Query 015025
Match_columns 414
No_of_seqs 195 out of 2321
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 8E-21 1.7E-25 162.9 -2.3 258 10-331 97-373 (419)
2 KOG4341 F-box protein containi 99.7 1.1E-19 2.4E-24 162.8 -7.2 33 12-44 73-105 (483)
3 PLN00113 leucine-rich repeat r 99.5 1E-13 2.2E-18 147.8 9.2 258 133-400 93-365 (968)
4 PLN03210 Resistant to P. syrin 99.4 4.7E-13 1E-17 143.6 9.9 121 275-401 778-903 (1153)
5 PLN00113 leucine-rich repeat r 99.4 5.2E-13 1.1E-17 142.5 8.3 15 386-400 423-437 (968)
6 PLN03210 Resistant to P. syrin 99.2 3.2E-11 6.9E-16 129.7 10.5 232 159-402 610-880 (1153)
7 KOG4341 F-box protein containi 99.1 9.4E-13 2E-17 118.7 -5.3 261 133-399 138-434 (483)
8 KOG4194 Membrane glycoprotein 99.1 8.8E-12 1.9E-16 117.0 -2.1 103 133-240 149-256 (873)
9 KOG4194 Membrane glycoprotein 99.1 1.8E-11 4E-16 114.9 -0.2 230 133-371 173-425 (873)
10 cd00116 LRR_RI Leucine-rich re 99.0 8.4E-11 1.8E-15 109.3 1.8 105 133-240 23-148 (319)
11 PF12937 F-box-like: F-box-lik 99.0 3.7E-10 7.9E-15 72.3 2.8 35 11-45 1-35 (47)
12 KOG2120 SCF ubiquitin ligase, 98.9 9.5E-11 2.1E-15 101.6 -3.7 169 184-353 187-374 (419)
13 KOG3207 Beta-tubulin folding c 98.8 5E-10 1.1E-14 101.9 -0.9 174 158-331 119-311 (505)
14 KOG0444 Cytoskeletal regulator 98.8 2.3E-11 5E-16 115.2 -10.7 252 146-408 89-379 (1255)
15 KOG0444 Cytoskeletal regulator 98.8 5.3E-11 1.1E-15 112.8 -9.0 120 249-371 243-371 (1255)
16 cd00116 LRR_RI Leucine-rich re 98.7 5E-09 1.1E-13 97.3 2.8 156 155-310 76-260 (319)
17 PRK15387 E3 ubiquitin-protein 98.7 3.2E-08 6.9E-13 100.1 8.2 59 150-217 214-272 (788)
18 KOG3207 Beta-tubulin folding c 98.6 4.6E-09 9.9E-14 95.8 -0.7 176 133-310 146-336 (505)
19 PF00646 F-box: F-box domain; 98.6 1.7E-08 3.8E-13 64.9 0.8 38 10-47 2-39 (48)
20 PRK15370 E3 ubiquitin-protein 98.5 1.9E-07 4.1E-12 94.9 5.9 198 133-353 178-378 (754)
21 KOG1909 Ran GTPase-activating 98.5 4.4E-08 9.5E-13 87.1 0.8 191 100-310 28-251 (382)
22 smart00256 FBOX A Receptor for 98.4 1.5E-07 3.2E-12 58.2 2.3 34 14-47 1-34 (41)
23 PRK15387 E3 ubiquitin-protein 98.4 6.4E-07 1.4E-11 90.8 7.4 109 133-259 222-330 (788)
24 KOG1909 Ran GTPase-activating 98.3 8.3E-08 1.8E-12 85.4 -1.7 216 157-372 27-308 (382)
25 KOG0618 Serine/threonine phosp 98.2 9.7E-08 2.1E-12 94.9 -3.3 42 270-312 447-488 (1081)
26 PRK15370 E3 ubiquitin-protein 98.2 2.1E-06 4.6E-11 87.4 5.6 216 133-371 199-424 (754)
27 KOG2982 Uncharacterized conser 98.1 1.5E-06 3.3E-11 75.9 2.3 182 133-316 71-265 (418)
28 PF14580 LRR_9: Leucine-rich r 98.1 1.3E-06 2.8E-11 72.5 1.3 38 272-309 110-149 (175)
29 KOG0472 Leucine-rich repeat pr 98.1 4.5E-08 9.8E-13 88.6 -8.0 101 133-240 183-286 (565)
30 KOG1947 Leucine rich repeat pr 98.0 7.9E-07 1.7E-11 87.5 -0.6 194 133-335 188-415 (482)
31 KOG3665 ZYG-1-like serine/thre 98.0 2.2E-06 4.8E-11 86.4 1.6 151 160-310 122-285 (699)
32 KOG0618 Serine/threonine phosp 98.0 3.3E-07 7.1E-12 91.3 -4.7 206 160-370 219-460 (1081)
33 KOG1947 Leucine rich repeat pr 97.9 1.1E-06 2.3E-11 86.6 -1.6 127 158-284 186-330 (482)
34 PF14580 LRR_9: Leucine-rich r 97.9 1.4E-06 3.1E-11 72.2 -1.4 41 273-313 86-126 (175)
35 KOG0617 Ras suppressor protein 97.7 4.7E-07 1E-11 72.7 -6.5 151 155-310 28-183 (264)
36 KOG2982 Uncharacterized conser 97.7 2.5E-05 5.5E-10 68.5 3.2 152 161-313 46-212 (418)
37 KOG4658 Apoptotic ATPase [Sign 97.5 0.00039 8.4E-09 72.4 9.1 80 160-239 523-605 (889)
38 KOG1859 Leucine-rich repeat pr 97.4 1.7E-05 3.6E-10 77.6 -2.0 204 98-311 51-290 (1096)
39 KOG1259 Nischarin, modulator o 97.4 0.00011 2.3E-09 64.8 2.4 59 271-331 280-339 (490)
40 KOG4658 Apoptotic ATPase [Sign 97.1 8.1E-05 1.8E-09 77.4 -1.0 199 133-335 571-784 (889)
41 COG5238 RNA1 Ran GTPase-activa 97.1 0.00043 9.4E-09 60.2 3.5 40 179-218 89-131 (388)
42 KOG1259 Nischarin, modulator o 97.0 8E-05 1.7E-09 65.5 -1.6 126 182-311 284-410 (490)
43 KOG0617 Ras suppressor protein 96.9 1.5E-05 3.2E-10 64.3 -6.4 117 149-288 68-186 (264)
44 KOG3665 ZYG-1-like serine/thre 96.9 0.00036 7.8E-09 70.8 1.2 103 132-239 121-230 (699)
45 PRK15386 type III secretion pr 96.9 0.0022 4.8E-08 60.2 6.2 92 207-309 94-186 (426)
46 PF13855 LRR_8: Leucine rich r 96.8 0.00017 3.7E-09 48.7 -1.0 34 161-194 2-37 (61)
47 KOG0472 Leucine-rich repeat pr 96.8 7.2E-06 1.6E-10 74.7 -10.5 23 380-402 517-539 (565)
48 KOG4237 Extracellular matrix p 96.8 9E-05 2E-09 67.6 -3.7 57 134-194 68-128 (498)
49 KOG2123 Uncharacterized conser 96.7 9.9E-05 2.1E-09 64.2 -3.8 96 228-327 18-123 (388)
50 PRK15386 type III secretion pr 96.7 0.0066 1.4E-07 57.2 7.6 32 208-239 73-104 (426)
51 PF13855 LRR_8: Leucine rich r 96.6 0.00038 8.3E-09 47.0 -0.5 38 272-310 22-59 (61)
52 KOG4237 Extracellular matrix p 96.5 0.00029 6.2E-09 64.4 -2.4 75 146-223 55-131 (498)
53 COG5238 RNA1 Ran GTPase-activa 96.5 0.0017 3.6E-08 56.6 2.2 73 122-194 45-132 (388)
54 KOG2739 Leucine-rich acidic nu 96.4 0.00039 8.4E-09 60.2 -2.0 108 152-259 35-151 (260)
55 COG4886 Leucine-rich repeat (L 96.4 0.0018 4E-08 62.0 2.3 36 272-310 252-287 (394)
56 KOG0281 Beta-TrCP (transducin 96.1 0.0018 3.9E-08 57.8 0.5 37 7-43 71-111 (499)
57 COG4886 Leucine-rich repeat (L 96.1 0.0031 6.6E-08 60.5 2.0 167 158-331 114-287 (394)
58 KOG1644 U2-associated snRNP A' 96.0 0.0075 1.6E-07 50.4 3.7 79 158-237 62-148 (233)
59 PF07723 LRR_2: Leucine Rich R 96.0 0.011 2.4E-07 31.9 3.1 25 183-207 1-26 (26)
60 KOG2739 Leucine-rich acidic nu 95.9 0.0013 2.9E-08 56.9 -1.0 84 227-310 63-153 (260)
61 PLN03150 hypothetical protein; 95.7 0.012 2.6E-07 59.8 4.5 104 230-334 419-528 (623)
62 KOG2997 F-box protein FBX9 [Ge 95.6 0.0058 1.3E-07 54.2 1.5 36 8-43 104-144 (366)
63 KOG1644 U2-associated snRNP A' 95.6 0.035 7.7E-07 46.5 5.9 107 160-288 42-153 (233)
64 PF12799 LRR_4: Leucine Rich r 95.5 0.0058 1.3E-07 38.0 1.0 15 203-217 20-34 (44)
65 PF08387 FBD: FBD; InterPro: 95.3 0.017 3.6E-07 37.2 2.7 38 361-400 13-51 (51)
66 KOG3864 Uncharacterized conser 95.1 0.0045 9.8E-08 51.6 -0.6 90 151-240 92-187 (221)
67 PLN03150 hypothetical protein; 94.4 0.037 8E-07 56.3 3.8 80 252-332 419-501 (623)
68 PLN03215 ascorbic acid mannose 94.1 0.031 6.7E-07 52.0 2.3 37 11-47 4-41 (373)
69 KOG2123 Uncharacterized conser 94.0 0.0035 7.6E-08 54.9 -3.8 77 158-235 39-123 (388)
70 PF12799 LRR_4: Leucine Rich r 93.9 0.071 1.5E-06 33.0 2.9 34 275-310 1-34 (44)
71 KOG0531 Protein phosphatase 1, 93.6 0.0056 1.2E-07 59.0 -3.7 36 159-194 94-130 (414)
72 smart00579 FBD domain in FBox 93.0 0.11 2.5E-06 36.1 3.2 40 361-402 4-44 (72)
73 KOG3864 Uncharacterized conser 92.4 0.017 3.7E-07 48.3 -2.0 43 273-315 123-166 (221)
74 KOG0532 Leucine-rich repeat (L 91.5 0.0047 1E-07 59.4 -7.0 154 151-310 112-270 (722)
75 KOG1859 Leucine-rich repeat pr 90.4 0.03 6.5E-07 55.8 -2.9 143 159-310 83-264 (1096)
76 KOG0531 Protein phosphatase 1, 90.1 0.058 1.3E-06 52.1 -1.3 127 157-288 69-199 (414)
77 KOG0274 Cdc4 and related F-box 90.0 0.14 3E-06 50.7 1.3 39 6-44 103-141 (537)
78 KOG0532 Leucine-rich repeat (L 89.3 0.02 4.3E-07 55.3 -4.9 66 150-218 134-200 (722)
79 PF13013 F-box-like_2: F-box-l 88.7 0.26 5.6E-06 37.3 1.6 30 10-39 21-50 (109)
80 PF13306 LRR_5: Leucine rich r 85.3 0.31 6.7E-06 38.1 0.4 11 205-215 10-20 (129)
81 PF13516 LRR_6: Leucine Rich r 83.9 0.61 1.3E-05 24.3 1.1 21 182-202 2-22 (24)
82 smart00367 LRR_CC Leucine-rich 83.8 0.74 1.6E-05 24.6 1.4 20 182-201 2-22 (26)
83 PF13306 LRR_5: Leucine rich r 77.6 0.6 1.3E-05 36.4 -0.5 10 159-168 11-20 (129)
84 PF13504 LRR_7: Leucine rich r 76.2 1.6 3.5E-05 20.7 1.0 13 161-173 2-14 (17)
85 KOG4579 Leucine-rich repeat (L 72.8 0.91 2E-05 35.9 -0.6 60 159-220 52-113 (177)
86 PF00560 LRR_1: Leucine Rich R 68.7 3.6 7.9E-05 20.9 1.4 9 302-310 2-10 (22)
87 smart00368 LRR_RI Leucine rich 63.8 5.5 0.00012 21.7 1.6 21 182-202 2-22 (28)
88 KOG3926 F-box proteins [Amino 58.4 7.6 0.00016 34.2 2.2 50 7-56 198-254 (332)
89 KOG3763 mRNA export factor TAP 56.1 4.2 9.1E-05 39.7 0.3 62 179-240 215-281 (585)
90 PF09372 PRANC: PRANC domain; 52.7 10 0.00022 28.0 1.9 25 9-33 70-94 (97)
91 KOG4579 Leucine-rich repeat (L 45.4 1.2 2.6E-05 35.3 -4.2 58 229-287 53-112 (177)
92 KOG3763 mRNA export factor TAP 41.1 14 0.00029 36.4 1.2 32 275-306 270-307 (585)
93 smart00370 LRR Leucine-rich re 33.2 22 0.00047 18.6 0.7 13 182-194 2-14 (26)
94 smart00369 LRR_TYP Leucine-ric 33.2 22 0.00047 18.6 0.7 13 182-194 2-14 (26)
95 KOG1665 AFH1-interacting prote 31.1 69 0.0015 27.6 3.7 60 179-240 168-227 (302)
96 KOG4408 Putative Mg2+ and Co2+ 30.6 14 0.00031 33.7 -0.4 34 11-44 8-41 (386)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8e-21 Score=162.94 Aligned_cols=258 Identities=24% Similarity=0.302 Sum_probs=159.0
Q ss_pred ccCCCChHHHHHHhcCCChhhHHhhhccccchhhh------hcccCeEEeeCCCCCCCCCCCccCccccccccchhhhhH
Q 015025 10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV 83 (414)
Q Consensus 10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (414)
.++.||||++..||+.|+.+++.+++.|||||+++ |... +.....+.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p----------------------- 150 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP----------------------- 150 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh-----------------------
Confidence 36789999999999999999999999999999975 4432 333333222
Q ss_pred HHHHHHHHHHHHhhhcCCcccceEEEEEEecccCCChhHHHHHHHHH--HhcCceeeEEEeeeCCCccccCCcccccccc
Q 015025 84 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANS 161 (414)
Q Consensus 84 ~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~--~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~ 161 (414)
+...+.+ . ..|..|++- .. +... .+....+ ...++++++ +.........+-..+..|..
T Consensus 151 ----~~l~~l~----~--rgV~v~Rla--r~-~~~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 151 ----DVLGRLL----S--RGVIVFRLA--RS-FMDQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSK 211 (419)
T ss_pred ----hHHHHHH----h--CCeEEEEcc--hh-hhcC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHh
Confidence 2233333 1 123333322 10 0111 1122222 224678888 55544555666666677888
Q ss_pred ccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCcee---ecc-CCCCCcEE
Q 015025 162 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVS-KASKLKIM 234 (414)
Q Consensus 162 L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~-~~~~L~~L 234 (414)
|+.|.+.+..+.++. ....=.+|+.|+|+.+.- +..+++.++++|..|.+|+|++|...... .+. --++|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 888888887776654 233346677777777755 66677777777777777777777643221 111 01566666
Q ss_pred EeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025 235 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 314 (414)
Q Consensus 235 ~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 314 (414)
++++|.-.++ ...+.....+||+|.+||++.+....+.....+.+|+.|++|.++.|..+.
T Consensus 292 NlsG~rrnl~-------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 292 NLSGYRRNLQ-------------------KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred hhhhhHhhhh-------------------hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC
Confidence 6666541111 011112234678888888876654434556667789999999999996553
Q ss_pred cc----cccccccceEEeccC
Q 015025 315 KI----KISSNQLKNLLFRSC 331 (414)
Q Consensus 315 ~~----~~~~~~L~~L~l~~c 331 (414)
.- ....|.|.+|++-+|
T Consensus 353 p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 353 PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHeeeeccCcceEEEEeccc
Confidence 21 234789999999888
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.70 E-value=1.1e-19 Score=162.84 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=30.8
Q ss_pred CCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025 12 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44 (414)
Q Consensus 12 ~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l 44 (414)
-.||.|++..|||+|+.++++++|++|+-|.-+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~ 105 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL 105 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 469999999999999999999999999999854
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=1e-13 Score=147.77 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=158.4
Q ss_pred cCceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 211 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 211 (414)
++++.|+ +..+.. ...+|..++ .+++|++|++++|.+........+++|++|+++++.++. .+...+.++++|+.
T Consensus 93 ~~L~~L~--Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTIN--LSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEE--CCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCE
Confidence 6888888 544322 246777766 688999999998887644344568889999998887742 23334567888999
Q ss_pred EEeeccCCCcee--eccCCCCCcEEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeeccc
Q 015025 212 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 287 (414)
Q Consensus 212 L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (414)
|++.+|.....+ .+.++++|+.|++++|. ..+......+++|++|+++.+......+..++.+++|+.|+++++.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 998888643322 23467888888888775 11122223567888888875554444555567788888888887766
Q ss_pred chHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeee---ccCCccceEEeeeccc----ceE
Q 015025 288 ADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI----PII 357 (414)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~----~~~ 357 (414)
+... ...+..+++|+.|++.+|.....+ ....++|+.|++++|.-...++ ...++|+.+++.++.+ |..
T Consensus 249 ~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred cccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 5432 234566778888888877433222 2235677777777664222221 2345666666666542 223
Q ss_pred eeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEE
Q 015025 358 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL 400 (414)
Q Consensus 358 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~ 400 (414)
...+++|+.+++..+... ..++..+..+++|+.|+++.
T Consensus 328 ~~~l~~L~~L~L~~n~l~-----~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFS-----GEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred HhcCCCCCEEECcCCCCc-----CcCChHHhCCCCCcEEECCC
Confidence 345667777776533211 11233445556666666553
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=4.7e-13 Score=143.61 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc--cccccceEEeccCCCceeeeccCCccceEEeeec
Q 015025 275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFN 352 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~ 352 (414)
++|+.|+++++...... ...+.++++|+.|++.+|..++.+.. .+++|+.|++++|..++.++-...+++.+++.++
T Consensus 778 ~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence 35555555544322221 22345677777777777765555432 3567777777777777665544456777777666
Q ss_pred c---cceEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 353 P---IPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 353 ~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
. +|.....+++|+.+++..|.+. ..+...+..+++|+.+.++.+
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L-----~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNL-----QRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCc-----CccCcccccccCCCeeecCCC
Confidence 5 3344556778888888755442 223333445555555555433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=5.2e-13 Score=142.45 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=8.0
Q ss_pred HhccCcceeEEEEEE
Q 015025 386 FLGVSKQIESLKLSL 400 (414)
Q Consensus 386 ~l~~~~~L~~L~i~~ 400 (414)
.+.++++|+.|+++.
T Consensus 423 ~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 423 EFTKLPLVYFLDISN 437 (968)
T ss_pred hHhcCCCCCEEECcC
Confidence 344555566555553
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=3.2e-11 Score=129.68 Aligned_cols=232 Identities=17% Similarity=0.167 Sum_probs=132.2
Q ss_pred cccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEE
Q 015025 159 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIME 235 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~ 235 (414)
..+|+.|++.++.+...+ ....+++|+.|+|+++..- ..++. ++.+++|+.|.+.+|..+..+. +..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 456666776666554433 3445677777777665321 01111 4456777777777776544432 23456677777
Q ss_pred eeeccccceeee--ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH----------------------
Q 015025 236 IRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE---------------------- 291 (414)
Q Consensus 236 i~~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------- 291 (414)
+.+|. .+..+. ..+++|++|.+++|.....++ ...++|+.|+++++.+..-.
T Consensus 688 L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 688 MSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCC-CcCccCCcCCCCCCCEEeCCCCCCccccc---cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 77665 333222 245566666666433211111 11234455555443321100
Q ss_pred ------HHHHhhcCCCCcEEEecCcccccccc---ccccccceEEeccCCCceeeec--cCCccceEEeeeccc-ceEee
Q 015025 292 ------FNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVIDV--DAPNLLLFTYEFNPI-PIISI 359 (414)
Q Consensus 292 ------~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~l~i--~~~~L~~l~~~~~~~-~~~~~ 359 (414)
........++|+.|++.+|+....++ ..+++|+.|++++|.+++.++. ..++|+.+++.++.. .....
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 00011234688888988886555443 3467899999999999888764 367788888888651 11111
Q ss_pred ecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 360 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 360 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
..++|+.|++.... +..++.-++++++|+.|.++.++
T Consensus 844 ~~~nL~~L~Ls~n~------i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 844 ISTNISDLNLSRTG------IEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred cccccCEeECCCCC------CccChHHHhcCCCCCEEECCCCC
Confidence 23578888875432 44566678889999999887543
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=9.4e-13 Score=118.74 Aligned_cols=261 Identities=15% Similarity=0.139 Sum_probs=156.3
Q ss_pred cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecccc-cCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcC
Q 015025 133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRL-EQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASEC 206 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~~l-~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~ 206 (414)
..+++|. ++++.. ....+-.....|+++++|.+.+|.. +... ....|++|+++++..|.. ++..+..+..+|
T Consensus 138 g~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 5678888 766543 3445555566799999999988873 2211 456789999999999655 888888889999
Q ss_pred CcccEEEeeccCCCce----eeccCCCCCcEEEeeecc-cc---ceeeeecCCCeeEEEEEeeCCCC--ceEEeecCCCC
Q 015025 207 PLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EE---IEIVEISVPSLQQLTLLFYGARR--PRVVEVARSPH 276 (414)
Q Consensus 207 p~Le~L~l~~~~~~~~----~~~~~~~~L~~L~i~~~~-~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~ 276 (414)
|+|++|++++|+.+.. -...++..++.+...+|. .. +..+...++-+..+++..|.... .....--.+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 9999999999987654 122356677777667776 11 12222234444444433332211 11111123566
Q ss_pred ccEEEeeec-ccchHHHHHHhhcCCCCcEEEecCcccccc-----ccccccccceEEeccCCC-----ceeeeccCCccc
Q 015025 277 LKKLDLVSV-YFADNEFNHLISKFPSLEDLFVTRCCLPGK-----IKISSNQLKNLLFRSCKY-----LKVIDVDAPNLL 345 (414)
Q Consensus 277 L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~L~~L~l~~c~~-----L~~l~i~~~~L~ 345 (414)
|+.|+.+++ ++++..+..+..++++|+.|.+.+|..... +..+++.|+.+++..|.. |..+..++|.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 777777654 355566667777778888888887754333 344567777777777743 344556677777
Q ss_pred eEEeeecc-cc--------eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEE
Q 015025 346 LFTYEFNP-IP--------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 399 (414)
Q Consensus 346 ~l~~~~~~-~~--------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~ 399 (414)
.+.++.++ ++ .....+..|+.+++..+....+ ..-+.+.++++||..++.
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----ATLEHLSICRNLERIELI 434 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH----HHHHHHhhCcccceeeee
Confidence 77666433 11 1122344555556654443332 223445566666665444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=8.8e-12 Score=117.00 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=61.2
Q ss_pred cCceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+-++.|+ +..+ .-.++|...+. -.++++|+|++|.++... .+.++.+|.+|.|+++.++. -....+.+.|+|
T Consensus 149 ~alrslD--LSrN--~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLD--LSRN--LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhh--hhhc--hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchh
Confidence 4566666 4321 22344443333 367888888888766543 56677788888888887742 223335567888
Q ss_pred cEEEeeccCC--CceeeccCCCCCcEEEeeecc
Q 015025 210 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 210 e~L~l~~~~~--~~~~~~~~~~~L~~L~i~~~~ 240 (414)
+.|+|..+.. ++.+.+.++++|+.|.+..+.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 8888776643 223444556666666665554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.07 E-value=1.8e-11 Score=114.88 Aligned_cols=230 Identities=19% Similarity=0.155 Sum_probs=148.5
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEec-hHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~L 209 (414)
.++++|+ +..+.....+.. .+-+..+|..|+|+.|+++..+ .+..+|+|+.|+|..+.+. .+.+- +.+.|.|
T Consensus 173 ~ni~~L~--La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLN--LASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSL 247 (873)
T ss_pred CCceEEe--eccccccccccc-cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhh
Confidence 4778888 554333222222 1223568999999999987765 6677999999999999882 22332 4678899
Q ss_pred cEEEeeccCC--CceeeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025 210 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 283 (414)
Q Consensus 210 e~L~l~~~~~--~~~~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (414)
+.|.+..+.. +++-.+.++.+++.|++..+. ++.+ ...+..|+.|+++++....--......+++|+.|+|+
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 9999887753 344444467899999998774 3332 2367788888888543322122234568999999999
Q ss_pred ecccchHHHHHHhhcCCCCcEEEecCcccc---ccccccccccceEEeccCCCcee-------eeccCCccceEEeeecc
Q 015025 284 SVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKYLKV-------IDVDAPNLLLFTYEFNP 353 (414)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~---~~~~~~~~~L~~L~l~~c~~L~~-------l~i~~~~L~~l~~~~~~ 353 (414)
++.++.-.. +-+..+..|++|.|+.+..- +.......+|+.|++.+.. |.- ..-+.+.|+.|.+.|+.
T Consensus 326 ~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 326 SNRITRLDE-GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred ccccccCCh-hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCce
Confidence 988765332 22445677999999887321 2223335677778776542 211 11236778888888877
Q ss_pred ---cc-eEeeecCCccEEEEEE
Q 015025 354 ---IP-IISINVPCPWKVSFVC 371 (414)
Q Consensus 354 ---~~-~~~~~~~~L~~l~i~~ 371 (414)
+| ..+..+++|++|++..
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred eeecchhhhccCcccceecCCC
Confidence 33 4445677888888863
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=8.4e-11 Score=109.29 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred cCceeeEEEeeeCCC---ccccCCccccccccccEEEEecccccC--Cc------cccCCCCcceEEceeEEech---HH
Q 015025 133 NGVRELDFENITDEN---TVYTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QM 198 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~---~~~~l~~~l~~~~~L~~L~l~~~~l~~--~~------~~~~l~~L~~L~L~~~~~~~---~~ 198 (414)
.+++++. +..+.. ....++..+...++|+.|+++++.+.. .. ....+++|+.|+++++.+.. ..
T Consensus 23 ~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3466676 543332 122344444555667777776665441 10 12335567777776666632 22
Q ss_pred HHHHHhcCCcccEEEeeccCCCce----e--eccCC-CCCcEEEeeecc
Q 015025 199 VQKLASECPLLEDLCFSNCWGLKH----L--CVSKA-SKLKIMEIRSFS 240 (414)
Q Consensus 199 l~~ll~~~p~Le~L~l~~~~~~~~----~--~~~~~-~~L~~L~i~~~~ 240 (414)
+..+..+ +.|++|++.+|..... + .+..+ ++|+.|++.+|.
T Consensus 101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 2333333 4577777666653210 0 11123 566666666654
No 11
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=3.7e-10 Score=72.26 Aligned_cols=35 Identities=31% Similarity=0.723 Sum_probs=31.0
Q ss_pred cCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025 11 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 45 (414)
Q Consensus 11 i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw 45 (414)
|+.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999764
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.5e-11 Score=101.56 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=91.6
Q ss_pred cceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEEeeecccccee-----eeecCCCeeEE
Q 015025 184 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEI-----VEISVPSLQQL 256 (414)
Q Consensus 184 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~l~~-----~~~~~p~L~~L 256 (414)
|+.|+|+...++...+..+++.|.+|+.|.|.+....+.+. +..-.+|+.|+++.|. ++.+ +..+|.+|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHhhc
Confidence 44444444444444444444445555544444443322211 1111344555554444 2211 12244555555
Q ss_pred EEEeeCCCCc-eEEeecC-CCCccEEEeeecc--cchHHHHHHhhcCCCCcEEEecCcccccc----ccccccccceEEe
Q 015025 257 TLLFYGARRP-RVVEVAR-SPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLF 328 (414)
Q Consensus 257 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l 328 (414)
.++||+...+ +...+.. -++|+.|+++|+. +....+..+...||+|.+|+|++|-.+.. ....|+.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 5555444221 1111112 3577777777653 33345566788999999999999955544 3445899999999
Q ss_pred ccCCCce---eeec-cCCccceEEeeecc
Q 015025 329 RSCKYLK---VIDV-DAPNLLLFTYEFNP 353 (414)
Q Consensus 329 ~~c~~L~---~l~i-~~~~L~~l~~~~~~ 353 (414)
+.|-.+. -+.+ ..|.|..++..|+-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9995541 1222 47888888877753
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5e-10 Score=101.94 Aligned_cols=174 Identities=20% Similarity=0.186 Sum_probs=123.3
Q ss_pred ccccccEEEEecccccCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCC---ceeeccCCCC
Q 015025 158 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASK 230 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~---~~~~~~~~~~ 230 (414)
+.+.|+...|.++.+...+ .+..||+++.|+|+.+-+ ....+..++.-+|+||.|+|+.+... .......++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3566778888887766554 456789999999998877 67788888889999999999887642 1222224689
Q ss_pred CcEEEeeecc---ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEe
Q 015025 231 LKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 307 (414)
Q Consensus 231 L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 307 (414)
|+.|.+++|. .....+...+|+|+.|.+..+............+..|++|+|+++.+.+..-......+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999997 2334445678999999998543211122223456789999999988776655566788999999999
Q ss_pred cCc--ccccc-------ccccccccceEEeccC
Q 015025 308 TRC--CLPGK-------IKISSNQLKNLLFRSC 331 (414)
Q Consensus 308 ~~c--~~~~~-------~~~~~~~L~~L~l~~c 331 (414)
+.| +.+.. ....+++|++|++...
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccC
Confidence 887 22211 1345889999977654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.79 E-value=2.3e-11 Score=115.19 Aligned_cols=252 Identities=16% Similarity=0.093 Sum_probs=142.5
Q ss_pred CCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-
Q 015025 146 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL- 223 (414)
Q Consensus 146 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~- 223 (414)
.-....+|..++.+..|..|+|+++.+...+ ....-.++-.|+|++++++ .....+.-+...|-.|+|+.+. ++.+
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr-Le~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR-LEMLP 166 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch-hhhcC
Confidence 3445678888888888888888888876554 4555667888888888772 1223333445556666666654 2222
Q ss_pred -eccCCCCCcEEEeeecc---ccceeeeecCCCeeEEEEEeeCC-CCceEEeecCCCCccEEEeeecccchHHHHHHhhc
Q 015025 224 -CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISK 298 (414)
Q Consensus 224 -~~~~~~~L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (414)
.+..+..|+.|.+++++ .++..++ .+.+|+.|.++.... ...++-++..+.+|..++++.+++.- +...+-+
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~ 243 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYK 243 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhh
Confidence 23345677777777775 2222111 344556666663221 23345556677778888887776543 2233445
Q ss_pred CCCCcEEEecCccccc--cccccccccceEEeccC------------CCcee------------eecc---CCccceEEe
Q 015025 299 FPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSC------------KYLKV------------IDVD---APNLLLFTY 349 (414)
Q Consensus 299 ~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c------------~~L~~------------l~i~---~~~L~~l~~ 349 (414)
+++|+.|.|+++..-+ --.....+|+.|+++.. +.|+. ++-+ ..+|+.|..
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 6777777777762211 11111334555554432 11111 1111 112222222
Q ss_pred eecc---cceEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEEEEEeeE
Q 015025 350 EFNP---IPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYK 408 (414)
Q Consensus 350 ~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~~~~~~~ 408 (414)
..+. +|-+.+.++.|++|.+.+.. +..++..+.-++-|+.|++.-+++.+|.|
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~Nr------LiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDHNR------LITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hccccccCchhhhhhHHHHHhcccccc------eeechhhhhhcCCcceeeccCCcCccCCC
Confidence 2222 34455567788888876433 33456666777888999999888888866
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.77 E-value=5.3e-11 Score=112.80 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=56.4
Q ss_pred cCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc-ccccccccccccceEE
Q 015025 249 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC-LPGKIKISSNQLKNLL 327 (414)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~~~~~~~~~~L~~L~ 327 (414)
..++|+.|.++++. ........+...+|++|+++.+.++. +...+..++.|+.|.+.++. ..+.++....+|..|.
T Consensus 243 ~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 44555555555221 12233333444555555555555432 22233445666666666552 1222222222333321
Q ss_pred ecc--CCCceeeec---cCCccceEEeeecc---cceEeeecCCccEEEEEE
Q 015025 328 FRS--CKYLKVIDV---DAPNLLLFTYEFNP---IPIISINVPCPWKVSFVC 371 (414)
Q Consensus 328 l~~--c~~L~~l~i---~~~~L~~l~~~~~~---~~~~~~~~~~L~~l~i~~ 371 (414)
+-. .++|+.++- .|+.|+.+.+..+. .|..+.-++-|+.|++..
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccC
Confidence 111 122333331 25666666666655 345556688899998863
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=5e-09 Score=97.34 Aligned_cols=156 Identities=20% Similarity=0.119 Sum_probs=81.4
Q ss_pred cccccccccEEEEecccccCCc--cccCC---CCcceEEceeEEechHHHHH---HHhcC-CcccEEEeeccCCCce---
Q 015025 155 AIFSANSVTNLRLVWCRLEQPF--DSIML---CSLKKLTLERVCLDEQMVQK---LASEC-PLLEDLCFSNCWGLKH--- 222 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l---~~L~~L~L~~~~~~~~~l~~---ll~~~-p~Le~L~l~~~~~~~~--- 222 (414)
.+..+++|++|++++|.+.... ....+ ++|++|+++++.+++..... .+..+ ++|++|.+.+|.....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3444667777777777664211 11222 44777888777775444333 23445 7778888777764311
Q ss_pred -e--eccCCCCCcEEEeeeccc---cceeee---ecCCCeeEEEEEeeCCCC----ceEEeecCCCCccEEEeeecccch
Q 015025 223 -L--CVSKASKLKIMEIRSFSE---EIEIVE---ISVPSLQQLTLLFYGARR----PRVVEVARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 223 -~--~~~~~~~L~~L~i~~~~~---~l~~~~---~~~p~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 289 (414)
+ .+..+++|+.|++++|.- .+..+. ...++|++|+++.+...+ .+...+..+++|+.|+++++.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 0 122345677777776640 111111 123466666666433211 111123445666777776666655
Q ss_pred HHHHHHhhcC----CCCcEEEecCc
Q 015025 290 NEFNHLISKF----PSLEDLFVTRC 310 (414)
Q Consensus 290 ~~~~~~~~~~----~~L~~L~l~~c 310 (414)
..+..+...+ +.|++|++.+|
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCC
Confidence 4444443332 56666666666
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=3.2e-08 Score=100.09 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=32.1
Q ss_pred ccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeecc
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 217 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~ 217 (414)
..+|..+. ++|+.|.+.+|.++..+ ...++|++|++++|.++. +.. ..+.|++|.+.+|
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N 272 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSN 272 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---cccccceeeccCC
Confidence 35665544 35677777776665432 234667777777766531 111 1345555555554
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.6e-09 Score=95.83 Aligned_cols=176 Identities=20% Similarity=0.169 Sum_probs=117.3
Q ss_pred cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCCc
Q 015025 133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 208 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~ 208 (414)
+++++|+ +...-. ....+-..+-..++|+.|+++.|.+..+. .-..+++||+|+|++|.++...+..++..||.
T Consensus 146 ~~v~~Ld--LS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 146 PNVRDLD--LSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred Ccceeec--chhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 6777877 433211 12233333445788999999988865543 23468999999999999998999999999999
Q ss_pred ccEEEeeccCCCcee--eccCCCCCcEEEeeecc---ccceeeeecCCCeeEEEEEeeCCCCce------EEeecCCCCc
Q 015025 209 LEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPR------VVEVARSPHL 277 (414)
Q Consensus 209 Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L 277 (414)
|+.|.+.++...... ...-+..|+.|+++++. .........+|.|..|.++.+|..+-- ......+|+|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999999988542221 11235789999999886 111123346788888888865552211 1112457888
Q ss_pred cEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 278 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
+.|.+..+.+.+.....-+...++|+.|.+..+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccc
Confidence 899888887755443444556777888877665
No 19
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.56 E-value=1.7e-08 Score=64.86 Aligned_cols=38 Identities=39% Similarity=0.737 Sum_probs=31.9
Q ss_pred ccCCCChHHHHHHhcCCChhhHHhhhccccchhhhhcc
Q 015025 10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 47 (414)
Q Consensus 10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~~ 47 (414)
.+++||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 36789999999999999999999999999999987654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.47 E-value=1.9e-07 Score=94.92 Aligned_cols=198 Identities=17% Similarity=0.118 Sum_probs=95.7
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
.+..+|+ +.. .....+|..+. ++|+.|++++|.+...+ ...+++|++|+++++.++ .+...+ .+.|+.|
T Consensus 178 ~~~~~L~--L~~--~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELR--LKI--LGLTTIPACIP--EQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLT--SIPATL--PDTIQEM 246 (754)
T ss_pred cCceEEE--eCC--CCcCcCCcccc--cCCcEEEecCCCCCcCC-hhhccCCCEEECCCCccc--cCChhh--hccccEE
Confidence 4555666 432 23345565442 46888888888766543 223457888888887763 122111 2467777
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeeee-cCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
.+++|.. ..+...-.++|+.|+++++. +..+.. -.++|++|.++.+... .++..+ .++|+.|+++++.++.-.
T Consensus 247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCccccCC
Confidence 7777653 22221112467777777553 322222 1246777777643321 111111 235666666655544210
Q ss_pred HHHHhhcCCCCcEEEecCcccccccccc-ccccceEEeccCCCceeeecc-CCccceEEeeecc
Q 015025 292 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP 353 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~-~~~L~~L~l~~c~~L~~l~i~-~~~L~~l~~~~~~ 353 (414)
. ...++|+.|.+.+|... .+... +++|+.|+++++. +..++.. .+.|+.|++.++.
T Consensus 321 --~--~l~~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 321 --E--TLPPGLKTLEAGENALT-SLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNA 378 (754)
T ss_pred --c--cccccceeccccCCccc-cCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCc
Confidence 0 01245666666555221 12111 2355556555542 3222211 2345555555544
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=4.4e-08 Score=87.11 Aligned_cols=191 Identities=22% Similarity=0.272 Sum_probs=98.9
Q ss_pred CCcccceEEEEEEecccCCChhHHHHHHHHHHh--cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCcc
Q 015025 100 LKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFD 177 (414)
Q Consensus 100 ~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 177 (414)
+...+.++.+.-.. ......+|+..+.+ +.+++.++.--+......++|..+... . ..
T Consensus 28 ~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l-------------~--~a 87 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML-------------S--KA 87 (382)
T ss_pred ccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-------------H--HH
Confidence 34566666665442 22367788888776 455555421111122334444432110 0 02
Q ss_pred ccCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeeccCCCce-----------ee----ccCCCCCcEEEeeec
Q 015025 178 SIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKH-----------LC----VSKASKLKIMEIRSF 239 (414)
Q Consensus 178 ~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~~~~~~-----------~~----~~~~~~L~~L~i~~~ 239 (414)
..++|+|++++|+++.+ ....+..+++.|..|++|.|.+|..-.. ++ +.+-+.|+.+....+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34567788888888877 4567788889999999999998853110 00 113356666666555
Q ss_pred c-c--c---ceeeeecCCCeeEEEEEeeCCCCc-e---EEeecCCCCccEEEeeecccchH---HHHHHhhcCCCCcEEE
Q 015025 240 S-E--E---IEIVEISVPSLQQLTLLFYGARRP-R---VVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLF 306 (414)
Q Consensus 240 ~-~--~---l~~~~~~~p~L~~L~l~~~~~~~~-~---~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~ 306 (414)
. . . +.......|.|+.+++.+++.... + ...+..||+|+.|+|..|.++.. .+...++.+|+|+.|.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 4 1 1 111112345666666664333111 0 11234456666666655555432 2233344455555555
Q ss_pred ecCc
Q 015025 307 VTRC 310 (414)
Q Consensus 307 l~~c 310 (414)
+++|
T Consensus 248 l~dc 251 (382)
T KOG1909|consen 248 LGDC 251 (382)
T ss_pred cccc
Confidence 5555
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.42 E-value=1.5e-07 Score=58.22 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=31.6
Q ss_pred CChHHHHHHhcCCChhhHHhhhccccchhhhhcc
Q 015025 14 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 47 (414)
Q Consensus 14 LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~~ 47 (414)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.39 E-value=6.4e-07 Score=90.83 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=61.8
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
.+++.|. +..+ ....+|.. .++|++|++++|.++..+ ...++|+.|++.++.+. .+..+ .+.|+.|
T Consensus 222 ~~L~~L~--L~~N--~Lt~LP~l---p~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~~L 287 (788)
T PRK15387 222 AHITTLV--IPDN--NLTSLPAL---PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLT--HLPAL---PSGLCKL 287 (788)
T ss_pred cCCCEEE--ccCC--cCCCCCCC---CCCCcEEEecCCccCccc--CcccccceeeccCCchh--hhhhc---hhhcCEE
Confidence 3566666 4332 23345542 478999999999877543 23578899988888763 22222 2456777
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEE
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL 259 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~ 259 (414)
.+.+|.. ..+.. ..++|+.|+++++. +..+....++|+.|.+.
T Consensus 288 ~Ls~N~L-t~LP~-~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls 330 (788)
T PRK15387 288 WIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAY 330 (788)
T ss_pred ECcCCcc-ccccc-cccccceeECCCCc--cccCCCCcccccccccc
Confidence 7766642 22221 13567777777663 22222222345555555
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=8.3e-08 Score=85.40 Aligned_cols=216 Identities=18% Similarity=0.154 Sum_probs=139.9
Q ss_pred cccccccEEEEecccccCCc------cccCCCCcceEEceeEEe---chH------HHHHHHhcCCcccEEEeeccCCCc
Q 015025 157 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCL---DEQ------MVQKLASECPLLEDLCFSNCWGLK 221 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~~p~Le~L~l~~~~~~~ 221 (414)
-...+++.++++++.+.... ....-++|+.-++++... .++ .+...+.+||+|++|+|+++..-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34567888999998765432 233445777777776644 122 234446689999999999986421
Q ss_pred e----e--eccCCCCCcEEEeeecc---ccce------------eeeecCCCeeEEEEEeeCCCC----ceEEeecCCCC
Q 015025 222 H----L--CVSKASKLKIMEIRSFS---EEIE------------IVEISVPSLQQLTLLFYGARR----PRVVEVARSPH 276 (414)
Q Consensus 222 ~----~--~~~~~~~L~~L~i~~~~---~~l~------------~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~~~~ 276 (414)
. + -++++..|++|.+.+|. ..-. ...-+.|+|+.+....+-... .....+...|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 1 1 13357899999999997 0001 112356889988887432211 11223556799
Q ss_pred ccEEEeeecccch---HHHHHHhhcCCCCcEEEecCccccc-------cccccccccceEEeccCCC--------ceeee
Q 015025 277 LKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCCLPG-------KIKISSNQLKNLLFRSCKY--------LKVID 338 (414)
Q Consensus 277 L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~~~-------~~~~~~~~L~~L~l~~c~~--------L~~l~ 338 (414)
|+.+.+..+.+.. ..+...+.+||+|+.|+|++|.... .....+++|+.|++++|.- ...+.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 9999999988754 3455668899999999999984322 2233467899999999931 12222
Q ss_pred ccCCccceEEeeecccc--------eEeeecCCccEEEEEEe
Q 015025 339 VDAPNLLLFTYEFNPIP--------IISINVPCPWKVSFVCK 372 (414)
Q Consensus 339 i~~~~L~~l~~~~~~~~--------~~~~~~~~L~~l~i~~~ 372 (414)
-..|.|+.+.+.|+.+. ......|.|++|.+..+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 33678888888887632 12334778888888744
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.20 E-value=9.7e-08 Score=94.94 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=25.8
Q ss_pred eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc
Q 015025 270 EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL 312 (414)
Q Consensus 270 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 312 (414)
.+..++.|+.+|++++.++...+....+. |+|++|+++++..
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 34556677777777776665554443333 6777777777644
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=2.1e-06 Score=87.40 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=127.2
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
.+++.|+ +..+ .-..+|..+. ++|+.|++++|.+...+ ....++|+.|+|++|.+.. ++.-+ ...|+.|
T Consensus 199 ~~L~~L~--Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP-~~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L 267 (754)
T PRK15370 199 EQITTLI--LDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIP-ATLPDTIQEMELSINRITE--LPERL--PSALQSL 267 (754)
T ss_pred cCCcEEE--ecCC--CCCcCChhhc--cCCCEEECCCCccccCC-hhhhccccEEECcCCccCc--CChhH--hCCCCEE
Confidence 4788888 5443 2346776554 58999999999876543 1223579999999998741 22112 2479999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeeeec-CCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEIS-VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
++++|. +..+.-.-.++|+.|++++|. +..+... .++|+.|.++.+... .++.. ..++|+.|++.++.++.-
T Consensus 268 ~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~--Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~--l~~sL~~L~Ls~N~Lt~L- 340 (754)
T PRK15370 268 DLFHNK-ISCLPENLPEELRYLSVYDNS--IRTLPAHLPSGITHLNVQSNSLT-ALPET--LPPGLKTLEAGENALTSL- 340 (754)
T ss_pred ECcCCc-cCccccccCCCCcEEECCCCc--cccCcccchhhHHHHHhcCCccc-cCCcc--ccccceeccccCCccccC-
Confidence 998664 343332223589999998884 3333222 246788888744332 22221 246888888888776541
Q ss_pred HHHHhhcCCCCcEEEecCcccccccccc-ccccceEEeccCCCceeeeccC-CccceEEeeeccc---c----eEeeecC
Q 015025 292 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---P----IISINVP 362 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~-~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~----~~~~~~~ 362 (414)
...+ .++|+.|++++|... .+... .++|+.|++++|. |..++-.. ..|+.+++.++.+ | ......+
T Consensus 341 -P~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 341 -PASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred -Chhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCC
Confidence 1111 368888988887432 22222 3578888888763 44443221 2355555555542 2 1122346
Q ss_pred CccEEEEEE
Q 015025 363 CPWKVSFVC 371 (414)
Q Consensus 363 ~L~~l~i~~ 371 (414)
.+..+.+..
T Consensus 416 ~l~~L~L~~ 424 (754)
T PRK15370 416 QPTRIIVEY 424 (754)
T ss_pred CccEEEeeC
Confidence 777777763
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1.5e-06 Score=75.88 Aligned_cols=182 Identities=17% Similarity=0.153 Sum_probs=131.1
Q ss_pred cCceeeEEEeeeC-CCccccCCccccccccccEEEEecccccCCccc--cCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS--IMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~--~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
..+++++ +..+ -.+..++...+..+++|+.|+|+.|.+..+... ....+|++|.|.+...+.......+...|.+
T Consensus 71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5788888 6433 234456666777899999999999988765421 3556899999999999888888999999999
Q ss_pred cEEEeeccCC----CceeeccC-CCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCC-CCceEEeecCCCCccE
Q 015025 210 EDLCFSNCWG----LKHLCVSK-ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK 279 (414)
Q Consensus 210 e~L~l~~~~~----~~~~~~~~-~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~ 279 (414)
++|+++.+.. ++.-.+.. -+.++.|+...|. .....+....|++..+-+..|+. ..........+|.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999887732 11111111 1678888888887 22233445678999888875433 2223334556788888
Q ss_pred EEeeecccchHHHHHHhhcCCCCcEEEecCccccccc
Q 015025 280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 316 (414)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 316 (414)
|.+..+++...+...-+..||.|..|.+..+|..+.+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 9998888877666677899999999999999776654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.06 E-value=1.3e-06 Score=72.46 Aligned_cols=38 Identities=29% Similarity=0.255 Sum_probs=15.8
Q ss_pred cCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEEecC
Q 015025 272 ARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFVTR 309 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~ 309 (414)
..+|+|+.|++.++.++. ..-..++..+|+|+.|+-..
T Consensus 110 ~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 345666666665554432 12233455666666666554
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.06 E-value=4.5e-08 Score=88.58 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=64.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHH-HHhcCCcccE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQK-LASECPLLED 211 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~-ll~~~p~Le~ 211 (414)
+.+++++ .. ...-..+|..++.+.+|..|++..+.+...+.+.+|..|+.++...+++. .+++ +....+.|..
T Consensus 183 ~~L~~ld--~~--~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 183 KRLKHLD--CN--SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHhcc--cc--hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhccccccee
Confidence 3455555 22 23456777777777777777777777666666777778888887777662 2322 3446778888
Q ss_pred EEeeccCCCceee--ccCCCCCcEEEeeecc
Q 015025 212 LCFSNCWGLKHLC--VSKASKLKIMEIRSFS 240 (414)
Q Consensus 212 L~l~~~~~~~~~~--~~~~~~L~~L~i~~~~ 240 (414)
|++.++.. +++. +.-+.+|..|+++++.
T Consensus 257 LDLRdNkl-ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 257 LDLRDNKL-KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred eecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence 88877753 3322 1124667788888765
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=7.9e-07 Score=87.55 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=108.5
Q ss_pred cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecc-cc-cCC-----ccccCCCCcceEEceeEE-echHHHHHHH
Q 015025 133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWC-RL-EQP-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA 203 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~-~l-~~~-----~~~~~l~~L~~L~L~~~~-~~~~~l~~ll 203 (414)
++++++. +..+.. ....+-.....|+.|+.|++++| .. ... .....+++|+.|++..+. +++..+..+.
T Consensus 188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 6777777 443322 11223345556888888888873 21 111 134567888888888887 5778888888
Q ss_pred hcCCcccEEEeeccCCCceeec----cCCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCC------------
Q 015025 204 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------ 263 (414)
Q Consensus 204 ~~~p~Le~L~l~~~~~~~~~~~----~~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~------------ 263 (414)
..||.||.|.+..|..+....+ ..|++|++|++..|. ..+..+...+|+|+.|.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 8888888888887875433221 247888888888877 11333334567766666542110
Q ss_pred -----CCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCce
Q 015025 264 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 335 (414)
Q Consensus 264 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~ 335 (414)
+.........+++++.+.+..+...+......+..||+|. ..+..+ ...+.+++.|.+..|..+.
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCcccc
Confidence 0111122345566666666555543333334455555552 222111 0112226777777776553
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=2.2e-06 Score=86.45 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=101.5
Q ss_pred ccccEEEEeccccc-CCc---cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 160 NSVTNLRLVWCRLE-QPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 160 ~~L~~L~l~~~~l~-~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
.+|++|++++...- ..+ ....||+|++|.+.+..+..+.+..+..++|+|..|++++++.-.-..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 55777777764321 111 34568999999999998866678888889999999999888643334455677777777
Q ss_pred eeecc-ccceee--eecCCCeeEEEEEeeCCCCceEE------eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025 236 IRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 306 (414)
Q Consensus 236 i~~~~-~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 306 (414)
+.+-. ..-..+ ...+.+|+.|+++.......... .-..+|+|+.||.++..+..+.+..++...|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 76443 110111 12577888888884332111100 0124899999999999998888888888888888887
Q ss_pred ecCc
Q 015025 307 VTRC 310 (414)
Q Consensus 307 l~~c 310 (414)
+-+|
T Consensus 282 ~~~~ 285 (699)
T KOG3665|consen 282 ALDC 285 (699)
T ss_pred hhhh
Confidence 6654
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.97 E-value=3.3e-07 Score=91.32 Aligned_cols=206 Identities=18% Similarity=0.113 Sum_probs=100.2
Q ss_pred ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce-eeccCCCCCcEEEeee
Q 015025 160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEIRS 238 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~-~~~~~~~~L~~L~i~~ 238 (414)
++|+.|....|.+........-.+|++++++.+.++ .+...+..|++||.+.+..+....- ..+....+|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 344444444444432212222346888888887773 3446678899999988877653110 1111123344443333
Q ss_pred cc-ccceeeeecCCCeeEEEEEeeCCC-------------------------CceEEeecCCCCccEEEeeecccchHHH
Q 015025 239 FS-EEIEIVEISVPSLQQLTLLFYGAR-------------------------RPRVVEVARSPHLKKLDLVSVYFADNEF 292 (414)
Q Consensus 239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (414)
|. +.+.........|++|++..+... ......-...+.|+.|.+.++.+++..+
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 32 111111112223333333311110 0000011234567777777777777664
Q ss_pred HHHhhcCCCCcEEEecCcccc---ccccccccccceEEeccCCCceeeec---cCCccceEEeeecc---cceEeeecCC
Q 015025 293 NHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP---IPIISINVPC 363 (414)
Q Consensus 293 ~~~~~~~~~L~~L~l~~c~~~---~~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~---~~~~~~~~~~ 363 (414)
..+.++++||.|+|..+..- .....++..|+.|++++. +|+.++. .++.|+.+..+++. +| ....++.
T Consensus 377 -p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 377 -PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred -hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 45778888888888876221 122233556666666654 2333331 23444444444443 22 2334555
Q ss_pred ccEEEEE
Q 015025 364 PWKVSFV 370 (414)
Q Consensus 364 L~~l~i~ 370 (414)
|+.++++
T Consensus 454 L~~lDlS 460 (1081)
T KOG0618|consen 454 LKVLDLS 460 (1081)
T ss_pred ceEEecc
Confidence 5555554
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.95 E-value=1.1e-06 Score=86.64 Aligned_cols=127 Identities=23% Similarity=0.280 Sum_probs=88.0
Q ss_pred ccccccEEEEecccccCC----ccccCCCCcceEEceeE-Ee---chHHHHHHHhcCCcccEEEeeccCCCceeecc---
Q 015025 158 SANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERV-CL---DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS--- 226 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~--- 226 (414)
.++.|+.|.+.+|..... .....+++|+.|+++++ .. .......+...|++|+.|++.+|..+....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 379999999999853322 25678999999999873 22 33344557788999999999999865543322
Q ss_pred -CCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCCC--CceEEeecCCCCccEEEeee
Q 015025 227 -KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLVS 284 (414)
Q Consensus 227 -~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~ 284 (414)
.|++|+.|.+..|. ..+..+...+|+|++|++++|... .........|++++.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 38999999988887 234445568899999999965442 11111234577777766543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=1.4e-06 Score=72.20 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=18.1
Q ss_pred CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025 273 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 313 (414)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 313 (414)
.+|+|++|.++++.+.+-.-...+..+|+|+.|++.+||..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 46777777777776654222344567788888888887554
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.73 E-value=4.7e-07 Score=72.71 Aligned_cols=151 Identities=16% Similarity=0.104 Sum_probs=82.5
Q ss_pred cccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCc-eeeccCCCCCc
Q 015025 155 AIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCVSKASKLK 232 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~-~~~~~~~~~L~ 232 (414)
.++.+.+.+.|.++++.++..+ ....+.+|+.|++++++++ .+..-++..|.|+.|++..+.... .-.+.++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 4566667777777777765433 4556777777777777763 344446667777777766543211 11123456677
Q ss_pred EEEeeecccc---ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecC
Q 015025 233 IMEIRSFSEE---IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 309 (414)
Q Consensus 233 ~L~i~~~~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (414)
.|++..+.-. +.--...+..|+.|+++++. .+..+-.++++.+|+.|.+..+++.. +..-+..+..|++|++++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 7666655301 11111123445556666322 24445556666777777666655432 111223345577777776
Q ss_pred c
Q 015025 310 C 310 (414)
Q Consensus 310 c 310 (414)
+
T Consensus 183 n 183 (264)
T KOG0617|consen 183 N 183 (264)
T ss_pred c
Confidence 5
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=2.5e-05 Score=68.47 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=101.9
Q ss_pred cccEEEEecccccCCc----cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCC---ceeeccCCCCCc
Q 015025 161 SVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKLK 232 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~---~~~~~~~~~~L~ 232 (414)
.+.-|.+.+|.+.... ....+..++.++|.++.+ +.+.+..++.+.|.|+.|+|+.+... +.+.. ...+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceE
Confidence 4455666677655433 344577899999999999 77889999999999999999877642 33332 246899
Q ss_pred EEEeeecc---ccceeeeecCCCeeEEEEEeeCC---CCceEEeecCCCCccEEEeeeccc-chHHHHHHhhcCCCCcEE
Q 015025 233 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYF-ADNEFNHLISKFPSLEDL 305 (414)
Q Consensus 233 ~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L 305 (414)
.|.+.+.. ...+....+.|.++.|.++.+.. ...-...-+.-+.+++|+...|.. .+.....+..-|||+..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99988876 23333444778888888875422 000111112345777887766643 234456677789999999
Q ss_pred EecCcccc
Q 015025 306 FVTRCCLP 313 (414)
Q Consensus 306 ~l~~c~~~ 313 (414)
.+..||..
T Consensus 205 ~v~e~PlK 212 (418)
T KOG2982|consen 205 FVCEGPLK 212 (418)
T ss_pred eeecCccc
Confidence 99998543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.51 E-value=0.00039 Score=72.44 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=38.4
Q ss_pred ccccEEEEecccccCCccccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEEe
Q 015025 160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI 236 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~i 236 (414)
...+.+.+.++.+........++.|++|-+.++.. -.......+...|.|..|++++|.....+. ++++-+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34555555555443333344555666666655531 011111223446666666666655544432 233445555555
Q ss_pred eec
Q 015025 237 RSF 239 (414)
Q Consensus 237 ~~~ 239 (414)
.++
T Consensus 603 ~~t 605 (889)
T KOG4658|consen 603 SDT 605 (889)
T ss_pred cCC
Confidence 544
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.7e-05 Score=77.59 Aligned_cols=204 Identities=19% Similarity=0.138 Sum_probs=102.1
Q ss_pred hcCCcccceEEEEEEecccCCChhHHHHH--HHHHHhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC
Q 015025 98 CKLKFCIQKFRLFLTFLDVKGSAPIVDRW--IRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP 175 (414)
Q Consensus 98 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~w--~~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 175 (414)
.....++..|+...... .....+... +...+ .+.+.+. +.........-|-.++...+|++|.+.+|.+...
T Consensus 51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~l-qkt~~lk--l~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~ 124 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFL-QKTKVLK--LLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA 124 (1096)
T ss_pred ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHH-hhheeee--ecccCCCCCCCCceeccccceeeEEecCcchhhh
Confidence 34567777777654421 111122211 11112 3555555 4323333333388889999999999999976542
Q ss_pred ccccCCC-CcceE--------------------------------EceeEEechHHHHHHHhcCCcccEEEeeccCCCce
Q 015025 176 FDSIMLC-SLKKL--------------------------------TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH 222 (414)
Q Consensus 176 ~~~~~l~-~L~~L--------------------------------~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~ 222 (414)
.+...++ +|++| +.+.|.. ..++.-+.-.|.|+.|+|+.+...+.
T Consensus 125 ~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v 202 (1096)
T KOG1859|consen 125 KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV 202 (1096)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh
Confidence 2111111 23333 2222222 01111122245666666666654333
Q ss_pred eeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025 223 LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 301 (414)
Q Consensus 223 ~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (414)
-.+..|++|++|+++.+- -.+..+....-.|..|.+.++.. .....+.++.+|+.||+++|-+.+..-...+..+..
T Consensus 203 ~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l--~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~ 280 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL--TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS 280 (1096)
T ss_pred HHHHhcccccccccccchhccccccchhhhhheeeeecccHH--HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHH
Confidence 334446677777766542 11122222122366666663222 112234567777777777776655444444555666
Q ss_pred CcEEEecCcc
Q 015025 302 LEDLFVTRCC 311 (414)
Q Consensus 302 L~~L~l~~c~ 311 (414)
|+.|+|.+||
T Consensus 281 L~~L~LeGNP 290 (1096)
T KOG1859|consen 281 LIVLWLEGNP 290 (1096)
T ss_pred HHHHhhcCCc
Confidence 7778887764
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.36 E-value=0.00011 Score=64.75 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=32.9
Q ss_pred ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccC
Q 015025 271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSC 331 (414)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c 331 (414)
+.-...|++++++++.++.- ..-..-.|.++.|.++.+.....- ....++|..|++++.
T Consensus 280 ~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred cchHhhhhhccccccchhhh--hhhhhhccceeEEeccccceeeehhhhhcccceEeecccc
Confidence 34456677788877766431 122334677777777766322110 223567777777654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.12 E-value=8.1e-05 Score=77.37 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=92.7
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 211 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 211 (414)
+.++.|+ +.. .....++|..+..+-+|++|++++..+...| ....+..|.+|++..+..- +.+..+....++|+.
T Consensus 571 ~~LrVLD--Ls~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 571 PLLRVLD--LSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLRV 646 (889)
T ss_pred cceEEEE--CCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhcccccE
Confidence 4444444 332 2334566666666666666666665554333 4555666666666555431 112344445666777
Q ss_pred EEeeccC-CCceee---ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEee--CC-CCceEEeecCCCCccEEEeee
Q 015025 212 LCFSNCW-GLKHLC---VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFY--GA-RRPRVVEVARSPHLKKLDLVS 284 (414)
Q Consensus 212 L~l~~~~-~~~~~~---~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~--~~-~~~~~~~~~~~~~L~~L~l~~ 284 (414)
|.+.... ..+... +..+.+|+.+++..+...+..-...+++|.++...-. +. .......+..+.+|+.|.+..
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 7665443 111111 1234445544444332100000012333332222100 11 112233456678888888877
Q ss_pred cccchHHHH-----HHhhcCCCCcEEEecCcccccccc--ccccccceEEeccCCCce
Q 015025 285 VYFADNEFN-----HLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLK 335 (414)
Q Consensus 285 ~~~~~~~~~-----~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~L~ 335 (414)
+.+.+.... .....|+++..+.+..|....... .-.|+|+.|.+..|+.++
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 766432110 001125555566666664443332 335677777777775543
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00043 Score=60.16 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=24.5
Q ss_pred cCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeeccC
Q 015025 179 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW 218 (414)
Q Consensus 179 ~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~~ 218 (414)
..||+|++.+|+.+.+ ..+.+..+++....|++|.+++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4566666666666666 334455556666666666666553
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.04 E-value=8e-05 Score=65.49 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEe
Q 015025 182 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLF 260 (414)
Q Consensus 182 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~ 260 (414)
..|+.++|+.+.++ .++.-..-.|.++.|+++.+.....-.+..+++|+.|+++++. ....-+...+-|.++|.+..
T Consensus 284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34666666666552 1111122356666666665544322223345666666666553 22222233445556665552
Q ss_pred eCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 261 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
+.. + ....++.+=+|..|++.++++..-.-.+-+.++|.|+.|.+.++|
T Consensus 362 N~i-E-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKI-E-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhH-h-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 111 1 111223344566666666665543333445566666666666653
No 43
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.94 E-value=1.5e-05 Score=64.29 Aligned_cols=117 Identities=18% Similarity=0.079 Sum_probs=55.4
Q ss_pred cccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccC
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK 227 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~ 227 (414)
-.++|..+.+++.|+.|+++-+++...+ +++.||.|+.|+|..++.++..+..-+..+
T Consensus 68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m--------------------- 126 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM--------------------- 126 (264)
T ss_pred hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHH---------------------
Confidence 3455555555555555555544443333 445555555555555544333333222222
Q ss_pred CCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025 228 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 288 (414)
Q Consensus 228 ~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (414)
..|+.|.++++. +.+..-.-.+.+|+.|.+.++.. -..+..++.+.+|++|++.+++++
T Consensus 127 -~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 127 -TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred -HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee
Confidence 344444444443 11111111334445444442221 234445566778888888877654
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.88 E-value=0.00036 Score=70.75 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=46.7
Q ss_pred hcCceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCC
Q 015025 132 ENGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECP 207 (414)
Q Consensus 132 ~~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p 207 (414)
+.++++|+ +.+........|..++. +|+|++|.+.+-.+.... ...+||+|+.|++++++++.- ..++..+
T Consensus 121 r~nL~~Ld--I~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLD--ISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HHhhhhcC--ccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 35555555 44332223333333333 455666665554432221 234556666666665555221 2344555
Q ss_pred cccEEEeeccCCCcee---eccCCCCCcEEEeeec
Q 015025 208 LLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF 239 (414)
Q Consensus 208 ~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~ 239 (414)
+|+.|.+.+-+..... .+-++++|+.|+|+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 5555555443322111 1223455555555543
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.86 E-value=0.0022 Score=60.23 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=38.7
Q ss_pred CcccEEEeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc
Q 015025 207 PLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 286 (414)
Q Consensus 207 p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (414)
+.|++|.+.+|..+..+. ++|+.|.+.... ...+..-.++|+.|.+..............-.++|+.|.+.++.
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~--~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLP----ESVRSLEIKGSA--TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred hhhhheEccCcccccccc----cccceEEeCCCC--CcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 356666666664443221 356666654321 22222223456666553111000000000012467777776554
Q ss_pred cchHHHHHHhhcC-CCCcEEEecC
Q 015025 287 FADNEFNHLISKF-PSLEDLFVTR 309 (414)
Q Consensus 287 ~~~~~~~~~~~~~-~~L~~L~l~~ 309 (414)
... ....+ .+|+.|.+..
T Consensus 168 ~i~-----LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 168 NII-----LPEKLPESLQSITLHI 186 (426)
T ss_pred ccc-----CcccccccCcEEEecc
Confidence 321 11112 3577777654
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.84 E-value=0.00017 Score=48.69 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=15.1
Q ss_pred cccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025 161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~ 194 (414)
+|++|++++|.+...+ .+.++++|++|+++++.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence 3455555555433222 233444455554444443
No 47
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.77 E-value=7.2e-06 Score=74.67 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=16.2
Q ss_pred HHhHHHHhccCcceeEEEEEEEE
Q 015025 380 YLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 380 ~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
+..++..++++++|++|.+..++
T Consensus 517 lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 517 LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhCChhhccccceeEEEecCCc
Confidence 45566778888888877776554
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.75 E-value=9e-05 Score=67.56 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=40.2
Q ss_pred CceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc--cccCCCCcceEEcee-EEe
Q 015025 134 GVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL 194 (414)
Q Consensus 134 ~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~-~~~ 194 (414)
...++. +. ...-..+|...|. .++|+.|+|++|.+.... .+.++++|.+|.+.+ +.+
T Consensus 68 ~tveir--Ld--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIR--LD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEE--ec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 444555 43 2345677877776 789999999998865433 677888888888887 555
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=9.9e-05 Score=64.25 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025 228 ASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 305 (414)
Q Consensus 228 ~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 305 (414)
+.+.+.|+.++|. +..+ ...+|.|+.|.++-+.. .....+..|.+|++|.|..|.+.+-.-...+.++|+|++|
T Consensus 18 l~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC--ccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3466677777774 4433 34788999998883222 2334567899999999999998886667789999999999
Q ss_pred EecCcccccccc--------ccccccceEE
Q 015025 306 FVTRCCLPGKIK--------ISSNQLKNLL 327 (414)
Q Consensus 306 ~l~~c~~~~~~~--------~~~~~L~~L~ 327 (414)
+|..||-...-+ ...|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999875544322 2367777774
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.66 E-value=0.0066 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=13.7
Q ss_pred cccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025 208 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 239 (414)
Q Consensus 208 ~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 239 (414)
.|++|.+.+|..+..+.-.-.++|+.|.+.+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 35555555554433222110135555555554
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.64 E-value=0.00038 Score=46.97 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=18.3
Q ss_pred cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
..+++|+.|+++++.+..-. ...+..+++|++|++++|
T Consensus 22 ~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 34555555555555443211 123445555555555554
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.48 E-value=0.00029 Score=64.38 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=49.4
Q ss_pred CCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee
Q 015025 146 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL 223 (414)
Q Consensus 146 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~ 223 (414)
...-.++|..+. +.-+.++|..|.++..+ .+..+++|++|+|+.+.++.-...+ +.+.+.|-+|.+-+++.++++
T Consensus 55 ~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 55 GKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhh
Confidence 334455555443 24577888888876654 6789999999999999984322222 345677777777775555544
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.47 E-value=0.0017 Score=56.64 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=39.5
Q ss_pred HHHHHHHHHHh--cCceeeEEEeeeCCCccccCCc-------cccccccccEEEEecccccCCc------cccCCCCcce
Q 015025 122 IVDRWIRLAVE--NGVRELDFENITDENTVYTLPQ-------AIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKK 186 (414)
Q Consensus 122 ~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~-------~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~ 186 (414)
....|+...++ ++++..+|+=.+......+++. .+..|++|+..+|+.|.+.... ....-..|++
T Consensus 45 EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~H 124 (388)
T COG5238 45 EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVH 124 (388)
T ss_pred HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCcee
Confidence 67788887766 4555555221111222333333 2345777777777776654322 2233456777
Q ss_pred EEceeEEe
Q 015025 187 LTLERVCL 194 (414)
Q Consensus 187 L~L~~~~~ 194 (414)
|.+++|-+
T Consensus 125 L~l~NnGl 132 (388)
T COG5238 125 LKLNNNGL 132 (388)
T ss_pred EEeecCCC
Confidence 77777655
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.00039 Score=60.18 Aligned_cols=108 Identities=23% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCccccccccccEEEEecccccCCccccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCC--Cceee-ccC
Q 015025 152 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLC-VSK 227 (414)
Q Consensus 152 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~--~~~~~-~~~ 227 (414)
+....-....|+.|++.++.++....+..+|+||+|.++.++. ....+..++..||+|++|+++++.. +..+. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3333334567788888888777655677788999999999855 3345666677889999999998864 12211 224
Q ss_pred CCCCcEEEeeecc-ccce----eeeecCCCeeEEEEE
Q 015025 228 ASKLKIMEIRSFS-EEIE----IVEISVPSLQQLTLL 259 (414)
Q Consensus 228 ~~~L~~L~i~~~~-~~l~----~~~~~~p~L~~L~l~ 259 (414)
+++|.+|.+..|. .++. .+..-+|+|++|+-.
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 5678888887776 1111 112245666665544
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.38 E-value=0.0018 Score=62.00 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
+.+++++.|+++.+.+++... +....+++.|+++++
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccceecccccccccccc---ccccCccCEEeccCc
Confidence 344445555555444433211 334445555555443
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.10 E-value=0.0018 Score=57.81 Aligned_cols=37 Identities=30% Similarity=0.613 Sum_probs=34.8
Q ss_pred cccccCCCC----hHHHHHHhcCCChhhHHhhhccccchhh
Q 015025 7 AMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ 43 (414)
Q Consensus 7 ~~d~i~~LP----devL~~I~s~L~~~~~~~~~~vskrWr~ 43 (414)
+.|-|+.|| |++...|||||+..+++.+-.|||+|++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 368899999 9999999999999999999999999986
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.07 E-value=0.0031 Score=60.48 Aligned_cols=167 Identities=19% Similarity=0.112 Sum_probs=107.0
Q ss_pred ccccccEEEEecccccCCccccCCC--CcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeecc-CCCCCcEE
Q 015025 158 SANSVTNLRLVWCRLEQPFDSIMLC--SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIM 234 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~~~~~~l~--~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~-~~~~L~~L 234 (414)
..+.++.|.+.++.+...+...... +|+.|+++++.+.. +..-+..+|.|+.|.+.+|+........ ..+.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3467888888888776655334443 89999999988742 2233567999999999888753332222 46889999
Q ss_pred Eeeeccccceeeee--cCCC-eeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 235 EIRSFSEEIEIVEI--SVPS-LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 235 ~i~~~~~~l~~~~~--~~p~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
.++++. +..+.. ..++ |+++.++.+. .......+..+.++..+.+..+.+... .......++++.|++..+.
T Consensus 192 ~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 192 DLSGNK--ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eccCCc--cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec--cchhccccccceecccccc
Confidence 998884 444433 2444 8888888432 222333445677777777666655431 2445677889999999873
Q ss_pred ccccc-cccccccceEEeccC
Q 015025 312 LPGKI-KISSNQLKNLLFRSC 331 (414)
Q Consensus 312 ~~~~~-~~~~~~L~~L~l~~c 331 (414)
....- .....+++.|++++-
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccccCccCEEeccCc
Confidence 22211 334567888877664
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.02 E-value=0.0075 Score=50.36 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=44.7
Q ss_pred ccccccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCce-----eeccCCC
Q 015025 158 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH-----LCVSKAS 229 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~-----~~~~~~~ 229 (414)
..++|.+|.+++|+++... ....+|+|++|.|.++.+ .-+.++.+ ..||.|++|.+.+++..+. ..+..+|
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4567777777777655432 334567777777777766 33444443 3477777777766653211 1222345
Q ss_pred CCcEEEee
Q 015025 230 KLKIMEIR 237 (414)
Q Consensus 230 ~L~~L~i~ 237 (414)
+|+.|+..
T Consensus 141 ~l~~LDF~ 148 (233)
T KOG1644|consen 141 SLRTLDFQ 148 (233)
T ss_pred cceEeehh
Confidence 55555544
No 59
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=95.99 E-value=0.011 Score=31.91 Aligned_cols=25 Identities=48% Similarity=0.832 Sum_probs=22.2
Q ss_pred CcceEEceeEEe-chHHHHHHHhcCC
Q 015025 183 SLKKLTLERVCL-DEQMVQKLASECP 207 (414)
Q Consensus 183 ~L~~L~L~~~~~-~~~~l~~ll~~~p 207 (414)
+||+|+|..+.+ +++.++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5568999999998
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0013 Score=56.91 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=40.7
Q ss_pred CCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccch--HHHHHHhhcC
Q 015025 227 KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKF 299 (414)
Q Consensus 227 ~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 299 (414)
.+|+||.|.++.+. ..+......+|+|+++.++.+.... ...-.+..+.+|..|++..+..+. +.-.+++..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 45666666666552 2333334455677766666322211 011112345566666666554332 2223344555
Q ss_pred CCCcEEEecCc
Q 015025 300 PSLEDLFVTRC 310 (414)
Q Consensus 300 ~~L~~L~l~~c 310 (414)
|+|+.|+-.++
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 66666655544
No 61
>PLN03150 hypothetical protein; Provisional
Probab=95.70 E-value=0.012 Score=59.76 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCcEEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEe
Q 015025 230 KLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 307 (414)
Q Consensus 230 ~L~~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 307 (414)
.++.|++.++. ..+..-...+++|+.|+++.+.....++..++.+++|+.|+++++.+++.. ...+.++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence 36777777664 112222236788999999865555556656788999999999998887544 334677899999999
Q ss_pred cCcccccccccc----ccccceEEeccCCCc
Q 015025 308 TRCCLPGKIKIS----SNQLKNLLFRSCKYL 334 (414)
Q Consensus 308 ~~c~~~~~~~~~----~~~L~~L~l~~c~~L 334 (414)
++|.....+... ..++..+++.+++.+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 988544433322 224445566555443
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.57 E-value=0.0058 Score=54.25 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=31.1
Q ss_pred ccccCCCChHHHHHHhc-----CCChhhHHhhhccccchhh
Q 015025 8 MDRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ 43 (414)
Q Consensus 8 ~d~i~~LPdevL~~I~s-----~L~~~~~~~~~~vskrWr~ 43 (414)
-+.|..||||||..||. .++.+++.++|+|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 34578999999999996 5677999999999999984
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.57 E-value=0.035 Score=46.47 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=63.2
Q ss_pred ccccEEEEecccccCCccccCCCCcceEEceeEEec--hHHHHHHHhcCCcccEEEeeccCC--Ccee-eccCCCCCcEE
Q 015025 160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWG--LKHL-CVSKASKLKIM 234 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~~p~Le~L~l~~~~~--~~~~-~~~~~~~L~~L 234 (414)
.....++|+.+.+.....+..++.|.+|.|.++.++ +..+. ...|+|..|.+.++.. ++++ ...+||+|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345667777777666556777888999999988873 22333 3467788888877653 1111 22346666666
Q ss_pred EeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025 235 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 288 (414)
Q Consensus 235 ~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (414)
++-+++ .. ....+....+-.+|+|+.||+....-.
T Consensus 119 tll~Np--v~-----------------~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 119 TLLGNP--VE-----------------HKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred eecCCc--hh-----------------cccCceeEEEEecCcceEeehhhhhHH
Confidence 665554 00 001112223346788888887665443
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.54 E-value=0.0058 Score=37.96 Aligned_cols=15 Identities=47% Similarity=0.468 Sum_probs=7.5
Q ss_pred HhcCCcccEEEeecc
Q 015025 203 ASECPLLEDLCFSNC 217 (414)
Q Consensus 203 l~~~p~Le~L~l~~~ 217 (414)
+.++++|+.|++++|
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 344555555555544
No 65
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=95.33 E-value=0.017 Score=37.20 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=32.9
Q ss_pred cCCccEEEEE-EeeecchhHHHhHHHHhccCcceeEEEEEE
Q 015025 361 VPCPWKVSFV-CKGVLNTHWYLKLKKFLGVSKQIESLKLSL 400 (414)
Q Consensus 361 ~~~L~~l~i~-~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~ 400 (414)
.++|+.+.+. +.|..++ +..++++++|++.|+++.|++
T Consensus 13 ~s~Lk~v~~~~f~g~~~e--~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENE--LEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred hheeEEEEEEeeeCcHHH--HHHHHHHHhhhhhhcEEEEEC
Confidence 4689999998 7777777 899999999999999999863
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.0045 Score=51.63 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=60.1
Q ss_pred cCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCceeec--
Q 015025 151 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCV-- 225 (414)
Q Consensus 151 ~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~-- 225 (414)
.+|..-..-..++.++-+++.+.... ....++.++.|.+.+|.. ++..+..+-.-.|+|+.|.|++|+.+++-.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 44443222234555555555433221 356678888888888877 8888888888889999999999988766432
Q ss_pred -cCCCCCcEEEeeecc
Q 015025 226 -SKASKLKIMEIRSFS 240 (414)
Q Consensus 226 -~~~~~L~~L~i~~~~ 240 (414)
..+++|+.|.+.+-+
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 346777777776443
No 67
>PLN03150 hypothetical protein; Provisional
Probab=94.44 E-value=0.037 Score=56.27 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=55.7
Q ss_pred CeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEe
Q 015025 252 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLF 328 (414)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l 328 (414)
.++.|.+..++.....+..+..+++|+.|+|+++.+.+.. ...+..+++|+.|+|++|.....+ ...+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3667777755554455556778889999999888776543 233577889999999988544333 334678888888
Q ss_pred ccCC
Q 015025 329 RSCK 332 (414)
Q Consensus 329 ~~c~ 332 (414)
+++.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 8764
No 68
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.14 E-value=0.031 Score=52.03 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=33.2
Q ss_pred cCCCChHHHHHHhcCCC-hhhHHhhhccccchhhhhcc
Q 015025 11 ISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS 47 (414)
Q Consensus 11 i~~LPdevL~~I~s~L~-~~~~~~~~~vskrWr~lw~~ 47 (414)
.++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999996 77999999999999986544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.0035 Score=54.88 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=47.9
Q ss_pred ccccccEEEEecccccCCccccCCCCcceEEceeEEec-hHHHHHHHhcCCcccEEEeeccCCCce-------eeccCCC
Q 015025 158 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKH-------LCVSKAS 229 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~Le~L~l~~~~~~~~-------~~~~~~~ 229 (414)
.++.|+.|.|+-|.+........|.+|+.|.|..+.+. -..+. .+.+.|+|+.|-|..++..+. .-+.-+|
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 45667777777776665445667777777777777772 22332 356778888877777665321 1122467
Q ss_pred CCcEEE
Q 015025 230 KLKIME 235 (414)
Q Consensus 230 ~L~~L~ 235 (414)
+|+.|+
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 777764
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.89 E-value=0.071 Score=33.02 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
++|+.|+++++.+++- ...+.++++|+.|++++|
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence 4677888888777652 223677888888888876
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.63 E-value=0.0056 Score=59.05 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=17.3
Q ss_pred cccccEEEEecccccCCcc-ccCCCCcceEEceeEEe
Q 015025 159 ANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL 194 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~L~~~~~ 194 (414)
+++|+.|++..+.+..... ...+++|+.|+++++.+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I 130 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI 130 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccc
Confidence 4445555555554443332 34455555555555544
No 72
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=93.03 E-value=0.11 Score=36.09 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=33.2
Q ss_pred cCCccEEEEE-EeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 361 VPCPWKVSFV-CKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 361 ~~~L~~l~i~-~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
.++|+.+.|. +.|..++ ++.+++++++++.|++++|....
T Consensus 4 ~~~Lk~v~i~~f~g~~~e--~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEE--KELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred hheEEEEEEEeccCcHHH--HHHHHHHHhcchhheEEEEEeec
Confidence 4578999998 5555556 89999999999999999998865
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.017 Score=48.31 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=18.6
Q ss_pred CCCCccEEEeeeccc-chHHHHHHhhcCCCCcEEEecCcccccc
Q 015025 273 RSPHLKKLDLVSVYF-ADNEFNHLISKFPSLEDLFVTRCCLPGK 315 (414)
Q Consensus 273 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 315 (414)
.++.++.|.+..+.. .+..+..+..-.|+|+.|+|++|+.++.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 344444444443332 2233333333444555555555544443
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.53 E-value=0.0047 Score=59.41 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=77.5
Q ss_pred cCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce-eeccCC
Q 015025 151 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKA 228 (414)
Q Consensus 151 ~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~-~~~~~~ 228 (414)
.+|..+.+...|++|+|+.+.+...+ ....|| |+.|.+++++++. +..-+...+.|..|+.+.|....- -.+..+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 44455555556666666665544333 222333 6666666665521 111122345555555555542111 112234
Q ss_pred CCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHH--hhcCCCCcEE
Q 015025 229 SKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL--ISKFPSLEDL 305 (414)
Q Consensus 229 ~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L 305 (414)
.+|+.|.+..+. ..+..-.. .-.|..|+++ |.....+++.+..+..|+.|.|.+|-+..-. .++ -....-.|+|
T Consensus 189 ~slr~l~vrRn~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPP-AqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPP-AQICEKGKVHIFKYL 265 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCCh-HHHHhccceeeeeee
Confidence 566666666554 11111111 2346777777 5555667777777888888888777654321 111 1223346667
Q ss_pred EecCc
Q 015025 306 FVTRC 310 (414)
Q Consensus 306 ~l~~c 310 (414)
..+-|
T Consensus 266 ~~qA~ 270 (722)
T KOG0532|consen 266 STQAC 270 (722)
T ss_pred cchhc
Confidence 77666
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.45 E-value=0.03 Score=55.75 Aligned_cols=143 Identities=21% Similarity=0.228 Sum_probs=81.1
Q ss_pred cccccEEEEecccccCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEe-----------eccCC----
Q 015025 159 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCF-----------SNCWG---- 219 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l-----------~~~~~---- 219 (414)
.++++.|++-...-..+. ....|.+||+|.+.+|.+ ...++..+- .+||+|.- ..|.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 456666776654433322 455788999999999988 322332221 12333321 11111
Q ss_pred ----------------Ccee--eccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccE
Q 015025 220 ----------------LKHL--CVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKK 279 (414)
Q Consensus 220 ----------------~~~~--~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 279 (414)
+..+ .+.-+|.|++|+++.+. ++.+ ...+|.|++|+++++....-......+|. |..
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhhHHHHhcccccccccccchhccccccchhhhh-hee
Confidence 0000 01125788888888774 3332 23788899999885443222222223344 888
Q ss_pred EEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
|.+.+|.++. ...+.++.+|+.|+++.|
T Consensus 237 L~lrnN~l~t---L~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 237 LNLRNNALTT---LRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred eeecccHHHh---hhhHHhhhhhhccchhHh
Confidence 8888877644 223567888999999876
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.07 E-value=0.058 Score=52.06 Aligned_cols=127 Identities=22% Similarity=0.088 Sum_probs=76.0
Q ss_pred cccccccEEEEecccccC-CccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 157 FSANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
..+..++.+.+..+.+.. ......+.+|+.|++.++.+. .+...+..+++|+.|+++++....-..+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 345666777777666554 224677888999999988872 23333566889999999888654444444566788888
Q ss_pred eeeccccceeeee--cCCCeeEEEEEeeCCCCceEEe-ecCCCCccEEEeeecccc
Q 015025 236 IRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVE-VARSPHLKKLDLVSVYFA 288 (414)
Q Consensus 236 i~~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 288 (414)
+.++. +..+.. ..++|+.++++++.... +.-. ...+.+++.+.+.++.+.
T Consensus 147 l~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNL--ISDISGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCc--chhccCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh
Confidence 88775 222221 25566666666332211 1110 245666666666665543
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.97 E-value=0.14 Score=50.71 Aligned_cols=39 Identities=26% Similarity=0.542 Sum_probs=36.2
Q ss_pred ccccccCCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025 6 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44 (414)
Q Consensus 6 ~~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l 44 (414)
...|-|+.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457899999999999999999999999999999999864
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.34 E-value=0.02 Score=55.29 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=28.4
Q ss_pred ccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccC
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 218 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~ 218 (414)
..+|..++.| -|+.|-++++.++..+ ..+..+.|..|+.+.|.+ ..+..=+.+...|+.|.+..+.
T Consensus 134 S~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 134 SHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhh
Confidence 3444444444 2555555555443322 233445555555555543 1222223334444454444443
No 79
>PF13013 F-box-like_2: F-box-like domain
Probab=88.69 E-value=0.26 Score=37.26 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=27.4
Q ss_pred ccCCCChHHHHHHhcCCChhhHHhhhcccc
Q 015025 10 RISELPTFIIHHLMSYLSAKEVARTSVLSK 39 (414)
Q Consensus 10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vsk 39 (414)
.+.+||+|++..||.+-+..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988888887
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.31 E-value=0.31 Score=38.09 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=3.8
Q ss_pred cCCcccEEEee
Q 015025 205 ECPLLEDLCFS 215 (414)
Q Consensus 205 ~~p~Le~L~l~ 215 (414)
+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 34455555543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.86 E-value=0.61 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=11.6
Q ss_pred CCcceEEceeEEechHHHHHH
Q 015025 182 CSLKKLTLERVCLDEQMVQKL 202 (414)
Q Consensus 182 ~~L~~L~L~~~~~~~~~l~~l 202 (414)
++|++|+|+++.++++....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566667776666655555543
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.84 E-value=0.74 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=8.4
Q ss_pred CCcceEEceeEEe-chHHHHH
Q 015025 182 CSLKKLTLERVCL-DEQMVQK 201 (414)
Q Consensus 182 ~~L~~L~L~~~~~-~~~~l~~ 201 (414)
++|+.|++++|.. ++.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 3444444444432 4444443
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.62 E-value=0.6 Score=36.43 Aligned_cols=10 Identities=0% Similarity=0.258 Sum_probs=4.0
Q ss_pred cccccEEEEe
Q 015025 159 ANSVTNLRLV 168 (414)
Q Consensus 159 ~~~L~~L~l~ 168 (414)
|.+|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 5556666554
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.22 E-value=1.6 Score=20.70 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=6.6
Q ss_pred cccEEEEeccccc
Q 015025 161 SVTNLRLVWCRLE 173 (414)
Q Consensus 161 ~L~~L~l~~~~l~ 173 (414)
+|+.|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5667777776544
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=72.81 E-value=0.91 Score=35.91 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=35.7
Q ss_pred cccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCC
Q 015025 159 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL 220 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~ 220 (414)
-..|+..+|++|.+...+ ....+|.+++|++.++.+++-..+ +..+|.|+.|++..++..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 345556667776655433 334566777777777776432222 455777777777766543
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=68.72 E-value=3.6 Score=20.87 Aligned_cols=9 Identities=33% Similarity=0.180 Sum_probs=3.5
Q ss_pred CcEEEecCc
Q 015025 302 LEDLFVTRC 310 (414)
Q Consensus 302 L~~L~l~~c 310 (414)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 333444333
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.77 E-value=5.5 Score=21.67 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=14.1
Q ss_pred CCcceEEceeEEechHHHHHH
Q 015025 182 CSLKKLTLERVCLDEQMVQKL 202 (414)
Q Consensus 182 ~~L~~L~L~~~~~~~~~l~~l 202 (414)
++|++|+|+++.++++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 467777777777766665554
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=58.41 E-value=7.6 Score=34.23 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=37.5
Q ss_pred cccccCCCChHHHHHHhcCCC-hhhHHhhhccccch------hhhhcccCeEEeeCC
Q 015025 7 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKW------NQLYVSFPILDFDQN 56 (414)
Q Consensus 7 ~~d~i~~LPdevL~~I~s~L~-~~~~~~~~~vskrW------r~lw~~~~~l~~~~~ 56 (414)
.+-.+.+||.+++..|+.+|+ .+|+..++.|--.- +.+|+..-...|...
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 355789999999999999998 99999998874433 356776655555443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.07 E-value=4.2 Score=39.74 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=34.8
Q ss_pred cCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCC--Cceeecc--CCCCCcEEEeeecc
Q 015025 179 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLCVS--KASKLKIMEIRSFS 240 (414)
Q Consensus 179 ~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~--~~~~~~~--~~~~L~~L~i~~~~ 240 (414)
..+|.+..++|+++++ .-+.+..+....|+|..|+|+++.. .....+. +...|++|-+.+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 4566666666766666 5556666666677777777766622 1111111 12456666666554
No 90
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=52.71 E-value=10 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred cccCCCChHHHHHHhcCCChhhHHh
Q 015025 9 DRISELPTFIIHHLMSYLSAKEVAR 33 (414)
Q Consensus 9 d~i~~LPdevL~~I~s~L~~~~~~~ 33 (414)
..+..||.|+-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 4678999999999999999999864
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=45.38 E-value=1.2 Score=35.29 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=23.5
Q ss_pred CCCcEEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeeccc
Q 015025 229 SKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 287 (414)
Q Consensus 229 ~~L~~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (414)
..|+..+++++. .....+....|..+.|.+..+. ...++..+..+|.|+.|++..+.+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCcc
Confidence 345555555543 1111223334444444444211 122333344445555555544443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.08 E-value=14 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=16.1
Q ss_pred CCccEEEeeecccch------HHHHHHhhcCCCCcEEE
Q 015025 275 PHLKKLDLVSVYFAD------NEFNHLISKFPSLEDLF 306 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~ 306 (414)
.-|++|.+.||-+.. ..+..+-..||+|..|+
T Consensus 270 l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 456666666654322 22334444566665554
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=33.18 E-value=22 Score=18.60 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.7
Q ss_pred CCcceEEceeEEe
Q 015025 182 CSLKKLTLERVCL 194 (414)
Q Consensus 182 ~~L~~L~L~~~~~ 194 (414)
++|++|+|+++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455555555544
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=33.18 E-value=22 Score=18.60 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.7
Q ss_pred CCcceEEceeEEe
Q 015025 182 CSLKKLTLERVCL 194 (414)
Q Consensus 182 ~~L~~L~L~~~~~ 194 (414)
++|++|+|+++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455555555544
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=31.05 E-value=69 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=34.7
Q ss_pred cCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeecc
Q 015025 179 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 179 ~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~ 240 (414)
..|.+|+.-++++..++...+...-.-|.++|--.|.+|+.-+.-.+. .+|+--++.++.
T Consensus 168 L~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfedps~~k--aNLeganLkG~~ 227 (302)
T KOG1665|consen 168 LQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFEDPSGLK--ANLEGANLKGAD 227 (302)
T ss_pred hhhhhhcccccccchhhhhhhhhhhheecccccccccCcCCCCccchh--cccccccccccc
Confidence 456677777777776655555555555777777777777643322222 245544444443
No 96
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=30.62 E-value=14 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025 11 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44 (414)
Q Consensus 11 i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l 44 (414)
...+|++++..|++++..+++.++|.|++|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4679999999999999999999999999999864
Done!