Query 015028
Match_columns 414
No_of_seqs 139 out of 978
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 9.3E-92 2E-96 730.6 33.4 361 24-385 23-389 (996)
2 PLN02701 alpha-mannosidase 100.0 1.9E-83 4.1E-88 711.8 37.0 352 23-384 26-414 (1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 2.9E-75 6.3E-80 609.0 26.9 352 24-384 149-527 (1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 4.5E-68 9.7E-73 588.2 33.5 325 37-409 3-349 (875)
5 PF01074 Glyco_hydro_38: Glyco 100.0 6.4E-65 1.4E-69 494.7 27.4 272 39-350 1-275 (275)
6 KOG4342 Alpha-mannosidase [Car 100.0 1.4E-55 3.1E-60 446.7 23.6 308 36-395 279-604 (1078)
7 COG0383 AMS1 Alpha-mannosidase 100.0 1.6E-33 3.5E-38 310.8 4.9 286 40-396 200-499 (943)
8 COG0383 AMS1 Alpha-mannosidase 99.8 7.2E-23 1.6E-27 226.7 -4.3 319 37-395 3-357 (943)
9 PF03065 Glyco_hydro_57: Glyco 99.0 4E-09 8.6E-14 106.8 13.5 145 42-197 2-198 (360)
10 smart00872 Alpha-mann_mid Alph 98.6 2.7E-08 5.8E-13 79.0 2.6 53 356-408 1-71 (79)
11 PF09261 Alpha-mann_mid: Alpha 98.6 2.7E-08 5.7E-13 79.2 2.3 41 356-396 2-51 (80)
12 COG1543 Uncharacterized conser 97.4 0.00082 1.8E-08 69.0 9.2 93 99-193 114-207 (504)
13 PF01522 Polysacc_deac_1: Poly 96.4 0.033 7.1E-07 46.7 9.9 103 74-189 18-122 (123)
14 TIGR03212 uraD_N-term-dom puta 96.4 0.69 1.5E-05 45.8 20.4 109 74-196 77-187 (297)
15 TIGR02764 spore_ybaN_pdaB poly 94.9 0.6 1.3E-05 42.7 12.7 101 77-190 22-124 (191)
16 TIGR03006 pepcterm_polyde poly 94.8 0.32 6.8E-06 47.5 11.3 112 71-194 25-140 (265)
17 TIGR02884 spore_pdaA delta-lac 94.8 0.46 1E-05 44.9 12.1 102 77-190 53-156 (224)
18 COG1449 Alpha-amylase/alpha-ma 93.7 2.8 6E-05 45.8 16.7 99 89-189 160-262 (615)
19 TIGR02873 spore_ylxY probable 93.5 1.3 2.8E-05 43.2 12.6 101 76-189 100-202 (268)
20 PRK14582 pgaB outer membrane N 92.7 1.6 3.5E-05 47.9 13.0 82 112-196 168-277 (671)
21 PRK14581 hmsF outer membrane N 89.1 2 4.3E-05 47.2 9.4 115 73-196 118-277 (672)
22 PF08672 APC2: Anaphase promot 79.4 2.3 5E-05 31.9 3.1 23 108-130 36-58 (60)
23 PRK15394 4-deoxy-4-formamido-L 74.8 93 0.002 30.9 17.5 80 112-195 92-175 (296)
24 TIGR03826 YvyF flagellar opero 73.2 4.3 9.3E-05 35.6 3.7 52 71-129 27-78 (137)
25 COG0726 CDA1 Predicted xylanas 56.5 1.2E+02 0.0026 28.0 10.5 115 50-188 65-181 (267)
26 PF07825 Exc: Excisionase-like 49.0 34 0.00074 27.0 4.4 41 99-139 5-52 (77)
27 PF06044 DRP: Dam-replacing fa 49.0 27 0.00058 33.6 4.5 99 24-129 138-249 (254)
28 PF01479 S4: S4 domain; Inter 48.8 26 0.00057 24.2 3.5 38 99-137 3-42 (48)
29 cd06811 PLPDE_III_yhfX_like Ty 47.1 63 0.0014 33.1 7.3 83 103-198 6-89 (382)
30 PF12395 DUF3658: Protein of u 42.9 46 0.00099 27.9 4.6 22 112-133 86-107 (111)
31 TIGR02988 YaaA_near_RecF S4 do 42.8 36 0.00078 24.8 3.5 44 97-141 9-54 (59)
32 PRK10148 hypothetical protein; 38.3 12 0.00026 33.0 0.4 16 163-178 124-139 (147)
33 PRK12866 YciI-like protein; Re 37.5 39 0.00085 27.6 3.3 36 96-133 11-46 (97)
34 PF00538 Linker_histone: linke 35.6 1.1E+02 0.0023 23.6 5.4 32 96-127 24-65 (77)
35 COG1540 Uncharacterized protei 34.3 23 0.00051 33.8 1.6 34 108-141 191-226 (252)
36 PRK07328 histidinol-phosphatas 32.0 2.9E+02 0.0064 26.5 9.0 142 41-194 108-259 (269)
37 PF07023 DUF1315: Protein of u 31.2 44 0.00095 27.3 2.5 23 101-123 3-25 (93)
38 PHA03393 odv-e66 occlusion-der 30.5 1.3E+02 0.0028 33.3 6.7 111 51-181 54-174 (682)
39 PRK12865 YciI-like protein; Re 30.3 58 0.0013 26.4 3.2 36 97-134 12-47 (97)
40 smart00526 H15 Domain in histo 30.2 1.5E+02 0.0032 22.0 5.2 50 74-128 9-66 (66)
41 PRK12270 kgd alpha-ketoglutara 29.9 1.2E+02 0.0027 35.1 6.5 68 262-335 989-1060(1228)
42 PRK12864 YciI-like protein; Re 28.8 63 0.0014 25.9 3.1 35 97-133 13-47 (89)
43 smart00363 S4 S4 RNA-binding d 25.6 96 0.0021 21.2 3.4 31 109-140 14-45 (60)
44 PF08679 DsrD: Dissimilatory s 23.7 1.6E+02 0.0035 22.6 4.2 47 78-127 5-54 (67)
45 COG3747 Phage terminase, small 22.4 3E+02 0.0065 24.6 6.2 123 13-163 8-133 (160)
46 PF03755 YicC_N: YicC-like fam 22.0 2.7E+02 0.0059 24.7 6.2 57 104-161 42-101 (159)
47 PF03795 YCII: YCII-related do 21.4 1.1E+02 0.0024 24.1 3.3 30 104-134 18-47 (95)
48 COG2350 Uncharacterized protei 21.1 90 0.0019 25.4 2.6 39 97-137 12-50 (92)
49 PF08359 TetR_C_4: YsiA-like p 21.0 42 0.0009 28.3 0.7 78 67-152 21-103 (133)
50 PRK12569 hypothetical protein; 20.9 64 0.0014 31.2 2.0 33 109-141 193-227 (245)
51 PRK05097 Ter macrodomain organ 20.3 3E+02 0.0066 24.2 5.7 59 99-160 54-113 (150)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-92 Score=730.57 Aligned_cols=361 Identities=62% Similarity=1.061 Sum_probs=352.3
Q ss_pred eeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHH
Q 015028 24 YIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWW 103 (414)
Q Consensus 24 ~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~ 103 (414)
-.+||+|+...+.+++||+|||||.|+||++|+++||.|+++.|++.+|++|+++|++.|.+||++||+.+|++||.+||
T Consensus 23 ~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW 102 (996)
T KOG1959|consen 23 RAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWW 102 (996)
T ss_pred hhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhC--CCCceeeecCCCCCchhHHHHH
Q 015028 104 RQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFG--KLPRVGWQIDPFGHSAVQAYLL 181 (414)
Q Consensus 104 ~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG--~~~~~~w~pD~FGhs~~lPqil 181 (414)
.++++++++.||+||++|||||+||+|+|+|||.+++.++|+|++.|++||.++|| .+|++|||+||||||+.+|.||
T Consensus 103 ~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslf 182 (996)
T KOG1959|consen 103 NEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLF 182 (996)
T ss_pred HhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HhhcCCcEEEEeecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCccCCcccccch
Q 015028 182 GAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYN 261 (414)
Q Consensus 182 ~~~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n 261 (414)
++||+++.+|.|+++++|..|...+.+||+|+|++++++.++|||++|+++|++|.+|+|+..+.+.|++|++.+.++|
T Consensus 183 -AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~N 261 (996)
T KOG1959|consen 183 -AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYN 261 (996)
T ss_pred -HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999889999999889999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcC---C-CceEEEcChHHHHHHHHhcCC
Q 015028 262 VEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKD---G-RVNALYSTPSIYTDAKNAANE 337 (414)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~---~-~~~i~~sT~~~yf~~l~~~~~ 337 (414)
++++++.|++.++.++..++|||||+|+|+||.|.+|..||.||++||+++|++ + .+++.||||+.|++++++.+.
T Consensus 262 VkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~ 341 (996)
T KOG1959|consen 262 VKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQ 341 (996)
T ss_pred HHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999964 3 699999999999999999999
Q ss_pred CCCcccccCCCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhcc
Q 015028 338 EWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVI 385 (414)
Q Consensus 338 ~lp~~~Ge~~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l~ 385 (414)
.||+.+.|||||++++|.||||||||||.+|++.|.+...|.+|+.|.
T Consensus 342 Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~ 389 (996)
T KOG1959|consen 342 TWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLS 389 (996)
T ss_pred cccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999874
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.9e-83 Score=711.83 Aligned_cols=352 Identities=34% Similarity=0.663 Sum_probs=316.2
Q ss_pred eeeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHH
Q 015028 23 EYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRW 102 (414)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w 102 (414)
-.|.|+.. ++++++++||||||||||+|||||+++|+. ..++.++++||+.|++||++||+|+|++||++|
T Consensus 26 ~~~~y~~~-~~~~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~W 96 (1050)
T PLN02701 26 WRVKYRGD-EWDREKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERW 96 (1050)
T ss_pred cceeeccc-ccCCcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHH
Confidence 35667654 566889999999999999999999999987 689999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHH
Q 015028 103 WRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLG 182 (414)
Q Consensus 103 ~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~ 182 (414)
|++++|+++++||+||++||||||||+|||+||+++++|++|||+++||+|++++||+.|++||+|||||||++|||||
T Consensus 97 w~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll- 175 (1050)
T PLN02701 97 WRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLL- 175 (1050)
T ss_pred HHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEeecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCC-CCC------CCCCCC--cccCC------C
Q 015028 183 AELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPR-HYD------PPDGFT--FEIND------V 247 (414)
Q Consensus 183 ~~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~-~Y~------~~~~~~--~~~~~------~ 247 (414)
++|||++++|+|++++++..+...+.+||+|++.++...||+||||+||. +|+ ++++|+ ||..+ .
T Consensus 176 ~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~ 255 (1050)
T PLN02701 176 RRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYE 255 (1050)
T ss_pred HhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccccc
Confidence 99999999999999999988888899999999744333499999999994 554 334444 44332 1
Q ss_pred CCCccCC-cccccchHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCC---CchhHHHHHHHHHHHHhcCC--CceEE
Q 015028 248 SPPIQDD-VLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQ---YANSWFRQMDKFIHYVNKDG--RVNAL 321 (414)
Q Consensus 248 ~~~~~d~-~~~~~~n~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~---~a~~~~~~l~~li~~~N~~~--~~~i~ 321 (414)
.++|.++ ..++++|+++++++|++++++++..++++++|+|+|+||.+. .+..+|.|++++++++|+++ .++++
T Consensus 256 ~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~ 335 (1050)
T PLN02701 256 LCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVK 335 (1050)
T ss_pred cCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEE
Confidence 2455443 456778999999999999998888899999999999999995 57788999999999999875 48999
Q ss_pred EcChHHHHHHHHhcC----------------CCCCcccccCCCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhc
Q 015028 322 YSTPSIYTDAKNAAN----------------EEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVV 384 (414)
Q Consensus 322 ~sT~~~yf~~l~~~~----------------~~lp~~~Ge~~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l 384 (414)
|||+++||+++++.. ..+|+++||||||+++.+.||||||||||.+|+++|.+|++|++||.|
T Consensus 336 ~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L 414 (1050)
T PLN02701 336 FGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEIL 414 (1050)
T ss_pred ECCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998753 479999999999999999999999999999999999999999999985
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-75 Score=608.99 Aligned_cols=352 Identities=36% Similarity=0.669 Sum_probs=321.7
Q ss_pred eeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHH
Q 015028 24 YIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWW 103 (414)
Q Consensus 24 ~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~ 103 (414)
.|-|+..--....+++|.||||||.|+||..||++|++ ...++||+.++.-|.++|++||+|+|++||++||
T Consensus 149 ~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww 220 (1129)
T KOG1958|consen 149 KITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLERWW 220 (1129)
T ss_pred eeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhh
Confidence 45565543333334999999999999999999999998 7889999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHh
Q 015028 104 RQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGA 183 (414)
Q Consensus 104 ~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~ 183 (414)
...+|+.++.||+||++||||||+||||||||+.+++-++|.|+..||+|+..++|+.|+++|.+||||||+.||+|| +
T Consensus 221 ~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL-~ 299 (1129)
T KOG1958|consen 221 DDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLL-R 299 (1129)
T ss_pred hhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHH-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hcCCcEEEEeecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCC-CCCCCC----------CCCcccC---CCCC
Q 015028 184 ELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPR-HYDPPD----------GFTFEIN---DVSP 249 (414)
Q Consensus 184 ~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~-~Y~~~~----------~~~~~~~---~~~~ 249 (414)
.+|+++.+++|+|+..|..+...+.+||+||...+..+.+.||||+||. +|+.|. .|+|+.. +.+|
T Consensus 300 ~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~C 379 (1129)
T KOG1958|consen 300 RAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCEC 379 (1129)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCC
Confidence 9999999999999999999999999999999998777788999999998 787653 4555543 2357
Q ss_pred Cc-cCCcccccchHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhH---HHHHHHHHHHHhcCC--CceEEEc
Q 015028 250 PI-QDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSW---FRQMDKFIHYVNKDG--RVNALYS 323 (414)
Q Consensus 250 ~~-~d~~~~~~~n~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~---~~~l~~li~~~N~~~--~~~i~~s 323 (414)
|| ..+..+++.||+.|++.+++|+++.++.|++|.+|+|.|+||+|....+| |.|+.+|++.+|+.+ .++++|+
T Consensus 380 pw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFG 459 (1129)
T KOG1958|consen 380 PWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFG 459 (1129)
T ss_pred CCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeecC
Confidence 78 45677899999999999999999999999999999999999999887665 999999999999986 6889999
Q ss_pred ChHHHHHHHHhc------C-CCCCcccccCCCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhc
Q 015028 324 TPSIYTDAKNAA------N-EEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVV 384 (414)
Q Consensus 324 T~~~yf~~l~~~------~-~~lp~~~Ge~~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l 384 (414)
|++|||++|++. + ..+|+++||||+|+++..+||||||||||..|++-|.+|..||+||.+
T Consensus 460 TlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl 527 (1129)
T KOG1958|consen 460 TLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEIL 527 (1129)
T ss_pred CHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHH
Confidence 999999999875 1 347999999999999999999999999999999999999999999986
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=4.5e-68 Score=588.21 Aligned_cols=325 Identities=17% Similarity=0.242 Sum_probs=276.0
Q ss_pred ceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEee--chHHHHHHHHhcChHHHHHH
Q 015028 37 KINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYV--EMAFFQRWWRQQSKAMKVKV 114 (414)
Q Consensus 37 ~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~--e~~~l~~w~~e~~pe~~~~v 114 (414)
+++||+|||||||++||||++++++ ++.+++++||++|+++|+|+|++. +++++++|| +.+|+++++|
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~-~~~Pe~~~~i 72 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYL-AVKPEDKERV 72 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHH-HhChHHHHHH
Confidence 4789999999999999999999987 899999999999999999999764 577787775 7899999999
Q ss_pred HHHHHCCCeEEeccee-eecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEe
Q 015028 115 KGLVDSGQLEFINGGM-CMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFA 193 (414)
Q Consensus 115 k~lV~~GRlE~vgG~W-vq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~ 193 (414)
|+||++||| ++ ||| ||+|+++++|||+||||++|++|+ ++||..|++||+||||||++|||||| +++||+++++|
T Consensus 73 k~lV~~Grl-~~-G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~w 148 (875)
T PRK09819 73 KKLVQAGKL-II-GPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFW 148 (875)
T ss_pred HHHHHcCCE-eE-CcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEE
Confidence 999999999 66 778 999999999999999999999998 79999999999999999999999999 99999999999
Q ss_pred ecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCccCCcccccchHHHHHHHHHHHH
Q 015028 194 RIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAA 273 (414)
Q Consensus 194 R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n~~~~~~~~~~~~ 273 (414)
|+..+.. ..++.+|+|+|+| ||+|+||++|.+|+.+..+.. ...++++++..+++.+
T Consensus 149 r~~~~~~----~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g~~~~~---------------~~~~~~~~~~~~~~~~ 205 (875)
T PRK09819 149 RGVSDRH----GTDKTEFLWQSDD----GSEVLAQQLPLGYAIGKYLPE---------------DEEELKKRLDEYFGVL 205 (875)
T ss_pred ecccccc----cCCCceEEEECCC----CCeEEEEECccccccCCCCCc---------------CHHHHHHHHHHHHHHH
Confidence 9864321 1367899999999 999999999999987543211 2346777777777766
Q ss_pred HHhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcCC-CceEEEcChHHHHHHHHhcCCCCCcccccCCCCC-C
Q 015028 274 LAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDG-RVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYA-D 351 (414)
Q Consensus 274 ~~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~~-~~~i~~sT~~~yf~~l~~~~~~lp~~~Ge~~~~~-~ 351 (414)
+.+ ..++++|+|+|+|+++.. +++.++++.+|+.. .+++++||+++||+++++...+||+++|||++.. .
T Consensus 206 ~~~---~~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~ 277 (875)
T PRK09819 206 EKK---SSTKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYM 277 (875)
T ss_pred hhc---CCCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCccc
Confidence 654 578999999999986544 57888899999864 6899999999999999988789999999998643 3
Q ss_pred CCCCcccceecchhhHHHHHHHHHHHHHH-Hhh-------ccCCCChHHHHh---------hhhhccCCCCCCCC
Q 015028 352 HPNAYWTGYFTSRPALKGYVRMMSGYYLS-GLV-------VIYPYIDAPVKI---------SHRIENTTLSPSYP 409 (414)
Q Consensus 352 ~~~~ywtG~ysSr~~lK~~~R~~e~~L~~-ae~-------l~~~y~~~~~~~---------~~~~~~~~~~~~~~ 409 (414)
+.|+ ||||||+++|++||++|.+|+. +|. +|..||...|++ .|++..-|-.+.++
T Consensus 278 ~~Hr---G~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~ 349 (875)
T PRK09819 278 RVHR---SIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVH 349 (875)
T ss_pred cccC---CccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHH
Confidence 3454 9999999999999999999874 665 477899997776 46665555544443
No 5
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=6.4e-65 Score=494.66 Aligned_cols=272 Identities=31% Similarity=0.502 Sum_probs=215.3
Q ss_pred EEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcChHHHHHHHHHH
Q 015028 39 NVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLV 118 (414)
Q Consensus 39 ~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV 118 (414)
+||||||||||+||++|+++|.. ++.++|++++++|+++|+++|+++|++++++| ++..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~~---------~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~-~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYRR---------YLVNILDSVLDLLEEDPDFRFIDGQTAYLEDY-LEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHHH---------HHHHHHHHHHHHHHH-TT--EECTBCHHHHHH-HHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHHH---------HHHHHHHHHHHHHHhCCcceEeechhHHHHHH-HHhCCHHHHHHHHHH
Confidence 69999999999999999999976 99999999999999999999999999999877 556999999999999
Q ss_pred HCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEeecchh
Q 015028 119 DSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQ 198 (414)
Q Consensus 119 ~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~R~~~~ 198 (414)
++||||+|||+|+|+|++++++||+||||++|++|++++||+.+++||+||+|||+++||||| +++||+++|++|+.++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCC-CCCCcccCCCCCCccCCcccccchHHHHHHHHHHHHHHhh
Q 015028 199 DRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPP-DGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQA 277 (414)
Q Consensus 199 ~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~-~~~~~~~~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~~~~ 277 (414)
.++.++..+..+|+|+|+| ||+|+||+++.+|..+ .+. .+ +.+.++++.+++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~--------------------~~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGS--------------------EF-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTC--------------------CH-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCc--------------------cc-ccHHHHHHHHHHHH
Confidence 9988877889999999999 9999999999987652 111 01 23566777787777
Q ss_pred hhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcC-CCceEEEcChHHHHHHHHhcCCCCCcc-cccCCCCC
Q 015028 278 NVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKD-GRVNALYSTPSIYTDAKNAANEEWPLK-TEDFFPYA 350 (414)
Q Consensus 278 ~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~-~~~~i~~sT~~~yf~~l~~~~~~lp~~-~Ge~~~~~ 350 (414)
..+.++++|+++|+|.....+ ...+.+.++.+|+. ..+++++||+++||++++++ .++|+. +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d~~~~~~---~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDDDDGGPP---DEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEEHHHHHH---HHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecCCCCCCc---HHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 778999999999999322211 23444455555553 48999999999999999998 999999 99999974
No 6
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-55 Score=446.73 Aligned_cols=308 Identities=19% Similarity=0.276 Sum_probs=255.8
Q ss_pred CceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcChHHHHHHH
Q 015028 36 DKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVK 115 (414)
Q Consensus 36 ~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~pe~~~~vk 115 (414)
..-+||.|+|+|+|.+|+|+|.|+++ ++.+...+.+.+|+++|+|+|+.++ +.-.+|++|.+|+.+++++
T Consensus 279 s~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQ-AqQ~~WlkedhP~~f~kl~ 348 (1078)
T KOG4342|consen 279 SQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQ-AQQLEWLKEDHPGLFSKLQ 348 (1078)
T ss_pred cccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhh-HHHHHHHhhhChhHHHHHH
Confidence 35899999999999999999999998 8889999999999999999999665 5555899999999999999
Q ss_pred HHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEeec
Q 015028 116 GLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARI 195 (414)
Q Consensus 116 ~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~R~ 195 (414)
.++..||+-.|||.||++|.++|+|||++||++.|++|+.++||..++.-|+||+||+|+|||||+ +.+||+.|.+++.
T Consensus 349 e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQKL 427 (1078)
T KOG4342|consen 349 EFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQKL 427 (1078)
T ss_pred HHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred chhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCC-CCCCCCCCCcccCCCCCCccCCcccccchHHHHHHHHHHHHH
Q 015028 196 DYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPR-HYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAAL 274 (414)
Q Consensus 196 ~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~-~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~ 274 (414)
+||..|.| ++..|.|.|.| ||+|++|+.|. .|.... + +++.+..++
T Consensus 428 SWNniNSF---PhsTFnW~glD----GSqvl~HmPPgntYtad~----------------------~----v~dVL~tv~ 474 (1078)
T KOG4342|consen 428 SWNNINSF---PHSTFNWEGLD----GSQVLVHMPPGNTYTADG----------------------S----VEDVLKTVA 474 (1078)
T ss_pred cccccCcC---Cccceeeeecc----CceEEEecCCCCcccccC----------------------c----HHHHHHHHH
Confidence 99999876 56799999999 99999998775 575422 1 233333333
Q ss_pred HhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHH---HHhcCC-CceEEEc-ChHHHHHHHHhc---CCCCCcccccC
Q 015028 275 AQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIH---YVNKDG-RVNALYS-TPSIYTDAKNAA---NEEWPLKTEDF 346 (414)
Q Consensus 275 ~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~---~~N~~~-~~~i~~s-T~~~yf~~l~~~---~~~lp~~~Ge~ 346 (414)
......+.++=|+.+|-+.+++++.. +.++++.+ .-|..+ -++++.+ |+++||+++.+. +..||+|.|||
T Consensus 475 qnk~~~~~~~gl~lfG~GDGGGGPT~--eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GEL 552 (1078)
T KOG4342|consen 475 QNKDKGRANHGLFLFGFGDGGGGPTQ--EMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGEL 552 (1078)
T ss_pred hcCCccccCcceEEEEecCCCCCCcH--HHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchhe
Confidence 32222344555555664444433321 34444322 233444 5889999 999999999875 45699999999
Q ss_pred CCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhcc---------CCCChHHHHh
Q 015028 347 FPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVI---------YPYIDAPVKI 395 (414)
Q Consensus 347 ~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l~---------~~y~~~~~~~ 395 (414)
|.+. |+ |+|||++.+|+++|++|..|+.+|.++ +.||.+.++.
T Consensus 553 yfEf---Hr---GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~ 604 (1078)
T KOG4342|consen 553 YFEF---HR---GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQH 604 (1078)
T ss_pred EEEE---ec---CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHH
Confidence 8764 45 999999999999999999999998763 6799887765
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.6e-33 Score=310.84 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=226.4
Q ss_pred EEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcChHHHHHHHHHHH
Q 015028 40 VHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVD 119 (414)
Q Consensus 40 ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~ 119 (414)
|+.+.|+|+|..|+|++++..+ ++......++..|+.+|.++|+. +.+.+..|+++.+|+.+++ ++|+
T Consensus 200 I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~-s~~~~y~~l~~d~p~l~~~--~~v~ 267 (943)
T COG0383 200 IPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQ-SAAALYNWLKPDVPFLFSR--PAVE 267 (943)
T ss_pred ccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhh-hHHHHHHHhcCccHHHhhc--cccc
Confidence 9999999999999999999998 88899999999999999999995 4566778999999999999 9999
Q ss_pred CCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEeecchhh
Q 015028 120 SGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQD 199 (414)
Q Consensus 120 ~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~R~~~~~ 199 (414)
.|+|+++||+||++|+++++||+++||+++|++|+.++||...++.|.||+||.+++||||+ ..+|++.|+++++.|++
T Consensus 268 ~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klawn~ 346 (943)
T COG0383 268 FEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAWND 346 (943)
T ss_pred ccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HhhhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCccCCcccccchHHHHHHHHHHHHHHhhhh
Q 015028 200 RAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANV 279 (414)
Q Consensus 200 ~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~~~~~~ 279 (414)
.+.++. ..|.|+++| |+++++|..+.+++.. . ....+..+.++
T Consensus 347 tn~~Ph---~~~~w~~~d----g~e~~~hds~~~~~~d------~--------------------v~~~~~~r~~~---- 389 (943)
T COG0383 347 TNRFPH---DLLRWRWKD----GTENLAHDSICGCSSD------P--------------------VHREMEYRFEK---- 389 (943)
T ss_pred ccCCCh---hHheeeccc----ccccceeecCCCCccc------H--------------------HHHHHHhhhhh----
Confidence 988754 689999999 9999999887776321 0 00111111111
Q ss_pred cCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcCCCceEEEcChHHHHHHH----HhcCCCCCcccccCCCCCCCCCC
Q 015028 280 TRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAK----NAANEEWPLKTEDFFPYADHPNA 355 (414)
Q Consensus 280 ~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~~~~~i~~sT~~~yf~~l----~~~~~~lp~~~Ge~~~~~~~~~~ 355 (414)
.....++.+|.+.+++++. .++.+..+ ...+..+|... .......|++.|++|... |+
T Consensus 390 -~~~~~~~~~g~gd~ggg~~---~dm~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~---hr 451 (943)
T COG0383 390 -INQVGLYLYGYGDGGGGPS---IDMLENPE-----------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLEL---HR 451 (943)
T ss_pred -hccceeEEeeccCCCCCCC---HHHHhccc-----------cccccceeeecceeeeeecccccccchhhhhhc---cC
Confidence 2344555566443333322 12211111 11222222221 112356899999998865 56
Q ss_pred cccceecchhhHHHHHHHHHHHHHHHhhcc----------CCCChHHHHhh
Q 015028 356 YWTGYFTSRPALKGYVRMMSGYYLSGLVVI----------YPYIDAPVKIS 396 (414)
Q Consensus 356 ywtG~ysSr~~lK~~~R~~e~~L~~ae~l~----------~~y~~~~~~~~ 396 (414)
|+||++...|.++|++|..|..+|.+. ..||...++++
T Consensus 452 ---g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~ 499 (943)
T COG0383 452 ---GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNEL 499 (943)
T ss_pred ---ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHH
Confidence 999999999999999999998777642 56777777764
No 8
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=7.2e-23 Score=226.66 Aligned_cols=319 Identities=16% Similarity=0.146 Sum_probs=235.1
Q ss_pred ceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCC-cEEeec-hHHHHHHHHhcChHHHHHH
Q 015028 37 KINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNR-KFIYVE-MAFFQRWWRQQSKAMKVKV 114 (414)
Q Consensus 37 ~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~-kF~~~e-~~~l~~w~~e~~pe~~~~v 114 (414)
++.+|++.|+|||++|+.+.+.++. .+.+.++.+++.++++|.+ .|.... +..|+++ ....|+.++++
T Consensus 3 ~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~-l~v~~~~~~~~ 72 (943)
T COG0383 3 KKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDY-LAVPPELKDRV 72 (943)
T ss_pred ccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeee-EEecccchhhH
Confidence 4556999999999999999999988 7888899999999999954 455444 6667776 77899999999
Q ss_pred HHHHHCCCeEEeccee-eecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEe
Q 015028 115 KGLVDSGQLEFINGGM-CMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFA 193 (414)
Q Consensus 115 k~lV~~GRlE~vgG~W-vq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~ 193 (414)
+.+++.|++ .+ |+| .+.|.+++++|+.+||+++|.. ...++|..++.||.||+||+..|+||++ ..+||+.+.|+
T Consensus 73 ~~~~~~~~l-~i-g~~~~~~~~~~~~~e~~~rn~l~~~~-~~~~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~ 148 (943)
T COG0383 73 KLLIASGKL-GI-GPWYTQTDTFILSGESNVRNLLIGEF-DAERFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFG 148 (943)
T ss_pred HHHHhhcCc-cc-cCCCCeeEEEEeccccceeeeecchH-HHHHhhhhhccccccccchhhhhhhHHH-HhcCCchhhcc
Confidence 999999999 55 888 9999999999999999999999 5677889999999999999999999999 99999999999
Q ss_pred ecchhhH--h-------hhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCccCCcccccchHHH
Q 015028 194 RIDYQDR--A-------KRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEE 264 (414)
Q Consensus 194 R~~~~~~--~-------~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n~~~ 264 (414)
|+..-.. + ........+..|.++| |++++.+.++..|..+..+.-.+. ..++-
T Consensus 149 r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g~~I~~~gh--------------ahid~ 210 (943)
T COG0383 149 RGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNGNEIPAVGH--------------AHIDT 210 (943)
T ss_pred cccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhccccccccch--------------hhHHH
Confidence 9875221 0 1122355677899999 899999999999988766432211 11222
Q ss_pred HHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcCC-CceEEEcC----hHHHHHHHHhc-CCC
Q 015028 265 RVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDG-RVNALYST----PSIYTDAKNAA-NEE 338 (414)
Q Consensus 265 ~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~~-~~~i~~sT----~~~yf~~l~~~-~~~ 338 (414)
.+..-++..++. ..+..+++|.|+|+.+.. .++...+++.|... .....++. ..+|+...... ..+
T Consensus 211 aWlw~l~et~r~---a~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERK---ASTSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHH---HhhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 222223333333 567778899999988664 56777777777542 33334444 44444443332 235
Q ss_pred CCcccccCCCCC-CCCCCcc--cceecchhhHHHHHHHHHHHH-HHHhhc--------------cCCCChHHHHh
Q 015028 339 WPLKTEDFFPYA-DHPNAYW--TGYFTSRPALKGYVRMMSGYY-LSGLVV--------------IYPYIDAPVKI 395 (414)
Q Consensus 339 lp~~~Ge~~~~~-~~~~~yw--tG~ysSr~~lK~~~R~~e~~L-~~ae~l--------------~~~y~~~~~~~ 395 (414)
+++.+||+..-. .+-.+|. -..-+||+.+|..+...++.| ...+.+ +..||...+..
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w 357 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRW 357 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHhee
Confidence 789999987644 2212222 256699999999998888876 233444 35778776554
No 9
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=99.00 E-value=4e-09 Score=106.85 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=106.4
Q ss_pred EeecccCCc----c-ccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcChHH------
Q 015028 42 LVPHSHDDV----G-WLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAM------ 110 (414)
Q Consensus 42 vV~HSH~D~----~-Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~pe~------ 110 (414)
+|-|.|.-. + |....+..+. .+.+.+-.++.+|++.|++|+++.=+..|.+++++..|+.
T Consensus 2 fv~H~HqP~~~~~~~~~~~~~w~~~---------~~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~ 72 (360)
T PF03065_consen 2 FVLHAHQPYYRHPESGPYEEPWVFL---------HATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLE 72 (360)
T ss_dssp EEEEE---T-TTSHSCCCSHHHHHH---------HHHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHH
T ss_pred EEEECCCCCcCCCCCcchhhhhHHH---------HHHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhccccccc
Confidence 566888753 1 4433333332 4567778899999999888888765677777778878888
Q ss_pred ----------------------------------------HHHHHHHHHCCCeEEecceeeecccCCCCh-HHHHHHHHH
Q 015028 111 ----------------------------------------KVKVKGLVDSGQLEFINGGMCMHDEASPHY-IDMIDQTTL 149 (414)
Q Consensus 111 ----------------------------------------~~~vk~lV~~GRlE~vgG~Wvq~De~l~~g-EslIrql~~ 149 (414)
.+.+|+|+++|++|++|+++..+=.-+..- |++..|+..
T Consensus 73 ~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~ 152 (360)
T PF03065_consen 73 RSLARAELLREEKEFLLRANFTREDFERLLDFFREIIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEM 152 (360)
T ss_dssp HHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999998888888 999999999
Q ss_pred HHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCCcEEEEeecch
Q 015028 150 GHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDY 197 (414)
Q Consensus 150 G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi~~~v~~R~~~ 197 (414)
|.+.+++.||++|+..|+|.. +.+..+..+| +++||+++++.--..
T Consensus 153 ~~~~~~~~FG~~P~G~W~pE~-a~~~~l~~~l-~~~Gi~~~i~d~~~~ 198 (360)
T PF03065_consen 153 GREYFKKHFGRRPRGFWLPEC-AYSPGLEEIL-AEAGIRYTILDGHQL 198 (360)
T ss_dssp HHHHHHHHHSS--SBEE-GGG--B-TTHHHHH-HHTT--EEEEECHHH
T ss_pred HHHHHHHHhCCCCCceECccc-ccCHHHHHHH-HHcCCEEEEECcHHh
Confidence 999999999999999999986 7788899999 999999999886543
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=98.58 E-value=2.7e-08 Score=78.98 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=41.6
Q ss_pred cccceecchhhHHHHHHHHHHHHHHHhhc---------cCCCChHHHHh---------hhhhccCCCCCCC
Q 015028 356 YWTGYFTSRPALKGYVRMMSGYYLSGLVV---------IYPYIDAPVKI---------SHRIENTTLSPSY 408 (414)
Q Consensus 356 ywtG~ysSr~~lK~~~R~~e~~L~~ae~l---------~~~y~~~~~~~---------~~~~~~~~~~~~~ 408 (414)
||+||||||+++|++||++|++|+.+|.+ |.+||.+.++. .|++..-|-.+.+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V 71 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEV 71 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHH
Confidence 68999999999999999999999888764 56899887766 3665555444433
No 11
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=98.57 E-value=2.7e-08 Score=79.19 Aligned_cols=41 Identities=29% Similarity=0.500 Sum_probs=34.6
Q ss_pred cccceecchhhHHHHHHHHHHHHHHHhhc---------cCCCChHHHHhh
Q 015028 356 YWTGYFTSRPALKGYVRMMSGYYLSGLVV---------IYPYIDAPVKIS 396 (414)
Q Consensus 356 ywtG~ysSr~~lK~~~R~~e~~L~~ae~l---------~~~y~~~~~~~~ 396 (414)
||+|||||||.+|++||++|++|+.||.| +..||...++++
T Consensus 2 ~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~ 51 (80)
T PF09261_consen 2 YWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKA 51 (80)
T ss_dssp ES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHH
T ss_pred CcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHH
Confidence 89999999999999999999999999975 346888888874
No 12
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00082 Score=68.97 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=79.6
Q ss_pred HHHHHHhcChHHHHHHHHHHHCCCeEEecceeeeccc-CCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhH
Q 015028 99 FQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDE-ASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQ 177 (414)
Q Consensus 99 l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De-~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~l 177 (414)
...+|+..+++..+++|++.+.|.+|+++..-+-.-- .+...|++=-|++.|.+=..+.||..|+--|+|.+ ++...+
T Consensus 114 ~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlPEc-ay~pgi 192 (504)
T COG1543 114 ARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLPEC-AYAPGI 192 (504)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceechhh-ccccch
Confidence 3467788899999999999999999999776643322 23335999999999999888889999999999955 899999
Q ss_pred HHHHHhhcCCcEEEEe
Q 015028 178 AYLLGAELGFDSLYFA 193 (414)
Q Consensus 178 Pqil~~~~Gi~~~v~~ 193 (414)
+.+| +.+||+++++.
T Consensus 193 e~~l-~~~Gi~yf~vd 207 (504)
T COG1543 193 ERIL-KDAGIEYFFVD 207 (504)
T ss_pred HHHH-HhcCceEEEec
Confidence 9999 99999999987
No 13
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=96.40 E-value=0.033 Score=46.74 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCC-CCcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHH
Q 015028 74 NVLDSVISALFEDK-NRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHW 152 (414)
Q Consensus 74 ~~l~~vl~~L~~~p-~~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~ 152 (414)
..+..++++|+++. ..+|++.. .++.+. .+.+++++++| +|+.+-+|.-++....+.|.+.++|..+++
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~-~~~~~~--------~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~ 87 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIG-SWVERY--------PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSRE 87 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-H-HHHHHH--------HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeecc-cccccc--------cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHH
Confidence 45678889999884 23555443 333332 58899999999 999999998888888899999999999999
Q ss_pred HHHHHhCCCCceeeecCCCCC-chhHHHHHHhhcCCcE
Q 015028 153 FIKDSFGKLPRVGWQIDPFGH-SAVQAYLLGAELGFDS 189 (414)
Q Consensus 153 ~l~~~fG~~~~~~w~pD~FGh-s~~lPqil~~~~Gi~~ 189 (414)
.+++.+|..++. |. =|||. +..+-+++ +++|+++
T Consensus 88 ~l~~~~g~~~~~-f~-~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGRPPKG-FR-YPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHSSEESE-EE--GGGEECHHHHHHH-HHTT-EE
T ss_pred HHHHHhCCCCcE-EE-CCCCCCCHHHHHHH-HHcCCCc
Confidence 999999994443 33 45665 66788999 8999986
No 14
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=96.35 E-value=0.69 Score=45.84 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCC-CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHH
Q 015028 74 NVLDSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHW 152 (414)
Q Consensus 74 ~~l~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~ 152 (414)
.=+-.+|++|+++-- -+|++.. +..+.+| +.+|+.+++| .||.+=+|...+...-+.+...++|..+.+
T Consensus 77 vG~~RiLdlL~~~gv~aTffv~g------~~~e~~P---~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~~ 146 (297)
T TIGR03212 77 AGFWRLLRLFTERGIPVTVFGVA------MALARNP---EAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAIR 146 (297)
T ss_pred hCHHHHHHHHHHcCCCEEEEeEH------HHHHHCH---HHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHHH
Confidence 345678999999843 4666543 2355668 5677778899 889888997666666688899999999999
Q ss_pred HHHHHhCCCCceeeecCCCCCchhHHHHHHhh-cCCcEEEEeecc
Q 015028 153 FIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAE-LGFDSLYFARID 196 (414)
Q Consensus 153 ~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~-~Gi~~~v~~R~~ 196 (414)
-+++..|.+ ..||.. -.+|..++.|+ ++ .|+.+..-+..+
T Consensus 147 ~i~~~tG~~-P~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 147 LHTEVTGER-PLGWYT--GRTSPNTRRLV-AEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHhCCC-CceEEC--CCCChhHHHHH-HHhcCceEeCchhhc
Confidence 777767766 456653 35789999999 88 999987765544
No 15
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=94.86 E-value=0.6 Score=42.67 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCC-CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHH
Q 015028 77 DSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIK 155 (414)
Q Consensus 77 ~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~ 155 (414)
..+++.|+++.- .+|+... .| .+.+| +.+|+++++|- ||-+-+|.-++..-.+.+.+.+++..+.+.++
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g-----~~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSG-----SW-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEecc-----HH-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 467788888853 3666543 23 33455 57888999996 79999998888778889999999999999999
Q ss_pred HHhCCCCceeeecCCCC-CchhHHHHHHhhcCCcEE
Q 015028 156 DSFGKLPRVGWQIDPFG-HSAVQAYLLGAELGFDSL 190 (414)
Q Consensus 156 ~~fG~~~~~~w~pD~FG-hs~~lPqil~~~~Gi~~~ 190 (414)
+..|..|+. .-=|+| ++..+.+++ ++.|++.+
T Consensus 92 ~~~g~~~~~--fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPTL--FRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHhCCCCCE--EECCCcCCCHHHHHHH-HHcCCeEE
Confidence 999987753 334555 566678888 88998843
No 16
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=94.83 E-value=0.32 Score=47.45 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHcCC-CCcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHH
Q 015028 71 CVQNVLDSVISALFEDK-NRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTL 149 (414)
Q Consensus 71 ~v~~~l~~vl~~L~~~p-~~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~ 149 (414)
++.+.+..++++|+++. .-+|+... |+.+.+| +.||+++++| .||.+=+|.-.+....+.|.+..++..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 67778899999999985 34677643 2344566 5689999999 689888887766666788999999999
Q ss_pred HHHHHHHHhCCCCceeeecCCCCCch---hHHHHHHhhcCCcEEEEee
Q 015028 150 GHWFIKDSFGKLPRVGWQIDPFGHSA---VQAYLLGAELGFDSLYFAR 194 (414)
Q Consensus 150 G~~~l~~~fG~~~~~~w~pD~FGhs~---~lPqil~~~~Gi~~~v~~R 194 (414)
.++.+++..|..++ +|-+=.+..+. ...+++ ++.|+.+..-.-
T Consensus 95 s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS~~ 140 (265)
T TIGR03006 95 SKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSSIY 140 (265)
T ss_pred HHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEeec
Confidence 99988888888765 55544333333 346899 999999876553
No 17
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=94.81 E-value=0.46 Score=44.92 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCC-CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHH
Q 015028 77 DSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIK 155 (414)
Q Consensus 77 ~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~ 155 (414)
..+|+.|+++.- -+|++.. .| .+.+| +.+|+++++|- |+-+-+|.-++-...+.+.+.+++....+.++
T Consensus 53 ~~lL~~L~~~~vkATFFv~G-----~~-~~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~ 122 (224)
T TIGR02884 53 PKILDVLKEKKVPAAFFVTG-----HY-IKTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFK 122 (224)
T ss_pred HHHHHHHHHcCCCeEEEeec-----hh-hHHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHH
Confidence 467888888843 4666554 23 23445 68899999995 58788998778778899999999999999999
Q ss_pred HHhCCCCceeeecCCCC-CchhHHHHHHhhcCCcEE
Q 015028 156 DSFGKLPRVGWQIDPFG-HSAVQAYLLGAELGFDSL 190 (414)
Q Consensus 156 ~~fG~~~~~~w~pD~FG-hs~~lPqil~~~~Gi~~~ 190 (414)
+..|..+ ..|.-=|+| ++..+.+++ +++|++.+
T Consensus 123 ~~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~v 156 (224)
T TIGR02884 123 KVTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYTV 156 (224)
T ss_pred HHhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcEE
Confidence 9888762 335666888 477789999 89999854
No 18
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=93.74 E-value=2.8 Score=45.77 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=77.6
Q ss_pred CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeeccc--CCC--ChHHHHHHHHHHHHHHHHHhCCCCce
Q 015028 89 RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDE--ASP--HYIDMIDQTTLGHWFIKDSFGKLPRV 164 (414)
Q Consensus 89 ~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De--~l~--~gEslIrql~~G~~~l~~~fG~~~~~ 164 (414)
.-|++.+...+..+-....++..+.+|++++.|+.|++.-++..+=. ... -.+++++|+..+.+..++-||+.|+.
T Consensus 160 ~~ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~ 239 (615)
T COG1449 160 PNYSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSG 239 (615)
T ss_pred cceeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34665552233344466779999999999999999999988843322 222 24699999999999999999999999
Q ss_pred eeecCCCCCchhHHHHHHhhcCCcE
Q 015028 165 GWQIDPFGHSAVQAYLLGAELGFDS 189 (414)
Q Consensus 165 ~w~pD~FGhs~~lPqil~~~~Gi~~ 189 (414)
.|.+- +=.+.++.+++ +.+|+..
T Consensus 240 ~~~tE-l~y~~~i~~~~-~e~G~~~ 262 (615)
T COG1449 240 FWNTE-LAYNDQILEYF-EESGFSW 262 (615)
T ss_pred ccChh-hhccHHHHHHH-HHcCCcc
Confidence 99975 56888899999 9999995
No 19
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=93.55 E-value=1.3 Score=43.25 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCC-CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHH
Q 015028 76 LDSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFI 154 (414)
Q Consensus 76 l~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l 154 (414)
...+|+.|+++.- .+|++.. .| .+.+| +.+|+++++|- ||-+=+|.-++....+.+.+.++|..+.+.+
T Consensus 100 t~~iL~iLkk~~vkATFFv~G-----~~-i~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEG-----KW-VKENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeeh-----Hh-hhHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 3578899998853 4677654 34 33456 45788899996 6888899888888888999999999999999
Q ss_pred HHHhCCCCceeeecCCCCC-chhHHHHHHhhcCCcE
Q 015028 155 KDSFGKLPRVGWQIDPFGH-SAVQAYLLGAELGFDS 189 (414)
Q Consensus 155 ~~~fG~~~~~~w~pD~FGh-s~~lPqil~~~~Gi~~ 189 (414)
++..|..|+ |.-=|+|. +..+-+++ +.+|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 999998777 55557886 56788888 8899864
No 20
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=92.75 E-value=1.6 Score=47.94 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=60.2
Q ss_pred HHHHHHHHCCCeEEecceeeecccCC--------------------CCh-------HHHHHHHHHHHHHHHHHhCCCCce
Q 015028 112 VKVKGLVDSGQLEFINGGMCMHDEAS--------------------PHY-------IDMIDQTTLGHWFIKDSFGKLPRV 164 (414)
Q Consensus 112 ~~vk~lV~~GRlE~vgG~Wvq~De~l--------------------~~g-------EslIrql~~G~~~l~~~fG~~~~~ 164 (414)
++||+++++|-+||-+=+|..|.... ..+ +.+.+.+...++-+++..|..+++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 68999999999988766665443111 012 225678899999999999998875
Q ss_pred eeecCCCCC-chhHHHHHHhhcCCcEEEEeecc
Q 015028 165 GWQIDPFGH-SAVQAYLLGAELGFDSLYFARID 196 (414)
Q Consensus 165 ~w~pD~FGh-s~~lPqil~~~~Gi~~~v~~R~~ 196 (414)
..=|||. +..+-.++ +++|++..++.+..
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~~G 277 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLESG 277 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeCCC
Confidence 3446874 56688999 89999988886543
No 21
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=89.11 E-value=2 Score=47.23 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCC-CcEEeechHHHHHHHHhcChH----------------HHHHHHHHHHCCCeEEecceeeeccc
Q 015028 73 QNVLDSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKA----------------MKVKVKGLVDSGQLEFINGGMCMHDE 135 (414)
Q Consensus 73 ~~~l~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe----------------~~~~vk~lV~~GRlE~vgG~Wvq~De 135 (414)
.+.+..++..|+++-- .+|+... .|++. .|+ ..++||+++++|-+||-+=+|.-+.-
T Consensus 118 ~sny~~AlPILKkyg~pATfFvVg-----~wid~-~~~~~v~~~~~~~~r~~~LTW~qIrEM~~sGLvEIGSHT~sHh~~ 191 (672)
T PRK14581 118 SSFYRRVYPLLKAYKWSAVLAPVG-----TWIDT-ATDKKVDFGGLSTDRDRFATWKQITEMSKSGLVEIGAHTYASHYG 191 (672)
T ss_pred cchHHHHHHHHHHcCCCEEEEEec-----hhhcc-CcccccccccccccccccCCHHHHHHHHHCCCcEEEcCCcccccc
Confidence 3567788888888832 2333322 24332 221 23689999999999987777765531
Q ss_pred C--------------------CCChH-------HHHHHHHHHHHHHHHHhCCCCceeeecCCCCC-chhHHHHHHhhcCC
Q 015028 136 A--------------------SPHYI-------DMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGH-SAVQAYLLGAELGF 187 (414)
Q Consensus 136 ~--------------------l~~gE-------slIrql~~G~~~l~~~fG~~~~~~w~pD~FGh-s~~lPqil~~~~Gi 187 (414)
. ...+| .+-+.+...++-+++..|..+++ ..=|||. +..+-+++ +++|+
T Consensus 192 ~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~~--FayPyG~yn~~~~~ia-k~aGy 268 (672)
T PRK14581 192 VIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPRV--WVWPYGAPNGTVLNIL-RQHGY 268 (672)
T ss_pred cccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCE--EEcCCCCcCHHHHHHH-HHCCC
Confidence 1 11123 25566778888899999998875 3347885 77788999 99999
Q ss_pred cEEEEeecc
Q 015028 188 DSLYFARID 196 (414)
Q Consensus 188 ~~~v~~R~~ 196 (414)
+..++.+..
T Consensus 269 ~~afTt~~G 277 (672)
T PRK14581 269 QLAMTLDPG 277 (672)
T ss_pred cEEEECCCC
Confidence 999887754
No 22
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=79.37 E-value=2.3 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHCCCeEEeccee
Q 015028 108 KAMKVKVKGLVDSGQLEFINGGM 130 (414)
Q Consensus 108 pe~~~~vk~lV~~GRlE~vgG~W 130 (414)
.+.++-+.++|++|+||++||.|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 34555677899999999999987
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=74.77 E-value=93 Score=30.85 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCeEEecceeeec----ccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHHHhhcCC
Q 015028 112 VKVKGLVDSGQLEFINGGMCMH----DEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGF 187 (414)
Q Consensus 112 ~~vk~lV~~GRlE~vgG~Wvq~----De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil~~~~Gi 187 (414)
+.+|+.+++ -|+.+=+|.-. .....+.+.+.+++..+.+-+++..|..| .+|-+=.+-.+..+..++ +++|+
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p-~g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPV-TCSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCC-CEEeCCCccCCHHHHHHH-HHcCC
Confidence 567777777 88887788543 23456778899999999997888778765 455655566778899999 99999
Q ss_pred cEEEEeec
Q 015028 188 DSLYFARI 195 (414)
Q Consensus 188 ~~~v~~R~ 195 (414)
.+-.-.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 99855554
No 24
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=73.24 E-value=4.3 Score=35.64 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecce
Q 015028 71 CVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGG 129 (414)
Q Consensus 71 ~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~ 129 (414)
.....|..|-+.|.++|.+.-+..|++ += -++.+ +.|.++|++|||+++..+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~---e~-tgVs~---~~I~~~IreGRL~~~~~~ 78 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV---EE-TGVSE---KLILKFIREGRLQLKHFP 78 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH---HH-HCcCH---HHHHHHHHcCCeeccCCC
Confidence 556788899999999999887755532 21 33444 789999999999988443
No 25
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=56.49 E-value=1.2e+02 Score=27.97 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=79.1
Q ss_pred ccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCC-CcEEeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEecc
Q 015028 50 VGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKN-RKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFING 128 (414)
Q Consensus 50 ~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~-~kF~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG 128 (414)
..-..||++.+. .. ....++++|+++-- .+|++.. .| .+.+|+...++ +++|.- +-.=
T Consensus 65 k~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g-----~~-i~~~p~~~~~~---~~~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG-----SW-IERNPDLVKRI---AEAGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh-----Hh-hHHCHHHHHHH---HhccCe-ehhC
Confidence 344567777765 11 67889999999843 4677654 44 66777554444 447776 5557
Q ss_pred eeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCC-CchhHHHHHHhhcCCc
Q 015028 129 GMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFG-HSAVQAYLLGAELGFD 188 (414)
Q Consensus 129 ~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FG-hs~~lPqil~~~~Gi~ 188 (414)
+|.-.+..-.+.+.+..++...+..+.+..|.. ..+|- -|.| .+...-++. +..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~-~~~~r-~p~g~~~~~~~~~~-~~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGR-PRGFR-PPYGSYNESSLALA-RRLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCC-CceEE-CCCCccCHHHHHHH-HhCCCc
Confidence 777777777788888889999998899999988 33444 4445 446667777 778886
No 26
>PF07825 Exc: Excisionase-like protein; InterPro: IPR012884 The phage-encoded excisionase protein (Xis, P03699 from SWISSPROT) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual winged-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue wing. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA []. ; GO: 0003677 DNA binding, 0006310 DNA recombination; PDB: 1RH6_B 2IEF_B 2OG0_B 1LX8_A 1PM6_A.
Probab=49.00 E-value=34 Score=26.98 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=27.2
Q ss_pred HHHHHHhc--ChHHHHHHHHHHHCCCe----EEeccee-eecccCCCC
Q 015028 99 FQRWWRQQ--SKAMKVKVKGLVDSGQL----EFINGGM-CMHDEASPH 139 (414)
Q Consensus 99 l~~w~~e~--~pe~~~~vk~lV~~GRl----E~vgG~W-vq~De~l~~ 139 (414)
|++|-.+. .|--.+.|++.+++|++ +.+|.-| |+.|.-.+.
T Consensus 5 L~eWa~~~f~~pps~~TLrrwar~G~I~P~P~K~GR~w~v~~~A~~v~ 52 (77)
T PF07825_consen 5 LEEWAEEEFKRPPSIATLRRWARQGRIYPPPIKHGREWRVDEDARYVG 52 (77)
T ss_dssp HHHHHHCS-SS---HHHHHHHHHCT-EES--EEETTCEEEETT-EESS
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHCCCcCCCchhcCceEEECCCCEEec
Confidence 56773332 37788999999999999 5579999 888865443
No 27
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=48.99 E-value=27 Score=33.56 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=60.4
Q ss_pred eeeecCCCCCCCCceEEEEeecccC-C-----ccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechH
Q 015028 24 YIAYNTTAGIVPDKINVHLVPHSHD-D-----VGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMA 97 (414)
Q Consensus 24 ~~~~~~~~~~~~~~~~ihvV~HSH~-D-----~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~ 97 (414)
.||-|-.=...|+..+|++|-..-. | ..|..|.- .++ .....+--+-.++.-+++=|...|++.|+.
T Consensus 138 wigCnI~l~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlf--Lr~-----~~~~~rGWlldi~~cid~i~~~~FtL~diY 210 (254)
T PF06044_consen 138 WIGCNIDLSKIPESGKIFLVKNGQIIPPEEVLEQWQKTLF--LRT-----QNIESRGWLLDIMKCIDKIPKNEFTLDDIY 210 (254)
T ss_dssp EEEEEEEGGGS-GGG-EEEEETTEE--HHHHHHHHHHGGG--GGG-----S-HHHHHHHHHHHHHHHHS-SSEEEHHHHH
T ss_pred cceeeeecccCCCcceEEEEeCCeEcCHHHHHHHHHHHHH--HHh-----ccccccchHHHHHHHHHhcCccceeHHHHH
Confidence 3444444456688899998866543 1 12333321 000 001223345567777778889999999988
Q ss_pred HHHHHHHhcChH-------HHHHHHHHHHCCCeEEecce
Q 015028 98 FFQRWWRQQSKA-------MKVKVKGLVDSGQLEFINGG 129 (414)
Q Consensus 98 ~l~~w~~e~~pe-------~~~~vk~lV~~GRlE~vgG~ 129 (414)
-|++.+...+|. .|.+++.|=+.|-|||+|-|
T Consensus 211 ~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG 249 (254)
T PF06044_consen 211 AFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRG 249 (254)
T ss_dssp TTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STT
T ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCC
Confidence 888888887775 56677777899999999654
No 28
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=48.85 E-value=26 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHhcChHH-HHHHHHHHHCCCeEEecceeee-cccCC
Q 015028 99 FQRWWRQQSKAM-KVKVKGLVDSGQLEFINGGMCM-HDEAS 137 (414)
Q Consensus 99 l~~w~~e~~pe~-~~~vk~lV~~GRlE~vgG~Wvq-~De~l 137 (414)
|..|+.+..+.. +.+.+++|++|++ .|+|-=+. ++..+
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~~~~~~v 42 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQGRV-KVNGKVVKDPSYIV 42 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTTE-EETTEEESSTTSBE
T ss_pred HHHHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEcCCCCCC
Confidence 445666666665 9999999999999 78887754 55443
No 29
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=47.07 E-value=63 Score=33.10 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=69.1
Q ss_pred HHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCC-CCceeeecCCCCCchhHHHHH
Q 015028 103 WRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGK-LPRVGWQIDPFGHSAVQAYLL 181 (414)
Q Consensus 103 ~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~-~~~~~w~pD~FGhs~~lPqil 181 (414)
+.+++|.+.+.-.+|=++|+|. ||..+.+.+.+.+|+.. +++.++. ..++....=.+||+..+..++
T Consensus 6 ~~~~n~~~~~~a~~~~~~g~~~--------~~~yvIDl~~I~~N~~~----l~~~~~~~~~~l~~vvKAna~~~~ia~~l 73 (382)
T cd06811 6 LLKRNPALIEAALTLHQSGAIP--------PDTYVIDLDQIEENARL----LAETAEKYGIELYFMTKQFGRNPFLARAL 73 (382)
T ss_pred HhhhCHHHHHHHHHHHHcCCCC--------CCEEEecHHHHHHHHHH----HHHHHhhCCCEEEEEEccCCCCHHHHHHH
Confidence 5789999999999999999983 56888999999999873 5566654 467888888998888899999
Q ss_pred HhhcCCcEEEEeecchh
Q 015028 182 GAELGFDSLYFARIDYQ 198 (414)
Q Consensus 182 ~~~~Gi~~~v~~R~~~~ 198 (414)
.+.|++++.+.++..-
T Consensus 74 -~~~G~~g~~vas~~Ea 89 (382)
T cd06811 74 -LEAGIPGAVAVDFKEA 89 (382)
T ss_pred -HHcCCCeEeEecHHHH
Confidence 8999999999987654
No 30
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=42.95 E-value=46 Score=27.86 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCeEEecceeeec
Q 015028 112 VKVKGLVDSGQLEFINGGMCMH 133 (414)
Q Consensus 112 ~~vk~lV~~GRlE~vgG~Wvq~ 133 (414)
-||++||++|+||+.|-+-.|.
T Consensus 86 ~Ri~~Li~~G~le~~g~~~~mr 107 (111)
T PF12395_consen 86 YRIRELISQGVLEIKGDPKDMR 107 (111)
T ss_pred HHHHHHHHCCCEEEecCCCccc
Confidence 4899999999999996554443
No 31
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=42.83 E-value=36 Score=24.83 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCh-HHHHHHHHHHHCCCeEEecceee-ecccCCCChH
Q 015028 97 AFFQRWWRQQSK-AMKVKVKGLVDSGQLEFINGGMC-MHDEASPHYI 141 (414)
Q Consensus 97 ~~l~~w~~e~~p-e~~~~vk~lV~~GRlE~vgG~Wv-q~De~l~~gE 141 (414)
.-++.|+.+... .-+.++++++++|++ .|+|--+ .+..-+..|+
T Consensus 9 ~rLd~~L~~~~~~~SR~~~k~li~~G~V-~VNg~~~~~~~~~l~~Gd 54 (59)
T TIGR02988 9 ITLGQLLKELGIIDSGGQAKWFLQENEV-LVNGELENRRGKKLYPGD 54 (59)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHcCCE-EECCEEccCCCCCCCCCC
Confidence 346677666532 158999999999999 8888875 5555555444
No 32
>PRK10148 hypothetical protein; Provisional
Probab=38.26 E-value=12 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=14.1
Q ss_pred ceeeecCCCCCchhHH
Q 015028 163 RVGWQIDPFGHSAVQA 178 (414)
Q Consensus 163 ~~~w~pD~FGhs~~lP 178 (414)
+.||+.|+||++|++-
T Consensus 124 ~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 124 GFGKVTDKFGVPWMIN 139 (147)
T ss_pred ccEEEECCCCCEEEEE
Confidence 6799999999999863
No 33
>PRK12866 YciI-like protein; Reviewed
Probab=37.46 E-value=39 Score=27.64 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeec
Q 015028 96 MAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMH 133 (414)
Q Consensus 96 ~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~ 133 (414)
...+++. ....|+-++.++++.++|++ +.+|++..+
T Consensus 11 ~~~~~~r-~~~r~~H~~~L~~~~~~G~l-l~aGp~~~~ 46 (97)
T PRK12866 11 DDYLERR-EAYRAEHLALAQAATERGEL-LLAGALADP 46 (97)
T ss_pred CChHHHH-HHHHHHHHHHHHHHHhCCEE-EEeCCCCCC
Confidence 3456776 77899999999999999999 777988543
No 34
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=35.60 E-value=1.1e+02 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCh----------HHHHHHHHHHHCCCeEEec
Q 015028 96 MAFFQRWWRQQSK----------AMKVKVKGLVDSGQLEFIN 127 (414)
Q Consensus 96 ~~~l~~w~~e~~p----------e~~~~vk~lV~~GRlE~vg 127 (414)
..-+.+|+.+.++ -.+..|+++|++|+|+-+.
T Consensus 24 ~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~~~k 65 (77)
T PF00538_consen 24 LQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKGKLVQVK 65 (77)
T ss_dssp HHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCTSEEECS
T ss_pred HHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCCcEEeec
Confidence 3446678777653 2678899999999999987
No 35
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=34.35 E-value=23 Score=33.84 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHCCCeEEeccee--eecccCCCChH
Q 015028 108 KAMKVKVKGLVDSGQLEFINGGM--CMHDEASPHYI 141 (414)
Q Consensus 108 pe~~~~vk~lV~~GRlE~vgG~W--vq~De~l~~gE 141 (414)
.+-.+++.+++++|++.-+.|.| ++.|..|++|.
T Consensus 191 ~~a~~qvl~m~~~g~v~a~dG~~v~v~adsiCvHGD 226 (252)
T COG1540 191 EEALAQVLQMVREGKVTAIDGEWVAVEADSICVHGD 226 (252)
T ss_pred HHHHHHHHHHHhcCceEeeCCcEEeeecceEEEcCC
Confidence 34678999999999999999999 99999999997
No 36
>PRK07328 histidinol-phosphatase; Provisional
Probab=31.97 E-value=2.9e+02 Score=26.48 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=74.4
Q ss_pred EEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHHH----hcChHHHHHHHH
Q 015028 41 HLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWR----QQSKAMKVKVKG 116 (414)
Q Consensus 41 hvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~----e~~pe~~~~vk~ 116 (414)
++|+..|.-.+|-...+++............+..-++.++++++. +.+..+ +=..++.++-. +..+...+.++.
T Consensus 108 ~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~-~~~dvl-gH~d~i~~~~~~~~~~~~~~~~~il~~ 185 (269)
T PRK07328 108 YVIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARS-GLFDII-GHPDLIKKFGHRPREDLTELYEEALDV 185 (269)
T ss_pred eEEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHc-CCCCEe-eCccHHHHcCCCCchhHHHHHHHHHHH
Confidence 678877876666443333221111112223445566677777764 444333 11223333311 012334567888
Q ss_pred HHHCCC-eEEecceeee-cccCCCChHHHHHHHHHHHHHHHHHhCCCCcee---eecCCCC-CchhHHHHHHhhcCCcEE
Q 015028 117 LVDSGQ-LEFINGGMCM-HDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVG---WQIDPFG-HSAVQAYLLGAELGFDSL 190 (414)
Q Consensus 117 lV~~GR-lE~vgG~Wvq-~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~---w~pD~FG-hs~~lPqil~~~~Gi~~~ 190 (414)
+++.|. ||+-.+++-. ..+..|+.+ +++ +..++|+...+| =.|+..| +-.+.-.++ +.+|++.+
T Consensus 186 ~~~~g~~lEiNt~~~r~~~~~~yp~~~-il~--------~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l-~~~G~~~~ 255 (269)
T PRK07328 186 IAAAGLALEVNTAGLRKPVGEIYPSPA-LLR--------ACRERGIPVVLGSDAHRPEEVGFGFAEALALL-KEVGYTET 255 (269)
T ss_pred HHHcCCEEEEEchhhcCCCCCCCCCHH-HHH--------HHHHcCCCEEEeCCCCCHHHHhccHHHHHHHH-HHcCCcEE
Confidence 888888 8888777733 345666654 222 234456543322 1233444 234456778 89999998
Q ss_pred EEee
Q 015028 191 YFAR 194 (414)
Q Consensus 191 v~~R 194 (414)
.+-+
T Consensus 256 ~~f~ 259 (269)
T PRK07328 256 VVFR 259 (269)
T ss_pred EEEc
Confidence 5433
No 37
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=31.16 E-value=44 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.5
Q ss_pred HHHHhcChHHHHHHHHHHHCCCe
Q 015028 101 RWWRQQSKAMKVKVKGLVDSGQL 123 (414)
Q Consensus 101 ~w~~e~~pe~~~~vk~lV~~GRl 123 (414)
+-+....|+.+++++..|+-|+|
T Consensus 3 ~li~~mtPevY~rL~~AVElGKW 25 (93)
T PF07023_consen 3 QLIDSMTPEVYERLKQAVELGKW 25 (93)
T ss_pred HHHHhCCHHHHHHHHHHHHhCcC
Confidence 44567899999999999999999
No 38
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=30.46 E-value=1.3e+02 Score=33.33 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=70.3
Q ss_pred cccchHhHHhccccccchhHHHHHHHHHHHHHHHc--CCCCcEEeechHH--HHHHHHhcChHHH-HHHHHHHHCCCeEE
Q 015028 51 GWLKTVDQYYVGANNSIRGACVQNVLDSVISALFE--DKNRKFIYVEMAF--FQRWWRQQSKAMK-VKVKGLVDSGQLEF 125 (414)
Q Consensus 51 ~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~--~p~~kF~~~e~~~--l~~w~~e~~pe~~-~~vk~lV~~GRlE~ 125 (414)
.=|..||+||+ .-+. ......-++ +|.|.|...+..| |+.| .++..+ -.++-||.-|
T Consensus 54 ~~L~~FE~yy~--------~TL~---~~f~qkaeki~nptr~f~~d~~iF~~L~Pw---~sa~dFgt~~hTLigY~---- 115 (682)
T PHA03393 54 DDLDTFERYYK--------NTLT---QKFLQKAEKIANPTRQFSDDDNIFDGLSPW---TSANDFGTLCHTLIGYC---- 115 (682)
T ss_pred hHHHHHHHHHH--------HHHH---HHHHhhhhhhcCCcccccCCCceecCCccc---cCHHHHHHHHHHHHhhe----
Confidence 34678999987 1222 222233333 7888888655443 6777 444444 4445555433
Q ss_pred ecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCC---ceeee--cCCCCCchhHHHHH
Q 015028 126 INGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLP---RVGWQ--IDPFGHSAVQAYLL 181 (414)
Q Consensus 126 vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~---~~~w~--pD~FGhs~~lPqil 181 (414)
--|..++..+-.-..+..+|..|.+.+.+++...+ +.-|- .|=+-.+-.||..+
T Consensus 116 --vry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 116 --VRYNNPNDALYQDPELAYNLINALRLIYSHLPDPAPHQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred --EEecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCceeeEEccHHHHH
Confidence 23556666677777899999999999999998866 44555 33333566688766
No 39
>PRK12865 YciI-like protein; Reviewed
Probab=30.30 E-value=58 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=29.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecc
Q 015028 97 AFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHD 134 (414)
Q Consensus 97 ~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~D 134 (414)
..++.. .+..|+-++.++++.+.|++ +++|++...|
T Consensus 12 ~~~~~R-~~~r~~H~~~l~~~~~~G~l-~~~Gp~~~~~ 47 (97)
T PRK12865 12 GHLNVR-MDTRPTHLEYLNKLNAEGTL-KIAGPFLDDD 47 (97)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHhCCeE-EEecCCcCCC
Confidence 334554 67889999999999999999 7789997665
No 40
>smart00526 H15 Domain in histone families 1 and 5.
Probab=30.20 E-value=1.5e+02 Score=22.04 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCcEEeechHHHHHHHHhcCh--------HHHHHHHHHHHCCCeEEecc
Q 015028 74 NVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSK--------AMKVKVKGLVDSGQLEFING 128 (414)
Q Consensus 74 ~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~~e~~p--------e~~~~vk~lV~~GRlE~vgG 128 (414)
..+-.+|..|.+ ++ - +...-+.+|+++.++ -.+..++++|++|+|+-+.|
T Consensus 9 ~mI~eAI~~l~e---r~-G-sS~~aI~kyi~~~~~~~~~~~~~~l~~~Lk~~v~~G~l~q~kg 66 (66)
T smart00526 9 EMITEAISALKE---RK-G-SSLQAIKKYIEANYKVLPNNFRSLLKLALKKLVASGKLVQVKG 66 (66)
T ss_pred HHHHHHHHHcCC---CC-C-CCHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcCceeecCC
Confidence 344455555543 22 1 223445677666532 24567899999999987744
No 41
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=29.87 E-value=1.2e+02 Score=35.11 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHH-HhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcC--CCce-EEEcChHHHHHHHHhc
Q 015028 262 VEERVNDFVAAAL-AQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKD--GRVN-ALYSTPSIYTDAKNAA 335 (414)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~--~~~~-i~~sT~~~yf~~l~~~ 335 (414)
.+..+.+|+..-+ |..+ -..-.+|+|.|.-.++++ .....|++ ++..+ ..+. .+.|||..||-.|+.+
T Consensus 989 AQtiIDefIss~e~KWgQ-~S~vvlLLPHGyEGQGPd--HSSaRiER---fLqlcAe~nm~Va~psTPA~yFHLLRrq 1060 (1228)
T PRK12270 989 AQTIIDEFISSGEAKWGQ-RSGVVLLLPHGYEGQGPD--HSSARIER---FLQLCAEGNMTVAQPSTPANYFHLLRRQ 1060 (1228)
T ss_pred hHHHHHHHHhhhHhhhcc-ccceEEEccCCcCCCCCC--cchHHHHH---HHHhhccCCeEEEccCChHHHHHHHHHH
Confidence 3445677776543 2221 123356778986655543 22233443 33433 3454 5789999999999865
No 42
>PRK12864 YciI-like protein; Reviewed
Probab=28.77 E-value=63 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=28.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeec
Q 015028 97 AFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMH 133 (414)
Q Consensus 97 ~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~ 133 (414)
..+++- +..+|+-++.++++.++|++ +++|+...+
T Consensus 13 ~~~~~R-~~~r~~H~~~l~~~~~~G~~-~~~Gp~~~~ 47 (89)
T PRK12864 13 DALEKR-APFREAHLDRLAKLKEQGIL-ITLGPTKDL 47 (89)
T ss_pred CcHHHH-HHhHHHHHHHHHHHHhCCeE-EEecCCCCC
Confidence 445554 77899999999999999999 667888543
No 43
>smart00363 S4 S4 RNA-binding domain.
Probab=25.64 E-value=96 Score=21.17 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCCeEEecceee-ecccCCCCh
Q 015028 109 AMKVKVKGLVDSGQLEFINGGMC-MHDEASPHY 140 (414)
Q Consensus 109 e~~~~vk~lV~~GRlE~vgG~Wv-q~De~l~~g 140 (414)
.-+..+++++++|++ .|+|--+ .++.-+..+
T Consensus 14 ~s~~~~~~~i~~g~i-~vng~~~~~~~~~l~~g 45 (60)
T smart00363 14 PSRSQARKLIEQGRV-KVNGKKVTKPSYIVKPG 45 (60)
T ss_pred cCHHHHHHHHHcCCE-EECCEEecCCCeEeCCC
Confidence 458999999999999 6788776 666655544
No 44
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=23.71 E-value=1.6e+02 Score=22.59 Aligned_cols=47 Identities=26% Similarity=0.548 Sum_probs=27.9
Q ss_pred HHHHHHHc--CCCCcEEeechHHHHHHHHhcC-hHHHHHHHHHHHCCCeEEec
Q 015028 78 SVISALFE--DKNRKFIYVEMAFFQRWWRQQS-KAMKVKVKGLVDSGQLEFIN 127 (414)
Q Consensus 78 ~vl~~L~~--~p~~kF~~~e~~~l~~w~~e~~-pe~~~~vk~lV~~GRlE~vg 127 (414)
.||+.|+. -+.-+|.+-+ +.+.. -+.. -+.+..+-+||.+|+||+-.
T Consensus 5 ~Ile~L~~k~~~KskfYfkD--~~k~~-pd~k~R~vKKi~~~LV~Eg~l~yWS 54 (67)
T PF08679_consen 5 KILEFLEAKKKKKSKFYFKD--FYKAF-PDAKPREVKKIVNELVNEGKLEYWS 54 (67)
T ss_dssp HHHHHHSSCCCHSS-EEHHH--HHHH--TTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhccCCCCceeHHH--HHHHC-CCcCHHHHHHHHHHHHhhCeEEEEc
Confidence 56777762 2455677544 11112 2333 36778888999999999863
No 45
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=22.39 E-value=3e+02 Score=24.58 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=78.3
Q ss_pred HHhhhccCCceeeeecCCCCCCCCceE-EEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcE
Q 015028 13 ILAGVINGKSEYIAYNTTAGIVPDKIN-VHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKF 91 (414)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF 91 (414)
.+-+..+|.|-. =.+.+..+++..+ .++.|-. +.||-+. ....+..++..|++-...+=
T Consensus 8 ~~~~~~~~rs~~--~~s~~~K~~~~~~~~r~~pka---PdwLd~~---------------A~~~Wrrvvp~L~e~~ll~~ 67 (160)
T COG3747 8 AQLKLLGGRSPG--RDSGGRKVFEDAKFGRLAPKA---PDWLDPT---------------AKKEWRRVVPFLEELKLLKP 67 (160)
T ss_pred HHHHhccCCCCC--cccccccCCCCccccccCCCC---ccccCHH---------------HHHHHHHHHHHHHHhccCCH
Confidence 345666776642 3345555555544 3333322 4565443 23455667777766544331
Q ss_pred EeechHHHHHHHHhcChHHHHHHHHHHHCCCeEEeccee--eecccCCCChHHHHHHHHHHHHHHHHHhCCCCc
Q 015028 92 IYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGM--CMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPR 163 (414)
Q Consensus 92 ~~~e~~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~W--vq~De~l~~gEslIrql~~G~~~l~~~fG~~~~ 163 (414)
.+...|+.| ...+..+++.+..+-+.|-+ +++--| +-..-++.-.++.+|||+ + +..+||..|.
T Consensus 68 --~D~~~Le~Y-C~~ysiY~~av~~lkk~G~i-i~~~~~g~~krNPav~~~sdA~~~l~---k-laSeLGltP~ 133 (160)
T COG3747 68 --ADLTLLELY-CVAYSIYRNAVAHLKKHGFI-ITNQFSGRVKRNPAVQAASDAIRNLL---K-LASELGLTPS 133 (160)
T ss_pred --HHHHHHHHH-HHHHHHHHHHHHHHHHccee-eeccccceecCChHHHHHHHHHHHHH---H-HHHHhCCChH
Confidence 346667776 66778888888888888887 665445 566667778889999998 3 8888998764
No 46
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=21.96 E-value=2.7e+02 Score=24.66 Aligned_cols=57 Identities=5% Similarity=-0.017 Sum_probs=41.2
Q ss_pred HhcChHHHHHHHHHHHCCCeEEecceeeecc---cCCCChHHHHHHHHHHHHHHHHHhCCC
Q 015028 104 RQQSKAMKVKVKGLVDSGQLEFINGGMCMHD---EASPHYIDMIDQTTLGHWFIKDSFGKL 161 (414)
Q Consensus 104 ~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~D---e~l~~gEslIrql~~G~~~l~~~fG~~ 161 (414)
....++.++.|++.++.||+++. =-....+ ..+.==+.+++++..-.+.+++.+|..
T Consensus 42 ~~lE~~ir~~i~~~l~RGkV~v~-i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~ 101 (159)
T PF03755_consen 42 SSLEPEIRKLIRKKLSRGKVEVS-IRVERSSESAVELRINEELAKAYYEALKELAEELGLA 101 (159)
T ss_pred HHHHHHHHHHHHHhcccceEEEE-EEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 44558999999999999999876 3332222 223334588888888888899998773
No 47
>PF03795 YCII: YCII-related domain; InterPro: IPR005545 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (e.g. in Q9AJZ7 from SWISSPROT). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This entry also covers what was previously known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Q9A8M4 from SWISSPROT, suggesting that this domain may plays a role in transcription initiation. This domain is named after the most conserved motif in the alignment.; PDB: 1S7I_A 1MWQ_A.
Probab=21.43 E-value=1.1e+02 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.8
Q ss_pred HhcChHHHHHHHHHHHCCCeEEecceeeecc
Q 015028 104 RQQSKAMKVKVKGLVDSGQLEFINGGMCMHD 134 (414)
Q Consensus 104 ~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~D 134 (414)
.+..++..+-++++.++|++ +.+|+.+-+|
T Consensus 18 ~~~~~~H~~~~~~l~~~G~~-~~~G~~~~~~ 47 (95)
T PF03795_consen 18 QELRPAHLAYLKELKEAGVL-VASGPFLDTD 47 (95)
T ss_dssp HHCHHHHHHHHHHHHHTT-E-EEECEEECCC
T ss_pred HHHHHHHHHHHHHHHHCCCE-EeccCccCCC
Confidence 56678889999999999999 6668886655
No 48
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=90 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCC
Q 015028 97 AFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEAS 137 (414)
Q Consensus 97 ~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l 137 (414)
..++. .+...|.-++.++++-++||| ++.||..-.|-..
T Consensus 12 ~~~e~-r~~~r~~H~~~L~~~~a~G~l-l~sGP~~~~dg~~ 50 (92)
T COG2350 12 NPLEK-RLAVRPAHLARLKQLYAEGRL-LTSGPFPDRDGGP 50 (92)
T ss_pred CHHHH-HhhhhHHHHHHHHHhhhcCeE-EEeCCCCCCCCCC
Confidence 33443 477889999999999999999 6779997776554
No 49
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=21.00 E-value=42 Score=28.27 Aligned_cols=78 Identities=10% Similarity=0.207 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCcEEe-ech----HHHHHHHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChH
Q 015028 67 IRGACVQNVLDSVISALFEDKNRKFIY-VEM----AFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYI 141 (414)
Q Consensus 67 ~~~~~v~~~l~~vl~~L~~~p~~kF~~-~e~----~~l~~w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gE 141 (414)
...+++..++...++.++++|++..+. .|. ..+.+.+.+..-+....+.++|++|+= .|-. -+|. +.
T Consensus 21 ~~~ekL~~~i~~~~~~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~i~~iI~eG~~---~Gef-r~d~---d~- 92 (133)
T PF08359_consen 21 SPEEKLRALIEAHLDFLEENPDLAIVLSLELRQSNEELRKKINEIRREYLRIIEEIIEEGQE---QGEF-RKDL---DP- 92 (133)
T ss_dssp SHHHHHHHHHHHHHHHHHT-HHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTSB--TT-----H-
T ss_pred CHHHHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcc-CCCC---CH-
Confidence 344689999999999999999864332 231 234455565566777777888877765 2433 1221 12
Q ss_pred HHHHHHHHHHH
Q 015028 142 DMIDQTTLGHW 152 (414)
Q Consensus 142 slIrql~~G~~ 152 (414)
.+++++..|.-
T Consensus 93 ~~~~~~i~G~i 103 (133)
T PF08359_consen 93 ELAARFIFGMI 103 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36666666643
No 50
>PRK12569 hypothetical protein; Provisional
Probab=20.86 E-value=64 Score=31.15 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCeEEeccee--eecccCCCChH
Q 015028 109 AMKVKVKGLVDSGQLEFINGGM--CMHDEASPHYI 141 (414)
Q Consensus 109 e~~~~vk~lV~~GRlE~vgG~W--vq~De~l~~gE 141 (414)
+..+++++++++|++.-+.|.| +..|+.|.+|+
T Consensus 193 ~~~~~~~~m~~~g~v~t~~G~~i~~~adTiCvHGD 227 (245)
T PRK12569 193 QVAAKVLRACREGKVRTVDGKDIDIDFDSICIHSD 227 (245)
T ss_pred HHHHHHHHHHHcCCEEecCCCEEEecCCEEEECCC
Confidence 3779999999999999999999 88899999987
No 51
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=20.32 E-value=3e+02 Score=24.21 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=39.3
Q ss_pred HHHHHHhc-ChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015028 99 FQRWWRQQ-SKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGK 160 (414)
Q Consensus 99 l~~w~~e~-~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~ 160 (414)
+..|+.+. +|++.+++|+-|++.|=-+.|+.=.-+---..+.|-.+=+-+.+ +.++.|.
T Consensus 54 v~~WI~~hm~p~l~nklkQaIRArRKRhFNAE~qhTrKKSIDLey~vW~rLs~---~a~~~~~ 113 (150)
T PRK05097 54 VLEWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEYRVWQRLAG---LAQRRGK 113 (150)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHccCCcccccccccCccccHHHHHHHHH---HHHHcCC
Confidence 55787765 89999999999988876566666555555556666555555443 3344444
Done!