BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015029
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
pdb|2XCM|D Chain D, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
Length = 92
Score = 150 bits (379), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/91 (78%), Positives = 81/91 (89%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 303
KC+YEVLSTK+EI LAKA+ I W+SLE K
Sbjct: 62 DKCKYEVLSTKIEICLAKADIITWASLEHGK 92
>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|T Chain T, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|U Chain U, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
Length = 90
Score = 150 bits (378), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/88 (79%), Positives = 80/88 (90%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 1 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 61 DKCKYEVLSTKIEICLAKADIITWASLE 88
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
K ++++YQ +VV+T+ K + +V V+F E+ LS + +P E Y+ + L IIP
Sbjct: 9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 68
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQR 310
+ ++VLSTK+EI+L K E ++W LE P++
Sbjct: 69 EQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQ 106
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A +L+ +A + F +E A YSQAIE++P++A + +R+ A ++ + + A+ DA R
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
AIEL+ K Y+R+A + M L ++ A E + P D
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A L+ + E + FE A Y +AIE++P +A F +RA A KL N+ AV D R
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
AI ++P+ SKAY R A L ++ A +K L P + + + +K
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A +L+ +A + F +E A YSQAIE++P++A + +R+ A ++ + + A+ DA R
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
AIEL+ K Y+R+A + M L ++ A E + P D
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A +L+ +A + F +E A YSQAIE++P++A + +R+ A ++ + + A+ DA R
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
AIEL+ K Y+R+A + M L ++ A E + P D
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
KE F + A Y++ I+ +P A +++RA A KL +F EA+AD N+AIE +P+
Sbjct: 12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Query: 70 SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
+AY RKATA + ++EY ET A K A + G S
Sbjct: 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
KE F + A Y++ I+ +P A +++RA A KL +F EA+AD N+AIE +P+
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206
Query: 70 SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
+AY RKATA + ++EY ET A K A + G S
Sbjct: 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 245
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
+A ++ K E F + A Y++AI+ +P A+L+++RA KL F A+ D
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
I+LEP+ K Y RKA A +++Y A +K L
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62
+L++K +A + A YS+AI++ P++ L+++R+ A K ++ +A D +
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
++L+P K Y RKA A L +E AK E+G
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A + Y +A+E+ PN+A + + A K ++ +A+ +A+EL+P+ +KA++R+
Sbjct: 25 YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 78 TACMKLEEYETAKVALEKGASLAPGDSR 105
A K +Y+ A +K L P +++
Sbjct: 85 NAYYKQGDYQKAIEDYQKALELDPNNAK 112
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
++ A + Y +A+E+ PN+A+ + R A K ++ +A+ D +A+EL+P+ +KA
Sbjct: 59 YQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
NSAE + + A K ++ +A+ +A+EL+P+ + A++ A K +Y+ A
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 94 EKGASLAPGDSR 105
+K L P +++
Sbjct: 67 QKALELDPNNAK 78
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A +L+++ F+ + A Y +AI +P A + +RA +K+Q +A+AD R
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
A+EL+ KA++ +++E Y+ A L++ SLA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
+A + + K E F + A Y++A++ P +A L+++RA KL F A+ D +
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
I L+ K Y RKA + + E+ A+ A E + P +
Sbjct: 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A +L+++ F+ + A Y +AI +P A + +RA +K+Q +A+AD R
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
A+EL+ KA++ +++E Y+ A L++ SLA
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANR 61
L K+ E F + A Y+QA+ + + A L +RA +KL+++ +A +A++
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115
AIE + KA +R++ A KL + A + L++ SL P + F ++ G
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A + Y +A+E+ PN+AE + + A K ++ EA+ +A+EL+P+ ++A++
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 78 TACMKLEEYETAKVALEKGASLAPGDSR 105
A K +Y+ A +K L P ++
Sbjct: 85 NAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
++ A + Y +A+E+ PN+AE + + A K ++ EA+ +A+EL+P+ ++A
Sbjct: 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
NSAE + + A K ++ EA+ +A+EL+P+ ++A++ A K +Y+ A
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 94 EKGASLAPGDSR 105
+K L P ++
Sbjct: 67 QKALELDPNNAE 78
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
L+ + A + A DLY+QA+ I+P + ++RA A +A DA A
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
++P SKA+ R A + +Y+ AK A EKG
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A + Y +A+E+ PN+AE + + A K ++ EA+ +A+EL P+ ++A++
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 78 TACMKLEEYETAKVALEKGASLAPGDSR 105
A K +Y+ A +K L P ++
Sbjct: 85 NAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
++ A + Y +A+E+ PN+AE + + A K ++ EA+ +A+EL P+ ++A
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
NSAE + + A K ++ EA+ +A+EL P+ ++A++ A K +Y+ A
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 94 EKGASLAPGDSR 105
+K L P ++
Sbjct: 67 QKALELYPNNAE 78
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A + Y +A+E+ P SAE + + A K ++ EA+ +A+EL+P ++A++
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 78 TACMKLEEYETAKVALEKGASLAP 101
A K +Y+ A +K L P
Sbjct: 77 NAYYKQGDYDEAIEYYQKALELDP 100
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A + Y +A+E+ P SAE + + A K ++ EA+ +A+EL+P ++A++
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Query: 78 TACMKLEEYETAKVALEKGASLAP 101
A K +Y+ A +K L P
Sbjct: 111 NAYYKQGDYDEAIEYYQKALELDP 134
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
AE + + A K ++ EA+ +A+EL+P ++A++ A K +Y+ A +K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 96 GASLAP 101
L P
Sbjct: 61 ALELDP 66
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A L+ + F F A Y AIE+ PN +++ + I + + + +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALE--------KGASLAPGDSRFTNLIKEF 113
A+E++P SKA R+A+A L + A L GAS+ P R NL K+
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER--NLNKQA 142
Query: 114 VGLLMQN 120
+ +L +N
Sbjct: 143 MKVLNEN 149
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
+A++L P Y+ + L++Y+ AK +K SL P
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A L+ + F F A Y AIE+ PN +++ + I + + + +
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALE--------KGASLAPGDSRFTNLIKEF 113
A+E++P SKA R+A+A L + A L GAS+ P R NL K+
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER--NLNKQA 138
Query: 114 VGLLMQN 120
+ +L +N
Sbjct: 139 MKVLNEN 145
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
+A++L P Y+ + L++Y+ AK +K SL P
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 337
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
+ ++ P + + +K+ ++ AV A+E++PS +KA +R+A L+E
Sbjct: 263 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 322
Query: 86 YETAKVALEKGASLAPGD 103
Y+ A L+K +AP D
Sbjct: 323 YDQALADLKKAQEIAPED 340
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67
A D +A+EI P++ + RAQ L+ + +A+AD +A E+ P
Sbjct: 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
A +KLQ F+ A+ N+A+EL+ + K +R+ A + + ++E A+ +K L P
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 D 103
+
Sbjct: 263 N 263
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98
F + A +KL+ +T+AV ++A+ L+ + K +R+ A + + E+E+AK EK
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 99 LAP 101
+ P
Sbjct: 380 VNP 382
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98
F + A +KL+ +T+AV ++A+ L+ + K +R+ A + + E+E+AK EK
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 99 LAP 101
+ P
Sbjct: 380 VNP 382
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
++ A + Y +A+E+ PN+AE + + A K ++ EA+ +A+EL+P+ ++A
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
NSAE + + A K ++ EA+ +A+EL+P+ ++A++ A K +Y+ A
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 94 EKGASLAPGDSR 105
+K L P ++
Sbjct: 67 QKALELDPNNAE 78
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
A +KLQ F+ A+ N+A+EL+ + K R+ A + + ++E A+ +K L P
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 D 103
+
Sbjct: 263 N 263
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81
Y+ + +A+++ N++ ++ R Q + LQN+ +A D ++A EL+P Y + AC+
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ--LACL 347
Query: 82 KLEE 85
E
Sbjct: 348 AYRE 351
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
A L+ K + F + ++ A Y+ A+E+ + +++ + + + + + V + +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTK 64
Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
A+EL+P SK R+A+A L ++ A L
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDL 96
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67
++ A + Y +A+E+ P SAE + + A K ++ EA+ +A+EL+P
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
SAE + + A K ++ EA+ +A+EL+P ++A++ A K +Y+ A +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 95 KGASLAP 101
K L P
Sbjct: 62 KALELDP 68
>pdb|1WH0|A Chain A, Solution Structure Of The Cs Domain Of Human Usp19
Length = 134
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 215 RHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV---------PG---EEAYH 261
+++ Y+K P+ VVV V+ K I V F EQ ++ PG +
Sbjct: 21 KNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFR 80
Query: 262 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
+Q +L I P +C + +++++I L K + +W LE
Sbjct: 81 WQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
A Y++AI+I+P A+ ++ A N EA+A A++L+P AY A C
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH-C 154
Query: 81 MKL 83
+++
Sbjct: 155 LQI 157
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78
Y +AI ISP A+ +++ ++Q+ A+ RAI++ P+ + A+ A+
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A D ++ A+ + PN L+ EAVA RA+EL+P ++ +
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 78 TACMKLEEYETA 89
+C+ L + A
Sbjct: 253 ISCINLGAHREA 264
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A D ++ A+ + PN L+ EAVA RA+EL+P ++ +
Sbjct: 184 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 243
Query: 78 TACMKLEEYETA 89
+C+ L + A
Sbjct: 244 ISCINLGAHREA 255
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A D ++ A+ + PN L+ EAVA RA+EL+P ++ +
Sbjct: 193 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Query: 78 TACMKLEEYETA 89
+C+ L + A
Sbjct: 253 ISCINLGAHREA 264
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A D ++ A+ + PN L+ EAVA RA+EL+P ++ +
Sbjct: 170 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 229
Query: 78 TACMKLEEYETA 89
+C+ L + A
Sbjct: 230 ISCINLGAHREA 241
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
++ A D ++ A+ + PN L+ EAVA RA+EL+P ++ +
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 78 TACMKLEEYETA 89
+C+ L + A
Sbjct: 293 ISCINLGAHREA 304
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81
L A+E++PN A+L A N+ A A+ RA+EL P ++ W K A +
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-LWNKLGATL 216
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRKATACMKLEE 85
+A+E+ P+ A+L+ ++ A++ N + DA NRA+++ P + + A + + +
Sbjct: 197 RAVELRPDDAQLW-NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 86 YETAKVALEKGASLAPGDS 104
Y+ A L + + G +
Sbjct: 256 YDLAAKQLVRAIYMQVGGT 274
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81
L A+E++PN A+L A N+ A A+ RA+EL P ++ W K A +
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-LWNKLGATL 216
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRKATACMKLEE 85
+A+E+ P+ A+L+ ++ A++ N + DA NRA+++ P + + A + + +
Sbjct: 197 RAVELRPDDAQLW-NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 86 YETAKVALEKGASLAPGDS 104
Y+ A L + + G +
Sbjct: 256 YDLAAKQLVRAIYMQVGGT 274
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA---NRAIEL-EPSMSKAYWRKAT 78
D YS+A++ + EL +A T+A AD NR I+L E + +A R AT
Sbjct: 58 DKYSEALKDAQEKLELAEKKA---------TDAEADVASLNRRIQLVEEELDRAQERLAT 108
Query: 79 ACMKLEEYETAKVALEKG 96
A KLEE E A E+G
Sbjct: 109 ALQKLEEAEKAADESERG 126
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA---NRAIEL-EPSMSKAYWRKAT 78
D YS+A++ + EL +A T+A AD NR I+L E + +A R AT
Sbjct: 51 DKYSEALKDAQEKLELAEKKA---------TDAEADVASLNRRIQLVEEELDRAQERLAT 101
Query: 79 ACMKLEEYETAKVALEKG 96
A KLEE E A E+G
Sbjct: 102 ALQKLEEAEKAADESERG 119
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA---NRAIEL-EPSMSKAYWRKAT 78
D YS+A++ + EL +A T+A AD NR I+L E + +A R AT
Sbjct: 58 DKYSEALKDAQEKLELAEKKA---------TDAEADVASLNRRIQLFEEELDRAQERLAT 108
Query: 79 ACMKLEEYETAKVALEKG 96
A KLEE E A E+G
Sbjct: 109 ALQKLEEAEKAADESERG 126
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
N+TE++ +AI+L+P SK + K A LE YE A
Sbjct: 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74
DD+ Y Y N L + A IKL+ + EA+ N + E KA +
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHL--NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF 268
Query: 75 RKATACMKLEEYETAKVALEKGASLAPGD 103
R+ A +L + ++A+ K AP D
Sbjct: 269 RRGKAKAELGQMDSARDDFRKAQKYAPDD 297
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
KEA I F+ A Y +A+ +SPN A + + A + A+ RAIEL+P
Sbjct: 214 KEARI---FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Query: 70 SKAYWRKATA 79
AY A A
Sbjct: 271 PDAYCNLANA 280
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK 76
F A D ++ A+ + P L+ +R A++ + +E +A RA+E++P ++ +
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLW-NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287
Query: 77 ATACMKLEEYETA 89
+C+ L Y A
Sbjct: 288 GISCINLGAYREA 300
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
FE A+ Y +AIE+ P++ + ++A + + F E V +A+E+
Sbjct: 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 357 NKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE-----GSPPD-GMEMK 410
+ + A++DED RR ++K+F +S L ++KE+ + ++E S PD G++
Sbjct: 101 GRLICLVRAESDEDARRRLEKTF-DSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQP 159
Query: 411 KWE 413
W
Sbjct: 160 XWR 162
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 29 IEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88
+ + SAE + A+ + A+ RAI L + AY++ + E++
Sbjct: 66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDK 125
Query: 89 AKVALEKGASLAPG 102
A A EK S+ PG
Sbjct: 126 AIEAYEKTISIKPG 139
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
+E A + +++AIE + A + + A + A+A ++A+EL+ S + AY+
Sbjct: 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98
Query: 78 TACMKLEEYETAKVALEKG--ASLAPGD 103
+ E Y+ AK EK A + GD
Sbjct: 99 NVYVVKEMYKEAKDMFEKALRAGMENGD 126
>pdb|2B9C|A Chain A, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
pdb|2B9C|B Chain B, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
Length = 147
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 60 NRAIEL-EPSMSKAYWRKATACMKLEEYETAKVALEKG 96
NR I+L E + +A R ATA KLEE E A E+G
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERG 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,977,644
Number of Sequences: 62578
Number of extensions: 476182
Number of successful extensions: 925
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 108
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)