Query 015029
Match_columns 414
No_of_seqs 406 out of 4052
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 5.4E-88 1.2E-92 668.8 38.8 356 1-414 1-356 (356)
2 KOG1309 Suppressor of G2 allel 100.0 4.4E-69 9.5E-74 458.4 16.3 195 212-412 2-196 (196)
3 COG5091 SGT1 Suppressor of G2 100.0 1.4E-53 3E-58 385.3 16.1 347 9-412 2-368 (368)
4 PF05002 SGS: SGS domain ; In 100.0 1.4E-41 2.9E-46 258.5 1.3 81 332-412 2-82 (82)
5 KOG3260 Calcyclin-binding prot 99.9 7.2E-24 1.6E-28 180.9 8.0 137 216-384 77-214 (224)
6 cd06488 p23_melusin_like p23_l 99.9 3E-23 6.5E-28 164.0 10.2 87 214-300 1-87 (87)
7 cd00237 p23 p23 binds heat sho 99.9 1E-21 2.2E-26 160.1 10.1 102 215-339 3-105 (106)
8 cd06489 p23_CS_hSgt1_like p23_ 99.9 2.2E-21 4.8E-26 152.5 9.8 84 217-300 1-84 (84)
9 KOG0553 TPR repeat-containing 99.8 1.8E-20 3.9E-25 174.7 13.7 121 1-121 80-200 (304)
10 cd06465 p23_hB-ind1_like p23_l 99.8 3.8E-20 8.2E-25 152.5 9.7 87 215-303 2-90 (108)
11 cd06468 p23_CacyBP p23_like do 99.8 8.8E-19 1.9E-23 140.1 10.5 86 215-300 3-92 (92)
12 cd06466 p23_CS_SGT1_like p23_l 99.8 8.9E-19 1.9E-23 137.5 10.1 84 217-300 1-84 (84)
13 cd06490 p23_NCB5OR p23_like do 99.8 2.2E-18 4.7E-23 136.0 9.9 83 216-300 1-87 (87)
14 KOG0548 Molecular co-chaperone 99.7 4.8E-17 1E-21 161.5 13.8 116 2-117 358-473 (539)
15 KOG3158 HSP90 co-chaperone p23 99.7 1.6E-17 3.4E-22 142.1 5.0 104 216-342 10-115 (180)
16 cd06469 p23_DYX1C1_like p23_li 99.6 8.3E-16 1.8E-20 118.9 9.2 78 218-300 1-78 (78)
17 PF04969 CS: CS domain; Inter 99.6 9.1E-16 2E-20 118.5 9.2 77 214-290 1-79 (79)
18 cd06463 p23_like Proteins cont 99.6 2.2E-15 4.7E-20 117.6 10.3 83 218-300 1-84 (84)
19 KOG0548 Molecular co-chaperone 99.6 1.7E-15 3.6E-20 150.6 11.8 114 1-114 1-114 (539)
20 PRK15359 type III secretion sy 99.6 2E-14 4.2E-19 124.7 16.3 111 4-114 26-136 (144)
21 cd06493 p23_NUDCD1_like p23_NU 99.6 3.4E-15 7.3E-20 117.4 9.8 81 216-299 1-84 (85)
22 KOG4234 TPR repeat-containing 99.6 1.1E-14 2.4E-19 128.5 13.6 122 2-123 95-221 (271)
23 KOG0376 Serine-threonine phosp 99.6 2.7E-16 5.8E-21 155.1 3.1 320 1-412 3-326 (476)
24 KOG0543 FKBP-type peptidyl-pro 99.6 3E-14 6.4E-19 138.4 16.1 116 2-117 208-338 (397)
25 cd06467 p23_NUDC_like p23_like 99.6 6.8E-15 1.5E-19 115.7 9.5 81 216-299 1-84 (85)
26 KOG1667 Zn2+-binding protein M 99.6 9.5E-15 2.1E-19 131.6 9.0 91 212-302 213-304 (320)
27 PRK15363 pathogenicity island 99.5 3.2E-13 6.9E-18 116.6 15.7 112 3-114 36-147 (157)
28 KOG4648 Uncharacterized conser 99.5 3E-14 6.4E-19 134.8 9.5 114 2-115 97-210 (536)
29 TIGR02552 LcrH_SycD type III s 99.5 1.3E-12 2.8E-17 111.2 15.9 113 3-115 18-130 (135)
30 cd06494 p23_NUDCD2_like p23-li 99.5 2.4E-13 5.2E-18 108.1 9.2 81 215-299 7-92 (93)
31 PRK11189 lipoprotein NlpI; Pro 99.4 5.3E-12 1.2E-16 122.5 17.0 108 2-109 64-171 (296)
32 KOG0547 Translocase of outer m 99.4 1.3E-12 2.8E-17 128.7 12.6 111 2-112 115-226 (606)
33 KOG0550 Molecular chaperone (D 99.4 1.8E-12 4E-17 125.4 10.8 115 3-118 250-368 (486)
34 PRK10370 formate-dependent nit 99.4 2.9E-11 6.3E-16 110.4 15.9 109 2-110 73-184 (198)
35 TIGR00990 3a0801s09 mitochondr 99.3 6.8E-11 1.5E-15 126.1 18.5 124 3-126 332-455 (615)
36 TIGR02795 tol_pal_ybgF tol-pal 99.3 7.3E-11 1.6E-15 97.4 14.7 108 2-109 2-115 (119)
37 TIGR00990 3a0801s09 mitochondr 99.3 1E-10 2.2E-15 124.8 18.4 120 2-121 365-484 (615)
38 KOG4626 O-linked N-acetylgluco 99.3 1.5E-11 3.1E-16 124.2 10.7 120 2-121 252-371 (966)
39 cd06492 p23_mNUDC_like p23-lik 99.3 2.2E-11 4.8E-16 95.9 9.6 81 216-299 1-86 (87)
40 KOG0551 Hsp90 co-chaperone CNS 99.3 1.8E-11 3.9E-16 115.7 10.6 109 1-109 80-192 (390)
41 cd06495 p23_NUDCD3_like p23-li 99.3 3.6E-11 7.9E-16 97.1 10.3 89 215-303 6-97 (102)
42 KOG4642 Chaperone-dependent E3 99.3 1.4E-11 2.9E-16 111.8 7.7 114 1-114 9-127 (284)
43 KOG4626 O-linked N-acetylgluco 99.3 2.6E-11 5.6E-16 122.4 10.4 122 3-124 287-408 (966)
44 KOG1126 DNA-binding cell divis 99.2 1.6E-11 3.6E-16 125.1 8.6 127 3-129 422-548 (638)
45 cd00189 TPR Tetratricopeptide 99.2 1.6E-10 3.4E-15 89.1 11.9 99 4-102 2-100 (100)
46 PF13414 TPR_11: TPR repeat; P 99.2 4.1E-11 8.9E-16 89.9 8.3 66 36-101 3-69 (69)
47 KOG0624 dsRNA-activated protei 99.2 9E-11 2E-15 111.5 12.2 105 2-106 38-142 (504)
48 PF13414 TPR_11: TPR repeat; P 99.2 5.3E-11 1.2E-15 89.2 8.4 66 2-67 3-69 (69)
49 PRK15331 chaperone protein Sic 99.2 2.7E-10 5.8E-15 99.0 13.8 109 3-112 38-146 (165)
50 KOG2003 TPR repeat-containing 99.2 3.1E-11 6.8E-16 117.9 8.0 155 2-156 490-644 (840)
51 PRK12370 invasion protein regu 99.2 6.7E-10 1.4E-14 117.0 17.6 93 14-106 316-408 (553)
52 KOG1126 DNA-binding cell divis 99.2 1.6E-10 3.4E-15 118.0 12.1 119 4-122 491-609 (638)
53 KOG0547 Translocase of outer m 99.2 2E-10 4.3E-15 113.5 12.2 106 1-106 325-430 (606)
54 PRK02603 photosystem I assembl 99.2 8.1E-10 1.8E-14 98.5 15.2 110 2-111 35-162 (172)
55 PRK15359 type III secretion sy 99.2 3.8E-10 8.3E-15 97.7 12.2 105 22-129 13-117 (144)
56 TIGR02521 type_IV_pilW type IV 99.2 2E-09 4.4E-14 98.1 17.7 122 2-123 31-154 (234)
57 PRK10370 formate-dependent nit 99.2 1.3E-09 2.8E-14 99.6 15.8 115 15-129 52-169 (198)
58 PRK12370 invasion protein regu 99.1 1.1E-09 2.4E-14 115.4 17.2 126 2-127 338-464 (553)
59 PRK15179 Vi polysaccharide bio 99.1 1.2E-09 2.6E-14 116.7 17.4 122 2-123 86-207 (694)
60 TIGR02552 LcrH_SycD type III s 99.1 7.7E-10 1.7E-14 94.0 13.0 110 23-132 4-113 (135)
61 KOG1155 Anaphase-promoting com 99.1 4.6E-10 1E-14 110.4 12.7 116 8-123 336-451 (559)
62 PF12895 Apc3: Anaphase-promot 99.1 1.3E-10 2.8E-15 90.9 7.1 82 14-96 1-84 (84)
63 PRK09782 bacteriophage N4 rece 99.1 1.4E-09 3.1E-14 120.3 17.2 111 4-114 611-721 (987)
64 TIGR02521 type_IV_pilW type IV 99.1 4.8E-09 1E-13 95.6 17.7 127 3-129 66-194 (234)
65 TIGR03302 OM_YfiO outer membra 99.1 3.3E-09 7.3E-14 99.0 16.1 111 2-112 33-157 (235)
66 KOG1155 Anaphase-promoting com 99.1 2.6E-09 5.7E-14 105.1 15.5 126 4-129 366-491 (559)
67 KOG0545 Aryl-hydrocarbon recep 99.1 3.8E-09 8.1E-14 96.4 14.9 112 3-114 179-309 (329)
68 COG3063 PilF Tfp pilus assembl 99.1 4.5E-09 9.7E-14 95.4 15.0 97 2-98 35-131 (250)
69 PF13429 TPR_15: Tetratricopep 99.1 7.9E-10 1.7E-14 106.2 10.9 126 4-129 148-273 (280)
70 CHL00033 ycf3 photosystem I as 99.1 4.4E-09 9.4E-14 93.3 14.2 103 2-104 35-154 (168)
71 PRK09782 bacteriophage N4 rece 99.0 6.1E-09 1.3E-13 115.4 18.3 117 10-127 584-700 (987)
72 PRK10803 tol-pal system protei 99.0 9E-09 1.9E-13 97.9 16.7 111 3-113 143-260 (263)
73 COG5010 TadD Flp pilus assembl 99.0 6.4E-09 1.4E-13 96.1 14.9 110 5-114 103-212 (257)
74 PRK15174 Vi polysaccharide exp 99.0 8.2E-09 1.8E-13 110.8 18.0 110 8-117 218-331 (656)
75 PRK15174 Vi polysaccharide exp 99.0 9E-09 2E-13 110.5 17.5 130 3-132 247-380 (656)
76 KOG1125 TPR repeat-containing 99.0 8.3E-10 1.8E-14 111.2 8.0 98 5-102 433-530 (579)
77 PF13432 TPR_16: Tetratricopep 99.0 1.4E-09 3.1E-14 80.5 7.2 63 41-103 2-64 (65)
78 KOG2076 RNA polymerase III tra 99.0 1.6E-08 3.5E-13 106.5 17.5 123 2-124 139-261 (895)
79 KOG4555 TPR repeat-containing 99.0 1.1E-08 2.4E-13 84.9 12.8 100 3-102 44-147 (175)
80 cd00298 ACD_sHsps_p23-like Thi 99.0 1.5E-09 3.2E-14 82.8 7.2 73 218-290 1-80 (80)
81 KOG2265 Nuclear distribution p 99.0 3.1E-09 6.6E-14 91.8 9.5 87 214-303 19-109 (179)
82 TIGR03302 OM_YfiO outer membra 99.0 2.5E-08 5.4E-13 93.1 16.1 124 3-126 71-225 (235)
83 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-08 3.3E-13 98.3 14.9 110 15-124 39-152 (296)
84 PF13432 TPR_16: Tetratricopep 99.0 2.8E-09 6E-14 78.9 7.5 65 6-70 1-65 (65)
85 PF13512 TPR_18: Tetratricopep 98.9 2.3E-08 5E-13 85.2 13.6 107 2-108 10-137 (142)
86 COG3063 PilF Tfp pilus assembl 98.9 2.8E-08 6.2E-13 90.2 14.0 112 4-115 71-184 (250)
87 KOG1308 Hsp70-interacting prot 98.9 1.3E-09 2.7E-14 103.9 5.0 113 1-114 113-225 (377)
88 PRK10049 pgaA outer membrane p 98.9 4.6E-08 1E-12 107.0 17.8 113 2-115 49-161 (765)
89 PLN02789 farnesyltranstransfer 98.9 3.7E-08 8.1E-13 96.4 15.4 105 13-117 48-155 (320)
90 TIGR02917 PEP_TPR_lipo putativ 98.9 5E-08 1.1E-12 106.6 18.2 116 3-118 126-241 (899)
91 PRK11447 cellulose synthase su 98.9 4.9E-08 1.1E-12 111.4 17.3 118 7-124 274-405 (1157)
92 PRK15179 Vi polysaccharide bio 98.9 6.8E-08 1.5E-12 103.4 17.1 113 2-114 120-233 (694)
93 KOG0624 dsRNA-activated protei 98.9 7.3E-08 1.6E-12 92.0 15.1 116 4-119 157-272 (504)
94 PRK11788 tetratricopeptide rep 98.9 1.1E-07 2.4E-12 95.1 17.7 108 6-114 184-292 (389)
95 PLN02789 farnesyltranstransfer 98.8 1.2E-07 2.5E-12 92.9 16.6 112 3-114 72-186 (320)
96 PRK11447 cellulose synthase su 98.8 8.4E-08 1.8E-12 109.5 18.0 114 6-119 355-510 (1157)
97 TIGR02917 PEP_TPR_lipo putativ 98.8 8.6E-08 1.9E-12 104.8 17.4 108 6-114 774-881 (899)
98 PF13371 TPR_9: Tetratricopept 98.8 1.6E-08 3.5E-13 76.4 8.3 67 44-110 3-69 (73)
99 KOG4162 Predicted calmodulin-b 98.8 3.8E-08 8.2E-13 102.2 12.2 104 2-105 684-789 (799)
100 PF14559 TPR_19: Tetratricopep 98.8 1.4E-08 3.1E-13 75.6 6.8 67 12-78 1-67 (68)
101 PRK11788 tetratricopeptide rep 98.8 1.8E-07 3.9E-12 93.7 16.8 120 5-124 110-234 (389)
102 PRK15363 pathogenicity island 98.8 8.3E-08 1.8E-12 83.2 12.2 96 30-125 28-124 (157)
103 COG4235 Cytochrome c biogenesi 98.8 1.2E-07 2.6E-12 89.7 14.2 111 2-112 156-269 (287)
104 PF13371 TPR_9: Tetratricopept 98.8 4.5E-08 9.7E-13 74.0 9.3 70 9-78 2-71 (73)
105 COG4783 Putative Zn-dependent 98.8 2.2E-07 4.7E-12 92.6 16.0 132 4-135 308-439 (484)
106 KOG1173 Anaphase-promoting com 98.8 5.5E-08 1.2E-12 98.0 11.4 110 5-114 417-533 (611)
107 PRK10049 pgaA outer membrane p 98.8 1.9E-07 4.1E-12 102.2 16.7 110 4-113 361-470 (765)
108 PF13525 YfiO: Outer membrane 98.7 4.8E-07 1E-11 83.0 16.3 120 2-121 5-144 (203)
109 COG1729 Uncharacterized protei 98.7 3.5E-07 7.6E-12 85.6 15.5 112 2-113 141-258 (262)
110 KOG0550 Molecular chaperone (D 98.7 3.9E-08 8.6E-13 95.8 9.3 123 2-124 203-341 (486)
111 PF13429 TPR_15: Tetratricopep 98.7 1.1E-07 2.5E-12 91.2 11.9 126 7-132 115-242 (280)
112 PF14559 TPR_19: Tetratricopep 98.7 5.6E-08 1.2E-12 72.4 7.1 67 46-112 1-67 (68)
113 PF12688 TPR_5: Tetratrico pep 98.7 5.4E-07 1.2E-11 75.3 13.5 96 3-98 2-103 (120)
114 PLN03088 SGT1, suppressor of 98.7 1.7E-07 3.6E-12 93.4 12.2 82 2-83 36-117 (356)
115 PRK10866 outer membrane biogen 98.7 1.3E-06 2.9E-11 82.3 17.3 121 2-122 32-179 (243)
116 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.1E-07 2.4E-12 94.9 10.0 68 32-99 71-141 (453)
117 PF06552 TOM20_plant: Plant sp 98.7 3.2E-07 6.9E-12 80.7 11.6 97 18-114 7-124 (186)
118 COG5010 TadD Flp pilus assembl 98.6 5.4E-07 1.2E-11 83.4 13.4 117 6-122 70-186 (257)
119 PF09976 TPR_21: Tetratricopep 98.6 3.9E-07 8.4E-12 78.8 11.6 121 2-123 11-137 (145)
120 CHL00033 ycf3 photosystem I as 98.6 4.2E-07 9E-12 80.6 11.8 110 8-117 5-119 (168)
121 KOG3060 Uncharacterized conser 98.6 2E-06 4.4E-11 79.3 16.1 114 6-119 90-203 (289)
122 PRK14574 hmsH outer membrane p 98.6 8.6E-07 1.9E-11 96.7 16.0 121 2-124 34-156 (822)
123 COG4785 NlpI Lipoprotein NlpI, 98.6 2.5E-07 5.5E-12 83.3 8.9 111 2-112 65-175 (297)
124 KOG0543 FKBP-type peptidyl-pro 98.6 4.7E-07 1E-11 88.7 11.3 95 5-99 260-355 (397)
125 cd00189 TPR Tetratricopeptide 98.6 1.3E-06 2.9E-11 66.7 11.8 82 38-119 2-83 (100)
126 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.1E-06 2.3E-11 88.0 13.6 65 2-66 75-142 (453)
127 KOG1310 WD40 repeat protein [G 98.5 1.8E-07 3.8E-12 93.6 7.8 104 2-105 374-480 (758)
128 KOG2002 TPR-containing nuclear 98.5 9.6E-07 2.1E-11 94.0 13.5 116 1-116 306-426 (1018)
129 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.8E-06 6.1E-11 69.7 12.3 94 36-129 2-101 (119)
130 PRK11906 transcriptional regul 98.4 5.9E-06 1.3E-10 82.9 15.6 111 4-114 257-382 (458)
131 PRK10153 DNA-binding transcrip 98.4 6.5E-06 1.4E-10 85.7 16.7 126 3-129 340-478 (517)
132 PRK02603 photosystem I assembl 98.4 4.8E-06 1.1E-10 74.1 13.7 85 34-118 33-120 (172)
133 cd05804 StaR_like StaR_like; a 98.4 2.2E-06 4.7E-11 84.8 12.6 97 5-101 117-217 (355)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.4E-06 5.2E-11 85.5 12.8 97 7-103 205-301 (395)
135 PF13424 TPR_12: Tetratricopep 98.4 2.6E-07 5.7E-12 70.8 4.7 66 34-99 3-75 (78)
136 COG4783 Putative Zn-dependent 98.4 4.9E-06 1.1E-10 83.1 14.7 111 5-115 343-453 (484)
137 PF09976 TPR_21: Tetratricopep 98.4 1.5E-05 3.2E-10 68.9 15.9 93 4-97 50-145 (145)
138 KOG3060 Uncharacterized conser 98.4 8.3E-06 1.8E-10 75.3 14.6 112 6-117 124-238 (289)
139 PRK14720 transcript cleavage f 98.4 5.8E-06 1.2E-10 89.9 15.4 123 3-128 32-173 (906)
140 KOG1128 Uncharacterized conser 98.4 1.1E-06 2.3E-11 91.3 9.2 110 2-111 485-594 (777)
141 KOG0553 TPR repeat-containing 98.4 1.4E-06 3.1E-11 82.2 9.3 96 4-99 117-215 (304)
142 TIGR00540 hemY_coli hemY prote 98.4 2E-05 4.3E-10 80.1 18.3 125 2-126 84-209 (409)
143 KOG1129 TPR repeat-containing 98.4 1E-06 2.2E-11 83.8 7.8 103 12-114 334-439 (478)
144 PRK14574 hmsH outer membrane p 98.4 9E-06 1.9E-10 88.9 16.1 112 5-117 105-216 (822)
145 KOG2076 RNA polymerase III tra 98.3 6.9E-06 1.5E-10 87.1 13.6 99 3-101 174-272 (895)
146 KOG1129 TPR repeat-containing 98.3 1.5E-06 3.2E-11 82.7 7.7 97 5-101 293-389 (478)
147 cd05804 StaR_like StaR_like; a 98.3 1.1E-05 2.4E-10 79.7 14.5 100 3-102 44-180 (355)
148 PRK11906 transcriptional regul 98.3 4.6E-06 1E-10 83.6 11.2 89 16-104 318-406 (458)
149 TIGR00540 hemY_coli hemY prote 98.3 2E-05 4.2E-10 80.1 15.5 122 4-126 265-392 (409)
150 KOG2002 TPR-containing nuclear 98.3 9.1E-06 2E-10 86.8 12.5 114 4-117 272-389 (1018)
151 PRK10153 DNA-binding transcrip 98.2 1.6E-05 3.4E-10 82.9 13.9 89 18-107 400-490 (517)
152 KOG1156 N-terminal acetyltrans 98.2 1.4E-05 3.1E-10 82.1 13.1 117 4-120 9-125 (700)
153 COG4235 Cytochrome c biogenesi 98.2 4.1E-05 8.9E-10 72.7 15.2 100 15-114 135-237 (287)
154 KOG1125 TPR repeat-containing 98.2 8.7E-06 1.9E-10 82.7 11.1 97 5-101 288-384 (579)
155 KOG1173 Anaphase-promoting com 98.2 9.8E-06 2.1E-10 82.1 11.4 111 4-114 314-424 (611)
156 PF13424 TPR_12: Tetratricopep 98.2 3.9E-06 8.4E-11 64.2 6.5 65 2-66 5-76 (78)
157 KOG1174 Anaphase-promoting com 98.2 4.1E-05 9E-10 75.1 14.4 129 3-132 335-499 (564)
158 PRK10747 putative protoheme IX 98.2 0.00011 2.3E-09 74.5 18.0 120 2-122 84-205 (398)
159 KOG1840 Kinesin light chain [C 98.2 4.4E-05 9.5E-10 78.7 14.9 111 4-114 201-332 (508)
160 COG2956 Predicted N-acetylgluc 98.2 5E-05 1.1E-09 72.4 14.1 124 5-128 144-273 (389)
161 PF12569 NARP1: NMDA receptor- 98.2 4.6E-05 9.9E-10 79.2 15.2 69 38-106 196-264 (517)
162 COG2956 Predicted N-acetylgluc 98.1 4.5E-05 9.8E-10 72.8 13.4 109 5-113 110-223 (389)
163 KOG1174 Anaphase-promoting com 98.1 1.6E-05 3.6E-10 77.8 10.4 109 2-110 300-408 (564)
164 COG4700 Uncharacterized protei 98.1 9.4E-05 2E-09 65.5 14.1 101 4-104 91-194 (251)
165 PRK10747 putative protoheme IX 98.1 9E-05 2E-09 75.0 15.9 121 4-128 265-385 (398)
166 KOG1840 Kinesin light chain [C 98.1 5.1E-05 1.1E-09 78.3 13.5 98 2-99 241-354 (508)
167 PRK15331 chaperone protein Sic 98.1 1.8E-05 4E-10 69.0 8.4 94 32-125 33-126 (165)
168 PRK14720 transcript cleavage f 98.1 5.8E-05 1.3E-09 82.3 14.1 112 3-115 117-268 (906)
169 COG4105 ComL DNA uptake lipopr 98.1 0.00022 4.8E-09 66.4 15.9 118 2-119 34-168 (254)
170 PF12895 Apc3: Anaphase-promot 98.0 8.5E-06 1.8E-10 63.4 5.3 58 4-62 27-84 (84)
171 PF03704 BTAD: Bacterial trans 98.0 0.00017 3.7E-09 62.1 13.9 96 3-98 7-124 (146)
172 KOG4234 TPR repeat-containing 98.0 2.6E-05 5.7E-10 69.7 8.7 68 5-72 137-204 (271)
173 PRK10803 tol-pal system protei 98.0 0.00013 2.8E-09 69.5 13.6 99 36-134 142-247 (263)
174 KOG1127 TPR repeat-containing 98.0 2.4E-05 5.2E-10 83.7 9.2 111 4-114 564-674 (1238)
175 KOG4162 Predicted calmodulin-b 98.0 0.00011 2.4E-09 77.1 13.8 118 5-122 653-772 (799)
176 PF12688 TPR_5: Tetratrico pep 98.0 0.00014 3E-09 60.8 11.9 91 37-127 2-98 (120)
177 KOG1128 Uncharacterized conser 98.0 3.4E-05 7.4E-10 80.3 9.4 121 8-129 430-578 (777)
178 KOG2003 TPR repeat-containing 97.9 0.00014 3.1E-09 72.0 13.2 111 3-113 559-703 (840)
179 PF12569 NARP1: NMDA receptor- 97.9 0.00027 5.9E-09 73.4 16.1 96 5-100 197-292 (517)
180 PF13431 TPR_17: Tetratricopep 97.9 9.6E-06 2.1E-10 51.9 3.3 32 59-90 2-33 (34)
181 KOG1156 N-terminal acetyltrans 97.9 9.4E-05 2E-09 76.2 12.1 115 3-117 42-156 (700)
182 PF13428 TPR_14: Tetratricopep 97.9 2.4E-05 5.3E-10 53.1 5.3 42 37-78 2-43 (44)
183 KOG1127 TPR repeat-containing 97.9 0.00013 2.8E-09 78.3 12.8 104 1-104 1-108 (1238)
184 PF13525 YfiO: Outer membrane 97.9 0.00055 1.2E-08 62.7 15.6 110 3-112 43-183 (203)
185 PF00515 TPR_1: Tetratricopept 97.9 2.2E-05 4.7E-10 50.0 4.4 32 71-102 2-33 (34)
186 KOG0495 HAT repeat protein [RN 97.9 0.00021 4.6E-09 73.7 13.6 115 8-122 590-737 (913)
187 PF14938 SNAP: Soluble NSF att 97.9 8.4E-05 1.8E-09 71.6 10.1 101 2-102 114-228 (282)
188 PF07719 TPR_2: Tetratricopept 97.8 4E-05 8.6E-10 48.5 5.1 33 71-103 2-34 (34)
189 KOG0495 HAT repeat protein [RN 97.8 0.00034 7.3E-09 72.4 14.1 111 4-114 653-763 (913)
190 COG4785 NlpI Lipoprotein NlpI, 97.8 9.1E-05 2E-09 67.1 8.9 70 1-70 98-167 (297)
191 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00042 9.2E-09 69.6 14.7 105 12-119 179-283 (395)
192 PRK10866 outer membrane biogen 97.8 0.00098 2.1E-08 62.8 16.5 117 4-120 71-228 (243)
193 PF00515 TPR_1: Tetratricopept 97.8 4.2E-05 9.2E-10 48.6 4.5 33 36-68 1-33 (34)
194 PF13431 TPR_17: Tetratricopep 97.8 3.1E-05 6.7E-10 49.5 3.7 33 24-56 1-33 (34)
195 KOG4340 Uncharacterized conser 97.8 0.00028 6.2E-09 66.8 11.4 86 11-96 19-104 (459)
196 KOG4648 Uncharacterized conser 97.8 5.3E-05 1.2E-09 72.7 6.6 66 39-104 100-165 (536)
197 COG3118 Thioredoxin domain-con 97.7 0.0014 3E-08 62.3 15.4 115 4-118 136-286 (304)
198 PF12968 DUF3856: Domain of Un 97.7 0.0011 2.4E-08 54.4 12.5 94 5-98 12-128 (144)
199 PF04733 Coatomer_E: Coatomer 97.7 0.00023 5E-09 68.9 10.1 115 6-120 135-251 (290)
200 KOG3785 Uncharacterized conser 97.7 0.00038 8.1E-09 67.3 11.1 97 8-104 63-219 (557)
201 PF13428 TPR_14: Tetratricopep 97.7 0.00011 2.5E-09 49.7 5.2 43 70-112 1-43 (44)
202 PF04733 Coatomer_E: Coatomer 97.7 0.0005 1.1E-08 66.5 11.6 102 11-112 174-278 (290)
203 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.9E-09 46.0 5.2 33 37-69 2-34 (34)
204 cd06472 ACD_ScHsp26_like Alpha 97.6 0.00029 6.3E-09 55.9 7.8 76 215-290 1-92 (92)
205 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00039 8.4E-09 49.2 7.4 45 71-115 2-46 (53)
206 KOG0546 HSP90 co-chaperone CPR 97.6 9.7E-05 2.1E-09 71.4 5.2 115 3-117 223-356 (372)
207 KOG3785 Uncharacterized conser 97.6 0.0007 1.5E-08 65.5 10.9 87 10-96 30-117 (557)
208 PF13512 TPR_18: Tetratricopep 97.5 0.00066 1.4E-08 58.1 9.3 72 35-106 9-83 (142)
209 COG0071 IbpA Molecular chapero 97.5 0.00045 9.8E-09 59.9 8.4 80 214-293 41-135 (146)
210 PF14938 SNAP: Soluble NSF att 97.5 0.00029 6.3E-09 67.9 7.9 85 14-98 86-183 (282)
211 PF06552 TOM20_plant: Plant sp 97.5 0.00074 1.6E-08 59.7 9.3 69 2-70 25-114 (186)
212 COG1729 Uncharacterized protei 97.5 0.0019 4.1E-08 60.8 12.3 93 39-131 144-242 (262)
213 KOG2376 Signal recognition par 97.4 0.0038 8.3E-08 64.1 14.8 120 6-128 83-248 (652)
214 PRK10941 hypothetical protein; 97.4 0.0018 3.9E-08 61.8 11.7 79 36-114 181-259 (269)
215 KOG2053 Mitochondrial inherita 97.4 0.0047 1E-07 66.2 15.5 111 3-114 10-120 (932)
216 KOG1130 Predicted G-alpha GTPa 97.4 0.00043 9.3E-09 68.1 6.8 96 3-98 18-123 (639)
217 KOG4340 Uncharacterized conser 97.3 0.00054 1.2E-08 64.9 6.9 93 3-95 145-266 (459)
218 PF15015 NYD-SP12_N: Spermatog 97.3 0.0015 3.2E-08 64.6 9.5 92 5-96 179-288 (569)
219 KOG2376 Signal recognition par 97.3 0.0046 9.9E-08 63.5 13.0 91 3-94 13-103 (652)
220 COG0457 NrfG FOG: TPR repeat [ 97.2 0.019 4.1E-07 50.1 15.8 97 6-102 99-199 (291)
221 KOG2471 TPR repeat-containing 97.2 0.0011 2.5E-08 66.4 8.2 120 3-122 241-387 (696)
222 PF04781 DUF627: Protein of un 97.2 0.004 8.7E-08 50.7 9.4 93 8-100 2-108 (111)
223 cd06471 ACD_LpsHSP_like Group 97.1 0.0019 4.1E-08 51.3 7.3 75 215-290 2-93 (93)
224 KOG1130 Predicted G-alpha GTPa 97.1 0.0012 2.5E-08 65.2 7.0 126 3-128 196-339 (639)
225 KOG0545 Aryl-hydrocarbon recep 97.1 0.002 4.4E-08 59.5 8.0 71 5-75 233-303 (329)
226 cd06464 ACD_sHsps-like Alpha-c 97.1 0.0023 4.9E-08 49.8 7.4 74 217-290 1-88 (88)
227 PF13181 TPR_8: Tetratricopept 97.1 0.00092 2E-08 42.2 4.2 31 71-101 2-32 (34)
228 COG0457 NrfG FOG: TPR repeat [ 97.1 0.014 3.1E-07 50.9 13.5 94 11-104 139-236 (291)
229 COG3071 HemY Uncharacterized e 97.0 0.039 8.4E-07 54.4 16.5 119 2-120 84-203 (400)
230 PF00011 HSP20: Hsp20/alpha cr 97.0 0.0034 7.3E-08 50.6 8.0 77 217-293 1-90 (102)
231 KOG4151 Myosin assembly protei 97.0 0.0026 5.5E-08 67.4 8.5 116 2-117 53-174 (748)
232 KOG3364 Membrane protein invol 97.0 0.014 3.1E-07 49.2 11.1 80 36-115 32-116 (149)
233 PF13181 TPR_8: Tetratricopept 97.0 0.0016 3.4E-08 41.1 4.3 32 37-68 2-33 (34)
234 KOG4379 Uncharacterized conser 96.9 0.0013 2.8E-08 65.0 5.6 85 215-303 291-378 (596)
235 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0045 9.7E-08 43.8 6.6 43 37-79 2-44 (53)
236 KOG4814 Uncharacterized conser 96.8 0.01 2.3E-07 61.5 11.2 96 4-99 356-457 (872)
237 KOG4507 Uncharacterized conser 96.8 0.0054 1.2E-07 63.0 9.0 102 13-114 618-720 (886)
238 PF10300 DUF3808: Protein of u 96.8 0.0078 1.7E-07 62.3 10.4 86 16-101 247-336 (468)
239 COG2976 Uncharacterized protei 96.8 0.031 6.6E-07 50.2 12.4 99 5-104 92-193 (207)
240 KOG3824 Huntingtin interacting 96.8 0.0045 9.8E-08 59.0 7.4 76 5-80 119-194 (472)
241 KOG4642 Chaperone-dependent E3 96.7 0.0021 4.5E-08 59.3 4.9 75 40-114 14-88 (284)
242 PF09613 HrpB1_HrpK: Bacterial 96.7 0.027 5.9E-07 49.1 11.0 110 3-114 11-120 (160)
243 PRK10941 hypothetical protein; 96.7 0.02 4.4E-07 54.6 11.2 76 5-80 184-259 (269)
244 KOG4555 TPR repeat-containing 96.7 0.013 2.7E-07 49.3 8.5 66 38-103 45-110 (175)
245 PF13174 TPR_6: Tetratricopept 96.6 0.0036 7.7E-08 38.9 4.1 31 72-102 2-32 (33)
246 KOG1941 Acetylcholine receptor 96.6 0.0063 1.4E-07 59.3 7.5 95 5-99 125-235 (518)
247 KOG3081 Vesicle coat complex C 96.6 0.054 1.2E-06 50.9 13.1 84 36-119 169-256 (299)
248 COG3071 HemY Uncharacterized e 96.6 0.082 1.8E-06 52.2 14.9 119 7-129 268-386 (400)
249 KOG0551 Hsp90 co-chaperone CNS 96.5 0.03 6.4E-07 54.1 11.3 92 3-114 120-211 (390)
250 PF03704 BTAD: Bacterial trans 96.5 0.023 4.9E-07 48.7 9.8 62 4-65 64-125 (146)
251 smart00028 TPR Tetratricopepti 96.5 0.0043 9.3E-08 37.1 3.6 31 72-102 3-33 (34)
252 KOG0376 Serine-threonine phosp 96.5 0.0021 4.5E-08 64.7 3.2 79 5-83 41-119 (476)
253 PF05843 Suf: Suppressor of fo 96.5 0.06 1.3E-06 51.8 13.2 100 5-104 4-104 (280)
254 PF04184 ST7: ST7 protein; In 96.4 0.024 5.2E-07 57.6 10.4 104 9-114 175-305 (539)
255 KOG3824 Huntingtin interacting 96.3 0.014 3E-07 55.8 7.5 73 39-111 119-191 (472)
256 PRK04841 transcriptional regul 96.3 0.049 1.1E-06 60.9 13.3 94 6-99 456-560 (903)
257 KOG2796 Uncharacterized conser 96.3 0.02 4.4E-07 53.6 8.3 99 6-104 216-320 (366)
258 PF10300 DUF3808: Protein of u 96.3 0.04 8.7E-07 57.0 11.5 93 5-97 270-367 (468)
259 KOG1586 Protein required for f 96.2 0.15 3.2E-06 47.2 13.4 99 5-103 116-228 (288)
260 PF13174 TPR_6: Tetratricopept 96.2 0.0098 2.1E-07 36.8 4.3 31 38-68 2-32 (33)
261 KOG2396 HAT (Half-A-TPR) repea 96.2 0.076 1.6E-06 53.9 12.2 91 20-110 89-180 (568)
262 COG4105 ComL DNA uptake lipopr 96.1 0.045 9.7E-07 51.3 9.9 71 35-105 33-106 (254)
263 PF05843 Suf: Suppressor of fo 96.1 0.11 2.4E-06 50.0 12.9 106 5-110 38-147 (280)
264 smart00028 TPR Tetratricopepti 96.1 0.01 2.2E-07 35.4 3.7 32 37-68 2-33 (34)
265 PF13176 TPR_7: Tetratricopept 96.1 0.013 2.9E-07 37.7 4.4 25 73-97 2-26 (36)
266 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.9E-07 37.6 4.2 29 38-66 1-29 (36)
267 cd06475 ACD_HspB1_like Alpha c 96.0 0.034 7.4E-07 43.5 7.2 72 217-288 4-84 (86)
268 KOG2610 Uncharacterized conser 95.9 0.11 2.5E-06 50.3 11.8 110 5-114 106-219 (491)
269 PRK04841 transcriptional regul 95.9 0.067 1.5E-06 59.8 12.2 96 5-100 494-603 (903)
270 KOG2053 Mitochondrial inherita 95.9 0.073 1.6E-06 57.4 11.5 99 5-104 46-144 (932)
271 cd06479 ACD_HspB7_like Alpha c 95.9 0.041 8.9E-07 42.6 7.3 72 219-290 4-81 (81)
272 PLN03218 maturation of RBCL 1; 95.9 0.35 7.5E-06 55.0 17.5 85 12-97 589-676 (1060)
273 PF09986 DUF2225: Uncharacteri 95.9 0.14 3.1E-06 47.2 12.1 91 14-104 89-199 (214)
274 KOG3081 Vesicle coat complex C 95.8 0.13 2.9E-06 48.4 11.5 94 15-108 186-280 (299)
275 PLN03081 pentatricopeptide (PP 95.7 0.063 1.4E-06 58.4 10.6 122 5-128 429-552 (697)
276 cd06526 metazoan_ACD Alpha-cry 95.7 0.04 8.7E-07 42.7 6.6 68 223-290 7-83 (83)
277 PLN03218 maturation of RBCL 1; 95.7 0.49 1.1E-05 53.9 17.7 90 9-98 656-747 (1060)
278 PF10579 Rapsyn_N: Rapsyn N-te 95.7 0.097 2.1E-06 39.9 8.3 64 2-65 6-72 (80)
279 COG4700 Uncharacterized protei 95.7 0.34 7.3E-06 43.5 12.9 93 4-97 126-220 (251)
280 TIGR02561 HrpB1_HrpK type III 95.7 0.12 2.7E-06 44.4 9.9 84 4-87 12-95 (153)
281 cd06497 ACD_alphaA-crystallin_ 95.7 0.051 1.1E-06 42.5 7.1 72 219-290 6-86 (86)
282 KOG1915 Cell cycle control pro 95.6 0.17 3.7E-06 51.2 12.1 101 5-105 76-176 (677)
283 KOG2471 TPR repeat-containing 95.6 0.02 4.2E-07 57.9 5.4 77 6-82 287-381 (696)
284 KOG1585 Protein required for f 95.5 0.62 1.3E-05 43.5 14.4 116 2-117 31-160 (308)
285 PF10602 RPN7: 26S proteasome 95.4 0.23 4.9E-06 44.4 11.3 95 3-97 37-140 (177)
286 cd06498 ACD_alphaB-crystallin_ 95.4 0.08 1.7E-06 41.2 7.3 71 221-291 5-84 (84)
287 PF14561 TPR_20: Tetratricopep 95.4 0.21 4.5E-06 39.4 9.6 45 57-101 9-53 (90)
288 PF14561 TPR_20: Tetratricopep 95.3 0.17 3.7E-06 39.9 9.1 49 21-69 7-55 (90)
289 COG2912 Uncharacterized conser 95.2 0.15 3.3E-06 48.2 9.8 78 37-114 182-259 (269)
290 KOG2796 Uncharacterized conser 95.2 0.38 8.2E-06 45.4 12.1 109 6-114 181-296 (366)
291 PLN03081 pentatricopeptide (PP 95.0 0.34 7.4E-06 52.7 13.5 97 5-103 394-494 (697)
292 cd06478 ACD_HspB4-5-6 Alpha-cr 95.0 0.11 2.4E-06 40.3 7.0 71 220-290 4-83 (83)
293 PLN03077 Protein ECB2; Provisi 94.9 0.29 6.4E-06 54.6 12.9 115 8-125 595-712 (857)
294 COG4976 Predicted methyltransf 94.9 0.04 8.6E-07 50.7 4.7 59 11-69 4-62 (287)
295 cd06470 ACD_IbpA-B_like Alpha- 94.8 0.18 4E-06 39.6 7.9 72 216-289 3-89 (90)
296 COG4976 Predicted methyltransf 94.7 0.055 1.2E-06 49.8 5.2 61 45-105 4-64 (287)
297 KOG1585 Protein required for f 94.5 0.26 5.6E-06 45.9 9.0 91 8-98 116-218 (308)
298 KOG1070 rRNA processing protei 94.5 0.69 1.5E-05 52.5 13.7 107 8-114 1536-1644(1710)
299 PLN03077 Protein ECB2; Provisi 94.4 0.89 1.9E-05 50.8 15.1 105 5-111 557-665 (857)
300 PF12862 Apc5: Anaphase-promot 94.3 0.26 5.6E-06 39.1 7.8 58 10-67 6-72 (94)
301 KOG1308 Hsp70-interacting prot 94.3 0.041 9E-07 53.4 3.6 66 3-68 149-214 (377)
302 PRK10743 heat shock protein Ib 94.3 0.27 5.9E-06 42.0 8.3 75 215-291 36-124 (137)
303 KOG1586 Protein required for f 94.2 2 4.2E-05 40.0 14.0 97 5-102 37-146 (288)
304 PF04184 ST7: ST7 protein; In 94.2 0.53 1.1E-05 48.2 11.2 58 39-96 262-321 (539)
305 PF13374 TPR_10: Tetratricopep 94.0 0.13 2.8E-06 33.4 4.7 29 37-65 3-31 (42)
306 KOG2610 Uncharacterized conser 94.0 0.32 6.9E-06 47.3 8.8 87 9-95 144-234 (491)
307 PF07079 DUF1347: Protein of u 94.0 1.2 2.6E-05 45.1 13.0 92 4-96 381-521 (549)
308 COG2912 Uncharacterized conser 93.8 0.28 6E-06 46.5 8.1 73 8-80 187-259 (269)
309 cd06476 ACD_HspB2_like Alpha c 93.8 0.32 7E-06 37.7 7.2 70 221-290 5-83 (83)
310 PF04910 Tcf25: Transcriptiona 93.7 2.8 6.1E-05 41.9 15.4 82 29-110 33-144 (360)
311 KOG3364 Membrane protein invol 93.5 0.83 1.8E-05 38.7 9.4 74 5-78 35-113 (149)
312 KOG0530 Protein farnesyltransf 93.3 2.4 5.3E-05 40.0 13.2 102 13-114 54-157 (318)
313 cd06481 ACD_HspB9_like Alpha c 93.3 0.36 7.7E-06 37.8 6.7 68 221-288 5-85 (87)
314 KOG1915 Cell cycle control pro 93.3 1.4 3E-05 44.9 12.2 106 13-119 377-486 (677)
315 KOG1941 Acetylcholine receptor 93.2 0.53 1.2E-05 46.3 9.0 94 6-99 166-275 (518)
316 PF13374 TPR_10: Tetratricopep 92.9 0.25 5.3E-06 32.0 4.6 29 71-99 3-31 (42)
317 PRK11597 heat shock chaperone 92.9 0.54 1.2E-05 40.4 7.8 74 216-291 35-122 (142)
318 PF13281 DUF4071: Domain of un 92.9 2.7 5.9E-05 42.0 13.8 63 6-68 183-258 (374)
319 PF02259 FAT: FAT domain; Int 92.9 1.5 3.2E-05 43.0 12.1 35 71-105 253-293 (352)
320 PRK13184 pknD serine/threonine 92.8 0.62 1.3E-05 51.9 10.0 102 9-111 482-593 (932)
321 COG3629 DnrI DNA-binding trans 92.7 1.8 3.9E-05 41.5 11.8 64 36-99 153-216 (280)
322 PF08631 SPO22: Meiosis protei 92.7 4.3 9.4E-05 38.9 14.7 113 2-114 35-166 (278)
323 COG5191 Uncharacterized conser 92.5 0.28 6.1E-06 47.2 5.9 90 25-114 96-186 (435)
324 PF02259 FAT: FAT domain; Int 92.4 3.1 6.7E-05 40.6 13.7 63 2-64 146-212 (352)
325 cd06482 ACD_HspB10 Alpha cryst 92.4 0.59 1.3E-05 36.6 6.7 66 221-286 6-83 (87)
326 KOG1070 rRNA processing protei 92.1 4.2 9E-05 46.6 15.0 107 4-110 1566-1674(1710)
327 COG0790 FOG: TPR repeat, SEL1 92.1 4.5 9.7E-05 38.7 14.1 95 5-101 112-222 (292)
328 COG3914 Spy Predicted O-linked 92.0 1.3 2.9E-05 46.1 10.5 101 10-110 75-182 (620)
329 KOG1550 Extracellular protein 91.8 4.1 8.9E-05 43.2 14.5 91 6-100 292-394 (552)
330 KOG1550 Extracellular protein 91.7 2.3 5E-05 45.0 12.4 104 5-114 247-370 (552)
331 PF08190 PIH1: pre-RNA process 91.4 0.9 1.9E-05 44.5 8.6 65 221-288 259-326 (328)
332 KOG4814 Uncharacterized conser 91.2 1.9 4.1E-05 45.4 10.6 76 37-112 355-436 (872)
333 PF10516 SHNi-TPR: SHNi-TPR; 91.1 0.39 8.5E-06 31.3 3.7 28 38-65 3-30 (38)
334 PF08424 NRDE-2: NRDE-2, neces 91.0 9.9 0.00022 37.3 15.3 88 23-110 6-105 (321)
335 COG3898 Uncharacterized membra 90.9 5.6 0.00012 39.8 13.0 126 6-135 267-394 (531)
336 COG3898 Uncharacterized membra 90.8 6 0.00013 39.5 13.2 97 11-109 197-301 (531)
337 PF12862 Apc5: Anaphase-promot 90.8 1.7 3.7E-05 34.3 8.0 57 45-101 7-72 (94)
338 PF14863 Alkyl_sulf_dimr: Alky 90.6 1 2.2E-05 38.7 6.9 51 36-86 70-120 (141)
339 PF07079 DUF1347: Protein of u 90.5 1.5 3.2E-05 44.5 8.8 56 5-61 465-520 (549)
340 KOG4507 Uncharacterized conser 90.4 1 2.2E-05 46.9 7.8 73 5-77 645-717 (886)
341 KOG3617 WD40 and TPR repeat-co 90.4 2.2 4.7E-05 46.3 10.4 95 4-98 860-995 (1416)
342 PF09613 HrpB1_HrpK: Bacterial 90.1 5.1 0.00011 35.1 10.9 80 36-115 10-89 (160)
343 cd06477 ACD_HspB3_Like Alpha c 90.0 2 4.4E-05 33.3 7.6 67 220-286 4-79 (83)
344 COG2976 Uncharacterized protei 89.7 5.8 0.00013 35.9 11.1 75 22-96 72-152 (207)
345 PF07720 TPR_3: Tetratricopept 89.5 1.2 2.7E-05 28.6 5.0 30 72-101 3-34 (36)
346 cd02682 MIT_AAA_Arch MIT: doma 89.3 1.6 3.5E-05 33.1 6.3 31 1-31 5-35 (75)
347 PF10516 SHNi-TPR: SHNi-TPR; 89.3 0.63 1.4E-05 30.4 3.5 29 71-99 2-30 (38)
348 PF10373 EST1_DNA_bind: Est1 D 89.3 1.2 2.5E-05 42.3 7.1 62 21-82 1-62 (278)
349 PRK15180 Vi polysaccharide bio 88.8 4.9 0.00011 41.1 11.0 97 9-105 296-392 (831)
350 PF13281 DUF4071: Domain of un 88.7 5.4 0.00012 39.9 11.3 92 11-102 150-258 (374)
351 PF07721 TPR_4: Tetratricopept 88.6 0.56 1.2E-05 27.6 2.8 23 72-94 3-25 (26)
352 PF10373 EST1_DNA_bind: Est1 D 88.5 1.5 3.2E-05 41.5 7.2 60 55-114 1-60 (278)
353 KOG0546 HSP90 co-chaperone CPR 88.4 0.3 6.5E-06 47.7 2.3 80 7-86 280-359 (372)
354 PF07720 TPR_3: Tetratricopept 88.3 1.7 3.8E-05 27.9 5.1 32 37-68 2-35 (36)
355 PF10602 RPN7: 26S proteasome 87.4 6.2 0.00013 35.2 10.0 65 36-100 36-103 (177)
356 PF08631 SPO22: Meiosis protei 87.1 13 0.00029 35.5 12.9 97 11-107 2-124 (278)
357 PF10255 Paf67: RNA polymerase 87.0 1.1 2.3E-05 45.3 5.3 60 38-98 124-192 (404)
358 PF12968 DUF3856: Domain of Un 86.9 5.4 0.00012 33.2 8.3 78 37-114 8-104 (144)
359 PRK13184 pknD serine/threonine 86.8 3.7 8.1E-05 46.0 9.8 89 16-105 533-626 (932)
360 KOG2561 Adaptor protein NUB1, 86.8 2.6 5.7E-05 42.5 7.7 98 1-98 162-295 (568)
361 PF09670 Cas_Cas02710: CRISPR- 86.7 13 0.00029 37.3 13.1 63 3-65 132-198 (379)
362 PF08424 NRDE-2: NRDE-2, neces 86.6 11 0.00025 36.9 12.3 82 18-99 47-131 (321)
363 PF04910 Tcf25: Transcriptiona 86.5 8.4 0.00018 38.5 11.4 98 4-101 105-224 (360)
364 COG3914 Spy Predicted O-linked 86.3 12 0.00026 39.3 12.4 96 15-110 43-142 (620)
365 KOG2422 Uncharacterized conser 86.3 14 0.0003 38.8 12.7 115 15-132 251-402 (665)
366 COG0790 FOG: TPR repeat, SEL1 86.3 10 0.00023 36.1 11.7 81 18-103 171-270 (292)
367 PF09986 DUF2225: Uncharacteri 86.2 3.4 7.4E-05 38.1 7.9 62 18-79 141-209 (214)
368 KOG2300 Uncharacterized conser 86.0 11 0.00024 38.7 11.6 94 4-100 369-475 (629)
369 COG3118 Thioredoxin domain-con 85.9 13 0.00028 35.8 11.6 60 36-95 134-193 (304)
370 KOG2047 mRNA splicing factor [ 85.7 15 0.00033 39.0 12.8 115 2-117 425-558 (835)
371 KOG2047 mRNA splicing factor [ 85.6 16 0.00034 39.0 12.8 94 9-102 484-582 (835)
372 PF06957 COPI_C: Coatomer (COP 85.3 4.2 9E-05 41.3 8.5 104 4-107 206-337 (422)
373 PF07721 TPR_4: Tetratricopept 84.8 1.2 2.6E-05 26.1 2.8 24 37-60 2-25 (26)
374 PF10579 Rapsyn_N: Rapsyn N-te 84.8 7 0.00015 29.9 7.5 59 38-96 8-69 (80)
375 PF04781 DUF627: Protein of un 84.6 6 0.00013 32.4 7.5 69 42-110 2-84 (111)
376 COG5191 Uncharacterized conser 84.3 2 4.2E-05 41.6 5.3 69 7-75 112-181 (435)
377 KOG0530 Protein farnesyltransf 84.3 12 0.00027 35.5 10.4 90 15-104 91-181 (318)
378 KOG2396 HAT (Half-A-TPR) repea 84.1 7.6 0.00016 40.0 9.6 64 11-74 113-178 (568)
379 COG3629 DnrI DNA-binding trans 83.9 6.7 0.00015 37.6 8.9 62 4-65 155-216 (280)
380 PF10345 Cohesin_load: Cohesin 83.3 42 0.00092 36.0 15.8 108 3-111 60-182 (608)
381 PF10255 Paf67: RNA polymerase 82.9 5.1 0.00011 40.5 8.0 105 7-112 127-243 (404)
382 PF05455 GvpH: GvpH; InterPro 82.9 7.8 0.00017 34.4 8.1 74 217-293 95-170 (177)
383 PF14863 Alkyl_sulf_dimr: Alky 82.7 4.4 9.5E-05 34.8 6.4 58 69-126 69-126 (141)
384 cd06480 ACD_HspB8_like Alpha-c 82.3 8.4 0.00018 30.4 7.4 66 222-287 14-88 (91)
385 COG3947 Response regulator con 82.3 5.5 0.00012 38.3 7.4 58 38-95 281-338 (361)
386 PF11817 Foie-gras_1: Foie gra 82.2 9.6 0.00021 35.8 9.3 56 38-93 180-241 (247)
387 TIGR02561 HrpB1_HrpK type III 82.1 18 0.00039 31.3 9.8 81 37-117 11-91 (153)
388 KOG1839 Uncharacterized protei 82.0 2.7 5.8E-05 47.7 6.0 98 2-99 932-1044(1236)
389 cd02683 MIT_1 MIT: domain cont 81.5 4.1 8.8E-05 31.1 5.2 30 2-31 6-35 (77)
390 COG4941 Predicted RNA polymera 81.4 10 0.00022 37.2 8.9 99 15-114 309-409 (415)
391 COG4455 ImpE Protein of avirul 81.0 7.1 0.00015 36.1 7.4 60 45-104 10-69 (273)
392 PF11207 DUF2989: Protein of u 80.9 6.8 0.00015 35.6 7.3 72 17-90 121-198 (203)
393 cd02681 MIT_calpain7_1 MIT: do 80.8 2.9 6.3E-05 31.8 4.2 30 2-31 6-35 (76)
394 KOG1839 Uncharacterized protei 80.6 4.4 9.6E-05 46.1 7.1 100 1-100 972-1087(1236)
395 KOG0529 Protein geranylgeranyl 80.2 26 0.00057 35.3 11.6 103 12-114 85-193 (421)
396 PF04212 MIT: MIT (microtubule 80.2 4.1 8.9E-05 30.0 4.8 30 2-31 5-34 (69)
397 KOG2114 Vacuolar assembly/sort 79.6 5 0.00011 43.6 6.8 30 2-31 368-397 (933)
398 PF11207 DUF2989: Protein of u 79.2 9.6 0.00021 34.7 7.6 75 51-126 121-200 (203)
399 COG4649 Uncharacterized protei 78.5 49 0.0011 29.6 11.5 93 6-98 98-195 (221)
400 smart00386 HAT HAT (Half-A-TPR 77.7 5.8 0.00013 23.5 4.3 29 16-44 1-29 (33)
401 PF10952 DUF2753: Protein of u 77.7 13 0.00028 31.1 7.3 103 3-112 2-124 (140)
402 KOG0529 Protein geranylgeranyl 77.6 53 0.0011 33.2 12.8 106 10-115 36-156 (421)
403 cd02678 MIT_VPS4 MIT: domain c 77.5 7.6 0.00016 29.3 5.6 30 2-31 6-35 (75)
404 TIGR03504 FimV_Cterm FimV C-te 77.5 9.6 0.00021 25.7 5.4 25 74-98 3-27 (44)
405 KOG0686 COP9 signalosome, subu 77.4 16 0.00035 36.7 9.1 94 4-97 152-256 (466)
406 cd02680 MIT_calpain7_2 MIT: do 77.1 4.3 9.3E-05 30.8 4.0 30 2-31 6-35 (75)
407 PHA02537 M terminase endonucle 76.9 38 0.00083 31.5 11.1 105 12-117 93-224 (230)
408 PF11817 Foie-gras_1: Foie gra 76.7 10 0.00022 35.6 7.6 58 6-63 182-245 (247)
409 KOG4563 Cell cycle-regulated h 75.9 6.1 0.00013 39.0 5.7 65 3-93 42-106 (400)
410 smart00745 MIT Microtubule Int 75.6 9.7 0.00021 28.6 5.8 30 2-31 8-37 (77)
411 PF04053 Coatomer_WDAD: Coatom 75.3 22 0.00048 36.5 10.1 89 8-97 267-374 (443)
412 KOG2300 Uncharacterized conser 75.1 39 0.00084 34.9 11.2 93 3-95 47-152 (629)
413 KOG2581 26S proteasome regulat 74.8 39 0.00085 34.1 11.0 68 37-104 210-281 (493)
414 KOG1310 WD40 repeat protein [G 74.8 12 0.00026 38.9 7.6 82 38-119 376-460 (758)
415 cd02656 MIT MIT: domain contai 74.4 10 0.00022 28.4 5.7 30 2-31 6-35 (75)
416 KOG3807 Predicted membrane pro 74.4 52 0.0011 32.4 11.5 92 8-101 190-306 (556)
417 KOG0985 Vesicle coat protein c 74.0 15 0.00032 41.2 8.4 102 5-114 1197-1323(1666)
418 TIGR02710 CRISPR-associated pr 73.8 56 0.0012 32.9 12.1 57 5-61 133-196 (380)
419 PRK15180 Vi polysaccharide bio 73.5 8.4 0.00018 39.5 6.2 96 8-103 329-424 (831)
420 PF09205 DUF1955: Domain of un 73.0 23 0.0005 30.2 7.7 32 67-98 117-148 (161)
421 COG4455 ImpE Protein of avirul 72.9 30 0.00066 32.1 9.0 62 8-69 7-68 (273)
422 cd02682 MIT_AAA_Arch MIT: doma 72.7 14 0.0003 28.0 5.8 11 95-105 38-48 (75)
423 KOG1914 mRNA cleavage and poly 72.4 19 0.0004 37.6 8.4 72 26-98 10-81 (656)
424 cd02684 MIT_2 MIT: domain cont 72.1 12 0.00026 28.3 5.5 30 2-31 6-35 (75)
425 KOG1258 mRNA processing protei 71.8 1.2E+02 0.0026 32.1 14.2 106 9-114 373-485 (577)
426 KOG3783 Uncharacterized conser 70.9 32 0.00069 35.9 9.7 67 37-103 450-524 (546)
427 KOG0292 Vesicle coat complex C 70.7 42 0.00092 37.1 10.8 107 4-110 993-1124(1202)
428 PF15015 NYD-SP12_N: Spermatog 70.4 10 0.00022 38.4 5.8 57 8-64 234-290 (569)
429 PF11846 DUF3366: Domain of un 70.3 27 0.00058 31.3 8.4 51 51-102 126-176 (193)
430 COG3947 Response regulator con 70.0 15 0.00033 35.4 6.8 58 5-62 282-339 (361)
431 TIGR03504 FimV_Cterm FimV C-te 68.6 9.4 0.0002 25.7 3.7 26 40-65 3-28 (44)
432 COG2909 MalT ATP-dependent tra 68.5 49 0.0011 36.6 10.9 94 2-95 458-564 (894)
433 PF04053 Coatomer_WDAD: Coatom 68.3 17 0.00037 37.4 7.3 59 33-91 344-410 (443)
434 PF07219 HemY_N: HemY protein 68.2 24 0.00053 28.5 6.9 42 43-84 66-107 (108)
435 KOG2041 WD40 repeat protein [G 68.0 22 0.00049 38.2 8.0 81 3-95 797-877 (1189)
436 KOG1258 mRNA processing protei 67.4 1.6E+02 0.0034 31.3 14.0 100 7-106 302-402 (577)
437 PRK15490 Vi polysaccharide bio 65.1 1.1E+02 0.0024 32.5 12.6 79 14-94 20-98 (578)
438 cd02677 MIT_SNX15 MIT: domain 63.6 14 0.00029 28.1 4.2 29 3-31 7-35 (75)
439 PF10345 Cohesin_load: Cohesin 62.7 94 0.002 33.4 12.0 89 6-94 305-428 (608)
440 KOG3617 WD40 and TPR repeat-co 62.3 38 0.00083 37.3 8.5 78 9-96 807-884 (1416)
441 PF12739 TRAPPC-Trs85: ER-Golg 62.0 78 0.0017 32.2 10.8 96 4-99 210-329 (414)
442 COG5159 RPN6 26S proteasome re 61.7 1E+02 0.0022 29.9 10.4 93 6-98 7-153 (421)
443 cd02680 MIT_calpain7_2 MIT: do 59.0 21 0.00046 27.0 4.5 17 49-65 19-35 (75)
444 smart00386 HAT HAT (Half-A-TPR 58.8 29 0.00062 20.3 4.5 27 51-77 2-28 (33)
445 COG2015 Alkyl sulfatase and re 58.1 24 0.00051 36.4 5.9 53 37-89 453-505 (655)
446 PF13226 DUF4034: Domain of un 56.9 55 0.0012 31.4 8.0 66 21-86 62-149 (277)
447 COG2909 MalT ATP-dependent tra 56.4 1.7E+02 0.0037 32.6 12.3 94 7-100 420-527 (894)
448 KOG2422 Uncharacterized conser 56.4 93 0.002 32.9 9.9 96 6-101 346-450 (665)
449 KOG1914 mRNA cleavage and poly 56.3 1.8E+02 0.0039 30.7 11.8 92 10-101 409-503 (656)
450 COG3014 Uncharacterized protei 56.0 1.2E+02 0.0026 30.1 10.0 60 6-65 62-154 (449)
451 KOG2581 26S proteasome regulat 55.9 1.4E+02 0.003 30.3 10.7 60 10-69 217-280 (493)
452 KOG4563 Cell cycle-regulated h 54.1 21 0.00045 35.4 4.7 48 37-84 42-90 (400)
453 COG5107 RNA14 Pre-mRNA 3'-end 54.0 2.4E+02 0.0052 29.2 12.1 96 10-105 440-537 (660)
454 KOG0276 Vesicle coat complex C 53.8 60 0.0013 34.5 8.1 67 25-100 630-696 (794)
455 KOG3783 Uncharacterized conser 53.8 63 0.0014 33.7 8.3 91 21-111 252-344 (546)
456 PF14098 SSPI: Small, acid-sol 53.7 15 0.00033 26.9 2.8 27 355-381 37-63 (65)
457 KOG1464 COP9 signalosome, subu 53.0 36 0.00078 32.6 5.9 50 49-98 40-93 (440)
458 cd02679 MIT_spastin MIT: domai 52.5 27 0.00058 26.8 4.2 13 18-30 5-17 (79)
459 PF02064 MAS20: MAS20 protein 52.1 36 0.00079 28.4 5.2 32 6-37 67-98 (121)
460 PF00244 14-3-3: 14-3-3 protei 52.1 99 0.0022 28.8 8.9 96 3-98 2-197 (236)
461 KOG0687 26S proteasome regulat 51.7 1.7E+02 0.0037 28.9 10.3 96 3-98 105-209 (393)
462 PF10938 YfdX: YfdX protein; 51.0 1.3E+02 0.0028 26.2 8.8 97 2-98 2-145 (155)
463 PF09477 Type_III_YscG: Bacter 50.9 1.4E+02 0.003 24.5 9.0 85 5-95 9-94 (116)
464 PF12854 PPR_1: PPR repeat 48.9 45 0.00098 20.7 4.2 26 36-61 7-32 (34)
465 cd02677 MIT_SNX15 MIT: domain 48.7 26 0.00057 26.5 3.6 15 84-98 20-34 (75)
466 KOG0276 Vesicle coat complex C 48.3 84 0.0018 33.5 8.2 81 10-95 645-746 (794)
467 PF04212 MIT: MIT (microtubule 47.9 46 0.00099 24.3 4.8 7 95-101 37-43 (69)
468 PF09797 NatB_MDM20: N-acetylt 47.9 1.1E+02 0.0025 30.2 9.2 46 50-95 197-242 (365)
469 PF04190 DUF410: Protein of un 46.7 2.3E+02 0.005 26.8 10.6 91 5-95 13-115 (260)
470 KOG0985 Vesicle coat protein c 46.5 3.1E+02 0.0066 31.5 12.2 87 8-99 1054-1162(1666)
471 TIGR03092 SASP_sspI small, aci 46.3 21 0.00046 26.1 2.6 26 355-380 36-61 (65)
472 PF08238 Sel1: Sel1 repeat; I 46.1 47 0.001 20.6 4.1 13 86-98 24-36 (39)
473 KOG4459 Membrane-associated pr 45.9 40 0.00086 34.4 5.3 113 4-117 33-180 (471)
474 COG4856 Uncharacterized protei 45.7 53 0.0012 32.7 6.0 75 219-294 64-138 (403)
475 PF03745 DUF309: Domain of unk 45.2 1.2E+02 0.0025 22.0 6.7 53 6-58 3-61 (62)
476 PF11846 DUF3366: Domain of un 44.7 92 0.002 27.7 7.2 48 19-67 128-175 (193)
477 PF09205 DUF1955: Domain of un 44.5 2E+02 0.0043 24.7 8.4 25 8-32 8-32 (161)
478 KOG0739 AAA+-type ATPase [Post 43.1 1.3E+02 0.0027 29.5 7.9 14 19-32 8-21 (439)
479 PF13226 DUF4034: Domain of un 42.4 3.2E+02 0.0069 26.3 11.1 107 8-114 6-143 (277)
480 cd02683 MIT_1 MIT: domain cont 42.2 1.5E+02 0.0032 22.4 7.7 29 76-104 12-47 (77)
481 cd02681 MIT_calpain7_1 MIT: do 41.7 57 0.0012 24.8 4.5 25 73-97 9-33 (76)
482 KOG1497 COP9 signalosome, subu 41.5 3.6E+02 0.0078 26.6 11.9 90 6-96 107-210 (399)
483 COG4941 Predicted RNA polymera 41.2 1.7E+02 0.0037 29.0 8.6 72 8-79 335-408 (415)
484 KOG1497 COP9 signalosome, subu 40.9 3.7E+02 0.008 26.6 14.7 79 36-115 103-191 (399)
485 smart00671 SEL1 Sel1-like repe 40.8 58 0.0013 19.7 3.9 14 51-64 20-33 (36)
486 KOG0889 Histone acetyltransfer 40.7 2.6E+02 0.0056 36.2 11.7 66 36-101 2812-2885(3550)
487 PRK02955 small acid-soluble sp 40.6 25 0.00053 26.0 2.2 26 355-380 39-64 (68)
488 PF01535 PPR: PPR repeat; Int 40.5 47 0.001 19.2 3.3 22 76-97 6-27 (31)
489 PF01239 PPTA: Protein prenylt 40.1 83 0.0018 18.9 4.8 27 22-48 3-29 (31)
490 PF07219 HemY_N: HemY protein 39.8 1.4E+02 0.003 24.1 6.9 28 72-99 61-88 (108)
491 PF05053 Menin: Menin; InterP 39.6 1.3E+02 0.0029 31.7 8.1 45 54-98 297-346 (618)
492 PF07163 Pex26: Pex26 protein; 39.6 2E+02 0.0044 27.7 8.7 103 5-108 38-155 (309)
493 KOG1538 Uncharacterized conser 39.5 78 0.0017 34.0 6.4 91 6-96 707-830 (1081)
494 smart00299 CLH Clathrin heavy 39.4 2.2E+02 0.0047 23.5 9.1 80 13-94 18-106 (140)
495 PF15469 Sec5: Exocyst complex 39.1 2.6E+02 0.0057 24.6 9.2 20 47-66 97-116 (182)
496 COG5187 RPN7 26S proteasome re 38.8 3E+02 0.0064 26.9 9.6 83 19-101 92-186 (412)
497 cd00280 TRFH Telomeric Repeat 38.5 3E+02 0.0066 24.9 13.2 108 2-110 13-150 (200)
498 PF08158 NUC130_3NT: NUC130/3N 38.2 45 0.00097 23.4 3.2 27 354-380 18-44 (52)
499 KOG2758 Translation initiation 38.1 1.2E+02 0.0026 29.8 7.0 66 33-98 126-195 (432)
500 PF09797 NatB_MDM20: N-acetylt 37.9 1E+02 0.0022 30.7 7.0 46 16-61 197-242 (365)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=5.4e-88 Score=668.85 Aligned_cols=356 Identities=72% Similarity=1.103 Sum_probs=300.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
||..+..+|+.+|..|+|++|+.+|++||+++|+++.+|++||.+|+++|+|++|+.++++|+.++|.++.+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhhcccc
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEE 160 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 160 (414)
+.+|+|++|+.+|++++.++|++..+..|+.+|...+..... .....
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~---------------------------------~~~~~ 127 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEK---------------------------------DLVQP 127 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhc---------------------------------ccccc
Confidence 999999999999999999999999999999999833311000 00000
Q ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCCCCCCCccccccCCCeEEEEEEeCCCCCCceE
Q 015029 161 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240 (414)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~ 240 (414)
. ...++ .. ....+.+. . ...+..++..+++||||||++++|+|+||+++++++++.
T Consensus 128 -----~-~~~~~--~~---~~~~~~~~------------~-~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~ 183 (356)
T PLN03088 128 -----V-PSDLP--SS---VTAPPVEE------------A-DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVN 183 (356)
T ss_pred -----c-ccccc--cc---cccccccc------------c-ccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcE
Confidence 0 00000 00 00000000 0 011122334568999999999999999999999999999
Q ss_pred EEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCCccccCCCccCCcccCCCCCCCCC
Q 015029 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSP 320 (414)
Q Consensus 241 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~ 320 (414)
|+|++++|+|+|..+++..|.|.++||++|+|+.|+|+|+++||||+|+|+++.+|++|+..+..........+. ....
T Consensus 184 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~ 262 (356)
T PLN03088 184 VDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQ 262 (356)
T ss_pred EEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecCCCCCccccccCCccccccCCCCCc-Cccc
Confidence 999999999999888888999999999999999999999999999999999999999999875433222111111 1245
Q ss_pred CCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccCcccc
Q 015029 321 RPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 400 (414)
Q Consensus 321 ~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~~~~~ 400 (414)
.|+||||+++++|||||+.++++|+++|+++|+++||+||||||+||||||||||||||+|||||||||||+|||+++||
T Consensus 263 ~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e 342 (356)
T PLN03088 263 RPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIE 342 (356)
T ss_pred CCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccc
Confidence 68999998878999999999888888888899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccCC
Q 015029 401 GSPPDGMEMKKWEY 414 (414)
Q Consensus 401 ~~~p~g~e~k~~~~ 414 (414)
++||+|||+|||++
T Consensus 343 ~~pp~g~e~k~~~~ 356 (356)
T PLN03088 343 GSPPDGMELKKWEY 356 (356)
T ss_pred cCCCCCCccccCCC
Confidence 99999999999985
No 2
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-69 Score=458.39 Aligned_cols=195 Identities=59% Similarity=0.944 Sum_probs=175.6
Q ss_pred CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029 212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 291 (414)
Q Consensus 212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 291 (414)
+++||||||+.+.|+|+||.++|+.++|.|.|+++.|++.+..++|..|.|.++|||+|+|+.|+|+++++||||+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHH
Q 015029 292 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT 371 (414)
Q Consensus 292 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~ 371 (414)
+..+|..|++.....+...... +....+||+|+. ++|||+++.+.+++|++++.+ +++||+|||+||.+|||||
T Consensus 82 ~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv 155 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV 155 (196)
T ss_pred cchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence 8899999996432221111111 122348999977 889999999988888888777 8999999999999999999
Q ss_pred HHHHHhhhhhcCCeeeecCcccccCcccccCCCCCcccccc
Q 015029 372 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412 (414)
Q Consensus 372 kram~KS~~eS~gt~lstnw~~v~~~~~~~~~p~g~e~k~~ 412 (414)
||||||||+|||||||||||+|||+++||++||+|||+|||
T Consensus 156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~ 196 (196)
T KOG1309|consen 156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW 196 (196)
T ss_pred HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence 99999999999999999999999999999999999999999
No 3
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=100.00 E-value=1.4e-53 Score=385.32 Aligned_cols=347 Identities=24% Similarity=0.351 Sum_probs=248.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCC------CHHH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPS------MSKA 72 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----------~~~~~Al~~~~~Ai~l~p~------~~~a 72 (414)
|..++...+.-.|+.+|...+.-.|.|..++...+.|+.++ .....|+..++.|+-+... ...+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 44677788888999999999999999976666666666554 3567899999999977542 5678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchh
Q 015029 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEG 152 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 152 (414)
.|+++++||.+.+|+.|..||..|+.+ ..+..+..|..++...++.....+. . ..+ .-+|+.++-
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~-~~~d~L~~We~rLet~L~~~~kkQ~-------~--~Tn-k~~I~~vEs---- 146 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNL-YVDDTLPLWEDRLETKLNKKNKKQK-------D--STN-KHTIKPVES---- 146 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHhHhhHhhc-------c--ccC-CCCCCchhh----
Confidence 999999999999999999999999998 5566688888777744433222100 0 000 000100000
Q ss_pred hhhhcccccccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCC---CCCCCccccccCCCeEEEEE
Q 015029 153 FCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAP---ARPKYRHEFYQKPEEVVVTV 229 (414)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~r~dW~Qt~~~V~i~i 229 (414)
+.. ....+..- ++.+|....++| ...+++|||.||..++.|.|
T Consensus 147 ----~e~-----------------------~GD~~~~~-------S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifi 192 (368)
T COG5091 147 ----IEN-----------------------RGDNNSSH-------SPISPLKIETAPQESPKMEIAYDFSETSDTAIIFI 192 (368)
T ss_pred ----hhc-----------------------cCcccccc-------CCCCccccccCcccCccceeeeeccccceeEEEEE
Confidence 000 00000000 011221111122 23467788888888888888
Q ss_pred EeCCCCCCceEEEEeeeEEEEEEEcCCCC-eeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCCccccCCCccCC
Q 015029 230 FAKGIPAKNVTVDFGEQILSVSIDVPGEE-AYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVP 308 (414)
Q Consensus 230 ~~k~~~~~~v~v~~~~~~l~v~~~~~~~~-~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~ 308 (414)
|.+-+..++|.+-++++.|+|++..+.+. .+.+.+.||++|.|+.+++++.+.++|+.|+|.+..+|..|++......
T Consensus 193 y~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S- 271 (368)
T COG5091 193 YRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADES- 271 (368)
T ss_pred ecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccc-
Confidence 88888889999999999999999876554 4556678999999999999999999999999999999999997632110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeee
Q 015029 309 QRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLS 388 (414)
Q Consensus 309 ~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~ls 388 (414)
......-.....+-|+|+++++||+++..+.+.| +| ++ ..+++|||+||++|||||||||||||+|||||+||
T Consensus 272 --~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~d--Ee--~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLS 344 (368)
T COG5091 272 --SRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGD--EE--NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALS 344 (368)
T ss_pred --cccccccccccccCCccccccccHHHhhhhhccc--cc--Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceec
Confidence 0000000011234478888999999999762211 11 12 33788999999999999999999999999999999
Q ss_pred cCcccccCcccccCCCCCcccccc
Q 015029 389 TNWKEVGSKKVEGSPPDGMEMKKW 412 (414)
Q Consensus 389 tnw~~v~~~~~~~~~p~g~e~k~~ 412 (414)
|||++|++++|++.||+|||.|+|
T Consensus 345 TdW~dVkskt~~t~pPeGMEPK~~ 368 (368)
T COG5091 345 TDWDDVKSKTITTEPPEGMEPKHW 368 (368)
T ss_pred ccHHHhhcCceecCCCCCCCCCCC
Confidence 999999999999999999999999
No 4
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=100.00 E-value=1.4e-41 Score=258.49 Aligned_cols=81 Identities=58% Similarity=0.998 Sum_probs=31.9
Q ss_pred CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccCcccccCCCCCccccc
Q 015029 332 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 411 (414)
Q Consensus 332 ~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~~~~~~~~p~g~e~k~ 411 (414)
+||++|......++++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++||++||+|||+||
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~ 81 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK 81 (82)
T ss_dssp ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence 58999986644445555566777899999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 015029 412 W 412 (414)
Q Consensus 412 ~ 412 (414)
|
T Consensus 82 ~ 82 (82)
T PF05002_consen 82 W 82 (82)
T ss_dssp -
T ss_pred C
Confidence 9
No 5
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.90 E-value=7.2e-24 Score=180.85 Aligned_cols=137 Identities=22% Similarity=0.330 Sum_probs=116.5
Q ss_pred cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecc-cccccccCCcceEEEeCcEEEEEEeeCCCC
Q 015029 216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 294 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 294 (414)
|.|.|++..|.++|.+.||+.++|+|+|++.+|.+.+....|++|.+.+ +|+++|.|+.|+.+|.+..|-|.++|.+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcc
Confidence 9999999999999999999999999999999999999988999999999 799999999999999999999999888889
Q ss_pred CCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHH
Q 015029 295 QWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRA 374 (414)
Q Consensus 295 ~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kra 374 (414)
+|.-|..-..... ....|+|- -+.|+.+++|++|++||.+||+||||.
T Consensus 157 rwd~Lt~~~Ke~K----------ek~kpsl~----------------------ke~DP~~glmnvmKk~YeDGD~~mK~t 204 (224)
T KOG3260|consen 157 RWDYLTQVEKECK----------EKEKPSLD----------------------KETDPSEGLMNVMKKIYEDGDDDMKQT 204 (224)
T ss_pred cchHHHHHHHHHh----------hccCcccc----------------------ccCChHHHHHHHHHHHHhcccHHHHHH
Confidence 9999874321110 01122221 112355689999999999999999999
Q ss_pred HHhhhhhcCC
Q 015029 375 MKKSFVESNG 384 (414)
Q Consensus 375 m~KS~~eS~g 384 (414)
|.|.|+||.-
T Consensus 205 IaKAWtesr~ 214 (224)
T KOG3260|consen 205 IAKAWTESRE 214 (224)
T ss_pred HHHHHHHhhh
Confidence 9999999973
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.89 E-value=3e-23 Score=163.99 Aligned_cols=87 Identities=36% Similarity=0.566 Sum_probs=83.0
Q ss_pred CccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029 214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 293 (414)
Q Consensus 214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 293 (414)
+||||||++++|+|+||+++++++++.|+|++++|+|.+..++++.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 69999999999999999999999999999999999998877778889999999999999999999999999999999998
Q ss_pred CCCCccc
Q 015029 294 IQWSSLE 300 (414)
Q Consensus 294 ~~W~~L~ 300 (414)
++|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999996
No 7
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.86 E-value=1e-21 Score=160.10 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=90.4
Q ss_pred ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-
Q 015029 215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 293 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 293 (414)
.++||||.+.|+|||+++++ .+++|+|++++|+|+....+|..|.++|+||++|+|++|+|++++++|||+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 47999999999999999974 799999999999999865567789999999999999999999999999999999975
Q ss_pred CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 015029 294 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 339 (414)
Q Consensus 294 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~ 339 (414)
.+|++|+++ ..+++|. ++|||||.+
T Consensus 81 ~~WprL~k~----------------~~k~~~l-----k~DfdkW~D 105 (106)
T cd00237 81 VAWPRLTKE----------------KAKPNWL-----SVDFDNWRD 105 (106)
T ss_pred CCCchhhcC----------------CCCCCcE-----ECcchhccC
Confidence 589999987 3446666 789999984
No 8
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.86 E-value=2.2e-21 Score=152.46 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.5
Q ss_pred ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCC
Q 015029 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 296 (414)
Q Consensus 217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 296 (414)
||||+++.|+|+|++++++++++.|+|++++|+|.+...++..|.+.++||++|+|++|+|+++++||||+|+|+++.+|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999987777789999999999999999999999999999999988999
Q ss_pred Cccc
Q 015029 297 SSLE 300 (414)
Q Consensus 297 ~~L~ 300 (414)
++|+
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9996
No 9
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=174.73 Aligned_cols=121 Identities=30% Similarity=0.458 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
.|+.++.+|+.+++.++|.+|+..|++||.++|.|+.+|++||.+|.++|.|+.|+.||+.||.+||.+.++|.|+|.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 121 (414)
+.+|+|.+|++.|+++++++|+|..+...|..++..+++..
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999997776655
No 10
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.82 E-value=3.8e-20 Score=152.49 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=80.2
Q ss_pred ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-CCCeeeecccccccccCCcceEEEeCcEEEEEEeeCC-
Q 015029 215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 292 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~- 292 (414)
-|+||||.+.|+|+|+++++ +++.|+|++++|+|++... ++..|.+.++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 48999999999999999988 8899999999999998654 5677999999999999999999999999999999999
Q ss_pred CCCCCccccCC
Q 015029 293 PIQWSSLEFSK 303 (414)
Q Consensus 293 ~~~W~~L~~~~ 303 (414)
+.+|++|++.+
T Consensus 80 ~~~W~~L~~~~ 90 (108)
T cd06465 80 GEYWPRLTKEK 90 (108)
T ss_pred CCCCcccccCC
Confidence 78999999763
No 11
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.78 E-value=8.8e-19 Score=140.12 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=80.2
Q ss_pred ccccccCCCeEEEEEEeCCCCC---CceEEEEeeeEEEEEEEcCCCCeeeeccc-ccccccCCcceEEEeCcEEEEEEee
Q 015029 215 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK 290 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~y~~~~~-L~~~I~p~~s~~~v~~~kiei~L~K 290 (414)
+|+|+|+.+.|+|+|+++++.. +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 6999999999999999999876 89999999999999987767788999995 9999999999999999999999999
Q ss_pred CCCCCCCccc
Q 015029 291 AEPIQWSSLE 300 (414)
Q Consensus 291 ~~~~~W~~L~ 300 (414)
+++.+|++|+
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9889999984
No 12
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.78 E-value=8.9e-19 Score=137.53 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.2
Q ss_pred ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCC
Q 015029 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 296 (414)
Q Consensus 217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 296 (414)
||||+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|++++.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999876656679999999999999999999999999999999998999
Q ss_pred Cccc
Q 015029 297 SSLE 300 (414)
Q Consensus 297 ~~L~ 300 (414)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9985
No 13
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.77 E-value=2.2e-18 Score=135.99 Aligned_cols=83 Identities=29% Similarity=0.448 Sum_probs=72.7
Q ss_pred cccccCCCeEEEEEEeCC--CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc--EEEEEEeeC
Q 015029 216 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST--KVEIRLAKA 291 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~--kiei~L~K~ 291 (414)
|||||++++|+|+||+|+ .+..++.+.+..++|++++..+ ++.|.++++||++|+|+. ++++.+. ||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 799999999999999885 5566777888888999998877 777999999999998664 8999854 999999999
Q ss_pred CCCCCCccc
Q 015029 292 EPIQWSSLE 300 (414)
Q Consensus 292 ~~~~W~~L~ 300 (414)
++..|++|.
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999983
No 14
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.8e-17 Score=161.51 Aligned_cols=116 Identities=32% Similarity=0.503 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
|+..+..|+.+|+.|+|..|+.+|++||..+|+++.+|.|||.||.+++++..|+.|++.+|+++|.+.++|+|.|.|++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
.+.+|+.|+++|+.+++++|++..+..++.+|..++
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999665
No 15
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-17 Score=142.12 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=90.6
Q ss_pred cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-
Q 015029 216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 293 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 293 (414)
.-|+|+.+.|+|+|.+. +..++.|.+++..|.|+... .++..|...|+||++|+|++|+++++++.|.++|+|++.
T Consensus 10 v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~~ 87 (180)
T KOG3158|consen 10 VKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKELG 87 (180)
T ss_pred chhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEccccc
Confidence 48999999999999998 44688999999989998765 566668888999999999999999999999999999987
Q ss_pred CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHh
Q 015029 294 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVK 342 (414)
Q Consensus 294 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~ 342 (414)
.+||+|++. ..+++|. ++|||||.++.+
T Consensus 88 ~~WprLtke----------------K~K~hwL-----kvDFdkW~Dede 115 (180)
T KOG3158|consen 88 EYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDE 115 (180)
T ss_pred cccchhhhc----------------ccccceE-----Ecchhhcccccc
Confidence 899999987 4578888 679999997643
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.64 E-value=8.3e-16 Score=118.89 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=72.8
Q ss_pred cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCC
Q 015029 218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 297 (414)
Q Consensus 218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~ 297 (414)
|+|+++.|+|+|+++|+.++++.|+++++.|.|+. ..|.+.++||++|+|+.|++++.+++|+|+|.|+++.+|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999998877754 3599999999999999999999999999999999889999
Q ss_pred ccc
Q 015029 298 SLE 300 (414)
Q Consensus 298 ~L~ 300 (414)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 996
No 17
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.64 E-value=9.1e-16 Score=118.54 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=69.9
Q ss_pred CccccccCCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029 214 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 290 (414)
Q Consensus 214 ~r~dW~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 290 (414)
.||+|+|+.+.|+|+|++++.. ++++.|+|++++|+|.+...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 4899999999999999997764 7999999999999999887766889999999999999999999999999999998
No 18
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.63 E-value=2.2e-15 Score=117.59 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=78.0
Q ss_pred cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-CCC
Q 015029 218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 296 (414)
Q Consensus 218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W 296 (414)
|+|+++.|+|+|+++++.++++.|+|++++|+|.+...++..|.+.++|+++|+|+.|++++.+++|+|+|.|+.+ .+|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876556789999999999999999999999999999999988 899
Q ss_pred Cccc
Q 015029 297 SSLE 300 (414)
Q Consensus 297 ~~L~ 300 (414)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9984
No 19
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-15 Score=150.61 Aligned_cols=114 Identities=30% Similarity=0.492 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
||..+..+||.+|..|+|+.|+.+|+.||.++|.|..+|.||+.||.++++|++|+.|..+.++++|+.+++|+|+|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+.+|+|++|+..|..+++++|+|..+...+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998888
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=2e-14 Score=124.66 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+...|..++..|+|++|+..|.+++..+|.+..+++++|.++..+|++++|+.+|.+|+.++|.++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|++++|+..|.+++.++|++......++.+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999998887777766
No 21
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.61 E-value=3.4e-15 Score=117.45 Aligned_cols=81 Identities=15% Similarity=0.331 Sum_probs=71.0
Q ss_pred cccccCCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeCCC
Q 015029 216 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 293 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~ 293 (414)
|+|+||.+.|+|+|++ +++..+++.|+|++++|.|.+. ++. ..+..+||+.|+|++|+|++... +|+|+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~-~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQA-PLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCC-eEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 8999999999999999 5888999999999999999874 233 34677999999999999999755 79999999986
Q ss_pred -CCCCcc
Q 015029 294 -IQWSSL 299 (414)
Q Consensus 294 -~~W~~L 299 (414)
.+|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 599998
No 22
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=128.51 Aligned_cols=122 Identities=31% Similarity=0.432 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~ 76 (414)
|..++..|+.+|..|+|++|...|..||.+.|.. ..+|.|||.|+++++.++.|+.+|.+||+|+|.+.+|+.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4678899999999999999999999999999986 57999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY 123 (414)
Q Consensus 77 g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 123 (414)
|.+|..+..|++|++.|.+.++++|...+++..+.++...++.+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999998888887666554443
No 23
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.60 E-value=2.7e-16 Score=155.07 Aligned_cols=320 Identities=23% Similarity=0.171 Sum_probs=203.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
||+.+..+|+.+|....|+.|+.+|++||+++|+++.++.+|+.+|++.++|..|+.|+.+||+++|...++|+|+|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhhcccc
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEE 160 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 160 (414)
..+++|.+|+..|+....+.|+++.+...+..|+....+..+ ...+.-
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f-------------------------------e~ai~~- 130 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF-------------------------------EKAILT- 130 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh-------------------------------hhcccC-
Confidence 999999999999999999999999999999999944332111 000100
Q ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCCCCCCCccccccCCCeEEEEEEeCCCCCCceE
Q 015029 161 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240 (414)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~ 240 (414)
+.+.+..+..+. .... ... + ....-..+++.-. .++.+.++
T Consensus 131 ~~~d~~s~~~~~---------------~~~~-------~~~---~-i~~~y~g~~le~~-------------kvt~e~vk 171 (476)
T KOG0376|consen 131 PEGDKKSVVEMK---------------IDEE-------DMD---L-IESDYSGPVLEDH-------------KVTLEFVK 171 (476)
T ss_pred CccCCccccccc---------------cccc-------ccc---c-cccccCCcccccc-------------hhhHHHHH
Confidence 000000000000 0000 000 0 0111111121111 11111211
Q ss_pred EEEeeeEEEEEEEcCCCCeeeecccccccccCCcce-EEEeCcEEEEEEeeCCC-CCCCccccCCCccC--CcccCCCCC
Q 015029 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR-YEVLSTKVEIRLAKAEP-IQWSSLEFSKGAVV--PQRVNPPSV 316 (414)
Q Consensus 241 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~-~~v~~~kiei~L~K~~~-~~W~~L~~~~~~~~--~~~~~~~~~ 316 (414)
.-+ .+ + . ..+.+.-.+.+.|+...+. +++.+.-|+|. ..+ .+|.-.-....+.- ...+..
T Consensus 172 ~~~-----~~-~--~--~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l--- 235 (476)
T KOG0376|consen 172 TLM-----EV-F--K--NQKKLPKKYAYSILDLAKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFEL--- 235 (476)
T ss_pred HHH-----Hh-h--h--cccccccccceeeHHHHhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhh---
Confidence 111 00 0 0 1122333344455555444 33455567777 223 34443332211110 000000
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccC
Q 015029 317 SGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGS 396 (414)
Q Consensus 317 ~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~ 396 (414)
. ..+..++.+ -...||..+.....+-.......+....|+||-..+...+++|.+.|-..+-.+.+++..++|-.+
T Consensus 236 ~-g~Ps~t~~y-lfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~-- 311 (476)
T KOG0376|consen 236 N-GLPSETNPY-LFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS-- 311 (476)
T ss_pred c-CCCCCcccc-cccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh--
Confidence 0 111112211 123466655533222222334455567899999999999999999999999999999999999998
Q ss_pred cccccCCCCCcccccc
Q 015029 397 KKVEGSPPDGMEMKKW 412 (414)
Q Consensus 397 ~~~~~~~p~g~e~k~~ 412 (414)
.|..-+|-++....|
T Consensus 312 -~~f~~LPl~~~i~~~ 326 (476)
T KOG0376|consen 312 -EVFIWLPLAHLINNK 326 (476)
T ss_pred -hhhccccchhhhcCc
Confidence 778889999988776
No 24
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3e-14 Score=138.36 Aligned_cols=116 Identities=23% Similarity=0.393 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~ 66 (414)
|...+..|+.+|+.|+|..|+..|.+|+..-... ..++.|+|.||+++++|..|+..|++++.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 5567889999999999999999999999864322 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
|.|.+|+||+|.||..+|+|+.|+..|+++++++|.|..+...+..|.+..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988444
No 25
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.59 E-value=6.8e-15 Score=115.68 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=73.3
Q ss_pred cccccCCCeEEEEEEeC-CCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC-cEEEEEEeeCCC
Q 015029 216 HEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 293 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~k-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~ 293 (414)
|+|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++.. ..+.+...||++|+|++|+|++.+ ++|+|+|.|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 79999999999999774 6788999999999999998752 347788899999999999999999 999999999997
Q ss_pred -CCCCcc
Q 015029 294 -IQWSSL 299 (414)
Q Consensus 294 -~~W~~L 299 (414)
.+|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 26
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.56 E-value=9.5e-15 Score=131.64 Aligned_cols=91 Identities=33% Similarity=0.492 Sum_probs=84.0
Q ss_pred CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029 212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 290 (414)
Q Consensus 212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 290 (414)
.++||||.||+..|+|+||.++..++.-.|+.....|+|.|.. .++..|.++++|++.|++++|++.+..+||||+|+|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 4789999999999999999999888888899999999999776 466679999999999999999999999999999999
Q ss_pred CCCCCCCccccC
Q 015029 291 AEPIQWSSLEFS 302 (414)
Q Consensus 291 ~~~~~W~~L~~~ 302 (414)
++++.|.+|+..
T Consensus 293 ~ep~sWa~Le~p 304 (320)
T KOG1667|consen 293 AEPGSWARLEFP 304 (320)
T ss_pred cCCCCcccccCC
Confidence 999999999975
No 27
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=3.2e-13 Score=116.63 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+.++..|..++..|++++|...|.-++.++|.++..|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|+|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+|+.+.|..+|+.++.+...+++......+++
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAE 147 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 99999999999999998866665555555555
No 28
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.53 E-value=3e-14 Score=134.78 Aligned_cols=114 Identities=27% Similarity=0.366 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+.+++.+|+.||++|.|++||.+|++++..+|.|+.++.|||.+|+++++|..|..||+.|+.|+....+||.|+|.+.+
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
.+|...+|...|+.+++|.|.+.++...++.+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999988888777664
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.3e-12 Score=111.22 Aligned_cols=113 Identities=18% Similarity=0.283 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+...|..++..|+|++|+..|++++..+|.++.++.++|.+|+.+|++.+|+..+++++.++|.++..++.+|.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
+|+++.|...|+++++++|++..+.....++..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999988877777763
No 30
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.47 E-value=2.4e-13 Score=108.12 Aligned_cols=81 Identities=26% Similarity=0.516 Sum_probs=71.9
Q ss_pred ccccccCCCeEEEEE-EeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcE-EEEEEeeCC
Q 015029 215 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 292 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~ 292 (414)
+|+|+||.+.|+|+| +.+++...++.|.|+.++|.|.+. |.. .+..+||+.|+|++|.|.+.+.+ |+|.|.|..
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 799999999999999 667899999999999999999874 334 56779999999999999999999 699999986
Q ss_pred CC---CCCcc
Q 015029 293 PI---QWSSL 299 (414)
Q Consensus 293 ~~---~W~~L 299 (414)
.. .|++|
T Consensus 83 ~~~~~~W~sl 92 (93)
T cd06494 83 RDAGNCWKSL 92 (93)
T ss_pred CCCCcccccc
Confidence 54 89987
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=5.3e-12 Score=122.54 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..++.+|..+...|++.+|+..|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (414)
..|++++|+..|++++.++|+++....|
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999853333
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-12 Score=128.71 Aligned_cols=111 Identities=24% Similarity=0.426 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
|..++.+||.+|+.|+|++||.+|+.||.++|+.+..|.||+.||..+|+|++.+.++.+|++++|+..+|++|++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASL-APGDSRFTNLIKE 112 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l-~p~~~~~~~~l~~ 112 (414)
.+|++++|+....-..-+ +-.|......+.+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR 226 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAER 226 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHH
Confidence 999999999888743322 2234444444433
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-12 Score=125.45 Aligned_cols=115 Identities=29% Similarity=0.489 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
+....+|+.+|+.|+|..|.+.|+.||.++|++ +.+|.+||.+..++|+..+|+.+|+.|+.|++...++++++|.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 457889999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM 118 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 118 (414)
|+..+++|++|++.|++|.++..+ ...+..+.+++..+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999999999999999887 666666767665443
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=2.9e-11 Score=110.39 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~-~kl~~--~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
++.+...|..+...|++++|+..|.+|+.++|+++.++.++|.++ ...|+ +.+|+..++++++++|+++.+++.+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 356778888899999999999999999999999999999999875 56676 589999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
+++.+|+|++|+.+|++++.++|.+..-...+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999998888765444333
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.31 E-value=6.8e-11 Score=126.13 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+...|..++..|++++|+..|.++|.++|++..+|+++|.+|..+|++++|+.+|++++.++|.++.+++.+|.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
+|+|++|+.+|++++.++|++......++.+...++........
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999988877777776554444444333
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.31 E-value=7.3e-11 Score=97.39 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
++.++..|..++..|+|++|+.+|.+++...|++ ..+++.+|.++++.|+|+.|+..|+.++..+|.+ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578899999999999999999999999999876 5789999999999999999999999999999874 678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (414)
+|.++..+|++++|...|.+++...|++......
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999998865544
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=1e-10 Score=124.76 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+...|.+++..|+|++|+..|.++|..+|+++.+++.+|.+|+.+|+|++|+.+|++++.++|++..+++.+|.+++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 121 (414)
.+|+|++|+..|++++.++|.++.+...++.+...++.-.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 9999999999999999999999998888888775544433
No 38
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-11 Score=124.22 Aligned_cols=120 Identities=19% Similarity=0.151 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+.+.|+.+-..+.|+.|+..|.+|+.+.|+.+.++.|+|-+|+.+|.++-||.+|++||++.|.++.||.++|.++.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 35677778888888888888888888888888887788888878888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 121 (414)
..|+..+|..+|.+++.+.|........++.+++-++.-.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 8888888888888888888888887777777775554433
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.29 E-value=2.2e-11 Score=95.90 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=70.9
Q ss_pred cccccCCCeEEEEEEeCC---CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeC
Q 015029 216 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 291 (414)
Q Consensus 216 ~dW~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 291 (414)
|.|.||.+.|+|+|.++. +...++.|+++.++|+|.+. |..+.+..+||+.|++++|+|.+.+. .|+|.|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 789999999999998743 67799999999999999875 33567888999999999999999875 799999999
Q ss_pred CC-CCCCcc
Q 015029 292 EP-IQWSSL 299 (414)
Q Consensus 292 ~~-~~W~~L 299 (414)
.+ .+|++|
T Consensus 78 ~~~~wW~~l 86 (87)
T cd06492 78 NKMEWWSRL 86 (87)
T ss_pred CCCcccccc
Confidence 66 699987
No 40
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.8e-11 Score=115.74 Aligned_cols=109 Identities=26% Similarity=0.414 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~ 76 (414)
.|+.++..||.+|+.++|..|+..|+++|.....+ +.+|.|||.|.+.+|+|..|+.||.+|+.++|.+.++|+|-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 37889999999999999999999999999985443 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (414)
Q Consensus 77 g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (414)
|.|++.+.++++|..+++.++.++-....+...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 999999999999999999888776655544333
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.27 E-value=3.6e-11 Score=97.11 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=75.3
Q ss_pred ccccccCCCeEEEEEEeCC-C-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeC
Q 015029 215 RHEFYQKPEEVVVTVFAKG-I-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 291 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~-~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 291 (414)
+|.|.||.+.|+|+|.++. + ...++.|+|+.++|.|.+...++..-.+..+||+.|++++|.|.+.+. .|+|.|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 6999999999999998764 3 468999999999999998743333335777999999999999999985 589999998
Q ss_pred CCCCCCccccCC
Q 015029 292 EPIQWSSLEFSK 303 (414)
Q Consensus 292 ~~~~W~~L~~~~ 303 (414)
...+|++|...+
T Consensus 86 ~~~wW~~v~~g~ 97 (102)
T cd06495 86 SEVWWNAVLKGE 97 (102)
T ss_pred CCcccchhhCCC
Confidence 778999997653
No 42
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-11 Score=111.81 Aligned_cols=114 Identities=25% Similarity=0.428 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
||+++..+|+.+|..+.|..||..|.+||.++|..+.+|.||+.||+++++++.+..++.+|+.++|+..+++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPG-----DSRFTNLIKEFV 114 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~ 114 (414)
.....|.+|+..++++..+--. -..+...|..++
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999665321 223555566555
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=2.6e-11 Score=122.43 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+-+.|.+|+.+|..+-||..|.+||++.|+.+++|.|+|.++-..|+..+|.++|++|+++.|+++.+.+++|.+|..
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34555667788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
+|.+++|...|.++++..|........++.+.+.++....+.
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 888888888888888888887777777777776665544443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.6e-11 Score=125.07 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+.+...||++..+++++.||..|.+||+++|+++-+|..+|+-+..+..|+.|..+|..|+.++|.+..|||-+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
.++|+.|...|++|++++|.+..+...++..+..++...++++...+
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999888888887766555
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.23 E-value=1.6e-10 Score=89.05 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+...|..++..|++.+|+..|.++++..|.+..++..+|.+|...+++++|+.+++.++.+.|.+..+++.+|.++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCC
Q 015029 84 EEYETAKVALEKGASLAPG 102 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~ 102 (414)
|+++.|...|..++.++|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=4.1e-11 Score=89.89 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg-~y~~A~~~~~~a~~l~p 101 (414)
+..|..+|.+++.+|+|++|+.+|.+|+.++|+++.+++++|.+|+.+| ++.+|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444455555555555555555555555555555555555555555554 35555555555554444
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=9e-11 Score=111.47 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
++.+...|+.++..|++..|+.+|..|++.+|++..+++.||.+|+.+|+-.-|+.|+.+++++.|++.-|...+|.++.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRF 106 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~ 106 (414)
.+|+++.|...|.+++..+|++...
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchh
Confidence 9999999999999999999976543
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=5.3e-11 Score=89.24 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p 67 (414)
|..+...|..++..|+|++|+.+|+++|+.+|+++.+++++|.||.++| ++.+|+.+|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6789999999999999999999999999999999999999999999999 79999999999999998
No 49
>PRK15331 chaperone protein SicA; Provisional
Probab=99.22 E-value=2.7e-10 Score=98.99 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+..+..|..+|..|+|++|...|.-....+|.++.+++.+|.|+..+++|++|+..|..|..++++++..+|+.|.||+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
+|+...|+.+|+.++. .|.+..+......
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~ 146 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALV 146 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9999999999999988 5666655554433
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.1e-11 Score=117.95 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+.++|+.+|..|+|++|++.|.+||..+..+..+++++|..+..+|++++|+.||-+.-.+--++.+.++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44677899999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhh
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLF 156 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 156 (414)
.+.+...|+++|.++..+-|+++.+...++.++...+.+..+.+.+|+..|.+.-....+.|....++.-++.++
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999988666668888888766666544
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=6.7e-10 Score=117.02 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (414)
Q Consensus 14 ~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~ 93 (414)
..+++++|+.++.+|++++|+++.++..+|.++..+|++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCHHH
Q 015029 94 EKGASLAPGDSRF 106 (414)
Q Consensus 94 ~~a~~l~p~~~~~ 106 (414)
+++++++|.+...
T Consensus 396 ~~Al~l~P~~~~~ 408 (553)
T PRK12370 396 NECLKLDPTRAAA 408 (553)
T ss_pred HHHHhcCCCChhh
Confidence 7777777776544
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.6e-10 Score=118.01 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
+++-.|..|+++++++.|.-+|.+|+.++|.+..+++..|..+.++|+.++|+..+++|+.++|.++...|.+|.+++.+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
++|++|+..|+...++.|++..+...++++.+.++....
T Consensus 571 ~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 999999999999999999999888889888866655444
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2e-10 Score=113.48 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
||+.+..+|..+|-.|++-.|.+.++++|.++|.+..+|+.||.+|+..++-++-..+|+.|..+||.++..||.+|+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 67888888999999999999999999999999888888999999999999889999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRF 106 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~ 106 (414)
+.+++|++|+..|++++.|+|.+.-.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 99999999999999999999877643
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.18 E-value=8.1e-10 Score=98.51 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
+..+...|..++..|+|++|+.+|.+++...|+. ..++.++|.+|.++|+|++|+..+.+++.+.|.+..+++.+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567889999999999999999999999987653 5789999999999999999999999999999999999999999
Q ss_pred HHHHcCC--------------hHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 015029 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (414)
Q Consensus 79 ~~~~lg~--------------y~~A~~~~~~a~~l~p~~~-~~~~~l~ 111 (414)
+|..+|+ |..|..++++++.++|++- .+..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999998 6788888888888888763 3444443
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.16 E-value=3.8e-10 Score=97.75 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 22 i~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p 101 (414)
..+|+++|+++|++ +.++|.++..+|+|++|+.+|.+++.++|.+..+|+.+|.++..+|+|++|..+|.+++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46799999999885 667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 102 GDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
.+......++.|...+++...+......
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998776666555544443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=2e-09 Score=98.09 Aligned_cols=122 Identities=17% Similarity=0.069 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+...|..++..|+|++|+..|.+++..+|++..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhhhhh
Q 015029 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKEFVGLLMQNAVY 123 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~~~~~~~~ 123 (414)
.+|++++|...|.+++... +........++.+....+.....
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988754 33344444455555444333333
No 57
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=1.3e-09 Score=99.56 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 015029 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~-~~lg~--y~~A~~ 91 (414)
.++.++++..|.++|+.+|+++.+|..+|.+|..+|++++|+..|++|++++|+++.+++.+|.++ +..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 77788 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 92 ALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
.|+++++++|++..+...++.+.-..+.-..+..+...
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999998887555554444443333
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.1e-09 Score=115.42 Aligned_cols=126 Identities=16% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
++.+...|..+...|++++|+.+|.+|++++|+++.+++.+|.+|..+|++++|+..++++++++|.++.+++.++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999888888888899
Q ss_pred HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhhhhhhH
Q 015029 82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKEFVGLLMQNAVYLCWN 127 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~~ 127 (414)
.+|+|++|...+++++... |+++.+...++.+...++....+..+.
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999875 778888888888886666655554443
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=1.2e-09 Score=116.73 Aligned_cols=122 Identities=11% Similarity=-0.062 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
++.++..|.+....|.|++|..++..++++.|++..++.+++.++.+++++++|+..+++++..+|++..+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY 123 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 123 (414)
.+|+|++|..+|++++..+|++..+...++.+.+..++...+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999888888887766554443
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.15 E-value=7.7e-10 Score=93.98 Aligned_cols=110 Identities=20% Similarity=0.131 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 23 ~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
++|.+++..+|++..+++.+|.+++..|++.+|+..+++++.++|.++.+++++|.+++.+|++++|...|++++.++|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029 103 DSRFTNLIKEFVGLLMQNAVYLCWNYELLR 132 (414)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (414)
+......++.+....+....+..+.....+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999777766666665554443
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.6e-10 Score=110.36 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=98.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~ 87 (414)
.||-+...+++++|+.+|.+||+++|....+|..+|+-|+.+++-..|+..|++|+.++|.+.+|||-+|++|.-|+...
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 47777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029 88 TAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY 123 (414)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 123 (414)
-|+.+|++++.+-|.|+.+...+++|+..++....+
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 888888888888888888888888888776554443
No 62
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.13 E-value=1.3e-10 Score=90.94 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029 14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 14 ~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
.+|+|+.|+.+|++++...|. +..+++.+|.||+++|+|.+|+..+++ ...++.+...++.+|.|++.+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 015029 92 ALEKG 96 (414)
Q Consensus 92 ~~~~a 96 (414)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.12 E-value=1.4e-09 Score=120.30 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+...|.++...|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|++|++++|+++.+++.+|.++..+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|++++|..+|++++.++|++..+....+.+.
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 6666666666666666666665555444443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=4.8e-09 Score=95.61 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~ 80 (414)
..+...|..++..|++++|+..|.+++...|.+..++.++|.+|+..|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999864 45677899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
+..|++++|...|.+++..+|.+......+..+....+.-..+..+..+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999888777777776555554444444433
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=3.3e-09 Score=98.97 Aligned_cols=111 Identities=24% Similarity=0.241 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~---a~~~ 75 (414)
++.++..|..++..|+|+.|+..|.+++..+|+++ .+++.+|.+|+.++++++|+..|++++++.|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 56789999999999999999999999999999875 68899999999999999999999999999997665 7999
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 76 ~g~~~~~l--------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
+|.+++.+ |+++.|...|++++..+|++......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 99999987 88999999999999999998766544433
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.6e-09 Score=105.14 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+.-.|..+...++...||+.|++|++++|.+..+|+.+|++|.-++...=|+-.|++|+.+.|.++..|-.+|.||..+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
++.++|+.||.+++.+...+..+...++++.+.+.....+.++..+
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999888777776655443
No 67
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.8e-09 Score=96.43 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIE 64 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~----------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~ 64 (414)
..+.+.||.+|+.|+|.+|...|..||-. .|.. ..++.|.++|++..++|-+++..+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999998754 4554 45789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 015029 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKEFV 114 (414)
Q Consensus 65 l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~-~~~~l~~~~ 114 (414)
.+|.+.+|||++|.+....-+.++|.+.|.++++++|.-.. +...+.-+.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997443 444444444
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=4.5e-09 Score=95.40 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+....+.|..++..|++..|...+++||+.+|++..++..||..|.++|..+.|-+.|++|+.++|++..++.+.|--++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999988877777777777
Q ss_pred HcCChHHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGAS 98 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~ 98 (414)
..|+|++|+..|++++.
T Consensus 115 ~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 115 AQGRPEEAMQQFERALA 131 (250)
T ss_pred hCCChHHHHHHHHHHHh
Confidence 77777777777777664
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=7.9e-10 Score=106.24 Aligned_cols=126 Identities=20% Similarity=0.147 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
-+...|..+...|++++|+..|.+||..+|++..++..++.+++..|+++++...+.......|.++..+..+|.+|+.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 45678888999999999999999999999999999999999999999999888888888887788888888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
|++++|+.+|++++..+|+|+.+...++.+....+....+...+.+
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998888666555555444433
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=4.4e-09 Score=93.33 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
+..+...|..++..|+|++|+..|.+++.+.|+. +.++.++|.+|..+|++++|+.+|++|+.++|....+++.+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4567889999999999999999999999987663 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HcCChH-------HHHHHHHHHHHhCCCCH
Q 015029 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS 104 (414)
Q Consensus 79 ~~~-------~lg~y~-------~A~~~~~~a~~l~p~~~ 104 (414)
++. .+|+++ +|...|++++.++|.+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999 777766 55666667777887644
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.05 E-value=6.1e-09 Score=115.39 Aligned_cols=117 Identities=22% Similarity=0.241 Sum_probs=105.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A 89 (414)
..++..|++++|+.+|.++++++|+ +.++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444559999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhH
Q 015029 90 KVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWN 127 (414)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 127 (414)
+..|++++.++|++..+...++.+...++.-..+....
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999998886666655544433
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.04 E-value=9e-09 Score=97.88 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=98.8
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 015029 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (414)
Q Consensus 3 e~~~~~g~~~-~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~ 75 (414)
...+..|..+ +..|+|++|+..|...|...|++ +.+++.+|.+|+..|+|++|+..|.+++...|+ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456777776 66899999999999999999998 589999999999999999999999999999887 5889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF 113 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (414)
+|.++..+|+++.|...|+++++..|+...+.....++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999988665554443
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=6.4e-09 Score=96.09 Aligned_cols=110 Identities=21% Similarity=0.197 Sum_probs=104.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+..+|..++..|+|..|+..+.++..+.|+++.+|..+|.+|.++|++++|...|.+|+++.|..+.++-++|..|+..|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+++.|...+..+...-+.+..+...+..+.
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999999988888999998888777
No 74
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.03 E-value=8.2e-09 Score=110.83 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=66.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~----Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++ |+..|++++.++|++..+++.+|.++...
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 34555566666666666666666666666666666666666666654 56666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
|++++|+..|++++.++|++..+...++.+...+
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 6666666666666666666665555555544333
No 75
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.02 E-value=9e-09 Score=110.52 Aligned_cols=130 Identities=10% Similarity=0.026 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~----Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
..+...|..++..|++++ |+..|.+++.++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345678999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR 132 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (414)
+|..+|++++|+..|++++..+|.+..+...++.+...++....+........+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999876665566666555555555555544443
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=8.3e-10 Score=111.24 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
....|..++..|+|++|+..|+.||...|+|..+|..+|..+....+..+|+..|.+|+.|.|.+.+++|++|++|..+|
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 015029 85 EYETAKVALEKGASLAPG 102 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~ 102 (414)
.|++|..+|-.++.+.+.
T Consensus 513 ~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 999999999999998765
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.4e-09 Score=80.46 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=36.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 41 ~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
.+|..|+..|+|++|+.+|+.++..+|.++.+++.+|.+++.+|++++|...|++++.++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555666666666666666566555666666666666666666666666665555554
No 78
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.99 E-value=1.6e-08 Score=106.48 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
++.+..+||.+|..|++++|..++.++|+++|.++.+|..+|.+|..+|+.++|+.++-.|-.++|.+...|.+++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
.+|+++.|..||.++++++|.+-.+......+.+..+....+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence 9999999999999999999999877666666666555554444
No 79
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.98 E-value=1.1e-08 Score=84.87 Aligned_cols=100 Identities=27% Similarity=0.326 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT 78 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~----~~a~~~~g~ 78 (414)
..+-.+|..+...|+.+.|++.|.++|.+.|.++.+|.||+++|.-.|+.++|+.|+++|+++.... -.+|..+|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999997653 358999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC
Q 015029 79 ACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
+|..+|+-+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999999888764
No 80
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.98 E-value=1.5e-09 Score=82.85 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.3
Q ss_pred cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-------CCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029 218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 290 (414)
Q Consensus 218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 290 (414)
|+|+++.|+|+|+++++.++++.|.+.++.|.|++... +...|.+.+.|+++|+|+.+++.+.+..|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999997654 24579999999999999999999999999999987
No 81
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=98.97 E-value=3.1e-09 Score=91.81 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=71.9
Q ss_pred CccccccCCCeEEEEE-EeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029 214 YRHEFYQKPEEVVVTV-FAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 291 (414)
Q Consensus 214 ~r~dW~Qt~~~V~i~i-~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 291 (414)
-.|.|+||-..|.|.| +.++. +..+|.|.+..++|.|.+. |.+-.+..+|+++|++++|.|.|.+.++.+++-|+
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence 3699999999999998 45565 7789999999999998875 44467788999999999999999999776666555
Q ss_pred CC--CCCCccccCC
Q 015029 292 EP--IQWSSLEFSK 303 (414)
Q Consensus 292 ~~--~~W~~L~~~~ 303 (414)
.. .+|.+|...+
T Consensus 96 ~~~~eWW~~ll~ge 109 (179)
T KOG2265|consen 96 SNKMEWWDSLLEGE 109 (179)
T ss_pred cchHHHHHHHHcCC
Confidence 54 8999988654
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=2.5e-08 Score=93.09 Aligned_cols=124 Identities=15% Similarity=0.024 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~---~~~~ra~~~~kl--------~~~~~Al~~~~~Ai~l~p~~~~ 71 (414)
..+...|..++..|++++|+..|.++++..|+++. +++.+|.+++.. +++++|+..|++++..+|.+..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35678899999999999999999999999998865 789999999987 8899999999999999998754
Q ss_pred H-----------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhhhhhh
Q 015029 72 A-----------------YWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 72 a-----------------~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
+ .+.+|.+|+..|++.+|+..|+.++...|+++ .+...+..+...++....+..+
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3 24678899999999999999999999988654 5667777777655555554443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.5e-08 Score=98.31 Aligned_cols=110 Identities=16% Similarity=0.033 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029 15 DDYFELAYDLYSQAIEISP---N-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P---~-~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~ 90 (414)
.+..+.+|..++++|...| . .+.+|+++|.+|..+|++.+|+.+|.+|+.++|+++.+|+.+|.++..+|+|++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456889999999997443 3 37889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 91 VALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
..|.++++++|++..+...++.+....++...+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999988888877764444444433
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=2.8e-09 Score=78.93 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~ 70 (414)
+..|..++..|+|++|+..|.++++..|+++.+++.+|.+++.+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999874
No 85
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.94 E-value=2.3e-08 Score=85.17 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
+++++..|..++..|+|.+|+..|.......|.. ..+.+.++.+|++.++|.+|+..+++-|+|+|.+ .-++|+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5688999999999999999999999988887765 6889999999999999999999999999999975 569999
Q ss_pred HHHHHHHcCC---------------hHHHHHHHHHHHHhCCCCHHHHH
Q 015029 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFTN 108 (414)
Q Consensus 76 ~g~~~~~lg~---------------y~~A~~~~~~a~~l~p~~~~~~~ 108 (414)
+|.+++.+.. ...|...|++.+..-|+..-+..
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999987 88999999999999998775543
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=2.8e-08 Score=90.24 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACM 81 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--~p~~~~a~~~~g~~~~ 81 (414)
.+..++..+...|+.+.|-+.|.+||.++|++.+++.|.|..++.+|+|++|...|++|+.. -+..+..+-++|.|-.
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999974 2346889999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
++|+++.|...|+++++++|+++.....+.+.+.
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 9999999999999999999999877766666553
No 87
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.90 E-value=1.3e-09 Score=103.94 Aligned_cols=113 Identities=32% Similarity=0.403 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
+|.+.+-++..++.+|.++.||++|+.||.++|.++.+|..|+.+|++++....|++||..|+.++|+....|-.+|.+.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 36677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
..+|++.+|..+|..+++++.+ .....|+..+.
T Consensus 193 rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~ 225 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYD-EANSATLKEVF 225 (377)
T ss_pred HHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhc
Confidence 9999999999999999999985 44667777666
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=4.6e-08 Score=106.99 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+...|..+...|++.+|+.+|.++|..+|.++.++..+|.++...|++++|+..+++++.++|++.. ++.+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 3457888999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
..|++++|+..|++++.++|++..+...+..+..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988877766653
No 89
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=3.7e-08 Score=96.36 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=60.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHH
Q 015029 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--ETA 89 (414)
Q Consensus 13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y--~~A 89 (414)
...+.+++|+..++++|+++|.+..++..|+.++..++ .+++|+.++++++..+|.+..+|+.++.++..+|++ ..+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34455566666666666666666666666666666665 456666666666666666666666666666555552 455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 90 KVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+.++.++++++|.|-.+....+.+...+
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 5555566666666555544444444333
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.90 E-value=5e-08 Score=106.60 Aligned_cols=116 Identities=22% Similarity=0.174 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+...|..++..|++++|+..|.+++..+|++..+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM 118 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 118 (414)
.|++++|..+|++++.++|.+..+...+..+....+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG 241 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999887777666654433
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=4.9e-08 Score=111.38 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------H
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK--------------A 72 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~--------------a 72 (414)
..|..++..|++++|+..|.++|..+|+++.++..+|.+|+++|++++|+.+|++++.++|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 34778888888888888888888888888888888888888888888888888888888876432 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
.+.+|.++...|++++|...|++++.++|.+..+...++.+....+....+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2234666667777777777777777777776666666666554444444333
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=6.8e-08 Score=103.38 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+...+..+.+.+.+++|+..+.++|..+|+++.+++.+|.++.++|+|++|+..|++++..+|++..++..+|.++.
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGD-SRFTNLIKEFV 114 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~-~~~~~~l~~~~ 114 (414)
.+|+.++|..+|++++.+...- ..+...+.++.
T Consensus 200 ~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN 233 (694)
T ss_pred HcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 9999999999999999876543 33344454444
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=7.3e-08 Score=91.97 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+..+...++-.|++..||+..+..|++.|-++.++..||.||...|....||.|...|-.|..++.+.+|.++.++|..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ 119 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 119 (414)
|+...++...+.|++++|++..+.-.+.++++....
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999877777666655443
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.86 E-value=1.1e-07 Score=95.13 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLE 84 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~~~~lg 84 (414)
...|..++..|++++|+.+|.++++..|++..+++.+|.+|.+.|++++|+..+++++.++|.+ ..++..++.+|..+|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 3455566666677777777777766666666666666777777777777777777776666654 345566666666777
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++++|...|++++.++|+...+ ..+..+.
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~~-~~la~~~ 292 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADLL-LALAQLL 292 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence 7777777777666666655433 3344443
No 95
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=1.2e-07 Score=92.92 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 3 e~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~--~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
..+..+|.++...| ++.+|+..++++++.+|.+..++.+|+.++.++++. .+++.+++++++++|.+..+|..+|.+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45677889999988 689999999999999999999999999999999874 789999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+..+|+|++|++++.++++++|.|..+...+..+.
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 99999999999999999999999998887776655
No 96
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.84 E-value=8.4e-08 Score=109.49 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-------
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT------- 78 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~------- 78 (414)
...|..++..|++++|+.+|.+++.++|+++.+++.+|.+|..+|++++|+..|++++.++|.+..++..++.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 3557888889999999999999999999888888889999999999999999999999998887766554443
Q ss_pred -----------------------------------HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029 79 -----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ 119 (414)
Q Consensus 79 -----------------------------------~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 119 (414)
++...|++++|+..|++++.++|++..+...+..+...++.
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44567888899999999999999888877777766644443
No 97
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.84 E-value=8.6e-08 Score=104.77 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~ 85 (414)
...|..+...|++++|+.+|.++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.+++.+|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 3444555555555555555555555555555555555555555555 445555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 86 YETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+++|...|+++++++|.++.+...+..+.
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 55555555555555555555555554444
No 98
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.84 E-value=1.6e-08 Score=76.45 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=41.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 44 ~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
.+|+..++|+.|+.++++++.++|+++.+++.+|.+++.+|+|.+|..+|++++.+.|++..+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666665554443
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=3.8e-08 Score=102.22 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~--~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
+..++..|..+...|.+.+|.+.|..|+.++|+.+.+...+|.+|+..|+-..|.. ....|+++||.++++||++|.+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998887777 9999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (414)
+..+|+.+.|.+||..|+++++.+|-
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999998874
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=1.4e-08 Score=75.61 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=44.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
++..|+|++|+.+|.+++..+|++..+++.+|.||++.|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3556677777777777777777777777777777777777777777777777777666555555543
No 101
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.80 E-value=1.8e-07 Score=93.66 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----KAYWRKATA 79 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-----~a~~~~g~~ 79 (414)
+...|..++..|++++|+..|.+++...|.+..++..++.+|.+.|++++|+..+..++..+|... ..++.+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 455677777888888888888888877777777777888888888888888888888777776542 245567777
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
+...|++++|...|+++++++|.+......++.+....+.-..+.
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 778888888888888888777777666666666654444433333
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.80 E-value=8.3e-08 Score=83.16 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=87.8
Q ss_pred HhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029 30 EIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (414)
Q Consensus 30 ~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~ 108 (414)
.+. ++..+.++.+|..++..|++++|...|+.++.++|.+...|+.+|.|+..+|+|.+|+.+|.++..++|+|+....
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 356 6778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 015029 109 LIKEFVGLLMQNAVYLC 125 (414)
Q Consensus 109 ~l~~~~~~~~~~~~~~~ 125 (414)
.++.|.-.++.......
T Consensus 108 ~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 108 AAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 99999966666555543
No 103
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-07 Score=89.69 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
++.+...|..++..|++..|+..|.+|+++.|+|+..+..+|.+++... .-.+|...+++|+.+||.+..+.+.+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999998864 5678999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
.+|..|+|.+|...++..+.+.|.+..-...+.+
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999877654444443
No 104
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=4.5e-08 Score=73.99 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
...++..++|+.|+..+++++.++|+++.++..+|.+|+++|+|.+|+.++++++.++|+...+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999998887766554
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=2.2e-07 Score=92.63 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
..+-.+...+..|.++.|+..++..+...|+|+.++..++.++++.++..+|+..+++++.++|+.+-..+.+|.+|+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVG 135 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (414)
|++.+|+..+...+.-+|+|+..+..+++++..++.......-+.+..-..|
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999888776665544444333333
No 106
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.5e-08 Score=98.00 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----N---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P----~---~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
+...|..+|..+.|.+|+.+|..+|..-+ . -...+.|+|++|.+++.|++|+.+|++|+.+.|.++..|--+|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 45678899999999999999999984321 1 2456899999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
.+|..+|+++.|+..|.+++.+.|+|..+...++.+-
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999988888887665
No 107
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.76 E-value=1.9e-07 Score=102.18 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+...|..+...|++++|+..|.+++...|.+..+++.+|.++..+|++++|+..+++|+.++|++..+++.+|.++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEF 113 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (414)
|+|++|...++.++...|+++.+...-...
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999766554433
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=4.8e-07 Score=82.97 Aligned_cols=120 Identities=25% Similarity=0.222 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+|++.|+|..|+..+++.+...|.+ ..++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 5688999999999999999999999999998876 6899999999999999999999999999999974 569999
Q ss_pred HHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhh
Q 015029 76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQNA 121 (414)
Q Consensus 76 ~g~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~~~ 121 (414)
+|.+++.+.. ...|...|+..+...|+.+- +...+..+...+.++.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999887642 45899999999999998764 4445556665554443
No 109
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=3.5e-07 Score=85.58 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~ 75 (414)
++.+++.|..++..|+|..|...|..-|+..|++ +.+++-+|.+++.+|+|.+|...|..+++-.|. -++++|.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3568999999999999999999999999999987 689999999999999999999999999999886 4789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF 113 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (414)
+|.|+.++|+.++|...|+++.+.-|....+......+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999999999999988766554433
No 110
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.9e-08 Score=95.79 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS- 68 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~- 68 (414)
+++++-+|.+++...+.+.|+.+|+++|.++|+. ...+-.+|.-.++.|+|..|..+|..||.++|+
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 5678889999999999999999999999999986 345677899999999999999999999999997
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 69 ---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
+...|+++|.++.++|+..+|+..+..++.|++.--.+....++|...+.+-..+.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999987777777888887765544443
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.72 E-value=1.1e-07 Score=91.20 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~--P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
.....+...++++++...+.++.... +.++.+|..+|.++.+.|++++|+.++++|++++|++..+...++.++..+|
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 44567788999999999999977654 6788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR 132 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (414)
+++++.+.+.......|.++.+...++.+...++....++.|.....+
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999999999888888888888899999888888888877766443
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=5.6e-08 Score=72.38 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 46 ~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
+++.|+|++|+..|++++..+|++..+++.+|.||+..|++++|...|++++..+|+++.+...+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998877766654
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.69 E-value=5.4e-07 Score=75.29 Aligned_cols=96 Identities=21% Similarity=0.048 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK 76 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~ 76 (414)
+.+++.|..+-..|+.++|+.+|.+++...... ..+++.+|.+|..+|++++|+..++.++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975444 679999999999999999999999999999887 77888889
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 015029 77 ATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 77 g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
+.+++.+|++++|+..+..++-
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987763
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.68 E-value=1.7e-07 Score=93.41 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
+..+..+|.+++..|+|++|+..|.+||.++|+++.+|+++|.+|+.+|+|++|+.+|++++.++|++..++..++.|..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred Hc
Q 015029 82 KL 83 (414)
Q Consensus 82 ~l 83 (414)
.+
T Consensus 116 kl 117 (356)
T PLN03088 116 KI 117 (356)
T ss_pred HH
Confidence 66
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.67 E-value=1.3e-06 Score=82.27 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~---~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
++.++..|..++..|+|++|+..|.+++...|..+.+ .+.+|.+|+++++|.+|+..|++.+++.|++ ..++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 4567899999999999999999999999999998644 4899999999999999999999999999874 678999
Q ss_pred HHHHHHHcCC------------------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhh
Q 015029 76 KATACMKLEE------------------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 76 ~g~~~~~lg~------------------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~~~~ 122 (414)
+|.+++.+++ ...|+..|+..++..|+..- +...+..+...+.++..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999866651 25788999999999998764 44445555544444433
No 116
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=1.1e-07 Score=94.94 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 32 ~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a---~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
+|+++.+++++|.+|+++|+|++|+.+|++|++++|++..+ ||++|.||..+|++++|+.+|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777777776643 777777777777777777777777776
No 117
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.65 E-value=3.2e-07 Score=80.72 Aligned_cols=97 Identities=20% Similarity=0.302 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 015029 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (414)
Q Consensus 18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~----------~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~-- 85 (414)
|+.|.+.|...+..+|.+++.+++=|.+++.+. -+++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999999998873 46778999999999999999999999999998875
Q ss_pred ---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 86 ---------YETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 86 ---------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|+.|..+|+++...+|+|...+..+.-+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 78999999999999999998888877665
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.4e-07 Score=83.42 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~ 85 (414)
...+..++..|+-+.++....+++..+|.+..++...|..+++.|+|.+|+..+.+|.+++|.+.++|.-+|.+|.++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45677888899999999999998888999999998899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 86 YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
++.|...|.+++++.|.++.+...+.-..-+.+....
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 9999999999999999999988888776644444333
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=3.9e-07 Score=78.83 Aligned_cols=121 Identities=19% Similarity=0.086 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
|...+......+..+++..+...+...+...|+. ..+.+.+|.+++..|+|++|+..|+.++...++. ..+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3456677777778888888888888888888887 5677778888888888888888888888877553 458888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY 123 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 123 (414)
+|.+++..|+|++|+..++.. .-.+-.+.+...++++....+....+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888652 22222344555666666555554444
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=4.2e-07 Score=80.58 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=95.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK 82 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~ 82 (414)
+.+.+|..+.|..+...+...+...+.+ ..+++++|.++..+++|++|+..|.+|+.+.++ .+.+++++|.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4567888899999999998877776665 678899999999999999999999999999775 34699999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+|++++|+.+|++++.++|........+..+...+
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999888777777766533
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2e-06 Score=79.28 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~ 85 (414)
.-.|..+-..|+|++|+++|+..|+-+|.|...+-..-.+...+|+--+||+-....+..-+.+.+||..++.+|+.+|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 45688888999999999999999999999998888777777778888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029 86 YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ 119 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 119 (414)
|+.|..||+.++-+.|-++.+...++++.=.++.
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988888887744433
No 122
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.61 E-value=8.6e-07 Score=96.71 Aligned_cols=121 Identities=11% Similarity=-0.057 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH--HHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK--ATA 79 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~--g~~ 79 (414)
+...+.++...++.|+|..|+..|.++++.+|.++.+...++.++...|++++|+..+++++ +|.+..++..+ |.+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999996444488888888899999999999999 55444444444 779
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL 124 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 124 (414)
|..+|+|+.|++.|+++++++|+++.+...+..+....++...++
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 999999999999999999999999887776655554444433333
No 123
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.5e-07 Score=83.31 Aligned_cols=111 Identities=22% Similarity=0.128 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
|.-++.+|+.+-..|-+.-|.-.|+++|.+.|.-+.++..+|.-+...|+|+.|...|+..+++||.+--++.++|++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34467777777778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
--|+|..|.+.|.+..+-||+|+--..|+--
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999999999976666533
No 124
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.7e-07 Score=88.65 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+.+.+.++.+.++|..|+...+++|.++|+|..+++.||.||+.+++|+.|+.+|++|+.++|.|-.+...+..|-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred ChHHH-HHHHHHHHHh
Q 015029 85 EYETA-KVALEKGASL 99 (414)
Q Consensus 85 ~y~~A-~~~~~~a~~l 99 (414)
+|.+. ...|...+..
T Consensus 340 ~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 77655 4556555443
No 125
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.56 E-value=1.3e-06 Score=66.65 Aligned_cols=82 Identities=27% Similarity=0.329 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+++++|.+++..|++++|+..+.+++.+.|.+..+++.+|.++...+++++|..+|+.++.+.|.+......+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887776676666444
Q ss_pred hh
Q 015029 118 MQ 119 (414)
Q Consensus 118 ~~ 119 (414)
+.
T Consensus 82 ~~ 83 (100)
T cd00189 82 GK 83 (100)
T ss_pred Hh
Confidence 33
No 126
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=1.1e-06 Score=87.99 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~---~~~ra~~~~kl~~~~~Al~~~~~Ai~l~ 66 (414)
++.+.+.|..++..|+|++|+..|++||+++|++..+ |+|+|.||.++|++++|+.++++|+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999855 9999999999999999999999999984
No 127
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=1.8e-07 Score=93.63 Aligned_cols=104 Identities=26% Similarity=0.293 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl---~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
++.++..|+..|..+....||.+|.++++..|....+|.+|+.+++++ ++.-.|++|+..|++++|...+|||+++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999997 58889999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (414)
+++.+++|.+|+.+...+....|.|..
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999998888888886654
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9.6e-07 Score=94.02 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
+|+.++..|..+..+|+|++|-.+|-++++.++++ ...++.+|+.|++.|+++.|+.+|++++...|++.+...-+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 35667777888888888888888888888877777 66777778888888888888888888888888888887888877
Q ss_pred HHHcC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKEFVGL 116 (414)
Q Consensus 80 ~~~lg----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (414)
|...+ ..+.|...+.++++..|.|..+...++.+...
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 77775 55677777777777777777666666655533
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.48 E-value=2.8e-06 Score=69.67 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNL 109 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~ 109 (414)
+..++.+|..++..|++++|+..|..++..+|++ ..+++.+|.+++..|+|+.|...|+.++..+|++ ..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999875 6799999999999999999999999999999886 345556
Q ss_pred HHHHHHHHhhhhhhhhhHHH
Q 015029 110 IKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~ 129 (414)
++.+...++.......+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHhCChHHHHHHHHH
Confidence 66666444444444444333
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=98.45 E-value=5.9e-06 Score=82.87 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 015029 4 DLEKKAKEAFIDDY---FELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (414)
Q Consensus 4 ~~~~~g~~~~~~g~---y~~Ai~~y~~AL---~~~P~~~~~~~~ra~~~~kl---------~~~~~Al~~~~~Ai~l~p~ 68 (414)
.++.+|...+.++. ...|+.+|.+|+ .++|..+.+|..+|.||+.+ ..-.+|++.+.+|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45677777776665 457888999999 99999999999999999876 2456789999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++.+++.+|.++...++++.|...|++++.++|+...+....+.+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777776655
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=6.5e-06 Score=85.73 Aligned_cols=126 Identities=16% Similarity=0.085 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CCCC
Q 015029 3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--------NFTEAVADANRAIEL--EPSM 69 (414)
Q Consensus 3 e~~~~~g~~~~~~g~---y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--------~~~~Al~~~~~Ai~l--~p~~ 69 (414)
-+++.+|..++..++ +..|+.+|.+||+++|+++.+|..++.+|.... ++..+...+.+++.+ ++..
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 456778888887766 889999999999999999999998888886642 344566666676664 6667
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
+.+|.-+|..+...|++++|...|++++.++|+ ......++++....++...+..+...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888888889999999999999999984 56777778777666665555444433
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.44 E-value=4.8e-06 Score=74.08 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 34 ~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
..+.+++++|.+|...|++++|+.+|++++.+.|+. ..+++.+|.++..+|+|++|..+|.+++.++|.+......+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 457789999999999999999999999999987753 57999999999999999999999999999999998887777
Q ss_pred HHHHHHHh
Q 015029 111 KEFVGLLM 118 (414)
Q Consensus 111 ~~~~~~~~ 118 (414)
+.+...++
T Consensus 113 g~~~~~~g 120 (172)
T PRK02603 113 AVIYHKRG 120 (172)
T ss_pred HHHHHHcC
Confidence 77764443
No 133
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=2.2e-06 Score=84.77 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~----~~a~~~~g~~~ 80 (414)
+...|..+...|++++|+..|.+++.++|+++.++..+|.+|+..|++++|+..+.+++.+.|.. ...|+.+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999987643 24567899999
Q ss_pred HHcCChHHHHHHHHHHHHhCC
Q 015029 81 MKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p 101 (414)
..+|++++|...|++++...|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999876666
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=2.4e-06 Score=85.55 Aligned_cols=97 Identities=24% Similarity=0.313 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y 86 (414)
..+..++..++..+|++.+.++|...|.+..++...|..+++.++|+.|+..+++|+.+.|.....|+.++.+|..+|+|
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 35666667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 015029 87 ETAKVALEKGASLAPGD 103 (414)
Q Consensus 87 ~~A~~~~~~a~~l~p~~ 103 (414)
+.|+..+..+--+-+.+
T Consensus 285 e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 285 ENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHhcCcCCCCcc
Confidence 88887776554443333
No 135
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=2.6e-07 Score=70.78 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 34 NSAELFADRAQASIKLQNFTEAVADANRAIELE----P---SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 34 ~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p---~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
+-+.++.++|.+|..+|+|++|+.+|++|+.+. + ....+++++|.++..+|++++|+..|++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345688899999999999999999999999772 1 23668889999999999999999999998865
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=4.9e-06 Score=83.10 Aligned_cols=111 Identities=23% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+-..+..++..+++.+|++.+.+++.+.|+.+.+.+++|.+|++.|++.+|+..++..+..+|+++..|..+|.+|..+|
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
+-.+|...+.....+...-..+...+..+.+
T Consensus 423 ~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 423 NRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999998888876666666666663
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1.5e-05 Score=68.86 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
..+..|..++..|+|++|+..|..++...|+. ..+.+.+|.+++..|+|++|+..++. +.-.+-.+.++..+|.+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 45778999999999999999999999988665 46888999999999999999999966 333344677899999999
Q ss_pred HHcCChHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGA 97 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~ 97 (414)
...|++++|...|++++
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=8.3e-06 Score=75.30 Aligned_cols=112 Identities=16% Similarity=0.060 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~ 85 (414)
+++--.+-.+|.--+||+.+..-|+..+.+.++|..+|..|+..|+|++|.-|++.++-+.|.++..+.|+|.++|-+|.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 33444556678888999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 86 ---YETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 86 ---y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+..|..+|.++++++|.+......+-.|-..+
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 77899999999999997776666665555333
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=5.8e-06 Score=89.91 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~------------ 70 (414)
+.+......+...+++++|++++..++...|+...+|+.+|..|+..+++.+|... .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 45666777888999999999999999999999999999999999999988877655 5555554444
Q ss_pred -------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029 71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY 128 (414)
Q Consensus 71 -------~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (414)
.|+|.+|.||-.+|++++|...|+++++++|.|..+...++-..... ...++..+..
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 89999999999999999999999999999999999888887766555 4444444433
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.1e-06 Score=91.28 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
|.+.+..|...+.+++|.+|..+++..+.++|-....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34445556666778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
.+++-.+|...+..+++.+..+-.+.....
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 888888888888888888876665444433
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=82.17 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
-|-+++-+|.+.|.|+.|+..+..||.++|+...+|..+|.+|+.+|+|.+|+..|.+|+.++|++....-.|..+-..+
T Consensus 117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred CChH---HHHHHHHHHHHh
Q 015029 84 EEYE---TAKVALEKGASL 99 (414)
Q Consensus 84 g~y~---~A~~~~~~a~~l 99 (414)
++-. .+...++.+..+
T Consensus 197 ~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 197 NEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred cCCCcccccccchhhhhhc
Confidence 7765 444445544433
No 142
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.39 E-value=2e-05 Score=80.11 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATAC 80 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-~a~~~~g~~~ 80 (414)
+.....+|..++..|+|..|...+.++....|+....+...|.++..+|+++.|...+.++.+..|+.. .+...++.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 345678899999999999999999999999999888899999999999999999999999999999875 4666679999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
...|+++.|...++..++..|+++.+...+..+....+.-......
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999998888888655554444333
No 143
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1e-06 Score=83.79 Aligned_cols=103 Identities=15% Similarity=0.260 Sum_probs=57.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHH
Q 015029 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p---~~~~a~~~~g~~~~~lg~y~~ 88 (414)
+|..++.+-|+.+|.+.|++.-.++++|+|+|.|.+.-++|+-++.+|.+|+...- .-...||++|.+....|++..
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 34444444444444444444444455666666666666666666666666665532 134556666666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 89 AKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|.+||+-++..|+++.+....++-+.
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHH
Confidence 66666666666666665555554444
No 144
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.36 E-value=9e-06 Score=88.86 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+...|..+...|+|++|+++|.++++.+|+++.++..++.+|...+++++|+..+++++.++|.+... ..++.++..++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 33447788888999999999999999999999999888899999999999999999999999985444 44555666677
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
++.+|+..|++++.++|++..+...+..+...+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 777799999999999999888766655544333
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.33 E-value=6.9e-06 Score=87.08 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+...|.++-..|+.++|+...-.|-.++|.+...|..++....++|++.+|+-||.+||.++|.+.+..++++..|.+
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCC
Q 015029 83 LEEYETAKVALEKGASLAP 101 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p 101 (414)
+|++..|+..|.+.+.++|
T Consensus 254 ~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999
No 146
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.5e-06 Score=82.75 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+..++.++-..+++++|+++|..+++++|.|.++..-.|.-|+.-++.+-|+++|.+.+.+.-.+++.+.++|.||+..+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 34567777778888888888888888888888888778888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhCC
Q 015029 85 EYETAKVALEKGASLAP 101 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p 101 (414)
+|+-++-+|++++....
T Consensus 373 Q~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTAT 389 (478)
T ss_pred chhhhHHHHHHHHhhcc
Confidence 88888888888887765
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=1.1e-05 Score=79.71 Aligned_cols=100 Identities=18% Similarity=0.095 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA-------------------------------------DRAQA 45 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~-------------------------------------~ra~~ 45 (414)
+....+|..++..|++++|+..+.+++..+|++..++. .+|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 34566788999999999999999999999888865443 33445
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 46 ~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
+..+|++++|+..+++++.++|.+..++..+|.+|+..|++++|..+|++++.+.|.
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 555566666666666666666666666666666666666666666666666666553
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=98.31 E-value=4.6e-06 Score=83.58 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
.+-.+|+++-.+|++++|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+++..|+.++|.+.+++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCH
Q 015029 96 GASLAPGDS 104 (414)
Q Consensus 96 a~~l~p~~~ 104 (414)
+++++|.-.
T Consensus 398 alrLsP~~~ 406 (458)
T PRK11906 398 SLQLEPRRR 406 (458)
T ss_pred HhccCchhh
Confidence 999999654
No 149
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.28 E-value=2e-05 Score=80.13 Aligned_cols=122 Identities=8% Similarity=-0.064 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA 79 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~--~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~--~a~~~~g~~ 79 (414)
-....|..+...|++++|+..+.++++..|++.... ..+...++..++...++..++++++.+|+++ ..+..+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 456678899999999999999999999999987532 3344444556889999999999999999999 888899999
Q ss_pred HHHcCChHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029 80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
++++|+|++|..+|+ .++..+|++..+. .++.+...++........
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHHH
Confidence 999999999999999 6788889777644 788888666665555443
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=9.1e-06 Score=86.76 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATA 79 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~ 79 (414)
.+...++-+|-.|+|..+..++..++...-.. +..++.+|.+|..+|+|++|..+|-.++..++++ ..+++.+|+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 45677899999999999999999999876444 4569999999999999999999999999999987 8899999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
|...|+++.|..+|++++...|++......++.++...
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 99999999999999999999999998888877766443
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=1.6e-05 Score=82.85 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 18 FELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 18 y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
...|.....+++.+ +|.++.+|..+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|.+.|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666676664 777888999999999999999999999999999999 588999999999999999999999999
Q ss_pred HHHhCCCCHHHH
Q 015029 96 GASLAPGDSRFT 107 (414)
Q Consensus 96 a~~l~p~~~~~~ 107 (414)
++.++|.++...
T Consensus 479 A~~L~P~~pt~~ 490 (517)
T PRK10153 479 AFNLRPGENTLY 490 (517)
T ss_pred HHhcCCCCchHH
Confidence 999999998643
No 152
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.24 E-value=1.4e-05 Score=82.08 Aligned_cols=117 Identities=10% Similarity=0.056 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.++.++...|..++|...+...+.+|...|...+.+.-.|..+..+|+-++|..+...+++.|+...-+|.-+|+++-.-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 120 (414)
.+|++|+.||..|+.++|+|.++..-+.-++.+++.-
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888877777655443
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.1e-05 Score=72.69 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHH
Q 015029 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKV 91 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~---y~~A~~ 91 (414)
..+.+..+.-+..-|+.+|+|+.-|..+|.+|+.++++..|+..|.+|++|.|+++..+.-+|.+++...+ -.+|..
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34577888889999999999999999999999999999999999999999999999999999999887664 568899
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 015029 92 ALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
.|.+++.+||.|......++...
T Consensus 215 ll~~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999998888766
No 154
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=8.7e-06 Score=82.70 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
.+..|..+++.|+..+|+-.|..|++.+|.++++|..+|.++...++=..|+..+.+|++|+|++..++..||++|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCC
Q 015029 85 EYETAKVALEKGASLAP 101 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p 101 (414)
.=.+|..+|..=+...|
T Consensus 368 ~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKP 384 (579)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999987666554
No 155
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.8e-06 Score=82.12 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.++.-|.-++.-|++.+|.++|.++..++|....+|+..|+.|...+..++|+.+|..|-++-|......+.+|.=|.++
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+++..|..+|.+++.+.|.|+-+...++-+.
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 9999999999999999999997666655433
No 156
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=3.9e-06 Score=64.22 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP----NSAELFADRAQASIKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~---~P----~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~ 66 (414)
+..+...|..++..|+|++|+.+|.+++.+ .+ .-+.++.++|.+|..+|++++|+..+++|+.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 567889999999999999999999999976 22 226789999999999999999999999999863
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.1e-05 Score=75.11 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH---------------------------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEA--------------------------- 55 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~A--------------------------- 55 (414)
+.+.-+|+.+...|+.++|+-+|..|+.+.|....+|..+-.||+..|++.+|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF 414 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec
Confidence 35667788888888888888888888888888777777777777777766654
Q ss_pred ---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029 56 ---------VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 56 ---------l~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
...+++++.++|....|...+|..+...|++.+++..+++.+...|++. +...++++-.+.+.-+..+..
T Consensus 415 ~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred cCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHH
Confidence 4444445555556666667777777777777777777777776666544 666677776666666666665
Q ss_pred HHHHHh
Q 015029 127 NYELLR 132 (414)
Q Consensus 127 ~~~~~~ 132 (414)
.+..+|
T Consensus 494 y~~ALr 499 (564)
T KOG1174|consen 494 YYKALR 499 (564)
T ss_pred HHHHHh
Confidence 555443
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=0.00011 Score=74.53 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADR-AQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATA 79 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~r-a~~~~kl~~~~~Al~~~~~Ai~l~p~~~~-a~~~~g~~ 79 (414)
+......|..++..|+|+.|.....++-...+. +.+++.+ +.+..++|+++.|...+.+|.+.+|+... ..+..+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345678899999999999999887776655433 4444444 55558999999999999999999998754 44566999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
+...|+++.|...+++..+.+|+++.+...+..++...++-..
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999998888855544333
No 159
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.16 E-value=4.4e-05 Score=78.72 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP 67 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------~p 67 (414)
.+...|..++.+|+|+.|+..+..||+. .|.-...+..+|..|..+++|.+|+..|++|+.+ +|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455889999999999999999999998 5555666667999999999999999999999977 23
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 015029 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA-----PGDSRFTNLIKEFV 114 (414)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~-----p~~~~~~~~l~~~~ 114 (414)
.-...+.++|.+|+..|+|++|..+|++++++- ...+.+...+..+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 446689999999999999999999999998864 33455555544444
No 160
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=5e-05 Score=72.44 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
+-..-++|-...+|++||..-.+.+.+.+.. +.+|+.+|..++...+.+.|+..+.+|+.-+|.+..|-..+|.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 3445566777777888888877777776665 56777788877777888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGD-SRFTNLIKEFVGLLMQNAVYLCWNY 128 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (414)
+...|+|..|++.++.+++.||+- +.+...+..|+..+++.+....|+.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888888888888777763 3455556666666665555444443
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.16 E-value=4.6e-05 Score=79.16 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~ 106 (414)
+++.+|++|..+|++++|+..+++||...|..++.|+.+|.+|.++|++.+|..+++.+..+|..|.-+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 445556666666666666666666666666666666666666666666666666666666666655543
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=4.5e-05 Score=72.78 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKAYWRKATA 79 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-----~~~a~~~~g~~ 79 (414)
+.+.|..+...|=|+.|-..|...++..-.-..++-.+..+|....+|++|+..+++...+.+. ....|..+|..
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 3444555555555555555555544433333445555555555555555555555555555443 23344445555
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF 113 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (414)
+....+++.|+..+.++++-+|.+..+...++++
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 5555555555555555555555544444444333
No 163
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.6e-05 Score=77.84 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
|+.++-.|..+|..++|..|+.+-.++|+.+|++..+|+-.|.+++.+++.++|+-.|..|+.+.|...+.|--+..+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
..|++.+|...-..+.+.-|.+......+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 99999999988888888777766555444
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.12 E-value=9.4e-05 Score=65.55 Aligned_cols=101 Identities=23% Similarity=0.237 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~ 80 (414)
.....|+.+...|+|.+|..+|.+++. +..+++..+..++++.+.++++..|...++...+-+|. .+..++.+|.+|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 356789999999999999999999998 56788999999999999999999999999999999986 678899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
...|+|.+|...|+.++..-|+-.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999988643
No 165
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.11 E-value=9e-05 Score=75.03 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.....|..+...|++++|...+.+++.. +.++.+...++.+ ..+++.+++..++..++.+|+++..++.+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 3456788999999999999999999995 4455544444443 459999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY 128 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (414)
++|++|...|++++.+.|++.. ...+..+...+++.......+.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999998765 3467777766666555544333
No 166
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.08 E-value=5.1e-05 Score=78.25 Aligned_cols=98 Identities=27% Similarity=0.268 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------ 67 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------ 67 (414)
+..+...|..+...++|.+|+.+|.+||.+ +|.-+..+.++|.+|.+.|+|.+|..+|++|+++-.
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 344556899999999999999999999987 344478899999999999999999999999998732
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 68 --SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 68 --~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.-...+..++.++..+++|++|...|++++++
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23556777888888899999999888888765
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.06 E-value=1.8e-05 Score=69.01 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 32 ~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
.++.-...+..|.-++..|+|++|...|..++.+++.+++.++-+|.|+..+++|+.|+.+|..+..++++|+......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34446788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhh
Q 015029 112 EFVGLLMQNAVYLC 125 (414)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (414)
.|.-.++....+..
T Consensus 113 qC~l~l~~~~~A~~ 126 (165)
T PRK15331 113 QCQLLMRKAAKARQ 126 (165)
T ss_pred HHHHHhCCHHHHHH
Confidence 99977777666543
No 168
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=5.8e-05 Score=82.28 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL----------------- 65 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l----------------- 65 (414)
..++..|.+|-+.|++++|+..|+++|+.+|+|+.++.++|..|... ++++|+..+.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999 999999999999866
Q ss_pred ---CCCCHHHHHH--------HH------------HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 66 ---EPSMSKAYWR--------KA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 66 ---~p~~~~a~~~--------~g------------~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
+|.+...+++ ++ .+|..+++|++++..|+.+++++|+|..++..+..|.+
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2332222111 23 68888999999999999999999999999999999983
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.05 E-value=0.00022 Score=66.45 Aligned_cols=118 Identities=20% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~ 75 (414)
+..+++.|...+..|+|.+|+..|..+....|.+ ..+.+.++.++++.++|.+|+..+++-+++.|.+ .-++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 5679999999999999999999999999988876 5788999999999999999999999999999864 458888
Q ss_pred HHHHHHHcCC--------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhh
Q 015029 76 KATACMKLEE--------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQ 119 (414)
Q Consensus 76 ~g~~~~~lg~--------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~ 119 (414)
+|.+++..=+ -..|...|+..+..-|+.+- +...+..+...+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence 9999776443 25788888889999998654 33334444433433
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=8.5e-06 Score=63.42 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~A 62 (414)
.+...|.++|..|+|++|+..+++ +..++.+..+++.+|.||+++|+|++|+..+++|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 356689999999999999999999 8888888888889999999999999999999875
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.02 E-value=0.00017 Score=62.07 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN 60 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------~~~~~~ra~~~~kl~~~~~Al~~~~ 60 (414)
+.+...|..+...++...++..|.+++.+.... ..++..++.++...|++++|+..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 345667788888999999999999999984332 4566677888888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 61 ~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
+++.++|.+-.+|..+-.+|..+|++..|+..|+++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=2.6e-05 Score=69.69 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a 72 (414)
+.++|.++.+.+.++.||..+++||+++|....++..||.+|.++..|++|+.||.+.++++|....+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999987543
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.99 E-value=0.00013 Score=69.52 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=78.1
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHH
Q 015029 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTN 108 (414)
Q Consensus 36 ~~~~~~ra~~~-~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~ 108 (414)
....+..|..+ ++.|+|++|+..|+..+...|+. +.++|.+|.+|+..|+|++|+..|++++...|+++ .+..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888887 56799999999999999999987 68999999999999999999999999999998864 4555
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhh
Q 015029 109 LIKEFVGLLMQNAVYLCWNYELLRRV 134 (414)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (414)
.++.+...++....+...+..+.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55666655555555555554444433
No 174
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.98 E-value=2.4e-05 Score=83.74 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+..+|-.+...+++-.|+..|+.||+.+|.+..++..+|.+|...|+|.-|+..|.+|..++|.+.-+.|..+.....+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 34568888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|+|.+|+..+...+........++..+..+.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999987766555444444444444
No 175
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.98 E-value=0.00011 Score=77.06 Aligned_cols=118 Identities=18% Similarity=0.067 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+...|..+...++-++|...+.+|-.+.|-.+..|+.+|.++...|.+.+|...|..|+.++|+++...--+|.++...|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 44667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 85 EYETAKV--ALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 85 ~y~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
+-..|.. .+..++++||.|..++..++.+-+.++....
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 9887777 9999999999999999999999866665543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00014 Score=60.79 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~---~~~~~~~l 110 (414)
.+++++|.+|-.+|+.++|+..|++|+..+.. ...+++.+|.+|..+|++++|...|+.++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 47899999999999999999999999998654 3679999999999999999999999999999888 66666666
Q ss_pred HHHHHHHhhhhhhhhhH
Q 015029 111 KEFVGLLMQNAVYLCWN 127 (414)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (414)
.-+...++.......|.
T Consensus 82 Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 66654455544444443
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=3.4e-05 Score=80.34 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=93.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------------HHHHHHHHccCHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFA----------------------------DRAQASIKLQNFTEAVADA 59 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~----------------------------~ra~~~~kl~~~~~Al~~~ 59 (414)
...+|...|+..+|-....+-++ .|+++.+|+ ..|..++..++|.++.+++
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 44555666666666655555555 333333333 3333334558999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 60 NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 60 ~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
+..++++|.....||++|.|..+++++..|..+|..++.++|++.+....+..++..++++.+..+-..+
T Consensus 509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999777777666544433
No 178
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00014 Score=72.03 Aligned_cols=111 Identities=17% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-------------------------------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN------------------------------- 51 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~------------------------------- 51 (414)
+-+.+.+++|-...+..+||++|.++..+-|+++.++..+|..|-+.|+
T Consensus 559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555444433331
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 52 ---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF 113 (414)
Q Consensus 52 ---~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (414)
+++|+.+|++|--+.|+..+-.+..+.|+.+.|+|..|...|+...+..|.|-.+...+-++
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 22344444444444444444444455555555555555555555555555554444444333
No 179
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.95 E-value=0.00027 Score=73.45 Aligned_cols=96 Identities=20% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
++-.+..+-..|+|++|+.+.++||...|..+++|+.+|.+|-+.|++.+|...++.|-.+|..+.-..-..+..+++.|
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 45567888899999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred ChHHHHHHHHHHHHhC
Q 015029 85 EYETAKVALEKGASLA 100 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~ 100 (414)
++++|...+....+-+
T Consensus 277 ~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 277 RIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHhhcCCC
Confidence 9999999998776655
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.94 E-value=9.6e-06 Score=51.92 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (414)
Q Consensus 59 ~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~ 90 (414)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.94 E-value=9.4e-05 Score=76.22 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+.+.-.|..+...|+-++|..+...++..++.+..+|..+|..+...++|.+|+.||..|+.++|+|...+.-++....+
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+++|+.....-.+.+++.|.....+..++.++-.+
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999888889999998776555555554333
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=2.4e-05 Score=53.09 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
.++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456667777777777777777777777777777777766664
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=0.00013 Score=78.34 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
|+......|..+...++|++||++..++|+.+|+|..+++-+|.++..++. .++|-..|-.|..++|++..||-.+|..
T Consensus 1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 455667789999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHH---cCChHHHHHHHHHHHHhCCCCH
Q 015029 80 CMK---LEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 80 ~~~---lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
|.+ .-.++++..+|++++.+.++..
T Consensus 81 ye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 887 4568899999999988877654
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.00055 Score=62.67 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~-----------~~~~Al~~~~~Ai~l~p~ 68 (414)
+.++..|.+++..|+|..|+..|++.+...|++ +.+++.+|.+++.+. ...+|+..|+..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999999887 578999999987763 345899999999999997
Q ss_pred CH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 69 MS-----------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 69 ~~-----------------~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
.. .--+..|..|++.|.|..|..-|+.+++.-|+.......+..
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 42 224557889999999999999999999999998765554433
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.89 E-value=2.2e-05 Score=49.95 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
.+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555666666666666666666666655554
No 186
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.89 E-value=0.00021 Score=73.75 Aligned_cols=115 Identities=23% Similarity=0.195 Sum_probs=88.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHHccCHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNS---------------------------------AELFADRAQASIKLQNFTE 54 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------------------------~~~~~~ra~~~~kl~~~~~ 54 (414)
.+...+..|+...|...+..|++.+|++ ...|+.-+....-+++.++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHH
Confidence 3445555566666666666666666665 2344444455555678999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 55 Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
|++.++.++...|++.+.|+.+|+++..+++.+.|...|..++++.|...-+...+.++++..++-.+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999888888888866554333
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=8.4e-05 Score=71.63 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 015029 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (414)
Q Consensus 2 Ae~~~~~g~~~~~~-g~y~~Ai~~y~~AL~~~P--~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------ 68 (414)
|..+...|..+... |++++|+.+|.+|+.... +. ..++.+.|.++.++++|++|+..|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 45677788888888 999999999999999722 12 568889999999999999999999999976422
Q ss_pred CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 69 MS-KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 69 ~~-~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
.. ..++..++|++.+|++..|...|++....+|.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12 45678899999999999999999999999885
No 188
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=4e-05 Score=48.50 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
++++.+|.+++.+|+|++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666777777777777777777776666654
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.84 E-value=0.00034 Score=72.36 Aligned_cols=111 Identities=16% Similarity=0.048 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
-++..++.....++.++|++++.++|+..|+...+|+.+|+++..+++.+.|...|..-++.-|..+..|..++.+-...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 34556667777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|..-.|...|++++..+|.+..+....-+++
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 9999999999999999999986544443444
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=9.1e-05 Score=67.11 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~ 70 (414)
|++.+.-.|.-+...|+|+.|.+.|+..++++|..--++.|||.+++--|+|.-|.+++.+-..-||.++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 6777888899999999999999999999999999999999999999999999999999998888877643
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00042 Score=69.56 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=94.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
+-..++|+.|+.+|.+..+.+|+ +...++.+|+..++-.+|++.+.+++...|.+...+...|..|...++|+.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 34467899999999998888876 455688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029 92 ALEKGASLAPGDSRFTNLIKEFVGLLMQ 119 (414)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 119 (414)
..+++..+.|++...+..|++|+..+++
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999955544
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.00098 Score=62.83 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANRA 62 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~------------------~~~Al~~~~~A 62 (414)
.....|.++++.++|++|+..|++.++..|++ +.+++.+|.+++.++. -.+|+..|+..
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 45778999999999999999999999998887 5789999999766541 25788999999
Q ss_pred HHhCCCCH---HH--------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHhhh
Q 015029 63 IELEPSMS---KA--------------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL---IKEFVGLLMQN 120 (414)
Q Consensus 63 i~l~p~~~---~a--------------~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~---l~~~~~~~~~~ 120 (414)
++.-|+.. +| -+..|.-|++.|.|..|+.-|+.++..-|+-+..... +.++...++..
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 99999742 22 3346667999999999999999999999886654444 44444333333
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.79 E-value=4.2e-05 Score=48.58 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~ 68 (414)
+.+|+++|.+|+.+++|++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356788888888888888888888888888875
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.78 E-value=3.1e-05 Score=49.55 Aligned_cols=33 Identities=33% Similarity=0.615 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015029 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAV 56 (414)
Q Consensus 24 ~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al 56 (414)
.|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 388999999999999999999999999999986
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00028 Score=66.76 Aligned_cols=86 Identities=20% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~ 90 (414)
.+.+..+|..||+.++.-.+.+|.+-..+..+|.||+...+|..|..||++...+.|......++.++.++..+.|.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 015029 91 VALEKG 96 (414)
Q Consensus 91 ~~~~~a 96 (414)
+.....
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 877654
No 196
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.77 E-value=5.3e-05 Score=72.74 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=61.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
+-.+|+-|++.|.|++|+.||.+++.++|.++-.|.++|.+|+++.+|..|...|..++.|+-.--
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~ 165 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV 165 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 456899999999999999999999999999999999999999999999999999999998886433
No 197
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0014 Score=62.31 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--------------------------
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA-------------------------- 57 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~-------------------------- 57 (414)
..+..+..+...|++.+|...|..++...|.+..+...++.||+..|+.+.|..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999998876522
Q ss_pred --------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Q 015029 58 --------DANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKEFVGLLM 118 (414)
Q Consensus 58 --------~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p--~~~~~~~~l~~~~~~~~ 118 (414)
++.+.+..+|++..+.+.+|..|...|+++.|.+.+-..++.+- .|...+..+-.+-...+
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333445788999999999999999999999999888777654 34555555555554443
No 198
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.71 E-value=0.0011 Score=54.44 Aligned_cols=94 Identities=23% Similarity=0.220 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------h
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIKLQNFTEAVADANRAIE-------L 65 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~------------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-------l 65 (414)
....|...+..|-|++|...|.+|...... ++.++..++.++.++|+|++++..+++++. |
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345677788899999999999999987422 267888899999999999999888888884 3
Q ss_pred CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 66 EPS----MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 66 ~p~----~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
+.+ ...+.|.+|+++..+|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444 356889999999999999999999998754
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.70 E-value=0.00023 Score=68.85 Aligned_cols=115 Identities=16% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.-.-.+++..++++.|...+..+-+.+.++......-|.+.+..| .+.+|...|+......+..+..+..+|.|+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 345567788888888888888776666554433333333333444 588888888887766667788888888888888
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029 84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 120 (414)
|+|++|...+.+++..+|.++.+...+.-|...++..
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888887777776666555554
No 200
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00038 Score=67.33 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---------------------------------
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE--------------------------------- 54 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~--------------------------------- 54 (414)
.|.++|..|+|++|+..|+-+...+--+..+..++|-|++-+|.|.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 57899999999999999988877655566778888888877775555
Q ss_pred ---------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 55 ---------------------------AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 55 ---------------------------Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
|+..|.+++.-+|.....-.++|.||+.+.-|+-+.+.+.-.++..|+..
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 45555555555555555555666667777777666666666666666554
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.66 E-value=0.00011 Score=49.73 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
+.+++.+|.+|..+|++++|...|+++++.+|+|..+...+.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999988877654
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.65 E-value=0.0005 Score=66.52 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=84.2
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-H
Q 015029 11 EAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-E 87 (414)
Q Consensus 11 ~~~~~g--~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y-~ 87 (414)
..+..| .+.+|.-.|++..+..+.++..+..+|.|++.+|+|++|...+..|+..+|.++.+..+++.+...+|+- +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 334444 6999999999977777888999999999999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 88 TAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
.+.+.+.+....+|.++.+.....+
T Consensus 254 ~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 6778888888999999876655543
No 203
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.65 E-value=0.00013 Score=46.04 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~ 69 (414)
.+++.+|.+|+.+|+|++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777653
No 204
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.61 E-value=0.00029 Score=55.94 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=63.0
Q ss_pred ccccccCCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC------C---------CCeeeecccccccccCCcceEE
Q 015029 215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP------G---------EEAYHFQPRLFGKIIPAKCRYE 278 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~------~---------~~~y~~~~~L~~~I~p~~s~~~ 278 (414)
|+||+.+++.+.|.+.++|+.++++.|.+.++ .|.|+.... + ...|.-.+.|-..|+++..+-.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 67999999999999999999999999999874 788876421 1 1146777889999999988888
Q ss_pred EeCcEEEEEEee
Q 015029 279 VLSTKVEIRLAK 290 (414)
Q Consensus 279 v~~~kiei~L~K 290 (414)
....-+.|+|-|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 888888998865
No 205
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.60 E-value=0.00039 Score=49.17 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
+.+|.+|++++++|+|..|..+++.+++++|+|.++......++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998888777763
No 206
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=9.7e-05 Score=71.35 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP---NS----------------AELFADRAQASIKLQNFTEAVADANRAI 63 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P---~~----------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai 63 (414)
+..++.|+..|+.++|..|+.-|.+++..-. .+ ...+.+.+.+-++++.+..|+..+..++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3456778899999999999999999887421 11 3456778899999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+.++....+|||++.++..+.+++.|++.++.+....|.+..+...+.......
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999888877766433
No 207
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0007 Score=65.53 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=73.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~ 88 (414)
..+....||..|+.++.-.+..+... ...-.-+|.|++.+|+|++|+..|..+...+....+.+.++|.|+|-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 46778899999999998887654332 24556689999999999999999999999887889999999999999999999
Q ss_pred HHHHHHHH
Q 015029 89 AKVALEKG 96 (414)
Q Consensus 89 A~~~~~~a 96 (414)
|.....++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98876653
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.53 E-value=0.00066 Score=58.05 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (414)
Q Consensus 35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~ 106 (414)
.+..++..|...++.|+|.+|+..|+.+....|. -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3678899999999999999999999999999885 57899999999999999999999999999999998863
No 209
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00045 Score=59.86 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=69.9
Q ss_pred CccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---------------CCeeeecccccccccCCcceEE
Q 015029 214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYE 278 (414)
Q Consensus 214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~y~~~~~L~~~I~p~~s~~~ 278 (414)
+.||.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+ ...|.-.+.|...|+|+..+-+
T Consensus 41 P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~ 120 (146)
T COG0071 41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAK 120 (146)
T ss_pred CcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeE
Confidence 3589999999999999999999999999999999999976543 1247788899999999988888
Q ss_pred EeCcEEEEEEeeCCC
Q 015029 279 VLSTKVEIRLAKAEP 293 (414)
Q Consensus 279 v~~~kiei~L~K~~~ 293 (414)
....-+.|.|.|..+
T Consensus 121 ~~nGvL~I~lpk~~~ 135 (146)
T COG0071 121 YKNGLLTVTLPKAEP 135 (146)
T ss_pred eeCcEEEEEEecccc
Confidence 888899999999764
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.00029 Score=67.90 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=38.9
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHH
Q 015029 14 IDDYFELAYDLYSQAIEIS--PNS----AELFADRAQASIKL-QNFTEAVADANRAIELEP--S----MSKAYWRKATAC 80 (414)
Q Consensus 14 ~~g~y~~Ai~~y~~AL~~~--P~~----~~~~~~ra~~~~kl-~~~~~Al~~~~~Ai~l~p--~----~~~a~~~~g~~~ 80 (414)
+..++.+|+.+|.+|+.+. -++ +.++.++|.+|... +++++|+..|++|+.+-. + ...++...|.++
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 3335555555555555431 111 34455555555554 555555555555554421 0 123444555555
Q ss_pred HHcCChHHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGAS 98 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~ 98 (414)
..+|+|++|+..|++...
T Consensus 166 ~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHTT-HHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.49 E-value=0.00074 Score=59.72 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN 60 (414)
Q Consensus 2 Ae~~~~~g~~~~~~----------g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-----------~~~~Al~~~~ 60 (414)
++.+.+-|.+++.. .-+++|+.-|.+||.++|+...+++++|.+|..++ .|++|..+|+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34555566655543 34788999999999999999999999999999875 4888999999
Q ss_pred HHHHhCCCCH
Q 015029 61 RAIELEPSMS 70 (414)
Q Consensus 61 ~Ai~l~p~~~ 70 (414)
+|+.++|.+.
T Consensus 105 kAv~~~P~ne 114 (186)
T PF06552_consen 105 KAVDEDPNNE 114 (186)
T ss_dssp HHHHH-TT-H
T ss_pred HHHhcCCCcH
Confidence 9999999875
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0019 Score=60.79 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=78.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 015029 39 FADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKE 112 (414)
Q Consensus 39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~ 112 (414)
+++-|.-|++.|+|..|..-|..-+...|+ .+.|+|-||.++|.+|+|++|...|..+.+-.|+++ +....++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 789999999999999999999999999997 578999999999999999999999999999888765 45666777
Q ss_pred HHHHHhhhhhhhhhHHHHH
Q 015029 113 FVGLLMQNAVYLCWNYELL 131 (414)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (414)
|...+++...+...+.++.
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 7766666666555544443
No 213
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0038 Score=64.07 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------------------ 67 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------------------ 67 (414)
+.++.++|+.+..++|+..++ -.++.+..++..+|+.++++++|++|+..|+..++-+.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 35566677899999999999999999999999864432
Q ss_pred -------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHH-------HHHHHHHHHHHHhh
Q 015029 68 -------------SMSKAYWRKATACMKLEEYETAKVALEKGASLA--------PGDSR-------FTNLIKEFVGLLMQ 119 (414)
Q Consensus 68 -------------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~--------p~~~~-------~~~~l~~~~~~~~~ 119 (414)
+....+|+.|.++...|+|.+|++.++.++++. ..+.. ++..+.-+..++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 145678999999999999999999999994431 12222 34444555555566
Q ss_pred hhhhhhhHH
Q 015029 120 NAVYLCWNY 128 (414)
Q Consensus 120 ~~~~~~~~~ 128 (414)
.+.....+.
T Consensus 240 t~ea~~iy~ 248 (652)
T KOG2376|consen 240 TAEASSIYV 248 (652)
T ss_pred hHHHHHHHH
Confidence 666655333
No 214
>PRK10941 hypothetical protein; Provisional
Probab=97.41 E-value=0.0018 Score=61.77 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
...+.++=.+|++.++++.|+++.+.++.++|+++.-+.-+|.+|+++|.+..|...|+..++..|+++........+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3566778889999999999999999999999999999999999999999999999999999999999997665555544
No 215
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.0047 Score=66.17 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
++..+---.+...+++.+|+...++.++..|+..-+....|..++++|++++|..+++..-.+.+++-..+--+-.||..
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 33344445677889999999999999999999999999999999999999999988888878888888888889999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++++++|..+|+++...+|+ ......+=.+.
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence 99999999999999999999 44444433333
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.00043 Score=68.12 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CCHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE----P--SMSKA 72 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p--~~~~a 72 (414)
-++...|..+++.|++...+..|..||+..-.+ ..+|.++|.+|+.+++|++|+.+-..=+.+. . .-.++
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 356788999999999999999999999987666 4688999999999999999998765555443 2 24567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 73 YWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
--++|..+..+|.|++|+.|+.+-+.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd 123 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLD 123 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhH
Confidence 78899999999999999999887443
No 217
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00054 Score=64.93 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC----------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----PS---------- 68 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p~---------- 68 (414)
....+.|..+|+.|+|+.|++.|+.|++...-++.+-+++|.||++.++|..|+......|+.+ |.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 4467789999999999999999999999998889999999999999999999999988888763 31
Q ss_pred ---------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 69 ---------------MSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 69 ---------------~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
..+|+...+-++|+.++|+.|.+.+..
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 234666778889999999998887753
No 218
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.28 E-value=0.0015 Score=64.59 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--------S----------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--------~----------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~ 66 (414)
....|...|++++|..|+..|..||++... . ..+-..+..||+++++.+.|+...-+.|.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 455677888888888888888888887322 1 2345678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029 67 PSMSKAYWRKATACMKLEEYETAKVALEKG 96 (414)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a 96 (414)
|....-|++.|.|...+.+|.+|.+.+.-+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876654
No 219
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0046 Score=63.53 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+.++..-+.+-.+++|++|+....+.|...|++..++...-.|+++++.|++|+.+.+.-..+.-.+ ...|.+|.|.|+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4566677777888888888888888888888876666555555555555555553322221111111 111445555555
Q ss_pred cCChHHHHHHHH
Q 015029 83 LEEYETAKVALE 94 (414)
Q Consensus 83 lg~y~~A~~~~~ 94 (414)
+++.++|+.++.
T Consensus 92 lnk~Dealk~~~ 103 (652)
T KOG2376|consen 92 LNKLDEALKTLK 103 (652)
T ss_pred cccHHHHHHHHh
Confidence 555555555444
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.25 E-value=0.019 Score=50.12 Aligned_cols=97 Identities=26% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACM 81 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~-~~~kl~~~~~Al~~~~~Ai~l~p---~~~~a~~~~g~~~~ 81 (414)
...|......+++..|+..+..++...+.+.......+. ++...+++..|+..+.+++.+++ .....++.++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence 344444444555555555555555544443333333333 45555555555555555544443 23334444444444
Q ss_pred HcCChHHHHHHHHHHHHhCCC
Q 015029 82 KLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~ 102 (414)
..+++..|...+.+++...+.
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcc
Confidence 555555555555555555544
No 221
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0011 Score=66.44 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h-------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIE-L------- 65 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~A-L~~~P~--------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-l------- 65 (414)
..+.-+.+..|..|+|.+|..++... +...|. ...++.|+|-+|++++.|.-+...|.+|++ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677889999999999999987552 333333 234557899999999999999999999996 1
Q ss_pred -CC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029 66 -EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV 122 (414)
Q Consensus 66 -~p---------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 122 (414)
.| ..-+..|+.|+.|.+.|+.-.|.+||.++......|+.++..+++|-....+...
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l 387 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGL 387 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhh
Confidence 12 1457899999999999999999999999999999999998888888855544443
No 222
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.16 E-value=0.004 Score=50.72 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY 73 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~kl~-----------~~~~Al~~~~~Ai~l~p~~~~a~ 73 (414)
.+..+|.+||+-+|+++....+...+++. .++..-|.+++++. -+-.|+.+|.+++.+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999877764 66777788887763 23458999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 74 WRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 74 ~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
|.+|.-+-....|++++.-.++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988888888999999888887653
No 223
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.13 E-value=0.0019 Score=51.26 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=59.7
Q ss_pred ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------C---------CeeeecccccccccCCcceE
Q 015029 215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY 277 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~y~~~~~L~~~I~p~~s~~ 277 (414)
+.|++++++.+.|.+.++|+.++++.|.+.++.|.|+..... + ..|.-.+.|- .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 679999999999999999999999999999999998754321 0 0244445564 688888888
Q ss_pred EEeCcEEEEEEee
Q 015029 278 EVLSTKVEIRLAK 290 (414)
Q Consensus 278 ~v~~~kiei~L~K 290 (414)
+....-+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 8888888888865
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.12 E-value=0.0012 Score=65.17 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C--CH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEP----S--MS 70 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p----~--~~ 70 (414)
+.+-+.|+.+|-.|+|+.||.+-..-|.+... --.++.|+|.||+-+|+++.|+..|.+++.|.- . -.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 44566777788888888888776666555322 256778888888888888888887777665532 1 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG------DSRFTNLIKEFVGLLMQNAVYLCWNY 128 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (414)
...|-+|..|+.+.+|+.|+.++.+-+.+... ....--.++.+...++...+++.+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45677788888888888888777764443221 11222335666666666666655443
No 225
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.002 Score=59.54 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~ 75 (414)
+.+...+++..|+|-+++++.+..|...|.|..+|+.||.++...=+..+|.+||.++++++|....+..|
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999986655444
No 226
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.11 E-value=0.0023 Score=49.75 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=63.2
Q ss_pred ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeecccccccccCCcceEEEeCc
Q 015029 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 282 (414)
Q Consensus 217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~~~ 282 (414)
+++++++.+.|.|.++|+.++++.|.+.++.|.|+..... ...|.-.+.|-..|+++..+..+...
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 5788999999999999999999999999999999854321 24588888999999999999999988
Q ss_pred EEEEEEee
Q 015029 283 KVEIRLAK 290 (414)
Q Consensus 283 kiei~L~K 290 (414)
-++|.+.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 88988865
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.10 E-value=0.00092 Score=42.16 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p 101 (414)
++|+.+|.+|..+|++++|..+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666555
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.10 E-value=0.014 Score=50.91 Aligned_cols=94 Identities=27% Similarity=0.370 Sum_probs=81.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCh
Q 015029 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~~P---~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg~y 86 (414)
.++..|+++.|+..|.+++...| .....+..++..+...+++..|+..+.+++...+. ...++..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78889999999999999988776 45667777777788889999999999999999988 688999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 015029 87 ETAKVALEKGASLAPGDS 104 (414)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~ 104 (414)
..|...+..++...|...
T Consensus 219 ~~a~~~~~~~~~~~~~~~ 236 (291)
T COG0457 219 EEALEYYEKALELDPDNA 236 (291)
T ss_pred HHHHHHHHHHHhhCcccH
Confidence 999999999999888733
No 229
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.03 E-value=0.039 Score=54.43 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC 80 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~ 80 (414)
|......|...+..|+|.+|..+..++-+..+....+|..-+.+--.+|+++.|-.+..+|-++.++ ....+..++..+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4556778889999999999999999988888888888888899999999999999999999999443 567889999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 120 (414)
...|+|..|.....++++..|.++.+.....+++...+.-
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999988888888555443
No 230
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.03 E-value=0.0034 Score=50.60 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=60.6
Q ss_pred ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEeCcE
Q 015029 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 283 (414)
Q Consensus 217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~~k 283 (414)
||+++++.+.|.+.++|+.++++.|.+.++.|.|+.... ++ ..|.-.+.|-..|+++..+.++...-
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 789999999999999999999999999999988885432 12 13666778989999999899998889
Q ss_pred EEEEEeeCCC
Q 015029 284 VEIRLAKAEP 293 (414)
Q Consensus 284 iei~L~K~~~ 293 (414)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999753
No 231
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.0026 Score=67.43 Aligned_cols=116 Identities=25% Similarity=0.401 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWR 75 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl--~~~~~Al~~~~~Ai~l~p~~~~a~~~ 75 (414)
+.++...|+.+|..++|..|.--|..++.+-|.+ +..+.+++.||+.+ ++|..++..++.|+...|.+..++++
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 3467889999999999999999999999988743 56778888888765 79999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
++.+|..+++++-|.+.+.-....+|.+..+..-..++++.+
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 999999999999999998888899999977666566666544
No 232
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.97 E-value=0.014 Score=49.19 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 36 AELFADRAQASIKLQ---NFTEAVADANRAIE-LEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~-l~p~-~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
....+++|.|+.+.. +..+.+.+++..+. -.|. ..+..|++|+.++++++|+.|+.++..+++.+|+|.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 567889999998864 57789999999997 4443 567899999999999999999999999999999999988877
Q ss_pred HHHHH
Q 015029 111 KEFVG 115 (414)
Q Consensus 111 ~~~~~ 115 (414)
..++.
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 77763
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.96 E-value=0.0016 Score=41.06 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~ 68 (414)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777763
No 234
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=96.95 E-value=0.0013 Score=65.02 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=70.4
Q ss_pred ccccccCCCeEEEEEEeCC-CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC-cEEEEEEeeCC
Q 015029 215 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAE 292 (414)
Q Consensus 215 r~dW~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~ 292 (414)
-|-|.|+.+.|.|++.++. ++..++.|.+..+.|.+.+. ..-.|...||+.|..+.|.|.+.- .++|+.|.|++
T Consensus 291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d 366 (596)
T KOG4379|consen 291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD 366 (596)
T ss_pred cceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence 5999999999999998765 56688999998888777653 134567789999999999999876 69999999995
Q ss_pred C-CCCCccccCC
Q 015029 293 P-IQWSSLEFSK 303 (414)
Q Consensus 293 ~-~~W~~L~~~~ 303 (414)
. ..|++|-..+
T Consensus 367 e~~twprL~~~d 378 (596)
T KOG4379|consen 367 EIQTWPRLFAQD 378 (596)
T ss_pred cccccchheeec
Confidence 4 8999997554
No 235
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.91 E-value=0.0045 Score=43.75 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
++++.+|.+|+++|+|.+|+.+++.+++++|++..|.-....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688899999999999999999999999999998876554443
No 236
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.01 Score=61.46 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
-+.+.|..+|+.++|..+++.|...+..-|.+ +....+++.||+++.+++.|+..++.|-+.+|.++...+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 36788999999999999999999999886665 567788999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 015029 78 TACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.+....|.-.+|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998876654
No 237
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.83 E-value=0.0054 Score=62.97 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=92.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029 13 FIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 13 ~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
-..|+...|+..+..|+-..|.. ...+.++|+++++-+-..+|-..+.+++.+....+..+|-+|.+|..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34789999999999999988864 35688999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 015029 92 ALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
.|+.++.++|+++.+...+..+.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999888876654
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.0078 Score=62.26 Aligned_cols=86 Identities=22% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHH
Q 015029 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
.+...|.+++...+...|+.+..++..|..+...|+.++|+..|++++..... ...++|.+|-++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 34455555555555555555555555555555555666666555555532221 23355555555555666665555
Q ss_pred HHHHHHHhCC
Q 015029 92 ALEKGASLAP 101 (414)
Q Consensus 92 ~~~~a~~l~p 101 (414)
+|.+..+.+.
T Consensus 327 ~f~~L~~~s~ 336 (468)
T PF10300_consen 327 YFLRLLKESK 336 (468)
T ss_pred HHHHHHhccc
Confidence 5555555433
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.031 Score=50.22 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
....+..++..+++++|+..+..++....+. +.+-.++|.+.+.+|.+++|+..++....-+- .+...-.+|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence 4567888999999999999999999764433 45667889999999999999987765443111 2345677999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCH
Q 015029 82 KLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
..|+-++|...|++++..++++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999985544
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.76 E-value=0.0045 Score=58.99 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
..+.+....++|+.++|..+|..||.+.|+++.++...|......++.-+|-.||-+|+.++|.+.+|+.+++...
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3456667778888888888888888888888888888888888778888888888888888888888888777643
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0021 Score=59.26 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=65.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 40 ~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
-.-|..++.-++|..|+.+|.+||.++|..+..|-+++.|++.+.+++.+...+.++++++|+-......++.+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 334667777889999999999999999999999999999999999999999999999999998776666666555
No 242
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.66 E-value=0.027 Score=49.13 Aligned_cols=110 Identities=15% Similarity=0.009 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
..+..........++.+++..++...--+.|+.+.+-..-|..|+..|+|.+|++.++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35677888899999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+|+..= ..+-..+++..+ |+......+.+.
T Consensus 91 ~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred cCChHH-HHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999642 111222343443 555554444443
No 243
>PRK10941 hypothetical protein; Provisional
Probab=96.65 E-value=0.02 Score=54.64 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
+.+.-..+...++|+.|+...+..|.+.|+++.-+.-||.+|.+++.+..|+.|++..++..|+.+.+..-+.++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999999999999999999999999988776665543
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.65 E-value=0.013 Score=49.33 Aligned_cols=66 Identities=24% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
.+-..|.++...|+++.|+..|.+++.+.|..+.+|.++++++...|+.++|+..+.+++++....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 445567788888999999999999999999999999999999999999999999999999997654
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.64 E-value=0.0036 Score=38.92 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
++|++|.+++.+|++++|...|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666654
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.62 E-value=0.0063 Score=59.26 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS---------- 68 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---------- 68 (414)
+...|+++...+.|+++++.|+.|+....++ ...+..+|..|-.+++|++|+-+..+|..+-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 4557889999999999999999999985443 357888999999999999999999999988542
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
...++|+++++|-.+|+.-+|+++++.+.++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2457899999999999999999999998765
No 247
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.054 Score=50.92 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 36 AELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 36 ~~~~~~ra~~~~kl----~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
-..+.++|.++.++ +.+.+|...|+.....-+..+.....+++|+..+|+|++|...++.++..++++++....+-
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34566678877775 46888888888887766667888888999999999999999999999999999998877776
Q ss_pred HHHHHHhh
Q 015029 112 EFVGLLMQ 119 (414)
Q Consensus 112 ~~~~~~~~ 119 (414)
-+-..++.
T Consensus 249 v~a~~~Gk 256 (299)
T KOG3081|consen 249 VLALHLGK 256 (299)
T ss_pred HHHHHhCC
Confidence 66544433
No 248
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.58 E-value=0.082 Score=52.19 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y 86 (414)
..+.-+...|++++|.+....+|+..-+.- ++.+ .-..+.+++..=++.+++.+...|+++..++.+|..|+..+.|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 456677889999999999999999764432 2221 2234678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029 87 ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129 (414)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 129 (414)
.+|..+|+.++...|+.. -..+++.+...+++...+.....+
T Consensus 345 ~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 345 GKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999999999755 456677777666666555544444
No 249
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.03 Score=54.13 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
--+.+++-+.+.-|+|..||...++|+.++|.+..+++.-|.|++.++++.+|+..|+..+.++
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d---------------- 183 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID---------------- 183 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh----------------
Confidence 3467889999999999999999999999999999999999999999999999999999885544
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++|..+.+.+-.++|++.......+.+.
T Consensus 184 ----~e~K~~~~l~~l~~k~~~~~L~~er~~r 211 (390)
T KOG0551|consen 184 ----DEAKKAIELRNLIHKNDKLKLIEERDVR 211 (390)
T ss_pred ----HHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence 3444444444346666665444444433
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.023 Score=48.71 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
.+...+..+...|+++.|+..+.+++..+|.+-.++..+-.+|..+|++..|+..|.++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999888644
No 251
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.47 E-value=0.0043 Score=37.09 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
+++++|.+++.+++++.|..+|++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666555553
No 252
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.46 E-value=0.0021 Score=64.69 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
+.+++.++++.++|..|+.-+.+||+.+|....+|+.||.++++++.|.+|+.+|+....+.|+.+.+...+..|-+..
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999999999988877777775543
No 253
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.46 E-value=0.06 Score=51.83 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k-l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
+....+.+-+.+..+.|-..|.+|+...+-...+|...|..-+. .++.+.|...|+.++..-|.+...+......+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 44555666667779999999999996555567888888888667 46777799999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCH
Q 015029 84 EEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~ 104 (414)
++.+.|...|++++..-+.+.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHH
T ss_pred CcHHHHHHHHHHHHHhcCchh
Confidence 999999999999998877766
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.42 E-value=0.024 Score=57.61 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=75.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CC---C----------
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------EP---S---------- 68 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-------~p---~---------- 68 (414)
-..+.+..+...-|.+-.+||+++|+++.+|+.+|.-. .....+|...+++|++. +. .
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 34677899999999999999999999999999887531 22344555555555433 21 0
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 015029 69 -----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKEFV 114 (414)
Q Consensus 69 -----~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~ 114 (414)
...+.+|+|.|+-++|+.++|+..|+..++..|.. ..++..+-.+.
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 13466789999999999999999999999888863 33555555544
No 255
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.29 E-value=0.014 Score=55.79 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
-.+.|.-..+.|+.++|...|+.|+.++|.++.++.++|+....-.+.-+|..||-+++-+.|.|..+.....
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444555567899999999999999999999999999999999999999999999999999999987655443
No 256
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.28 E-value=0.049 Score=60.87 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW 74 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~ 74 (414)
...|..++..|+++.|..++.+++...+.. ..++..+|.++...|++++|+..+.+++.+... ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 346778889999999999999999865443 245678899999999999999999999987442 234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 75 RKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 75 ~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.+|.+++..|+++.|...+.+++.+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998876
No 257
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.02 Score=53.63 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIE----IS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~----~~--P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
...|.....-||.+.|-.+|++.-+ ++ -.+-..+.+.+.+|+..++|.+|...|.++++.|+.++.+-.+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 4568889999999999999984332 22 23355677778888888999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 80 CMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
+.-+|+..+|+..++.+++..|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999743
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.25 E-value=0.04 Score=57.02 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATA 79 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~ 79 (414)
++..|..+...|+.++|++.|++++..... ...+++.+|.||+-+.+|++|..+|.+.+..+.= ..-.+|..|.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 567899999999999999999998853221 2578899999999999999999999999987653 34556668889
Q ss_pred HHHcCChHHHHHHHHHHH
Q 015029 80 CMKLEEYETAKVALEKGA 97 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~ 97 (414)
+..+|+...+...-+++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~ 367 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAE 367 (468)
T ss_pred HHhhccchhhhhhHHHHH
Confidence 999999866666555554
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.15 Score=47.21 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=75.4
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------
Q 015029 5 LEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMS------- 70 (414)
Q Consensus 5 ~~~~g~~~~~~-g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~------- 70 (414)
++..|..+-.. .++++||.+|..|-+..... -.+++..|..-..+++|.+|+..|+++.+-.-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34556666666 78999999999987763222 35666667777778999999999999987655432
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
..+|.-|.|++...+.-.|...+++...++|.-
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 245667788888899999999999999999973
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.22 E-value=0.0098 Score=36.84 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~ 68 (414)
+++++|.||.++|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666554
No 261
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.076 Score=53.95 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 015029 20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGAS 98 (414)
Q Consensus 20 ~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~-y~~A~~~~~~a~~ 98 (414)
.-+.+|..|+...+.+..+|.+......+.+.|.+--..|..++..+|+++..|..-|...|..+. ++.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445679999999999999998887777777789999999999999999999999999999999887 9999999999999
Q ss_pred hCCCCHHHHHHH
Q 015029 99 LAPGDSRFTNLI 110 (414)
Q Consensus 99 l~p~~~~~~~~l 110 (414)
.+|+++.+....
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999755543
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.14 E-value=0.045 Score=51.28 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (414)
.+.-+++-|...+..|+|.+|+..|+.+....|. ..++.+.++.+++..++|++|+..+++.+.+.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3677899999999999999999999999999885 4789999999999999999999999999999998775
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.09 E-value=0.11 Score=50.00 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=84.3
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 015029 5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~-~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~~g~~~ 80 (414)
+...|..-+. .++...|...|+.+++..|.+..++......++++++.+.|...|++++..-+... ..|-+....-
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 4556666556 67777799999999999999999999999999999999999999999998866533 5777777777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
...|+.+......+++.++.|.+..+....
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 888999999999999999999866555443
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.06 E-value=0.01 Score=35.35 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~ 68 (414)
.++.++|.+|+.+++++.|+.++..++.++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677888888888888888888888877764
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.06 E-value=0.013 Score=37.65 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 015029 73 YWRKATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
+.++|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.99 E-value=0.013 Score=37.61 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~ 66 (414)
+|.++|.+|.++|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999977654
No 267
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=95.97 E-value=0.034 Score=43.51 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=57.9
Q ss_pred ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C----CeeeecccccccccCCcceEEEe-CcEEEEE
Q 015029 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 287 (414)
Q Consensus 217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~ 287 (414)
+++.+++.+.|.+.++|+.++++.|++.++.|.|+..... + ..|.-.+.|-..|++++.+-.+. ..-+.|.
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 7899999999999999999999999999999999864321 1 13666778888999998888886 6666665
Q ss_pred E
Q 015029 288 L 288 (414)
Q Consensus 288 L 288 (414)
|
T Consensus 84 l 84 (86)
T cd06475 84 A 84 (86)
T ss_pred e
Confidence 4
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.11 Score=50.33 Aligned_cols=110 Identities=10% Similarity=-0.034 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSK---AYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-~p~~~~---a~~~~g~~~ 80 (414)
+-..+..++.+|++.+|...+++.|+-.|.+..++-.--.+|+.+|+...-...+++.+-. +++.|. .+-.++.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445667888999999999999999999999888877778888999999999999999977 776644 334466678
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
..+|-|++|...-.+++++++.|.-+.....-+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 8889999999999999999998876555544443
No 269
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.93 E-value=0.067 Score=59.79 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS 70 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--------~~ 70 (414)
+...|..+...|+++.|+..|.+++...... ..++.++|.+++..|++..|...+.+++.+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3556788899999999999999999763321 346678899999999999999999999987321 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
..+..+|.+++..|++++|...+.+++.+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 345678999999999999999999988764
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.93 E-value=0.073 Score=57.39 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
..-.|..+++.|.+++|..+++..-..-+++-..+-.+-+||..++++++|..+|++++..+|. -+..+.+..+|.+.+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3457889999999999997776655567778888899999999999999999999999999998 889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCH
Q 015029 85 EYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~ 104 (414)
.|..=...--+..+..|.++
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHhCCccc
Confidence 99876655555556677666
No 271
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=95.91 E-value=0.041 Score=42.55 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=58.5
Q ss_pred ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC--CC---CeeeecccccccccCCcceEEE-eCcEEEEEEee
Q 015029 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 290 (414)
Q Consensus 219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K 290 (414)
+.+++.+.|.+.++|+.+++|.|++.++.|+|+.... .+ ..|.-.+.|-..|+++..+-++ ....+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 5678899999999999999999999999999986431 11 2477778899999999988887 66788888753
No 272
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.89 E-value=0.35 Score=55.03 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHH
Q 015029 12 AFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~~~lg~y~~ 88 (414)
+.+.|++++|+++|....+.. +.+...|..+..+|.+.|++++|+..|......+ | +...|..+..+|.+.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 344444444444444444432 2223334444444444444444444444444331 1 22333334444444444444
Q ss_pred HHHHHHHHH
Q 015029 89 AKVALEKGA 97 (414)
Q Consensus 89 A~~~~~~a~ 97 (414)
|...|..+.
T Consensus 668 A~~l~~eM~ 676 (1060)
T PLN03218 668 AFEILQDAR 676 (1060)
T ss_pred HHHHHHHHH
Confidence 444444433
No 273
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.87 E-value=0.14 Score=47.16 Aligned_cols=91 Identities=19% Similarity=0.071 Sum_probs=68.4
Q ss_pred HcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhCCC------CHHHH
Q 015029 14 IDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNF-------TEAVADANRAIELEPS------MSKAY 73 (414)
Q Consensus 14 ~~g~y~~Ai~~y~~AL~~----~-P~~--~~~~~~ra~~~~kl~~~-------~~Al~~~~~Ai~l~p~------~~~a~ 73 (414)
....+++|++.|.-||-. . +.. +.+++.+|.+|..+++- ..|+..|.+|+..... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 355788999998887764 2 222 56778888888888874 4577777777766532 35688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 74 WRKATACMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 74 ~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
|.+|.++.++|++++|..+|.+++.......
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999987654443
No 274
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.13 Score=48.38 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-HH
Q 015029 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL 93 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~-~~ 93 (414)
.+.+.+|.-+|.+.-+..|..+..+...|.|++.+++|++|...++.|+..++..+..+.++-++-..+|.-.++.. .+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45688999999998877788899999999999999999999999999999999999999999999999999877765 55
Q ss_pred HHHHHhCCCCHHHHH
Q 015029 94 EKGASLAPGDSRFTN 108 (414)
Q Consensus 94 ~~a~~l~p~~~~~~~ 108 (414)
.+....+|.++-+..
T Consensus 266 ~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 266 SQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHhcCCcchHHHH
Confidence 666677887774443
No 275
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.74 E-value=0.063 Score=58.44 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+...-..+.+.|.+++|..+|....+..+ .+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence 45556778889999999999998876422 23456788888999999999999887653 2233 45678888888999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY 128 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (414)
.|+++.|...+++.++++|.+......+..+....+.-..+.....
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999877666666666544444444444333
No 276
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=95.72 E-value=0.04 Score=42.68 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=56.1
Q ss_pred CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC--------CeeeecccccccccCCcceEEEeC-cEEEEEEee
Q 015029 223 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 290 (414)
Q Consensus 223 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K 290 (414)
+.+.|.+.++|+.+++|.|.+.++.|.|+...... ..|.-.+.|-..|+++..+-++.. .-+.|.+.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57899999999999999999999999998643211 247778889999999988888887 788888765
No 277
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.71 E-value=0.49 Score=53.86 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCh
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-~~~~a~~~~g~~~~~lg~y 86 (414)
...+.+.|++++|+++|...++.. +-+...|..+..+|.+.|++++|+..|+.....+. .+...|..+..+|.+.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 344555666666666666655542 23345566666666666666666666666554321 1445566666666667777
Q ss_pred HHHHHHHHHHHH
Q 015029 87 ETAKVALEKGAS 98 (414)
Q Consensus 87 ~~A~~~~~~a~~ 98 (414)
++|.+.|.....
T Consensus 736 eeAlelf~eM~~ 747 (1060)
T PLN03218 736 PKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 777766666543
No 278
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.70 E-value=0.097 Score=39.93 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~---~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
+....++|..+|...+.++|+..+.++|+..++... ++-.+..+|...|+|.+++.++-.=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998877754 4455667788889999998887766655
No 279
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.69 E-value=0.34 Score=43.47 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
-+...++..|.-+++..|...++...+.+|. .+.-....|.+|--+|.+.+|...|+.++...| .+.+..+.+..+.
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La 204 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLA 204 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 4567889999999999999999999888775 356667778889999999999999999999988 5678889999999
Q ss_pred HcCChHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGA 97 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~ 97 (414)
.+|+.++|...+....
T Consensus 205 ~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 205 KQGRLREANAQYVAVV 220 (251)
T ss_pred HhcchhHHHHHHHHHH
Confidence 9999988887665443
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.12 Score=44.40 Aligned_cols=84 Identities=15% Similarity=-0.073 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
.+...........+..++..++...--+.|+.+.+-..-|..|+..|+|.+|++.++.+.+-.+..+.+--.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45566677777999999999998888889999999999999999999999999999999999888899999999999999
Q ss_pred CChH
Q 015029 84 EEYE 87 (414)
Q Consensus 84 g~y~ 87 (414)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 9853
No 281
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=95.67 E-value=0.051 Score=42.51 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=58.1
Q ss_pred ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC----CeeeecccccccccCCcceEEE-eCcEEEEEEe
Q 015029 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 289 (414)
Q Consensus 219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~ 289 (414)
+.+++.+.|.+.++|+.+++|.|++.++.|.|+.... ++ .+|.-.+.|-..|+++..+-++ ...-+.|+|-
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 5678899999999999999999999999999986421 11 1255677899999999988888 5778888886
Q ss_pred e
Q 015029 290 K 290 (414)
Q Consensus 290 K 290 (414)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 5
No 282
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=0.17 Score=51.22 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
+...|.--..++++..|-..|.+||..+..+..+++..+.+-++.+....|...+++|+.+-|.--..||..-..--.+|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 34455556678899999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHH
Q 015029 85 EYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~ 105 (414)
+..-|.+.|++=+...|+...
T Consensus 156 Ni~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999987543
No 283
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.59 E-value=0.02 Score=57.88 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEI---------SP---------NSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~---------~P---------~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p 67 (414)
.+.|.++|..|.|..++-+|.+||+- .| ..-++++|.|..|+..|+.-.|.+||.+++..-.
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 45688899999999999999999961 11 1257899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 015029 68 SMSKAYWRKATACMK 82 (414)
Q Consensus 68 ~~~~a~~~~g~~~~~ 82 (414)
.++..|+|+|.||..
T Consensus 367 ~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIM 381 (696)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999999874
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.62 Score=43.52 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMS 70 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-----p~~~ 70 (414)
|..+...++.+-..++|++|...+.+|++-..+| +.+|-..+.....+..+.++...|++|+.+- |+-.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3455666777777889999999999998654444 4556666777777889999999999999884 3333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKEFVGLL 117 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~~ 117 (414)
-.-+.++-=....-+.++|+..|++++.+-..+ ......+++|-..+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 333334444556677899999999988765443 33444455555444
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.43 E-value=0.23 Score=44.44 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----HHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--M----SKAY 73 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~----~~a~ 73 (414)
..+...|+.+++.|+++.|++.|.++....-.. ...++++-.+.+..+++..+.....+|-.+-.. + .+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 346678888999999999999998877764332 456666666777778888888888888766432 1 2344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 015029 74 WRKATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 74 ~~~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
...|.++...++|..|...|-.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 556777888888988888887664
No 286
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=95.40 E-value=0.08 Score=41.23 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=57.4
Q ss_pred CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---CC-----eeeecccccccccCCcceEEEe-CcEEEEEEeeC
Q 015029 221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAKA 291 (414)
Q Consensus 221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K~ 291 (414)
+++.+.|.+.++|+.+++|.|++.++.|+|+..... +. .|.-.+.|-..|+++..+-+.. ..-+.|+|-|+
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 567899999999999999999999999999874321 11 2666678989999999988885 77888988764
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.37 E-value=0.21 Score=39.44 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029 57 ADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 57 ~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p 101 (414)
..++.++..+|++..+.|.+|.++...|+|++|++.|-.+++.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 344455555555555555555555555555555555555555444
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.35 E-value=0.17 Score=39.90 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (414)
Q Consensus 21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~ 69 (414)
.+..+.+++..+|++..+.+.+|.+++..|++++|+..+-.++..++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4667889999999999999999999999999999999999999998865
No 289
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.15 Score=48.23 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
....++=.+|+..++++.|+.+.++.+.++|.++..+.-+|.+|.++|.+.-|+..++..++..|+++.+........
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455566677888899999999999999999999999999999999999999999999999999999987665544433
No 290
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.38 Score=45.37 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIEL----EP--SMSKAYWRKAT 78 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l----~p--~~~~a~~~~g~ 78 (414)
+...+++.-.|.|.-.+..|.+.+..+ |..+.+...+|..-++.|+.+.|...|+++-.. +. .....+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 445677888999999999999999987 678899999999999999999999999955433 32 24557777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++...++|..|...|.+++..|+.++.+....+-|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 888899999999999999999999887665555555
No 291
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.04 E-value=0.34 Score=52.74 Aligned_cols=97 Identities=10% Similarity=-0.059 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~ 80 (414)
+......+.+.|++++|+.+|.+.+.. .|+ ...|..+-.++.+.|.+++|...|+...+...- +...|.-+..+|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 345567788999999999999998875 455 556777888889999999999999999865332 445788899999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC
Q 015029 81 MKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
.+.|++++|.+.+++. ...|+.
T Consensus 473 ~r~G~~~eA~~~~~~~-~~~p~~ 494 (697)
T PLN03081 473 GREGLLDEAYAMIRRA-PFKPTV 494 (697)
T ss_pred HhcCCHHHHHHHHHHC-CCCCCH
Confidence 9999999999998764 344543
No 292
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.02 E-value=0.11 Score=40.33 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=55.4
Q ss_pred cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeecccccccccCCcceEEEe-CcEEEEEEee
Q 015029 220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 290 (414)
Q Consensus 220 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 290 (414)
.+++.+.|.+.++|+.+++|.|++.++.|.|+.... .+ ..|.-.+.|-..|+++..+-++. ..-+.|.+-|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 467789999999999999999999999999886432 11 12666778888999998887774 6677887754
No 293
>PLN03077 Protein ECB2; Provisional
Probab=94.93 E-value=0.29 Score=54.56 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~---~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
.-..+.+.|++++|+.+|....+. .| +...|..+..+|.+.|++++|...++.. .+.|+ ...|-.+-.+|..-|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC
Confidence 345678899999999999998743 34 3568888999999999999999998875 35554 556666666788889
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhh
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLC 125 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 125 (414)
+.+.|....+++++++|++......+..++...+.-..+..
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999888888877755544333333
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.87 E-value=0.04 Score=50.71 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~ 69 (414)
.+...++++.|.++|.+||.+.|....-|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45566777777777777777777777777777777777777777777777777777753
No 295
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=94.81 E-value=0.18 Score=39.62 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=53.8
Q ss_pred cccccCC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeecccccccccCCcceEEEe
Q 015029 216 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL 280 (414)
Q Consensus 216 ~dW~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~ 280 (414)
+|=++++ +.+.|.+.++|+.+++|.|.+.++.|.|+..... -..|.-.+.|-..|+.. +....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 3446764 8999999999999999999999999998853211 12366677787788775 56667
Q ss_pred CcEEEEEEe
Q 015029 281 STKVEIRLA 289 (414)
Q Consensus 281 ~~kiei~L~ 289 (414)
..-+.|+|.
T Consensus 81 ~GvL~I~l~ 89 (90)
T cd06470 81 NGLLTIDLE 89 (90)
T ss_pred CCEEEEEEE
Confidence 777777775
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.72 E-value=0.055 Score=49.81 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=56.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 45 ~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (414)
...+.++.+.|...+++|+.+.|.....|||+|......|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456689999999999999999999999999999999999999999999999999998764
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.26 Score=45.94 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWR 75 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~------p~~~~a~~~ 75 (414)
++-.+...-+.++|+++|++++..--.+ .+++...+..|.++..|.+|-..+.+-..+. +...+++.-
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va 195 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA 195 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence 3334444555555555555555432111 3444555555555555555544443333221 122233333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.-++|....+|..|..+|+.+.+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhc
Confidence 33444444556666655555443
No 298
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.49 E-value=0.69 Score=52.53 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=86.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEE 85 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~~lg~ 85 (414)
....|-+.+.+++|.++|+.-++..-+....|...|..+++..+-+.|...+.+|+..-|. +.+..-..|+.-|..|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 4456667788888888888888877777788888888888888888888888888888886 77777888888888888
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 86 YETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
-+.+...|+-.+.-.|.-..++..+-+..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 88888888888888887776666655544
No 299
>PLN03077 Protein ECB2; Provisional
Probab=94.41 E-value=0.89 Score=50.75 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATAC 80 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--~~~~a~~~~g~~~ 80 (414)
+......+...|+.++|+.+|++.++. .|+.. .|..+-.++.+.|++++|+..|+......+ -+...|.-+..+|
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 455667889999999999999998874 56654 455555678899999999999999985432 2557888899999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
.+.|++++|...++.. .+.|+.......+.
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 9999999999999875 35665443333333
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.33 E-value=0.26 Score=39.08 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEP 67 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~---------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p 67 (414)
......|+|..|++.+.+.++..... ..++.++|.++...|++++|+..++.|+++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44566777777766666655542211 24455566666666666666666666666543
No 301
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.31 E-value=0.041 Score=53.36 Aligned_cols=66 Identities=29% Similarity=0.182 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~ 68 (414)
.-+..+|.++++.+....||..|+.||.++|+...-|-.|+.++..+|++.+|..|+..|+.++-+
T Consensus 149 ~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 149 ILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 345678899999999999999999999999999999999999999999999999999999998753
No 302
>PRK10743 heat shock protein IbpA; Provisional
Probab=94.30 E-value=0.27 Score=41.98 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=59.9
Q ss_pred ccccc-cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEe
Q 015029 215 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVL 280 (414)
Q Consensus 215 r~dW~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~ 280 (414)
.+|-+ .+++.+.|.+.++|+.+++|.|.+.++.|+|+.... ++ ..|.-.+.|-..|+++. -+..
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~ 113 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV 113 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence 46888 489999999999999999999999999999986421 11 13555778889999984 5667
Q ss_pred CcEEEEEEeeC
Q 015029 281 STKVEIRLAKA 291 (414)
Q Consensus 281 ~~kiei~L~K~ 291 (414)
..-+.|+|-|.
T Consensus 114 dGVL~I~lPK~ 124 (137)
T PRK10743 114 NGLLYIDLERV 124 (137)
T ss_pred CCEEEEEEeCC
Confidence 77899999985
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=2 Score=40.03 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------KA 72 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~------~a 72 (414)
+.+.|+.+-..++|..|=..|.+|-... .+.+..|..-+.||-+ .+..+|+.+++++|++--+.. +.
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 4455556666677777777776665541 1235667777777744 489999999999999865533 34
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q 015029 73 YWRKATACMK-LEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 73 ~~~~g~~~~~-lg~y~~A~~~~~~a~~l~p~ 102 (414)
++-+|.+|.. +.+++.|+.+|+++-+.-..
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 5567888766 48999999999998766543
No 304
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.17 E-value=0.53 Score=48.15 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029 39 FADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG 96 (414)
Q Consensus 39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~~lg~y~~A~~~~~~a 96 (414)
...+|+|..++|+.++|++.+...++..|. +...++++-.+|..+++|.++...+.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344566666677777777777776666553 4456666777777777776666666654
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.03 E-value=0.13 Score=33.36 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
.++.++|.+|..+|+|++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666654
No 306
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.32 Score=47.33 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=66.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEI-SPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~-~P~~~---~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
-.++|..|+...-...+.++|-. +++-+ -..--+|.+++..|-|.+|...+++|+++++.+.-+...++.++...|
T Consensus 144 h~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~ 223 (491)
T KOG2610|consen 144 HDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNG 223 (491)
T ss_pred hhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence 35677788888888888887776 55543 222335667777888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHH
Q 015029 85 EYETAKVALEK 95 (414)
Q Consensus 85 ~y~~A~~~~~~ 95 (414)
++.++.+++.+
T Consensus 224 r~Keg~eFM~~ 234 (491)
T KOG2610|consen 224 RHKEGKEFMYK 234 (491)
T ss_pred hhhhHHHHHHh
Confidence 88888887765
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.96 E-value=1.2 Score=45.09 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHH--------------------------------------------
Q 015029 4 DLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAEL-------------------------------------------- 38 (414)
Q Consensus 4 ~~~~~g~~~~~~g~-y~~Ai~~y~~AL~~~P~~~~~-------------------------------------------- 38 (414)
-+..-|..+.+.|. -++|+.++..+++..+.+..+
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 34556677777777 667888888888777766110
Q ss_pred ----HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029 39 ----FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (414)
Q Consensus 39 ----~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a 96 (414)
+..=|.-++..|+|.++.-...=..+++| .+.+|..+|.|++...+|.+|-.+|...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 11112333456788888888888888899 8999999999999999999999888653
No 308
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.28 Score=46.51 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=64.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~ 80 (414)
.=..+...++++.|+..-.+.|.++|.++.-..-||.+|.++|.+.-|+.|++..++.-|+.+.+-+-++...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999999999999887766655543
No 309
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=93.83 E-value=0.32 Score=37.72 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeecccccccccCCcceEEEe-CcEEEEEEee
Q 015029 221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 290 (414)
Q Consensus 221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 290 (414)
.++...|.+.++|+.+++|.|++.++.|.|+.... .+. .|.-.+.|-..|+++..+-+.. ...+.|.|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 35678899999999999999999999999986431 111 2555677888999998888885 6777877753
No 310
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.65 E-value=2.8 Score=41.88 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CC---------------CCHHHHHHHHHH
Q 015029 29 IEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EP---------------SMSKAYWRKATA 79 (414)
Q Consensus 29 L~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------------~p---------------~~~~a~~~~g~~ 79 (414)
|+.+|-....++.++.++..+|++..|....++|+-. +. ....+.|+....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4668989999999999999999999999888888622 11 124588999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-CHHHHHHH
Q 015029 80 CMKLEEYETAKVALEKGASLAPG-DSRFTNLI 110 (414)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l 110 (414)
+.+.|.+..|.++++-.+.+||. |+-.....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ 144 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF 144 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence 99999999999999999999999 77544333
No 311
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.49 E-value=0.83 Score=38.73 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 5 ~~~~g~~~~~~g~---y~~Ai~~y~~AL~-~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
.++.+-++....+ ..+.|.+++..+. -.|.. -++++.+|..|+++++|+.|+++++..++..|++..|.-..-.
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4455555555444 4678889999886 44443 5788999999999999999999999999999999877544433
No 312
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=2.4 Score=40.04 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=86.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHH
Q 015029 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAK 90 (414)
Q Consensus 13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~-~A~ 90 (414)
++...-..|+.+-..+|.++|-+-..+..|=.++..++ ++.+-+..+...+.-+|.+...|..+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34566788999999999999999888888888887764 6788899999999999999999999999999999887 778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 91 VALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++++.++..+..|-.+.....-|-
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVL 157 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHH
Confidence 888889988888777666666555
No 313
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=93.27 E-value=0.36 Score=37.81 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----C-C------CeeeecccccccccCCcceEEE-eCcEEEEE
Q 015029 221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 287 (414)
Q Consensus 221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~ 287 (414)
..+.+.|.+.++|+.+++|.|++.++.|.|+.... . + ..|.-.+.|-..|+++..+-.+ ...-+.|.
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 35678999999999999999999999999986421 1 1 2355677888889988877777 44455554
Q ss_pred E
Q 015029 288 L 288 (414)
Q Consensus 288 L 288 (414)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 4
No 314
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=1.4 Score=44.89 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=81.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029 13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 13 ~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~ 88 (414)
....|.+.+-+.|..+|++-|+. +.+++..|+..++..++..|...+-.||-+.|.+ +.+-..-.+-.++++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence 45678888999999999998875 6677778888888899999999999999888854 222223334567888999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029 89 AKVALEKGASLAPGDSRFTNLIKEFVGLLMQ 119 (414)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 119 (414)
+...|++.++..|.|-......+.++..++.
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 9999999999999887776667777754443
No 315
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.21 E-value=0.53 Score=46.28 Aligned_cols=94 Identities=16% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----S------AELFADRAQASIKLQNFTEAVADANRAIELEP------SM 69 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------~~ 69 (414)
...|..+-..+||++|+-+..+|+++..+ + ..+++.++.+|.++|++-.|..+++.|..+.- ..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 45677888899999999999999887322 1 45677889999999999999999999988742 24
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 70 SKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.....-+|.+|-..|+.+.|..-|+.+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 566777899999999999999999887764
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.95 E-value=0.25 Score=32.01 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.++..+|.+|..+|+|++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999998764
No 317
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=92.93 E-value=0.54 Score=40.39 Aligned_cols=74 Identities=9% Similarity=0.123 Sum_probs=58.2
Q ss_pred ccccc-CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEeC
Q 015029 216 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS 281 (414)
Q Consensus 216 ~dW~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~ 281 (414)
+|=++ +++.+.|++.++|+++++|.|.+.++.|+|+.... ++ ..|.-.+.|-..|+++ +-+...
T Consensus 35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n 112 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN 112 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence 56676 46789999999999999999999999999986421 11 1266667788889887 466777
Q ss_pred cEEEEEEeeC
Q 015029 282 TKVEIRLAKA 291 (414)
Q Consensus 282 ~kiei~L~K~ 291 (414)
.-+.|+|-|.
T Consensus 113 GVL~I~lPK~ 122 (142)
T PRK11597 113 GLLHIDLIRN 122 (142)
T ss_pred CEEEEEEecc
Confidence 7899999986
No 318
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.93 E-value=2.7 Score=41.99 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 015029 6 EKKAKEAFI---DDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (414)
Q Consensus 6 ~~~g~~~~~---~g~y~~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl---------~~~~~Al~~~~~Ai~l~p~ 68 (414)
...|.++-+ .|+.++|+..+..+|. ..+.+++.|.-.|.+|-.+ ..+++|+..|.++++++|+
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 356677777 8999999999999555 5677889999999998654 3578899999999999874
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.86 E-value=1.5 Score=42.97 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCHH
Q 015029 71 KAYWRKATACMKL------EEYETAKVALEKGASLAPGDSR 105 (414)
Q Consensus 71 ~a~~~~g~~~~~l------g~y~~A~~~~~~a~~l~p~~~~ 105 (414)
++++.+|.....+ +.++++...|..+..++|....
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 4555555555555 5555555555555555554443
No 320
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.80 E-value=0.62 Score=51.95 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl----~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
.++++..+.|+.|+..|.+.-...|.- -++.+..|.+++.. + .+.+|+.-|++.- -.|.-+.-|+-.|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 467788899999999999998888876 46777788887754 2 5777777776543 35667888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (414)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (414)
+|.++|+|++-+.+|..|++.-|.++.+.....
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 999999999999999999999999887655443
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.73 E-value=1.8 Score=41.50 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
..++..++..+...++++.++..+++.+.++|.+-.+|.++-.+|+..|+...|+..|.+...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5677888889999999999999999999999999999999999999999999999999987764
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.70 E-value=4.3 Score=38.85 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CCC----------HHHHHHHHHHHHHccCHHHH---HHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEIS----PNS----------AELFADRAQASIKLQNFTEA---VADANRAI 63 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~----P~~----------~~~~~~ra~~~~kl~~~~~A---l~~~~~Ai 63 (414)
|+.+++.|..++..+ +|+.|+..+++|+++- ... ...+..++.+|+..+.++.. +...+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 567899999999999 9999999999999872 111 45778889999988876644 33444444
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 015029 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP-GDSRFTNLIKEFV 114 (414)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p-~~~~~~~~l~~~~ 114 (414)
.-.|+.+..++..-.++...++.+.+.+.+.+.+.--. .+..+...+.-+.
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK 166 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 44577677775555555558899999998888876544 4444554444444
No 323
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.48 E-value=0.28 Score=47.19 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=76.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD 103 (414)
Q Consensus 25 y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~-~g~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (414)
|.++-...|+++.+|...++--.+.+.|.+--..|..++.++|.+.+.|.. .+.-++..+++..|...|.++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555568889999988888888999999999999999999999999988 5566888999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015029 104 SRFTNLIKEFV 114 (414)
Q Consensus 104 ~~~~~~l~~~~ 114 (414)
+.++...-+.+
T Consensus 176 p~iw~eyfr~E 186 (435)
T COG5191 176 PRIWIEYFRME 186 (435)
T ss_pred chHHHHHHHHH
Confidence 97665554444
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.40 E-value=3.1 Score=40.64 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIE 64 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~ 64 (414)
+..+...+..+-+.|.++.|...+.++....+. .+.+.+..+..+...|+-.+|+..+...+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888889999888888887775421 466777888888888888888888888887
No 325
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=92.39 E-value=0.59 Score=36.60 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC------CCC-----eeeecccccccccCCcceEEEeCc-EEEE
Q 015029 221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEE-----AYHFQPRLFGKIIPAKCRYEVLST-KVEI 286 (414)
Q Consensus 221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~-----~y~~~~~L~~~I~p~~s~~~v~~~-kiei 286 (414)
.++.++|++.++|+.+++|.|++.++.|+|+.... +.. .|.-.+.|-..|+++..+-+.... .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 35789999999999999999999999999987432 111 244566788888888877777666 4444
No 326
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.09 E-value=4.2 Score=46.62 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~ 81 (414)
-|...|..++++.+-+.|-.++.+||+.-|. .......-|+.-++.|+-+.+...|+-.+.-.|.....|.-+...-.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 3567888999999999999999999999998 67888999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
..|+.+.+...|++++.+.-.-..+...+
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 99999999999999998876544443333
No 327
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.07 E-value=4.5 Score=38.66 Aligned_cols=95 Identities=16% Similarity=-0.040 Sum_probs=55.9
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHHH
Q 015029 5 LEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSKA 72 (414)
Q Consensus 5 ~~~~g~~~~~----~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~-------~~~~Al~~~~~Ai~l~p~~~~a 72 (414)
....|..++. ..|+.+|+.+|.+|.+..-.. ..+.+.++.+|..-. +...|+..|.+|.... ++.+
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 3444555544 346777777777777664222 233566666665531 2235666666666655 6667
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 015029 73 YWRKATACMK----LEEYETAKVALEKGASLAP 101 (414)
Q Consensus 73 ~~~~g~~~~~----lg~y~~A~~~~~~a~~l~p 101 (414)
.+++|.+|.. ..++..|..+|.++-....
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766644 2356777777777766655
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=1.3 Score=46.07 Aligned_cols=101 Identities=19% Similarity=0.048 Sum_probs=79.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCHHHHHHH------HHHHHH
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK------ATACMK 82 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~-~~Ai~l~p~~~~a~~~~------g~~~~~ 82 (414)
..+...++...|+.....++..+|.+..++.+++.+....|....++..+ ..+....|.+......+ |..+..
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 33444566777888888899999999999999999998887766655544 44888888877766665 888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
+|+..++...++++..+.|.++.+...+
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 8888999999999999999887654443
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.81 E-value=4.1 Score=43.19 Aligned_cols=91 Identities=16% Similarity=0.028 Sum_probs=73.3
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 6 EKKAKEAFIDD-----YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 6 ~~~g~~~~~~g-----~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
...|.+++... ++..|+.+|.++-+.. ++.+.+.+|.+|.... ++..|..+|..|... .+..|++++|
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la 367 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLA 367 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHH
Confidence 34677777743 7899999999999875 4567888889988765 678999999998864 4788999999
Q ss_pred HHHHHc----CChHHHHHHHHHHHHhC
Q 015029 78 TACMKL----EEYETAKVALEKGASLA 100 (414)
Q Consensus 78 ~~~~~l----g~y~~A~~~~~~a~~l~ 100 (414)
+||..= .+...|..+|.++-..+
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 998753 36789999999998888
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.68 E-value=2.3 Score=45.03 Aligned_cols=104 Identities=12% Similarity=-0.049 Sum_probs=79.3
Q ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCC
Q 015029 5 LEKKAKEAFI-----DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQ-----NFTEAVADANRAIELEP 67 (414)
Q Consensus 5 ~~~~g~~~~~-----~g~y~~Ai~~y~~AL~-------~~P~~~~~~~~ra~~~~kl~-----~~~~Al~~~~~Ai~l~p 67 (414)
....|.+++. .+|.+.|+.+|..+.. .. .+.+.+.+|.+|++.. ++..|+..+.+|-.++
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence 3445555554 4789999999999877 32 4557888999999853 7888999999998765
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 68 SMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 68 ~~~~a~~~~g~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
++.+.|++|.++..-. ++..|..+|..|-.... ..+..++..|.
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y 370 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCY 370 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 6779999999998866 67899999998876554 44566666666
No 331
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=91.45 E-value=0.9 Score=44.51 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=53.7
Q ss_pred CCCeEEEEEEeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC--cEEEEEE
Q 015029 221 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL 288 (414)
Q Consensus 221 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L 288 (414)
....+.|.|.++++ +..++.+++.++.|.|.+... .|.|.|.|-.+|+++.++-+... ..+.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 36789999999998 668999999999999987532 59999999999999998766554 3677776
No 332
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=1.9 Score=45.40 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
.++.+-|.-+++.++|..+++.|...+.--|. +.+.+..++.||..+.+.+.|.+.++.|-+.+|.+.-.+..+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 46677888999999999999999999977553 567888899999999999999999999999999988655444
Q ss_pred HH
Q 015029 111 KE 112 (414)
Q Consensus 111 ~~ 112 (414)
-.
T Consensus 435 ~~ 436 (872)
T KOG4814|consen 435 LQ 436 (872)
T ss_pred HH
Confidence 33
No 333
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.06 E-value=0.39 Score=31.34 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
+|..+|.+-+..++|.+|+.||.+|+.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 334
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.97 E-value=9.9 Score=37.27 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029 23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (414)
Q Consensus 23 ~~y~~AL~~~P~~~~~~~~ra~~~~kl~~------------~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~ 90 (414)
..|++.+..+|+|..+++.+....-.+-. .+..+..+++|++.+|++...+..+-.++..+.+-+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788888999998888887766555432 456688899999999988888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 015029 91 VALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l 110 (414)
.-+++++..+|.+..+...+
T Consensus 86 ~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHCCCChHHHHHH
Confidence 88999999999877554443
No 335
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.88 E-value=5.6 Score=39.78 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE-AVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~-Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
.-.+..+|.+|+..++-.++..+.+..|+-..+. ...+.+.|+-.. =++-+.+...+.|++.+..+.++.+-+.-|
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~---lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPHPDIAL---LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH---HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 3456778888888888888888888877643221 122333343221 223344455667889999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhhhhhhhhHHHHHhhhc
Q 015029 85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL-MQNAVYLCWNYELLRRVG 135 (414)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 135 (414)
+|..|...-+.+....|... +...+.++.... +..++...|..+..+...
T Consensus 344 e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 344 EFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred chHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 99999999999999999765 555666666555 667777788877655443
No 336
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.82 E-value=6 Score=39.54 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=71.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 11 EAFIDDYFELAYDLYSQAIEI---SPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~---~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
.....|+|+.||++.+..... .++- +.++...+...+. -+...|..++..++.|.|+...+-.--+.+||+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 456678888888888765543 3322 2233333333322 357889999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 83 LEEYETAKVALEKGASLAPGDSRFTNL 109 (414)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (414)
.|+..++-..++.+.+.+|. +.+...
T Consensus 276 d~~~rKg~~ilE~aWK~ePH-P~ia~l 301 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH-PDIALL 301 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence 99999999999999999884 444333
No 337
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.77 E-value=1.7 Score=34.33 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=46.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029 45 ASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 45 ~~~kl~~~~~Al~~~~~Ai~l~p~---------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p 101 (414)
..++.++|..|+..+.+.+..... ...+.+.+|.++...|++++|+..++.++.+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345789999998888888766431 246788899999999999999999999987754
No 338
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.56 E-value=1 Score=38.71 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y 86 (414)
....+.++..++..|+|.-|+..++.++..+|++..+...++.+|..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666666666666666666666666665543
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.46 E-value=1.5 Score=44.47 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~ 61 (414)
....|.-+|..|+|.+++-+-.-..+.+| ++.+|..+|.|++..++|.+|..++..
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45567889999999999998888888999 899999999999999999999988744
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.44 E-value=1 Score=46.94 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
+.+.++.+.+.|-...|-.++.++|.++...+..++.+|.+|+.+++...|++.|..|+.++|.++...--+-
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 4678899999999999999999999999888899999999999999999999999999999999877654433
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.39 E-value=2.2 Score=46.30 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCCHH----------HHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNSAE----------LFADRAQASIKLQNFTEAVADANRAI 63 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~A----------L~~~P~~~~----------~~~~ra~~~~kl~~~~~Al~~~~~Ai 63 (414)
.+++.+..+-..+|...|+++|.++ |..+|.... +|.--|+.+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677888888899999999999874 444555433 44444667777899999999888775
Q ss_pred Hh---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 64 ~l---------------------~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.- ...+..|.|.+|+.|...|++.+|+.+|.++..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22 123667899999999999999999998887644
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.05 E-value=5.1 Score=35.06 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
...++.+..+-+..++.+++...+.-.--+.|..+..-+.-|..+...|+|.+|...|+....-.|..+.....+.-|..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 35677777777888999999999998889999999999999999999999999999999998888989988888888883
No 343
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=90.02 E-value=2 Score=33.26 Aligned_cols=67 Identities=7% Similarity=-0.009 Sum_probs=48.3
Q ss_pred cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeecccccccccCCcceEEEe-CcEEEE
Q 015029 220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEI 286 (414)
Q Consensus 220 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei 286 (414)
.+++...|.+.++|+.+++|.|++.++.|+|+.... .+. .|.-++.|-..|+++..+-+.. ..-+.|
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I 79 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVV 79 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEE
Confidence 356789999999999999999999999999986431 111 2444556878888887666653 444444
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.73 E-value=5.8 Score=35.91 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 22 YDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 22 i~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
+....+.+..++.+ ..+.+.+|..+...+++++|+..++.++..-.+ -..+-+|+|.+++.+|.+++|+..+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 33333434444343 234566788888899999999999998865443 255789999999999999999988875
Q ss_pred H
Q 015029 96 G 96 (414)
Q Consensus 96 a 96 (414)
.
T Consensus 152 ~ 152 (207)
T COG2976 152 I 152 (207)
T ss_pred c
Confidence 3
No 345
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.50 E-value=1.2 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHHhCC
Q 015029 72 AYWRKATACMKLEEYETAKVA--LEKGASLAP 101 (414)
Q Consensus 72 a~~~~g~~~~~lg~y~~A~~~--~~~a~~l~p 101 (414)
.++-+|-.++..|+|++|... |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 224444443
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.33 E-value=1.6 Score=33.09 Aligned_cols=31 Identities=32% Similarity=0.259 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
+|..+..+|..+-..|+|.+||.+|+.|++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3566777888888888888888887777654
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.30 E-value=0.63 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.+|.++|.+-...++|..|...|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999875
No 348
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.30 E-value=1.2 Score=42.26 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
|..+|.+|+.+.|++...|.++|..+...++.-.|+-.|-+++....-.+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888886654567777777777766
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.83 E-value=4.9 Score=41.14 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~ 88 (414)
-......|+...|-+....+|...|.++.....++.++..+|.|+.|+++..-+-.+-..-..+.--+-..++.+|+++.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34567789999999999999999999999999999999999999999988766654433333444445556778888888
Q ss_pred HHHHHHHHHHhCCCCHH
Q 015029 89 AKVALEKGASLAPGDSR 105 (414)
Q Consensus 89 A~~~~~~a~~l~p~~~~ 105 (414)
|...-...+.-.-.+++
T Consensus 376 a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEE 392 (831)
T ss_pred HHHHHHHHhccccCChh
Confidence 87766655544444443
No 350
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.67 E-value=5.4 Score=39.90 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Q 015029 11 EAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~----~P~~~~~~~~ra~~~~k---l~~~~~Al~~~~~Ai-~l~p~~~~a~~~~g~~~~~ 82 (414)
.|-.-++|+.-|.+.+..-.+ -++.+.....+|.++.+ .|+.++|+..+..++ ...+.+++.+..+|.+|..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 445567788888877654333 23446677788889988 799999999998844 4455688888888888765
Q ss_pred c---------CChHHHHHHHHHHHHhCCC
Q 015029 83 L---------EEYETAKVALEKGASLAPG 102 (414)
Q Consensus 83 l---------g~y~~A~~~~~~a~~l~p~ 102 (414)
+ ...+.|+.+|.++.+++|+
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3 2367899999999998864
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.60 E-value=0.56 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 015029 72 AYWRKATACMKLEEYETAKVALE 94 (414)
Q Consensus 72 a~~~~g~~~~~lg~y~~A~~~~~ 94 (414)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 352
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.48 E-value=1.5 Score=41.53 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 55 Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|+.+|.+|+.+.|.++..|.++|+++...|+.=.|+.+|-+++-...-.+.+...+..+-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999998865544455555555444
No 353
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=0.3 Score=47.72 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y 86 (414)
+.+.+.++.+.|..|+..-..++..++....+|+.|+.+++.+.++++|++++..+....|++....-.+...-....+|
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 35667788899999999988899989999999999999999999999999999999999999876655555544444443
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.34 E-value=1.7 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q 015029 37 ELFADRAQASIKLQNFTEAVAD--ANRAIELEPS 68 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~--~~~Ai~l~p~ 68 (414)
+.++.+|..+...|+|++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456667777777777777777 4366666654
No 355
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.40 E-value=6.2 Score=35.19 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
-.++..+|..|.+.|++++|++.|.++..-.-. ....++++-.+.+..+++......+.++..+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 468889999999999999999999998765432 46688999999999999999999999987654
No 356
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.11 E-value=13 Score=35.48 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=70.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC---------
Q 015029 11 EAFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EPS--------- 68 (414)
Q Consensus 11 ~~~~~g~y~~Ai~~y~~AL~~~----P~~----~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l----~p~--------- 68 (414)
.+.++|+++.|..+|.++=... |+. +..+++.|...+..+ +|+.|+..+++|+.+ ...
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3578999999999999976543 333 567788888899999 999999999999988 321
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHH---HHHHHHHhCCCCHHHH
Q 015029 69 -MSKAYWRKATACMKLEEYETAKV---ALEKGASLAPGDSRFT 107 (414)
Q Consensus 69 -~~~a~~~~g~~~~~lg~y~~A~~---~~~~a~~l~p~~~~~~ 107 (414)
....+..++.+|...+.++.... .++.+..-.|+.+.+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23466678889999888765444 3333444455555544
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.96 E-value=1.1 Score=45.29 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~---------p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.++.+..+|.-+|+|..|+...+.. .++ +.+...+|..|-||+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999998876542 222 23566899999999999999999999988664
No 358
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.85 E-value=5.4 Score=33.20 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Q 015029 37 ELFADRAQASIK--LQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASLA-- 100 (414)
Q Consensus 37 ~~~~~ra~~~~k--l~~~~~Al~~~~~Ai~l~p~------------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~-- 100 (414)
.+|..++.+-.+ -+-|++|..-|.+|...... +..+|--++.++..+|+|++++..-.+++...
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 456666655544 47899999999999988643 34577789999999999999998888777542
Q ss_pred ---CCCHHHHHHHHHHH
Q 015029 101 ---PGDSRFTNLIKEFV 114 (414)
Q Consensus 101 ---p~~~~~~~~l~~~~ 114 (414)
-....-..|+.-+-
T Consensus 88 RGEL~qdeGklWIaaVf 104 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVF 104 (144)
T ss_dssp H--TTSTHHHHHHHHHH
T ss_pred ccccccccchhHHHHHH
Confidence 12334566766554
No 359
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.82 E-value=3.7 Score=45.96 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----hHHHH
Q 015029 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-----YETAK 90 (414)
Q Consensus 16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~-----y~~A~ 90 (414)
..+.+|+..|++ |.-.|..+.=|...|.+|.++++|.+-++++..|++.-|+++..-+.+-.+.+++.+ -..|.
T Consensus 533 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888866 445677788899999999999999999999999999999887655555555554443 34566
Q ss_pred HHHHHHHHhCCCCHH
Q 015029 91 VALEKGASLAPGDSR 105 (414)
Q Consensus 91 ~~~~~a~~l~p~~~~ 105 (414)
.++--++.+.|....
T Consensus 612 ~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 612 VFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHhCccccc
Confidence 777778888886543
No 360
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.80 E-value=2.6 Score=42.47 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA 59 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----------~P~~~~~~~~ra~~~~kl~~~----------~~Al~~~ 59 (414)
|+--+...|..+...+.|.+|+..+-.|=+. --+-+.+-+-+-.||+.+++. ..|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4566788999999999999999887655332 222244445567788888643 3455555
Q ss_pred HHHHHhC---------CC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 60 NRAIELE---------PS------MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 60 ~~Ai~l~---------p~------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.++.--+ ++ ....++.-|+..|+.|+-++|.++|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5444221 22 234566789999999999999999998654
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.73 E-value=13 Score=37.34 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHHh
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIEL 65 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~--~~~~~ra~~~~--kl~~~~~Al~~~~~Ai~l 65 (414)
.....++..+|..++|..|.+.|...+..-|.+. ..+..++.+|. ..-+|.+|...++.++..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567789999999999999999999988634433 45666666655 467899999999877754
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.58 E-value=11 Score=36.87 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHcCChHHHHHHHH
Q 015029 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA---CMKLEEYETAKVALE 94 (414)
Q Consensus 18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~---~~~lg~y~~A~~~~~ 94 (414)
.+..+.+|.+||+.+|++..++..+-.+..+..+-+....-+++++..+|.+...|..+-.. .+..-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56788899999999999999999888888899999999999999999999877665554333 233345677777787
Q ss_pred HHHHh
Q 015029 95 KGASL 99 (414)
Q Consensus 95 ~a~~l 99 (414)
+|+..
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 77653
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.54 E-value=8.4 Score=38.50 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SA-ELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~~-~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-----~~~~a~~~~ 76 (414)
.++.....+.++|-|..|++...-.+.++|. |+ .+++-+-...++.++|+=-+..++....... ..+...|-+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3566677888999999999999999999998 64 3444455555677888877777776555211 144577889
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHHhCC
Q 015029 77 ATACMKLEEY---------------ETAKVALEKGASLAP 101 (414)
Q Consensus 77 g~~~~~lg~y---------------~~A~~~~~~a~~l~p 101 (414)
+.+++.+++- +.|...+.+|+...|
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 9999999998 899999999998887
No 364
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=12 Score=39.32 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=77.6
Q ss_pred cCCHH-HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029 15 DDYFE-LAYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 15 ~g~y~-~Ai~~y~~AL~~~P~~~~~~~~--ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
.+... -|+..|...+.+++.++.++.. |+..+..++....+.-.+..++..+|.+..++..+|.++...|..-.+..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence 33433 3777777777788888877544 48888888999999999999999999999999999999999888777766
Q ss_pred HHHH-HHHhCCCCHHHHHHH
Q 015029 92 ALEK-GASLAPGDSRFTNLI 110 (414)
Q Consensus 92 ~~~~-a~~l~p~~~~~~~~l 110 (414)
.+.. +....|.+.++...+
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHhcCcchHHHHhhH
Confidence 5555 889999998877776
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=14 Score=38.82 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCC----------
Q 015029 15 DDYFELAYDLYSQAIEI-S-----------PNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEP---------- 67 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~-~-----------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-----l~p---------- 67 (414)
...|++|...|.-|+.. + |-....++.+|.++...|+.+.|....++++- +.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45588888888887775 3 33367889999999999998887777776662 122
Q ss_pred ------C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029 68 ------S---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLIKEFVGLLMQNAVYLCWNYELLR 132 (414)
Q Consensus 68 ------~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (414)
. ...+.|+.-..+.+.|.+..|.++|+..+.++|. |+-+...+-+.. .-++..++|..+...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~---ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY---ALRAREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---HHHHHhHHHHHHHHH
Confidence 1 2346677777888899999999999999999998 876554444443 223333445544433
No 366
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.26 E-value=10 Score=36.09 Aligned_cols=81 Identities=17% Similarity=0.073 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------
Q 015029 18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLE--------- 84 (414)
Q Consensus 18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg--------- 84 (414)
...|+..|.++-... ++.+.+++|.+|..- .++.+|+..|.+|.+.+. ..+++.++ +++..|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 348999999988876 678899999888763 489999999999999887 88999999 777666
Q ss_pred ------ChHHHHHHHHHHHHhCCCC
Q 015029 85 ------EYETAKVALEKGASLAPGD 103 (414)
Q Consensus 85 ------~y~~A~~~~~~a~~l~p~~ 103 (414)
+...|...+..+....+..
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChh
Confidence 6667777777766655543
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.19 E-value=3.4 Score=38.07 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 015029 18 FELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATA 79 (414)
Q Consensus 18 y~~Ai~~y~~AL~~~P~--~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-~a~~~~g~~ 79 (414)
+..|+..|.+|++.... . ..+++.+|..+.++|++++|++.|.+++....... .....+|.-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 67888888888886432 2 57888899999999999999999999998654332 344555543
No 368
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=11 Score=38.72 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------CH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIELEPS----------MS 70 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----------~~ 70 (414)
-+.-.|.-...-+.|+.|..+|..|+++... + +.+-.|+|..|++.++-+.- ++-.-.+.|. ..
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL---YKALDLIGPLNTNSLSSQRLEA 445 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH---HHHHHhcCCCCCCcchHHHHHH
Confidence 3455677777888999999999999997433 3 34556789999997764443 2222234453 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
.++|..|...|..+++.+|...+.+.++..
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 578889999999999999999999998876
No 369
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=13 Score=35.80 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
...-+.-+...+..+++.+|...|..++..+|.+..+.+.++.||..+|+++.|...|..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 345556677788899999999999999999999999999999999999999988877764
No 370
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.70 E-value=15 Score=39.01 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------------------AELFADRAQASIKLQNFTEAVADANRA 62 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-------------------~~~~~~ra~~~~kl~~~~~Al~~~~~A 62 (414)
|+-+.+-|..-+...+++.|+.+..+|+.. |.+ ..+|...+......|-++.....|++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445566666677777888888877777664 222 334444555555567777777788888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 63 i~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
|.|.-..|..-.+.|..+.....|++|...|++++.|.+=-.....|..-+.+..
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 8877777777777787777777788888888888877765444555544444333
No 371
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.64 E-value=16 Score=38.97 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=73.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHc
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMKL 83 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-----~~~~a~~~~g~~~~~l 83 (414)
++..-.-|-++.....|++.|++.--.+..-.|.|..+....-+++|.+.|++-|.|-+ +....|+-.++.-+.-
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 44445567777788889999888777788888888888888888999999999988865 2345667777776766
Q ss_pred CChHHHHHHHHHHHHhCCC
Q 015029 84 EEYETAKVALEKGASLAPG 102 (414)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~ 102 (414)
-..+.|...|++|+...|.
T Consensus 564 ~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCPP 582 (835)
T ss_pred CCHHHHHHHHHHHHhcCCH
Confidence 7788899999999988873
No 372
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=85.28 E-value=4.2 Score=41.33 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHH-------ccC-----HHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIK-------LQN-----FTEAVADANR 61 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------~~~~~~ra~~~~k-------l~~-----~~~Al~~~~~ 61 (414)
...+.|..++..|+|.+|+..|..+|..-|-. ..-++.++.-|+- ++. .++..+.++.
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34668999999999999999999998873221 1112222222211 112 2222223333
Q ss_pred HH-----HhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029 62 AI-----ELEPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRFT 107 (414)
Q Consensus 62 Ai-----~l~p~~~~a~~~~g~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~~ 107 (414)
|. .|.|.+...-+|.|+ ..|+.++|..|..+.++.+++.|....+.
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 32 223334334445554 46789999999999999999999876443
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.82 E-value=1.2 Score=26.15 Aligned_cols=24 Identities=17% Similarity=-0.090 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADAN 60 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~ 60 (414)
.+++.+|.+|..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777888888887776654
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.79 E-value=7 Score=29.94 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWRKATACMKLEEYETAKVALEKG 96 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~---a~~~~g~~~~~lg~y~~A~~~~~~a 96 (414)
-.+..|.-++...+.++|+....++++..++... ++-.+..+|...|+|.+++.+-.+-
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788899999999999999877554 4444667899999999988765443
No 375
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.57 E-value=6 Score=32.41 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCHHHH
Q 015029 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT 107 (414)
Q Consensus 42 ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~~g~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~ 107 (414)
+|..++..|++-+|++..+..+...+... ..+..-|.+++.+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988654 667777887776653 2468889999999999775444
Q ss_pred HHH
Q 015029 108 NLI 110 (414)
Q Consensus 108 ~~l 110 (414)
..+
T Consensus 82 ~~l 84 (111)
T PF04781_consen 82 FEL 84 (111)
T ss_pred HHH
Confidence 333
No 376
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.28 E-value=2 Score=41.61 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~-ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~ 75 (414)
..+.-.-+.|.|.+--..|.++|..+|.|+++|.. -+.-|.-.++++.+.+.|.++++++|..+..|+.
T Consensus 112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34444556778888889999999999999999886 4455666799999999999999999998775543
No 377
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=12 Score=35.48 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~-~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~ 93 (414)
..+..+-+++++++++.+|.|-..+..|-.+...+|++. .-+..+..++..+..+..||-.+-=++...+.|+.-+.+.
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 345677889999999999999999999999999999988 8899999999999999999999999999999999999998
Q ss_pred HHHHHhCCCCH
Q 015029 94 EKGASLAPGDS 104 (414)
Q Consensus 94 ~~a~~l~p~~~ 104 (414)
...++.|-.|.
T Consensus 171 ~~Lle~Di~NN 181 (318)
T KOG0530|consen 171 DELLEEDIRNN 181 (318)
T ss_pred HHHHHHhhhcc
Confidence 88888765443
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.12 E-value=7.6 Score=39.99 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 015029 11 EAFID-DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW 74 (414)
Q Consensus 11 ~~~~~-g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~ 74 (414)
.+.+. +.|.+--..|.++|..+|+++.+|+.-|.-.+..+. .+.|.+.|.++++.+|+++..|.
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 33444 448999999999999999999999988777777665 99999999999999999876543
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.94 E-value=6.7 Score=37.63 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
.+...+..+...|+++.++.++++.+..+|-+-.+|..+-.+|++.|+...|+..|.+.-.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35567788889999999999999999999999999999999999999999999999887765
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.31 E-value=42 Score=35.98 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=76.5
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHH
Q 015029 3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK 71 (414)
Q Consensus 3 e~~~~~g~~~~-~~g~y~~Ai~~y~~AL~~~P~~--~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~ 71 (414)
....+.|..++ .-.+++.|..++.+++.+..++ . .+.+-++.+|.+.+... |+..++++|+.-.. ...
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44567788777 7889999999999998886432 2 23445577777777666 99999999988655 455
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 015029 72 AYWRKATACM--KLEEYETAKVALEKGASLA--PGDSRFTNLIK 111 (414)
Q Consensus 72 a~~~~g~~~~--~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~ 111 (414)
..|++-.+.+ ..+++..|.+.++.+..+. ..++.+.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 5566553322 2379999999999988776 46665544433
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.91 E-value=5.1 Score=40.53 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPN---------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~---------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
-..+.+.-.|||..|+..+.- |+++.. ....++..|-||+.+++|.+|++.|..++.--......+..+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 345677778999999998754 222221 2567889999999999999999999888742111110111111
Q ss_pred HHHHH-cCChHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 015029 78 TACMK-LEEYETAKVALEKGASLAPG--DSRFTNLIKE 112 (414)
Q Consensus 78 ~~~~~-lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~ 112 (414)
.-+-. .+..+.....+--|+.+.|. +..+...+.+
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke 243 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE 243 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 11111 22334445556667777775 4545444443
No 382
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=82.86 E-value=7.8 Score=34.42 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=54.8
Q ss_pred ccccCCC-eEEEEEEeCCCCCCc-eEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029 217 EFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 293 (414)
Q Consensus 217 dW~Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 293 (414)
+=.+.++ .++|.--+++|..++ +.|.+..+...|.+...+ .|.-.|.|-.++ ++.-++.+...-+||.|.+.+.
T Consensus 95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 95 DTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence 3344566 688888999998777 899998766666664332 355677787774 6766788888899999999753
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.66 E-value=4.4 Score=34.79 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126 (414)
Q Consensus 69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 126 (414)
-....+.++...+..|+|.-|...+..++..+|+|..++....++.+.++....-..|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~ 126 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANW 126 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHH
Confidence 4566777888888888888888888888888888888888888888777665444433
No 384
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=82.34 E-value=8.4 Score=30.41 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeecccccccccCCcceEEEeC-cEEEEE
Q 015029 222 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIR 287 (414)
Q Consensus 222 ~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~ 287 (414)
++.-.|.|.+.+..+++|.|++.++.|.|+..... | ..|.-.+.|-..|+++..+-.+.. ..+.|.
T Consensus 14 ~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 14 SEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 44567889999999999999999999999864321 1 135556678888888887777773 344443
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.27 E-value=5.5 Score=38.31 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
++...+..|...|.+.+|+..+++++.++|.+...+..+-.+|..+|+--.|...|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344455666667777777777777777776666666666667777765555555544
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.23 E-value=9.6 Score=35.84 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVAL 93 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~~~g~~~~~lg~y~~A~~~~ 93 (414)
+...+|..|+++|+|++|+..++.+...-.. ......++..|++.+|+.++.+...
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4445666666666666666666666544221 2345555666666666666655443
No 387
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.10 E-value=18 Score=31.33 Aligned_cols=81 Identities=12% Similarity=0.002 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL 116 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (414)
..++....+-+...++.++...+...--+.|..+...+.-|.++...|+|.+|...|.....-.+.-+.....+.-|...
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 45556666666788999998888888888999999999999999999999999999999888777777777777777743
Q ss_pred H
Q 015029 117 L 117 (414)
Q Consensus 117 ~ 117 (414)
+
T Consensus 91 l 91 (153)
T TIGR02561 91 K 91 (153)
T ss_pred c
Confidence 3
No 388
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=81.98 E-value=2.7 Score=47.74 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 015029 2 ATDLEKKAKEAFIDDYFELAYD------LYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~------~y~~A-L~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-------- 66 (414)
|....+.|.....++.+.+|.+ +++.. ..+.|....+|..++..+.+++++++|+....+|+-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4567788889999999998888 55532 33478889999999999999999999999999988663
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
|+...+|..++...|..+....|+..+.+++.+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 345779999999999999999999988887765
No 389
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.47 E-value=4.1 Score=31.07 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|..+-..|+|++|+.+|..||+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 556777888888888888888888777664
No 390
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.42 E-value=10 Score=37.24 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=74.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 015029 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA 92 (414)
Q Consensus 15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~~~lg~y~~A~~~ 92 (414)
+-+|..=..+|+......|+ +..-+||+.+.-+..-.+.++...+-+.... ..+..+|--+|-.+.++|+..+|...
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 34566666677766666665 5678889999988888888888777666542 23556777799999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q 015029 93 LEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
|++++.+.++..+....+.++.
T Consensus 388 ydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 388 YDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHHHhcCChHHHHHHHHHHH
Confidence 9999999998776555554443
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.01 E-value=7.1 Score=36.08 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 45 ~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
.+++-+.+.+|+.++..-++-.|.+......+...|.-.|+|+.|...++-+-.+.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344556666666666666666666666656666666666666666666666666666543
No 392
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.90 E-value=6.8 Score=35.63 Aligned_cols=72 Identities=25% Similarity=0.153 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHH
Q 015029 17 YFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (414)
Q Consensus 17 ~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~a~~~~g~~~~~lg~y~~A~ 90 (414)
.-+.|+..|-++ +..| +++++.+.+|..|. ..+..+|+..+.+++++... +++.+.-++.+++.+|+|+.|-
T Consensus 121 ~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666442 2223 46888888887776 57889999999999999653 6899999999999999999874
No 393
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.81 E-value=2.9 Score=31.82 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|..+=..|+|++|+.+|..||+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556777788888888888888888887764
No 394
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.56 E-value=4.4 Score=46.07 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Q 015029 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL------- 65 (414)
Q Consensus 1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l------- 65 (414)
+++.+...+..+...+++++|+..-.+|.-+ .|+....|.+++...+..++...|+..+.++..+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3567888999999999999999987776543 3455788999999999999999999999999977
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 66 -EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 66 -~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
.|.-....-+++..+..+++++.|+.+++.|..+.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445566778888999999999999999998743
No 395
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=26 Score=35.27 Aligned_cols=103 Identities=10% Similarity=0.056 Sum_probs=77.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCC---
Q 015029 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAY-WRKATACMKLEE--- 85 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a~-~~~g~~~~~lg~--- 85 (414)
..+..-.++-+.+...+|+.+|++-.++..|..++.+.+ ++..-++.++++++.||.+..+| ||+-++-+....
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 334445677888889999999999999999999999875 47899999999999999876654 555555444444
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 86 YETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
..+-+++..+++.-++.|-.+......+-
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 55666777778777887776666655444
No 396
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.17 E-value=4.1 Score=30.05 Aligned_cols=30 Identities=47% Similarity=0.490 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|-.+..+|..+-..|+|++|+.+|..|++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445677888888888888888888887764
No 397
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.56 E-value=5 Score=43.63 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
++-++..|+.+|..|+|++|...|-+.|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 455778899999999999999999888764
No 398
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.19 E-value=9.6 Score=34.69 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhhhhhh
Q 015029 51 NFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPG----DSRFTNLIKEFVGLLMQNAVYLC 125 (414)
Q Consensus 51 ~~~~Al~~~~~Ai~l~p-~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~~~~~~~~ 125 (414)
.-+.|++-|-.+-.-.. +.++..+.+|..|. ..+-++|+..|.+++++... |+.+...++.+...++....+..
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 34667766644332221 36777777776555 77889999999999998655 46777778887766666666666
Q ss_pred h
Q 015029 126 W 126 (414)
Q Consensus 126 ~ 126 (414)
|
T Consensus 200 w 200 (203)
T PF11207_consen 200 W 200 (203)
T ss_pred h
Confidence 6
No 399
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.50 E-value=49 Score=29.64 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATAC 80 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai-~l~p~~~~a~~~~g~~~ 80 (414)
++.|......|+-..|+..|+++-.-.|-. -.+.+.-+.+++..|.|++-..-.+-.- .-+|...-+.--+|.+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 344445555555555555555543322111 1122333333444455554322221110 00122233444467777
Q ss_pred HHcCChHHHHHHHHHHHH
Q 015029 81 MKLEEYETAKVALEKGAS 98 (414)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~ 98 (414)
++.|+|..|...|.+...
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 777777777777776554
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.73 E-value=5.8 Score=23.55 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 16 DYFELAYDLYSQAIEISPNSAELFADRAQ 44 (414)
Q Consensus 16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~ 44 (414)
|+++.|...|++++...|.+..++...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777788888777777777766543
No 401
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=77.67 E-value=13 Score=31.08 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH----
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAI---- 63 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai---- 63 (414)
+++...|+.+++.+++-.+|-+|++||.+.-+- .....|+|..+...|+.+-.+++++.|-
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 567788999999999999999999998863211 2344677888888888887777776554
Q ss_pred HhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 64 ELEPSMSKAYWRKATA-CMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (414)
Q Consensus 64 ~l~p~~~~a~~~~g~~-~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (414)
.|-|..+... ..+ .-.+|--..|+-.| ++..| |+.+...+..
T Consensus 82 tLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~ 124 (140)
T PF10952_consen 82 TLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH 124 (140)
T ss_pred HhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence 4455432211 111 12345555555544 34555 4555444443
No 402
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.56 E-value=53 Score=33.19 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=79.9
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 10 KEAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYWRK 76 (414)
Q Consensus 10 ~~~~~~g~y~-~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl------------~~~~~Al~~~~~Ai~l~p~~~~a~~~~ 76 (414)
...-..|.|+ +++++=.+.+..+|+...++..|=.++... .-+++-+.....++..+|...-+|+.+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3344466665 577777788888999877776655554432 245566788889999999999999999
Q ss_pred HHHHHHcCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029 77 ATACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKEFVG 115 (414)
Q Consensus 77 g~~~~~lg~--y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (414)
.-++.+.+. +..-++.+++++++||.|-......+-+.+
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 999998775 578889999999999998876666555443
No 403
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.53 E-value=7.6 Score=29.28 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|...-..|+|++|+.+|..|++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556788888888899999999988888764
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.48 E-value=9.6 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 74 WRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 74 ~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888887773
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.38 E-value=16 Score=36.75 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------C-CCHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELE-------P-SMSKA 72 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-------p-~~~~a 72 (414)
.+...|.-+...|+++.|+..|.++-..+-+. ...+.+.-.+-+-+++|........+|.+-- + -.+++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 35567888999999999999999965554222 3455666666667899998888888887651 1 14567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 015029 73 YWRKATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
...-|.+.+.+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7888999999999999999887653
No 406
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.06 E-value=4.3 Score=30.83 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|...=..|+|++|+.+|..||+.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 345667777777788888888888888775
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.91 E-value=38 Score=31.54 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHccCH-HHH-HHHHHHHHHh-C-CCCHHHHHH
Q 015029 12 AFIDDYFELAYDLYSQAIEIS---PNS---------AELFADRAQASIKLQNF-TEA-VADANRAIEL-E-PSMSKAYWR 75 (414)
Q Consensus 12 ~~~~g~y~~Ai~~y~~AL~~~---P~~---------~~~~~~ra~~~~kl~~~-~~A-l~~~~~Ai~l-~-p~~~~a~~~ 75 (414)
+|..|+|+.|++...-||+.+ |+. ++-...-+...+..|.. +-+ +..+..+..- + |+...|-+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 356899999999999999974 443 12223333334444441 111 2222222211 1 334444444
Q ss_pred --HHHHHH---------HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 76 --KATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 76 --~g~~~~---------~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
.|.++. ..++...|+.+|++++.++|.. .+...+.++.+.+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~l 224 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRL 224 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHH
Confidence 455552 3457889999999999999864 3666666666443
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.75 E-value=10 Score=35.62 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI 63 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai 63 (414)
...|..++..|+|++|+.+|..++...... ..++..+..|+.++|+.+..+..+-+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 578999999999999999999997653322 4677888999999999999887765544
No 409
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.87 E-value=6.1 Score=38.99 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
+.+...|+.++.+++|+.|...|..|..+... .| | +.+ -.+..++|.+|.+++.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e---i~---G---------e~~-----------~e~~eal~~YGkslLe 95 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDE---IY---G---------EKH-----------LETFEALFLYGKSLLE 95 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH---Hh---h---------hhH-----------HHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666665311 00 0 000 1245667777777777
Q ss_pred cCChHHHHHHH
Q 015029 83 LEEYETAKVAL 93 (414)
Q Consensus 83 lg~y~~A~~~~ 93 (414)
++++..++-++
T Consensus 96 la~~e~~VL~n 106 (400)
T KOG4563|consen 96 LAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhcc
Confidence 77776666544
No 410
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.55 E-value=9.7 Score=28.60 Aligned_cols=30 Identities=40% Similarity=0.414 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|..+-..|+|++|+.+|..|++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666777777778888888777777664
No 411
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.33 E-value=22 Score=36.55 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHH-------HHHHHHhC-----------CC
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVAD-------ANRAIELE-----------PS 68 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~-~~~~~ra~~~~kl~~~~~Al~~-------~~~Ai~l~-----------p~ 68 (414)
+...+..+++|+.++..... =++-|.-+ ......+..+.+.|-++.|+.. |+.|++++ .+
T Consensus 267 ~fk~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~ 345 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD 345 (443)
T ss_dssp HHHHHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred HHHHHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence 34566778888886665531 11222222 2334444444455655555432 34444332 24
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015029 69 MSKAYWRKATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
+..-|-++|.+....|+++-|..||+++.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 68899999999999999999999999854
No 412
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.13 E-value=39 Score=34.94 Aligned_cols=93 Identities=23% Similarity=0.136 Sum_probs=73.9
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCH---
Q 015029 3 TDLEKKAKE-AFIDDYFELAYDLYSQAIEIS---PNS----AELFADRAQASIKLQ-NFTEAVADANRAIELEPSMS--- 70 (414)
Q Consensus 3 e~~~~~g~~-~~~~g~y~~Ai~~y~~AL~~~---P~~----~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~--- 70 (414)
....+.|.. ++...+++.|..++++|..+. |+. ..++.-++.+|.... .+..|...+.+||++....+
T Consensus 47 rt~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ws 126 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWS 126 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhh
Confidence 344555654 455788999999999998873 443 456778899999887 89999999999999987654
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 71 -KAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 71 -~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
+..|.++..+.-..+|..|.+.+.-
T Consensus 127 ckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 127 CKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHhc
Confidence 5678899999999999999887543
No 413
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.84 E-value=39 Score=34.12 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELE----PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (414)
.+...+-.+|+..+.|+.|-....++.--+ ....+..|++|.+..-.++|..|.++|-+|++..|.+.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 344445566777778888876665555211 13467889999999999999999999999999999854
No 414
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=74.75 E-value=12 Score=38.94 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
.+..-|.-.+.......|+.+|.+++...|+....|.+++.++...+ +.-.|+..+..+++++|....+..++.++.
T Consensus 376 ~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 376 KFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 33333333344456788999999999999999999999999988865 456788888899999999888888887776
Q ss_pred HHHhh
Q 015029 115 GLLMQ 119 (414)
Q Consensus 115 ~~~~~ 119 (414)
..+..
T Consensus 456 ~el~r 460 (758)
T KOG1310|consen 456 NELTR 460 (758)
T ss_pred HHHhh
Confidence 55443
No 415
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.37 E-value=10 Score=28.37 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|..+-..|+|++|+.+|..|++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677788888888888888888887764
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.35 E-value=52 Score=32.40 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=65.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------------------- 67 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-------------------- 67 (414)
.-..+.+..+..+-|..-..||+++|.++.+|..+|.-- .-...+|.+.+.+|++...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 345677788888889999999999999999998876432 2234455555555553311
Q ss_pred ---CCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029 68 ---SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP 101 (414)
Q Consensus 68 ---~~~~--a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p 101 (414)
.+.. .-.|+|.|-.++|+..+|...|+...+-.|
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222 345689999999999999999988776666
No 417
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.01 E-value=15 Score=41.22 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------C---------
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------S--------- 68 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-------~--------- 68 (414)
....|+.+|..+.|+.|.-+|.. ..-|..+|..+..+|+|+.|+..+.+|-...- .
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45689999999999999999954 44578899999999999999999988764421 0
Q ss_pred ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 69 ---------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+.+-+-.+-..|...|.|++-+..++.++.+.-.+-.+...++-++
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 1112222334567788888888888888887766555444444444
No 418
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=73.77 E-value=56 Score=32.85 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASIK--LQNFTEAVADANR 61 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-----~~~~~~~ra~~~~k--l~~~~~Al~~~~~ 61 (414)
...++..+|..++|..|...|..++...++ ....+..++.+|.. .-+|++|...+++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345677999999999999999999987542 24556666666654 6688999998883
No 419
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.52 E-value=8.4 Score=39.51 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=71.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~ 87 (414)
++......|+|+.|++....+=..-..-..+..-|-..+.++++++.|+..++-.+.-.-..++..---|..--.+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 56677788999999998866544332223344445566779999999999998888766666666666666677788899
Q ss_pred HHHHHHHHHHHhCCCC
Q 015029 88 TAKVALEKGASLAPGD 103 (414)
Q Consensus 88 ~A~~~~~~a~~l~p~~ 103 (414)
+|.-.+++.+.++|..
T Consensus 409 ~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 409 KSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccCChh
Confidence 9999999999988753
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.02 E-value=23 Score=30.22 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 67 PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
..++..++.+|.+|-.+|+..+|.+.+.+|.+
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33555556666666666666666655555544
No 421
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.89 E-value=30 Score=32.07 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~ 69 (414)
-...+++.+...+||.....-++..|.+......+=..|.-.|+|++|+.-++.+-++.|+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34578899999999999999999999999888888888888999999999999999999975
No 422
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.66 E-value=14 Score=28.03 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=4.8
Q ss_pred HHHHhCCCCHH
Q 015029 95 KGASLAPGDSR 105 (414)
Q Consensus 95 ~a~~l~p~~~~ 105 (414)
+++.+.|+++.
T Consensus 38 q~~~~~pD~~~ 48 (75)
T cd02682 38 QIVKNYPDSPT 48 (75)
T ss_pred HHHHhCCChHH
Confidence 33444444443
No 423
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=72.38 E-value=19 Score=37.64 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 26 ~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.+-|+.+|.|...|+.+-.-+... -++++..+|++.+..-|..+.+|.......+...+|+.-...|.+|+.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455667777777777665555333 777777777777777777777777777777777777777666666654
No 424
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.06 E-value=12 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
|..+..+|...-..|+|++|+.+|..+|+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677788888888888888888887764
No 425
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.83 E-value=1.2e+02 Score=32.12 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=75.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHH-HH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--S----MSKAYWRKATA-CM 81 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--~----~~~a~~~~g~~-~~ 81 (414)
+..--..|++..|..+|++.....|+...+=........++|+.+.+...........+ . ....++..+.. +.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 44445578999999999999888888888878888888888888887752222222222 1 34555666665 44
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
-.++-+.|...+.++..+.|.+..+...+....
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 567788899999999999999887776665555
No 426
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.89 E-value=32 Score=35.88 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCC
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEP-------SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGD 103 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-------~~~~a~~~~g~~~~~lg~-y~~A~~~~~~a~~l~p~~ 103 (414)
.-++.+|.++..+|+...|..+|..++.... -.|.|+|.+|..|..++. ..+|..++.+|.....+.
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 3456689999999999999999999984421 257899999999999999 999999999999887543
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=42 Score=37.11 Aligned_cols=107 Identities=19% Similarity=0.124 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHH------------ccCHHHH--HHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIK------------LQNFTEA--VADA 59 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------~~~~~~ra~~~~k------------l~~~~~A--l~~~ 59 (414)
.-.+.|..+...|.+.+|++.|..+|-.-|-- +.-+...+.-|+- ..+.+++ ++.|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 34678899999999999999999988764321 2334444433322 1244555 2233
Q ss_pred HHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 60 NRAIELEPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 60 ~~Ai~l~p~~~~a~~~~g~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
=.-+.|.|-+...-++.|+ .++.+++|..|.....+.+++.|..+.+.+..
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3333455655444455554 68889999999999999999999887655443
No 428
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.42 E-value=10 Score=38.35 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=51.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~ 64 (414)
...+|++.++.+.|+.+-.+.|-++|..+.-++.+|.|+..+.+|.+|.+-+--|.-
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999877655543
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.28 E-value=27 Score=31.28 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (414)
Q Consensus 51 ~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (414)
.....++.+++.++..| .+..+.+++.++..+|+.++|...+.++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35556677788888778 7789999999999999999999999999999993
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.03 E-value=15 Score=35.36 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~A 62 (414)
+...+..+...|.+.+|+++.++++.++|-+...+..+-+.|..+|+--.|+..|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3456778899999999999999999999999888888889999999876666666543
No 431
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.56 E-value=9.4 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 40 ADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 40 ~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
+.+|.+|+.+|+++.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.45 E-value=49 Score=36.57 Aligned_cols=94 Identities=16% Similarity=0.031 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MS 70 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~ 70 (414)
|+...-+|..+...++.+.|+.+.+.++..-|.+ ..++...|.++.-.|+|.+|+.....+.++... ..
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3445667889999999999999999999987776 578888999999999999999998888887432 23
Q ss_pred HHHHHHHHHHHHcCC--hHHHHHHHHH
Q 015029 71 KAYWRKATACMKLEE--YETAKVALEK 95 (414)
Q Consensus 71 ~a~~~~g~~~~~lg~--y~~A~~~~~~ 95 (414)
-+.+..+.++...|+ |.+....|..
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355667888888883 3444444443
No 433
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.31 E-value=17 Score=37.44 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHH
Q 015029 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKV 91 (414)
Q Consensus 33 P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--------~~~~a~~~~g~~~~~lg~y~~A~~ 91 (414)
-++...|..+|...+..|+++-|..+|.++-..+. .+...+-.++......|++.-|..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 45688999999999999999999999887643321 234444455555555555554443
No 434
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.18 E-value=24 Score=28.52 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=18.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (414)
Q Consensus 43 a~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg 84 (414)
|...+-.|+|..|.+.+.++-+..+.....|+--+.+-..+|
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 333334444555544444444443333344444444444333
No 435
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.97 E-value=22 Score=38.19 Aligned_cols=81 Identities=15% Similarity=0.003 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~ 82 (414)
.++.+.|..++....|++|.++|...- ...+...||+++..|.+- +.+.+.-|.+.+.+-.+|..+..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHh
Confidence 456677777777888888888876521 123455666666666653 23333345666666667777777
Q ss_pred cCChHHHHHHHHH
Q 015029 83 LEEYETAKVALEK 95 (414)
Q Consensus 83 lg~y~~A~~~~~~ 95 (414)
.|.-++|.++|.+
T Consensus 865 vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLR 877 (1189)
T ss_pred hchHHHHHHHHHh
Confidence 7777777766654
No 436
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.43 E-value=1.6e+02 Score=31.29 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEE 85 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-p~~~~a~~~~g~~~~~lg~ 85 (414)
.-...-...|++....-+|.+++--...-...|++.+.-....|+..-|-..+.++.++. +..+..++.-+...-..|+
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 344455678999999999999998888888899999988888899888888888888775 5677888888888999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHH
Q 015029 86 YETAKVALEKGASLAPGDSRF 106 (414)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~ 106 (414)
+..|...|+++..--|+...+
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHHHHhhCCchhhh
Confidence 999999999988666765543
No 437
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=65.11 E-value=1.1e+02 Score=32.55 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=63.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (414)
Q Consensus 14 ~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~ 93 (414)
+++..+.|..+.+.-+--...++..++.+|..+-..+..++|-.+|++.+..+++ .+++..|.-+++.|-..+|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4445566666655545445556777888888888899999999999999999998 78899999999999999998887
Q ss_pred H
Q 015029 94 E 94 (414)
Q Consensus 94 ~ 94 (414)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 438
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.61 E-value=14 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~ 31 (414)
-.+..+|...-..|+|++|+.+|..+|+.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555666666666666666666666553
No 439
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.70 E-value=94 Score=33.35 Aligned_cols=89 Identities=8% Similarity=0.026 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC-------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEIS-------PNS-------------------AELFADRAQASIKLQNFTEAVADA 59 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~-------P~~-------------------~~~~~~ra~~~~kl~~~~~Al~~~ 59 (414)
.--|..+...+..+.|..++.++++.- +.. ..+++..+.+.+-++++..|....
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344667777777777777777777641 111 224455666777789999998888
Q ss_pred HHHHHhCC---------CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 015029 60 NRAIELEP---------SMSKAYWRKATACMKLEEYETAKVALE 94 (414)
Q Consensus 60 ~~Ai~l~p---------~~~~a~~~~g~~~~~lg~y~~A~~~~~ 94 (414)
..+..... ..+..+|..|+.+...|+.+.|...|.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 87776532 247789999999999999999999998
No 440
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.33 E-value=38 Score=37.31 Aligned_cols=78 Identities=22% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (414)
Q Consensus 9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~ 88 (414)
+..+...|..++|+.+|.+.-+.+ + +-..|...|.+.+|+..++.-=++. ...-||+.|..+...++...
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~D-----L---lNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYD-----L---LNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-----H---HHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence 445555666666666665532221 1 2234555667777665554332222 34579999999999999999
Q ss_pred HHHHHHHH
Q 015029 89 AKVALEKG 96 (414)
Q Consensus 89 A~~~~~~a 96 (414)
|+++|+++
T Consensus 877 AleyyEK~ 884 (1416)
T KOG3617|consen 877 ALEYYEKA 884 (1416)
T ss_pred HHHHHHhc
Confidence 99999973
No 441
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.02 E-value=78 Score=32.22 Aligned_cols=96 Identities=19% Similarity=0.052 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------HHHHHHHHHHH-
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQN--------------FTEAVADANRA- 62 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~--------------~~~Al~~~~~A- 62 (414)
.+...|+.+|..++|+.|+..|.-+..-.-++ +.++.-.|.|++..+. ++.|+..|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 35678999999999999999998877743333 2233334444444442 23444445442
Q ss_pred ---HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 63 ---IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 63 ---i~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
+.....-.++.+..+.++..++.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111234556677777788888887777666555433
No 442
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=1e+02 Score=29.93 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcc---------------------------
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQ--------------------------- 50 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~--------~~~~~~ra~~~~kl~--------------------------- 50 (414)
...++.+.+..++++|+..|.+.|...-.- -....+++..|...|
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred -------------CHHHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHcCChHHHHHHHHHHHH
Q 015029 51 -------------NFTEAVADANRAIELEPSMSKAYWR------KATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 51 -------------~~~~Al~~~~~Ai~l~p~~~~a~~~------~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.++.-+..++.+|+-...--+.++| +..+++..|.|.+|+....-.+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 443
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.97 E-value=21 Score=27.04 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=9.9
Q ss_pred ccCHHHHHHHHHHHHHh
Q 015029 49 LQNFTEAVADANRAIEL 65 (414)
Q Consensus 49 l~~~~~Al~~~~~Ai~l 65 (414)
.|+|++|+..|..|++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35666666666665543
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.76 E-value=29 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029 51 NFTEAVADANRAIELEPSMSKAYWRKA 77 (414)
Q Consensus 51 ~~~~Al~~~~~Ai~l~p~~~~a~~~~g 77 (414)
+++.|...|++++...|..+..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555556666655555555554443
No 445
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.09 E-value=24 Score=36.38 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A 89 (414)
.-...+|..-+..|+|.=+....++++-.+|.+..|....|-+|.++|.-.++
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 34556777777888888888888888888888888888888888888875543
No 446
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.89 E-value=55 Score=31.42 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 21 AYDLYSQAIEISPNSAELFADRAQASIKLQ----------------------NFTEAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~----------------------~~~~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
-++.++.-++.+|++.-+++.+|.++.... -.+.|..++.+|+.++|....++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 455666777789999888888888876542 2334555555666666665555555555
Q ss_pred HHHHcCCh
Q 015029 79 ACMKLEEY 86 (414)
Q Consensus 79 ~~~~lg~y 86 (414)
+...+|..
T Consensus 142 ~s~~fgeP 149 (277)
T PF13226_consen 142 ISAYFGEP 149 (277)
T ss_pred HHhhcCCc
Confidence 55555543
No 447
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.37 E-value=1.7e+02 Score=32.57 Aligned_cols=94 Identities=20% Similarity=0.040 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHH
Q 015029 7 KKAKEAFIDDYFELAYDLYSQAIEISPN--S-------AELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKA 72 (414)
Q Consensus 7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~-------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-----~~~a 72 (414)
.++=.+..+.+|.+|-.+..++...-+. . +.+..-+|.+....++++.|+..++.++..=|. ..-+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 4556677889999999888887665433 1 456667888899999999999999999988764 3457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 73 YWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
+...|.+....|+|..|......+.++.
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 7889999999999999999999888763
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.36 E-value=93 Score=32.92 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFAD-RAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATACM 81 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~~~~~~~-ra~~~~kl~~~~~Al~~~~~Ai~l~p--~~~~a~~~~g~~~~ 81 (414)
+..-..+-+.|-+..|++.+.-.+.++|. ++.+... +-+..++..+|+=-+..++..-..+. ..+..-|-+|++++
T Consensus 346 ~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f 425 (665)
T KOG2422|consen 346 FRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARF 425 (665)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHH
Confidence 34445566789999999999999999998 6543332 33333445566665555555432221 12233355666655
Q ss_pred HcCC-----hHHHHHHHHHHHHhCC
Q 015029 82 KLEE-----YETAKVALEKGASLAP 101 (414)
Q Consensus 82 ~lg~-----y~~A~~~~~~a~~l~p 101 (414)
-+.. -..|...+.+|+.+.|
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5443 3568888899998888
No 449
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=56.27 E-value=1.8e+02 Score=30.72 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=59.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHcCCh
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPS-MSKAYWRKATACMKLEEY 86 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--~p~-~~~a~~~~g~~~~~lg~y 86 (414)
..++-.+++.-|...|.-.|...++++.+-......+..+++-..|...|++++.. .++ ..+.|-++-.--+..|+.
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 35666777777777777777777777776666666777777777777777777766 333 234455554445566776
Q ss_pred HHHHHHHHHHHHhCC
Q 015029 87 ETAKVALEKGASLAP 101 (414)
Q Consensus 87 ~~A~~~~~~a~~l~p 101 (414)
..+...=++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666655554444334
No 450
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.98 E-value=1.2e+02 Score=30.13 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---h-------CCCC-----------------------HHHHHHHHHHHHHccCH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIE---I-------SPNS-----------------------AELFADRAQASIKLQNF 52 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~---~-------~P~~-----------------------~~~~~~ra~~~~kl~~~ 52 (414)
.+.|..++..++|.+....++.|=+ . +|.. ..+.+.+|.-|+...++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 4678888888888887776655422 1 1111 34556778888888888
Q ss_pred HHHHHHHHHHHHh
Q 015029 53 TEAVADANRAIEL 65 (414)
Q Consensus 53 ~~Al~~~~~Ai~l 65 (414)
+.|+--|++|...
T Consensus 142 ~~ArVEfnRan~r 154 (449)
T COG3014 142 AKARVEFNRANER 154 (449)
T ss_pred hhhHHHHHHHHHH
Confidence 8887777776643
No 451
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.93 E-value=1.4e+02 Score=30.34 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029 10 KEAFIDDYFELAYDLYSQAIE--ISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~--~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~ 69 (414)
..++..+.|+.|-.+-.+..- ... ..+.+++.+|....-..+|..|..++-.|++..|++
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 455666667777666665542 111 125666667777777777777777777777777753
No 452
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.05 E-value=21 Score=35.42 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Q 015029 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLE 84 (414)
Q Consensus 37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg 84 (414)
.-++..|+-++.+++|..|...|..|..+... +...+...+.++|.-|
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YG 90 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYG 90 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888899999999999999999988654 3466666666665433
No 453
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=54.02 E-value=2.4e+02 Score=29.21 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=59.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChH
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYE 87 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~--~~a~~~~g~~~~~lg~y~ 87 (414)
..++..|++.-|-..|.-.+...|+++.+-...-..++..++-..|...|+.++..-... ...|-.+-.--+.-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 355667777777777777777777776655555566667777777777777777543221 233333333344566666
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 015029 88 TAKVALEKGASLAPGDSR 105 (414)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~ 105 (414)
.+...=++...+-|....
T Consensus 520 ~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 520 NVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHhHHHHHHHHcCcHhH
Confidence 666655666666665443
No 454
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.82 E-value=60 Score=34.51 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=44.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (414)
Q Consensus 25 y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~ 100 (414)
..+||.+.++.. ..+ .+.+++|+++.|...+. ..++..-|-.+|.+....+++..|.+||.++..+.
T Consensus 630 ~e~AL~~s~D~d-~rF---elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 630 KEQALELSTDPD-QRF---ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hHhhhhcCCChh-hhh---hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 444555544432 222 23346677777654432 23566778899999999999999999999987653
No 455
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.82 E-value=63 Score=33.75 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
..+.+-......|+++.+++..+..+...|+.+.|+..++.++...- -....+|-+|.++..+.+|..|...+.....
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD 331 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 33444445557899999999999999999998888888888887211 1456788999999999999999999888776
Q ss_pred hCCCCHHHHHHHH
Q 015029 99 LAPGDSRFTNLIK 111 (414)
Q Consensus 99 l~p~~~~~~~~l~ 111 (414)
+..=...+...+.
T Consensus 332 esdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 332 ESDWSHAFYTYFA 344 (546)
T ss_pred hhhhhHHHHHHHH
Confidence 5543333443333
No 456
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=53.69 E-value=15 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhhhh
Q 015029 355 ALNKFFQEIYADADEDTRRAMKKSFVE 381 (414)
Q Consensus 355 ~~~~~f~~iY~~~d~d~kram~KS~~e 381 (414)
.|.-||..+|.++|++.|..|+.+-.+
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 378899999999999999999987543
No 457
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.00 E-value=36 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 49 LQNFTEAVADANRAIELEPSM----SKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 49 l~~~~~Al~~~~~Ai~l~p~~----~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
....++|+.-|.+++++.+.- .+|+-.+-.++|++++|.+-++.|.+.+-
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 357888888888888888753 45777788888888888888888777553
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.50 E-value=27 Score=26.79 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 015029 18 FELAYDLYSQAIE 30 (414)
Q Consensus 18 y~~Ai~~y~~AL~ 30 (414)
|+.|.+..++||.
T Consensus 5 ~~~A~~~I~kaL~ 17 (79)
T cd02679 5 YKQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444443
No 459
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=52.11 E-value=36 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAE 37 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~ 37 (414)
...|..+...|++++|+.+|-.||...|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 45677777777777777777777777766443
No 460
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.06 E-value=99 Score=28.85 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------------------------------------
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------------------- 35 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------------------------------- 35 (414)
+++...+..+...|+|++++.+..+++..++.-
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~ 81 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKD 81 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHH
Q ss_pred -----------------------------------------HHHHHHHHHHHHHccCH---HHHHHHHHHHHHh------
Q 015029 36 -----------------------------------------AELFADRAQASIKLQNF---TEAVADANRAIEL------ 65 (414)
Q Consensus 36 -----------------------------------------~~~~~~ra~~~~kl~~~---~~Al~~~~~Ai~l------ 65 (414)
.++|..++.+...-.+. +.|...|+.|+.+
T Consensus 82 yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 161 (236)
T PF00244_consen 82 YKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELP 161 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccC
Q ss_pred --CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 015029 66 --EPSMSKAYWRKATACMK-LEEYETAKVALEKGAS 98 (414)
Q Consensus 66 --~p~~~~a~~~~g~~~~~-lg~y~~A~~~~~~a~~ 98 (414)
+|-.....++.++.|+. +|+.+.|....+.++.
T Consensus 162 ~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 162 PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 461
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.70 E-value=1.7e+02 Score=28.89 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHH
Q 015029 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP------NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAY 73 (414)
Q Consensus 3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P------~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~ 73 (414)
+.+.+.|.-+.+-||-+.|++.|.+..+..- +-..+.+.+|..|....-..+-+.-++..++.+.+. -+.-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455566666666666666666555443211 112334445555544444455555555555554431 1233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 74 WRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 74 ~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.+.|+.+....+|.+|...|..++.
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3345556666666666666655443
No 462
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=50.97 E-value=1.3e+02 Score=26.18 Aligned_cols=97 Identities=21% Similarity=0.131 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC--------------------------------HHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-------SPNS--------------------------------AELFADR 42 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-------~P~~--------------------------------~~~~~~r 42 (414)
|-.....+..+..+|+.++|+.++.+|... +|.. .......
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHH
Confidence 445678899999999999999999888664 1221 3456778
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh-C------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 43 AQASIKLQNFTEAVADANRAIEL-E------P-SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 43 a~~~~kl~~~~~Al~~~~~Ai~l-~------p-~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
+.-+++.|+...|+..+..+-.- + | .........+..+...|+|.+|...+..++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888999999987766443211 0 1 1344566788899999999999999988763
No 463
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.88 E-value=1.4e+02 Score=24.50 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
+...|....-.-.+++|-..++- |+..+. .-.+..-|...++.+|+|++|+ .+......+..---.+.|-.++
T Consensus 9 LAElAL~atG~HcH~EA~tIa~w-L~~~~~~~E~v~lIr~~sLmNrG~Yq~AL-----l~~~~~~~pdL~p~~AL~a~kl 82 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADW-LEQEGEMEEVVALIRLSSLMNRGDYQEAL-----LLPQCHCYPDLEPWAALCAWKL 82 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHTT-HHHHH-----HHHTTS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHhhHHHHHHH-----HhcccCCCccHHHHHHHHHHhh
Confidence 34455555666677888887765 444444 3455666778888889999882 2223333344444456667778
Q ss_pred CChHHHHHHHHH
Q 015029 84 EEYETAKVALEK 95 (414)
Q Consensus 84 g~y~~A~~~~~~ 95 (414)
|--..+...+.+
T Consensus 83 GL~~~~e~~l~r 94 (116)
T PF09477_consen 83 GLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 877777776663
No 464
>PF12854 PPR_1: PPR repeat
Probab=48.89 E-value=45 Score=20.67 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANR 61 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~ 61 (414)
...|..+-.+|.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34555566666666666666666543
No 465
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=48.70 E-value=26 Score=26.48 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=8.4
Q ss_pred CChHHHHHHHHHHHH
Q 015029 84 EEYETAKVALEKGAS 98 (414)
Q Consensus 84 g~y~~A~~~~~~a~~ 98 (414)
|+|.+|..+|..++.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666555555543
No 466
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.28 E-value=84 Score=33.47 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=51.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHH---
Q 015029 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKAT--- 78 (414)
Q Consensus 10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--------~~~~a~~~~g~--- 78 (414)
..+++.|+++.|..+.. ..++..-|..+|.+.+..+++..|.+||.+|-.+.. .+...+..+|.
T Consensus 645 elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 34444444444444332 345677899999999999999999999999876643 23333333333
Q ss_pred ----------HHHHcCChHHHHHHHHH
Q 015029 79 ----------ACMKLEEYETAKVALEK 95 (414)
Q Consensus 79 ----------~~~~lg~y~~A~~~~~~ 95 (414)
||+.+|+++++++.+..
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666655544
No 467
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.93 E-value=46 Score=24.32 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=2.9
Q ss_pred HHHHhCC
Q 015029 95 KGASLAP 101 (414)
Q Consensus 95 ~a~~l~p 101 (414)
.++...+
T Consensus 37 ~~~~~~~ 43 (69)
T PF04212_consen 37 QALKSES 43 (69)
T ss_dssp HHHHHST
T ss_pred HHhccCC
Confidence 3344444
No 468
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.85 E-value=1.1e+02 Score=30.25 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 50 ~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
..+-+|+..++.++..+|.+....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4667899999999999999999999999999999999999988874
No 469
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.65 E-value=2.3e+02 Score=26.79 Aligned_cols=91 Identities=18% Similarity=0.004 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------CCCHHH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSKA 72 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~~~~~~~~ra~~~~kl~~~~-~Al~~~~~Ai~l~------p~~~~a 72 (414)
+..-+..+++.|++.-|..+-.-.|+. .+.+.....++..++.....-+ +-....++|+.-. -.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 455566777788877776654333332 2344555566666666554322 2223333343321 147899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 015029 73 YWRKATACMKLEEYETAKVALEK 95 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~ 95 (414)
|..+|..|++.|+|.+|..+|-.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 99999999999999999988854
No 470
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.46 E-value=3.1e+02 Score=31.52 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=64.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH--------------------HHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029 8 KAKEAFIDDYFELAYDLYSQ--------------------AIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~--------------------AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l 65 (414)
.|+.+...+-|++|...|.+ |.+. .-+.+..|..+|.+.+..+...+|+..|-+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence 45556666666666665543 2221 223478899999999999999999988844
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
.+++..|...-.+..+.|.|++-..++..+.+.
T Consensus 1130 -adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1130 -ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred -cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 467788888888999999999999988888764
No 471
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=46.29 E-value=21 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhhh
Q 015029 355 ALNKFFQEIYADADEDTRRAMKKSFV 380 (414)
Q Consensus 355 ~~~~~f~~iY~~~d~d~kram~KS~~ 380 (414)
.|.-||..+|..+|+..|..|+.+..
T Consensus 36 GLGVlFE~~W~~~~~~ek~~m~~~l~ 61 (65)
T TIGR03092 36 GLGVLFEAIWKHANEQEKDEMLETLE 61 (65)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 37889999999999999999998754
No 472
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.09 E-value=47 Score=20.59 Aligned_cols=13 Identities=46% Similarity=0.391 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHH
Q 015029 86 YETAKVALEKGAS 98 (414)
Q Consensus 86 y~~A~~~~~~a~~ 98 (414)
+..|..+|+++-+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 473
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=45.95 E-value=40 Score=34.43 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH-------------------HH-ccCHHHHHHHHHH
Q 015029 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQAS-------------------IK-LQNFTEAVADANR 61 (414)
Q Consensus 4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~-------------------~k-l~~~~~Al~~~~~ 61 (414)
..+..|...+..+++.+++.++.+||+..- .+..+++ |..|- +. -|.+-+-..|..+
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~C-r~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFC-RTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHH-HhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999998621 0111111 11111 00 0112222222222
Q ss_pred HHHh---CCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029 62 AIEL---EPS----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL 117 (414)
Q Consensus 62 Ai~l---~p~----------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 117 (414)
+..- .+. ....|-++-.+|++.|++..|+++-.-.+-.+|++..+...+..-+..+
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l 180 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTML 180 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhcc
Confidence 2211 111 1257888999999999999999999989999999998888877666444
No 474
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.69 E-value=53 Score=32.74 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=48.4
Q ss_pred ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCC
Q 015029 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 294 (414)
Q Consensus 219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 294 (414)
+=++-.=+|+|+++|...-.+..++.++ |.|.+.+..-..=..+.+|-.+..|+.-.+.|.+.++-+++.|+...
T Consensus 64 ~isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 64 FISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred cccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 4444455666777765444444555444 66665443211112456778888899999999999999999987643
No 475
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.23 E-value=1.2e+02 Score=22.00 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH--HHHHHHccCHHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADR--AQASIKLQNFTEAVAD 58 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~r--a~~~~kl~~~~~Al~~ 58 (414)
...|..++..|+|=+|=+.+..+-...+.. ...++++ |..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456777888888888877777766554433 1223333 3334455677666554
No 476
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.67 E-value=92 Score=27.73 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (414)
Q Consensus 19 ~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p 67 (414)
...++...+.+...|+ +..+.+++.++..+|+.++|.+...++..+-|
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555666666774 77899999999999999999999999999999
No 477
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.54 E-value=2e+02 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEIS 32 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~ 32 (414)
.|..+...|..++.+++..+.+..+
T Consensus 8 eAK~~ildG~V~qGveii~k~v~Ss 32 (161)
T PF09205_consen 8 EAKERILDGDVKQGVEIIEKTVNSS 32 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhchHHHHHHHHHHHcCcC
Confidence 3445555566666666555555443
No 478
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=1.3e+02 Score=29.55 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhC
Q 015029 19 ELAYDLYSQAIEIS 32 (414)
Q Consensus 19 ~~Ai~~y~~AL~~~ 32 (414)
.+||.+..+|++.+
T Consensus 8 ~kaI~lv~kA~~eD 21 (439)
T KOG0739|consen 8 QKAIDLVKKAIDED 21 (439)
T ss_pred HHHHHHHHHHhhhc
Confidence 46666666666654
No 479
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.38 E-value=3.2e+02 Score=26.27 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=70.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH-HHHHHHH--HHHccCHH----HHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAEL-FADRAQA--SIKLQNFT----EAVADANRAIELEPSMSKAYWRKAT 78 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~-~~~ra~~--~~kl~~~~----~Al~~~~~Ai~l~p~~~~a~~~~g~ 78 (414)
....++..++|++--+.|.+......+ ..+. |+..... ++.+.... .-+..++.=+...|.+.-+|+.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567899999999999999888765322 1111 2222111 22222111 2444555556778999999999888
Q ss_pred HHHHcC----------------------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKEFV 114 (414)
Q Consensus 79 ~~~~lg----------------------~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (414)
+++... ..+.|...+.+++.++|....+...+-.+-
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 777654 136788888899999998877666665555
No 480
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.25 E-value=1.5e+02 Score=22.43 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHH-------HHHHHhCCCCH
Q 015029 76 KATACMKLEEYETAKVAL-------EKGASLAPGDS 104 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~-------~~a~~l~p~~~ 104 (414)
.|+-+-..|+|++|+.+| ..++...|+..
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 333344444444444444 44445565443
No 481
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.72 E-value=57 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 015029 73 YWRKATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 73 ~~~~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
+.++|+-+-..|+|.+|+.+|..++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444555566666665555544
No 482
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.50 E-value=3.6e+02 Score=26.63 Aligned_cols=90 Identities=17% Similarity=0.023 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Q 015029 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWR 75 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--~p~~~~a~~~ 75 (414)
...|..|-+.++|..|-+.+. ++.++.. -...++.+|.+|+..++-.+|..+.+++--+ +..+......
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie 185 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIE 185 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHH
Confidence 456788888888888887763 2333221 1456778888999999888888888877544 2345555555
Q ss_pred HHHHHHH----cCChHHHHHHHHHH
Q 015029 76 KATACMK----LEEYETAKVALEKG 96 (414)
Q Consensus 76 ~g~~~~~----lg~y~~A~~~~~~a 96 (414)
+-.||.+ .++|=+|...|-+.
T Consensus 186 ~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 186 YKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 44555555555443
No 483
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.19 E-value=1.7e+02 Score=29.02 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029 8 KAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (414)
Q Consensus 8 ~g~~~~~~g~y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~ 79 (414)
++...-+..-...++......... -.....++..||..+.++|+-.+|...|++|+.+.++..+..|.+...
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344444444455566655444433 223456778899999999999999999999999999887766655544
No 484
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.86 E-value=3.7e+02 Score=26.56 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHH--HHhCCCCHH
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MSKAYWRKATACMKLEEYETAKVALEKG--ASLAPGDSR 105 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--------~~~a~~~~g~~~~~lg~y~~A~~~~~~a--~~l~p~~~~ 105 (414)
..+...+|..|.+.++|..|...+ .+|.++.. -...+.++|.+|...++-.+|..+..++ +.-+..|+.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 456778889999999998886554 23333321 2346788999999999999999888875 344568888
Q ss_pred HHHHHHHHHH
Q 015029 106 FTNLIKEFVG 115 (414)
Q Consensus 106 ~~~~l~~~~~ 115 (414)
+...+.-|+.
T Consensus 182 Lqie~kvc~A 191 (399)
T KOG1497|consen 182 LQIEYKVCYA 191 (399)
T ss_pred HHHHHHHHHH
Confidence 9888888883
No 485
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.77 E-value=58 Score=19.66 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHH
Q 015029 51 NFTEAVADANRAIE 64 (414)
Q Consensus 51 ~~~~Al~~~~~Ai~ 64 (414)
++.+|+..+++|..
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 486
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.71 E-value=2.6e+02 Score=36.17 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC----hHHHHHHHHHHHHhCC
Q 015029 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL----EE----YETAKVALEKGASLAP 101 (414)
Q Consensus 36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l----g~----y~~A~~~~~~a~~l~p 101 (414)
++.+..+|..+.++|++++|-..|..|++++-..+++|+..|..+.+. +. -..|..||-+|....-
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 678889999999999999999999999999999999999999876553 11 2456777777766553
No 487
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=40.64 E-value=25 Score=26.01 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhhh
Q 015029 355 ALNKFFQEIYADADEDTRRAMKKSFV 380 (414)
Q Consensus 355 ~~~~~f~~iY~~~d~d~kram~KS~~ 380 (414)
.|.-||..+|.++|+..|..|+.+..
T Consensus 39 GLGVlFE~~W~~~~~~ek~~m~~~l~ 64 (68)
T PRK02955 39 GLGVLFEVIWKNADENEKDEMLETLE 64 (68)
T ss_pred cchhHHHHHHHhcCHHHHHHHHHHHH
Confidence 37889999999999999999998754
No 488
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=40.53 E-value=47 Score=19.18 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=11.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 015029 76 KATACMKLEEYETAKVALEKGA 97 (414)
Q Consensus 76 ~g~~~~~lg~y~~A~~~~~~a~ 97 (414)
+-.+|.+.|++++|...|.+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHh
Confidence 4445555555555555555443
No 489
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.13 E-value=83 Score=18.86 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029 22 YDLYSQAIEISPNSAELFADRAQASIK 48 (414)
Q Consensus 22 i~~y~~AL~~~P~~~~~~~~ra~~~~k 48 (414)
+.+-..+|..+|.|..++..|-.++.+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 445555666666666666666555443
No 490
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.83 E-value=1.4e+02 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (414)
Q Consensus 72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l 99 (414)
..+..|..-+..|+|..|...+.++.+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455555666666666666666666444
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.64 E-value=1.3e+02 Score=31.69 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 54 EAVADANRAIELE-----PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 54 ~Al~~~~~Ai~l~-----p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
.++..|.+||... ..+.-.|.++|-.|++.++|.+|+.++..+-.
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665542 34667888899999999999999988877644
No 492
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.61 E-value=2e+02 Score=27.74 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHH----HHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADR----AQASIKLQNFTEAVADANRAIELEPSMS 70 (414)
Q Consensus 5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------~~~~~~r----a~~~~kl~~~~~Al~~~~~Ai~l~p~~~ 70 (414)
+-..++.++...||..|++.++++++.--++ .+.-+.+ -+|+..++++.+++...-+-...-...+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 4456788999999999999999999853111 1222222 2567788999999998877776655566
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029 71 KAYWRKATAC-MKLEEYETAKVALEKGASLAPGDSRFTN 108 (414)
Q Consensus 71 ~a~~~~g~~~-~~lg~y~~A~~~~~~a~~l~p~~~~~~~ 108 (414)
.--+.+++++ ..++++....+ .-...-.+|+|..+..
T Consensus 118 pkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~ 155 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPE 155 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchh
Confidence 6667777765 46777765444 4556667888876544
No 493
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.48 E-value=78 Score=34.01 Aligned_cols=91 Identities=19% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH--------------
Q 015029 6 EKKAKEAFIDDYFELAYDL----------YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR-------------- 61 (414)
Q Consensus 6 ~~~g~~~~~~g~y~~Ai~~----------y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~-------------- 61 (414)
+..|..+...|+..+|+.+ |+-+-+++-..-+.+...+..+.++..+.-|.+.|.+
T Consensus 707 kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~ 786 (1081)
T KOG1538|consen 707 KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVET 786 (1081)
T ss_pred HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeec
Confidence 4456677788888888875 2223333333334444444444444444443333322
Q ss_pred -----HHHhC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029 62 -----AIELE---PS-MSKAYWRKATACMKLEEYETAKVALEKG 96 (414)
Q Consensus 62 -----Ai~l~---p~-~~~a~~~~g~~~~~lg~y~~A~~~~~~a 96 (414)
|+++. |. ....|+..|+.+....+|.+|...|.++
T Consensus 787 ~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 22222 22 3457889999999999999999988876
No 494
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=39.43 E-value=2.2e+02 Score=23.51 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHc
Q 015029 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR---------AIELEPSMSKAYWRKATACMKL 83 (414)
Q Consensus 13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~---------Ai~l~p~~~~a~~~~g~~~~~l 83 (414)
...+....++.++...+..++.++..+..+..+|.+.. -.+.+..+.. |+++-... ..+-....+|.+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k~ 95 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKKD 95 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHhh
Confidence 34678999999999999988877878887887777643 3444444431 22221111 1122344455666
Q ss_pred CChHHHHHHHH
Q 015029 84 EEYETAKVALE 94 (414)
Q Consensus 84 g~y~~A~~~~~ 94 (414)
|++.+|+..+-
T Consensus 96 ~~~~~Al~~~l 106 (140)
T smart00299 96 GNFKDAIVTLI 106 (140)
T ss_pred cCHHHHHHHHH
Confidence 77776666543
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.10 E-value=2.6e+02 Score=24.58 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHccCHHHHHHHHHHHHHhC
Q 015029 47 IKLQNFTEAVADANRAIELE 66 (414)
Q Consensus 47 ~kl~~~~~Al~~~~~Ai~l~ 66 (414)
++.|+|+.++.+|.+|-.+-
T Consensus 97 i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 45677777777777777664
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.79 E-value=3e+02 Score=26.88 Aligned_cols=83 Identities=8% Similarity=-0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCh
Q 015029 19 ELAYDLYSQAIEI-SPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEY 86 (414)
Q Consensus 19 ~~Ai~~y~~AL~~-~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------~~~~a~~~~g~~~~~lg~y 86 (414)
++-|+.+++.|+. ..+| ..++.++|..|.+.++.+.+.+.+.+.++.+- +....-.|+|.+|-.+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 4445555555543 1222 77788888888887777777777766665432 1233445566655555545
Q ss_pred HHHHHHHHHHHHhCC
Q 015029 87 ETAKVALEKGASLAP 101 (414)
Q Consensus 87 ~~A~~~~~~a~~l~p 101 (414)
.+.++...-.++...
T Consensus 172 ~e~lE~~~~~iEkGg 186 (412)
T COG5187 172 EESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHhCC
Confidence 555554444444433
No 497
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.47 E-value=3e+02 Score=24.87 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHH----HHHHHHHHHHcc----------------CHHHHHHHH
Q 015029 2 ATDLEKKAKEAFIDDYFELAYDLY--SQAIEISPNSAEL----FADRAQASIKLQ----------------NFTEAVADA 59 (414)
Q Consensus 2 Ae~~~~~g~~~~~~g~y~~Ai~~y--~~AL~~~P~~~~~----~~~ra~~~~kl~----------------~~~~Al~~~ 59 (414)
.+-++..+..+|+.|++++--+.- -++|-..|....+ .+..++++.+.. =++.|+..+
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~ 92 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVL 92 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHH
Confidence 345778899999999988754432 2344445544333 336677776642 244577777
Q ss_pred HHHHHhCCCC-------HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029 60 NRAIELEPSM-------SK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (414)
Q Consensus 60 ~~Ai~l~p~~-------~~-a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (414)
+..-+-.+.. -. ..-....+|...|.|++|.+.|++... +|+....+..|
T Consensus 93 ~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL 150 (200)
T cd00280 93 ESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKL 150 (200)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHH
Confidence 6655443321 11 122234468999999999999999998 88777664433
No 498
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=38.23 E-value=45 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhhhh
Q 015029 354 AALNKFFQEIYADADEDTRRAMKKSFV 380 (414)
Q Consensus 354 ~~~~~~f~~iY~~~d~d~kram~KS~~ 380 (414)
+.+.++.++=+..-++|+|+++.+|.+
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLi 44 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALI 44 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 458899999999999999999999975
No 499
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=38.11 E-value=1.2e+02 Score=29.85 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELE--P--SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (414)
Q Consensus 33 P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p--~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~ 98 (414)
|+-.+.++..|...+..|+|..|-.++-....+- + +...+.+..--.-..+.+++.|++.+.+..+
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334455555555555555555544332222221 1 1222222222223334455555555555444
No 500
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.89 E-value=1e+02 Score=30.66 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015029 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61 (414)
Q Consensus 16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~ 61 (414)
+..-+|+.++..++..+|.|..+.+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456899999999999999999999999999999999999888854
Done!