Query 015032
Match_columns 414
No_of_seqs 293 out of 542
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.2 9.8E-12 2.1E-16 106.1 5.1 55 342-398 34-89 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 2.7E-05 5.9E-10 48.4 3.2 20 107-126 2-21 (21)
3 smart00015 IQ Short calmodulin 97.2 0.00032 7E-09 45.6 2.9 22 105-126 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.1 0.0013 2.7E-08 74.2 7.4 60 105-168 672-732 (862)
5 PTZ00014 myosin-A; Provisional 95.5 0.016 3.5E-07 65.6 5.2 41 107-147 778-819 (821)
6 KOG0520 Uncharacterized conser 95.4 0.014 2.9E-07 66.6 4.1 68 101-168 805-880 (975)
7 KOG0160 Myosin class V heavy c 94.1 0.11 2.5E-06 58.9 7.1 63 104-169 694-756 (862)
8 PF00612 IQ: IQ calmodulin-bin 93.3 0.097 2.1E-06 32.4 2.7 19 129-147 2-20 (21)
9 COG5022 Myosin heavy chain [Cy 91.3 0.36 7.7E-06 57.3 6.2 63 105-168 744-807 (1463)
10 KOG2128 Ras GTPase-activating 89.3 0.84 1.8E-05 54.1 6.9 64 105-168 564-636 (1401)
11 smart00015 IQ Short calmodulin 88.0 0.52 1.1E-05 30.5 2.5 19 129-147 4-22 (26)
12 KOG0520 Uncharacterized conser 81.7 2.1 4.6E-05 49.5 5.3 62 108-169 835-929 (975)
13 KOG0164 Myosin class I heavy c 79.4 4.1 8.9E-05 46.0 6.3 53 106-168 696-748 (1001)
14 PTZ00014 myosin-A; Provisional 74.8 5.9 0.00013 45.5 6.2 37 130-169 779-815 (821)
15 KOG4427 E3 ubiquitin protein l 72.7 3.2 6.9E-05 47.1 3.3 26 102-127 26-51 (1096)
16 KOG0377 Protein serine/threoni 71.1 6.3 0.00014 42.4 4.9 34 104-137 15-48 (631)
17 KOG0942 E3 ubiquitin protein l 65.2 4.3 9.4E-05 46.7 2.5 26 102-127 25-50 (1001)
18 KOG2128 Ras GTPase-activating 55.7 13 0.00028 44.6 4.2 45 105-149 591-643 (1401)
19 KOG0163 Myosin class VI heavy 55.5 14 0.0003 42.3 4.2 35 105-139 812-847 (1259)
20 KOG0161 Myosin class II heavy 49.7 21 0.00046 44.6 4.9 33 109-141 776-812 (1930)
21 KOG0162 Myosin class I heavy c 45.0 17 0.00038 41.4 2.9 40 106-147 696-735 (1106)
22 KOG0161 Myosin class II heavy 41.8 28 0.00062 43.6 4.3 40 129-168 774-813 (1930)
23 PF08763 Ca_chan_IQ: Voltage g 37.6 37 0.00079 24.3 2.6 21 105-125 8-28 (35)
24 KOG1767 40S ribosomal protein 30.4 35 0.00076 30.0 1.9 19 116-134 72-92 (110)
25 KOG0165 Microtubule-associated 27.8 95 0.0021 35.9 5.1 24 104-127 941-964 (1023)
26 KOG0942 E3 ubiquitin protein l 22.0 91 0.002 36.5 3.7 31 122-152 22-53 (1001)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.23 E-value=9.8e-12 Score=106.06 Aligned_cols=55 Identities=44% Similarity=0.573 Sum_probs=43.8
Q ss_pred CCcchhhhHHHHHhhhccCCCcccccccccccCCCCCCCCccccccCCCC-ccccccC
Q 015032 342 FPTYMAVTESAKAKARSMSTPKQRVAFLDSCFDHSMPYRNEISLRSSYNG-ESVTRDA 398 (414)
Q Consensus 342 ~p~yMa~T~SaKaK~rs~s~pk~r~~~~~~~s~~~~~~k~rlSlpss~n~-~~~~~~~ 398 (414)
+|+||++|||||||+|++|.||+|++..+.. ...+.++|||||...++ ...+..+
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~--~~~~~~kR~S~~~~~~~~~~~~~~~ 89 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERA--EKQSSKKRLSLPGSSNSGSSSSRSP 89 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccc--cccccccccccCCCCCCCcCCCCCC
Confidence 9999999999999999999999999986543 34567899999976554 4444443
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.77 E-value=2.7e-05 Score=48.44 Aligned_cols=20 Identities=55% Similarity=0.572 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKALR 126 (414)
Q Consensus 107 ~AAi~IQtafRGylARral~ 126 (414)
.|||.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999885
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.21 E-value=0.00032 Score=45.64 Aligned_cols=22 Identities=50% Similarity=0.546 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALR 126 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~ 126 (414)
.+.+|+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.05 E-value=0.0013 Score=74.16 Aligned_cols=60 Identities=27% Similarity=0.219 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
...+++.||+.||||+.|+.|.. .++++-+|+++||.++|+ ..+ ..-+++.||..+|++.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~ 732 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYL 732 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHH
Confidence 45677889999999999999999 588889999999999999 222 6677888888888775
No 5
>PTZ00014 myosin-A; Provisional
Probab=95.54 E-value=0.016 Score=65.60 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 107 ~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~ 147 (414)
..++.||.++|||++|+.|.. +.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999999 78999999999999998753
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.44 E-value=0.014 Score=66.58 Aligned_cols=68 Identities=28% Similarity=0.291 Sum_probs=53.3
Q ss_pred chhhhhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHhh-------cchHHHHHHHHHHHH
Q 015032 101 TARDRNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQATATLKC-------LPSNGEKQSKVQEKR 168 (414)
Q Consensus 101 ~~~~ee~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~~~tlr~-------~qA~v~iQs~iR~r~ 168 (414)
.......||..||.-||||+.|+.+.. ..=+|++|+-|||+.+|+++...... .-++-++|.-+|+++
T Consensus 805 ~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk 880 (975)
T KOG0520|consen 805 DDRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFK 880 (975)
T ss_pred ccccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccc
Confidence 444567899999999999999999999 57899999999999999999743333 344455555555554
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=94.12 E-value=0.11 Score=58.93 Aligned_cols=63 Identities=25% Similarity=0.188 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 015032 104 DRNLAAIKIQSAFRAHLARKALRALKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRD 169 (414)
Q Consensus 104 ~ee~AAi~IQtafRGylARral~aLkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~ 169 (414)
..-.+++.||..+||+++|+........+.+|..+|++..|+++ .....+++.+|+-+|+...
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~ 756 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLA 756 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 34578889999999999997222346778889999999999988 4556788889999988863
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=93.27 E-value=0.097 Score=32.38 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~ 147 (414)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999986
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=91.26 E-value=0.36 Score=57.31 Aligned_cols=63 Identities=27% Similarity=0.219 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
-...+++||+++||++.||.|.+ ++.+..+|.+.+|..+|+.....+. .....++|..++...
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 807 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLG 807 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHh
Confidence 46789999999999999999888 8999999999999988876643332 445566676666554
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=89.28 E-value=0.84 Score=54.10 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhhhhHHH---H-HHHHh-hhhHHHHHHhhhhHHHHHHHH----HHHhhcchHHHHHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLA---R-KALRA-LKGLVKLQAIVRGRAVRRQAT----ATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 105 ee~AAi~IQtafRGylA---R-ral~a-LkglVrLQalvRG~~vRrq~~----~tlr~~qA~v~iQs~iR~r~ 168 (414)
..-..+.||.+.|||+. + ..+.. .+-||.+|++.||+++|+.+. -...||.+.+.||+-+|.+.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~ 636 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFP 636 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 44567899999999993 2 22222 689999999999999999987 34458999999999999987
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=88.04 E-value=0.52 Score=30.47 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.3
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~ 147 (414)
+.++.||+.+||+.+|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999987
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=81.71 E-value=2.1 Score=49.45 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhHHHHHHHHhh--------hhHH---HHHHhhhhHHHHHHH----------------------HHHHhhc
Q 015032 108 AAIKIQSAFRAHLARKALRAL--------KGLV---KLQAIVRGRAVRRQA----------------------TATLKCL 154 (414)
Q Consensus 108 AAi~IQtafRGylARral~aL--------kglV---rLQalvRG~~vRrq~----------------------~~tlr~~ 154 (414)
-+|+||+++|||-.|+.|+.+ +-+. ++|.-+||+..|.-. ....+--
T Consensus 835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~ 914 (975)
T KOG0520|consen 835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT 914 (975)
T ss_pred ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999884 1121 237777777655432 2333446
Q ss_pred chHHHHHHHHHHHHH
Q 015032 155 PSNGEKQSKVQEKRD 169 (414)
Q Consensus 155 qA~v~iQs~iR~r~~ 169 (414)
+|+++||+.+|....
T Consensus 915 ~A~~~VQsm~rs~~a 929 (975)
T KOG0520|consen 915 RAVVRVQSMFRSPKA 929 (975)
T ss_pred HHHHHHHHHhcCHHH
Confidence 789999999888763
No 13
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=79.38 E-value=4.1 Score=46.00 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 106 NLAAIKIQSAFRAHLARKALRALKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~aLkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
..-++.||.+|||+++|..|+.++....|=.-.|.+-+|- .+..||.++|+.+
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~ks----------~v~el~~~~rg~k 748 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLKS----------YVQELQRRFRGAK 748 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhh
Confidence 4568999999999999999999765544422556444433 2335677777775
No 14
>PTZ00014 myosin-A; Provisional
Probab=74.77 E-value=5.9 Score=45.45 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=31.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 015032 130 GLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRD 169 (414)
Q Consensus 130 glVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~ 169 (414)
-++.||+.+||+..|+.+ ++..++++.||+.+|++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~ 815 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLV 815 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998 4557799999999999873
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.71 E-value=3.2 Score=47.05 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHh
Q 015032 102 ARDRNLAAIKIQSAFRAHLARKALRA 127 (414)
Q Consensus 102 ~~~ee~AAi~IQtafRGylARral~a 127 (414)
..+.+.||+.||..+|||++|+.+..
T Consensus 26 qrrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 26 QRRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999884
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=71.07 E-value=6.3 Score=42.43 Aligned_cols=34 Identities=29% Similarity=0.143 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHh
Q 015032 104 DRNLAAIKIQSAFRAHLARKALRALKGLVKLQAI 137 (414)
Q Consensus 104 ~ee~AAi~IQtafRGylARral~aLkglVrLQal 137 (414)
+--.||+.||.-||+|.||...+..-..--+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 4568999999999999999999887666677765
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.24 E-value=4.3 Score=46.67 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHh
Q 015032 102 ARDRNLAAIKIQSAFRAHLARKALRA 127 (414)
Q Consensus 102 ~~~ee~AAi~IQtafRGylARral~a 127 (414)
.+++|.+|++||+.+|||++|+..+.
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999988775
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=55.73 E-value=13 Score=44.64 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHhh--------hhHHHHHHhhhhHHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALRAL--------KGLVKLQAIVRGRAVRRQATA 149 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~aL--------kglVrLQalvRG~~vRrq~~~ 149 (414)
...-++.+|+++|||++|+.+..+ ..++.||+.+|+..-|..+..
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 344589999999999999988763 689999999999999999843
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=55.48 E-value=14 Score=42.29 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhh
Q 015032 105 RNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVR 139 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~a-LkglVrLQalvR 139 (414)
...+.+++|...||||+|+.++- +.|++++-+|..
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~k 847 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALLK 847 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 45678999999999999999988 788887766543
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=49.74 E-value=21 Score=44.59 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=16.1
Q ss_pred HHHHHHhhhhHHHHHHHHh----hhhHHHHHHhhhhH
Q 015032 109 AIKIQSAFRAHLARKALRA----LKGLVKLQAIVRGR 141 (414)
Q Consensus 109 Ai~IQtafRGylARral~a----LkglVrLQalvRG~ 141 (414)
.+.+|+++||||+|+.|.. +.+|..||.=+|-+
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665555544 23444444433333
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=45.01 E-value=17 Score=41.40 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhhhhHHHHHHhhhhHHHHHHH
Q 015032 106 NLAAIKIQSAFRAHLARKALRALKGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~aLkglVrLQalvRG~~vRrq~ 147 (414)
+-=|.+||.|||.|++||.|..++--- =-|+-|.--||.+
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree~--t~ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREEA--TKLLLGKKERRRY 735 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchHHHHHH
Confidence 446899999999999999988753110 1244565556655
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.84 E-value=28 Score=43.57 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
.-|+.|||.|||+++|+.+..-+..+.++..||..+|.+.
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999988899999999999999885
No 23
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=37.58 E-value=37 Score=24.31 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhhhhHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKAL 125 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral 125 (414)
+--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999998864
No 24
>KOG1767 consensus 40S ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=30.39 E-value=35 Score=30.01 Aligned_cols=19 Identities=53% Similarity=0.767 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHhh--hhHHHH
Q 015032 116 FRAHLARKALRAL--KGLVKL 134 (414)
Q Consensus 116 fRGylARral~aL--kglVrL 134 (414)
++|-|||.+|+.| +|||+.
T Consensus 72 IngsLAr~alr~L~~kG~Ik~ 92 (110)
T KOG1767|consen 72 INGSLARAALRELSNKGVIKQ 92 (110)
T ss_pred hchHHHHHHHHHHHhcchHHH
Confidence 6899999999996 899886
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=27.84 E-value=95 Score=35.91 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHh
Q 015032 104 DRNLAAIKIQSAFRAHLARKALRA 127 (414)
Q Consensus 104 ~ee~AAi~IQtafRGylARral~a 127 (414)
..-.||+.||.+.|||++|+.|+-
T Consensus 941 nkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999984
No 26
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=91 Score=36.51 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=24.5
Q ss_pred HHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHh
Q 015032 122 RKALRA-LKGLVKLQAIVRGRAVRRQATATLK 152 (414)
Q Consensus 122 Rral~a-LkglVrLQalvRG~~vRrq~~~tlr 152 (414)
|...+. .++.|.+|++.||+.+|++.....|
T Consensus 22 Ree~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 22 REEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 444444 7999999999999999998865544
Done!