fi~~La~lV~ 322 (414)
.|=++.|++|+++++.|.
T Consensus 293 GCCGTTPeHIraia~~v~ 310 (311)
T COG0646 293 GCCGTTPEHIRAIAEAVK 310 (311)
T ss_pred cccCCCHHHHHHHHHHhc
Confidence 899999999999999875
No 181
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.04 E-value=5.7e+02 Score=25.12 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHc---CCCEEEEEecCCcccccchHHHHHHHHHHHHhcccc
Q 015024 75 DAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRD---GITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYL 151 (414)
Q Consensus 75 ~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~---G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~ 151 (414)
++..+.++...+.-+..++|..+-- ..+++++++..+.. |++-++++| |.|...|-....+.+.+..+.....
T Consensus 54 eEr~~~~~~~~~~~~~~~pvi~gv~--~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~~~~~l 129 (290)
T TIGR00683 54 EEKKEIFRIAKDEAKDQIALIAQVG--SVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIAETGGL 129 (290)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEecC--CCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHhhCCCC
Q ss_pred C
Q 015024 152 V 152 (414)
Q Consensus 152 ~ 152 (414)
|
T Consensus 130 p 130 (290)
T TIGR00683 130 N 130 (290)
T ss_pred C
No 182
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=20.85 E-value=1.2e+02 Score=31.22 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=36.1
Q ss_pred CCCCC-cHHHHHHHHhhc-CCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCH
Q 015024 246 EWLKP-YTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 311 (414)
Q Consensus 246 ~WL~P-~t~d~L~~L~~~-G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p 311 (414)
.|.+| .=...|.+++++ |+..|+..-+-...+-.=+..+| .+.++.++++|.+ +..|+.++-+.
T Consensus 6 rw~g~~~dpv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i-~~~k~~ie~~GL~-~~vIEsvpv~e 71 (351)
T PF03786_consen 6 RWFGPEDDPVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEI-RALKERIEAAGLT-LSVIESVPVHE 71 (351)
T ss_dssp E---TTT-SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHH-HHHHHHHHCTT-E-EEEEES----H
T ss_pred eeeCCCCCcchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHH-HHHHHHHHHcCCe-EEEEecCChHH
Confidence 47788 555678888887 99999987766666666566665 3467777899985 88888887665
No 183
>PRK13463 phosphatase PhoE; Provisional
Probab=20.74 E-value=6.6e+02 Score=23.00 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCceEEEeeecCCCCHH--HHHHHHH
Q 015024 67 GSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIK 113 (414)
Q Consensus 67 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~--e~l~~l~ 113 (414)
.+||...-.+||+++.+.|.... + -.-|+.|... ++.+-+.
T Consensus 26 d~~Lt~~G~~Qa~~~~~~l~~~~--~----~~i~sSpl~Ra~qTA~~i~ 68 (203)
T PRK13463 26 NSALTENGILQAKQLGERMKDLS--I----HAIYSSPSERTLHTAELIK 68 (203)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCC--C----CEEEECCcHHHHHHHHHHH
Confidence 59999999999999999986422 2 2346788866 4444443
No 184
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.63 E-value=3.4e+02 Score=26.52 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCcHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 015024 249 KPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 319 (414)
Q Consensus 249 ~P~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~---lNd~p~fi~~La~ 319 (414)
..+|+++++. ..+.|+..|+++||.|..-.- .++-.-+++++...+..-+.| .|. .+-++.+++.|++
T Consensus 76 ~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~---~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 76 SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQ---EGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCH---HHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 3567777665 345699999999999876432 455555778877666543333 342 3456666665553
No 185
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.31 E-value=3.4e+02 Score=26.28 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=40.9
Q ss_pred CcHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCC---CCCCHHHHHHHH
Q 015024 250 PYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPA---LGCEATFISDLA 318 (414)
Q Consensus 250 P~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~---lNd~p~fi~~La 318 (414)
++|+++++. ..+.|++.|+++||.|..-.= .++-.-++++++..+..-+.| .|. ..-++.+++.|+
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 567776664 456699999999998865432 455555788887666654444 332 223455555444
No 186
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.26 E-value=3.9e+02 Score=25.78 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=44.3
Q ss_pred CcHHHHHHH---HhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 015024 250 PYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 319 (414)
Q Consensus 250 P~t~d~L~~---L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~-vp~---lNd~p~fi~~La~ 319 (414)
++|.++++. ..+.|+..|+++||.|..-. -.++-.-+++++...+..-+.| .|. .+-+++.+..|++
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~---~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPYYNKPS---QEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC---HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 566666654 45669999999999988733 3466666788887666554433 454 4556666666654
No 187
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.20 E-value=2.2e+02 Score=29.09 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 015024 283 EEIDVEYKELALKSGIE---KWGRVPALGCEATFISDLADAVIE 323 (414)
Q Consensus 283 ~Eid~e~~e~a~~~G~~---~~~~vp~lNd~p~fi~~La~lV~~ 323 (414)
.++-...++...+.|.. +|..+|=+||+++.++.|++++..
T Consensus 239 ~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~ 282 (345)
T PRK14457 239 ENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG 282 (345)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 34444456666666643 588899999999999999999975
No 188
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.05 E-value=3e+02 Score=26.93 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEE
Q 015024 73 ITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLV 121 (414)
Q Consensus 73 ~T~~qa~~L~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~Ii 121 (414)
+.+..++.+++.+.+.|.++.-...+.-+.+.+...+.++++.|.+-|+
T Consensus 149 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi 197 (344)
T cd06348 149 FSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIV 197 (344)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEE
Confidence 4556666666666655544332333444566777777777777776443
No 189
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=20.05 E-value=1.7e+02 Score=34.32 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=30.2
Q ss_pred CcHHHHHHHHhhcCCceEEEEc---ccccccchhhHHHHHHHHHHHH
Q 015024 250 PYTDETIIKLGQKGVKSLLAVP---ISFVSEHIETLEEIDVEYKELA 293 (414)
Q Consensus 250 P~t~d~L~~L~~~G~k~VvVvP---~gFvsD~lETl~Eid~e~~e~a 293 (414)
|...++.++|.++|+ ++-.+. +.+..|..-|.+|||.-...++
T Consensus 419 ~~~~~v~~~L~~~gI-~l~~~~~~~lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 419 SDADAIADAAAKVGI-NLRVVDANTVTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred CCHHHHHHHHHHCCC-eeEEecCCeEEEEeeccCCHHHHHHHHHHHc
Confidence 345788889999886 343332 5677777778888887776654
Done!