Query 015025
Match_columns 414
No_of_seqs 195 out of 2321
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 8.5E-26 2.9E-30 226.5 12.2 200 7-218 5-231 (592)
2 2p1m_B Transport inhibitor res 99.9 8.3E-27 2.9E-31 233.9 3.2 38 7-44 2-40 (594)
3 2ast_B S-phase kinase-associat 99.9 2E-24 6.9E-29 201.0 2.3 38 8-45 6-43 (336)
4 4fmz_A Internalin; leucine ric 99.6 2.4E-15 8.2E-20 140.2 11.1 81 156-239 84-165 (347)
5 4fcg_A Uncharacterized protein 99.6 7E-15 2.4E-19 135.8 12.8 198 131-336 79-292 (328)
6 2p1m_B Transport inhibitor res 99.6 9.9E-16 3.4E-20 153.3 6.3 84 132-217 129-221 (594)
7 3ogk_B Coronatine-insensitive 99.6 1.5E-15 5.2E-20 151.9 6.2 226 102-330 73-351 (592)
8 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.4E-20 139.4 6.3 175 160-334 70-260 (336)
9 4fmz_A Internalin; leucine ric 99.5 2.5E-14 8.4E-19 133.3 11.6 253 133-402 44-322 (347)
10 4fcg_A Uncharacterized protein 99.5 2.1E-14 7.1E-19 132.7 10.5 205 159-370 80-309 (328)
11 3rgz_A Protein brassinosteroid 99.5 4.9E-15 1.7E-19 152.6 6.1 218 150-370 90-326 (768)
12 1o6v_A Internalin A; bacterial 99.5 7.8E-14 2.7E-18 135.3 13.7 234 156-402 108-386 (466)
13 3t6q_A CD180 antigen; protein- 99.5 3.5E-15 1.2E-19 149.7 0.6 80 272-353 422-511 (606)
14 3rgz_A Protein brassinosteroid 99.5 1.6E-14 5.6E-19 148.7 5.4 174 157-331 197-378 (768)
15 1o6v_A Internalin A; bacterial 99.5 1.6E-13 5.5E-18 133.1 11.8 247 133-401 68-341 (466)
16 2id5_A Lingo-1, leucine rich r 99.5 2.1E-14 7.1E-19 139.8 5.2 215 153-370 73-328 (477)
17 3bz5_A Internalin-J, INLJ; leu 99.5 5E-14 1.7E-18 136.0 7.2 158 133-310 85-243 (457)
18 2id5_A Lingo-1, leucine rich r 99.5 5.3E-14 1.8E-18 136.9 6.5 257 133-402 32-307 (477)
19 3v47_A TOLL-like receptor 5B a 99.4 1.5E-14 5E-19 140.0 2.4 120 275-401 275-405 (455)
20 3vq2_A TLR4, TOLL-like recepto 99.4 2.7E-14 9.2E-19 143.3 4.1 210 156-370 281-505 (606)
21 3o6n_A APL1; leucine-rich repe 99.4 1.3E-13 4.5E-18 130.5 7.9 247 133-401 69-349 (390)
22 1z7x_W Ribonuclease inhibitor; 99.4 5E-14 1.7E-18 136.5 4.7 151 249-401 225-408 (461)
23 2z63_A TOLL-like receptor 4, v 99.4 5.3E-14 1.8E-18 140.0 3.8 240 151-401 273-528 (570)
24 1z7x_W Ribonuclease inhibitor; 99.4 2.2E-14 7.5E-19 139.0 0.7 266 131-400 26-350 (461)
25 3g06_A SSPH2 (leucine-rich rep 99.4 3E-13 1E-17 134.7 8.9 214 159-401 80-294 (622)
26 4eco_A Uncharacterized protein 99.4 1.3E-13 4.5E-18 138.8 6.0 123 133-259 206-361 (636)
27 3bz5_A Internalin-J, INLJ; leu 99.4 9E-13 3.1E-17 127.2 11.6 203 156-372 81-296 (457)
28 2z7x_B TOLL-like receptor 1, v 99.4 1.1E-12 3.8E-17 129.0 12.3 149 248-402 321-479 (520)
29 3t6q_A CD180 antigen; protein- 99.4 1.6E-13 5.3E-18 137.7 5.9 240 151-399 268-531 (606)
30 3v47_A TOLL-like receptor 5B a 99.4 1.1E-13 3.7E-18 133.9 4.5 261 133-401 54-381 (455)
31 3oja_B Anopheles plasmodium-re 99.4 6.2E-13 2.1E-17 133.0 10.1 231 155-402 94-356 (597)
32 4ecn_A Leucine-rich repeat pro 99.4 2.7E-13 9.3E-18 139.7 7.1 150 133-287 448-631 (876)
33 3o53_A Protein LRIM1, AGAP0063 99.4 1.3E-13 4.5E-18 126.7 3.4 165 133-310 34-201 (317)
34 2z81_A CD282 antigen, TOLL-lik 99.4 3E-12 1E-16 126.8 13.2 172 133-310 26-206 (549)
35 2z7x_B TOLL-like receptor 1, v 99.4 1E-12 3.6E-17 129.2 9.6 260 133-402 45-385 (520)
36 3oja_A Leucine-rich immune mol 99.4 2E-13 6.9E-18 132.9 4.2 202 161-371 35-246 (487)
37 2z66_A Variable lymphocyte rec 99.4 2.1E-13 7E-18 124.7 3.9 219 149-370 19-256 (306)
38 2z81_A CD282 antigen, TOLL-lik 99.4 5.6E-13 1.9E-17 132.0 7.2 148 250-401 195-397 (549)
39 3o6n_A APL1; leucine-rich repe 99.4 2.4E-12 8.1E-17 121.9 11.2 229 133-372 93-349 (390)
40 1ogq_A PGIP-2, polygalacturona 99.4 3.3E-13 1.1E-17 123.8 4.4 193 134-331 51-254 (313)
41 4ecn_A Leucine-rich repeat pro 99.3 2.1E-13 7.2E-18 140.5 3.3 261 133-402 491-817 (876)
42 4eco_A Uncharacterized protein 99.3 1E-13 3.4E-18 139.7 0.5 261 133-401 249-576 (636)
43 2z80_A TOLL-like receptor 2, v 99.3 3.4E-12 1.2E-16 119.1 10.9 233 133-372 52-311 (353)
44 3vq2_A TLR4, TOLL-like recepto 99.3 4.2E-13 1.4E-17 134.6 4.4 77 133-218 285-361 (606)
45 3j0a_A TOLL-like receptor 5; m 99.3 1.2E-12 4.1E-17 136.2 7.6 86 154-239 67-158 (844)
46 3oja_B Anopheles plasmodium-re 99.3 1.3E-12 4.3E-17 130.8 7.4 255 133-402 51-335 (597)
47 1ogq_A PGIP-2, polygalacturona 99.3 9E-13 3.1E-17 120.9 5.6 194 133-332 76-279 (313)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 8.6E-13 2.9E-17 131.1 5.3 76 133-218 100-180 (562)
49 3j0a_A TOLL-like receptor 5; m 99.3 9.5E-12 3.2E-16 129.4 12.2 101 251-353 266-373 (844)
50 1h6u_A Internalin H; cell adhe 99.3 7.4E-12 2.5E-16 114.4 9.9 186 133-332 41-228 (308)
51 1h6u_A Internalin H; cell adhe 99.3 9E-12 3.1E-16 113.9 10.2 164 159-331 40-205 (308)
52 3zyj_A Leucine-rich repeat-con 99.3 4.8E-12 1.6E-16 121.8 7.2 213 149-370 55-287 (440)
53 3zyi_A Leucine-rich repeat-con 99.3 7.5E-12 2.6E-16 120.8 8.2 203 161-370 76-298 (452)
54 1xku_A Decorin; proteoglycan, 99.3 2.1E-12 7.2E-17 119.3 3.9 213 149-372 43-273 (330)
55 1ziw_A TOLL-like receptor 3; i 99.3 6.3E-12 2.2E-16 127.8 7.8 262 133-401 25-339 (680)
56 1xku_A Decorin; proteoglycan, 99.3 1.2E-11 3.9E-16 114.3 8.9 62 155-218 95-156 (330)
57 3o53_A Protein LRIM1, AGAP0063 99.3 1.1E-11 3.7E-16 113.9 8.5 227 158-397 32-268 (317)
58 3oja_A Leucine-rich immune mol 99.2 7.5E-12 2.6E-16 121.8 7.4 207 133-353 34-248 (487)
59 1ozn_A Reticulon 4 receptor; N 99.2 4.3E-12 1.5E-16 114.6 5.3 179 149-331 23-211 (285)
60 2z80_A TOLL-like receptor 2, v 99.2 7.8E-12 2.7E-16 116.6 6.9 152 133-289 76-236 (353)
61 2ca6_A RAN GTPase-activating p 99.2 6.9E-13 2.4E-17 125.4 -0.4 177 133-311 32-255 (386)
62 2z63_A TOLL-like receptor 4, v 99.2 3.9E-12 1.3E-16 126.5 4.9 228 133-371 282-527 (570)
63 1wwl_A Monocyte differentiatio 99.2 8.9E-13 3.1E-17 120.8 -1.1 232 159-401 42-306 (312)
64 3zyi_A Leucine-rich repeat-con 99.2 1.2E-11 4.2E-16 119.4 6.7 171 155-331 94-276 (452)
65 2z66_A Variable lymphocyte rec 99.2 4.2E-12 1.4E-16 116.0 3.0 212 133-353 28-259 (306)
66 1ziw_A TOLL-like receptor 3; i 99.2 8.7E-12 3E-16 126.7 5.6 59 133-194 222-284 (680)
67 1ozn_A Reticulon 4 receptor; N 99.2 6.1E-12 2.1E-16 113.6 3.7 191 133-332 32-236 (285)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.3E-10 4.4E-15 115.4 13.1 166 229-402 331-508 (562)
69 3zyj_A Leucine-rich repeat-con 99.2 2.1E-11 7.2E-16 117.3 6.4 173 156-331 108-289 (440)
70 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 4.9E-15 115.5 12.2 211 133-372 81-294 (622)
71 3rfs_A Internalin B, repeat mo 99.2 1.9E-11 6.5E-16 109.6 4.8 169 133-310 41-215 (272)
72 2ca6_A RAN GTPase-activating p 99.1 1.9E-11 6.6E-16 115.4 4.8 198 133-332 60-314 (386)
73 3rfs_A Internalin B, repeat mo 99.1 7.4E-12 2.5E-16 112.3 1.8 186 157-352 38-232 (272)
74 2o6q_A Variable lymphocyte rec 99.1 3.6E-11 1.2E-15 107.7 6.3 168 160-331 37-215 (270)
75 1h6t_A Internalin B; cell adhe 99.1 4.7E-11 1.6E-15 108.1 7.1 165 133-311 46-211 (291)
76 2ft3_A Biglycan; proteoglycan, 99.1 1.6E-11 5.5E-16 113.5 4.0 254 133-401 54-330 (332)
77 2ft3_A Biglycan; proteoglycan, 99.1 6.1E-12 2.1E-16 116.3 1.1 212 150-371 46-273 (332)
78 1wwl_A Monocyte differentiatio 99.1 6.1E-12 2.1E-16 115.2 0.9 194 158-370 93-304 (312)
79 4ezg_A Putative uncharacterize 99.1 5.7E-11 1.9E-15 101.1 6.6 145 159-310 43-191 (197)
80 2z62_A TOLL-like receptor 4, v 99.1 1E-10 3.6E-15 105.0 8.3 181 148-331 18-210 (276)
81 3goz_A Leucine-rich repeat-con 99.1 1.4E-11 4.7E-16 115.4 2.6 153 159-311 21-207 (362)
82 1jl5_A Outer protein YOPM; leu 99.1 1.7E-10 5.8E-15 111.2 9.4 114 133-259 131-245 (454)
83 1jl5_A Outer protein YOPM; leu 99.1 7E-10 2.4E-14 106.9 13.6 157 160-331 131-287 (454)
84 4glp_A Monocyte differentiatio 99.1 2.7E-11 9.4E-16 110.8 3.3 181 122-310 80-282 (310)
85 1h6t_A Internalin B; cell adhe 99.1 1.8E-10 6E-15 104.3 8.5 167 157-332 43-211 (291)
86 2xwt_C Thyrotropin receptor; s 99.1 9.1E-11 3.1E-15 103.0 6.0 87 150-240 24-116 (239)
87 1m9s_A Internalin B; cell inva 99.1 1.3E-10 4.6E-15 115.5 7.4 166 133-312 43-209 (605)
88 1m9s_A Internalin B; cell inva 99.1 1.1E-10 3.6E-15 116.2 5.9 167 157-332 40-208 (605)
89 1p9a_G Platelet glycoprotein I 99.0 1.9E-10 6.3E-15 104.1 6.5 76 160-239 31-110 (290)
90 2o6q_A Variable lymphocyte rec 99.0 1.4E-10 4.8E-15 103.8 5.1 171 133-311 37-216 (270)
91 2xwt_C Thyrotropin receptor; s 99.0 1.5E-10 5.2E-15 101.6 4.8 192 133-332 31-237 (239)
92 4ezg_A Putative uncharacterize 99.0 2.7E-10 9.3E-15 96.8 6.2 147 133-288 44-194 (197)
93 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.9E-10 6.6E-15 74.8 3.1 40 7-46 5-44 (53)
94 4glp_A Monocyte differentiatio 99.0 7.2E-11 2.5E-15 108.0 1.1 135 159-311 90-235 (310)
95 3goz_A Leucine-rich repeat-con 98.9 9E-11 3.1E-15 109.8 0.1 58 161-218 52-120 (362)
96 2z62_A TOLL-like receptor 4, v 98.9 1.7E-10 5.9E-15 103.5 1.8 192 133-331 28-234 (276)
97 1p9a_G Platelet glycoprotein I 98.9 4.4E-10 1.5E-14 101.7 4.2 82 156-239 51-134 (290)
98 3m19_A Variable lymphocyte rec 98.9 3.7E-10 1.3E-14 99.9 3.2 158 148-311 25-190 (251)
99 1xeu_A Internalin C; cellular 98.9 1.3E-09 4.3E-14 97.1 4.5 147 155-311 36-183 (263)
100 3m19_A Variable lymphocyte rec 98.8 1.7E-09 5.9E-14 95.5 3.8 168 160-332 14-190 (251)
101 1xeu_A Internalin C; cellular 98.8 7.1E-10 2.4E-14 98.8 1.0 163 159-331 18-182 (263)
102 3cvr_A Invasion plasmid antige 98.8 7.7E-09 2.6E-13 101.9 7.8 181 131-332 57-241 (571)
103 2ell_A Acidic leucine-rich nuc 98.8 1.7E-09 5.7E-14 89.3 2.1 62 250-311 94-158 (168)
104 2o6s_A Variable lymphocyte rec 98.8 2.4E-09 8.1E-14 91.7 2.9 89 149-240 19-111 (208)
105 2ell_A Acidic leucine-rich nuc 98.7 8.7E-09 3E-13 85.0 5.6 105 133-240 24-131 (168)
106 4ay9_X Follicle-stimulating ho 98.7 1.5E-08 5.1E-13 94.1 6.8 64 274-338 176-240 (350)
107 2je0_A Acidic leucine-rich nuc 98.7 8.3E-10 2.8E-14 89.2 -1.6 35 160-194 17-54 (149)
108 2je0_A Acidic leucine-rich nuc 98.7 6.9E-09 2.4E-13 83.7 3.3 105 133-240 17-124 (149)
109 4ay9_X Follicle-stimulating ho 98.7 3.7E-08 1.3E-12 91.5 7.8 220 147-372 19-256 (350)
110 3e6j_A Variable lymphocyte rec 98.6 2.8E-08 9.5E-13 86.4 4.3 136 148-311 30-170 (229)
111 2ra8_A Uncharacterized protein 98.6 4E-08 1.4E-12 91.2 4.9 133 198-331 163-317 (362)
112 3e4g_A ATP synthase subunit S, 98.6 7.7E-08 2.6E-12 78.8 6.0 92 149-240 50-150 (176)
113 2o6s_A Variable lymphocyte rec 98.6 1.1E-08 3.8E-13 87.5 0.9 157 163-329 10-173 (208)
114 2v70_A SLIT-2, SLIT homolog 2 98.5 1.8E-08 6.1E-13 87.1 1.8 87 150-239 24-115 (220)
115 4g8a_A TOLL-like receptor 4; l 98.5 3.9E-08 1.3E-12 98.7 4.1 218 159-377 327-583 (635)
116 1ds9_A Outer arm dynein; leuci 98.5 9.9E-09 3.4E-13 87.1 -0.5 134 149-306 37-180 (198)
117 2v9t_B SLIT homolog 2 protein 98.5 3.9E-08 1.3E-12 84.9 3.1 136 148-310 22-162 (220)
118 4g8a_A TOLL-like receptor 4; l 98.5 1E-07 3.5E-12 95.6 6.7 232 159-402 305-578 (635)
119 2ra8_A Uncharacterized protein 98.5 1E-06 3.6E-11 81.6 11.8 205 86-312 93-319 (362)
120 3cvr_A Invasion plasmid antige 98.4 1.3E-07 4.3E-12 93.2 5.1 161 133-318 80-248 (571)
121 3un9_A NLR family member X1; l 98.4 1.6E-08 5.4E-13 94.6 -1.4 40 272-311 208-250 (372)
122 2v70_A SLIT-2, SLIT homolog 2 98.4 9E-08 3.1E-12 82.6 3.1 147 163-311 14-164 (220)
123 2xot_A Amphoterin-induced prot 98.4 8E-08 2.8E-12 89.6 2.7 154 149-310 30-199 (361)
124 2v9t_B SLIT homolog 2 protein 98.4 7.9E-08 2.7E-12 83.0 2.0 145 163-332 14-163 (220)
125 3e6j_A Variable lymphocyte rec 98.4 1E-07 3.5E-12 82.8 2.4 144 162-332 21-170 (229)
126 1a9n_A U2A', U2A'; complex (nu 98.4 6E-08 2.1E-12 80.5 0.8 130 157-310 16-150 (176)
127 1ds9_A Outer arm dynein; leuci 98.4 3.6E-08 1.2E-12 83.6 -0.9 83 228-312 69-152 (198)
128 1a9n_A U2A', U2A'; complex (nu 98.3 2.8E-07 9.7E-12 76.4 4.2 82 249-331 62-150 (176)
129 1dce_A Protein (RAB geranylger 98.3 8.2E-09 2.8E-13 102.0 -6.1 170 157-331 346-543 (567)
130 2e31_A FBS1, F-box only protei 98.3 3.6E-07 1.2E-11 81.0 3.2 36 9-44 49-85 (297)
131 2xot_A Amphoterin-induced prot 98.2 1.6E-07 5.4E-12 87.6 0.5 163 163-331 21-199 (361)
132 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.5E-11 71.5 4.7 85 252-336 62-154 (176)
133 3l2o_B F-box only protein 4; s 98.2 3.3E-07 1.1E-11 80.2 1.0 34 10-43 4-37 (312)
134 3un9_A NLR family member X1; l 98.2 1.4E-07 4.9E-12 88.1 -1.6 166 128-295 67-259 (372)
135 1dce_A Protein (RAB geranylger 98.1 1.3E-06 4.4E-11 86.3 3.5 54 183-240 442-497 (567)
136 1w8a_A SLIT protein; signaling 98.0 1.1E-06 3.7E-11 74.0 1.5 43 150-194 21-66 (192)
137 3sb4_A Hypothetical leucine ri 98.0 3.3E-06 1.1E-10 77.5 4.2 113 274-397 201-327 (329)
138 3v7d_B Cell division control p 97.9 2.4E-06 8.1E-11 82.1 1.4 39 7-45 11-49 (464)
139 2o6r_A Variable lymphocyte rec 97.9 4.6E-06 1.6E-10 69.0 2.7 35 160-194 28-64 (177)
140 1w8a_A SLIT protein; signaling 97.9 6.7E-06 2.3E-10 69.1 3.6 124 163-289 11-140 (192)
141 2wfh_A SLIT homolog 2 protein 97.8 6.3E-06 2.2E-10 69.3 2.7 34 161-194 32-66 (193)
142 2o6r_A Variable lymphocyte rec 97.8 1.2E-05 4E-10 66.5 4.1 126 162-289 9-138 (177)
143 2wfh_A SLIT homolog 2 protein 97.8 2E-05 7E-10 66.1 5.0 101 133-239 31-136 (193)
144 4b8c_D Glucose-repressible alc 97.7 6.2E-06 2.1E-10 84.0 1.1 108 178-289 220-330 (727)
145 2ovr_B FBW7, F-BOX/WD repeat p 97.7 1.6E-05 5.3E-10 76.0 3.4 37 7-43 15-51 (445)
146 1p22_A F-BOX/WD-repeat protein 97.7 8.1E-06 2.8E-10 77.8 0.9 37 7-43 7-47 (435)
147 4b8c_D Glucose-repressible alc 97.7 8.1E-06 2.8E-10 83.1 0.6 110 200-313 217-329 (727)
148 3sb4_A Hypothetical leucine ri 97.6 5.1E-05 1.8E-09 69.5 5.9 77 228-310 225-307 (329)
149 4fdw_A Leucine rich hypothetic 97.6 9.7E-05 3.3E-09 69.5 7.7 190 152-353 149-356 (401)
150 1io0_A Tropomodulin; LRR prote 97.5 4.1E-05 1.4E-09 63.8 3.3 39 272-310 118-161 (185)
151 3g39_A Variable lymphocyte rec 97.5 7.5E-05 2.6E-09 61.2 4.5 89 149-240 21-113 (170)
152 2r9u_A Variable lymphocyte rec 97.5 9.5E-05 3.3E-09 60.9 4.5 88 149-239 24-115 (174)
153 1io0_A Tropomodulin; LRR prote 97.1 0.00013 4.5E-09 60.7 1.5 38 181-218 64-104 (185)
154 4fs7_A Uncharacterized protein 96.9 0.00041 1.4E-08 65.1 3.5 153 228-396 229-393 (394)
155 3g39_A Variable lymphocyte rec 96.8 0.00051 1.8E-08 56.1 2.7 38 272-310 75-112 (170)
156 4fdw_A Leucine rich hypothetic 96.7 0.0012 4.3E-08 61.9 4.4 180 134-331 158-355 (401)
157 2ifg_A High affinity nerve gro 96.7 0.001 3.5E-08 61.1 3.7 89 148-240 20-114 (347)
158 2r9u_A Variable lymphocyte rec 96.6 0.00094 3.2E-08 54.8 2.9 82 133-219 33-117 (174)
159 3rw6_A Nuclear RNA export fact 95.5 0.0023 7.8E-08 56.2 0.1 64 249-313 168-233 (267)
160 3rw6_A Nuclear RNA export fact 95.5 0.012 4E-07 51.6 4.6 15 180-194 194-208 (267)
161 4gt6_A Cell surface protein; l 95.4 0.017 5.9E-07 53.9 5.8 22 149-170 75-97 (394)
162 2ifg_A High affinity nerve gro 94.9 0.014 4.9E-07 53.3 3.5 74 165-240 13-91 (347)
163 4fs7_A Uncharacterized protein 94.7 0.011 3.9E-07 55.2 2.3 117 272-399 250-374 (394)
164 4gt6_A Cell surface protein; l 89.1 0.13 4.5E-06 47.8 1.7 33 272-308 308-342 (394)
165 1pgv_A TMD-1, tropomodulin TMD 86.8 0.53 1.8E-05 38.9 3.8 21 197-217 31-51 (197)
166 1pgv_A TMD-1, tropomodulin TMD 84.4 0.25 8.5E-06 40.9 0.7 94 122-217 28-136 (197)
167 3rfe_A Platelet glycoprotein I 77.8 1.7 5.7E-05 33.1 3.3 42 151-194 24-67 (130)
168 4h09_A Hypothetical leucine ri 77.3 0.7 2.4E-05 42.5 1.2 120 204-328 214-340 (379)
169 4h09_A Hypothetical leucine ri 71.4 2.8 9.6E-05 38.3 3.7 138 205-349 192-340 (379)
170 3rfe_A Platelet glycoprotein I 48.5 6.1 0.00021 29.9 1.2 34 276-310 32-65 (130)
171 2lz0_A Uncharacterized protein 26.8 65 0.0022 22.8 3.7 40 151-190 10-51 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=8.5e-26 Score=226.48 Aligned_cols=200 Identities=11% Similarity=0.090 Sum_probs=105.3
Q ss_pred cccccC----CCChHHHHHHhcCC-ChhhHHhhhccccchhhhhcccCe-EEeeCCCCCCCCCC--CccCc---c----c
Q 015025 7 AMDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASR--LDYGS---F----C 71 (414)
Q Consensus 7 ~~d~i~----~LPdevL~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~--~~~~~---~----~ 71 (414)
+.|+++ +||||++.+||+|| +.+|+++++.|||||++++...+. +.+. ..+...... ..+++ . |
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~~ 83 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSLKLKGK 83 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEEEecCC
Confidence 456666 89999999999999 899999999999999987543322 1111 100000000 00000 0 0
Q ss_pred cccccch-hh-hhHHHHHHHHHHHHHhhhcCCcccceEEEEEEecccCCChhHHHHHHHHHHhcCceeeEEEeeeCC-Cc
Q 015025 72 VRKQNYS-FS-ETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDE-NT 148 (414)
Q Consensus 72 ~~~~~~~-~~-~~~~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~~~~~l~~L~~~l~~~~-~~ 148 (414)
....... .. .........+.... ...+.++.+.+.... ..+....|+......++++|+ +..+. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~ 152 (592)
T 3ogk_B 84 PRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFT 152 (592)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEE
T ss_pred cchhhcccccccccccchHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcC
Confidence 0000000 00 00000011122111 123567777666331 122344455554444588888 54332 22
Q ss_pred cccCCccccccccccEEEEecccccCCc------cccCCCCcceEEceeEEec---hHHHHHHHhcCCcccEEEeeccC
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCW 218 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~~~ 218 (414)
...++.....|++|++|++++|.+.... ....+++|++|+++++.++ .+.+..++.+||+|++|.+.+|.
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2334444456788888888888754321 2345778888888777663 56777777788888888887764
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.3e-27 Score=233.89 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=29.4
Q ss_pred cccccCCCChHHHHHHhcCCC-hhhHHhhhccccchhhh
Q 015025 7 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL 44 (414)
Q Consensus 7 ~~d~i~~LPdevL~~I~s~L~-~~~~~~~~~vskrWr~l 44 (414)
+.|.+++||||||.+||+||| .+|++++++|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 468999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2e-24 Score=201.00 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=35.2
Q ss_pred ccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025 8 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 45 (414)
Q Consensus 8 ~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw 45 (414)
+..+++||||++.+||+||+.+|+++++.|||+|+++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999985
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=2.4e-15 Score=140.19 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=36.7
Q ss_pred ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-eccCCCCCcEE
Q 015025 156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIM 234 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L 234 (414)
+..+++|++|++++|.+...+....+++|++|+++++.+.... . +..+++|+.|++.+|.....+ .+..+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 3345555555555554443333445555555555555442111 0 344555555555555332221 12234455555
Q ss_pred Eeeec
Q 015025 235 EIRSF 239 (414)
Q Consensus 235 ~i~~~ 239 (414)
++.+|
T Consensus 161 ~l~~~ 165 (347)
T 4fmz_A 161 TVTES 165 (347)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 55444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=7e-15 Score=135.84 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=112.6
Q ss_pred HhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 131 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 131 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
...++++|+ +..+.. ..+|..++.+++|++|++++|.+...+ ....+++|++|+++++.++ .+...+.++++|
T Consensus 79 ~~~~l~~L~--L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALE--LRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEE--EESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred cccceeEEE--ccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence 347888898 654333 488888889999999999999877444 5678999999999999885 334446789999
Q ss_pred cEEEeeccCCCceeec-----------cCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCc
Q 015025 210 EDLCFSNCWGLKHLCV-----------SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL 277 (414)
Q Consensus 210 e~L~l~~~~~~~~~~~-----------~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L 277 (414)
+.|++.+|...+.+.. .++++|+.|++++|. ..+......+++|++|+++.+... .++..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 9999999876544321 124556666665553 111111123455555555533221 122223445555
Q ss_pred cEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc---ccccccceEEeccCCCcee
Q 015025 278 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKV 336 (414)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~ 336 (414)
+.|+++++.+.... ...+..+++|+.|++++|.....+. ..+++|+.|++++|+.+..
T Consensus 232 ~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 232 EELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 55555544433221 1123344555555555543333222 1234445555555444433
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=9.9e-16 Score=153.29 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred hcCceeeEEEeeeC-CCccccCCccccccccccEEEEecccccCCc------cccCCCCcceEEceeEE--echHHHHHH
Q 015025 132 ENGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC--LDEQMVQKL 202 (414)
Q Consensus 132 ~~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~--~~~~~l~~l 202 (414)
.+++++|+ +..+ ......++.....|++|++|++++|.+.... ....+++|++|+++++. ++...+..+
T Consensus 129 ~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 129 FKNFKVLV--LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp CTTCCEEE--EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred CCCCcEEe--CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 36888888 5543 2222335554556888888888887754321 22366788888888775 466777777
Q ss_pred HhcCCcccEEEeecc
Q 015025 203 ASECPLLEDLCFSNC 217 (414)
Q Consensus 203 l~~~p~Le~L~l~~~ 217 (414)
..+||+|+.|++.+|
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 777888888888776
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=1.5e-15 Score=151.88 Aligned_cols=226 Identities=15% Similarity=0.104 Sum_probs=138.7
Q ss_pred cccceEEEEEEeccc------CCChhHHHHHHHHHHh--cCceeeEEEeeeCCCccccCCccccc-ccc-ccEEEEeccc
Q 015025 102 FCIQKFRLFLTFLDV------KGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFS-ANS-VTNLRLVWCR 171 (414)
Q Consensus 102 ~~l~~l~l~~~~~~~------~~~~~~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~-L~~L~l~~~~ 171 (414)
+.++++.+....... .........|+..... +++++|+ +..+...... +..+.. +++ |++|++++|.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~--L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH--FRRMIVSDLD-LDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE--EESCBCCHHH-HHHHHHHHGGGCCEEEEESCE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE--eeccEecHHH-HHHHHHhccccCcEEECcCCC
Confidence 458888886532100 1122245667776653 8999999 6544332222 222333 445 9999999986
Q ss_pred c-cCCc---cccCCCCcceEEceeEEec---hHHHHHHHhcCCcccEEEeeccCCC--c--eee--ccCCCCCcEEEeee
Q 015025 172 L-EQPF---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCWGL--K--HLC--VSKASKLKIMEIRS 238 (414)
Q Consensus 172 l-~~~~---~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~~~~~--~--~~~--~~~~~~L~~L~i~~ 238 (414)
. .... ....+++|++|+|+++.++ ...+..+..+++.|++|++.++... . .+. +.++++|+.|++.+
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 2 2111 2347899999999999883 3347778889999999999877642 1 111 22578999999988
Q ss_pred cc-ccceeeeecCCCeeEEEEEeeCC--------------------------CCceEEeecCCCCccEEEeeecccchHH
Q 015025 239 FS-EEIEIVEISVPSLQQLTLLFYGA--------------------------RRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 239 ~~-~~l~~~~~~~p~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
|. ..+......+++|++|.++.... ....+..+..+++|++|+++++.+++..
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 75 22222233456666666641100 1112222345778888888887777777
Q ss_pred HHHHhhcCCCCcEEEecCccc---cccccccccccceEEecc
Q 015025 292 FNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRS 330 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~L~~L~l~~ 330 (414)
+..++..+++|++|++..+.. ...+...+++|+.|++.+
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 666777888888888874411 122233467788887774
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.5e-15 Score=139.44 Aligned_cols=175 Identities=17% Similarity=0.282 Sum_probs=122.9
Q ss_pred ccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEe
Q 015025 160 NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEI 236 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i 236 (414)
++++.|+++++.+.... ....+++|++|+++++.+++..+..++..|++|++|++.+|..... -.+..+++|+.|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67888888887765443 4456788999999888887777888888889999999988864222 12345788999988
Q ss_pred eecc--c--cceeeeecCCCeeEEEEEee-CCCCc-eEEeecCCC-CccEEEeeec--ccchHHHHHHhhcCCCCcEEEe
Q 015025 237 RSFS--E--EIEIVEISVPSLQQLTLLFY-GARRP-RVVEVARSP-HLKKLDLVSV--YFADNEFNHLISKFPSLEDLFV 307 (414)
Q Consensus 237 ~~~~--~--~l~~~~~~~p~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l 307 (414)
++|. . .+..+...+|+|++|+++++ ...+. ....+..++ +|+.|+++++ .+++..+...+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 8884 1 12333346788888888865 33211 233356788 9999999888 5666667777788899999999
Q ss_pred cCcccccc----ccccccccceEEeccCCCc
Q 015025 308 TRCCLPGK----IKISSNQLKNLLFRSCKYL 334 (414)
Q Consensus 308 ~~c~~~~~----~~~~~~~L~~L~l~~c~~L 334 (414)
++|..+.. ....+++|+.|++++|..+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 98864322 1234578888888888643
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=2.5e-14 Score=133.31 Aligned_cols=253 Identities=13% Similarity=0.055 Sum_probs=158.7
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ..++. +..+++|++|++++|.+...+....+++|++|+++++.++.- . .+.++++|++|
T Consensus 44 ~~L~~L~--l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLV--VAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEE--CCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEE
T ss_pred ccccEEE--EeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEE
Confidence 6889998 654332 34443 667999999999999887655578899999999999988432 2 26789999999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 290 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 290 (414)
++.+|.......+..+++|+.|++++|. ....+ ...+++|++|.++.+....... +..+++|+.|+++++.+...
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred ECcCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 9999875433336678999999999985 11111 2356778888877443322111 45666777777766655432
Q ss_pred HHH-------------------HHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee--ccCCccceEE
Q 015025 291 EFN-------------------HLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFT 348 (414)
Q Consensus 291 ~~~-------------------~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l~ 348 (414)
... ..+..+++|++|++++|...... ...+++|+.|++++|. +..+. ...++|+.++
T Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLN 271 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEE
T ss_pred ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEE
Confidence 110 00344455555555554221111 2234566666666552 22222 2356777777
Q ss_pred eeecccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 349 YEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 349 ~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
+.++.+. .....+++|+.+++..+.- . ......+.++++|++|+++.++
T Consensus 272 l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~----~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 272 VGSNQISDISVLNNLSQLNSLFLNNNQL-G----NEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCC-C----GGGHHHHHTCTTCSEEECCSSS
T ss_pred ccCCccCCChhhcCCCCCCEEECcCCcC-C----CcChhHhhccccCCEEEccCCc
Confidence 7777643 2234577888888875432 1 1224556788899988887654
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=2.1e-14 Score=132.66 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=151.5
Q ss_pred cccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEE
Q 015025 159 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME 235 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~ 235 (414)
..+++.|+++++.+...+ ....+++|++|+|+++.+. .+...+.++++|++|++.+|... .+ .+.++++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 368999999999877544 4667999999999999885 33444678999999999998643 32 245689999999
Q ss_pred eeeccccceeee------------ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCc
Q 015025 236 IRSFSEEIEIVE------------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 303 (414)
Q Consensus 236 i~~~~~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 303 (414)
+++|. ....+. ..+++|++|+++.+... .++..+..+++|+.|+++++.++.- ...+..+++|+
T Consensus 157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l--~~~l~~l~~L~ 232 (328)
T 4fcg_A 157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLE 232 (328)
T ss_dssp EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC--CGGGGGCTTCC
T ss_pred CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC--chhhccCCCCC
Confidence 99986 222111 14899999999976553 4555678899999999999988742 22467889999
Q ss_pred EEEecCcccccccc---ccccccceEEeccCCCceeeec---cCCccceEEeeecc----cceEeeecCCccEEEEE
Q 015025 304 DLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP----IPIISINVPCPWKVSFV 370 (414)
Q Consensus 304 ~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~----~~~~~~~~~~L~~l~i~ 370 (414)
+|++++|.....+. ..+++|+.|++++|..+..++. ..++|+.+++.++. +|....++++|+.+.+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999986655543 3467899999999987766652 36677777777765 34445567777777653
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=4.9e-15 Score=152.60 Aligned_cols=218 Identities=16% Similarity=0.026 Sum_probs=115.3
Q ss_pred ccCCccccccccccEEEEecccccC--Cc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQ--PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 224 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~- 224 (414)
..+|..+..+++|++|++++|.+.. +. ....+++|++|+++++.+.......+..++++|++|++.+|...+...
T Consensus 90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 3455566666777777777766542 11 345667777777776666322222222456677777776665422211
Q ss_pred ----ccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025 225 ----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 299 (414)
Q Consensus 225 ----~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (414)
+.++++|+.|++++|. ..... ...+++|++|+++.+......+. ++.+++|+.|+++++.+++.. ...+..+
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l 246 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTC 246 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTC
T ss_pred hhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcC
Confidence 3356677777776664 11111 13566677777764444333333 566677777777766665433 2345566
Q ss_pred CCCcEEEecCcccccccc-ccccccceEEeccCCCceeeec---c-CCccceEEeeeccc----ceEeeecCCccEEEEE
Q 015025 300 PSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVIDV---D-APNLLLFTYEFNPI----PIISINVPCPWKVSFV 370 (414)
Q Consensus 300 ~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~L~~l~i---~-~~~L~~l~~~~~~~----~~~~~~~~~L~~l~i~ 370 (414)
++|++|++++|.....+. ..+++|+.|++++|.--..++. . +++|+.+++.++.+ |....++++|+++++.
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 777777777663322211 1355666666665532212211 1 25566666655542 2223345566666655
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.52 E-value=7.8e-14 Score=135.31 Aligned_cols=234 Identities=15% Similarity=0.055 Sum_probs=111.4
Q ss_pred ccccccccEEEEecccccCCccccCCCCcceEEceeEEechH-HHH-----------------HHHhcCCcccEEEeecc
Q 015025 156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ-MVQ-----------------KLASECPLLEDLCFSNC 217 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~-~l~-----------------~ll~~~p~Le~L~l~~~ 217 (414)
+..+++|++|++++|.+...+....+++|++|+++++.+..- .+. .-+.+++.|+.|++.+|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 444555555555555544333344555555555555554211 000 00344555666666555
Q ss_pred CCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEe----------------------ecCC
Q 015025 218 WGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVE----------------------VARS 274 (414)
Q Consensus 218 ~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~----------------------~~~~ 274 (414)
.....-.+..+++|+.|++++|. ..... ...+++|++|+++.+.... . .. +..+
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l 264 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGL 264 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred cCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcC
Confidence 43221123345566666666554 11111 1134455555555322211 0 11 3344
Q ss_pred CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee-ccCCccceEEeeec
Q 015025 275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFN 352 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~-i~~~~L~~l~~~~~ 352 (414)
++|+.|+++++.++.... +..+++|+.|++++|...... ...+++|+.|++++|.--.... -..++|+.+++.++
T Consensus 265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 555555555544433211 344555555555555221111 1235566666666653211111 13566777777776
Q ss_pred ccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 353 PIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 353 ~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
.+. ....++++|+.+++..+.-.+. . + +.++++|++|.++.++
T Consensus 342 ~l~~~~~l~~l~~L~~L~l~~n~l~~~---~--~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 KVSDVSSLANLTNINWLSAGHNQISDL---T--P--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCBC---G--G--GTTCTTCCEEECCCEE
T ss_pred ccCCchhhccCCCCCEEeCCCCccCcc---c--h--hhcCCCCCEEeccCCc
Confidence 643 2334577888888874432111 1 1 7788889988887654
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=3.5e-15 Score=149.74 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=36.0
Q ss_pred cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc------cccccccccceEEeccCCCceeee----ccC
Q 015025 272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLLFRSCKYLKVID----VDA 341 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~~c~~L~~l~----i~~ 341 (414)
..+++|+.|+++++.+.... ...+..+++|++|++++|.... .....+++|+.|++++|. +..+. ...
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 499 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSL 499 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccc
Confidence 34555555555555443221 1223445555555555553222 112234555556655552 22221 124
Q ss_pred CccceEEeeecc
Q 015025 342 PNLLLFTYEFNP 353 (414)
Q Consensus 342 ~~L~~l~~~~~~ 353 (414)
++|+.+++.++.
T Consensus 500 ~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 500 KMMNHVDLSHNR 511 (606)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEECCCCc
Confidence 555555555554
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=1.6e-14 Score=148.67 Aligned_cols=174 Identities=16% Similarity=0.020 Sum_probs=113.8
Q ss_pred cccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 157 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
..+++|++|++++|.+.... ....+++|++|+++++.++. .+...+.++++|++|++.+|...+......+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 55778888888887765422 46678888888888888753 23445678889999999888754433333578888888
Q ss_pred eeecc--ccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc
Q 015025 236 IRSFS--EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL 312 (414)
Q Consensus 236 i~~~~--~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 312 (414)
+++|. ..+.... ..+++|++|+++.+......+..++.+++|+.|+++++.+++......+..+++|++|++++|..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88875 1111111 22488899888854433334445677888999998888776443344466788888888888743
Q ss_pred cccccc---ccc-ccceEEeccC
Q 015025 313 PGKIKI---SSN-QLKNLLFRSC 331 (414)
Q Consensus 313 ~~~~~~---~~~-~L~~L~l~~c 331 (414)
...+.. ..+ +|+.|+++++
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSS
T ss_pred CccccHHHHhhhcCCcEEEccCC
Confidence 322221 122 6666666655
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.47 E-value=1.6e-13 Score=133.10 Aligned_cols=247 Identities=11% Similarity=0.072 Sum_probs=123.5
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+. ...++. +..+++|++|++++|.+...+....+++|++|+++++.++... . +.++++|++|
T Consensus 68 ~~L~~L~--Ls~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQIN--FSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEE--CCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred cCCCEEE--CCCCc--cCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEE
Confidence 5777777 54332 223343 5667788888888877665444667788888888887763221 1 5678888888
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEE----------------------eeCCCCceEEe
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL----------------------FYGARRPRVVE 270 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~----------------------~~~~~~~~~~~ 270 (414)
++.+|.....-.+..+++|+.|.+..+...... ...+++|++|+++ .+......+
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence 887775322112333444444444322111110 1133444444444 222111111
Q ss_pred ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee--ccCCccceE
Q 015025 271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLF 347 (414)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l 347 (414)
++.+++|+.|+++++.+++. ..+..+++|+.|++++|...... ...+++|+.|+++++. +..+. ...++|+.+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNL 292 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeE
Confidence 23344444444444444331 12334455555555554221111 1224455555555542 11111 235566777
Q ss_pred Eeeecccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 348 TYEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 348 ~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
++.++.+. .....+++|+.+++..+.-.+. . . +..+++|++|+++.+
T Consensus 293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~---~---~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDI---S---P-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC---G---G-GGGCTTCCEEECCSS
T ss_pred EcCCCcccCchhhcCCCCCCEEECcCCcCCCc---h---h-hccCccCCEeECCCC
Confidence 76666532 1234567777777764432111 1 1 567788887777644
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=2.1e-14 Score=139.82 Aligned_cols=215 Identities=13% Similarity=0.032 Sum_probs=91.5
Q ss_pred CccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCC
Q 015025 153 PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKA 228 (414)
Q Consensus 153 ~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~ 228 (414)
|..+..+++|++|++++|.+...+ .+..+++|++|+|+++.+... ....+.++++|++|.+.++..... -.+.++
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCC
Confidence 334444555556665555544332 234455555555555544211 111234455555555555432111 112234
Q ss_pred CCCcEEEeeecc-cc---------------------ceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEe
Q 015025 229 SKLKIMEIRSFS-EE---------------------IEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 282 (414)
Q Consensus 229 ~~L~~L~i~~~~-~~---------------------l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (414)
++|+.|++.+|. .. +..+ ...+++|++|+++.+......+.......+|+.|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 455555555443 01 1111 113344444444432222211111122235555555
Q ss_pred eecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc
Q 015025 283 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP 355 (414)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~ 355 (414)
+++.++... ...+..+++|+.|++++|..... ....+++|+.|+++++. +..+. -..++|+.+++.++.+.
T Consensus 232 ~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 232 THCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp ESSCCCSCC-HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cCCcccccC-HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCc
Confidence 555444321 12345556666666665532211 11234556666665542 22221 12455666666555422
Q ss_pred ----eEeeecCCccEEEEE
Q 015025 356 ----IISINVPCPWKVSFV 370 (414)
Q Consensus 356 ----~~~~~~~~L~~l~i~ 370 (414)
....++++|+.+++.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCCGGGBSCGGGCCEEECC
T ss_pred eeCHhHcCCCcccCEEEcc
Confidence 122345566666665
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=5e-14 Score=136.02 Aligned_cols=158 Identities=16% Similarity=0.077 Sum_probs=99.2
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+... .++ +..+++|++|++++|.+...+ ...+++|++|+++++.++.- . +.+++.|++|
T Consensus 85 ~~L~~L~--Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L 153 (457)
T 3bz5_A 85 TNLTYLA--CDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL 153 (457)
T ss_dssp TTCSEEE--CCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCCc--eee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence 5677777 5443322 233 456777888888877766543 56777888888877777432 1 5567788888
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
++.+|...+.+.+..+++|+.|+++++. +..+. ..+++|+.|.++.+.... . .++.+++|+.|+++++.+++-.
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSCCC
T ss_pred ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccccC
Confidence 8877766665556667778888777764 22222 256677777776443322 1 3556777777777777665521
Q ss_pred HHHHhhcCCCCcEEEecCc
Q 015025 292 FNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c 310 (414)
+..+++|+.|++++|
T Consensus 229 ----~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 229 ----VTPLTQLTYFDCSVN 243 (457)
T ss_dssp ----CTTCTTCSEEECCSS
T ss_pred ----ccccCCCCEEEeeCC
Confidence 455667777777666
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=5.3e-14 Score=136.94 Aligned_cols=257 Identities=15% Similarity=0.055 Sum_probs=153.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
++++.|+ +..+... ...+..+..+++|++|++++|.+.... .+..+++|++|+|+++.++.- ....+.++++|+
T Consensus 32 ~~l~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLD--LGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEE--CCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCC
T ss_pred CCCcEEE--CCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCC
Confidence 4677777 5432221 122344556778888888877655421 456777888888877766311 112245677888
Q ss_pred EEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025 211 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 284 (414)
Q Consensus 211 ~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (414)
+|++.+|..... ..+..+++|+.|+++++. +..+ ...+++|++|+++.+.........+..+++|+.|++.+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 888877754222 123456788888887764 2222 12567788888875443322222355677888888877
Q ss_pred cccchHHHHHHhhcCCCCcEEEecCcccccccccc---ccccceEEeccCCCceeee----ccCCccceEEeeecccc--
Q 015025 285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS---SNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP-- 355 (414)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~---~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~-- 355 (414)
+.+.... ...+..+++|+.|++.+|.....+... ..+|+.|+++++. ++.+. -..++|+.+++.++.+.
T Consensus 186 n~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 186 LNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CCCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CcCcEeC-hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCcc
Confidence 7665422 123456778888888877555444322 3378888887763 33333 23677888888877643
Q ss_pred --eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 356 --IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 356 --~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
....++++|+++++..+.- .. .....+.++++|++|+++.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l-~~----~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQL-AV----VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCC-SE----ECTTTBTTCTTCCEEECCSSC
T ss_pred ChhhccccccCCEEECCCCcc-ce----ECHHHhcCcccCCEEECCCCc
Confidence 2344678888888864321 11 112356788899999887543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=1.5e-14 Score=140.01 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=57.5
Q ss_pred CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceE
Q 015025 275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLF 347 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l 347 (414)
++|+.|+++++.++... ...+..+++|++|++++|..... ....+++|+.|+++++. +..+. ...++|+.+
T Consensus 275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccc-hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEE
Confidence 34555555555443321 12244556666666666532221 11234566666666552 22221 124566666
Q ss_pred Eeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 348 TYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 348 ~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
++.++.+. .....+++|+++++..+.- +. .....++++++|++|+++.+
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQL-KS----VPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC----CCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccChhhccccccccEEECCCCcc-cc----CCHhHhccCCcccEEEccCC
Confidence 66665532 2233466666666653321 10 00123456667776666543
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=2.7e-14 Score=143.27 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=124.1
Q ss_pred ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
+..+++|+.|+++++.+...+....+++|++|+++++.++ .+..+ .++.|++|.+.+|..........+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 4557888888888887765545667788888888888772 22332 7888888888888666665666678888888
Q ss_pred eeecc-ccce---eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 236 IRSFS-EEIE---IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 236 i~~~~-~~l~---~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
++++. .... .....+++|++|+++.+.. ...+..+..+++|+.|+++++.+........+..+++|+.|++++|.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 88775 1111 1112567788888774432 12223455677777777777665543222334566677777777664
Q ss_pred ccccc---cccccccceEEeccCCCcee-ee---ccCCccceEEeeecccc----eEeeecCCccEEEEE
Q 015025 312 LPGKI---KISSNQLKNLLFRSCKYLKV-ID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFV 370 (414)
Q Consensus 312 ~~~~~---~~~~~~L~~L~l~~c~~L~~-l~---i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~ 370 (414)
..... ...+++|+.|++++|.--.. ++ -..++|+.+++.++.+. ....++++|+++++.
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 32221 22345666666665532211 11 12455555555555422 122345555555554
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.43 E-value=1.3e-13 Score=130.51 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=125.6
Q ss_pred cCceeeEEEeeeCCCccccCC-ccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+.. ..++ ..+..+++|++|++++|.+...+ ....+++|++|+++++.++. ....++.++++|
T Consensus 69 ~~L~~L~--L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLN--LNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEE--CTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCcEEE--CCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence 4566666 432221 2222 23444566666666666554332 23456666666666665531 111223456666
Q ss_pred cEEEeeccCCCce--eeccCCCCCcEEEeeeccccceeee-ecC-------------------CCeeEEEEEeeCCCCce
Q 015025 210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE-ISV-------------------PSLQQLTLLFYGARRPR 267 (414)
Q Consensus 210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~~-~~~-------------------p~L~~L~l~~~~~~~~~ 267 (414)
++|++.+|..... -.+..+++|+.|+++++. +..+. ..+ ++|++|+++.+.. ...
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l-~~~ 220 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-NVV 220 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC-CEE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccccccCCCCcceEEECCCCee-eec
Confidence 6666665543211 112344556666555553 11111 122 3455555552221 111
Q ss_pred EEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeeec---cC
Q 015025 268 VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVIDV---DA 341 (414)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~i---~~ 341 (414)
.....++|+.|+++++.+++. ..+..+++|++|++++|..... ....+++|+.|+++++. +..+.. ..
T Consensus 221 --~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l 294 (390)
T 3o6n_A 221 --RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 294 (390)
T ss_dssp --ECCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCC
T ss_pred --cccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCC
Confidence 122346777777777776653 3456677888888877743322 22335677777777653 333332 35
Q ss_pred CccceEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 342 PNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 342 ~~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
++|+.+++.++.+. .....+++|+.+++..+.- .. + . +..+++|++|+++.+
T Consensus 295 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i-~~--~---~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 295 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VT--L---K--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CC--C---C--CCTTCCCSEEECCSS
T ss_pred CCCCEEECCCCcceecCccccccCcCCEEECCCCcc-ce--e---C--chhhccCCEEEcCCC
Confidence 66777777766532 2234566777777764321 11 1 1 556677777766543
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=5e-14 Score=136.45 Aligned_cols=151 Identities=17% Similarity=0.081 Sum_probs=83.8
Q ss_pred cCCCeeEEEEEeeCCCCce-----EEeecCCCCccEEEeeecccchHH---HHHHhhcCCCCcEEEecCcccccc----c
Q 015025 249 SVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I 316 (414)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~ 316 (414)
.+++|++|+++.+...+.. ......+++|+.|+++++.+++.. +...+..+++|++|++++|..... +
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 4566676666633221100 001123667777777777666543 344455677777777777632211 1
Q ss_pred ----cccccccceEEeccCCCcee-----ee---ccCCccceEEeeecccc----eEee-----ecCCccEEEEEEeeec
Q 015025 317 ----KISSNQLKNLLFRSCKYLKV-----ID---VDAPNLLLFTYEFNPIP----IISI-----NVPCPWKVSFVCKGVL 375 (414)
Q Consensus 317 ----~~~~~~L~~L~l~~c~~L~~-----l~---i~~~~L~~l~~~~~~~~----~~~~-----~~~~L~~l~i~~~~~~ 375 (414)
....++|+.|++++|. +.. +. ...++|+.++++++.+. .... ..++|+++++..+. .
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i 382 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-V 382 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-C
T ss_pred HHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-C
Confidence 1122577777777774 211 11 12477888888777632 1111 15688888887542 2
Q ss_pred chhHHHhHHHHhccCcceeEEEEEEE
Q 015025 376 NTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 376 ~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
++..+..+...+.++++|++|+++.+
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCC
Confidence 33234466677777888888887654
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=5.3e-14 Score=139.99 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=135.4
Q ss_pred cCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCC
Q 015025 151 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS 229 (414)
Q Consensus 151 ~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~ 229 (414)
..|..+..+++|++|++++|.+...+ ....+ +|++|++.++.+. .+.. ..++.|++|.+.+|..........++
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence 34455556777888888877665433 33445 7778877777663 1111 35777777777777654444334567
Q ss_pred CCcEEEeeecc-ccce---eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025 230 KLKIMEIRSFS-EEIE---IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 305 (414)
Q Consensus 230 ~L~~L~i~~~~-~~l~---~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 305 (414)
+|+.|+++++. .... .....+++|++|+++.+... .....+..+++|+.|+++++.+........+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 77777777764 1111 11125677777777743322 2222356777777777777665443222234566777777
Q ss_pred EecCcccccc---ccccccccceEEeccCCCc-eeee---ccCCccceEEeeecccc----eEeeecCCccEEEEEEeee
Q 015025 306 FVTRCCLPGK---IKISSNQLKNLLFRSCKYL-KVID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGV 374 (414)
Q Consensus 306 ~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L-~~l~---i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~ 374 (414)
++++|..... ....+++|+.|++++|.-. ..++ -..++|+.+++.++.+. ....++++|+++++..+.-
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 7777643222 2233567777777766422 1121 23566777777666532 2233566777777764321
Q ss_pred cchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 375 LNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 375 ~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
+. .....+.++++|++|+++.+
T Consensus 507 -~~----~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 507 -KS----VPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp -SC----CCTTTTTTCTTCCEEECCSS
T ss_pred -CC----CCHHHhhcccCCcEEEecCC
Confidence 11 01234566677777766543
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=2.2e-14 Score=138.95 Aligned_cols=266 Identities=15% Similarity=0.139 Sum_probs=166.2
Q ss_pred HhcCceeeEEEeeeCCCccc---cCCccccccccccEEEEecccccCCc---cccCCC----CcceEEceeEEech---H
Q 015025 131 VENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDE---Q 197 (414)
Q Consensus 131 ~~~~l~~L~~~l~~~~~~~~---~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~----~L~~L~L~~~~~~~---~ 197 (414)
..+++++|+ +..+..... .++..+..+++|++|++++|.+.... ....++ +|++|+++++.+++ .
T Consensus 26 ~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 347999999 765554332 56777778899999999998875422 223455 79999999999854 4
Q ss_pred HHHHHHhcCCcccEEEeeccCCCce----ee---ccCCCCCcEEEeeecc-c--c---ceeeeecCCCeeEEEEEeeCCC
Q 015025 198 MVQKLASECPLLEDLCFSNCWGLKH----LC---VSKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYGAR 264 (414)
Q Consensus 198 ~l~~ll~~~p~Le~L~l~~~~~~~~----~~---~~~~~~L~~L~i~~~~-~--~---l~~~~~~~p~L~~L~l~~~~~~ 264 (414)
.+...+..+++|++|++.+|..... +. ....++|+.|++++|. . . +......+++|++|+++.+...
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 5666778999999999999874211 11 1124689999999886 1 1 1111225799999999954332
Q ss_pred CceEEee-----cCCCCccEEEeeecccchHH---HHHHhhcCCCCcEEEecCcccccc--------ccccccccceEEe
Q 015025 265 RPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK--------IKISSNQLKNLLF 328 (414)
Q Consensus 265 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~--------~~~~~~~L~~L~l 328 (414)
+.....+ ...++|+.|+++++.+++.. +...+..+++|++|++++|..... +....++|+.|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 1111111 13569999999999887753 455667899999999999843221 1123678999999
Q ss_pred ccCCCcee-----ee---ccCCccceEEeeecccc------e---EeeecCCccEEEEEEeeecchhHHHhHHHHhccCc
Q 015025 329 RSCKYLKV-----ID---VDAPNLLLFTYEFNPIP------I---ISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSK 391 (414)
Q Consensus 329 ~~c~~L~~-----l~---i~~~~L~~l~~~~~~~~------~---~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~ 391 (414)
++| .+.. +. -..++|+.+++.++.+. + ...+.++|+++++..+. .+......+...+.+++
T Consensus 264 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 264 WEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred cCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence 887 3322 11 12566777777665521 0 00112466666665332 11111233444555555
Q ss_pred ceeEEEEEE
Q 015025 392 QIESLKLSL 400 (414)
Q Consensus 392 ~L~~L~i~~ 400 (414)
+|++|+++.
T Consensus 342 ~L~~L~Ls~ 350 (461)
T 1z7x_W 342 FLLELQISN 350 (461)
T ss_dssp SCCEEECCS
T ss_pred CccEEEccC
Confidence 666555543
No 25
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=3e-13 Score=134.74 Aligned_cols=214 Identities=14% Similarity=0.015 Sum_probs=98.1
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 238 (414)
+++|++|++++|.+...+. .+++|++|+++++.++. +. ..+++|+.|.+.+|.. ..+.. .+++|+.|++++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L~~N~l-~~lp~-~l~~L~~L~Ls~ 150 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWIFGNQL-TSLPV-LPPGLQELSVSD 150 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCS
T ss_pred CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCcCEEECCCCCC-CcCCC-CCCCCCEEECcC
Confidence 3455555555555443221 44555555555554421 00 1345555555555432 22221 135666666665
Q ss_pred ccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc
Q 015025 239 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI 318 (414)
Q Consensus 239 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~ 318 (414)
|. +..+....++|+.|.++.+... .++ ..+++|+.|+++++.++. +....++|+.|.+.+|.. ..+..
T Consensus 151 N~--l~~l~~~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l-~~l~~ 218 (622)
T 3g06_A 151 NQ--LASLPALPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL-TSLPA 218 (622)
T ss_dssp SC--CSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC-SSCCC
T ss_pred Cc--CCCcCCccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcc-cccCC
Confidence 53 2222223345555555532221 111 234666666666665543 112234555555555421 12222
Q ss_pred cccccceEEeccCCCceeeeccCCccceEEeeecccc-eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEE
Q 015025 319 SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLK 397 (414)
Q Consensus 319 ~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 397 (414)
.+++|+.|+++++ +++.++...++|+.++++++.+. +.. .+++|+.|++..+. +..++..+.++++|+.|+
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~------L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQ------LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC------CCSCCGGGGGSCTTCEEE
T ss_pred CCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCCC------CCcCCHHHhhccccCEEE
Confidence 3455666666554 34444333455666666655533 111 44566666665331 112233355666666666
Q ss_pred EEEE
Q 015025 398 LSLY 401 (414)
Q Consensus 398 i~~~ 401 (414)
++.+
T Consensus 291 L~~N 294 (622)
T 3g06_A 291 LEGN 294 (622)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 5543
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=1.3e-13 Score=138.80 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=81.9
Q ss_pred cCceeeEEEeeeCCCccc----------------cCCcccc--ccccccEEEEecccccCC--ccccCCCCcceEEceeE
Q 015025 133 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERV 192 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~ 192 (414)
+++++|+ +..+..... .+|..+. .+++|++|++++|.+... .....+++|++|+++++
T Consensus 206 ~~L~~L~--Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFY--MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cCCCEEE--CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 6889999 654432220 1898888 899999999999975432 25678999999999999
Q ss_pred E-echHHHHHHHhc------CCcccEEEeeccCCCcee----eccCCCCCcEEEeeecc-c-cceeeeecCCCeeEEEEE
Q 015025 193 C-LDEQMVQKLASE------CPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLL 259 (414)
Q Consensus 193 ~-~~~~~l~~ll~~------~p~Le~L~l~~~~~~~~~----~~~~~~~L~~L~i~~~~-~-~l~~~~~~~p~L~~L~l~ 259 (414)
. ++...+..-+.. +++|++|++.+|... .+ .+..+++|+.|+++++. . .+. ....+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 665234433333 488999999888654 32 24467788888888775 1 122 11234555555555
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.40 E-value=9e-13 Score=127.20 Aligned_cols=203 Identities=15% Similarity=0.050 Sum_probs=105.6
Q ss_pred ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
+..+++|++|++++|.+...+ ...+++|++|+++++.++.- . +..+++|++|.+.+|.. ..+.+..+++|+.|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEE
Confidence 334555555555555544332 44555555555555555321 1 34555566665555542 223444556666666
Q ss_pred eeeccccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025 236 IRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 314 (414)
Q Consensus 236 i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 314 (414)
++.|. ....+. ..+++|++|+++.+.... ++ +..+++|+.|+++++.++.. -+..+++|+.|++++|....
T Consensus 155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 155 CHLNK-KITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CTTCS-CCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCC-cccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc
Confidence 66553 122222 245666777666433321 22 55667777777777666543 14566777777777763322
Q ss_pred cccccccccceEEeccC----------CCceeeeccCCccceEEeeecccc--eEeeecCCccEEEEEEe
Q 015025 315 KIKISSNQLKNLLFRSC----------KYLKVIDVDAPNLLLFTYEFNPIP--IISINVPCPWKVSFVCK 372 (414)
Q Consensus 315 ~~~~~~~~L~~L~l~~c----------~~L~~l~i~~~~L~~l~~~~~~~~--~~~~~~~~L~~l~i~~~ 372 (414)
--...+++|+.|+++++ ++|+.+.+...+|+.+++.++... +....+++|+.+++..+
T Consensus 227 ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence 11223567777776654 223333333334445555444321 23345678888888644
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=129.01 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=97.7
Q ss_pred ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH-HHHHHhhcCCCCcEEEecCcccccccc----ccccc
Q 015025 248 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQ 322 (414)
Q Consensus 248 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~ 322 (414)
..+++|++|+++.+......+..+..+++|+.|+++++.++.- .+...+..+++|++|++++|.....+. ...++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 3677888888885544433344457788999999998888752 334557788999999999885544232 33578
Q ss_pred cceEEeccCCCceeeeccC-CccceEEeeeccc---ceEeeecCCccEEEEEEeeecchhHHHhHHH-HhccCcceeEEE
Q 015025 323 LKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNTHWYLKLKK-FLGVSKQIESLK 397 (414)
Q Consensus 323 L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~-~l~~~~~L~~L~ 397 (414)
|+.|++++|.--...+... ++|+.+++.++.+ |.....+++|+.+++..+.- ..++. .+.++++|++|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l------~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL------KSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEE
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC------CccCHHHhccCCcccEEE
Confidence 8888888875322222222 5788888887763 33334788888888874421 11221 467788888888
Q ss_pred EEEEE
Q 015025 398 LSLYS 402 (414)
Q Consensus 398 i~~~~ 402 (414)
++.++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 76543
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=1.6e-13 Score=137.72 Aligned_cols=240 Identities=18% Similarity=0.177 Sum_probs=162.9
Q ss_pred cCCcc-ccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---ec
Q 015025 151 TLPQA-IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CV 225 (414)
Q Consensus 151 ~l~~~-l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~ 225 (414)
.++.. +..+++|++|++++|.+...+ ....+++|++|+++++.+.... ...+.++++|++|.+.+|.....+ .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhh
Confidence 34433 556899999999999876544 5678899999999999884321 233567999999999998654332 24
Q ss_pred cCCCCCcEEEeeeccccceee------eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025 226 SKASKLKIMEIRSFSEEIEIV------EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 299 (414)
Q Consensus 226 ~~~~~L~~L~i~~~~~~l~~~------~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (414)
..+++|+.|+++++. +..+ ...+++|++|+++.+......+..+..+++|+.|+++++.+........+..+
T Consensus 347 ~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 347 ENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 468999999999886 2222 23678999999985443222223456789999999998887654333346778
Q ss_pred CCCcEEEecCcccccc---ccccccccceEEeccCCCcee-e-----eccCCccceEEeeecccc----eEeeecCCccE
Q 015025 300 PSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKV-I-----DVDAPNLLLFTYEFNPIP----IISINVPCPWK 366 (414)
Q Consensus 300 ~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~-l-----~i~~~~L~~l~~~~~~~~----~~~~~~~~L~~ 366 (414)
++|+.|++++|..... ....+++|+.|+++++.--.. + .-..++|+.+++.++.+. ....++++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999854332 234478999999998853221 1 124688999999888743 33456889999
Q ss_pred EEEEEeeecchhHHHhHHHHhccCcceeEEEEE
Q 015025 367 VSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 399 (414)
Q Consensus 367 l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~ 399 (414)
+++..+.- +. .....+.++++| +|+++
T Consensus 505 L~Ls~N~l-~~----~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 505 VDLSHNRL-TS----SSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EECCSSCC-CG----GGGGGGTTCCSC-EEECC
T ss_pred EECCCCcc-Cc----CChhHhCccccc-EEECc
Confidence 99974421 11 112344555555 55544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=1.1e-13 Score=133.86 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=139.8
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC--ccccCCCCcceEEceeEEechHHHH-HHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~L 209 (414)
+++++|+ +..+.....-.+..+..+++|++|++++|.+... ..+..+++|++|+++++.++...+. ..+..+++|
T Consensus 54 ~~L~~L~--L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 54 QDLQFLK--VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp TTCCEEE--CCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred ccccEEE--CcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 4666666 4433222122233445577777777777765432 1456677777777777776432222 224567777
Q ss_pred cEEEeeccCCCceee---ccCCCCCcEEEeeecc-ccce--ee-eecCCCeeEEEEEeeCCCCceEE--------eecCC
Q 015025 210 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIE--IV-EISVPSLQQLTLLFYGARRPRVV--------EVARS 274 (414)
Q Consensus 210 e~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~~-~~l~--~~-~~~~p~L~~L~l~~~~~~~~~~~--------~~~~~ 274 (414)
++|++.+|....... +.++++|+.|+++++. .... .+ ....++|+.|.++.+........ .+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 777777775432211 3456777777777664 1110 00 01225666666663322111000 01245
Q ss_pred CCccEEEeeecccchHHHHHHhhc--C------------------------------------CCCcEEEecCcccccc-
Q 015025 275 PHLKKLDLVSVYFADNEFNHLISK--F------------------------------------PSLEDLFVTRCCLPGK- 315 (414)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~--~------------------------------------~~L~~L~l~~c~~~~~- 315 (414)
++|+.|+++++.++......+... . ++|+.|++++|.....
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 789999999888776544333221 1 3455555555432221
Q ss_pred --ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHHH
Q 015025 316 --IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKK 385 (414)
Q Consensus 316 --~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~ 385 (414)
....+++|+.|+++++. +..+. -+.++|+.+++.++.+. ....++++|+.+++..+.- +. ....
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~----~~~~ 365 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RA----LGDQ 365 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC-CE----ECTT
T ss_pred hhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc-cc----cChh
Confidence 12234567777776653 22221 13567777777776632 2334577888888764321 11 1123
Q ss_pred HhccCcceeEEEEEEE
Q 015025 386 FLGVSKQIESLKLSLY 401 (414)
Q Consensus 386 ~l~~~~~L~~L~i~~~ 401 (414)
.+.++++|++|+++.+
T Consensus 366 ~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 366 SFLGLPNLKELALDTN 381 (455)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hccccccccEEECCCC
Confidence 4667788888877654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=6.2e-13 Score=133.01 Aligned_cols=231 Identities=15% Similarity=0.131 Sum_probs=115.9
Q ss_pred cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCC
Q 015025 155 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASK 230 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~ 230 (414)
.+..+++|++|++++|.+...+ .+..+++|++|+|+++.++. ....++.++++|+.|++.+|...... .+.++++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 3444556666666665544332 23455666666666555521 11122345556666666555432111 1233455
Q ss_pred CcEEEeeecc-c------------------cceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 231 LKIMEIRSFS-E------------------EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 231 L~~L~i~~~~-~------------------~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
|+.|++++|. . .+..+. ..++|++|+++.+.. ..+ .....++|+.|+++++.+++.
T Consensus 173 L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~L~~L~ls~n~l-~~~--~~~~~~~L~~L~L~~n~l~~~- 247 (597)
T 3oja_B 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSI-NVV--RGPVNVELTILKLQHNNLTDT- 247 (597)
T ss_dssp CCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCTTCSEEECCSSCC-CEE--ECSCCSCCCEEECCSSCCCCC-
T ss_pred CcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-CCchhheeeccCCcc-ccc--ccccCCCCCEEECCCCCCCCC-
Confidence 5555555443 0 111111 223455555542221 111 112335677777777766652
Q ss_pred HHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeeec---cCCccceEEeeeccc---ceEeeecC
Q 015025 292 FNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNPI---PIISINVP 362 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~~---~~~~~~~~ 362 (414)
..+..+++|+.|++++|...... ...+++|+.|+++++. +..++. ..|+|+.|++.++.+ |.....++
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~ 324 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCC
Confidence 34566777888888777433221 2235677777777653 333332 256677777776653 22334566
Q ss_pred CccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 363 CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 363 ~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
+|+.|++..+.- .. + -+..+++|++|+++.++
T Consensus 325 ~L~~L~L~~N~l-~~--~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHNSI-VT--L-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSSCC-CC--C-----CCCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCCC-CC--c-----ChhhcCCCCEEEeeCCC
Confidence 777777764321 11 1 15566677777666443
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=2.7e-13 Score=139.71 Aligned_cols=150 Identities=11% Similarity=0.018 Sum_probs=94.4
Q ss_pred cCceeeEEEeeeCCCccc----------------cCCcccc--ccccccEEEEecccccCC--ccccCCCCcceEEceeE
Q 015025 133 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERV 192 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~ 192 (414)
++++.|+ +..+..... .+|..+. .+++|++|++++|.+... .....+++|+.|+++++
T Consensus 448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 6888888 654433321 3888877 899999999999875432 25678999999999999
Q ss_pred E-echHHHHHHH-------hcCCcccEEEeeccCCCcee----eccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEE
Q 015025 193 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 259 (414)
Q Consensus 193 ~-~~~~~l~~ll-------~~~p~Le~L~l~~~~~~~~~----~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~ 259 (414)
. ++...++.-+ ..+|+|+.|++.+|... .+ .+.++++|+.|+++++. ..++ ....+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 7 6542333322 34568999999888654 32 24467788888887775 2122 12255667777776
Q ss_pred eeCCCCceEEeecCCCC-ccEEEeeeccc
Q 015025 260 FYGARRPRVVEVARSPH-LKKLDLVSVYF 287 (414)
Q Consensus 260 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 287 (414)
.+... .++..+..+++ |+.|+++++.+
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCC
Confidence 43332 33333444555 66666655544
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.38 E-value=1.3e-13 Score=126.71 Aligned_cols=165 Identities=20% Similarity=0.136 Sum_probs=76.5
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+... ...|..+..+++|++|++++|.+........+++|++|+++++.++. +..++.|++|
T Consensus 34 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (317)
T ss_dssp GGCSEEE--CTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CCCCEEE--CcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEE
Confidence 4666666 4432211 12223445566777777777665433335566667777766666531 1234666666
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEee-cCCCCccEEEeeecccch
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 289 (414)
.+.+|.. ..+....+++|+.|+++++. ..+.. ....+++|++|+++.+.........+ ..+++|+.|+++++.++.
T Consensus 105 ~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 105 HAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ECCSSCC-SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECCCCcc-CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 6666542 22222334566666666554 11111 11134555555555322211111111 234555555555554433
Q ss_pred HHHHHHhhcCCCCcEEEecCc
Q 015025 290 NEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~c 310 (414)
.. ....+++|++|++++|
T Consensus 184 ~~---~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 184 VK---GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp EE---CCCCCTTCCEEECCSS
T ss_pred cc---cccccccCCEEECCCC
Confidence 21 1112455555555554
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.37 E-value=3e-12 Score=126.76 Aligned_cols=172 Identities=15% Similarity=0.057 Sum_probs=107.0
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
+++++|+ +..+... ...|..+..+++|++|++++|.+.... .+..+++|++|+++++.++.. ....+.++++|+
T Consensus 26 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLD--LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEE--CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCC
T ss_pred CCccEEE--CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCc
Confidence 4677777 5543322 223455667888888888888765433 456788888888888877422 223356788888
Q ss_pred EEEeeccCCCc-e--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025 211 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 283 (414)
Q Consensus 211 ~L~l~~~~~~~-~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (414)
+|++.+|.... . -.+.++++|+.|+++++. ....+ ...+++|++|+++.+......+..+..+++|+.|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 88888876422 1 124467888888888775 22222 1256788888888554433233345566777777777
Q ss_pred ecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 284 SVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
.+...... ..+...+++|+.|++++|
T Consensus 181 ~n~~~~~~-~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 181 LSESAFLL-EIFADILSSVRYLELRDT 206 (549)
T ss_dssp CSBSTTHH-HHHHHSTTTBSEEEEESC
T ss_pred cCcccccc-hhhHhhcccccEEEccCC
Confidence 66654322 223345677777777665
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=129.20 Aligned_cols=260 Identities=15% Similarity=0.062 Sum_probs=146.1
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ....|..+..+++|++|++++|.+...+.. .+++|++|+++++.++...+...+.++++|++|
T Consensus 45 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 45 SKLRILI--ISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp TTCCEEE--CCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccccEEe--cCCCcc-CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 4666666 443222 122244555667777777777766543322 667777777777766432222334567777777
Q ss_pred EeeccCCCceeeccCCCCC--cEEEeeeccc--------ccee----------------------eeecCCCeeEEEEEe
Q 015025 213 CFSNCWGLKHLCVSKASKL--KIMEIRSFSE--------EIEI----------------------VEISVPSLQQLTLLF 260 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L--~~L~i~~~~~--------~l~~----------------------~~~~~p~L~~L~l~~ 260 (414)
++.+|... ...+..+++| +.|+++++.- .+.. ....+++|+.++++.
T Consensus 121 ~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 121 GLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp EEEESSCC-GGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred EecCcccc-hhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 77766532 2333445566 7777666531 0000 011356677777774
Q ss_pred eC-------CCCceEEeecCCCCccEEEeeecccchHHHHHHhh--cCCCCcEEEecCcccccccc--------ccccc-
Q 015025 261 YG-------ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKIK--------ISSNQ- 322 (414)
Q Consensus 261 ~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~--------~~~~~- 322 (414)
+. .....+ .+..+++|+.|++.++.+.+..+..+.. ..++|++|++++|.....+. ...++
T Consensus 200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 32 111111 3556788888888887777654444332 24688888888774322221 12223
Q ss_pred -------------------------cceEEeccCCCceeee--ccCCccceEEeeeccc----ceEeeecCCccEEEEEE
Q 015025 323 -------------------------LKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPI----PIISINVPCPWKVSFVC 371 (414)
Q Consensus 323 -------------------------L~~L~l~~c~~L~~l~--i~~~~L~~l~~~~~~~----~~~~~~~~~L~~l~i~~ 371 (414)
|+.|+++++.- .... ...++|+.+++.++.+ |.....+++|+++++..
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 44444444431 1111 2467788888887763 23345788899998875
Q ss_pred eeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 372 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 372 ~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
+. ... +..+...+.++++|++|+++.+.
T Consensus 358 N~-l~~--l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 358 NQ-LKE--LSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SC-CCB--HHHHHHHHTTCTTCCEEECCSSC
T ss_pred Cc-cCc--cccchHHHhhCCCCCEEECCCCc
Confidence 43 222 34556778888899988887544
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=2e-13 Score=132.89 Aligned_cols=202 Identities=17% Similarity=0.108 Sum_probs=100.8
Q ss_pred cccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025 161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 238 (414)
+|++|++++|.+...+ .+..+++|++|+|+++.++... . +..++.|+.|++++|. +..+. ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence 5555555555544322 3445555555555555442100 0 4455556666655553 22222 125566666665
Q ss_pred ccccceee-eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-
Q 015025 239 FSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI- 316 (414)
Q Consensus 239 ~~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~- 316 (414)
|. +..+ ...+++|++|+++.+......+..++.+++|+.|+++++.+++.....+...+++|+.|++++|......
T Consensus 109 N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred Cc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 54 1111 1234566666666443333333344556666666666666554333333345666666666666322111
Q ss_pred cccccccceEEeccCCCceeee---ccCCccceEEeeeccc---ceEeeecCCccEEEEEE
Q 015025 317 KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFVC 371 (414)
Q Consensus 317 ~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~ 371 (414)
...+++|+.|+++++. +..++ ...++|+.++++++.+ |.....+++|+.+++..
T Consensus 187 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 1125566666666552 32222 1245566666666552 22234567888888863
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=2.1e-13 Score=124.75 Aligned_cols=219 Identities=17% Similarity=0.106 Sum_probs=135.8
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechH-HHHHHHhcCCcccEEEeeccCCCce-ee
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-LC 224 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~~p~Le~L~l~~~~~~~~-~~ 224 (414)
-..+|..+. ++|++|++++|.+...+ .+..+++|++|+++++.++.. .......++++|++|++.+|..... ..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 345555443 57888888888776544 246788888888888766311 1112234578888888888753221 12
Q ss_pred ccCCCCCcEEEeeecc-ccce--eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025 225 VSKASKLKIMEIRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 301 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~~-~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (414)
+..+++|+.|+++++. .... .....+++|++|+++.+.........+..+++|+.|+++++.+.+......+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4457888888888775 1111 122356788888887443322222234567888888888877665333345667788
Q ss_pred CcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeec-CCccEEEE
Q 015025 302 LEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINV-PCPWKVSF 369 (414)
Q Consensus 302 L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~-~~L~~l~i 369 (414)
|++|++++|..... .....++|+.|+++++. +..+. -..++|+.+++.++.+. .....+ ++|+.+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 88888888743322 22345788888887764 22221 23577888888877632 233455 48999999
Q ss_pred E
Q 015025 370 V 370 (414)
Q Consensus 370 ~ 370 (414)
.
T Consensus 256 ~ 256 (306)
T 2z66_A 256 T 256 (306)
T ss_dssp T
T ss_pred c
Confidence 7
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.36 E-value=5.6e-13 Score=132.04 Aligned_cols=148 Identities=19% Similarity=0.189 Sum_probs=80.3
Q ss_pred CCCeeEEEEEeeCCCCce--E-EeecCCCCccEEEeeecccchHHHHH---HhhcCCCCcEEEecCccccc--cc-----
Q 015025 250 VPSLQQLTLLFYGARRPR--V-VEVARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFVTRCCLPG--KI----- 316 (414)
Q Consensus 250 ~p~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~--~~----- 316 (414)
+++|++|+++.+...... + .....+++|+.|++.++.+++..... ....+++|+.|++.+|.... .+
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence 677888887744332210 0 01234678888888887776654433 34567788888887773211 00
Q ss_pred --cccc-----------------------------cccceEEeccCCCceeee----ccCCccceEEeeecccc------
Q 015025 317 --KISS-----------------------------NQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP------ 355 (414)
Q Consensus 317 --~~~~-----------------------------~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~------ 355 (414)
.... ++|+.|+++++. +..++ -..++|+.+++.++.+.
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccc
Confidence 0112 344445544432 23332 13567777777776632
Q ss_pred -eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 356 -IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 356 -~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
.....+++|+.+++..+. .+. +......+.++++|++|+++.+
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNH-LRS--MQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp HTCTTSSTTCCEEECTTSC-CCC--HHHHHHHGGGCTTCCEEECTTC
T ss_pred hhhhhccccCcEEEccCCc-ccc--cccchhhhhcCCCCCEEECCCC
Confidence 113456778888776432 111 2222345777778887777654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=2.4e-12 Score=121.87 Aligned_cols=229 Identities=17% Similarity=0.079 Sum_probs=143.9
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
+++++|+ +..+.. ....|..+..+++|++|++++|.+...+ .+..+++|++|+++++.+... ....+.++++|+
T Consensus 93 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 168 (390)
T 3o6n_A 93 HTIQKLY--MGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ 168 (390)
T ss_dssp TTCCEEE--CCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCC
T ss_pred CCcCEEE--CCCCCC-CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCC
Confidence 4667777 543221 1222333455677777777777665433 235677777777777766311 112245567777
Q ss_pred EEEeeccCCCceeeccCCC-------------------CCcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCceEEe
Q 015025 211 DLCFSNCWGLKHLCVSKAS-------------------KLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVE 270 (414)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~-------------------~L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~ 270 (414)
+|++.+|.. ..+.+..++ +|+.|+++++. +..+. ...++|++|+++.+..... ..
T Consensus 169 ~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 169 NLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS--INVVRGPVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp EEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC--CCEEECCCCSSCCEEECCSSCCCCC--GG
T ss_pred EEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCe--eeeccccccccccEEECCCCCCccc--HH
Confidence 777776642 222233334 45555555553 22222 2357899999996544332 34
Q ss_pred ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc--cccccccccceEEeccCCCceeeec---cCCccc
Q 015025 271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKYLKVIDV---DAPNLL 345 (414)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~ 345 (414)
+..+++|+.|+++++.+.... ...+..+++|+.|++++|.... .....+++|+.|+++++ .+..++. ..++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 678999999999999876532 2346778999999999984322 22235789999999988 3444432 357899
Q ss_pred eEEeeecccc-eEeeecCCccEEEEEEe
Q 015025 346 LFTYEFNPIP-IISINVPCPWKVSFVCK 372 (414)
Q Consensus 346 ~l~~~~~~~~-~~~~~~~~L~~l~i~~~ 372 (414)
.+++.++.+. .....+++|+.+++..+
T Consensus 322 ~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 322 NLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp EEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred EEECCCCccceeCchhhccCCEEEcCCC
Confidence 9999998855 44567889999999843
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=3.3e-13 Score=123.80 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=94.1
Q ss_pred CceeeEEEeeeCCCcc-ccCCccccccccccEEEEec-ccccC--CccccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 134 GVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVW-CRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 134 ~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~l~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
++++|+ +..+.... ..+|..+..+++|++|++++ +.+.. +.....+++|++|+++++.++. .+...+.++++|
T Consensus 51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTC
T ss_pred eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCC
Confidence 455666 43322211 14566666667777777764 44332 1145566677777777666531 112224556677
Q ss_pred cEEEeeccCCCce--eeccCCCCCcEEEeeecc-c-cceeeeecCC-CeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025 210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 284 (414)
Q Consensus 210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~-~-~l~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (414)
++|++.+|..... -.+..+++|+.|+++++. . .+......++ +|++|+++.+......+..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 7777766643211 123345667777666664 0 1111111333 666666663322111222233343 66666666
Q ss_pred cccchHHHHHHhhcCCCCcEEEecCccccccc--cccccccceEEeccC
Q 015025 285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRSC 331 (414)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~--~~~~~~L~~L~l~~c 331 (414)
+.++... ...+..+++|+.|++++|.....+ ....++|+.|+++++
T Consensus 207 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 207 NMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp SEEEECC-GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred CcccCcC-CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 6554321 223455666666666665322111 122345555555554
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=2.1e-13 Score=140.52 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=149.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEeccc-ccC--Cc--------cccCCCCcceEEceeEEechHHHHH
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF--------DSIMLCSLKKLTLERVCLDEQMVQK 201 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~--~~--------~~~~l~~L~~L~L~~~~~~~~~l~~ 201 (414)
+++++|+ +..+. ....+|..+..+++|++|++++|. +.. .+ ....+++|+.|+++++.++ .++.
T Consensus 491 ~~L~~L~--Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~ 565 (876)
T 4ecn_A 491 KDLTDVE--LYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA 565 (876)
T ss_dssp TTCCEEE--EESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred CCCCEEE--CcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence 6788888 65432 245778888888999999999886 543 11 1234568888888888775 3333
Q ss_pred --HHhcCCcccEEEeeccCCCcee-eccCCCCCcEEEeeecc-ccceeeeecCCC-eeEEEEE-----------------
Q 015025 202 --LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSFS-EEIEIVEISVPS-LQQLTLL----------------- 259 (414)
Q Consensus 202 --ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~-L~~L~l~----------------- 259 (414)
.+.++++|+.|++.+|... .+ .+..+++|+.|++++|. ..+......+++ |++|.++
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 5677888888888877542 22 23345566666665553 111111112333 4444444
Q ss_pred --------eeCCCCceE---Eeec--CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc--------
Q 015025 260 --------FYGARRPRV---VEVA--RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-------- 318 (414)
Q Consensus 260 --------~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-------- 318 (414)
.+......+ ..+. .+++|+.|+++++.++. ....++..+++|+.|+|++|... .+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 322211100 0111 22367777777776652 22334557788888888887332 2221
Q ss_pred ---cccccceEEeccCCCceeee---c--cCCccceEEeeeccc---ceEeeecCCccEEEEEEeeecc-hhHHHhHHHH
Q 015025 319 ---SSNQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLN-THWYLKLKKF 386 (414)
Q Consensus 319 ---~~~~L~~L~l~~c~~L~~l~---i--~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~-~~~~~~l~~~ 386 (414)
.+++|+.|++++| ++..++ . ..++|+.|++.++.+ |....++++|+.|++..+...+ ......++..
T Consensus 723 ~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred cccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 1237888888877 343443 1 457788888887763 3344577888888886421000 0001223445
Q ss_pred hccCcceeEEEEEEEE
Q 015025 387 LGVSKQIESLKLSLYS 402 (414)
Q Consensus 387 l~~~~~L~~L~i~~~~ 402 (414)
+.++++|++|+++.+.
T Consensus 802 l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND 817 (876)
T ss_dssp GGGCSSCCEEECCSSC
T ss_pred HhcCCCCCEEECCCCC
Confidence 6677888888776443
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.34 E-value=1e-13 Score=139.66 Aligned_cols=261 Identities=11% Similarity=0.057 Sum_probs=149.5
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEeccc-ccC--Cc-cccC------CCCcceEEceeEEechHHHHH-
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF-DSIM------LCSLKKLTLERVCLDEQMVQK- 201 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~--~~-~~~~------l~~L~~L~L~~~~~~~~~l~~- 201 (414)
+++++|+ +..+. ....+|..+..+++|++|++++|. +.. .+ .... +++|++|+++++.++ .+..
T Consensus 249 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~ 323 (636)
T 4eco_A 249 KDLTDVE--VYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE 323 (636)
T ss_dssp TTCCEEE--EECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred CCCCEEE--ecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence 6788888 65432 235788888889999999999987 653 11 2333 488999999988885 3433
Q ss_pred -HHhcCCcccEEEeeccCCCcee-eccCCCCCcEEEeeec------------------------c-ccceeeee--cCCC
Q 015025 202 -LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSF------------------------S-EEIEIVEI--SVPS 252 (414)
Q Consensus 202 -ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L~i~~~------------------------~-~~l~~~~~--~~p~ 252 (414)
.+.++++|+.|++.+|...+.+ .+..+++|+.|+++++ . ..+..... .+++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 5678889999998887643222 2223344555555444 3 11111000 1224
Q ss_pred eeEEEEEeeCCCCceEEeec-------CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccccc------
Q 015025 253 LQQLTLLFYGARRPRVVEVA-------RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS------ 319 (414)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~------ 319 (414)
|++|+++.+......+..+. .+++|+.|+++++.++. ....++..+++|+.|++++|... .+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 55555553333222222223 45577777777776653 22234556788888888877433 22211
Q ss_pred -----ccccceEEeccCCCceeee---c--cCCccceEEeeeccc---ceEeeecCCccEEEEEEeeecc-hhHHHhHHH
Q 015025 320 -----SNQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLN-THWYLKLKK 385 (414)
Q Consensus 320 -----~~~L~~L~l~~c~~L~~l~---i--~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~-~~~~~~l~~ 385 (414)
+++|+.|+++++. +..++ . ..++|+.+++.++.+ |....++++|+.+++..+...+ ......++.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 1278888887763 33333 1 456788888877763 3344467788888875321000 000122334
Q ss_pred HhccCcceeEEEEEEE
Q 015025 386 FLGVSKQIESLKLSLY 401 (414)
Q Consensus 386 ~l~~~~~L~~L~i~~~ 401 (414)
.+.++++|++|+++.+
T Consensus 561 ~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN 576 (636)
T ss_dssp TGGGCSSCCEEECCSS
T ss_pred HHhcCCCCCEEECCCC
Confidence 4567777887777644
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.4e-12 Score=119.08 Aligned_cols=233 Identities=15% Similarity=0.047 Sum_probs=155.3
Q ss_pred cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+.. ..++. .+..+++|++|++++|.+.... .+..+++|++|+++++.++. .....+.++++|
T Consensus 52 ~~L~~L~--l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLD--LSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEE--CTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred ccCcEEE--CCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence 5788888 654332 34444 5667899999999999876532 46788999999999998842 223346789999
Q ss_pred cEEEeeccCCCce---eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEe
Q 015025 210 EDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 282 (414)
Q Consensus 210 e~L~l~~~~~~~~---~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 282 (414)
++|++.+|..... -.+..+++|+.|+++++. .+..+ ...+++|++|+++.+......+..+..+++|++|++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 9999998864321 124568999999999884 23332 235789999999965543322345678899999999
Q ss_pred eecccchHHHHHHhhcCCCCcEEEecCccccccc------cccccccceEEeccCCC----ceeee---ccCCccceEEe
Q 015025 283 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI------KISSNQLKNLLFRSCKY----LKVID---VDAPNLLLFTY 349 (414)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~------~~~~~~L~~L~l~~c~~----L~~l~---i~~~~L~~l~~ 349 (414)
+++.+.... ..+...+++|+.|++++|...... ......++.+++.++.- +..++ -..++|+.+++
T Consensus 206 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 206 HMKQHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp ECSCSTTHH-HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCccccch-hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 999875433 344567899999999998433211 11234556666555421 11111 23567888888
Q ss_pred eecccc---eE-eeecCCccEEEEEEe
Q 015025 350 EFNPIP---II-SINVPCPWKVSFVCK 372 (414)
Q Consensus 350 ~~~~~~---~~-~~~~~~L~~l~i~~~ 372 (414)
.++.+. .. ..++++|+++++..+
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 777632 22 246788999988733
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=4.2e-13 Score=134.60 Aligned_cols=77 Identities=21% Similarity=0.078 Sum_probs=37.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
++++.|+ +..+. ...+| .+..+++|++|++++|.+...+.. .+++|++|+++++...... -+..+++|++|
T Consensus 285 ~~L~~L~--l~~~~--~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 355 (606)
T 3vq2_A 285 ANVSAMS--LAGVS--IKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYL 355 (606)
T ss_dssp TTCSEEE--EESCC--CCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEE
T ss_pred CCCCEEE--ecCcc--chhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEE
Confidence 5666666 43322 23344 455566666666666665433323 5555555555555221000 12345555555
Q ss_pred EeeccC
Q 015025 213 CFSNCW 218 (414)
Q Consensus 213 ~l~~~~ 218 (414)
++.+|.
T Consensus 356 ~ls~n~ 361 (606)
T 3vq2_A 356 DLSRNA 361 (606)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 555443
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=136.15 Aligned_cols=86 Identities=17% Similarity=0.023 Sum_probs=38.9
Q ss_pred ccccccccccEEEEecccccCC--ccccCCCCcceEEceeEEechHHHH-HHHhcCCcccEEEeeccCCCce---eeccC
Q 015025 154 QAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLLEDLCFSNCWGLKH---LCVSK 227 (414)
Q Consensus 154 ~~l~~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~Le~L~l~~~~~~~~---~~~~~ 227 (414)
..+..+++|++|+|++|.+... ..+..+++|++|+|+++.++...+. ..+.++++|++|++++|..... -.+.+
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 3344455555555555544322 1344555555555555544321111 1133455555555555543211 11234
Q ss_pred CCCCcEEEeeec
Q 015025 228 ASKLKIMEIRSF 239 (414)
Q Consensus 228 ~~~L~~L~i~~~ 239 (414)
+++|+.|+++++
T Consensus 147 L~~L~~L~Ls~N 158 (844)
T 3j0a_A 147 LNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESS
T ss_pred CCCCCEEECCCC
Confidence 555555555554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=1.3e-12 Score=130.76 Aligned_cols=255 Identities=17% Similarity=0.109 Sum_probs=160.1
Q ss_pred cCceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
.+++.++ +.. .....+|..++ .+++|++|++++|.+...+ .+..+++|++|+|+++.++. .....+.++++|
T Consensus 51 ~~l~~l~--l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEE--ESS--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCceEEE--eeC--CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence 4667777 432 33456666554 4899999999999876543 56789999999999998842 222345789999
Q ss_pred cEEEeeccCCCceee---ccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025 210 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 284 (414)
Q Consensus 210 e~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (414)
+.|++.+|... .+. +.++++|+.|++++|. ..+.. ....+++|++|.++.+.... ..++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---CCGGGCTTCSEEECCS
T ss_pred CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---cChhhhhhhhhhhccc
Confidence 99999998643 322 3568999999999986 11111 12367899999998544321 1245566666666665
Q ss_pred cccchHHHH--------------H-HhhcCCCCcEEEecCccccc-cccccccccceEEeccCCCceeee---ccCCccc
Q 015025 285 VYFADNEFN--------------H-LISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCKYLKVID---VDAPNLL 345 (414)
Q Consensus 285 ~~~~~~~~~--------------~-~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~ 345 (414)
+.++.-... . .....++|+.|++++|.... .....+++|+.|+++++.--...+ ...++|+
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 544321000 0 00112456666666653222 122346788888887764222211 2467888
Q ss_pred eEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025 346 LFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402 (414)
Q Consensus 346 ~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~ 402 (414)
.|++.++.+. .....+++|+.|++..+.- ..++..+..+++|++|+++.+.
T Consensus 282 ~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l------~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHL------LHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEECTTSCCCEEECSSSCCTTCCEEECCSSCC------CCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCCCCCCCcccccCCCCcEEECCCCCC------CccCcccccCCCCCEEECCCCC
Confidence 8888887743 3334588999999975432 1223335677899999887554
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=9e-13 Score=120.87 Aligned_cols=194 Identities=15% Similarity=0.018 Sum_probs=136.8
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEeccccc-CCc-cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLE-QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~-~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
+++++|+ +..+......+|..+..+++|++|++++|.+. ..+ ....+++|++|+++++.++. .+...+.++++|+
T Consensus 76 ~~L~~L~--L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEE--EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred CCCCeee--CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence 6899999 65322334577888889999999999999876 222 57789999999999998842 2233357799999
Q ss_pred EEEeeccCCCcee--eccCCC-CCcEEEeeecc-c-cceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeec
Q 015025 211 DLCFSNCWGLKHL--CVSKAS-KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 285 (414)
Q Consensus 211 ~L~l~~~~~~~~~--~~~~~~-~L~~L~i~~~~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 285 (414)
+|++.+|.....+ .+..++ +|+.|+++++. . ........+ +|++|+++.+......+..+..+++|+.|+++++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999998753232 234566 99999999885 1 111111133 3999999854333233344678999999999999
Q ss_pred ccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCC
Q 015025 286 YFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK 332 (414)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~ 332 (414)
.++.... .+..+++|++|++++|.....+ ...+++|+.|+++++.
T Consensus 232 ~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 232 SLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ceeeecC--cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 8764322 2567899999999998544332 3346788888888774
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.31 E-value=8.6e-13 Score=131.08 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=41.4
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC---ccccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP---FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+.. ..+|.. .+++|++|++++|.+... ..+..+++|++|+++++.++... +.+++.|
T Consensus 100 ~~L~~L~--Ls~N~l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L 169 (562)
T 3a79_B 100 QDLEYLD--VSHNRL--QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHL 169 (562)
T ss_dssp TTCCEEE--CTTSCC--CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTS
T ss_pred CCCCEEE--CCCCcC--CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhc
Confidence 4566666 433222 245544 566677777777665431 14556677777777776664322 2233444
Q ss_pred --cEEEeeccC
Q 015025 210 --EDLCFSNCW 218 (414)
Q Consensus 210 --e~L~l~~~~ 218 (414)
++|.+.+|.
T Consensus 170 ~L~~L~L~~n~ 180 (562)
T 3a79_B 170 HLSCILLDLVS 180 (562)
T ss_dssp CEEEEEEEESS
T ss_pred eeeEEEeeccc
Confidence 666666653
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.30 E-value=9.5e-12 Score=129.43 Aligned_cols=101 Identities=13% Similarity=-0.001 Sum_probs=51.8
Q ss_pred CCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEE
Q 015025 251 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLL 327 (414)
Q Consensus 251 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~ 327 (414)
++|+.|+++.+......+..+..+++|+.|+++++.+.... ...+..+++|++|++++|..... .....++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 46666666633322222233456677777777776665422 12345567777777777633221 122345666666
Q ss_pred eccCCCceeee----ccCCccceEEeeecc
Q 015025 328 FRSCKYLKVID----VDAPNLLLFTYEFNP 353 (414)
Q Consensus 328 l~~c~~L~~l~----i~~~~L~~l~~~~~~ 353 (414)
++++ .+..+. -..++|+.+++.++.
T Consensus 345 L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 345 LQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 6655 222221 124455555555544
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=7.4e-12 Score=114.44 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=130.4
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ..++ .+..+++|++|++++|.+...+....+++|++|+++++.++.- . -+..+++|++|
T Consensus 41 ~~L~~L~--l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLS--AFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred CCcCEEE--eeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence 6888888 654332 3345 4667899999999999877655577889999999999988432 1 26779999999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
++.+|.......+..+++|+.|++++|. ..+.. ...+++|++|+++.+.... ... +..+++|+.|+++++.+++..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh
Confidence 9998875333335678899999999886 22221 2367889999988554322 221 677889999999888776533
Q ss_pred HHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCC
Q 015025 292 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK 332 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~ 332 (414)
. +..+++|+.|++++|...... ...+++|+.|++++++
T Consensus 190 ~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 P---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp G---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred h---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 2 577889999999887432211 2346677777777653
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=9e-12 Score=113.89 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=68.7
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 238 (414)
+++|++|++++|.+...+....+++|++|+++++.++.-. . +.++++|++|++.+|.....-.+..+++|+.|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence 3445555555554443333444555555555555442111 1 344555555555554422111233345555555554
Q ss_pred cc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-
Q 015025 239 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI- 316 (414)
Q Consensus 239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~- 316 (414)
|. ..+.. ...+++|++|+++.+...... .+..+++|+.|+++++.+++-.. +..+++|+.|++++|......
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh
Confidence 43 11111 123455555555532221111 13445555555555554443111 344555555555554211110
Q ss_pred cccccccceEEeccC
Q 015025 317 KISSNQLKNLLFRSC 331 (414)
Q Consensus 317 ~~~~~~L~~L~l~~c 331 (414)
...+++|+.|+++++
T Consensus 191 l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 191 LASLPNLIEVHLKNN 205 (308)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred hcCCCCCCEEEccCC
Confidence 123445555555444
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=4.8e-12 Score=121.75 Aligned_cols=213 Identities=16% Similarity=0.095 Sum_probs=113.1
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC 224 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~ 224 (414)
-..+|..+. ++++.|++++|.+.... .+..+++|++|+|+++.++... ...+.++++|++|+|.+|..... -.
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhH
Confidence 344554443 45677777776654322 4556677777777766552111 12244567777777766643211 12
Q ss_pred ccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025 225 VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLDLVSVYFADNEFNHLISKF 299 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (414)
+..+++|+.|+++++. +..+. ..+++|++|+++.+.....+.. .+..+++|+.|+++++.++.-. .+..+
T Consensus 132 ~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l 206 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---NLTPL 206 (440)
T ss_dssp SCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---CCTTC
T ss_pred hhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---ccCCC
Confidence 3345677777777664 22221 2456777777763222222111 2445667777777766654321 24556
Q ss_pred CCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEE
Q 015025 300 PSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVS 368 (414)
Q Consensus 300 ~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~ 368 (414)
++|+.|++++|..... ....+++|+.|+++++. +..+. .+.++|+.+++.++.+. .....+++|+.++
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 6777777776632221 12234566666666553 33322 13466677776666532 2233567788887
Q ss_pred EE
Q 015025 369 FV 370 (414)
Q Consensus 369 i~ 370 (414)
+.
T Consensus 286 L~ 287 (440)
T 3zyj_A 286 LH 287 (440)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=7.5e-12 Score=120.82 Aligned_cols=203 Identities=18% Similarity=0.116 Sum_probs=80.8
Q ss_pred cccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEe
Q 015025 161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEI 236 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i 236 (414)
+|++|++++|.+.... .+..+++|+.|+|+++.++... ...+.++++|++|+|.+|..... -.+..+++|+.|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4555555554433221 2344455555555554442110 11123445555555554432110 01223445555555
Q ss_pred eeccccceeee----ecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 237 RSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 237 ~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
+++. +..+. ..+++|++|+++.+.....+.. .+..+++|+.|+++++.++.- ..+..+++|+.|++++|.
T Consensus 155 ~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 155 RNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSC
T ss_pred CCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccccccEEECcCCc
Confidence 5443 11111 1344555555542222111111 133445555555555444321 113344455555555542
Q ss_pred cccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEE
Q 015025 312 LPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFV 370 (414)
Q Consensus 312 ~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~ 370 (414)
.... ....+++|+.|+++++. +..+. -+.++|+.+++.++.+. .....+++|+.+++.
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred CcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 2211 11223445555554432 22211 12344555555554421 112345566666665
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=2.1e-12 Score=119.34 Aligned_cols=213 Identities=15% Similarity=0.055 Sum_probs=137.9
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeecc
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS 226 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~ 226 (414)
...+|..+. +.|++|++++|.+...+ .+..+++|++|+++++.++... ...+.++++|++|++.+|.. ..+...
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~ 118 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEK 118 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChh
Confidence 345665443 57899999998876543 4677899999999988774211 22356788999999988763 333333
Q ss_pred CCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCC
Q 015025 227 KASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP 300 (414)
Q Consensus 227 ~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 300 (414)
..++|+.|+++++. +..+ ...+++|++|+++.+.... .....+..+++|+.|+++++.++.-. ....+
T Consensus 119 ~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~ 192 (330)
T 1xku_A 119 MPKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPP 192 (330)
T ss_dssp CCTTCCEEECCSSC--CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCT
T ss_pred hcccccEEECCCCc--ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC----ccccc
Confidence 34789999998875 2222 2357889999888543321 12223567888999999888765411 11237
Q ss_pred CCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeeccc---ceEeeecCCccEEEEE
Q 015025 301 SLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFV 370 (414)
Q Consensus 301 ~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~ 370 (414)
+|++|++++|..... ....+++|+.|+++++. +..+. -..++|+.+++.++.+ |.....+++|+++++.
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 899999988743322 22346788888888764 33332 2357788888888763 3334567788888887
Q ss_pred Ee
Q 015025 371 CK 372 (414)
Q Consensus 371 ~~ 372 (414)
.+
T Consensus 272 ~N 273 (330)
T 1xku_A 272 NN 273 (330)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=6.3e-12 Score=127.76 Aligned_cols=262 Identities=18% Similarity=0.118 Sum_probs=126.5
Q ss_pred cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+. ...++. .+..+++|++|++++|.+.... ....+++|++|+++++.++. .....+.++++|
T Consensus 25 ~~l~~L~--Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLN--LTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEE--CCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEE--CCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCC
Confidence 4666666 43322 222333 3445667777777766654332 34556677777776665531 111124456777
Q ss_pred cEEEeeccCCCce--eeccCCCCCcEEEeeecc-ccc-eeeeecCCCeeEEEEEeeCCCCceEEe--ecCCCCccEEEee
Q 015025 210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVE--VARSPHLKKLDLV 283 (414)
Q Consensus 210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~-~~l-~~~~~~~p~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 283 (414)
++|++.+|..... -.+.++++|+.|++++|. ... ......+++|++|+++.+......... ...+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 7777766643211 123456677777776664 111 111124666777776643221111111 1234667777776
Q ss_pred ecccchHHHHHHhhcC---------------------------CCCcEEEecCccccccccc---cc--cccceEEeccC
Q 015025 284 SVYFADNEFNHLISKF---------------------------PSLEDLFVTRCCLPGKIKI---SS--NQLKNLLFRSC 331 (414)
Q Consensus 284 ~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~~~~~~~---~~--~~L~~L~l~~c 331 (414)
++.++.... ..+..+ ++|+.|++.+|........ .+ ++|+.|+++++
T Consensus 180 ~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 180 SNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 665443211 111222 3445555554422111111 11 23777777666
Q ss_pred CCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHH----HHhccCcceeEEEEE
Q 015025 332 KYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLK----KFLGVSKQIESLKLS 399 (414)
Q Consensus 332 ~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~----~~l~~~~~L~~L~i~ 399 (414)
. +..+. -..++|+.+++.++.+. ....++++|+.+++..+..........++ ..++++++|++|+++
T Consensus 259 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 259 N-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred C-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 3 22222 23567777777766532 23345677887777532111110001111 245678888888877
Q ss_pred EE
Q 015025 400 LY 401 (414)
Q Consensus 400 ~~ 401 (414)
.+
T Consensus 338 ~n 339 (680)
T 1ziw_A 338 DN 339 (680)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=1.2e-11 Score=114.34 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=25.6
Q ss_pred cccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccC
Q 015025 155 AIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 218 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~ 218 (414)
.+..+++|++|++++|.+...+ ...+++|++|+++++.++. .....+.++++|+.|++.+|.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccc-cCHhHhcCCccccEEECCCCc
Confidence 3334445555555544443221 1112445555554444421 111223445555555554443
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.25 E-value=1.1e-11 Score=113.90 Aligned_cols=227 Identities=18% Similarity=0.140 Sum_probs=148.7
Q ss_pred ccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 158 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
.+++|++|++++|.+.... ....+++|++|+++++.++... . +..+++|++|++.+|. +..+. ..++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence 3678999999998876544 4578889999999888763211 1 5678899999998875 33333 347899999
Q ss_pred eeeccccceee-eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025 236 IRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 314 (414)
Q Consensus 236 i~~~~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 314 (414)
++++. +..+ ...+++|++|+++.+.........+..+++|+.|+++++.++......+...+++|++|++++|....
T Consensus 106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88885 3322 23578899999885554433344556788999999988887764444445567889999998884322
Q ss_pred cc-cccccccceEEeccCCCceeee---ccCCccceEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHh
Q 015025 315 KI-KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL 387 (414)
Q Consensus 315 ~~-~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l 387 (414)
.- ....++|+.|+++++. +..+. ...++|+.+++.++.+. .....+++|+.+++..+.- .. ..+...+
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~-~~---~~~~~~~ 258 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-HC---GTLRDFF 258 (317)
T ss_dssp EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC-BH---HHHHHHH
T ss_pred cccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc-cC---cCHHHHH
Confidence 11 1136788889888763 33332 23677888888887743 2345678899988873321 11 2234445
Q ss_pred ccCcceeEEE
Q 015025 388 GVSKQIESLK 397 (414)
Q Consensus 388 ~~~~~L~~L~ 397 (414)
..+++|+.+.
T Consensus 259 ~~~~~L~~l~ 268 (317)
T 3o53_A 259 SKNQRVQTVA 268 (317)
T ss_dssp HTCHHHHHHH
T ss_pred hccccceEEE
Confidence 5555554443
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=7.5e-12 Score=121.82 Aligned_cols=207 Identities=21% Similarity=0.122 Sum_probs=131.2
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+... ...|..+..+++|++|++++|.+........+++|++|+|+++.++. +...+.|+.|
T Consensus 34 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp GGCCEEE--CCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CCccEEE--eeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 4788888 6543322 22345666788999999999887644447788899999999888742 2235888888
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEeec-CCCCccEEEeeecccch
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVA-RSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 289 (414)
++.+|... .+....+++|+.|++++|. ..... ....+++|++|+++++......+..+. .+++|+.|+++++.++.
T Consensus 105 ~L~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88887643 3333456788888888776 22211 223578888888885443322222232 57888888888887765
Q ss_pred HHHHHHhhcCCCCcEEEecCccccc--cccccccccceEEeccCCCceeeec---cCCccceEEeeecc
Q 015025 290 NEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP 353 (414)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~ 353 (414)
.. ....+++|+.|++++|.... .....+++|+.|+++++. +..++. ..++|+.+++.++.
T Consensus 184 ~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 184 VK---GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EE---CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred cc---ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 31 12347788888888773321 112345678888887753 434432 24667777777665
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.24 E-value=4.3e-12 Score=114.65 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=101.9
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--- 223 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--- 223 (414)
...+|..+ .++|++|+++++.+...+ .+..+++|++|+++++.++... ...+.++++|++|++.+|..+..+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 34455433 357888888887765433 3567788888888777663211 122456788888888877643333
Q ss_pred eccCCCCCcEEEeeecc-ccc-eeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025 224 CVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 301 (414)
Q Consensus 224 ~~~~~~~L~~L~i~~~~-~~l-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (414)
.+..+++|+.|+++++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 178 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS 178 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence 23456788888887775 111 111224677777777744332211122456777777777777665322 123455677
Q ss_pred CcEEEecCccccccc---cccccccceEEeccC
Q 015025 302 LEDLFVTRCCLPGKI---KISSNQLKNLLFRSC 331 (414)
Q Consensus 302 L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c 331 (414)
|+.|++.+|...... ...+++|+.|+++++
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 777777776432221 123456666666554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=7.8e-12 Score=116.63 Aligned_cols=152 Identities=16% Similarity=0.037 Sum_probs=85.3
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
+++++|+ +..+... ...|..+..+++|++|++++|.+...+ ....+++|++|+++++.+..-.....+.++++|+
T Consensus 76 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 76 VNLQALV--LTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCCEEE--CTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCEEE--CCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 5677777 5433221 222344556777888888887766544 2456778888888777663211101345677888
Q ss_pred EEEeeccCCCcee---eccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025 211 DLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 283 (414)
Q Consensus 211 ~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (414)
.|++.+|..+..+ .+.++++|+.|+++++. +..+ ...+++|++|+++.+.........+..+++|+.|+++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 8888777544433 23456777777777764 2211 1245667777776433211111112235666777766
Q ss_pred ecccch
Q 015025 284 SVYFAD 289 (414)
Q Consensus 284 ~~~~~~ 289 (414)
++.++.
T Consensus 231 ~n~l~~ 236 (353)
T 2z80_A 231 DTDLDT 236 (353)
T ss_dssp SCBCTT
T ss_pred CCcccc
Confidence 665543
No 61
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=6.9e-13 Score=125.40 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=92.8
Q ss_pred cCceeeEEEeeeCCCcc---ccCCccccccccccEEEEecccccCC----c-c-------ccCCCCcceEEceeEEechH
Q 015025 133 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQP----F-D-------SIMLCSLKKLTLERVCLDEQ 197 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~l~~~~l~~~----~-~-------~~~l~~L~~L~L~~~~~~~~ 197 (414)
+++++|+ +..+.... ..++..+..+++|++|++++|.+... + . ...+++|++|+|+++.++..
T Consensus 32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 5677777 54332211 12333445567777777777643211 0 1 14567777777777777432
Q ss_pred ---HHHHHHhcCCcccEEEeeccCCCce----ee--ccCC---------CCCcEEEeeeccc---ccee---eeecCCCe
Q 015025 198 ---MVQKLASECPLLEDLCFSNCWGLKH----LC--VSKA---------SKLKIMEIRSFSE---EIEI---VEISVPSL 253 (414)
Q Consensus 198 ---~l~~ll~~~p~Le~L~l~~~~~~~~----~~--~~~~---------~~L~~L~i~~~~~---~l~~---~~~~~p~L 253 (414)
.+...+..+++|+.|+|.+|..... +. +..+ ++|+.|++++|.- .+.. ....+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3444556677777777777653110 00 1112 6777777776641 1111 11245667
Q ss_pred eEEEEEeeCCCCc-----eEEeecCCCCccEEEeeecccchH---HHHHHhhcCCCCcEEEecCcc
Q 015025 254 QQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 254 ~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~ 311 (414)
++|.++.+..... .+..+..+++|+.|+++++.+++. .+...+..+++|+.|+|++|.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 7777664332110 111334566677777766666532 233345566667777776664
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=3.9e-12 Score=126.49 Aligned_cols=228 Identities=17% Similarity=0.126 Sum_probs=162.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+ ....+|..+..+ +|++|++++|.+...+ ...+++|++|++.++........ ..+|+|++|
T Consensus 282 ~~L~~L~--l~~~--~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L 352 (570)
T 2z63_A 282 TNVSSFS--LVSV--TIERVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL 352 (570)
T ss_dssp TTCSEEE--EESC--EECSCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEE
T ss_pred CcccEEE--ecCc--cchhhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCcccccccc---ccCCCCCEE
Confidence 6889998 6543 334688888888 9999999999887443 46889999999999877321111 679999999
Q ss_pred EeeccCCCce----eeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCce-EEeecCCCCccEEEeeecc
Q 015025 213 CFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVY 286 (414)
Q Consensus 213 ~l~~~~~~~~----~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 286 (414)
++.+|..... ..+.++++|+.|++++|. ..+......+++|++|+++.+...... ...+..+++|+.|+++++.
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred eCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 9998875322 123468999999999886 222222447899999999843321111 1235678999999999887
Q ss_pred cchHHHHHHhhcCCCCcEEEecCcccc----ccccccccccceEEeccCCCceee-e---ccCCccceEEeeecccc---
Q 015025 287 FADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQLKNLLFRSCKYLKVI-D---VDAPNLLLFTYEFNPIP--- 355 (414)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~c~~~----~~~~~~~~~L~~L~l~~c~~L~~l-~---i~~~~L~~l~~~~~~~~--- 355 (414)
+.... ...+..+++|+.|++.+|... ......+++|+.|++++|. +..+ + -..++|+.+++.++.+.
T Consensus 433 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 433 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 65432 234577899999999998543 2233457899999999885 3333 2 24688999999888743
Q ss_pred -eEeeecCCccEEEEEE
Q 015025 356 -IISINVPCPWKVSFVC 371 (414)
Q Consensus 356 -~~~~~~~~L~~l~i~~ 371 (414)
....++++|+.+++..
T Consensus 511 ~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp TTTTTTCTTCCEEECCS
T ss_pred HHHhhcccCCcEEEecC
Confidence 2345788999999983
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=8.9e-13 Score=120.85 Aligned_cols=232 Identities=16% Similarity=0.073 Sum_probs=121.5
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHH-------HhcCCcccEEEeeccCCCceee--c--cC
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKL-------ASECPLLEDLCFSNCWGLKHLC--V--SK 227 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------l~~~p~Le~L~l~~~~~~~~~~--~--~~ 227 (414)
.++|++|+++++.+..+.... ..|+.|+++++.+....+... ..++++|++|++.+|...+... + ..
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 345666666666552111111 126666666665521111111 1256777777777775432211 1 45
Q ss_pred CCCCcEEEeeecc-ccceeeeec-----CCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH-HHHHh--hc
Q 015025 228 ASKLKIMEIRSFS-EEIEIVEIS-----VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE-FNHLI--SK 298 (414)
Q Consensus 228 ~~~L~~L~i~~~~-~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~--~~ 298 (414)
+++|+.|+++++. ......... .++|++|+++.+.........+..+++|+.|+++++.+.+.. ..... ..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 6777777777665 111111112 267777777754433222234556777777777777655431 11222 56
Q ss_pred CCCCcEEEecCccccc--cc----cccccccceEEeccCCCceee----eccCCccceEEeeecccc---eEeeecCCcc
Q 015025 299 FPSLEDLFVTRCCLPG--KI----KISSNQLKNLLFRSCKYLKVI----DVDAPNLLLFTYEFNPIP---IISINVPCPW 365 (414)
Q Consensus 299 ~~~L~~L~l~~c~~~~--~~----~~~~~~L~~L~l~~c~~L~~l----~i~~~~L~~l~~~~~~~~---~~~~~~~~L~ 365 (414)
+++|++|++++|.... .+ ....++|+.|+++++.--... ....++|+.++++++.+. .... ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 7777777777764321 11 123467777777766321111 112466777777776632 1111 6788
Q ss_pred EEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 366 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 366 ~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
+++++.+. .+. ++. +..+++|++|+++.+
T Consensus 278 ~L~Ls~N~-l~~-----~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 278 VLDLSYNR-LDR-----NPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECCSSC-CCS-----CCC-TTTSCEEEEEECTTC
T ss_pred EEECCCCC-CCC-----Chh-HhhCCCCCEEeccCC
Confidence 88886442 121 122 677888888877543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.20 E-value=1.2e-11 Score=119.36 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=77.2
Q ss_pred cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---eccCCC
Q 015025 155 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKAS 229 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~~~~ 229 (414)
.+..+++|++|++++|.+.... .+.++++|++|+|+++.++. .....+.++++|++|++.+|.. ..+ .+..++
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~ 171 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVP 171 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCT
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCC
Confidence 3444556666666665543321 34455566666666555421 1111233455666666655542 111 122445
Q ss_pred CCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025 230 KLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 305 (414)
Q Consensus 230 ~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 305 (414)
+|+.|++++|. .+..+. ..+++|++|+++.+.... ++ .+..+++|+.|+++++.++... ...+..+++|+.|
T Consensus 172 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 247 (452)
T 3zyi_A 172 SLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKL 247 (452)
T ss_dssp TCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEE
T ss_pred cccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccC-cccccCccCCCEE
Confidence 56666555543 222221 134555555555332211 11 2344555555555555544321 1223445555555
Q ss_pred EecCcccccc---ccccccccceEEeccC
Q 015025 306 FVTRCCLPGK---IKISSNQLKNLLFRSC 331 (414)
Q Consensus 306 ~l~~c~~~~~---~~~~~~~L~~L~l~~c 331 (414)
++.+|..... ....+++|+.|+++++
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 5555422111 1122345555555544
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.20 E-value=4.2e-12 Score=115.97 Aligned_cols=212 Identities=16% Similarity=0.064 Sum_probs=115.4
Q ss_pred cCceeeEEEeeeCCCccccCCccc-cccccccEEEEecccccCC----ccccCCCCcceEEceeEEechHHHHHHHhcCC
Q 015025 133 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP 207 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p 207 (414)
+++++|+ +..+. ...+|... ..+++|++|++++|.+... .....+++|++|+++++.+.. +...+.+++
T Consensus 28 ~~l~~L~--L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLE--LESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE 101 (306)
T ss_dssp TTCCEEE--CCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred CCCCEEE--CCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence 3566666 44322 23455443 3567777777777765422 133456777777777665521 111144577
Q ss_pred cccEEEeeccCCCce---eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCC-ceEEeecCCCCccE
Q 015025 208 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKK 279 (414)
Q Consensus 208 ~Le~L~l~~~~~~~~---~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 279 (414)
+|++|++.++..... -.+.++++|+.|+++++. +... ...+++|++|+++.+.... ..+..+..+++|+.
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 777777776643111 123356777777777664 2111 1245677777776433222 23334566777777
Q ss_pred EEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee---ccC-CccceEEeeec
Q 015025 280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID---VDA-PNLLLFTYEFN 352 (414)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~---i~~-~~L~~l~~~~~ 352 (414)
|+++++.++... ...+..+++|+.|++++|..... ....+++|+.|+++++.--.... ... ++|+.+++.++
T Consensus 180 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 180 LDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 777777665422 12345667777777777633221 12235677777777663221111 123 36777777666
Q ss_pred c
Q 015025 353 P 353 (414)
Q Consensus 353 ~ 353 (414)
.
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.20 E-value=8.7e-12 Score=126.72 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=28.4
Q ss_pred cCceeeEEEeeeCCCccccCCccccccc--cccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSAN--SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~ 194 (414)
.++++|+ +..+.. ....|..+..++ +|++|++++|.+.... .+..+++|++|+++++.+
T Consensus 222 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 222 TSIRNLS--LSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp SCCCEEE--CTTSCC-CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccccEEE--ccCCcc-cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 5666666 433211 122233333333 3666666666543321 344556666666665554
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=6.1e-12 Score=113.65 Aligned_cols=191 Identities=14% Similarity=0.034 Sum_probs=115.2
Q ss_pred cCceeeEEEeeeCCCccccCC-ccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhcCCc
Q 015025 133 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPL 208 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~ 208 (414)
+++++|+ +..+.. ..++ ..+..+++|++|++++|.+.... .+..+++|++|+++++. ++.. ....+.++++
T Consensus 32 ~~l~~L~--l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIF--LHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR 106 (285)
T ss_dssp TTCSEEE--CTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred CCceEEE--eeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence 4677777 543222 2233 34556788888888887665432 45677888888888875 4211 1222456788
Q ss_pred ccEEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEE
Q 015025 209 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLD 281 (414)
Q Consensus 209 Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 281 (414)
|++|++.+|..... -.+.++++|+.|+++++. +..+ ...+++|++|+++.+... .... .+..+++|+.|+
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEE
Confidence 88888887764322 123456788888888775 2222 125678888888844332 2221 255678888888
Q ss_pred eeecccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCC
Q 015025 282 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK 332 (414)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~ 332 (414)
++++.++... ...+..+++|+.|++++|...... ...+++|+.|++++++
T Consensus 184 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 8887765432 233566788888888887332211 2335677777776653
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.18 E-value=1.3e-10 Score=115.36 Aligned_cols=166 Identities=13% Similarity=0.049 Sum_probs=103.2
Q ss_pred CCCcEEEeeeccccceeee--ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH-HHHHHhhcCCCCcEE
Q 015025 229 SKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDL 305 (414)
Q Consensus 229 ~~L~~L~i~~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L 305 (414)
++|+.|+++++. +..+. ..+++|++|+++.+......+..+..+++|+.|+++++.++.- .+...+..+++|+.|
T Consensus 331 ~~L~~L~l~~n~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTP--FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSC--CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCC--cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 458888888875 22222 4678899999986544443344567889999999998887752 333456788999999
Q ss_pred EecCccccccc----cccccccceEEeccCCCceeeeccC-CccceEEeeeccc---ceEeeecCCccEEEEEEeeecch
Q 015025 306 FVTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNT 377 (414)
Q Consensus 306 ~l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~ 377 (414)
++++|.....+ ....++|+.|+++++.--...+... ++|+.+++.++.+ |.....+++|+.+++..+.-
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l--- 485 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL--- 485 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC---
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC---
Confidence 99988543322 2335678888887774222222222 4677777777652 32223667777777764321
Q ss_pred hHHHhHHH-HhccCcceeEEEEEEEE
Q 015025 378 HWYLKLKK-FLGVSKQIESLKLSLYS 402 (414)
Q Consensus 378 ~~~~~l~~-~l~~~~~L~~L~i~~~~ 402 (414)
..++. .+..+++|+.|+++.++
T Consensus 486 ---~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 486 ---KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ---CCCCTTSTTTCTTCCCEECCSCC
T ss_pred ---CCCCHHHHhcCCCCCEEEecCCC
Confidence 11111 35667777777666443
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=117.26 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=82.0
Q ss_pred ccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCC
Q 015025 156 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASK 230 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~ 230 (414)
+..+++|++|++++|.+...+ .+..+++|++|+|+++.++. .....+.++++|++|++.+|..+..+. +.++++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 334566666666665554332 24455666666666655421 011123455666666666555444332 234556
Q ss_pred CcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecC
Q 015025 231 LKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 309 (414)
Q Consensus 231 L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (414)
|+.|++++|. ..+.. ...+++|++|+++.+......+..+..+++|+.|+++++.++... ...+..+++|+.|+|++
T Consensus 187 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCC
Confidence 6666666554 11111 124456666666533221111223445566666666655554322 12234556666666666
Q ss_pred ccccc---cccccccccceEEeccC
Q 015025 310 CCLPG---KIKISSNQLKNLLFRSC 331 (414)
Q Consensus 310 c~~~~---~~~~~~~~L~~L~l~~c 331 (414)
|.... .....+++|+.|++.+.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCccChhHhccccCCCEEEcCCC
Confidence 52221 11123455666655553
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=1.4e-10 Score=115.48 Aligned_cols=211 Identities=18% Similarity=0.119 Sum_probs=152.1
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+. ...+|. .+++|++|++++|.+...+. .+++|++|+++++.++. +. ...++|++|
T Consensus 81 ~~L~~L~--Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~--lp---~~l~~L~~L 146 (622)
T 3g06_A 81 PELRTLE--VSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS--LP---VLPPGLQEL 146 (622)
T ss_dssp TTCCEEE--ECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC--CC---CCCTTCCEE
T ss_pred CCCCEEE--cCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc--CC---CCCCCCCEE
Confidence 6888888 65433 235665 56899999999998776443 77899999999998742 11 236899999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 292 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (414)
++++|.. ..+.. ..++|+.|.+.++. +..+...+++|+.|+++.+... .++ ..+++|+.|+++++.++.
T Consensus 147 ~Ls~N~l-~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~l~-~l~---~~~~~L~~L~L~~N~l~~--- 215 (622)
T 3g06_A 147 SVSDNQL-ASLPA-LPSELCKLWAYNNQ--LTSLPMLPSGLQELSVSDNQLA-SLP---TLPSELYKLWAYNNRLTS--- 215 (622)
T ss_dssp ECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSS---
T ss_pred ECcCCcC-CCcCC-ccCCCCEEECCCCC--CCCCcccCCCCcEEECCCCCCC-CCC---CccchhhEEECcCCcccc---
Confidence 9998854 33322 35789999999885 4444456789999999954432 222 245899999999887764
Q ss_pred HHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCceeeeccCCccceEEeeeccc---ceEeeecCCccEEEE
Q 015025 293 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPI---PIISINVPCPWKVSF 369 (414)
Q Consensus 293 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i 369 (414)
+...+++|+.|++++|. +..+...+++|+.|+++++ .++.++...++|+.+++.++.+ |....++++|+.|++
T Consensus 216 --l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 216 --LPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp --CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred --cCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 22346889999999883 3345556789999999887 5666666678899999988873 334567889999999
Q ss_pred EEe
Q 015025 370 VCK 372 (414)
Q Consensus 370 ~~~ 372 (414)
..+
T Consensus 292 ~~N 294 (622)
T 3g06_A 292 EGN 294 (622)
T ss_dssp CSC
T ss_pred cCC
Confidence 744
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=1.9e-11 Score=109.64 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=89.1
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|. +..+.. ..++ .+..+++|++|++++|.+........+++|++|+++++.++. .....+.+++.|++|
T Consensus 41 ~~L~~L~--l~~~~i--~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 41 NSIDQII--ANNSDI--KSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKEL 114 (272)
T ss_dssp TTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEE
T ss_pred cceeeee--eCCCCc--cccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEE
Confidence 5666666 433221 2222 355567777777777766554455667777777777766631 112223556777777
Q ss_pred EeeccCCCceee--ccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc
Q 015025 213 CFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 286 (414)
Q Consensus 213 ~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (414)
++.+|....... +..+++|+.|++++|. +..+. ..+++|++|+++.+.........+..+++|+.|+++++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCc--cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 777665322111 3345677777776664 22111 245666666666433322111123455666666666655
Q ss_pred cchHHHHHHhhcCCCCcEEEecCc
Q 015025 287 FADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
++... ...+..+++|+.|++.+|
T Consensus 193 l~~~~-~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 193 LKSVP-DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCccC-HHHHhCCcCCCEEEccCC
Confidence 54321 123345566666666655
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.14 E-value=1.9e-11 Score=115.40 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=115.7
Q ss_pred cCceeeEEEeeeCC--CccccCCccc-------cccccccEEEEecccccCCc------cccCCCCcceEEceeEEechH
Q 015025 133 NGVRELDFENITDE--NTVYTLPQAI-------FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQ 197 (414)
Q Consensus 133 ~~l~~L~~~l~~~~--~~~~~l~~~l-------~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~~~~ 197 (414)
+++++|+ +..+. .....+|..+ ..+++|++|++++|.+.... ....+++|++|+|++|.++..
T Consensus 60 ~~L~~L~--Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 60 KDLEIAE--FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TTCCEEE--CCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred CCccEEe--CcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 5777777 54321 1122334333 46778888888887766521 335677888888888877433
Q ss_pred H---HHHHHhcC---------CcccEEEeeccCCC-cee-----eccCCCCCcEEEeeecccc------cee-eeecCCC
Q 015025 198 M---VQKLASEC---------PLLEDLCFSNCWGL-KHL-----CVSKASKLKIMEIRSFSEE------IEI-VEISVPS 252 (414)
Q Consensus 198 ~---l~~ll~~~---------p~Le~L~l~~~~~~-~~~-----~~~~~~~L~~L~i~~~~~~------l~~-~~~~~p~ 252 (414)
. +...+..+ +.|++|.+.+|... ..+ .+..+++|+.|++++|.-. +.. ....+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 2 33333444 78888888777642 111 1224678888888877511 111 2235678
Q ss_pred eeEEEEEeeCCC----CceEEeecCCCCccEEEeeecccchHHHH---HHhhc--CCCCcEEEecCccccc----ccc--
Q 015025 253 LQQLTLLFYGAR----RPRVVEVARSPHLKKLDLVSVYFADNEFN---HLISK--FPSLEDLFVTRCCLPG----KIK-- 317 (414)
Q Consensus 253 L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~--~~~L~~L~l~~c~~~~----~~~-- 317 (414)
|++|+++++... ..++..+..+++|+.|+++++.+++.... ..+.. +++|+.|+|++|.... .+.
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 888888754331 22233456678888888888877665333 33322 7788888888774433 122
Q ss_pred --ccccccceEEeccCC
Q 015025 318 --ISSNQLKNLLFRSCK 332 (414)
Q Consensus 318 --~~~~~L~~L~l~~c~ 332 (414)
..+++|+.|++++|+
T Consensus 298 l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHCTTCCEEECTTSB
T ss_pred HHhcCCCceEEEccCCc
Confidence 235777777777663
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=7.4e-12 Score=112.32 Aligned_cols=186 Identities=15% Similarity=0.067 Sum_probs=131.4
Q ss_pred cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEE
Q 015025 157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIM 234 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L 234 (414)
..+++|+.|.++++.+........+++|++|+++++.++.- . .+..+++|++|.+.+|....... +..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34678999999999887666678899999999999988431 2 36789999999999886432221 4567999999
Q ss_pred Eeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 235 EIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 235 ~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
++++|. +..+ ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++.+|
T Consensus 115 ~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 115 VLVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp ECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred ECCCCc--CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCC
Confidence 999886 2222 235789999999965443222223567899999999999876432 234567899999999998
Q ss_pred cccccc---cccccccceEEeccCCCceeeeccCCccceEEeeec
Q 015025 311 CLPGKI---KISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFN 352 (414)
Q Consensus 311 ~~~~~~---~~~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~ 352 (414)
...... ...+++|+.|++.+++-. -.+|.++.+...++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWIN 232 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHH
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHH
Confidence 433222 234688999999887422 23555665554443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=3.6e-11 Score=107.67 Aligned_cols=168 Identities=17% Similarity=0.073 Sum_probs=81.2
Q ss_pred ccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEE
Q 015025 160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 235 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~ 235 (414)
++|++|+++++.+...+ .+..+++|++|+++++.++. ....++.++++|++|++.++..... -.+.++++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 45666666666654433 34556666666666665521 1112234566666666666543111 1123456666666
Q ss_pred eeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 236 IRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 236 i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
++++. +..+ ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++++|.
T Consensus 116 l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 116 LDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCc--cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCc
Confidence 66553 1111 124556666666633221111111345566666666665554321 1123445666666666652
Q ss_pred cccc---ccccccccceEEeccC
Q 015025 312 LPGK---IKISSNQLKNLLFRSC 331 (414)
Q Consensus 312 ~~~~---~~~~~~~L~~L~l~~c 331 (414)
.... ....+++|+.|++.++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCHHHhccccCCCEEEecCC
Confidence 2111 1122445555555543
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.14 E-value=4.7e-11 Score=108.12 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=105.0
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ..++ .+..+++|++|++++|.+........+++|+.|+++++.++. +.. +..+++|+.|
T Consensus 46 ~~L~~L~--l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQII--ANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred CcccEEE--ccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence 5777777 543322 2333 356678888888888877655456778888888888887732 222 5678888888
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
++.+|.....-.+..+++|+.|++++|. ..+ .....+++|++|+++.+....... +..+++|+.|+++++.+++-
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l- 193 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 193 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence 8887764332234456788888888775 222 112256777777777443322212 56677777777777766552
Q ss_pred HHHHhhcCCCCcEEEecCcc
Q 015025 292 FNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~ 311 (414)
..+..+++|+.|++.+|+
T Consensus 194 --~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 --RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GGGTTCTTCSEEEEEEEE
T ss_pred --hhhccCCCCCEEECcCCc
Confidence 125667777777777763
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=1.6e-11 Score=113.45 Aligned_cols=254 Identities=14% Similarity=0.024 Sum_probs=122.3
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
++++.|+ +..+... .-.|..+..+++|++|++++|.+.... .+..+++|++|+++++.++. +.. ...+.|+
T Consensus 54 ~~l~~L~--l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~ 126 (332)
T 2ft3_A 54 PDTTLLD--LQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLV 126 (332)
T ss_dssp TTCCEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCC
T ss_pred CCCeEEE--CCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCC
Confidence 4566666 4432211 112334555677777777776654331 35566777777777666531 110 1125677
Q ss_pred EEEeeccCCCce--eeccCCCCCcEEEeeeccc-c--ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeec
Q 015025 211 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSE-E--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 285 (414)
Q Consensus 211 ~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~-~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 285 (414)
+|++.+|..... -.+.++++|+.|+++++.- . .........+|++|+++.+... .++.. ..++|+.|+++++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~--~~~~L~~L~l~~n 203 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLDHN 203 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSS--SCSSCSCCBCCSS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCcc--ccCCCCEEECCCC
Confidence 777766653211 1134566777777766641 0 1111111115666666633221 11111 2256666666666
Q ss_pred ccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee---ccCCccceEEeeecccc-e--
Q 015025 286 YFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP-I-- 356 (414)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~~-~-- 356 (414)
.++.... ..+..+++|+.|++++|..... ....+++|+.|+++++. +..++ ...++|+.+++.++.+. .
T Consensus 204 ~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 204 KIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccCh
Confidence 5543221 2234556666666666532221 12234566666666552 33332 13456666666665522 0
Q ss_pred -Eee------ecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025 357 -ISI------NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY 401 (414)
Q Consensus 357 -~~~------~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~ 401 (414)
... ..++|+.+.+..... .. ....+..+..+++|+.+.++.+
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~-~~--~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPV-PY--WEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSS-CG--GGSCGGGGTTBCCSTTEEC---
T ss_pred hHccccccccccccccceEeecCcc-cc--cccCcccccccchhhhhhcccc
Confidence 010 135677777763321 11 1112344667777777776543
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=6.1e-12 Score=116.30 Aligned_cols=212 Identities=15% Similarity=0.046 Sum_probs=123.1
Q ss_pred ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccC
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK 227 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~ 227 (414)
..+|..+. ++|++|++++|.+...+ ....+++|++|+++++.++... ...+.++++|++|++.+|.. ..+....
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL 121 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc
Confidence 45565443 57888888887765432 4567788888888877663211 12245678888888877753 2332222
Q ss_pred CCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCc
Q 015025 228 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 303 (414)
Q Consensus 228 ~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 303 (414)
.++|+.|+++++. ..+.. ....+++|++|+++.+.... .....+..+ +|+.|+++++.++.-. ....++|+
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~----~~~~~~L~ 196 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP----KDLPETLN 196 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC----SSSCSSCS
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC----ccccCCCC
Confidence 3678888887775 11111 12356778888877433311 111223334 7777887777665411 01236788
Q ss_pred EEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeeccc---ceEeeecCCccEEEEEE
Q 015025 304 DLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFVC 371 (414)
Q Consensus 304 ~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~ 371 (414)
+|++++|..... ....+++|+.|+++++. +..+. -..++|+.+++.++.+ |.....+++|+.+++..
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence 888887733222 12345678888887663 32222 2356778888777763 33345677888888863
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.14 E-value=6.1e-12 Score=115.23 Aligned_cols=194 Identities=16% Similarity=0.106 Sum_probs=104.6
Q ss_pred ccccccEEEEecccccCC-c-cc--cCCCCcceEEceeEEechH--HHHHHHh-cCCcccEEEeeccCCCcee--eccCC
Q 015025 158 SANSVTNLRLVWCRLEQP-F-DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKHL--CVSKA 228 (414)
Q Consensus 158 ~~~~L~~L~l~~~~l~~~-~-~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~~p~Le~L~l~~~~~~~~~--~~~~~ 228 (414)
.+++|++|++++|.+... + .. ..+++|++|+++++.++.. .+..+.. ..++|++|++.+|...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 567888888888876532 2 22 6778888888888877432 2222111 1277788877777532211 12345
Q ss_pred CCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEE
Q 015025 229 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLF 306 (414)
Q Consensus 229 ~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~ 306 (414)
++|+.|+++++. ....+. ......+..+++|+.|+++++.++. .....++..+++|+.|+
T Consensus 173 ~~L~~L~Ls~N~-l~~~~~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 173 PALSTLDLSDNP-ELGERG-----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp SSCCEEECCSCT-TCHHHH-----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred CCCCEEECCCCC-cCcchH-----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 566666666553 000000 0000112456677777777766653 22334445667777777
Q ss_pred ecCccccccc----cccccccceEEeccCCCceeeeccC-CccceEEeeecccc--eEeeecCCccEEEEE
Q 015025 307 VTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPIP--IISINVPCPWKVSFV 370 (414)
Q Consensus 307 l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~~--~~~~~~~~L~~l~i~ 370 (414)
+++|...... ....++|+.|+++++. ++.++... ++|+.+++.++.+. -....+++|+.+++.
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLK 304 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECT
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEecc
Confidence 7776433321 1224677777776653 33333211 46777777766633 113356677777765
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=5.7e-11 Score=101.06 Aligned_cols=145 Identities=20% Similarity=0.203 Sum_probs=67.1
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCc--eeeccCCCCCcEEEe
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEI 236 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~i 236 (414)
+++|++|+++++.+...+....+++|++|+++++.+..- . .+..+++|++|++.+|.... .-.+..+++|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344555555555444322344445555555555433111 1 13345555555555544321 112234455555555
Q ss_pred eecc-cc-ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 237 RSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 237 ~~~~-~~-l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
++|. .. .......+++|++|+++++.....++ .+..+++|+.|+++++.+++-. .+..+++|+.|++.++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 5553 00 01111234555555555332112222 3455666666666666655422 3455666666666665
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.12 E-value=1e-10 Score=104.99 Aligned_cols=181 Identities=17% Similarity=0.090 Sum_probs=104.2
Q ss_pred ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--
Q 015025 148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-- 223 (414)
Q Consensus 148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-- 223 (414)
...++|..+. ++|++|++++|.+...+ .+..+++|++|+++++.++... ...+.++++|+.|++.+|......
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChh
Confidence 3455665443 57899999988765433 4567888999999888763211 122456888899988887642221
Q ss_pred eccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchHH--HHHHhhc
Q 015025 224 CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNE--FNHLISK 298 (414)
Q Consensus 224 ~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 298 (414)
.+.++++|+.|++.++. ..+.. ....+++|++|+++.+.... .++..+..+++|+.|+++++.++... ....+..
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 24457888888888775 12211 12256777777777443322 12334566777888888777665421 1112233
Q ss_pred CCCCc-EEEecCccccccc--cccccccceEEeccC
Q 015025 299 FPSLE-DLFVTRCCLPGKI--KISSNQLKNLLFRSC 331 (414)
Q Consensus 299 ~~~L~-~L~l~~c~~~~~~--~~~~~~L~~L~l~~c 331 (414)
++.|. .|+++++...... .....+|+.|+++++
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 33333 6777766322111 111235666666655
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=1.4e-11 Score=115.37 Aligned_cols=153 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred cccccEEEEecccccCCc------cccCCC-CcceEEceeEEech---HHHHHHHhcC-CcccEEEeeccCCCceee---
Q 015025 159 ANSVTNLRLVWCRLEQPF------DSIMLC-SLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCWGLKHLC--- 224 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~~~~~~~~~--- 224 (414)
.++|++|++++|.+.... ....++ +|++|+|+++.+++ ..+..++..+ +.|++|++.+|.......
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 344666666666554332 123445 56666666665532 2333333333 666666666654211100
Q ss_pred ---ccCC-CCCcEEEeeecc-ccc--eeee--e-c-CCCeeEEEEEeeCCCCc----eEEeecCCC-CccEEEeeecccc
Q 015025 225 ---VSKA-SKLKIMEIRSFS-EEI--EIVE--I-S-VPSLQQLTLLFYGARRP----RVVEVARSP-HLKKLDLVSVYFA 288 (414)
Q Consensus 225 ---~~~~-~~L~~L~i~~~~-~~l--~~~~--~-~-~p~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~~~ 288 (414)
+..+ ++|+.|++++|. ... ..+. . . .++|++|+++++...+. +...+...+ +|+.|+++++.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 1122 466666666554 000 0000 0 1 23566666663332211 111112333 6666666666554
Q ss_pred hH---HHHHHhhcCC-CCcEEEecCcc
Q 015025 289 DN---EFNHLISKFP-SLEDLFVTRCC 311 (414)
Q Consensus 289 ~~---~~~~~~~~~~-~L~~L~l~~c~ 311 (414)
+. .+...+..++ +|++|++++|.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 32 2333444453 67777776663
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=1.7e-10 Score=111.16 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=64.4
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ..+| .+..+++|++|++++|.+...+ ...++|++|+++++.++. +.. +.++++|++|
T Consensus 131 ~~L~~L~--L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLG--VSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAI 200 (454)
T ss_dssp TTCCEEE--CCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEE
Confidence 4788888 554333 2466 4667888888888888766432 233578888887776632 221 4667777777
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEE
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 259 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~ 259 (414)
.+.+|...+ +.. ..++|+.|++++|. ..+.. ...+++|++|+++
T Consensus 201 ~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 201 YADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp ECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECC
T ss_pred ECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECC
Confidence 777765322 111 12456666665554 11111 1144555555555
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=7e-10 Score=106.86 Aligned_cols=157 Identities=17% Similarity=0.032 Sum_probs=92.5
Q ss_pred ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025 160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 239 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 239 (414)
++|++|++++|.+...+....+++|++|+++++.++. +. ...+.|++|++.+|.....-.+.++++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4666666666665543345566677777777666531 11 123467777777665322223446778888888777
Q ss_pred cccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccccc
Q 015025 240 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS 319 (414)
Q Consensus 240 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~ 319 (414)
. +..+....++|++|+++.+... .++ .++.+++|+.|+++++.++. +....++|+.|++++|... .+...
T Consensus 206 ~--l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~l~-~l~~~ 275 (454)
T 1jl5_A 206 S--LKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLT-DLPEL 275 (454)
T ss_dssp C--CSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSCCS-CCCCC
T ss_pred c--CCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCccc-ccCcc
Confidence 4 3223333468888888854432 333 36788889999988877654 1123467777877776322 23223
Q ss_pred ccccceEEeccC
Q 015025 320 SNQLKNLLFRSC 331 (414)
Q Consensus 320 ~~~L~~L~l~~c 331 (414)
.++|+.|+++++
T Consensus 276 ~~~L~~L~ls~N 287 (454)
T 1jl5_A 276 PQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred cCcCCEEECcCC
Confidence 455666666554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=110.78 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCceeeEEEeeeCCCccccCCccc--cccccccEEEEecccccCCc------cccCCCCcceEEceeEE
Q 015025 122 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC 193 (414)
Q Consensus 122 ~~~~w~~~~~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~ 193 (414)
.+..........++++|+ +..+.. ....|..+ ..+++|++|++++|.+.... ....+++|++|+++++.
T Consensus 80 ~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 80 LLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 344444444446788888 544322 23444444 55777888888887765421 12357777777777776
Q ss_pred echHHHHHHHhcCCcccEEEeeccCCCce------eeccCCCCCcEEEeeecc-ccceee----eecCCCeeEEEEEeeC
Q 015025 194 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYG 262 (414)
Q Consensus 194 ~~~~~l~~ll~~~p~Le~L~l~~~~~~~~------~~~~~~~~L~~L~i~~~~-~~l~~~----~~~~p~L~~L~l~~~~ 262 (414)
+.. .....+.++++|++|++++|...+. .....+++|+.|++++|. ..+... ...+++|++|+++.+.
T Consensus 157 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 157 SPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp SCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred cch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 621 1112244677777777777764321 112346677777777664 111111 1244666666666433
Q ss_pred CCCceEEeecCC---CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 263 ARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 263 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
.....+..+..+ ++|+.|+++++.++. +.. .-+++|+.|++++|
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N 282 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSN 282 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSC
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCC
Confidence 322212222233 566666666665542 111 11256666666655
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=1.8e-10 Score=104.35 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=125.2
Q ss_pred cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEe
Q 015025 157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 236 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i 236 (414)
..+++|++|++++|.+...+....+++|++|+++++.++... . +.++++|+.|.+.+|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 357889999999998876656778999999999999884322 1 7789999999999987533333567899999999
Q ss_pred eecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc
Q 015025 237 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 315 (414)
Q Consensus 237 ~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 315 (414)
++|. ..+. ....+++|++|+++.+.... . ..+..+++|+.|+++++.+++... +..+++|+.|++++|....-
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC
Confidence 9886 2221 12368999999999654432 2 346789999999999998876432 77899999999999833211
Q ss_pred -ccccccccceEEeccCC
Q 015025 316 -IKISSNQLKNLLFRSCK 332 (414)
Q Consensus 316 -~~~~~~~L~~L~l~~c~ 332 (414)
....+++|+.|++++++
T Consensus 194 ~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCc
Confidence 13346789999888763
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=9.1e-11 Score=103.01 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=48.5
Q ss_pred ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhcCCcccEEEeeccCCCceee--
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 224 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~-- 224 (414)
.++|. + .++|++|+++++.+...+ .+..+++|++|+++++. ++.- ....+.++++|++|++.+|..+..+.
T Consensus 24 ~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 44554 2 237888888887765433 34567777777777764 4210 01123456777777776644443332
Q ss_pred -ccCCCCCcEEEeeecc
Q 015025 225 -VSKASKLKIMEIRSFS 240 (414)
Q Consensus 225 -~~~~~~L~~L~i~~~~ 240 (414)
+.++++|+.|+++++.
T Consensus 100 ~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG 116 (239)
T ss_dssp SEECCTTCCEEEEEEEC
T ss_pred HhCCCCCCCEEeCCCCC
Confidence 2245666666666654
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=1.3e-10 Score=115.51 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=122.4
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
++++.|. +..+. ...++ .+..+++|+.|+|++|.+...+....+++|+.|+|+++.+.. +. .+..+++|+.|
T Consensus 43 ~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 43 NSIDQII--ANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSL 114 (605)
T ss_dssp TTCCCCB--CTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEE
T ss_pred CCCCEEE--CcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEE
Confidence 5778887 54332 23344 467789999999999988765557889999999999998843 12 36779999999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 291 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (414)
+|.+|.....-.+..+++|+.|++++|. ..+ .....+++|+.|+++.+......+ +..+++|+.|+|+++.+.+-
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 9998875433335568999999999886 222 122367899999999654433222 67899999999999888763
Q ss_pred HHHHhhcCCCCcEEEecCccc
Q 015025 292 FNHLISKFPSLEDLFVTRCCL 312 (414)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~c~~ 312 (414)
..+..+++|+.|+|.+|+.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEE
T ss_pred --hHHccCCCCCEEEccCCcC
Confidence 3467889999999998843
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=1.1e-10 Score=116.21 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=125.9
Q ss_pred cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEe
Q 015025 157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 236 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i 236 (414)
..+++|+.|++++|.+...+....+++|+.|+|+++.+..... +..+++|+.|.|.+|.....-.+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 4567899999999988776667889999999999998843221 7789999999999987533334557899999999
Q ss_pred eecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc-
Q 015025 237 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG- 314 (414)
Q Consensus 237 ~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~- 314 (414)
++|. ..+.. ...+++|+.|.++.+.... + ..+..+++|+.|+|+++.+.+... +..+++|+.|+|++|....
T Consensus 117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISDING-LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCCCGG-GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCCcc-ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC
Confidence 9886 22211 2368999999999654432 2 346789999999999998876432 6789999999999983322
Q ss_pred cccccccccceEEeccCC
Q 015025 315 KIKISSNQLKNLLFRSCK 332 (414)
Q Consensus 315 ~~~~~~~~L~~L~l~~c~ 332 (414)
.....+++|+.|++++|+
T Consensus 191 ~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGTTCTTCSEEECCSEE
T ss_pred hHHccCCCCCEEEccCCc
Confidence 112346789999888763
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=1.9e-10 Score=104.12 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=34.2
Q ss_pred ccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEE
Q 015025 160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME 235 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~ 235 (414)
++++.|++++|.+.... .+..+++|+.|+++++.++.-.. ...++.|+.|++.++... .+ .+.++++|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 35556666655543321 34455555555555554421000 034555555555554321 11 112345555555
Q ss_pred eeec
Q 015025 236 IRSF 239 (414)
Q Consensus 236 i~~~ 239 (414)
++++
T Consensus 107 l~~N 110 (290)
T 1p9a_G 107 VSFN 110 (290)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5544
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.03 E-value=1.4e-10 Score=103.80 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=120.3
Q ss_pred cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+. ...++. .+..+++|++|++++|.+...+ .+..+++|++|+++++.+..- ....+.++++|
T Consensus 37 ~~l~~L~--l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLD--LQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEE--CCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred CCCCEEE--CcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence 4688888 65432 234443 4566899999999999876544 346789999999999887421 12335678999
Q ss_pred cEEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025 210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 283 (414)
Q Consensus 210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (414)
++|.+.++..... ..+..+++|+.|+++++. +..+ ...+++|++|+++.+.........+..+++|+.|+++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 9999998864222 124568999999999885 2222 2357899999998554332222235678999999999
Q ss_pred ecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 284 SVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
++.++... ...+..+++|+.|++.+|+
T Consensus 190 ~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NNQLKRVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCC-HHHhccccCCCEEEecCCC
Confidence 98876422 2345678999999999875
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.02 E-value=1.5e-10 Score=101.56 Aligned_cols=192 Identities=16% Similarity=0.074 Sum_probs=111.0
Q ss_pred cCceeeEEEeeeCCCccccCCc-cccccccccEEEEeccc-ccCCc--cccCCCCcceEEcee-EEechHHHHHHHhcCC
Q 015025 133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECP 207 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~-l~~~~--~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p 207 (414)
.++++|+ +..+. ...+|. .+..+++|++|++++|. +...+ .+..+++|++|++++ +.++.- ....+.+++
T Consensus 31 ~~l~~L~--l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLK--LIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP 105 (239)
T ss_dssp TTCCEEE--EESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred CcccEEE--EeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence 3677787 54432 234444 44568899999999886 54332 456888999999988 554211 112245788
Q ss_pred cccEEEeeccCCCceeeccCCCCCc---EEEeeeccccceeee----ecCCCee-EEEEEeeCCCCceEEeecCCCCccE
Q 015025 208 LLEDLCFSNCWGLKHLCVSKASKLK---IMEIRSFSEEIEIVE----ISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKK 279 (414)
Q Consensus 208 ~Le~L~l~~~~~~~~~~~~~~~~L~---~L~i~~~~~~l~~~~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~ 279 (414)
+|++|++.+|.....-.+..+++|+ .|+++++. .+..+. ..+++|+ +|+++.+... .++......++|+.
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 9999999888643221234456666 88888772 222222 2466777 7777643321 22221112367777
Q ss_pred EEeeecc-cchHHHHHHhhcC-CCCcEEEecCccccccccccccccceEEeccCC
Q 015025 280 LDLVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK 332 (414)
Q Consensus 280 L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~ 332 (414)
|+++++. ++.-. ...+..+ ++|+.|+++++....--...+++|+.|.+.++.
T Consensus 184 L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 184 VYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred EEcCCCCCcccCC-HHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 7777773 54211 2234556 777888877763322112246677777766554
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.02 E-value=2.7e-10 Score=96.80 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=97.0
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+.. ..+| .+..+++|++|++++|.+........+++|++|+++++.++...... +..+++|+.|
T Consensus 44 ~~L~~L~--l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYIT--LANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HTCCEEE--EESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred CCccEEe--ccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 5777887 554332 2455 46677888888888887665556677888888888888775333222 4568888888
Q ss_pred EeeccCCCc--eeeccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025 213 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 288 (414)
Q Consensus 213 ~l~~~~~~~--~~~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (414)
++.+|.... .-.+..+++|+.|++++|. .+..+ ...+|+|++|+++.+...+ .. .+..+++|+.|+++++.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 888876533 2234467888888888874 12222 2367888888888554422 22 5678899999999888764
No 93
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.99 E-value=1.9e-10 Score=74.80 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=33.9
Q ss_pred cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhhc
Q 015025 7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV 46 (414)
Q Consensus 7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~ 46 (414)
..+.++.||+|++.+||+|||.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999997643
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=7.2e-11 Score=107.98 Aligned_cols=135 Identities=12% Similarity=0.024 Sum_probs=67.3
Q ss_pred cccccEEEEecccccCCc--cc--cCCCCcceEEceeEEechHH--HH-HHHhcCCcccEEEeeccCCCcee--eccCCC
Q 015025 159 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKHL--CVSKAS 229 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~--~~--~~l~~L~~L~L~~~~~~~~~--l~-~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~ 229 (414)
+++|++|++++|.+.... .. ..+++|++|+++++.++... +. .-+..+++|++|++.+|...... .+.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456788888777754322 22 56777777777777763210 11 11235677777777766532211 122345
Q ss_pred CCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEEe
Q 015025 230 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFV 307 (414)
Q Consensus 230 ~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l 307 (414)
+|+.|+++++. ...... ......++.+++|+.|+++++.++. .....++..+++|++|++
T Consensus 170 ~L~~L~Ls~N~-l~~~~~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 170 ALTSLDLSDNP-GLGERG-----------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp TCCEEECCSCT-TCHHHH-----------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred CCCEEECCCCC-Cccchh-----------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 55555555553 000000 0000112345566666666665542 111223455666666666
Q ss_pred cCcc
Q 015025 308 TRCC 311 (414)
Q Consensus 308 ~~c~ 311 (414)
++|.
T Consensus 232 s~N~ 235 (310)
T 4glp_A 232 SHNS 235 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 6663
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.94 E-value=9e-11 Score=109.79 Aligned_cols=58 Identities=19% Similarity=0.030 Sum_probs=27.8
Q ss_pred cccEEEEecccccCCc--cccC-----CCCcceEEceeEEech---HHHHHHHhcC-CcccEEEeeccC
Q 015025 161 SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCW 218 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~--~~~~-----l~~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~~~ 218 (414)
+|++|++++|.+.... .... +++|++|+|+++.+++ ..+...+..+ +.|++|++.+|.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 5666666655544322 1111 2556666666555522 2233333344 556666665554
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.94 E-value=1.7e-10 Score=103.54 Aligned_cols=192 Identities=15% Similarity=0.060 Sum_probs=119.0
Q ss_pred cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
+++++|+ +..+.. ..++. .+..+++|++|++++|.+.... .+..+++|++|+++++.++... ...+.++++|
T Consensus 28 ~~l~~L~--ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLD--LSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL 102 (276)
T ss_dssp TTCCEEE--CTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTC
T ss_pred CCccEEE--CCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccc
Confidence 4678888 543322 23333 5566889999999998765433 4667889999999988773211 1234678999
Q ss_pred cEEEeeccCCCc--eeeccCCCCCcEEEeeecc-cc--ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCcc----EE
Q 015025 210 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KL 280 (414)
Q Consensus 210 e~L~l~~~~~~~--~~~~~~~~~L~~L~i~~~~-~~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L 280 (414)
++|.+.+|.... ...+..+++|+.|+++++. .. +......+++|++|+++++.........+..+++|+ .|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 999998876422 2335567899999998886 11 122233678999999985433221111233444555 78
Q ss_pred EeeecccchHHHHHHhhcCCCCcEEEecCccccc---cccccccccceEEeccC
Q 015025 281 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSC 331 (414)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c 331 (414)
+++++.++.... ......+|+.|++++|.... .....+++|+.|++++.
T Consensus 183 ~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 183 DLSLNPMNFIQP--GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECT--TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ecCCCcccccCc--cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 888877654221 12233479999998874221 11234567777777754
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.93 E-value=4.4e-10 Score=101.65 Aligned_cols=82 Identities=18% Similarity=0.075 Sum_probs=37.7
Q ss_pred ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcE
Q 015025 156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKI 233 (414)
Q Consensus 156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~ 233 (414)
+..+++|++|++++|.+...+....+++|++|+++++.+. .+...+.++++|+.|.+.+|..... -.+.++++|+.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 3345555555555555443322344555555555555542 1112234455555555555532111 11233455555
Q ss_pred EEeeec
Q 015025 234 MEIRSF 239 (414)
Q Consensus 234 L~i~~~ 239 (414)
|+++++
T Consensus 129 L~L~~N 134 (290)
T 1p9a_G 129 LYLKGN 134 (290)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 555554
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=3.7e-10 Score=99.92 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=98.4
Q ss_pred ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--e
Q 015025 148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L 223 (414)
Q Consensus 148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~ 223 (414)
....+|..+. ++|+.|+++++.+.... .+..+++|++|+|+++.++. .....+.++++|+.|++.+|..... -
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChh
Confidence 3456665544 57888999888865543 45678888888888887732 1122345678888888887764221 1
Q ss_pred eccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025 224 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 299 (414)
Q Consensus 224 ~~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (414)
.+..+++|+.|+++++. +..+. ..+++|++|+++.+.........++.+++|+.|+++++.++... ...+..+
T Consensus 102 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l 178 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRL 178 (251)
T ss_dssp TTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred HhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCC
Confidence 23356788888888775 22221 24677777777744332211223456777888888777665322 1234567
Q ss_pred CCCcEEEecCcc
Q 015025 300 PSLEDLFVTRCC 311 (414)
Q Consensus 300 ~~L~~L~l~~c~ 311 (414)
++|+.|++.+|+
T Consensus 179 ~~L~~L~l~~N~ 190 (251)
T 3m19_A 179 GKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEeeCCc
Confidence 777788777763
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.86 E-value=1.3e-09 Score=97.10 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=97.8
Q ss_pred cccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEE
Q 015025 155 AIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 234 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L 234 (414)
.+..+++|++|++++|.+...+....+++|+.|+++++.++... . +.++++|+.|++++|.....-.... ++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence 34567889999999988766556678889999999988884222 1 6788999999998886432212223 788888
Q ss_pred Eeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 235 EIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 235 ~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
++++|. ..+.. ...+++|+.|+++.+.... .. .+..+++|+.|+++++.+++. ..+..+++|+.|++++|+
T Consensus 112 ~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 112 FLDNNELRDTDS-LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECCSSCCSBSGG-GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EccCCccCCChh-hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 888775 22211 2256777777777433321 22 355677778888777776654 345667777777777763
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.81 E-value=1.7e-09 Score=95.53 Aligned_cols=168 Identities=13% Similarity=0.012 Sum_probs=112.7
Q ss_pred ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEee
Q 015025 160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIR 237 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~ 237 (414)
.+.++++++++.+...+ ..-.++|+.|+++++.++... ...+.++++|++|++.+|...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccC-CCCCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45778888888776544 222378999999999883211 123567999999999998643221 24467899999999
Q ss_pred eccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025 238 SFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 313 (414)
Q Consensus 238 ~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 313 (414)
++. +..+ ...+++|++|+++.+....-....+..+++|+.|+++++.++.-. ...+..+++|+.|++++|...
T Consensus 92 ~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 92 NNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CCc--ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCC
Confidence 885 2222 236789999999855443222222467889999999988776422 223567889999999988433
Q ss_pred cc---ccccccccceEEeccCC
Q 015025 314 GK---IKISSNQLKNLLFRSCK 332 (414)
Q Consensus 314 ~~---~~~~~~~L~~L~l~~c~ 332 (414)
.. ....+++|+.|++.+++
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 22 22345678888877653
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=7.1e-10 Score=98.76 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=115.3
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 238 (414)
...++.++++++.+........+++|++|+++++.++.- . -+..+++|++|++.+|.......+..+++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 345666666666665444466789999999999988422 2 3677999999999998653333366789999999998
Q ss_pred cc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc-cc
Q 015025 239 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KI 316 (414)
Q Consensus 239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~ 316 (414)
+. ..+..+.. ++|++|+++.+.... . ..+..+++|+.|+++++.+++-. .+..+++|+.|++++|.... ..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~ 167 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGG 167 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTT
T ss_pred CccCCcCcccc--CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHH
Confidence 86 22222222 899999999654432 2 24678899999999999887642 46778999999999884322 22
Q ss_pred cccccccceEEeccC
Q 015025 317 KISSNQLKNLLFRSC 331 (414)
Q Consensus 317 ~~~~~~L~~L~l~~c 331 (414)
...+++|+.|+++++
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 234677888888765
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=7.7e-09 Score=101.85 Aligned_cols=181 Identities=13% Similarity=0.000 Sum_probs=114.1
Q ss_pred HhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 131 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 131 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
...+++.|+ +..+.. ..+|..++ ++|++|++++|.+...+ ..+++|++|+++++.++. +.. +. .+|+
T Consensus 57 ~~~~L~~L~--Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~ 123 (571)
T 3cvr_A 57 LINQFSELQ--LNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLK 123 (571)
T ss_dssp HHTTCSEEE--CCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCC
T ss_pred ccCCccEEE--eCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCC
Confidence 346888888 654332 34776554 78999999999887544 667899999999988743 332 22 2899
Q ss_pred EEEeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH
Q 015025 211 DLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 290 (414)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 290 (414)
.|++++|.... +.. .+++|+.|++++|. +..+...+++|++|+++.+.... ++. +. ++|+.|++++|.++.-
T Consensus 124 ~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp EEECCSSCCSC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred EEECCCCcCCC-CCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 99998886432 333 56889999998885 33333356789999988554322 333 33 7899999988877631
Q ss_pred HH-H-HHhhcCCCCcEEEecCccc--cccccccccccceEEeccCC
Q 015025 291 EF-N-HLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK 332 (414)
Q Consensus 291 ~~-~-~~~~~~~~L~~L~l~~c~~--~~~~~~~~~~L~~L~l~~c~ 332 (414)
.. . .+....+.|+.|++++|.. +.......++|+.|++++++
T Consensus 196 p~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 11 0 0011112228888888732 22212236678888887764
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.77 E-value=1.7e-09 Score=89.32 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchHHH--HHHhhcCCCCcEEEecCcc
Q 015025 250 VPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 250 ~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~ 311 (414)
+++|++|+++.+.... +....+..+++|+.|+++++.++.... ...+..+++|+.|++.+|.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4455555555332211 011234567777777777776654321 2355667777777777663
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.76 E-value=2.4e-09 Score=91.72 Aligned_cols=89 Identities=20% Similarity=0.090 Sum_probs=52.7
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--e
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C 224 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~ 224 (414)
..++|..+ .++|++|+++++.+...+ .+..+++|++|+++++.++. .....+.++++|++|++.+|...... .
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 34455443 347888888888766443 24577888888888776631 11222456777777777776532111 1
Q ss_pred ccCCCCCcEEEeeecc
Q 015025 225 VSKASKLKIMEIRSFS 240 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~~ 240 (414)
+..+++|+.|+++++.
T Consensus 96 ~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCccCCCEEEcCCCc
Confidence 2345666666666553
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=8.7e-09 Score=84.95 Aligned_cols=105 Identities=21% Similarity=0.063 Sum_probs=77.7
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+......+|..+..+++|++|++++|.+........+++|++|+++++.+... +.....++++|+.|
T Consensus 24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 5788888 65544433477877778899999999999876655567889999999999988432 45556679999999
Q ss_pred EeeccCCCce---eeccCCCCCcEEEeeecc
Q 015025 213 CFSNCWGLKH---LCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 213 ~l~~~~~~~~---~~~~~~~~L~~L~i~~~~ 240 (414)
++.+|..... ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9998864221 234456788888887775
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.71 E-value=1.5e-08 Score=94.14 Aligned_cols=64 Identities=20% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc-ccccccceEEeccCCCceeee
Q 015025 274 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVID 338 (414)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~L~~l~ 338 (414)
.++|+.+.+..+..........+..+++|+.|++++|. ++.+. ..+.+|+.|.+.++.+++.++
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC
Confidence 34566666643221111111234556677777777663 22222 235566666666666666554
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=8.3e-10 Score=89.20 Aligned_cols=35 Identities=23% Similarity=0.042 Sum_probs=19.2
Q ss_pred ccccEEEEeccccc--CCc-cccCCCCcceEEceeEEe
Q 015025 160 NSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 160 ~~L~~L~l~~~~l~--~~~-~~~~l~~L~~L~L~~~~~ 194 (414)
++|++|++++|.+. ..+ ....+++|+.|+++++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 54 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL 54 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence 56677777776655 211 234555555555555544
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=6.9e-09 Score=83.70 Aligned_cols=105 Identities=21% Similarity=0.135 Sum_probs=80.8
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
+++++|+ +..+......+|..+..+++|++|++++|.+........+++|++|+++++.++.. +...+.++++|+.|
T Consensus 17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 5788888 65544333478877788999999999999877655677899999999999998532 55667779999999
Q ss_pred EeeccCCCce---eeccCCCCCcEEEeeecc
Q 015025 213 CFSNCWGLKH---LCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 213 ~l~~~~~~~~---~~~~~~~~L~~L~i~~~~ 240 (414)
++.+|..... ..+..+++|+.|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999874331 234567889999888875
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=3.7e-08 Score=91.50 Aligned_cols=220 Identities=12% Similarity=0.028 Sum_probs=138.6
Q ss_pred CccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee
Q 015025 147 NTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC 224 (414)
Q Consensus 147 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~ 224 (414)
..-.++|..+. +++++|+|+++.++..+ .+.++++|++|+|+++.+....-...+.+++.|.++.+..+..+..+.
T Consensus 19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 34457776653 58999999999876544 467899999999999875211111224568888887666666565543
Q ss_pred ---ccCCCCCcEEEeeecc-ccceee-eecCCCeeEEEEEeeCCCCceEE-eecCC-CCccEEEeeecccchHHHHHHhh
Q 015025 225 ---VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV-EVARS-PHLKKLDLVSVYFADNEFNHLIS 297 (414)
Q Consensus 225 ---~~~~~~L~~L~i~~~~-~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 297 (414)
+..+++|+.|+++++. ..+... .....++..+.+..+.....+.. .+..+ ..++.|+++++.++.-. ....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~--~~~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--NSAF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--TTSS
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC--hhhc
Confidence 4467999999999886 222211 23456777888873333222221 12233 46889999998876411 1122
Q ss_pred cCCCCcEEEecCcccccccc----ccccccceEEeccCCCceeeecc-CCccceEEeeecc----cceEeeecCCccEEE
Q 015025 298 KFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP----IPIISINVPCPWKVS 368 (414)
Q Consensus 298 ~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~i~-~~~L~~l~~~~~~----~~~~~~~~~~L~~l~ 368 (414)
..++|++|.+.++..++.+. ...++|+.|+++++ .++.++.+ ..+|+++...+.. +| ...++++|+.++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~ 252 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEAS 252 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEE
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCc
Confidence 34679999998776555553 34678999999876 46666543 3456666654433 22 223567888888
Q ss_pred EEEe
Q 015025 369 FVCK 372 (414)
Q Consensus 369 i~~~ 372 (414)
+.+.
T Consensus 253 l~~~ 256 (350)
T 4ay9_X 253 LTYP 256 (350)
T ss_dssp CSCH
T ss_pred CCCC
Confidence 7643
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.58 E-value=2.8e-08 Score=86.41 Aligned_cols=136 Identities=16% Similarity=0.057 Sum_probs=76.3
Q ss_pred ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025 148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 224 (414)
Q Consensus 148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~- 224 (414)
....+|..+. ++|++|++++|.+.... .+..+++|+.|+|+++.++. .....+.++++|+.|+|.+|.. ..+.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l-~~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL-TVLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcC-CccCh
Confidence 3455565443 67888888888766542 35667778888887776621 1112234567777777766643 2211
Q ss_pred --ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCC
Q 015025 225 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 302 (414)
Q Consensus 225 --~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 302 (414)
+..+++|+.|+++++. +. .++..+..+++|+.|+++++.++.-. ...+..+++|
T Consensus 106 ~~~~~l~~L~~L~Ls~N~--l~---------------------~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 161 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK--LT---------------------ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSL 161 (229)
T ss_dssp TTTTTCTTCCEEECCSSC--CC---------------------SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred hHhCcchhhCeEeccCCc--cc---------------------ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence 2234556666555543 11 22222345667777777666654321 1234556777
Q ss_pred cEEEecCcc
Q 015025 303 EDLFVTRCC 311 (414)
Q Consensus 303 ~~L~l~~c~ 311 (414)
+.|++.+|+
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 777777664
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=4e-08 Score=91.23 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=84.5
Q ss_pred HHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeecc---ccceeee-ecCCCeeEEEEEeeCC--C-Cc-e--
Q 015025 198 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVE-ISVPSLQQLTLLFYGA--R-RP-R-- 267 (414)
Q Consensus 198 ~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~---~~l~~~~-~~~p~L~~L~l~~~~~--~-~~-~-- 267 (414)
.+..++..+|+|++|.|.++.......+. .++|+.|++..|. ..+..+. ..+|+|++|.++.+.. . .. +
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 45677888999999999887433222222 5899999998775 1122222 2689999999863111 0 10 1
Q ss_pred ---EEeecCCCCccEEEeeecccchHHHHHHh--hcCCCCcEEEecCcccccc----cc---ccccccceEEeccC
Q 015025 268 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPGK----IK---ISSNQLKNLLFRSC 331 (414)
Q Consensus 268 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~----~~---~~~~~L~~L~l~~c 331 (414)
......+|+|+.|.+..+.+.+.....+. ..+|+|++|+|+.|..... +. ..+++|+.|+++.|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11113589999999998888765433333 3578999999987632221 11 24678888888766
No 112
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=7.7e-08 Score=78.82 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=72.4
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhc---CCcccEEEeeccCCCce
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH 222 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---~p~Le~L~l~~~~~~~~ 222 (414)
...+|..-.....|++|++++|.++... ...+|++|++|+|++|. +++..+..+... |+.|++|+|++|..++.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3456654444567999999999876543 45689999999999996 599999998763 78999999999987654
Q ss_pred e---eccCCCCCcEEEeeecc
Q 015025 223 L---CVSKASKLKIMEIRSFS 240 (414)
Q Consensus 223 ~---~~~~~~~L~~L~i~~~~ 240 (414)
- .+..+++|++|++++|+
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 2 23468999999999987
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.55 E-value=1.1e-08 Score=87.49 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=94.2
Q ss_pred cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCCCcEEEeeec
Q 015025 163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF 239 (414)
Q Consensus 163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~ 239 (414)
+.++.+++.+...+ ....++|++|+++++.++. .....+.++++|++|++.++... .+. +..+++|+.|+++++
T Consensus 10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 34555555444332 2345789999999998742 22233567899999999987542 222 345789999999887
Q ss_pred cccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc
Q 015025 240 SEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 315 (414)
Q Consensus 240 ~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 315 (414)
. +..+ ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++.+|+..
T Consensus 87 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 87 Q--LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp C--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC--
T ss_pred c--CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee--
Confidence 5 2222 125677888888744332211112456778888888777665322 223456777888888776322
Q ss_pred ccccccccceEEec
Q 015025 316 IKISSNQLKNLLFR 329 (414)
Q Consensus 316 ~~~~~~~L~~L~l~ 329 (414)
..+++|+.|++.
T Consensus 162 --~~~~~l~~L~~~ 173 (208)
T 2o6s_A 162 --CTCPGIRYLSEW 173 (208)
T ss_dssp --CCTTTTHHHHHH
T ss_pred --cCCCCHHHHHHH
Confidence 234455555443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.54 E-value=1.8e-08 Score=87.09 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=47.0
Q ss_pred ccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--e
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C 224 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~ 224 (414)
..+|..+. ..+++|+++++.+.... .+..+++|++|+|+++.++.-. ...+.++++|++|++.+|...... .
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence 44555443 34677777777765432 2456777777777776652111 112345666777766666432211 1
Q ss_pred ccCCCCCcEEEeeec
Q 015025 225 VSKASKLKIMEIRSF 239 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~ 239 (414)
+.++++|+.|+++++
T Consensus 101 ~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 101 FKGLESLKTLMLRSN 115 (220)
T ss_dssp GTTCSSCCEEECTTS
T ss_pred hcCCcCCCEEECCCC
Confidence 334556666666555
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.53 E-value=3.9e-08 Score=98.71 Aligned_cols=218 Identities=17% Similarity=0.087 Sum_probs=111.9
Q ss_pred cccccEEEEecccccCCc---------------------cccCCCCcceEEceeEEec-hHHHHHHHhcCCcccEEEeec
Q 015025 159 ANSVTNLRLVWCRLEQPF---------------------DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSN 216 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~---------------------~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~Le~L~l~~ 216 (414)
+..|+.|++.+|.+.... ....+++|+.|+++.+.+. ..........++.|+.|.+..
T Consensus 327 ~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred chhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 456777777776543321 1223455555555544331 011111123445555555544
Q ss_pred cCCCce-eeccCCCCCcEEEeeecc-ccc--eeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025 217 CWGLKH-LCVSKASKLKIMEIRSFS-EEI--EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 292 (414)
Q Consensus 217 ~~~~~~-~~~~~~~~L~~L~i~~~~-~~l--~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (414)
+..... .....+++|+.+.+..+. ... ......+++++.+.++.+.........+..++.|+.|+++++.......
T Consensus 407 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 407 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence 432111 112234566666665443 000 0111244566666655322211112223456788888887765443333
Q ss_pred HHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeee---c-cCCccceEEeeecccc----eEeeec
Q 015025 293 NHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID---V-DAPNLLLFTYEFNPIP----IISINV 361 (414)
Q Consensus 293 ~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~---i-~~~~L~~l~~~~~~~~----~~~~~~ 361 (414)
...+..+++|+.|+|++|...... ...+++|+.|+++++ ++..+. + +.++|+.++++++.+. ....++
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 334566788888888887432221 234567888888776 344332 2 3577888888887632 223344
Q ss_pred -CCccEEEEE-Eeeecch
Q 015025 362 -PCPWKVSFV-CKGVLNT 377 (414)
Q Consensus 362 -~~L~~l~i~-~~~~~~~ 377 (414)
++|+.+++. ++..++.
T Consensus 566 ~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTCCEEECTTCCBCCSG
T ss_pred hCcCCEEEeeCCCCcccC
Confidence 578899887 4445544
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.51 E-value=9.9e-09 Score=87.13 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=74.6
Q ss_pred cccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCC
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA 228 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~ 228 (414)
...+|..+..+++|++|++++|.+...+....+++|+.|+++++.++ .+...+..+++|+.|++.+|.....-.+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 34455566667888888888877665445566778888888888774 2333344456677777766642211112223
Q ss_pred CCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchH---------HHHHHhhc
Q 015025 229 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---------EFNHLISK 298 (414)
Q Consensus 229 ~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~ 298 (414)
++|+.|+++++. ... +....+..+++|+.|+++++.+... .....+..
T Consensus 115 ~~L~~L~l~~N~----------------------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 115 VNLRVLYMSNNK----------------------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HHSSEEEESEEE----------------------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCCCEEECCCCc----------------------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 444444444432 111 0001234567777777776655332 22334566
Q ss_pred CCCCcEEE
Q 015025 299 FPSLEDLF 306 (414)
Q Consensus 299 ~~~L~~L~ 306 (414)
+|+|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 77777776
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.51 E-value=3.9e-08 Score=84.91 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=73.7
Q ss_pred ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025 148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 224 (414)
Q Consensus 148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~- 224 (414)
...++|..+. ++|+.|+++++.+...+ .+..+++|+.|+|+++.++.. ....+.++++|+.|+|++|... .+.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 3445565443 57888888888765433 456677888888887766311 1122455677777777766532 211
Q ss_pred --ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCC
Q 015025 225 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 302 (414)
Q Consensus 225 --~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 302 (414)
+.++++|+.|+++++. +..+ .+..+..+++|+.|+++++.++... ...+..+++|
T Consensus 98 ~~f~~l~~L~~L~L~~N~--l~~~--------------------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 154 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANK--INCL--------------------RVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAI 154 (220)
T ss_dssp TTTTTCTTCCEEECCSSC--CCCC--------------------CTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred hHccCCCCCCEEECCCCC--CCEe--------------------CHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCC
Confidence 2345566666666553 1111 1112334556666666655544321 1223445666
Q ss_pred cEEEecCc
Q 015025 303 EDLFVTRC 310 (414)
Q Consensus 303 ~~L~l~~c 310 (414)
+.|++.+|
T Consensus 155 ~~L~L~~N 162 (220)
T 2v9t_B 155 QTMHLAQN 162 (220)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 66666655
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=1e-07 Score=95.57 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=111.0
Q ss_pred cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025 159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238 (414)
Q Consensus 159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 238 (414)
..+++.+.+.++.+..........+|+.|.+.++.+.... ...++.|+.+.+..+..........+++|+.|.++.
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp GTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred hcccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhc
Confidence 3445555555544333223344556666666666552111 113445555555544332222222456666666655
Q ss_pred ccc-cceee---eecCCCeeEEEEEeeCCCCceEEe-------------------------ecCCCCccEEEeeecccch
Q 015025 239 FSE-EIEIV---EISVPSLQQLTLLFYGARRPRVVE-------------------------VARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 239 ~~~-~l~~~---~~~~p~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~~~ 289 (414)
+.- ..... ....++|+++.+..+.. ...... +..+++++.++++.+.+..
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred cccccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 430 00000 01234455544442111 001111 2334455555554444322
Q ss_pred HHHHHHhhcCCCCcEEEecCcccccc----ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eE
Q 015025 290 NEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----II 357 (414)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~ 357 (414)
.. ...+..+++|+.|++.+|..... .....++|+.|++++| .++.+. -+.++|+.++++++.+. ..
T Consensus 460 ~~-~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 460 AF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp CC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred cc-ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 11 12345567777777777643332 2233567788888777 344443 23567788888777632 23
Q ss_pred eeecCCccEEEEEEeeecchhHHHhHHHHhccC-cceeEEEEEEEE
Q 015025 358 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVS-KQIESLKLSLYS 402 (414)
Q Consensus 358 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~-~~L~~L~i~~~~ 402 (414)
..++++|+.|+++.+.-.+ ..+..++++ ++|+.|+++.++
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCC
T ss_pred HhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCC
Confidence 4467788888876332100 012234455 578877776443
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=1e-06 Score=81.65 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhcCCcccceEEEEEEecccC-CCh-hHHHHHHHHHH-hcCceeeEEEeeeCCCc--------cccCCc
Q 015025 86 FMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSA-PIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLPQ 154 (414)
Q Consensus 86 ~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~~-~~~~~w~~~~~-~~~l~~L~~~l~~~~~~--------~~~l~~ 154 (414)
+.+.+.++|.. .....++++.+..-. +. ... ..+..++..+. .++|+.|. +...... ...+..
T Consensus 93 ~~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~~ 166 (362)
T 2ra8_A 93 GVNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLSP 166 (362)
T ss_dssp TCCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCHH
T ss_pred HHHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHHH
Confidence 34455555521 223456666655321 22 111 23444443332 27899988 5321111 113444
Q ss_pred cccccccccEEEEeccc-ccCCccccCCCCcceEEceeEEechHHHHHHHh-cCCcccEEEeeccCC--CceeeccCCCC
Q 015025 155 AIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG--LKHLCVSKASK 230 (414)
Q Consensus 155 ~l~~~~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~~~~--~~~~~~~~~~~ 230 (414)
.+..+++|+.|.++++. +..+. ...++|++|++..+.++.+.+..+.. .+|+|+.|.|..+.. .....+. .
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~---~ 241 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN---V 241 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG---G
T ss_pred HHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH---H
Confidence 55567889999998873 32222 24788999999888887777776653 689999988853211 0000000 0
Q ss_pred CcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCc---eEEeecCCCCccEEEeeecccchHHHHHH---hhcCCCCc
Q 015025 231 LKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRP---RVVEVARSPHLKKLDLVSVYFADNEFNHL---ISKFPSLE 303 (414)
Q Consensus 231 L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~ 303 (414)
+.. .+. ..+|+|++|.+..|...+. .....+.+|+|+.|+|+.+.+.+.....+ +.++++|+
T Consensus 242 l~~-----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 242 FRP-----------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp TGG-----------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred HHH-----------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 000 000 1245555555543222110 00111346788888888887777554333 34578888
Q ss_pred EEEecCccc
Q 015025 304 DLFVTRCCL 312 (414)
Q Consensus 304 ~L~l~~c~~ 312 (414)
.|+++.|..
T Consensus 311 ~L~L~~n~i 319 (362)
T 2ra8_A 311 FINMKYNYL 319 (362)
T ss_dssp EEECCSBBC
T ss_pred EEECCCCcC
Confidence 888887743
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.44 E-value=1.3e-07 Score=93.21 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=112.0
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 212 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 212 (414)
++++.|+ +..+.. ..+| ..+++|++|++++|.+...+. -..+|++|+++++.++. +.. .+++|+.|
T Consensus 80 ~~L~~L~--Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLE--ITQNAL--ISLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI 145 (571)
T ss_dssp TTCSEEE--CCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred CCCCEEE--CcCCCC--cccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence 5799999 655433 3666 346899999999998876433 22399999999998843 222 68999999
Q ss_pred EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCc-------cEEEeee
Q 015025 213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS 284 (414)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~ 284 (414)
++++|... .+.. .+++|+.|++++|. ..+.. + .++|++|+++.+... .++. +.. +| +.|++++
T Consensus 146 ~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~--l-~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 146 NADNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE--L-PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp ECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC--C-CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred eCCCCccC-cCCC-cCCCcCEEECCCCCCCCcch--h-hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 99988743 3333 46899999999986 23333 2 289999999965442 3333 322 66 9999999
Q ss_pred cccchHHHHHHhhcCCCCcEEEecCccccccccc
Q 015025 285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI 318 (414)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~ 318 (414)
|.++. +...+..+++|+.|+|++|+....+..
T Consensus 217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 217 NRITH--IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred Cccee--cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 98874 223345589999999999966554433
No 121
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=1.6e-08 Score=94.58 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=25.6
Q ss_pred cCCCCccEEEeeecccchHHH---HHHhhcCCCCcEEEecCcc
Q 015025 272 ARSPHLKKLDLVSVYFADNEF---NHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~ 311 (414)
...++|+.|++++|.+++... ...+...++|++|+|++|.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 345677777777777766433 3334456777777777764
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.42 E-value=9e-08 Score=82.61 Aligned_cols=147 Identities=15% Similarity=0.025 Sum_probs=90.0
Q ss_pred cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc
Q 015025 163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS 240 (414)
Q Consensus 163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~ 240 (414)
+.++++++.+...+ ..-.+.++.|+++++.++.......+.++++|+.|++.++...... .+.++++|+.|+++++.
T Consensus 14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46777777665433 1223567888888877632211223466888888888877632211 24467788888888775
Q ss_pred -cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025 241 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 311 (414)
Q Consensus 241 -~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 311 (414)
..+.. ....+++|++|.++.+......+..+..+++|+.|+++++.++... ...+..+++|+.|++.+|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 11111 1225678888888854443222334567788888888887765432 2335567888888888774
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.41 E-value=8e-08 Score=89.59 Aligned_cols=154 Identities=22% Similarity=0.184 Sum_probs=96.2
Q ss_pred cccCCccccccccccEEEEecccccCCc--ccc-CCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-- 223 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-- 223 (414)
-..+|..+. +.++.|+|++|.+...+ .+. .+++|++|+|+++.++.-. ...+.++++|+.|+|++|.. ..+
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCH
Confidence 345565443 35788888888765433 233 7888888888888773211 12245688888888888763 332
Q ss_pred -eccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEe-e---cCCCCccEEEeeecccchHHHHH
Q 015025 224 -CVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVE-V---ARSPHLKKLDLVSVYFADNEFNH 294 (414)
Q Consensus 224 -~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~ 294 (414)
.+.++++|+.|+++++. +..+ ...+++|++|+++.+... .++.. + ..+++|+.|+++++.++.-.. .
T Consensus 106 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~ 181 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-T 181 (361)
T ss_dssp TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH-H
T ss_pred HHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH-H
Confidence 23457888888888875 3322 225688888888854332 22211 1 457889999998887764322 2
Q ss_pred HhhcCCC--CcEEEecCc
Q 015025 295 LISKFPS--LEDLFVTRC 310 (414)
Q Consensus 295 ~~~~~~~--L~~L~l~~c 310 (414)
.+..+++ ++.|++.+|
T Consensus 182 ~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHHSCHHHHTTEECCSS
T ss_pred HhhhccHhhcceEEecCC
Confidence 3445565 477888876
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.39 E-value=7.9e-08 Score=82.98 Aligned_cols=145 Identities=10% Similarity=-0.087 Sum_probs=81.9
Q ss_pred cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeecc
Q 015025 163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~ 240 (414)
+.++.+++.+...+. .-.++|+.|+++++.++.- ....+.++++|+.|+|.+|..... -.+.++++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666665554331 1225788888877766311 111234566666666666543111 112234455555554442
Q ss_pred ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---cc
Q 015025 241 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IK 317 (414)
Q Consensus 241 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~ 317 (414)
...-....+..+++|+.|+++++.++... ...+..+++|+.|+|++|..... ..
T Consensus 92 ----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 92 ----------------------ITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp ----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------------------CCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 21111112457889999999998876532 23456789999999999843322 23
Q ss_pred ccccccceEEeccCC
Q 015025 318 ISSNQLKNLLFRSCK 332 (414)
Q Consensus 318 ~~~~~L~~L~l~~c~ 332 (414)
..+++|+.|++.+.+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 346788888887764
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.38 E-value=1e-07 Score=82.84 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=87.6
Q ss_pred ccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCCCcEEEeee
Q 015025 162 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS 238 (414)
Q Consensus 162 L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~i~~ 238 (414)
-+.++.+++.+...+ ..-.++|++|+|+++.++.. ....+.++++|+.|+|.+|.. ..+. +.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 456676666655443 22347888888888877321 122345677788887777653 2221 22345555555554
Q ss_pred ccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc---c
Q 015025 239 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---K 315 (414)
Q Consensus 239 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~ 315 (414)
+. ...-....+..+++|+.|+++++.++. +...+..+++|+.|++++|.... .
T Consensus 98 N~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 98 NQ----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred Cc----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHH
Confidence 42 111111124578899999999988763 22335788999999999984322 2
Q ss_pred ccccccccceEEeccCC
Q 015025 316 IKISSNQLKNLLFRSCK 332 (414)
Q Consensus 316 ~~~~~~~L~~L~l~~c~ 332 (414)
....+++|+.|++.+.+
T Consensus 154 ~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEEeeCCC
Confidence 23346788889887754
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=6e-08 Score=80.53 Aligned_cols=130 Identities=13% Similarity=-0.014 Sum_probs=61.0
Q ss_pred cccccccEEEEecccccCCccccCC-CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025 157 FSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 235 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 235 (414)
..+.+|++|++++|.+...+....+ ++|+.|+++++.++.- ..+..+++|+.|++++|.. ..+..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~---------- 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGE---------- 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECS----------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCc----------
Confidence 4567778888877766543322222 3666666666554211 1223344444444444431 11110
Q ss_pred eeeccccceeeeecCCCeeEEEEEeeCCCCceEE--eecCCCCccEEEeeecccchH--HHHHHhhcCCCCcEEEecCc
Q 015025 236 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVV--EVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 236 i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~c 310 (414)
.+...+|+|++|+++.+.. ..++. .+..+++|+.|+++++.++.. .....+..+|+|+.|++..+
T Consensus 82 ---------~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 82 ---------GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ---------CHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ---------chhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 0001334444444442222 11111 234566677777766655431 11223556677777777665
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=3.6e-08 Score=83.63 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=53.4
Q ss_pred CCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025 228 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 306 (414)
Q Consensus 228 ~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 306 (414)
+++|+.|++++|. ..+......+|+|++|+++.+.... ++ .+..+++|+.|+++++.++.......+..+++|++|+
T Consensus 69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 4455555555443 1111112234677778777554422 22 3567899999999999888644435678899999999
Q ss_pred ecCccc
Q 015025 307 VTRCCL 312 (414)
Q Consensus 307 l~~c~~ 312 (414)
+.+|+.
T Consensus 147 l~~N~l 152 (198)
T 1ds9_A 147 LAGNPL 152 (198)
T ss_dssp ECSCHH
T ss_pred ecCCcc
Confidence 999844
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=2.8e-07 Score=76.40 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=48.9
Q ss_pred cCCCeeEEEEEeeCCCCceEEe-ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc--c----cccccc
Q 015025 249 SVPSLQQLTLLFYGARRPRVVE-VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K----IKISSN 321 (414)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~----~~~~~~ 321 (414)
.+++|++|+++.+... .++.. +..+++|+.|+++++.+..-.....+..+++|+.|++.+|+... . ....++
T Consensus 62 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140 (176)
T ss_dssp CCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred cCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC
Confidence 4556666666633321 22212 35788999999988887553222346678889999998874322 1 123356
Q ss_pred ccceEEeccC
Q 015025 322 QLKNLLFRSC 331 (414)
Q Consensus 322 ~L~~L~l~~c 331 (414)
+|+.|+++.+
T Consensus 141 ~L~~Ld~~~n 150 (176)
T 1a9n_A 141 QVRVLDFQKV 150 (176)
T ss_dssp TCSEETTEEC
T ss_pred ccceeCCCcC
Confidence 6666666554
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=8.2e-09 Score=101.96 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=96.0
Q ss_pred cccccccEEEEecccccCCc-cccCCCCcceEEceeEEe------------chHHHHHHHhcCCcccEEE-eeccCC--C
Q 015025 157 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL------------DEQMVQKLASECPLLEDLC-FSNCWG--L 220 (414)
Q Consensus 157 ~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~~p~Le~L~-l~~~~~--~ 220 (414)
..++.|+.|+++++.+...+ ....|++|+.|+++++.. ........+.++++|+.|+ +..+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45778888888887765433 456677777777755431 1122334455566666665 222210 0
Q ss_pred ceee-----cc--CCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025 221 KHLC-----VS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 292 (414)
Q Consensus 221 ~~~~-----~~--~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (414)
..+. +. ....|+.|+++++. ..++. ...+++|+.|+++.+... .++..++.+++|+.|+++++.++.-
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-- 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-- 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--
Confidence 0000 00 01357777777665 22222 235667777777744332 4444566777777777777776652
Q ss_pred HHHhhcCCCCcEEEecCccccc----cccccccccceEEeccC
Q 015025 293 NHLISKFPSLEDLFVTRCCLPG----KIKISSNQLKNLLFRSC 331 (414)
Q Consensus 293 ~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~L~~L~l~~c 331 (414)
. .+..+++|+.|+|++|.... .....+++|+.|+++++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 2 45667777777777763222 22234567777777765
No 130
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.26 E-value=3.6e-07 Score=80.97 Aligned_cols=36 Identities=22% Similarity=0.552 Sum_probs=34.1
Q ss_pred cccCCCChHHHHHHhcCCChhhHH-hhhccccchhhh
Q 015025 9 DRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQL 44 (414)
Q Consensus 9 d~i~~LPdevL~~I~s~L~~~~~~-~~~~vskrWr~l 44 (414)
..+..||+|++.+||+|||.++++ ++++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 578899999999999999999999 999999999976
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.24 E-value=1.6e-07 Score=87.62 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=105.8
Q ss_pred cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHh-cCCcccEEEeeccCCCcee---eccCCCCCcEEEeee
Q 015025 163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS 238 (414)
Q Consensus 163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~ 238 (414)
+.++.+++.+...+ ..-.+.++.|+|+++.++.-.. ..+. ++++|+.|+|.+|.. ..+ .+.++++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence 56777777766543 2234569999999998842221 1233 789999999998864 333 245689999999998
Q ss_pred ccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHh---hcCCCCcEEEecCcc
Q 015025 239 FSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCC 311 (414)
Q Consensus 239 ~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~ 311 (414)
+. +..+. ..+++|++|+++.+.........+..+++|+.|+++++.++.-.. ..+ ..+++|+.|+|++|.
T Consensus 98 N~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSC
T ss_pred Cc--CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCC
Confidence 85 43332 367899999999544322112346688999999999998765221 122 568999999999884
Q ss_pred ccccc---cccccc--cceEEeccC
Q 015025 312 LPGKI---KISSNQ--LKNLLFRSC 331 (414)
Q Consensus 312 ~~~~~---~~~~~~--L~~L~l~~c 331 (414)
...-- ....+. ++.|++.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCccCHHHhhhccHhhcceEEecCC
Confidence 32211 112233 366777664
No 132
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.3e-06 Score=71.50 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=48.3
Q ss_pred CeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc-cchHHHHHHhhc---CCCCcEEEecCcccccccc----cccccc
Q 015025 252 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKIK----ISSNQL 323 (414)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~~~----~~~~~L 323 (414)
+|++|++++|...+.....+.+|++|++|+|+++. +++..+..+... +++|++|+|++|+.++.-+ ..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555433222222224567777777777664 666665554432 3567777777776554422 236677
Q ss_pred ceEEeccCCCcee
Q 015025 324 KNLLFRSCKYLKV 336 (414)
Q Consensus 324 ~~L~l~~c~~L~~ 336 (414)
+.|++++|+.+..
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 7777777766543
No 133
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.17 E-value=3.3e-07 Score=80.21 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=32.4
Q ss_pred ccCCCChHHHHHHhcCCChhhHHhhhccccchhh
Q 015025 10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ 43 (414)
Q Consensus 10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~ 43 (414)
.|++||+||+.+|||||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999995
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=1.4e-07 Score=88.05 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=105.1
Q ss_pred HHHHhcCceeeEEEeeeCCCcc---ccCCccccc-cccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHH
Q 015025 128 RLAVENGVRELDFENITDENTV---YTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ 200 (414)
Q Consensus 128 ~~~~~~~l~~L~~~l~~~~~~~---~~l~~~l~~-~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~ 200 (414)
...+.+.+++|+ +..+.... ..+...+.. +++|++|+|++|.+.... ....+++|++|+|++|.+++....
T Consensus 67 ~~~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 67 SAEVLSSLRQLN--LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHHHTTCCEEE--CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHHHHhhCCEEE--ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 334446888888 65443322 223333332 368999999998775432 334567899999999988665555
Q ss_pred HHH----hcCCcccEEEeeccCCCc----ee--eccCCCCCcEEEeeecc---ccc---eeeeecCCCeeEEEEEeeCCC
Q 015025 201 KLA----SECPLLEDLCFSNCWGLK----HL--CVSKASKLKIMEIRSFS---EEI---EIVEISVPSLQQLTLLFYGAR 264 (414)
Q Consensus 201 ~ll----~~~p~Le~L~l~~~~~~~----~~--~~~~~~~L~~L~i~~~~---~~l---~~~~~~~p~L~~L~l~~~~~~ 264 (414)
.+. ..++.|++|+|.+|.... .+ .+..+++|+.|++++|. ... .......++|++|++++|...
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 443 357889999999886421 11 11346889999999886 111 111234678999999965442
Q ss_pred Cc----eEEeecCCCCccEEEeeecccchHHHHHH
Q 015025 265 RP----RVVEVARSPHLKKLDLVSVYFADNEFNHL 295 (414)
Q Consensus 265 ~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 295 (414)
+. +...+...++|+.|++++|.+++.....+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 21 11123456899999999999988766544
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=1.3e-06 Score=86.27 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred CcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc
Q 015025 183 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS 240 (414)
Q Consensus 183 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~ 240 (414)
.|+.|+|+++.++. ++. +.++++|+.|++++|... .+ .+.++++|+.|+++++.
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 57888888877742 233 667888888888877532 22 23356677777776664
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.04 E-value=1.1e-06 Score=74.02 Aligned_cols=43 Identities=30% Similarity=0.106 Sum_probs=21.7
Q ss_pred ccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEe
Q 015025 150 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~ 194 (414)
.++|..+.. +|++|+++++.+...+ .+..+++|++|+|+++.+
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC
Confidence 444543332 5666666666554332 134455555555555544
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=3.3e-06 Score=77.46 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=61.6
Q ss_pred CCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc----cccccccceEEeccCCCceeeec----cCCccc
Q 015025 274 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDV----DAPNLL 345 (414)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i----~~~~L~ 345 (414)
..+++.+.+.+. +.......+...+++|+.+++.++. +..+ ...+.+|+.+++.+ +++.+.- ++.+|+
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhcc
Confidence 345556666554 2233334444457788888887652 2222 22356777777654 2554442 355666
Q ss_pred -eEEeeecc--cc-eEeeecCCccEEEEEE-ee-ecchhHHHhHHHHhccCcceeEEE
Q 015025 346 -LFTYEFNP--IP-IISINVPCPWKVSFVC-KG-VLNTHWYLKLKKFLGVSKQIESLK 397 (414)
Q Consensus 346 -~l~~~~~~--~~-~~~~~~~~L~~l~i~~-~~-~~~~~~~~~l~~~l~~~~~L~~L~ 397 (414)
.+.+.+.- ++ ....++++|+.+.+.. .. ... ...+.++++|+++.
T Consensus 277 ~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLG-------DELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEEC-------TTTTCTTCCCCEEE
T ss_pred EEEEEcccceEEchhhhhCCccCCEEEeCCCccCccc-------hhhhcCCcchhhhc
Confidence 66665521 11 2334678888888742 11 111 24577888888764
No 138
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.91 E-value=2.4e-06 Score=82.09 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=36.3
Q ss_pred cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025 7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 45 (414)
Q Consensus 7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw 45 (414)
..|.|+.||+|++.+||+|||.++++++++|||+|+++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999753
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.88 E-value=4.6e-06 Score=68.99 Aligned_cols=35 Identities=29% Similarity=0.187 Sum_probs=16.2
Q ss_pred ccccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025 160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~ 194 (414)
++|++|+++++.+...+ ....+++|++|+++++.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence 35555555555543322 123444455555444443
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.88 E-value=6.7e-06 Score=69.07 Aligned_cols=124 Identities=16% Similarity=0.037 Sum_probs=85.1
Q ss_pred cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeecc
Q 015025 163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 240 (414)
Q Consensus 163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~ 240 (414)
+.++++++.+...+ ..-.++|++|+++++.++.......+.++++|++|++.++..... -.+.++++|+.|+++++.
T Consensus 11 ~~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67888887775543 222348999999999874222222356789999999998864322 234567899999999885
Q ss_pred ccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025 241 EEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 241 ~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (414)
+..+ ...+++|++|+++.+......+..+..+++|+.|+++++.+..
T Consensus 90 --l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 --IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp --CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred --CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 3322 2257899999999554433223346678999999999887653
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.83 E-value=6.3e-06 Score=69.31 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=14.8
Q ss_pred cccEEEEecccccCCc-cccCCCCcceEEceeEEe
Q 015025 161 SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 161 ~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~ 194 (414)
+|++|+++++.+...+ .+..+++|+.|+|+++.+
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence 4555555555443322 233344444444444433
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.82 E-value=1.2e-05 Score=66.50 Aligned_cols=126 Identities=18% Similarity=0.068 Sum_probs=79.1
Q ss_pred ccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeec
Q 015025 162 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSF 239 (414)
Q Consensus 162 L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~ 239 (414)
.+.++++++.+...+ ....++|++|+++++.++. .....+.++++|++|++.++...... .+..+++|+.|+++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456677666655443 2334788999998887732 12223467888999999887542211 1345788999998887
Q ss_pred c-cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025 240 S-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 240 ~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (414)
. ..+.. ....+++|++|+++.+....-....+..+++|+.|+++++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5 11111 11356889999988544322111124568899999999887754
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=66.15 Aligned_cols=101 Identities=16% Similarity=0.014 Sum_probs=66.6
Q ss_pred cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025 133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 210 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 210 (414)
+++++|+ +..+. ...+|..+..+++|++|++++|.+.... .+.++++|++|+|+++.++.-. ...+.++++|+
T Consensus 31 ~~l~~L~--L~~n~--i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELY--LDGNQ--FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEE--CCSSC--CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCC
T ss_pred CCCCEEE--CCCCc--CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCC
Confidence 4788888 65433 3467777778999999999999877544 4678889999999888773211 11245677778
Q ss_pred EEEeeccCCCceee---ccCCCCCcEEEeeec
Q 015025 211 DLCFSNCWGLKHLC---VSKASKLKIMEIRSF 239 (414)
Q Consensus 211 ~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~ 239 (414)
.|+|.+|... .+. +..+++|+.|++.++
T Consensus 106 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 8877776532 211 223455555555544
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.73 E-value=6.2e-06 Score=83.98 Aligned_cols=108 Identities=11% Similarity=-0.003 Sum_probs=56.2
Q ss_pred ccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc-ccceeeeecCCCee
Q 015025 178 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQ 254 (414)
Q Consensus 178 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~ 254 (414)
...+++|+.|+|+++.+. .+..-+.+++.|+.|+|.+|... .+ .+.++++|+.|++++|. ..+......+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 344555555555555542 11111234566666666555432 21 12345666666666554 11111122456677
Q ss_pred EEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025 255 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 289 (414)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (414)
+|.++.+.. ..++..++.+++|+.|+|++|.++.
T Consensus 297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEECCCCCC-CccChhhhcCCCccEEeCCCCccCC
Confidence 777764433 2344456778888888888887764
No 145
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.70 E-value=1.6e-05 Score=75.98 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=35.5
Q ss_pred cccccCCCChHHHHHHhcCCChhhHHhhhccccchhh
Q 015025 7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ 43 (414)
Q Consensus 7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~ 43 (414)
..|.++.||+|++.+||+||+.+++++++.|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 5799999999999999999999999999999999986
No 146
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.67 E-value=8.1e-06 Score=77.81 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=35.2
Q ss_pred cccccCCCChH----HHHHHhcCCChhhHHhhhccccchhh
Q 015025 7 AMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ 43 (414)
Q Consensus 7 ~~d~i~~LPde----vL~~I~s~L~~~~~~~~~~vskrWr~ 43 (414)
..|.|+.||+| ++.+||+||+.++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999999999999999994
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.65 E-value=8.1e-06 Score=83.10 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=77.8
Q ss_pred HHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCC
Q 015025 200 QKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH 276 (414)
Q Consensus 200 ~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~ 276 (414)
...+..++.|+.|+|.+|... .+ .+.++++|+.|++++|. ..+......+++|++|+++.+... .++..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 444677899999999988753 22 23357899999999886 222221236899999999965543 55666788999
Q ss_pred ccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025 277 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 313 (414)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 313 (414)
|+.|+|+++.++. +...+..+++|+.|+|++|...
T Consensus 295 L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccC
Confidence 9999999988753 2223677899999999998543
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=5.1e-05 Score=69.45 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=41.3
Q ss_pred CCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceE-EeecCCCCcc-EEEeeecccchHHHHHHhhcCCC
Q 015025 228 ASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRV-VEVARSPHLK-KLDLVSVYFADNEFNHLISKFPS 301 (414)
Q Consensus 228 ~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~ 301 (414)
|++|+.+++..+. +..+. ..+++|+++.+..+ ...+. ..+.+|++|+ .+.+.. .++.- -...+.+|++
T Consensus 225 ~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTT
T ss_pred cCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCcc
Confidence 5677777776552 22322 25667777776621 11111 1245677777 777765 22211 1123566778
Q ss_pred CcEEEecCc
Q 015025 302 LEDLFVTRC 310 (414)
Q Consensus 302 L~~L~l~~c 310 (414)
|+.+.+..+
T Consensus 299 L~~l~l~~n 307 (329)
T 3sb4_A 299 LRYVLATGD 307 (329)
T ss_dssp EEEEEECSS
T ss_pred CCEEEeCCC
Confidence 888887543
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.63 E-value=9.7e-05 Score=69.53 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred CCccccccccccEEEEecccccCC-ccccCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeecc-CCCceeecc
Q 015025 152 LPQAIFSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVS 226 (414)
Q Consensus 152 l~~~l~~~~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~-~~~~~~~~~ 226 (414)
++...|.-.+|+.+.+.+..-... ..+.+|++|+.+++..+.+ ....+ .|..|+++.+... ..+..-.+.
T Consensus 149 I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~aF~ 223 (401)
T 4fdw_A 149 IGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQAFL 223 (401)
T ss_dssp ECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTTTTT
T ss_pred ECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhhHhh
Confidence 333333323466666554211111 1355666777777765433 22222 2566777766532 112222334
Q ss_pred CCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCce-EEeecCCCCccEEEeeecccch----HHHHHHhhcCCC
Q 015025 227 KASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFAD----NEFNHLISKFPS 301 (414)
Q Consensus 227 ~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~ 301 (414)
+|++|+.+.+......+..-.....+|+.+.+. .....+ ...+..|++|+.+.+.++.... ......+..|++
T Consensus 224 ~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 224 KTSQLKTIEIPENVSTIGQEAFRESGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCCCCEEecCCCccCccccccccCCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 567777777764321111111222567777775 211111 1124578888888887654320 011234567888
Q ss_pred CcEEEecCcccccccc----ccccccceEEeccCCCceeee----ccCCccceEEeeecc
Q 015025 302 LEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP 353 (414)
Q Consensus 302 L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~ 353 (414)
|+.+.+... +..+. ..+.+|+.+.+.. +++.+. -++ +|+.+.+.++.
T Consensus 302 L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 302 LARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred CCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 888888742 33332 2346677776632 344443 235 67777777665
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=4.1e-05 Score=63.75 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=26.4
Q ss_pred cCCCCccEEEe--eecccchHH---HHHHhhcCCCCcEEEecCc
Q 015025 272 ARSPHLKKLDL--VSVYFADNE---FNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 272 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 310 (414)
...++|++|++ .++.+.+.. +...+...++|++|++++|
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 44567778888 667776654 4445556677888888776
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.51 E-value=7.5e-05 Score=61.22 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=49.9
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC 224 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~ 224 (414)
...+|..+. ++|++|++++|.+.... .+..+++|++|+|+++.++. .....+.++++|+.|+|+++..... -.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 345555443 67788888887765542 35667777777777776631 1112234566777777766643211 11
Q ss_pred ccCCCCCcEEEeeecc
Q 015025 225 VSKASKLKIMEIRSFS 240 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~~ 240 (414)
+..+++|+.|+++++.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 2244556666555543
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.46 E-value=9.5e-05 Score=60.85 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=48.3
Q ss_pred cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025 149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC 224 (414)
Q Consensus 149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~ 224 (414)
...+|..+. ++|++|++++|.+.... .+..+++|+.|+|+++.++. .....+.++++|+.|+|.+|..... -.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHH
Confidence 345565443 67788888887765542 35567777777777776631 1111234566666766666542111 01
Q ss_pred ccCCCCCcEEEeeec
Q 015025 225 VSKASKLKIMEIRSF 239 (414)
Q Consensus 225 ~~~~~~L~~L~i~~~ 239 (414)
+..+++|+.|++.++
T Consensus 101 ~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCSEEECCSS
T ss_pred hccccCCCEEEeCCC
Confidence 223455555555544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.10 E-value=0.00013 Score=60.67 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=19.0
Q ss_pred CCCcceEEceeEEechHHH---HHHHhcCCcccEEEeeccC
Q 015025 181 LCSLKKLTLERVCLDEQMV---QKLASECPLLEDLCFSNCW 218 (414)
Q Consensus 181 l~~L~~L~L~~~~~~~~~l---~~ll~~~p~Le~L~l~~~~ 218 (414)
.++|++|+|+++.++++.. ...+...+.|++|+|.+|.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455555555555543332 2223445556666665554
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.94 E-value=0.00041 Score=65.11 Aligned_cols=153 Identities=14% Similarity=0.023 Sum_probs=73.4
Q ss_pred CCCCcEEEeeecccccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025 228 ASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 306 (414)
Q Consensus 228 ~~~L~~L~i~~~~~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 306 (414)
+.+|+.+.+......+.. ....+.+|+.+.+... ...-....+..++.++.+......+.+. .+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEE
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeeccc----cccccccccccc
Confidence 355666655432211111 1124556666666521 1000111234556666666554433322 245567777777
Q ss_pred ecCcccccccc----ccccccceEEeccCCCceeee----ccCCccceEEeeecc--cc-eEeeecCCccEEEEEEeeec
Q 015025 307 VTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP--IP-IISINVPCPWKVSFVCKGVL 375 (414)
Q Consensus 307 l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~--~~-~~~~~~~~L~~l~i~~~~~~ 375 (414)
+... +..++ ..+.+|+.+.+. .+++.+. -+|.+|+++.+...- +. ....++++|+++.+.. +
T Consensus 304 l~~~--i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~--~- 376 (394)
T 4fs7_A 304 LLDS--VKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK--R- 376 (394)
T ss_dssp ECTT--CCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG--G-
T ss_pred cccc--cceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC--C-
Confidence 7542 22222 224556666553 2233332 124555555553321 11 2234678999988731 2
Q ss_pred chhHHHhHHHHhccCcceeEE
Q 015025 376 NTHWYLKLKKFLGVSKQIESL 396 (414)
Q Consensus 376 ~~~~~~~l~~~l~~~~~L~~L 396 (414)
++.+.+.+.+|++|+..
T Consensus 377 ----~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 ----LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----GGGGGGGBCTTCEEEEE
T ss_pred ----CEEhhheecCCCCCcEE
Confidence 23344568888988865
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.82 E-value=0.00051 Score=56.12 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=19.6
Q ss_pred cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
..+++|+.|+++++.++.-. ...+..+++|+.|+|.+|
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 44556666666655554311 122345566666666655
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.66 E-value=0.0012 Score=61.91 Aligned_cols=180 Identities=11% Similarity=0.105 Sum_probs=106.4
Q ss_pred CceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCc-cccCCCCcceEEceeE--EechHHHHHHHhcCCcc
Q 015025 134 GVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLL 209 (414)
Q Consensus 134 ~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~~p~L 209 (414)
+++++. +. .....++...+ .|++|+.+.+.++.+...+ ..-.+.+|+.+.+... .+.... ..+|++|
T Consensus 158 ~L~~i~--lp---~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L 228 (401)
T 4fdw_A 158 TVQEIV--FP---STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQL 228 (401)
T ss_dssp CCCEEE--CC---TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTC
T ss_pred CceEEE--eC---CCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCC
Confidence 566665 32 13344554444 4999999999987654432 2223688999998643 123222 4579999
Q ss_pred cEEEeeccC-CCceeeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCC-C----ceEEeecCCCCccE
Q 015025 210 EDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGAR-R----PRVVEVARSPHLKK 279 (414)
Q Consensus 210 e~L~l~~~~-~~~~~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~-~----~~~~~~~~~~~L~~ 279 (414)
+++.+...- .+..-.+.+ .+|+.+.+... +..+ ...|++|+.+.+..+... . -....+.+|++|+.
T Consensus 229 ~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 229 KTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 999997531 122223334 68999988533 3333 237899999999732211 0 01113567899999
Q ss_pred EEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc----ccccccceEEeccC
Q 015025 280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSC 331 (414)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c 331 (414)
+.+... +.. .-...+.+|++|+.+.|..+ +..+. ..+ +|+.+.+.+.
T Consensus 305 l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 305 FEIPES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECCCTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred EEeCCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 999742 221 11234577899999999653 33222 223 5666665443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.65 E-value=0.001 Score=61.14 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=60.5
Q ss_pred ccccCCccccccccccEEEEec-ccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee
Q 015025 148 TVYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC 224 (414)
Q Consensus 148 ~~~~l~~~l~~~~~L~~L~l~~-~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~ 224 (414)
.-..+|. +..+++|++|+|++ |.+...+ .+..+++|+.|+|+++.++. .....+.++++|+.|+|++|.. ..+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence 3456787 77788899999986 7765443 46788899999998887732 1222356788999999988764 2222
Q ss_pred ---ccCCCCCcEEEeeecc
Q 015025 225 ---VSKASKLKIMEIRSFS 240 (414)
Q Consensus 225 ---~~~~~~L~~L~i~~~~ 240 (414)
+.. ..|+.|++.++.
T Consensus 97 ~~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp STTTCS-CCCCEEECCSSC
T ss_pred HHHccc-CCceEEEeeCCC
Confidence 122 238888887664
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.62 E-value=0.00094 Score=54.77 Aligned_cols=82 Identities=15% Similarity=0.027 Sum_probs=60.1
Q ss_pred cCceeeEEEeeeCCCccccC-CccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025 133 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 209 (414)
Q Consensus 133 ~~l~~L~~~l~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 209 (414)
.++++|+ +..+. ...+ |..+..+++|++|+|++|.+...+ .+..+++|++|+|+++.++. .....+..+++|
T Consensus 33 ~~L~~L~--Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLW--LNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEE--CCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEE--eCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 5788888 65432 2334 455667899999999999887654 34689999999999998842 112335678999
Q ss_pred cEEEeeccCC
Q 015025 210 EDLCFSNCWG 219 (414)
Q Consensus 210 e~L~l~~~~~ 219 (414)
+.|.+.+++.
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999998863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.54 E-value=0.0023 Score=56.21 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=31.8
Q ss_pred cCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025 249 SVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 313 (414)
Q Consensus 249 ~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 313 (414)
.+|+|++|.++.+.... .++..+..+++|+.|+|++|.+.+..-...+..+ +|++|.|.+|+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 35555555555332211 1112223567777777776666543211222223 6777777776543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.52 E-value=0.012 Score=51.63 Aligned_cols=15 Identities=33% Similarity=0.153 Sum_probs=7.2
Q ss_pred CCCCcceEEceeEEe
Q 015025 180 MLCSLKKLTLERVCL 194 (414)
Q Consensus 180 ~l~~L~~L~L~~~~~ 194 (414)
.+++|+.|+|+++.+
T Consensus 194 ~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 194 KAPNLKILNLSGNEL 208 (267)
T ss_dssp HSTTCCEEECTTSCC
T ss_pred hCCCCCEEECCCCcc
Confidence 344444444444444
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.43 E-value=0.017 Score=53.90 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=13.6
Q ss_pred cccCCcccc-ccccccEEEEecc
Q 015025 149 VYTLPQAIF-SANSVTNLRLVWC 170 (414)
Q Consensus 149 ~~~l~~~l~-~~~~L~~L~l~~~ 170 (414)
...+....| .|.+|+.+.+..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGG
T ss_pred eeEEhHHHhhCCccCceEeecCC
Confidence 344544444 3788888887654
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.95 E-value=0.014 Score=53.33 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=38.5
Q ss_pred EEEecc-cccCCccccCCCCcceEEcee-EEechHHHHHHHhcCCcccEEEeeccCCCcee---eccCCCCCcEEEeeec
Q 015025 165 LRLVWC-RLEQPFDSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF 239 (414)
Q Consensus 165 L~l~~~-~l~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~ 239 (414)
++.++. .+...+....+++|+.|+|++ +.++. .....+.++++|+.|+|++|.. ..+ .+.++++|+.|+++++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 444333345566677777774 55521 1112244567777777766642 222 1234566666666655
Q ss_pred c
Q 015025 240 S 240 (414)
Q Consensus 240 ~ 240 (414)
.
T Consensus 91 ~ 91 (347)
T 2ifg_A 91 A 91 (347)
T ss_dssp C
T ss_pred c
Confidence 3
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.74 E-value=0.011 Score=55.18 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=61.2
Q ss_pred cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCceeee----ccCCccceE
Q 015025 272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID----VDAPNLLLF 347 (414)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l 347 (414)
..+..|+.+.+..+...-. ...+..++.++.+..............+.+|+.+.+.. +++.+. -++.+|+++
T Consensus 250 ~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEE
T ss_pred cccccceeEEcCCCcceee--ccccccccccceeccCceeecccccccccccccccccc--ccceechhhhcCCCCCCEE
Confidence 4566777777754322110 12245567777776654322222233455677666532 233332 125566666
Q ss_pred Eeeecc--cc-eEeeecCCccEEEEEEe-eecchhHHHhHHHHhccCcceeEEEEE
Q 015025 348 TYEFNP--IP-IISINVPCPWKVSFVCK-GVLNTHWYLKLKKFLGVSKQIESLKLS 399 (414)
Q Consensus 348 ~~~~~~--~~-~~~~~~~~L~~l~i~~~-~~~~~~~~~~l~~~l~~~~~L~~L~i~ 399 (414)
.+...- +. ....++++|+.+.+... .... ...+.+|++|+++++.
T Consensus 326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~-------~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIG-------ANAFQGCINLKKVELP 374 (394)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEECCCTTCCEEC-------TTTBTTCTTCCEEEEE
T ss_pred EeCCcccEEhHHhccCCCCCCEEEECccccEeh-------HHHhhCCCCCCEEEEC
Confidence 553221 11 22336788998887411 1111 2457899999988774
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.13 E-value=0.13 Score=47.82 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=16.3
Q ss_pred cCCCCccEEEeeec--ccchHHHHHHhhcCCCCcEEEec
Q 015025 272 ARSPHLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVT 308 (414)
Q Consensus 272 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~ 308 (414)
.+|.+|+++.|... .+.+ ..+.+|.+|+.+.+-
T Consensus 308 ~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 308 AGCISLKSIDIPEGITQILD----DAFAGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEEC
T ss_pred cCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEEC
Confidence 45566666666422 1111 124456666666664
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.82 E-value=0.53 Score=38.90 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCcccEEEeecc
Q 015025 197 QMVQKLASECPLLEDLCFSNC 217 (414)
Q Consensus 197 ~~l~~ll~~~p~Le~L~l~~~ 217 (414)
+.+..++.+-+.|++|+|.++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM 51 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC
T ss_pred HHHHHHHhcCCCccEEECCCC
Confidence 344555555555555555443
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.38 E-value=0.25 Score=40.88 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHHHHHHHHHh--cCceeeEEEeeeC-CC---ccccCCccccccccccEEEEecccccCCc------cccCCCCcceEEc
Q 015025 122 IVDRWIRLAVE--NGVRELDFENITD-EN---TVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTL 189 (414)
Q Consensus 122 ~~~~w~~~~~~--~~l~~L~~~l~~~-~~---~~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L 189 (414)
.++.++..+.. ..+++|+ +... .. ....+-..+..-++|+.|+|++|.+.... ....=..|++|+|
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~--L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVN--INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEE--CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHhcCCCccEEE--CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 45666666555 5677777 5421 11 11233344444567888888887765432 1112356777777
Q ss_pred eeEEechHHHHHHHh---cCCcccEEEeecc
Q 015025 190 ERVCLDEQMVQKLAS---ECPLLEDLCFSNC 217 (414)
Q Consensus 190 ~~~~~~~~~l~~ll~---~~p~Le~L~l~~~ 217 (414)
+++.++++....+.. .-+.|++|.|.++
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 777776666555443 3345666666543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=77.83 E-value=1.7 Score=33.12 Aligned_cols=42 Identities=24% Similarity=0.048 Sum_probs=31.6
Q ss_pred cCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025 151 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 194 (414)
Q Consensus 151 ~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~ 194 (414)
.+|..+. ++|+.|+|++|.+...+ .+..+++|++|+|.++.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5665432 46899999999876654 456788899999988877
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.33 E-value=0.7 Score=42.45 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=63.6
Q ss_pred hcCCcccEEEeeccCC-CceeeccCCCCCcEEEeeecccccee-eeecCCCeeEEEEEeeCCCCceE-EeecCCCCccEE
Q 015025 204 SECPLLEDLCFSNCWG-LKHLCVSKASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKL 280 (414)
Q Consensus 204 ~~~p~Le~L~l~~~~~-~~~~~~~~~~~L~~L~i~~~~~~l~~-~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 280 (414)
..|..|+.+.+...-. +..-...++..|+.+.+......+.. ....+.+|+.+.+.. ....+. ..+..|++|+.+
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccccccccccc
Confidence 4577788877744311 22223345678888877543211111 112567788877762 111111 124578889988
Q ss_pred EeeecccchHHHHHHhhcCCCCcEEEecCcccccccc----ccccccceEEe
Q 015025 281 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLF 328 (414)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l 328 (414)
.+..+.++.-. ...+.+|.+|+.+.|... ++.++ ..+.+|+.+.+
T Consensus 292 ~l~~~~i~~I~-~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 292 VMDNSAIETLE-PRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTTCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccceeh-hhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 88765432110 123567888998888542 33332 23455666554
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.36 E-value=2.8 Score=38.30 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=68.9
Q ss_pred cCCcccEEEeeccCC-CceeeccCCCCCcEEEeeecccccee-eeecCCCeeEEEEEeeCCCCce-EEeecCCCCccEEE
Q 015025 205 ECPLLEDLCFSNCWG-LKHLCVSKASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLD 281 (414)
Q Consensus 205 ~~p~Le~L~l~~~~~-~~~~~~~~~~~L~~L~i~~~~~~l~~-~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 281 (414)
.+..+.++.+..... ........+.+|+.+.+......... ....+.+|+.+.+.. ....+ ...+..+.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccc
Confidence 344555555433221 11122234577887776533211111 113567888888762 11111 11245688899998
Q ss_pred eeecccchHHHHHHhhcCCCCcEEEecCccccccc----cccccccceEEeccCCCceeee----ccCCccceEEe
Q 015025 282 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTY 349 (414)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~ 349 (414)
+... +.. .....+..|++|+.+.+..+ .++.+ ...+.+|+.+.+.. +++.+. -+|.+|+++.+
T Consensus 270 l~~~-i~~-i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 270 FYAK-VKT-VPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCC-CSE-ECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccc-cee-cccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 8543 111 11234567899999999754 12222 23456777776642 243333 12455555544
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=48.54 E-value=6.1 Score=29.90 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=19.0
Q ss_pred CccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025 276 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 310 (414)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 310 (414)
+|+.|+|++|.++.-. ...+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCC
Confidence 5666666666554311 123455666777777665
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.83 E-value=65 Score=22.81 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=18.5
Q ss_pred cCCccccc-cccccEEEEecccccCC-ccccCCCCcceEEce
Q 015025 151 TLPQAIFS-ANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLE 190 (414)
Q Consensus 151 ~l~~~l~~-~~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~L~ 190 (414)
.+....|. |.+|+++.|-...-... ..+.+|.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEc
Confidence 33334443 77777777655321111 133444445544443
Done!