Query 015032
Match_columns 414
No_of_seqs 293 out of 542
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 1.9E-09 6.5E-14 81.2 6.2 53 104-157 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 4.1E-08 1.4E-12 71.0 6.0 41 107-147 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.4 4.3E-07 1.5E-11 102.6 8.2 65 103-168 813-878 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.3 8.9E-07 3E-11 100.0 9.3 64 106-170 768-832 (1080)
5 2l53_B CAM, voltage-gated sodi 97.9 6.1E-06 2.1E-10 55.7 2.3 25 103-127 3-27 (31)
6 2kxw_B Sodium channel protein 97.7 1.4E-05 4.7E-10 52.4 2.2 22 103-124 3-24 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.4 0.00027 9.1E-09 50.8 5.4 40 129-169 4-43 (48)
8 1wdc_A Scallop myosin; calcium 96.7 0.0027 9.3E-08 48.4 5.6 39 107-145 7-49 (64)
9 2bl0_A Major plasmodial myosin 96.5 0.0026 8.8E-08 48.4 4.6 37 132-168 8-44 (63)
10 2ix7_C Myosin-5A; contractIle 96.2 0.0064 2.2E-07 45.2 5.1 38 129-169 6-43 (58)
11 1kk8_A Myosin heavy chain, str 96.2 0.0045 1.5E-07 68.5 5.8 42 106-147 779-824 (837)
12 1wdc_A Scallop myosin; calcium 96.1 0.0074 2.5E-07 45.9 5.0 40 129-168 7-46 (64)
13 2bl0_A Major plasmodial myosin 96.1 0.0068 2.3E-07 46.0 4.8 41 107-147 5-49 (63)
14 3gn4_A Myosin-VI; unconvention 95.7 0.0099 3.4E-07 53.2 4.7 35 104-138 43-78 (148)
15 1i84_S Smooth muscle myosin he 94.4 0.032 1.1E-06 63.6 5.2 42 106-147 792-837 (1184)
16 4dck_A Sodium channel protein 91.2 0.13 4.6E-06 46.7 3.5 26 102-127 126-151 (168)
17 1kk8_A Myosin heavy chain, str 87.2 0.95 3.2E-05 50.2 7.2 41 129-169 780-820 (837)
18 1w7j_A Myosin VA; motor protei 82.8 0.69 2.4E-05 51.0 3.6 24 106-129 768-791 (795)
19 1i84_S Smooth muscle myosin he 80.1 2.4 8.4E-05 48.2 6.9 40 129-168 793-832 (1184)
20 4anj_A Unconventional myosin-V 77.9 2.5 8.6E-05 48.0 6.0 42 105-147 774-816 (1052)
21 3gn4_A Myosin-VI; unconvention 56.8 15 0.00052 32.7 5.3 20 129-148 46-65 (148)
22 2f3y_B Voltage-dependent L-typ 28.5 33 0.0011 22.0 2.0 19 108-126 4-22 (26)
23 2be6_D Voltage-dependent L-typ 26.8 45 0.0015 23.1 2.6 22 105-126 10-31 (37)
24 3dvk_B Voltage-dependent R-typ 25.4 27 0.00091 21.9 1.1 18 105-122 5-22 (23)
25 3bxl_B CAM, voltage-dependent 21.4 58 0.002 20.9 2.1 18 107-124 3-20 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.91 E-value=1.9e-09 Score=81.19 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhh-hhHHHHHHhhhhHHHHHHHHHHHhhcchH
Q 015032 104 DRNLAAIKIQSAFRAHLARKALRAL-KGLVKLQAIVRGRAVRRQATATLKCLPSN 157 (414)
Q Consensus 104 ~ee~AAi~IQtafRGylARral~aL-kglVrLQalvRG~~vRrq~~~tlr~~qA~ 157 (414)
..+.||+.||+.||||++|+.|..+ .++|.||+.+||+.+|+.+. .++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 4678999999999999999999995 69999999999999999994 44443433
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.1e-08 Score=71.04 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh-h--hHHHHHHhhhhHHHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKALRAL-K--GLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 107 ~AAi~IQtafRGylARral~aL-k--glVrLQalvRG~~vRrq~ 147 (414)
.|||.||+.+|||++|+.+..+ + ++|.||+.+||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 4899999999999999999985 3 899999999999999975
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.38 E-value=4.3e-07 Score=102.57 Aligned_cols=65 Identities=28% Similarity=0.204 Sum_probs=54.8
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 103 RDRNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 103 ~~ee~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
.+++.||+.||+.||||++|+.|.. ..++|.||+.+||+.+|+++. .++...+++.||+.+|++.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l 878 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWL 878 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999 689999999999999999884 4455567777777777765
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.33 E-value=8.9e-07 Score=100.05 Aligned_cols=64 Identities=25% Similarity=0.198 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 015032 106 NLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRDA 170 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~~ 170 (414)
..||+.||+.||||++|+.|+. ..+++.||+.+||+.+|+.+ ..++...|++.||+.+|++..+
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~R 832 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVR 832 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHH
Confidence 5799999999999999999999 58999999999999999998 5567889999999999999743
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=6.1e-06 Score=55.70 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHh
Q 015032 103 RDRNLAAIKIQSAFRAHLARKALRA 127 (414)
Q Consensus 103 ~~ee~AAi~IQtafRGylARral~a 127 (414)
..||.||+.||.|||+||.|+.+..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3689999999999999999987653
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.71 E-value=1.4e-05 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHhhhhHHHHHH
Q 015032 103 RDRNLAAIKIQSAFRAHLARKA 124 (414)
Q Consensus 103 ~~ee~AAi~IQtafRGylARra 124 (414)
..||.||+.||.|||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999864
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00027 Score=50.76 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=35.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRD 169 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~ 169 (414)
+++|.||+.+||.++|+++ ..++...|++.||+.+|++..
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~ 43 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSI 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHH
Confidence 5789999999999999999 455667899999999999874
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.68 E-value=0.0027 Score=48.35 Aligned_cols=39 Identities=33% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh----hhHHHHHHhhhhHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKALRAL----KGLVKLQAIVRGRAVRR 145 (414)
Q Consensus 107 ~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRr 145 (414)
..++.||+..|||++|+.|..+ .++..||.-+|++..++
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466666666666666666652 23334444444444443
No 9
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.53 E-value=0.0026 Score=48.42 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=17.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 132 VKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 132 VrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
+.||+.+||+++|+.+...+....|+..||..+|++.
T Consensus 8 t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~ 44 (63)
T 2bl0_A 8 KVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444334444445555666666554
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.22 E-value=0.0064 Score=45.20 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=33.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRD 169 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~ 169 (414)
..+|.||+.+||+.+|+.+. +...+++.||+.+|++..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~---~~r~aai~IQ~~~Rg~~a 43 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYL---CMQRAAITVQRYVRGYQA 43 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 67899999999999999993 334699999999999874
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.17 E-value=0.0045 Score=68.53 Aligned_cols=42 Identities=31% Similarity=0.292 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhh----hhHHHHHHhhhhHHHHHHH
Q 015032 106 NLAAIKIQSAFRAHLARKALRAL----KGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrq~ 147 (414)
..+|+.||+.+|||++|+.|..+ .+++.||.-+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 45788999999999999999875 6788888888888888765
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.09 E-value=0.0074 Score=45.89 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=36.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
.-++.||+.+||+++|+.+...+....|+..||..+|++.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~ 46 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWL 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988888899999999999886
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.09 E-value=0.0068 Score=46.02 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh----hhHHHHHHhhhhHHHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKALRAL----KGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 107 ~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrq~ 147 (414)
..++.||+..|||++|+.|..+ .++..||.-+|++..++.-
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4689999999999999999985 5777889999999887643
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.68 E-value=0.0099 Score=53.17 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhh
Q 015032 104 DRNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIV 138 (414)
Q Consensus 104 ~ee~AAi~IQtafRGylARral~a-LkglVrLQalv 138 (414)
-...|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 367789999999999999999998 78888887664
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.39 E-value=0.032 Score=63.59 Aligned_cols=42 Identities=26% Similarity=0.173 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhh----hhHHHHHHhhhhHHHHHHH
Q 015032 106 NLAAIKIQSAFRAHLARKALRAL----KGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~aL----kglVrLQalvRG~~vRrq~ 147 (414)
..+++.||+.+|||++|+.|..+ .+++.||..+||++.++.+
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36789999999999999999985 6899999999999998753
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.15 E-value=0.13 Score=46.72 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHh
Q 015032 102 ARDRNLAAIKIQSAFRAHLARKALRA 127 (414)
Q Consensus 102 ~~~ee~AAi~IQtafRGylARral~a 127 (414)
...|+.||+.||.+||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45789999999999999999988775
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=87.18 E-value=0.95 Score=50.17 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=35.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKRD 169 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~~ 169 (414)
+-++.||+.+||+++|+.+...+....|++.||..+|++..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~ 820 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLV 820 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999997766667899999999999873
No 18
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=82.83 E-value=0.69 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhhh
Q 015032 106 NLAAIKIQSAFRAHLARKALRALK 129 (414)
Q Consensus 106 e~AAi~IQtafRGylARral~aLk 129 (414)
..+|+.||+.+|||++|+.|+.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999854
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.13 E-value=2.4 Score=48.25 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=35.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQATATLKCLPSNGEKQSKVQEKR 168 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~~tlr~~qA~v~iQs~iR~r~ 168 (414)
.-++.||+.+||+++|+.+...+....|++.||+.+|++.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~ 832 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFM 832 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999777777889999999999986
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=77.86 E-value=2.5 Score=47.99 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHh-hhhHHHHHHhhhhHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALRA-LKGLVKLQAIVRGRAVRRQA 147 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~a-LkglVrLQalvRG~~vRrq~ 147 (414)
-+.+|+.||. +|||++|+.|+. ..+.+.+|.+-|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567777775 699999999998 46778888777777665543
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=56.79 E-value=15 Score=32.66 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhhHHHHHHHH
Q 015032 129 KGLVKLQAIVRGRAVRRQAT 148 (414)
Q Consensus 129 kglVrLQalvRG~~vRrq~~ 148 (414)
..+|++|+.|||+++|++..
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999884
No 22
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=28.47 E-value=33 Score=22.00 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 015032 108 AAIKIQSAFRAHLARKALR 126 (414)
Q Consensus 108 AAi~IQtafRGylARral~ 126 (414)
|...||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999988754
No 23
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=26.78 E-value=45 Score=23.08 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhhhhHHHHHHHH
Q 015032 105 RNLAAIKIQSAFRAHLARKALR 126 (414)
Q Consensus 105 ee~AAi~IQtafRGylARral~ 126 (414)
+--|...||-.||.|..|+.-.
T Consensus 10 KfYatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999998754
No 24
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=25.35 E-value=27 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.3
Q ss_pred hhHHHHHHHHhhhhHHHH
Q 015032 105 RNLAAIKIQSAFRAHLAR 122 (414)
Q Consensus 105 ee~AAi~IQtafRGylAR 122 (414)
+--|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456899999999998775
No 25
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=21.44 E-value=58 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 015032 107 LAAIKIQSAFRAHLARKA 124 (414)
Q Consensus 107 ~AAi~IQtafRGylARra 124 (414)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998875
Done!