Query 015035
Match_columns 414
No_of_seqs 393 out of 2468
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05971 Methyltransf_10: Prot 100.0 6.7E-82 1.4E-86 620.5 20.6 278 13-346 4-299 (299)
2 KOG2912 Predicted DNA methylas 100.0 2.2E-76 4.8E-81 574.5 27.3 338 14-410 5-361 (419)
3 PRK11727 23S rRNA mA1618 methy 100.0 3.8E-74 8.2E-79 573.0 27.7 285 13-350 13-313 (321)
4 COG3129 Predicted SAM-dependen 100.0 4.2E-54 9.1E-59 404.2 18.4 261 36-350 1-280 (292)
5 COG2890 HemK Methylase of poly 100.0 4.1E-32 8.8E-37 267.1 21.8 194 70-343 76-276 (280)
6 PRK01544 bifunctional N5-gluta 100.0 5.7E-30 1.2E-34 270.2 21.6 204 70-341 79-304 (506)
7 TIGR00536 hemK_fam HemK family 100.0 2.5E-29 5.3E-34 247.1 22.1 197 70-342 78-281 (284)
8 PRK14966 unknown domain/N5-glu 100.0 3.3E-29 7.1E-34 256.9 21.6 194 70-342 218-417 (423)
9 KOG2904 Predicted methyltransf 99.9 5.4E-27 1.2E-31 226.1 17.9 205 70-341 110-325 (328)
10 PRK09328 N5-glutamine S-adenos 99.9 1.5E-25 3.4E-30 216.8 23.0 195 70-342 73-274 (275)
11 TIGR03533 L3_gln_methyl protei 99.9 9.9E-26 2.1E-30 222.1 19.8 178 70-324 85-269 (284)
12 PRK11805 N5-glutamine S-adenos 99.9 4.8E-25 1E-29 219.6 21.9 178 70-324 97-281 (307)
13 PLN02672 methionine S-methyltr 99.9 2.9E-25 6.2E-30 249.0 20.1 185 70-327 82-301 (1082)
14 TIGR03704 PrmC_rel_meth putati 99.9 2.6E-24 5.6E-29 208.5 19.7 186 70-331 50-243 (251)
15 TIGR03534 RF_mod_PrmC protein- 99.9 2.3E-23 4.9E-28 198.4 20.5 191 70-339 53-250 (251)
16 COG4123 Predicted O-methyltran 99.9 6.9E-22 1.5E-26 190.7 13.4 169 116-351 45-213 (248)
17 PF05175 MTS: Methyltransferas 99.8 5.7E-19 1.2E-23 161.1 18.4 161 75-331 2-163 (170)
18 PRK14967 putative methyltransf 99.7 1.1E-16 2.4E-21 151.8 19.8 173 72-323 4-178 (223)
19 TIGR00537 hemK_rel_arch HemK-r 99.7 2.5E-15 5.4E-20 137.6 18.1 138 117-324 21-160 (179)
20 COG2813 RsmC 16S RNA G1207 met 99.6 1.1E-14 2.4E-19 143.8 19.8 162 72-329 126-287 (300)
21 PF13659 Methyltransf_26: Meth 99.6 1.8E-15 3.9E-20 127.8 11.5 114 117-304 2-115 (117)
22 PRK14968 putative methyltransf 99.6 2E-14 4.4E-19 130.6 19.1 146 116-328 24-172 (188)
23 PRK15001 SAM-dependent 23S rib 99.6 1.2E-14 2.7E-19 148.7 18.3 144 73-306 197-342 (378)
24 KOG3191 Predicted N6-DNA-methy 99.6 1.2E-13 2.5E-18 127.3 15.5 143 116-325 44-189 (209)
25 PRK09489 rsmC 16S ribosomal RN 99.5 6.3E-13 1.4E-17 134.6 18.2 117 117-315 198-314 (342)
26 PHA03412 putative methyltransf 99.5 1.6E-13 3.5E-18 132.0 11.3 106 116-299 50-158 (241)
27 COG2263 Predicted RNA methylas 99.4 3E-12 6.5E-17 118.9 15.4 136 88-323 27-162 (198)
28 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.5E-12 3.2E-17 122.6 12.0 93 71-176 19-111 (199)
29 PHA03411 putative methyltransf 99.4 1.5E-12 3.2E-17 127.9 11.7 135 116-322 65-207 (279)
30 TIGR01177 conserved hypothetic 99.4 1.6E-11 3.5E-16 123.3 18.6 143 116-339 183-326 (329)
31 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3.2E-12 7E-17 140.5 14.7 145 116-333 539-684 (702)
32 COG2264 PrmA Ribosomal protein 99.4 7.1E-12 1.5E-16 124.3 15.4 142 89-330 147-289 (300)
33 PRK15128 23S rRNA m(5)C1962 me 99.4 5.1E-12 1.1E-16 130.4 14.6 134 116-320 221-356 (396)
34 PF12847 Methyltransf_18: Meth 99.3 2.3E-11 4.9E-16 101.7 13.8 59 117-176 3-61 (112)
35 PRK08287 cobalt-precorrin-6Y C 99.3 3.9E-11 8.5E-16 110.6 16.7 127 116-331 32-158 (187)
36 PRK00107 gidB 16S rRNA methylt 99.3 2.5E-11 5.5E-16 113.2 15.2 122 116-327 46-167 (187)
37 TIGR00138 gidB 16S rRNA methyl 99.3 3.3E-11 7.2E-16 111.6 13.9 125 116-330 43-170 (181)
38 PF06325 PrmA: Ribosomal prote 99.3 2E-11 4.4E-16 121.3 13.2 137 89-329 146-283 (295)
39 PRK00517 prmA ribosomal protei 99.3 7E-11 1.5E-15 114.3 15.9 119 116-329 120-238 (250)
40 PRK13168 rumA 23S rRNA m(5)U19 99.3 6.3E-11 1.4E-15 123.7 16.0 93 71-176 261-354 (443)
41 PRK00377 cbiT cobalt-precorrin 99.3 8.1E-11 1.8E-15 109.8 13.9 137 116-338 41-178 (198)
42 TIGR00406 prmA ribosomal prote 99.3 1.6E-10 3.4E-15 114.3 16.3 123 116-329 160-283 (288)
43 PF01170 UPF0020: Putative RNA 99.2 9.7E-11 2.1E-15 108.3 13.2 128 116-323 29-165 (179)
44 TIGR00091 tRNA (guanine-N(7)-) 99.2 6.1E-11 1.3E-15 110.5 11.5 135 116-325 17-154 (194)
45 PRK00121 trmB tRNA (guanine-N( 99.2 1E-10 2.2E-15 109.8 12.6 131 116-322 41-174 (202)
46 PRK03522 rumB 23S rRNA methylu 99.2 9.5E-11 2.1E-15 117.2 11.3 90 74-176 140-230 (315)
47 PLN02336 phosphoethanolamine N 99.2 3.7E-10 8.1E-15 118.4 16.1 86 69-176 238-323 (475)
48 PF13847 Methyltransf_31: Meth 99.2 3E-10 6.6E-15 101.0 12.9 61 115-177 3-64 (152)
49 PRK14902 16S rRNA methyltransf 99.2 3.9E-10 8.4E-15 117.8 15.1 149 116-325 251-404 (444)
50 TIGR02752 MenG_heptapren 2-hep 99.2 1.5E-09 3.3E-14 102.6 17.5 59 116-176 46-105 (231)
51 TIGR02085 meth_trns_rumB 23S r 99.1 3E-10 6.6E-15 116.3 11.0 90 74-176 200-290 (374)
52 PRK10901 16S rRNA methyltransf 99.1 9.5E-10 2.1E-14 114.4 14.8 145 115-321 244-392 (427)
53 TIGR00095 RNA methyltransferas 99.1 6.6E-10 1.4E-14 103.7 9.7 59 116-176 50-108 (189)
54 smart00650 rADc Ribosomal RNA 99.0 9.2E-10 2E-14 100.1 9.7 56 116-177 14-69 (169)
55 PLN02490 MPBQ/MSBQ methyltrans 99.0 1.2E-08 2.6E-13 103.5 18.7 148 116-351 114-281 (340)
56 PRK11036 putative S-adenosyl-L 99.0 2.5E-09 5.5E-14 103.4 12.9 58 116-176 45-102 (255)
57 TIGR02469 CbiT precorrin-6Y C5 99.0 8.5E-09 1.8E-13 87.0 14.3 57 117-175 21-77 (124)
58 PLN02244 tocopherol O-methyltr 99.0 1.6E-08 3.4E-13 102.4 18.5 60 115-176 118-177 (340)
59 PLN02396 hexaprenyldihydroxybe 99.0 1.1E-08 2.4E-13 103.1 17.0 96 76-176 90-189 (322)
60 TIGR00479 rumA 23S rRNA (uraci 99.0 5.5E-09 1.2E-13 108.6 14.7 90 74-176 259-349 (431)
61 TIGR00563 rsmB ribosomal RNA s 99.0 7.5E-09 1.6E-13 107.7 15.0 147 116-321 239-388 (426)
62 PRK14896 ksgA 16S ribosomal RN 99.0 2.9E-09 6.2E-14 103.7 10.8 56 116-177 30-85 (258)
63 PRK11873 arsM arsenite S-adeno 99.0 2.6E-08 5.7E-13 96.9 17.4 60 115-176 77-137 (272)
64 PLN02233 ubiquinone biosynthes 99.0 5.7E-08 1.2E-12 94.8 19.7 60 116-176 74-136 (261)
65 TIGR00446 nop2p NOL1/NOP2/sun 99.0 7.6E-09 1.6E-13 101.1 13.3 143 116-321 72-219 (264)
66 TIGR00477 tehB tellurite resis 99.0 9.9E-09 2.2E-13 95.8 13.4 55 116-175 31-85 (195)
67 PRK15451 tRNA cmo(5)U34 methyl 99.0 8.5E-09 1.8E-13 99.6 13.1 60 116-176 57-118 (247)
68 PRK04457 spermidine synthase; 99.0 2.5E-08 5.4E-13 97.6 16.5 83 85-176 42-126 (262)
69 PRK07402 precorrin-6B methylas 98.9 3.2E-08 6.9E-13 92.0 16.1 59 116-176 41-99 (196)
70 PTZ00338 dimethyladenosine tra 98.9 3.7E-09 7.9E-14 105.3 10.4 58 116-176 37-94 (294)
71 PRK00274 ksgA 16S ribosomal RN 98.9 3.3E-09 7.3E-14 104.1 9.9 55 116-177 43-97 (272)
72 PRK13944 protein-L-isoaspartat 98.9 5.9E-08 1.3E-12 91.3 17.7 60 116-176 73-133 (205)
73 PRK14103 trans-aconitate 2-met 98.9 2.2E-08 4.8E-13 96.7 14.8 53 115-176 29-81 (255)
74 PRK11188 rrmJ 23S rRNA methylt 98.9 2.7E-08 5.7E-13 94.2 14.9 151 116-344 52-207 (209)
75 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.4E-08 3.1E-13 111.9 14.5 61 116-177 191-293 (702)
76 PF01209 Ubie_methyltran: ubiE 98.9 1E-08 2.2E-13 98.9 11.4 60 115-176 47-107 (233)
77 PRK14903 16S rRNA methyltransf 98.9 1.4E-08 3E-13 106.1 13.1 144 116-321 238-386 (431)
78 COG2227 UbiG 2-polyprenyl-3-me 98.9 2.9E-09 6.4E-14 102.4 7.3 77 76-163 26-105 (243)
79 TIGR00740 methyltransferase, p 98.9 5.9E-08 1.3E-12 92.8 16.3 61 116-177 54-116 (239)
80 PRK14901 16S rRNA methyltransf 98.9 3E-08 6.5E-13 103.5 14.4 147 116-321 253-404 (434)
81 smart00828 PKS_MT Methyltransf 98.9 4.4E-08 9.4E-13 92.3 14.2 58 118-176 2-59 (224)
82 PRK12335 tellurite resistance 98.9 8.2E-08 1.8E-12 94.8 16.4 56 116-176 121-176 (287)
83 PF03602 Cons_hypoth95: Conser 98.9 1E-08 2.3E-13 95.3 9.2 92 73-176 9-101 (183)
84 PRK11207 tellurite resistance 98.8 3.6E-08 7.8E-13 92.2 12.6 57 116-176 31-87 (197)
85 PRK14121 tRNA (guanine-N(7)-)- 98.8 8.2E-08 1.8E-12 98.9 16.2 59 116-176 123-181 (390)
86 PRK14904 16S rRNA methyltransf 98.8 3.6E-08 7.8E-13 103.2 13.7 143 116-321 251-397 (445)
87 TIGR00438 rrmJ cell division p 98.8 8.7E-08 1.9E-12 88.5 14.5 150 115-343 32-187 (188)
88 PTZ00098 phosphoethanolamine N 98.8 1.9E-07 4.2E-12 91.2 17.6 57 115-176 52-108 (263)
89 PRK05031 tRNA (uracil-5-)-meth 98.8 1.3E-08 2.8E-13 104.0 9.6 56 117-176 208-263 (362)
90 PRK00216 ubiE ubiquinone/menaq 98.8 2.1E-07 4.6E-12 87.4 17.0 60 116-176 52-112 (239)
91 KOG3420 Predicted RNA methylas 98.8 5.2E-09 1.1E-13 93.8 5.3 58 115-177 48-106 (185)
92 TIGR00080 pimt protein-L-isoas 98.8 4.2E-08 9E-13 92.7 11.8 60 115-176 77-137 (215)
93 PLN02585 magnesium protoporphy 98.8 3.1E-08 6.7E-13 99.6 11.2 81 73-162 109-189 (315)
94 PLN02781 Probable caffeoyl-CoA 98.8 1.3E-08 2.9E-13 97.9 8.0 61 116-177 69-130 (234)
95 PRK06922 hypothetical protein; 98.8 7.6E-08 1.7E-12 104.3 14.1 120 116-305 419-538 (677)
96 cd02440 AdoMet_MTases S-adenos 98.8 1.7E-07 3.7E-12 74.0 12.1 56 118-176 1-56 (107)
97 PF13649 Methyltransf_25: Meth 98.8 2.2E-08 4.8E-13 83.0 7.1 56 119-177 1-59 (101)
98 TIGR02987 met_A_Alw26 type II 98.7 5E-08 1.1E-12 104.0 11.3 59 115-175 31-97 (524)
99 TIGR02143 trmA_only tRNA (urac 98.7 3.7E-08 7.9E-13 100.4 9.7 56 117-176 199-254 (353)
100 TIGR03587 Pse_Me-ase pseudamin 98.7 6.6E-08 1.4E-12 91.3 10.7 44 116-159 44-87 (204)
101 COG2242 CobL Precorrin-6B meth 98.7 4E-07 8.8E-12 84.8 15.3 60 115-176 34-93 (187)
102 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.4E-07 3E-12 93.6 12.9 61 115-176 46-114 (311)
103 COG0116 Predicted N6-adenine-s 98.7 1.5E-07 3.3E-12 96.2 13.2 60 117-177 193-291 (381)
104 PRK00811 spermidine synthase; 98.7 9.5E-07 2E-11 87.4 18.4 62 115-176 76-140 (283)
105 TIGR02716 C20_methyl_CrtF C-20 98.7 4.2E-07 9.1E-12 90.2 15.8 60 116-177 150-209 (306)
106 PRK08317 hypothetical protein; 98.7 8.3E-07 1.8E-11 82.9 17.0 59 115-176 19-78 (241)
107 PF09445 Methyltransf_15: RNA 98.7 3.7E-07 8E-12 83.7 13.9 148 118-334 2-152 (163)
108 PRK01683 trans-aconitate 2-met 98.7 1.2E-07 2.5E-12 91.5 11.1 55 115-176 31-85 (258)
109 PRK10258 biotin biosynthesis p 98.7 3.7E-07 8E-12 87.7 14.3 42 116-159 43-84 (251)
110 PRK03612 spermidine synthase; 98.7 9.8E-08 2.1E-12 102.0 10.9 135 115-327 297-441 (521)
111 COG1092 Predicted SAM-dependen 98.7 1E-07 2.2E-12 98.3 10.6 132 116-319 218-352 (393)
112 COG2226 UbiE Methylase involve 98.6 9.4E-08 2E-12 92.6 8.9 60 115-176 51-110 (238)
113 TIGR02021 BchM-ChlM magnesium 98.6 2.2E-07 4.8E-12 87.6 10.0 58 116-176 56-113 (219)
114 PRK07580 Mg-protoporphyrin IX 98.6 1.3E-06 2.8E-11 82.3 15.1 57 116-175 64-120 (230)
115 PRK04266 fibrillarin; Provisio 98.6 1.6E-06 3.6E-11 83.2 16.0 57 116-176 73-129 (226)
116 PF10672 Methyltrans_SAM: S-ad 98.6 3.7E-07 8.1E-12 90.7 11.5 131 116-322 124-257 (286)
117 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.8E-06 8.3E-11 78.0 17.6 58 115-176 39-97 (223)
118 PF08241 Methyltransf_11: Meth 98.6 2.4E-07 5.1E-12 74.0 8.2 51 120-176 1-51 (95)
119 TIGR00755 ksgA dimethyladenosi 98.6 1.9E-07 4.1E-12 90.5 9.0 56 116-177 30-85 (253)
120 TIGR02072 BioC biotin biosynth 98.6 8.5E-07 1.8E-11 83.0 12.8 55 116-176 35-89 (240)
121 PRK06202 hypothetical protein; 98.6 1.7E-07 3.6E-12 89.3 7.9 48 115-162 60-111 (232)
122 COG2230 Cfa Cyclopropane fatty 98.6 3.4E-07 7.4E-12 90.6 10.2 61 115-177 72-132 (283)
123 PRK13942 protein-L-isoaspartat 98.6 6.6E-07 1.4E-11 84.7 11.8 59 116-176 77-136 (212)
124 PRK00312 pcm protein-L-isoaspa 98.6 6.7E-07 1.5E-11 84.0 11.8 58 115-176 78-135 (212)
125 PRK05134 bifunctional 3-demeth 98.6 2.4E-06 5.3E-11 81.0 15.6 55 116-175 49-103 (233)
126 COG2265 TrmA SAM-dependent met 98.6 2.3E-07 4.9E-12 97.1 9.3 90 74-176 260-350 (432)
127 KOG1271 Methyltransferases [Ge 98.5 3.1E-07 6.8E-12 85.3 8.8 78 94-177 51-128 (227)
128 PRK04338 N(2),N(2)-dimethylgua 98.5 1.7E-07 3.7E-12 96.6 7.8 58 117-176 59-116 (382)
129 PRK11705 cyclopropane fatty ac 98.5 1E-06 2.2E-11 90.9 13.5 54 116-175 168-221 (383)
130 COG2519 GCD14 tRNA(1-methylade 98.5 1.3E-06 2.9E-11 84.8 13.1 128 115-331 94-222 (256)
131 PRK15068 tRNA mo(5)U34 methylt 98.5 3.1E-06 6.7E-11 85.3 15.3 59 116-176 123-181 (322)
132 PF08704 GCD14: tRNA methyltra 98.5 8.3E-06 1.8E-10 79.5 16.8 132 115-331 40-173 (247)
133 PF05958 tRNA_U5-meth_tr: tRNA 98.5 3.8E-07 8.2E-12 93.0 7.8 86 74-175 164-252 (352)
134 PLN03075 nicotianamine synthas 98.4 6.5E-07 1.4E-11 89.3 9.0 63 115-177 123-187 (296)
135 PRK13943 protein-L-isoaspartat 98.4 1.2E-06 2.6E-11 88.4 10.5 59 116-176 81-140 (322)
136 PF02475 Met_10: Met-10+ like- 98.4 8.9E-07 1.9E-11 83.7 8.8 130 30-176 27-161 (200)
137 PF02353 CMAS: Mycolic acid cy 98.4 6.4E-07 1.4E-11 88.4 8.2 61 115-177 62-122 (273)
138 KOG1270 Methyltransferases [Co 98.4 2.5E-07 5.5E-12 90.1 5.1 89 76-169 48-141 (282)
139 KOG2187 tRNA uracil-5-methyltr 98.4 5.2E-07 1.1E-11 94.7 7.6 93 70-175 346-439 (534)
140 PF03848 TehB: Tellurite resis 98.4 1.6E-06 3.5E-11 81.5 10.1 57 115-176 30-86 (192)
141 PRK11088 rrmA 23S rRNA methylt 98.4 2.7E-06 5.8E-11 83.3 11.7 54 116-176 86-142 (272)
142 PRK01581 speE spermidine synth 98.4 9.5E-06 2.1E-10 83.1 15.8 62 115-176 150-216 (374)
143 TIGR00452 methyltransferase, p 98.4 8.5E-06 1.8E-10 82.1 14.9 59 115-175 121-179 (314)
144 TIGR01983 UbiG ubiquinone bios 98.4 1.7E-05 3.8E-10 74.4 16.1 72 95-175 30-101 (224)
145 PF01596 Methyltransf_3: O-met 98.3 8.3E-07 1.8E-11 84.2 6.6 60 116-176 46-106 (205)
146 TIGR02081 metW methionine bios 98.3 3.9E-06 8.4E-11 77.9 10.7 40 117-157 15-54 (194)
147 TIGR00417 speE spermidine synt 98.3 1.2E-05 2.6E-10 78.8 14.2 60 116-175 73-134 (270)
148 PLN02476 O-methyltransferase 98.3 2E-06 4.4E-11 85.1 7.9 60 116-176 119-179 (278)
149 PRK05785 hypothetical protein; 98.3 2.7E-06 5.9E-11 81.4 8.5 42 116-158 52-93 (226)
150 COG4122 Predicted O-methyltran 98.3 3.3E-06 7.2E-11 80.9 8.8 73 89-174 45-118 (219)
151 smart00138 MeTrc Methyltransfe 98.3 1.1E-06 2.3E-11 86.2 5.2 45 115-159 99-152 (264)
152 PF08242 Methyltransf_12: Meth 98.2 1.1E-07 2.3E-12 78.3 -1.7 44 120-163 1-44 (99)
153 TIGR03438 probable methyltrans 98.2 3.3E-05 7.2E-10 77.0 15.3 61 116-177 64-125 (301)
154 PLN02366 spermidine synthase 98.2 8.7E-05 1.9E-09 74.6 18.3 97 72-176 56-154 (308)
155 PF01135 PCMT: Protein-L-isoas 98.2 1.4E-05 3.1E-10 76.0 11.8 88 74-176 44-132 (209)
156 COG1041 Predicted DNA modifica 98.2 2.5E-05 5.4E-10 79.2 14.1 143 115-339 197-341 (347)
157 PLN02336 phosphoethanolamine N 98.2 1.4E-05 3.1E-10 84.0 12.5 55 116-176 38-92 (475)
158 COG0742 N6-adenine-specific me 98.2 5.2E-06 1.1E-10 77.6 8.2 60 115-176 43-102 (187)
159 COG2518 Pcm Protein-L-isoaspar 98.2 1.6E-05 3.4E-10 75.7 10.8 59 115-177 72-130 (209)
160 KOG1499 Protein arginine N-met 98.1 7.7E-06 1.7E-10 82.7 8.5 59 115-176 60-118 (346)
161 PF10294 Methyltransf_16: Puta 98.1 4.8E-06 1E-10 76.6 6.3 61 115-176 45-106 (173)
162 COG4106 Tam Trans-aconitate me 98.1 4.6E-06 9.9E-11 79.6 6.0 56 115-177 30-85 (257)
163 COG2521 Predicted archaeal met 98.1 8.4E-06 1.8E-10 78.6 7.8 140 115-333 134-281 (287)
164 PF05401 NodS: Nodulation prot 98.1 1E-05 2.2E-10 76.2 7.8 56 116-177 44-99 (201)
165 KOG1540 Ubiquinone biosynthesi 98.1 9.6E-05 2.1E-09 72.2 14.3 62 114-176 99-168 (296)
166 PLN02589 caffeoyl-CoA O-methyl 98.0 2.2E-05 4.8E-10 76.5 9.2 60 116-176 80-140 (247)
167 PF04816 DUF633: Family of unk 98.0 5.7E-05 1.2E-09 71.8 11.7 57 119-176 1-57 (205)
168 TIGR00308 TRM1 tRNA(guanine-26 98.0 1.1E-05 2.4E-10 83.0 7.3 59 116-176 45-104 (374)
169 PF07021 MetW: Methionine bios 98.0 1.5E-05 3.2E-10 74.8 7.2 52 116-177 14-65 (193)
170 PF05185 PRMT5: PRMT5 arginine 97.9 3.1E-05 6.8E-10 81.5 9.0 61 116-177 187-251 (448)
171 TIGR01444 fkbM_fam methyltrans 97.9 3.4E-05 7.3E-10 67.4 7.5 58 118-177 1-58 (143)
172 PRK13255 thiopurine S-methyltr 97.9 6.1E-05 1.3E-09 72.0 9.5 39 116-156 38-76 (218)
173 KOG2899 Predicted methyltransf 97.9 3.5E-05 7.6E-10 74.7 7.8 48 115-162 58-105 (288)
174 PTZ00146 fibrillarin; Provisio 97.9 0.0011 2.3E-08 66.4 17.9 57 116-176 133-190 (293)
175 PF13489 Methyltransf_23: Meth 97.9 6.8E-05 1.5E-09 65.8 8.5 38 115-154 22-59 (161)
176 COG0030 KsgA Dimethyladenosine 97.8 7.8E-05 1.7E-09 73.2 9.3 56 116-177 31-86 (259)
177 COG0286 HsdM Type I restrictio 97.8 0.00015 3.2E-09 77.3 12.0 58 117-175 188-249 (489)
178 PF02527 GidB: rRNA small subu 97.8 0.00081 1.8E-08 62.9 15.2 127 118-333 51-179 (184)
179 KOG1500 Protein arginine N-met 97.8 5.9E-05 1.3E-09 76.1 8.0 59 115-176 177-235 (517)
180 PLN02823 spermine synthase 97.8 0.00065 1.4E-08 69.2 15.0 63 115-177 103-167 (336)
181 KOG0820 Ribosomal RNA adenine 97.7 0.00016 3.4E-09 71.2 9.7 60 115-177 58-117 (315)
182 KOG3010 Methyltransferase [Gen 97.7 4.5E-05 9.7E-10 73.8 5.5 54 95-158 21-74 (261)
183 PRK04148 hypothetical protein; 97.7 0.0001 2.2E-09 65.6 7.2 52 115-177 16-68 (134)
184 TIGR03840 TMPT_Se_Te thiopurin 97.7 9.5E-05 2.1E-09 70.4 7.3 60 116-177 35-104 (213)
185 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00019 4E-09 70.2 9.3 70 93-177 17-86 (262)
186 PF02390 Methyltransf_4: Putat 97.7 0.00021 4.6E-09 67.2 8.8 58 118-177 20-77 (195)
187 KOG1541 Predicted protein carb 97.6 0.00017 3.7E-09 69.2 7.7 41 115-157 50-90 (270)
188 PRK00050 16S rRNA m(4)C1402 me 97.6 0.0002 4.4E-09 71.6 8.3 58 116-177 20-78 (296)
189 COG2384 Predicted SAM-dependen 97.6 0.0019 4E-08 62.0 14.3 130 117-334 18-147 (226)
190 COG2520 Predicted methyltransf 97.4 0.00053 1.2E-08 69.8 8.7 60 116-177 189-248 (341)
191 PF03291 Pox_MCEL: mRNA cappin 97.4 0.0018 3.9E-08 65.9 11.9 155 115-347 62-235 (331)
192 PRK11933 yebU rRNA (cytosine-C 97.4 0.0016 3.4E-08 69.2 11.9 145 115-321 113-262 (470)
193 COG4076 Predicted RNA methylas 97.2 0.00036 7.8E-09 65.6 4.6 58 117-178 34-91 (252)
194 KOG4300 Predicted methyltransf 97.2 0.0033 7.1E-08 60.1 10.5 59 115-176 76-135 (252)
195 PF13679 Methyltransf_32: Meth 97.2 0.0013 2.8E-08 58.3 7.5 61 115-175 25-90 (141)
196 PRK13256 thiopurine S-methyltr 97.2 0.002 4.4E-08 62.2 9.0 40 116-157 44-83 (226)
197 PRK10742 putative methyltransf 97.1 0.0017 3.7E-08 63.5 7.8 58 117-176 90-154 (250)
198 COG3897 Predicted methyltransf 97.1 0.003 6.5E-08 59.7 9.1 57 115-175 79-135 (218)
199 KOG2730 Methylase [General fun 97.0 0.00035 7.6E-09 67.0 2.6 59 116-177 95-153 (263)
200 COG0220 Predicted S-adenosylme 97.0 0.0018 3.9E-08 62.6 7.4 58 117-176 50-107 (227)
201 COG0144 Sun tRNA and rRNA cyto 97.0 0.017 3.6E-07 59.3 14.8 148 115-321 156-308 (355)
202 PRK10611 chemotaxis methyltran 97.0 0.0015 3.3E-08 65.1 6.8 44 116-159 116-167 (287)
203 PF01564 Spermine_synth: Sperm 97.0 0.013 2.8E-07 57.0 12.7 62 115-176 76-139 (246)
204 KOG1663 O-methyltransferase [S 96.9 0.0026 5.7E-08 61.3 7.4 101 57-177 34-135 (237)
205 PF11599 AviRa: RRNA methyltra 96.9 0.0016 3.4E-08 62.4 5.4 70 86-162 29-100 (246)
206 PF05724 TPMT: Thiopurine S-me 96.7 0.0042 9.1E-08 59.5 6.9 60 116-177 38-107 (218)
207 PF01861 DUF43: Protein of unk 96.6 0.037 8E-07 53.9 13.0 60 115-178 44-103 (243)
208 PF07091 FmrO: Ribosomal RNA m 96.6 0.0069 1.5E-07 59.2 7.8 117 24-177 47-164 (251)
209 PF08003 Methyltransf_9: Prote 96.6 0.0075 1.6E-07 60.6 8.0 42 115-157 115-156 (315)
210 PF00891 Methyltransf_2: O-met 96.5 0.0063 1.4E-07 58.2 6.8 54 116-178 101-154 (241)
211 PF06962 rRNA_methylase: Putat 96.5 0.036 7.9E-07 49.8 11.0 110 141-322 1-115 (140)
212 COG0357 GidB Predicted S-adeno 96.4 0.012 2.5E-07 56.6 8.0 77 92-175 48-125 (215)
213 COG4976 Predicted methyltransf 96.4 0.0017 3.7E-08 62.8 2.3 41 116-158 126-166 (287)
214 KOG1501 Arginine N-methyltrans 96.4 0.0061 1.3E-07 63.7 6.0 60 114-175 65-124 (636)
215 TIGR00478 tly hemolysin TlyA f 96.2 0.0071 1.5E-07 58.4 5.5 39 115-154 75-113 (228)
216 KOG2915 tRNA(1-methyladenosine 96.2 0.14 3.1E-06 50.8 14.3 62 116-178 106-168 (314)
217 COG0421 SpeE Spermidine syntha 96.1 0.081 1.7E-06 52.8 12.3 61 116-176 77-139 (282)
218 PRK01544 bifunctional N5-gluta 96.0 0.018 3.8E-07 61.8 7.8 59 115-175 347-405 (506)
219 KOG2671 Putative RNA methylase 95.9 0.0058 1.3E-07 62.2 3.2 46 116-163 209-261 (421)
220 PF12147 Methyltransf_20: Puta 95.9 0.06 1.3E-06 53.9 10.0 64 114-178 134-199 (311)
221 KOG2361 Predicted methyltransf 95.7 0.0095 2.1E-07 58.0 3.5 57 117-176 73-131 (264)
222 KOG1975 mRNA cap methyltransfe 95.7 0.075 1.6E-06 54.0 9.9 173 93-347 101-286 (389)
223 TIGR00006 S-adenosyl-methyltra 95.6 0.052 1.1E-06 54.8 8.6 59 116-177 21-79 (305)
224 PLN02232 ubiquinone biosynthes 95.5 0.28 6.1E-06 44.2 12.5 34 143-176 1-35 (160)
225 PF06080 DUF938: Protein of un 95.2 0.13 2.9E-06 49.0 9.5 46 118-163 28-73 (204)
226 cd00315 Cyt_C5_DNA_methylase C 95.0 0.48 1E-05 46.7 13.3 40 118-159 2-42 (275)
227 PF08123 DOT1: Histone methyla 94.8 0.12 2.5E-06 49.2 8.0 61 116-176 43-110 (205)
228 PF07669 Eco57I: Eco57I restri 94.8 0.041 9E-07 46.6 4.4 66 241-320 2-72 (106)
229 TIGR00497 hsdM type I restrict 94.7 0.076 1.6E-06 56.8 7.0 47 117-163 219-269 (501)
230 KOG4058 Uncharacterized conser 94.7 0.051 1.1E-06 49.6 4.8 84 83-177 49-132 (199)
231 PF01739 CheR: CheR methyltran 94.5 0.041 8.9E-07 52.0 4.1 44 115-158 31-83 (196)
232 KOG3115 Methyltransferase-like 94.4 0.055 1.2E-06 51.7 4.6 48 115-162 60-107 (249)
233 PF05219 DREV: DREV methyltran 94.4 0.13 2.9E-06 50.7 7.3 85 60-153 43-130 (265)
234 PF05148 Methyltransf_8: Hypot 94.3 0.52 1.1E-05 45.3 10.9 67 238-333 119-187 (219)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.15 3.2E-06 50.7 7.1 146 115-321 85-239 (283)
236 PF02005 TRM: N2,N2-dimethylgu 93.9 0.15 3.3E-06 52.9 7.1 60 116-176 50-111 (377)
237 KOG1661 Protein-L-isoaspartate 93.8 0.14 3E-06 49.2 6.0 47 116-162 83-131 (237)
238 PF03059 NAS: Nicotianamine sy 93.6 0.29 6.4E-06 48.7 8.3 85 88-176 96-183 (276)
239 COG1352 CheR Methylase of chem 93.5 0.11 2.4E-06 51.5 4.9 43 115-157 96-147 (268)
240 PRK11524 putative methyltransf 93.4 0.3 6.4E-06 48.4 8.0 72 239-322 25-96 (284)
241 COG0293 FtsJ 23S rRNA methylas 93.4 2 4.3E-05 41.1 13.1 154 116-346 46-203 (205)
242 PF09243 Rsm22: Mitochondrial 93.3 0.19 4.1E-06 49.7 6.3 48 115-162 33-81 (274)
243 KOG2078 tRNA modification enzy 93.0 0.1 2.2E-06 54.6 4.0 59 116-177 250-309 (495)
244 PF01555 N6_N4_Mtase: DNA meth 92.6 0.24 5.3E-06 45.6 5.7 41 115-157 191-231 (231)
245 COG0500 SmtA SAM-dependent met 92.3 0.58 1.3E-05 37.3 6.9 55 119-176 52-107 (257)
246 TIGR03439 methyl_EasF probable 92.0 0.36 7.8E-06 49.0 6.5 60 116-176 77-141 (319)
247 PRK13699 putative methylase; P 91.4 1.4 3E-05 42.5 9.5 75 238-324 17-91 (227)
248 COG1867 TRM1 N2,N2-dimethylgua 91.1 0.44 9.5E-06 49.2 6.0 58 116-175 53-110 (380)
249 PRK11760 putative 23S rRNA C24 91.1 0.58 1.3E-05 48.1 6.8 51 115-176 211-261 (357)
250 PRK11524 putative methyltransf 91.0 0.65 1.4E-05 45.9 7.0 46 115-162 208-253 (284)
251 PF01795 Methyltransf_5: MraW 90.4 0.53 1.1E-05 47.7 5.8 59 115-176 20-78 (310)
252 PHA01634 hypothetical protein 89.9 0.69 1.5E-05 41.4 5.4 48 115-163 28-75 (156)
253 KOG3045 Predicted RNA methylas 89.9 4.1 8.8E-05 40.7 11.2 42 283-324 243-286 (325)
254 PF13578 Methyltransf_24: Meth 89.7 0.2 4.3E-06 41.5 1.9 55 120-176 1-58 (106)
255 COG3963 Phospholipid N-methylt 89.5 1.1 2.4E-05 41.8 6.6 76 82-176 27-103 (194)
256 PF01728 FtsJ: FtsJ-like methy 88.4 0.29 6.3E-06 44.6 2.1 36 115-150 23-59 (181)
257 PF04672 Methyltransf_19: S-ad 87.6 1.1 2.4E-05 44.5 5.7 59 117-178 70-132 (267)
258 COG0275 Predicted S-adenosylme 86.5 3.8 8.1E-05 41.5 8.8 58 116-176 24-82 (314)
259 PF07757 AdoMet_MTase: Predict 86.1 0.69 1.5E-05 40.0 2.9 32 115-148 58-89 (112)
260 PRK13699 putative methylase; P 86.0 2.9 6.2E-05 40.3 7.6 46 115-162 163-208 (227)
261 KOG1253 tRNA methyltransferase 84.0 0.48 1E-05 50.5 1.3 61 114-175 108-169 (525)
262 COG4262 Predicted spermidine s 84.0 2.7 5.9E-05 43.7 6.6 61 115-176 289-355 (508)
263 PF04989 CmcI: Cephalosporin h 83.8 0.95 2.1E-05 43.3 3.1 60 115-177 32-95 (206)
264 KOG2793 Putative N2,N2-dimethy 83.6 4.7 0.0001 39.6 7.9 36 115-151 86-121 (248)
265 PF05891 Methyltransf_PK: AdoM 82.2 3.2 7E-05 40.1 6.0 46 115-161 55-100 (218)
266 KOG3201 Uncharacterized conser 81.7 0.59 1.3E-05 43.4 0.8 47 116-162 30-77 (201)
267 PF00145 DNA_methylase: C-5 cy 81.6 2.4 5.2E-05 41.4 5.1 41 118-160 2-43 (335)
268 PF05050 Methyltransf_21: Meth 81.1 3.6 7.9E-05 35.8 5.6 54 121-175 1-60 (167)
269 COG1063 Tdh Threonine dehydrog 80.2 5.2 0.00011 40.7 7.1 40 118-157 171-211 (350)
270 PRK00536 speE spermidine synth 78.6 4 8.6E-05 40.4 5.5 77 71-158 37-113 (262)
271 COG1568 Predicted methyltransf 75.9 5.7 0.00012 40.0 5.6 60 116-178 153-212 (354)
272 PF02636 Methyltransf_28: Puta 75.7 3.6 7.7E-05 39.8 4.2 56 116-171 19-86 (252)
273 KOG1227 Putative methyltransfe 75.0 1 2.2E-05 45.6 0.2 63 117-181 196-259 (351)
274 PF03141 Methyltransf_29: Puta 74.0 3.1 6.7E-05 44.7 3.5 72 76-156 84-159 (506)
275 PF04445 SAM_MT: Putative SAM- 73.9 11 0.00024 36.8 7.0 59 117-177 77-142 (234)
276 PRK10458 DNA cytosine methylas 71.1 15 0.00033 39.3 7.9 63 92-159 67-130 (467)
277 PRK12826 3-ketoacyl-(acyl-carr 69.5 10 0.00022 35.2 5.6 57 117-177 7-65 (251)
278 PRK07523 gluconate 5-dehydroge 68.9 13 0.00028 35.0 6.3 58 116-177 10-69 (255)
279 KOG3987 Uncharacterized conser 68.3 2 4.4E-05 41.5 0.6 85 61-156 64-151 (288)
280 PRK01747 mnmC bifunctional tRN 68.2 23 0.0005 39.1 8.9 53 280-342 186-238 (662)
281 PRK07576 short chain dehydroge 68.2 11 0.00025 35.9 5.8 57 117-177 10-68 (264)
282 KOG2940 Predicted methyltransf 67.5 5.3 0.00012 39.3 3.3 41 117-158 74-114 (325)
283 PRK05867 short chain dehydroge 66.7 12 0.00026 35.3 5.6 58 116-177 9-68 (253)
284 KOG2651 rRNA adenine N-6-methy 66.2 11 0.00023 39.6 5.3 41 117-158 155-195 (476)
285 KOG2352 Predicted spermine/spe 66.2 2.9 6.3E-05 44.7 1.3 49 114-162 294-342 (482)
286 PRK05854 short chain dehydroge 65.1 17 0.00037 36.0 6.6 59 117-177 15-75 (313)
287 COG0270 Dcm Site-specific DNA 62.8 12 0.00026 37.8 5.0 43 116-160 3-46 (328)
288 PF01234 NNMT_PNMT_TEMT: NNMT/ 61.9 4.2 9.1E-05 40.1 1.5 43 116-159 57-99 (256)
289 TIGR00675 dcm DNA-methyltransf 61.5 11 0.00024 37.9 4.5 39 119-159 1-40 (315)
290 PF01555 N6_N4_Mtase: DNA meth 61.0 13 0.00029 33.9 4.6 75 242-323 1-77 (231)
291 PTZ00357 methyltransferase; Pr 59.6 29 0.00063 39.2 7.3 62 117-178 702-774 (1072)
292 PRK08340 glucose-1-dehydrogena 59.4 18 0.00038 34.3 5.2 55 118-177 2-58 (259)
293 PF07942 N2227: N2227-like pro 58.9 36 0.00078 33.9 7.4 67 90-159 32-98 (270)
294 KOG3178 Hydroxyindole-O-methyl 58.7 16 0.00034 37.7 5.0 58 117-182 179-236 (342)
295 PRK08862 short chain dehydroge 58.3 20 0.00043 33.8 5.4 57 117-177 6-64 (227)
296 PRK05599 hypothetical protein; 58.3 23 0.0005 33.5 5.9 57 118-177 2-59 (246)
297 COG1064 AdhP Zn-dependent alco 57.7 12 0.00027 38.4 4.0 79 76-158 125-209 (339)
298 PRK07035 short chain dehydroge 57.6 27 0.00059 32.7 6.2 57 117-177 9-67 (252)
299 PF11899 DUF3419: Protein of u 57.5 20 0.00043 37.4 5.6 43 116-160 36-78 (380)
300 KOG1201 Hydroxysteroid 17-beta 57.3 18 0.00038 36.6 5.0 58 115-177 37-96 (300)
301 COG1565 Uncharacterized conser 56.5 39 0.00085 35.1 7.4 47 116-162 78-132 (370)
302 PRK07478 short chain dehydroge 56.4 25 0.00055 33.0 5.8 57 117-177 7-65 (254)
303 PF12368 DUF3650: Protein of u 55.7 4 8.6E-05 26.9 0.1 8 16-23 4-11 (28)
304 KOG0024 Sorbitol dehydrogenase 55.3 25 0.00054 36.2 5.6 42 116-157 170-212 (354)
305 cd08283 FDH_like_1 Glutathione 55.1 25 0.00055 35.8 5.9 43 116-158 185-228 (386)
306 KOG2352 Predicted spermine/spe 54.8 1.1E+02 0.0025 32.9 10.7 55 117-176 50-105 (482)
307 PRK08303 short chain dehydroge 54.0 25 0.00055 34.8 5.5 58 116-177 8-77 (305)
308 PRK06124 gluconate 5-dehydroge 53.6 70 0.0015 30.0 8.3 58 116-177 11-70 (256)
309 PRK07102 short chain dehydroge 53.5 61 0.0013 30.2 7.8 57 118-177 3-61 (243)
310 PF01269 Fibrillarin: Fibrilla 53.3 1.5E+02 0.0032 29.0 10.3 59 115-177 73-132 (229)
311 KOG2920 Predicted methyltransf 53.3 9.1 0.0002 38.3 2.2 38 115-153 116-153 (282)
312 PRK08213 gluconate 5-dehydroge 52.6 79 0.0017 29.7 8.5 57 117-177 13-71 (259)
313 PRK06172 short chain dehydroge 52.6 73 0.0016 29.8 8.2 58 116-177 7-66 (253)
314 PRK06125 short chain dehydroge 51.7 53 0.0011 31.0 7.1 58 117-177 8-67 (259)
315 PRK07666 fabG 3-ketoacyl-(acyl 51.5 84 0.0018 29.1 8.4 57 117-177 8-66 (239)
316 PRK07063 short chain dehydroge 51.3 83 0.0018 29.6 8.4 60 116-177 7-68 (260)
317 PRK07814 short chain dehydroge 51.2 77 0.0017 30.1 8.2 58 116-177 10-69 (263)
318 PRK08589 short chain dehydroge 50.5 39 0.00084 32.4 6.1 56 117-177 7-64 (272)
319 PRK07453 protochlorophyllide o 49.5 41 0.00088 33.2 6.2 58 116-177 6-65 (322)
320 PRK07791 short chain dehydroge 49.4 35 0.00075 33.2 5.6 57 117-177 7-74 (286)
321 PRK08339 short chain dehydroge 49.1 84 0.0018 30.0 8.2 59 117-178 9-69 (263)
322 PRK06914 short chain dehydroge 48.0 93 0.002 29.6 8.3 60 117-178 4-65 (280)
323 PRK08416 7-alpha-hydroxysteroi 48.0 49 0.0011 31.3 6.3 58 117-177 9-69 (260)
324 PRK12481 2-deoxy-D-gluconate 3 47.9 38 0.00083 32.0 5.5 56 116-177 8-65 (251)
325 PRK06949 short chain dehydroge 47.8 1E+02 0.0022 28.8 8.3 58 116-177 9-68 (258)
326 PRK06940 short chain dehydroge 47.6 55 0.0012 31.6 6.7 55 118-177 4-59 (275)
327 PRK07326 short chain dehydroge 47.5 91 0.002 28.7 7.9 56 117-177 7-64 (237)
328 COG5379 BtaA S-adenosylmethion 47.3 39 0.00084 34.5 5.5 43 115-160 63-106 (414)
329 PF03514 GRAS: GRAS domain fam 47.3 43 0.00093 34.7 6.1 47 114-160 109-166 (374)
330 PRK07454 short chain dehydroge 46.9 1.2E+02 0.0025 28.1 8.6 57 117-177 7-65 (241)
331 PRK08251 short chain dehydroge 46.7 1E+02 0.0022 28.6 8.2 59 117-177 3-63 (248)
332 PF07279 DUF1442: Protein of u 46.6 1.2E+02 0.0026 29.4 8.6 60 115-175 41-104 (218)
333 TIGR01500 sepiapter_red sepiap 46.5 91 0.002 29.4 7.9 58 118-177 2-65 (256)
334 PRK05872 short chain dehydroge 46.1 37 0.00079 33.2 5.2 57 116-177 9-67 (296)
335 PRK07677 short chain dehydroge 45.3 1.1E+02 0.0024 28.7 8.2 56 118-177 3-60 (252)
336 PRK06197 short chain dehydroge 44.8 35 0.00077 33.3 4.9 60 116-177 16-77 (306)
337 PRK06181 short chain dehydroge 44.5 1.2E+02 0.0026 28.5 8.3 56 118-177 3-60 (263)
338 PRK08226 short chain dehydroge 44.1 52 0.0011 31.0 5.8 57 116-177 6-64 (263)
339 PRK12743 oxidoreductase; Provi 43.2 62 0.0013 30.5 6.1 57 117-177 3-62 (256)
340 PRK07533 enoyl-(acyl carrier p 43.1 41 0.00088 32.0 4.9 58 116-177 10-70 (258)
341 PF13651 EcoRI_methylase: Aden 42.2 12 0.00026 38.3 1.0 12 241-252 135-146 (336)
342 PRK12384 sorbitol-6-phosphate 41.5 1.4E+02 0.0031 27.9 8.3 59 117-177 3-63 (259)
343 PRK05855 short chain dehydroge 41.2 35 0.00076 36.0 4.5 57 117-177 316-374 (582)
344 PRK08217 fabG 3-ketoacyl-(acyl 41.1 1.5E+02 0.0032 27.3 8.3 57 117-177 6-64 (253)
345 PRK08945 putative oxoacyl-(acy 40.4 1.2E+02 0.0026 28.2 7.6 59 116-177 12-72 (247)
346 PF02254 TrkA_N: TrkA-N domain 40.3 45 0.00098 27.5 4.2 45 124-177 4-50 (116)
347 KOG4589 Cell division protein 40.2 37 0.00081 32.5 3.9 34 116-149 70-104 (232)
348 PRK07062 short chain dehydroge 40.1 1.4E+02 0.003 28.1 8.1 60 116-177 8-69 (265)
349 PF13561 adh_short_C2: Enoyl-( 40.1 14 0.0003 34.7 1.1 51 123-177 1-54 (241)
350 TIGR03206 benzo_BadH 2-hydroxy 40.0 1.6E+02 0.0034 27.3 8.3 57 117-177 4-62 (250)
351 PRK08643 acetoin reductase; Va 39.9 1.5E+02 0.0032 27.7 8.2 56 118-177 4-61 (256)
352 PF02086 MethyltransfD12: D12 39.3 44 0.00096 31.7 4.5 56 94-160 8-63 (260)
353 PF00107 ADH_zinc_N: Zinc-bind 39.3 46 0.00099 27.8 4.1 32 125-157 1-32 (130)
354 KOG0022 Alcohol dehydrogenase, 39.2 59 0.0013 33.5 5.4 42 116-157 193-235 (375)
355 PF04378 RsmJ: Ribosomal RNA s 38.8 1.1E+02 0.0023 30.2 7.1 129 120-331 62-193 (245)
356 TIGR01832 kduD 2-deoxy-D-gluco 38.0 77 0.0017 29.4 5.9 55 117-177 6-62 (248)
357 PLN02989 cinnamyl-alcohol dehy 38.0 1E+02 0.0022 30.1 7.0 61 116-178 5-67 (325)
358 PRK07097 gluconate 5-dehydroge 37.9 1.6E+02 0.0035 27.8 8.2 58 116-177 10-69 (265)
359 PRK07904 short chain dehydroge 37.8 1.3E+02 0.0027 28.6 7.4 60 115-177 7-70 (253)
360 PRK06196 oxidoreductase; Provi 37.7 70 0.0015 31.5 5.7 53 117-177 27-81 (315)
361 PRK07792 fabG 3-ketoacyl-(acyl 37.4 77 0.0017 31.2 6.0 58 116-177 12-72 (306)
362 PRK12429 3-hydroxybutyrate deh 37.3 1.2E+02 0.0025 28.2 6.9 57 117-177 5-63 (258)
363 KOG0822 Protein kinase inhibit 37.3 62 0.0013 35.5 5.5 60 116-177 368-431 (649)
364 PF02737 3HCDH_N: 3-hydroxyacy 37.2 98 0.0021 28.4 6.3 41 119-161 2-44 (180)
365 PRK08993 2-deoxy-D-gluconate 3 37.0 67 0.0014 30.3 5.3 55 117-177 11-67 (253)
366 PRK05875 short chain dehydroge 36.9 1.8E+02 0.0039 27.5 8.3 59 117-177 8-68 (276)
367 PRK09242 tropinone reductase; 36.4 2E+02 0.0043 26.9 8.4 59 117-177 10-70 (257)
368 PRK07890 short chain dehydroge 36.4 1.9E+02 0.0042 26.8 8.3 57 117-177 6-64 (258)
369 PRK06935 2-deoxy-D-gluconate 3 36.3 74 0.0016 29.9 5.5 57 116-177 15-73 (258)
370 PRK05876 short chain dehydroge 36.2 1.7E+02 0.0036 28.2 8.1 57 117-177 7-65 (275)
371 PRK09424 pntA NAD(P) transhydr 35.0 79 0.0017 34.4 6.0 43 115-157 164-206 (509)
372 PRK05866 short chain dehydroge 34.8 1.8E+02 0.004 28.3 8.2 57 117-177 41-99 (293)
373 PRK06200 2,3-dihydroxy-2,3-dih 34.8 83 0.0018 29.7 5.6 54 117-177 7-62 (263)
374 PRK08085 gluconate 5-dehydroge 34.7 2.1E+02 0.0047 26.6 8.4 57 117-177 10-68 (254)
375 PF12692 Methyltransf_17: S-ad 34.7 86 0.0019 28.9 5.2 45 94-148 17-61 (160)
376 PLN02668 indole-3-acetate carb 34.4 27 0.00058 36.6 2.3 21 115-135 63-83 (386)
377 PRK06194 hypothetical protein; 34.4 1.2E+02 0.0026 29.0 6.7 57 117-177 7-65 (287)
378 PLN02780 ketoreductase/ oxidor 33.8 1.5E+02 0.0034 29.5 7.6 59 116-176 53-113 (320)
379 PRK06113 7-alpha-hydroxysteroi 33.6 2.3E+02 0.005 26.5 8.4 58 116-177 11-70 (255)
380 PLN02253 xanthoxin dehydrogena 33.1 1.7E+02 0.0036 27.9 7.4 58 116-178 18-77 (280)
381 PRK06139 short chain dehydroge 33.0 1.8E+02 0.0039 29.2 7.9 57 117-177 8-66 (330)
382 PRK08277 D-mannonate oxidoredu 32.9 2.3E+02 0.0049 26.9 8.3 57 117-177 11-69 (278)
383 PRK08594 enoyl-(acyl carrier p 32.9 81 0.0017 30.1 5.2 59 117-177 8-69 (257)
384 PRK12824 acetoacetyl-CoA reduc 32.9 1.8E+02 0.0038 26.7 7.4 57 118-177 4-62 (245)
385 PRK08703 short chain dehydroge 32.8 1.7E+02 0.0037 27.0 7.3 57 117-176 7-65 (239)
386 PRK05786 fabG 3-ketoacyl-(acyl 32.4 2.4E+02 0.0052 25.8 8.2 56 117-177 6-63 (238)
387 PRK05650 short chain dehydroge 32.3 2.1E+02 0.0045 27.1 7.9 56 118-177 2-59 (270)
388 PF05206 TRM13: Methyltransfer 31.9 65 0.0014 31.9 4.4 34 116-149 19-57 (259)
389 PRK08690 enoyl-(acyl carrier p 31.7 80 0.0017 30.1 4.9 57 117-177 7-66 (261)
390 PF10354 DUF2431: Domain of un 31.6 4E+02 0.0088 24.3 10.5 79 239-330 73-153 (166)
391 TIGR01963 PHB_DH 3-hydroxybuty 31.3 2.5E+02 0.0053 25.9 8.1 56 118-177 3-60 (255)
392 PRK06182 short chain dehydroge 30.9 82 0.0018 30.0 4.9 51 117-177 4-56 (273)
393 PRK07984 enoyl-(acyl carrier p 30.8 88 0.0019 30.1 5.1 57 117-177 7-66 (262)
394 KOG1122 tRNA and rRNA cytosine 30.7 1.1E+02 0.0024 32.7 5.9 173 115-351 241-420 (460)
395 PRK07774 short chain dehydroge 30.6 2.7E+02 0.0059 25.7 8.3 57 117-177 7-65 (250)
396 PRK07109 short chain dehydroge 30.3 2.5E+02 0.0055 28.1 8.5 57 117-177 9-67 (334)
397 PRK05565 fabG 3-ketoacyl-(acyl 30.1 3E+02 0.0064 25.2 8.4 58 117-178 6-66 (247)
398 COG1062 AdhC Zn-dependent alco 29.6 1.1E+02 0.0025 31.7 5.8 42 116-157 186-228 (366)
399 PRK06079 enoyl-(acyl carrier p 29.6 78 0.0017 29.9 4.5 55 117-177 8-65 (252)
400 KOG1269 SAM-dependent methyltr 29.5 56 0.0012 34.0 3.6 54 117-172 112-165 (364)
401 PRK08415 enoyl-(acyl carrier p 29.3 1.1E+02 0.0025 29.5 5.6 57 117-177 6-65 (274)
402 KOG2782 Putative SAM dependent 28.9 64 0.0014 31.7 3.6 46 115-160 43-88 (303)
403 PLN02662 cinnamyl-alcohol dehy 28.8 1.7E+02 0.0036 28.4 6.8 61 116-178 4-66 (322)
404 PLN03209 translocon at the inn 28.5 1.7E+02 0.0037 32.4 7.2 61 116-177 80-148 (576)
405 PRK07889 enoyl-(acyl carrier p 28.1 68 0.0015 30.5 3.8 55 117-177 8-67 (256)
406 PRK06138 short chain dehydroge 27.9 3.2E+02 0.0068 25.2 8.2 56 117-177 6-63 (252)
407 PF03721 UDPG_MGDP_dh_N: UDP-g 27.8 1.2E+02 0.0026 28.2 5.2 34 119-154 3-38 (185)
408 TIGR01712 phage_N6A_met phage 27.2 30 0.00065 32.1 1.1 9 244-252 64-72 (166)
409 PF10237 N6-adenineMlase: Prob 26.7 2E+02 0.0044 26.4 6.4 34 116-151 26-60 (162)
410 PRK07775 short chain dehydroge 26.5 3.3E+02 0.0071 26.0 8.2 57 117-177 11-69 (274)
411 PRK09186 flagellin modificatio 26.5 3.1E+02 0.0068 25.4 7.9 59 117-177 5-65 (256)
412 PRK06603 enoyl-(acyl carrier p 26.1 1.4E+02 0.0031 28.3 5.6 57 117-177 9-68 (260)
413 PRK06505 enoyl-(acyl carrier p 26.0 1.2E+02 0.0025 29.3 5.0 57 117-177 8-67 (271)
414 PRK08293 3-hydroxybutyryl-CoA 25.9 1.7E+02 0.0036 28.7 6.2 43 118-160 5-47 (287)
415 TIGR02415 23BDH acetoin reduct 25.6 3.6E+02 0.0077 24.9 8.1 56 118-177 2-59 (254)
416 PRK08159 enoyl-(acyl carrier p 25.4 1.4E+02 0.003 28.8 5.5 57 117-177 11-70 (272)
417 PRK06198 short chain dehydroge 25.4 3.1E+02 0.0068 25.5 7.8 57 117-177 7-66 (260)
418 PRK08264 short chain dehydroge 25.4 1.5E+02 0.0033 27.2 5.5 50 117-177 7-59 (238)
419 PRK08278 short chain dehydroge 25.3 1.3E+02 0.0029 28.8 5.2 57 117-177 7-72 (273)
420 PRK13394 3-hydroxybutyrate deh 25.2 2.1E+02 0.0046 26.5 6.5 57 117-177 8-66 (262)
421 PRK12939 short chain dehydroge 25.0 4E+02 0.0086 24.4 8.3 57 117-177 8-66 (250)
422 PRK09134 short chain dehydroge 25.0 1.9E+02 0.0042 27.0 6.3 57 117-177 10-69 (258)
423 PRK12744 short chain dehydroge 24.7 1.7E+02 0.0037 27.4 5.8 57 117-177 9-71 (257)
424 PRK07067 sorbitol dehydrogenas 24.3 3E+02 0.0064 25.7 7.4 54 117-177 7-62 (257)
425 PRK06720 hypothetical protein; 24.1 4.4E+02 0.0095 23.8 8.1 57 117-177 17-75 (169)
426 COG1743 Adenine-specific DNA m 23.5 1.8E+02 0.0039 33.4 6.3 99 240-338 488-625 (875)
427 PRK09291 short chain dehydroge 23.5 3.8E+02 0.0083 24.8 7.9 56 118-177 4-61 (257)
428 PRK12745 3-ketoacyl-(acyl-carr 23.4 4.1E+02 0.0089 24.6 8.1 56 118-177 4-62 (256)
429 cd05188 MDR Medium chain reduc 23.0 2E+02 0.0043 26.5 5.8 41 116-157 135-176 (271)
430 COG1189 Predicted rRNA methyla 22.9 70 0.0015 31.5 2.7 40 115-155 79-118 (245)
431 PF05869 Dam: DNA N-6-adenine- 22.8 1E+02 0.0022 28.8 3.8 10 244-253 66-75 (181)
432 KOG1709 Guanidinoacetate methy 22.6 3E+02 0.0066 27.1 6.9 58 115-176 101-158 (271)
433 PF07101 DUF1363: Protein of u 22.4 31 0.00067 29.4 0.1 11 119-129 6-16 (124)
434 COG0863 DNA modification methy 21.7 3.1E+02 0.0067 26.4 7.1 89 238-328 32-122 (302)
435 PLN00015 protochlorophyllide r 21.7 1.1E+02 0.0025 29.9 4.1 50 125-177 5-57 (308)
436 PRK07231 fabG 3-ketoacyl-(acyl 21.7 2.5E+02 0.0055 25.8 6.2 56 117-177 6-63 (251)
437 PRK07819 3-hydroxybutyryl-CoA 21.4 2.1E+02 0.0045 28.3 5.8 41 118-160 7-49 (286)
438 PLN02896 cinnamyl-alcohol dehy 21.3 3.5E+02 0.0077 26.9 7.6 57 116-177 10-68 (353)
439 COG4301 Uncharacterized conser 21.2 3.3E+02 0.0072 27.4 7.0 58 116-175 79-141 (321)
440 PRK09072 short chain dehydroge 20.9 2.8E+02 0.0061 26.0 6.5 56 117-177 6-63 (263)
441 KOG1208 Dehydrogenases with di 20.9 2.8E+02 0.0061 28.1 6.7 59 117-177 36-96 (314)
442 PRK06128 oxidoreductase; Provi 20.8 1.3E+02 0.0028 29.4 4.2 57 117-177 56-116 (300)
443 KOG1331 Predicted methyltransf 20.8 31 0.00068 34.7 -0.1 38 116-157 46-83 (293)
444 PF03492 Methyltransf_7: SAM d 20.8 1.1E+02 0.0025 31.1 3.9 22 114-135 15-36 (334)
445 PRK06114 short chain dehydroge 20.2 5.1E+02 0.011 24.2 8.1 57 117-177 9-68 (254)
446 PRK06997 enoyl-(acyl carrier p 20.2 1.8E+02 0.0038 27.8 4.9 32 117-148 7-41 (260)
447 KOG0725 Reductases with broad 20.1 2.4E+02 0.0051 27.8 5.9 60 117-177 9-70 (270)
448 PRK08267 short chain dehydroge 20.1 2.6E+02 0.0055 26.2 6.0 54 118-177 3-58 (260)
No 1
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=100.00 E-value=6.7e-82 Score=620.50 Aligned_cols=278 Identities=51% Similarity=0.945 Sum_probs=175.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeecCCCCceeeCCChHhHHHHHHHHhhhcCCcE-EEecCCCeeCCCCCc
Q 015035 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (414)
Q Consensus 13 ~~~mHprN~y~~~~~dF~~La~~yp~~~~~v~~~~~g~~~iDf~~~~a~r~Lt~~LL~~~fgl~-~~vp~gvLiPriP~R 91 (414)
++.|||||+|++ +|||++|+++||+|++||..+.+|+.+|||+|++|+++||++||++||||+ |++|+++|||++|+|
T Consensus 4 ~~~mHprN~~~~-~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R 82 (299)
T PF05971_consen 4 KKSMHPRNPYKD-RYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR 82 (299)
T ss_dssp ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred cCCCCCCCCCCC-CCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence 467999999985 789999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 015035 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (414)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~ 171 (414)
++||+||+|+|...... ....+++||||||+.|||++|+.+.++|+|+|+|||+.+++.|++|+++|++|+++|++
T Consensus 83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 99999999999864211 11268999999999999999999999999999999999999999999999459999999
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc
Q 015035 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (414)
Q Consensus 172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy 251 (414)
+++...+ .||.++....+.|||+||||||
T Consensus 159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence 9875321 3566666667899999999999
Q ss_pred cccccccc-----------C------CCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHH
Q 015035 252 FESMEEAG-----------L------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI 314 (414)
Q Consensus 252 ~~s~ee~~-----------~------~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~ 314 (414)
|++.+|+. . +|..+|+|+..||+|+|||++||++||+||..+..++.|||+||||+++++.|+
T Consensus 188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~ 267 (299)
T PF05971_consen 188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK 267 (299)
T ss_dssp -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence 99988652 1 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEEEecCCCeeEEEEEEEecc
Q 015035 315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP 346 (414)
Q Consensus 315 ~~l~~~g~~~v~~~e~~qG~t~Rw~lAWsf~~ 346 (414)
+.|++.|+.+++++++.||+|.||+|||||.+
T Consensus 268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d 299 (299)
T PF05971_consen 268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD 299 (299)
T ss_dssp HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence 99999999999999999999999999999974
No 2
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=100.00 E-value=2.2e-76 Score=574.55 Aligned_cols=338 Identities=47% Similarity=0.837 Sum_probs=292.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhCCCcccceeecCCCCceeeCCChHhHHHHHHHHhhhcCCcEEEecCCCeeCCCCCcHh
Q 015035 14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN 93 (414)
Q Consensus 14 ~~mHprN~y~~~~~dF~~La~~yp~~~~~v~~~~~g~~~iDf~~~~a~r~Lt~~LL~~~fgl~~~vp~gvLiPriP~R~~ 93 (414)
+.|||||+|+++||||+.||..||+|++||+.+.+||++|||+|++|+|+||++||++||||..++|+|+|||++|+|+|
T Consensus 5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n 84 (419)
T KOG2912|consen 5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN 84 (419)
T ss_pred cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 015035 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK 173 (414)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~ 173 (414)
|||||.|||.... ...+...+++|||||+.||+.+++.+..+|.++|+|||...+..|+.|+..|+ ++++|.+++
T Consensus 85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~ 159 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK 159 (419)
T ss_pred hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence 9999999998742 11222345899999999999999999999999999999999999999999996 999999998
Q ss_pred ccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc--CCCCcEEEEEECCCc
Q 015035 174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV--RDGEQFDFCICNPPF 251 (414)
Q Consensus 174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~--~~~~~fD~imcNPPy 251 (414)
.+-.. + ++...+ ..+..||||||||||
T Consensus 160 ~~~~k-t--------------------------------------------------ll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 160 VEPQK-T--------------------------------------------------LLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred ecchh-h--------------------------------------------------cchhhhccCccceeeEEecCCch
Confidence 85311 0 011111 124579999999999
Q ss_pred ccccccccC---------CCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCC
Q 015035 252 FESMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV 322 (414)
Q Consensus 252 ~~s~ee~~~---------~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~ 322 (414)
|+..+|++. .|..+|.|+..||+.+|||++|+.|||.+|..++.+.+|||+|+||+++++.|++.|++.|+
T Consensus 189 fe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv 268 (419)
T KOG2912|consen 189 FENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGV 268 (419)
T ss_pred hhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCC
Confidence 999777642 36678899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCeeEEEEEEEeccccccccCCccccccchhhhhh--------hhhhhhhhHHHHHHHHHHHhhcCCccc
Q 015035 323 TIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLE--------GVQRQFSALDVLQSIETFFSASGASCK 394 (414)
Q Consensus 323 ~~v~~~e~~qG~t~Rw~lAWsf~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (414)
+.|+++|++||+|.||++||||++..++.+-|++.+++..| |++ .|+-||++ .+=+.+.+| -.+|+-=.
T Consensus 269 ~kv~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s-l~~vf~~Lq~~pl~~e~~~-~i~~ilq~~-~~~~rip~ 345 (419)
T KOG2912|consen 269 TKVKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS-LLEVFYLLQNWPLDPELCA-QIDDILQKF-LDDNRIPS 345 (419)
T ss_pred ceEEEEEeeccccceeeEEeeecccccccCCchhcccchhh-HHHHHHHHhcCCCChHHHH-HHHHHHHHH-HhcCCCCC
Confidence 99999999999999999999999999999999998888866 333 24556666 333344455 55566667
Q ss_pred ccCceeEEEeeeeeee
Q 015035 395 LNASSFTVNVRFHCWI 410 (414)
Q Consensus 395 ~~~~~~~~~~~~~~~~ 410 (414)
.+.++-.+..--.+|+
T Consensus 346 k~~~~l~~~~k~~tW~ 361 (419)
T KOG2912|consen 346 KKGSVLEISTKSITWS 361 (419)
T ss_pred cCceEEEEEeeeehHH
Confidence 7778888888888886
No 3
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=100.00 E-value=3.8e-74 Score=573.02 Aligned_cols=285 Identities=40% Similarity=0.732 Sum_probs=250.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeecCCCCceeeCCChHhHHHHHHHHhhhcCCcE-EEecCCCeeCCCCCc
Q 015035 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (414)
Q Consensus 13 ~~~mHprN~y~~~~~dF~~La~~yp~~~~~v~~~~~g~~~iDf~~~~a~r~Lt~~LL~~~fgl~-~~vp~gvLiPriP~R 91 (414)
++.|||||+|+ ++|||++|+++||+|++||..+.+|+.+|||+|++|+++||++||+++|||+ |++|++.|||++|+|
T Consensus 13 ~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R 91 (321)
T PRK11727 13 KPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGR 91 (321)
T ss_pred ccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcH
Confidence 56899999999 5899999999999999999999999999999999999999999999999998 799999999999999
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 015035 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (414)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~ 171 (414)
++||+|++|+|........ ..+...++||||||+|||+++|+.+.++|+++|+|||+.|+++|++|++.|+++.++|++
T Consensus 92 ~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 9999999999975321111 123567999999999999999999999999999999999999999999999328899999
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc
Q 015035 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (414)
Q Consensus 172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy 251 (414)
+.....+ .++.++....++||+|||||||
T Consensus 171 ~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 171 RLQKDSK---------------------------------------------------AIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEccchh---------------------------------------------------hhhhcccccCCceEEEEeCCCC
Confidence 7643211 1233333345789999999999
Q ss_pred cccccccc-------------CCC--ccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHH
Q 015035 252 FESMEEAG-------------LNP--KTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (414)
Q Consensus 252 ~~s~ee~~-------------~~P--~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~ 316 (414)
|++.+++. .+| ...|+|...||+|+|||++||.+||++|..++.+++|||+|+||+++++.|++.
T Consensus 200 ~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~ 279 (321)
T PRK11727 200 HASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRA 279 (321)
T ss_pred cCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHH
Confidence 99887631 111 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEEecCCCeeEEEEEEEecccccc
Q 015035 317 LRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350 (414)
Q Consensus 317 l~~~g~~~v~~~e~~qG~t~Rw~lAWsf~~~~~~ 350 (414)
|++.|+++++++|+.||++.||++||||....++
T Consensus 280 L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~ 313 (321)
T PRK11727 280 LKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQR 313 (321)
T ss_pred HHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHh
Confidence 9999999999999999999999999999987544
No 4
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=4.2e-54 Score=404.25 Aligned_cols=261 Identities=36% Similarity=0.703 Sum_probs=234.7
Q ss_pred CCCcccceeecCCCCceeeCCChHhHHHHHHHHhhhcCCcE-EEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCC
Q 015035 36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG 114 (414)
Q Consensus 36 yp~~~~~v~~~~~g~~~iDf~~~~a~r~Lt~~LL~~~fgl~-~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~ 114 (414)
.|+|..|+..+++|+.+|||.||.|++.|+||||.+||++. |++|+|.|||++|+|++|||+++|||....-. ..+
T Consensus 1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~---~~~ 77 (292)
T COG3129 1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ---IPG 77 (292)
T ss_pred CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC---CCc
Confidence 38999999999999999999999999999999999999997 99999999999999999999999999874211 224
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+..++||||+|+.|||++++.+.++|+++|+|||+.+++.|+.++..|++++..|+++.....+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~---------------- 141 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD---------------- 141 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence 6689999999999999999999999999999999999999999999997799899998875321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCccccccccc---------------
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--------------- 259 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~--------------- 259 (414)
.||.++....|.||++||||||+++.+++.
T Consensus 142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~ 186 (292)
T COG3129 142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG 186 (292)
T ss_pred -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence 367777666799999999999999987641
Q ss_pred ---CCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCee
Q 015035 260 ---LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC 336 (414)
Q Consensus 260 ---~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~ 336 (414)
..|...++|...|++|+|||.+||.+|+++|..+.+++.|||++|.+.+++..|...|+..|...+.+.|+.||+..
T Consensus 187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~ 266 (292)
T COG3129 187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ 266 (292)
T ss_pred ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence 01445688999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEEEEecccccc
Q 015035 337 RWGLAWSFVPPARK 350 (414)
Q Consensus 337 Rw~lAWsf~~~~~~ 350 (414)
...|||||++..++
T Consensus 267 SrfIaWtf~d~eqr 280 (292)
T COG3129 267 SRFIAWTFMDDEQR 280 (292)
T ss_pred ceeEEEEeeCHHHH
Confidence 77799999987554
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-32 Score=267.06 Aligned_cols=194 Identities=21% Similarity=0.258 Sum_probs=164.0
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
.+|+|++++|.++||||| |+++.+++++...+.. ... +|||||||||||++.++++.+.++|+|+|||+
T Consensus 76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~---------~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~ 144 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQ---------LDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP 144 (280)
T ss_pred CeecceeeeeCCCceecC-CchHHHHHHHHHhhhh---------cCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence 469999999999999999 7777777665422222 112 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
+|+++|++|++.|+ + .++.+++.|.
T Consensus 145 ~Al~~A~~Na~~~~-l-~~~~~~~~dl----------------------------------------------------- 169 (280)
T COG2890 145 DALALARENAERNG-L-VRVLVVQSDL----------------------------------------------------- 169 (280)
T ss_pred HHHHHHHHHHHHcC-C-ccEEEEeeec-----------------------------------------------------
Confidence 99999999999996 7 6666666543
Q ss_pred CccccccCCCCcEEEEEECCCcccccc------cccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESME------EAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~e------e~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~m 303 (414)
|.++ .++||+|||||||++... ...++|..++.++.+ |++++++|+.++..++.++||+.++
T Consensus 170 --f~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d-------Gl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 170 --FEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD-------GLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred --cccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc-------HHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 3332 248999999999999861 123689988888778 9999999999999999999999999
Q ss_pred eCCcCCHHHHHHHHHHcC-CceEEEEEecCCCeeEEEEEEE
Q 015035 304 VGRKSNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS 343 (414)
Q Consensus 304 vgk~~~l~~l~~~l~~~g-~~~v~~~e~~qG~t~Rw~lAWs 343 (414)
+| .+|.+.+.+++.+.| +..+.+.+|..|+ .|-++++.
T Consensus 238 ~g-~~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~ 276 (280)
T COG2890 238 IG-LTQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL 276 (280)
T ss_pred EC-CCcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence 99 999999999999999 7889999999999 48777764
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=5.7e-30 Score=270.24 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=169.1
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCC---C-----C-----CCCC--CCCCCeEEEECCcccHHHHHHH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI---I-----P-----TTSR--NGDKVKGFDIGTGANCIYPLLG 134 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~---~-----~-----~~~~--~~~~~~vLDIGtGsG~I~i~La 134 (414)
++|||++|.|.++||||| |+|+..++++.+.+.... . + .... .....+|||+|||||+|++.++
T Consensus 79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 569999999999999999 889999988865543100 0 0 0000 1123589999999999999999
Q ss_pred HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 015035 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (414)
Q Consensus 135 ~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (414)
...++++|+|+|+|+.|++.|++|++.++ +.+++.++++|..+
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------ 200 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------ 200 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence 98899999999999999999999999986 87889998877421
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccc-------cCCCccccCCCCCcccccCChHHHHHHHH
Q 015035 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRII 287 (414)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~-------~~~P~~a~~g~~~Em~~~GGe~~Fv~rii 287 (414)
.+ ..++||+|||||||++..+.. .++|..|+.|+.+ ++.++++|+
T Consensus 201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d-------Gl~~~~~il 252 (506)
T PRK01544 201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED-------GLQAYFIIA 252 (506)
T ss_pred -------------------hC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc-------HHHHHHHHH
Confidence 11 135799999999999876531 3689999999988 999999999
Q ss_pred HHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEEEE
Q 015035 288 EDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341 (414)
Q Consensus 288 ~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~lA 341 (414)
+++..+++++|++.+++| .+|.+.+.+++.+.|+..+.+.+|++|+ .|.+++
T Consensus 253 ~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~ 304 (506)
T PRK01544 253 ENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI 304 (506)
T ss_pred HHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence 999999999999999999 8899999999999999999999999999 586544
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.97 E-value=2.5e-29 Score=247.09 Aligned_cols=197 Identities=22% Similarity=0.307 Sum_probs=166.5
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
++|||++|.|++++|||| |+++.+++++.+.+... ....+|||+|||||++++.++...++++++|+|+|+
T Consensus 78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~ 148 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP 148 (284)
T ss_pred ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence 579999999999999999 77887777665433211 112589999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
+|++.|++|++.++ +.++++++++|..+
T Consensus 149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~--------------------------------------------------- 176 (284)
T TIGR00536 149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE--------------------------------------------------- 176 (284)
T ss_pred HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence 99999999999996 77789999887431
Q ss_pred CccccccCCCCcEEEEEECCCccccccc------ccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee------~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~m 303 (414)
.+ ...+||+|||||||++..+. ..++|..++.|+.+ ++.++++|++++..+++++|++.++
T Consensus 177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d-------gl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 177 ----PL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD-------GLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred ----cC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc-------HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 12379999999999987642 23689999999888 8999999999999999999999999
Q ss_pred eCCcCCHHHHHHHHH-HcCCceEEEEEecCCCeeEEEEEE
Q 015035 304 VGRKSNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW 342 (414)
Q Consensus 304 vgk~~~l~~l~~~l~-~~g~~~v~~~e~~qG~t~Rw~lAW 342 (414)
+| ..|...+.+++. +.|+..+++.+|++|+ .|+++++
T Consensus 244 ~g-~~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~ 281 (284)
T TIGR00536 244 IG-NWQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF 281 (284)
T ss_pred EC-ccHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence 99 889999999998 4789899999999999 5988875
No 8
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.97 E-value=3.3e-29 Score=256.93 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=163.3
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
++|||++|.|++++|||| |+++.+++++.+.+. ...++||||||||+|++.++.+.++++++|+|+|+
T Consensus 218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 469999999999999999 666666655543321 12489999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
.|++.|++|++.++ . +++++++|..+.
T Consensus 286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~-------------------------------------------------- 312 (423)
T PRK14966 286 PALETARKNAADLG-A--RVEFAHGSWFDT-------------------------------------------------- 312 (423)
T ss_pred HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence 99999999999885 3 799998875320
Q ss_pred CccccccCCCCcEEEEEECCCccccccc------ccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee------~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~m 303 (414)
.+ ...++||+|+|||||++..+. ..+||..++.|+++ ++.|+++|++++..+++++|++.++
T Consensus 313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d-------GL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD-------GLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred -cc----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc-------hHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 013479999999999986542 13689999999888 9999999999999999999999999
Q ss_pred eCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEEEEE
Q 015035 304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (414)
Q Consensus 304 vgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (414)
+| .+|.+.+.+.+++.|+..+++.+|++|+ .|.+++.
T Consensus 381 iG-~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~ 417 (423)
T PRK14966 381 HG-FDQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK 417 (423)
T ss_pred EC-ccHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence 99 7999999999999999999999999999 5888775
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.95 E-value=5.4e-27 Score=226.11 Aligned_cols=205 Identities=16% Similarity=0.169 Sum_probs=161.0
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
.+|-+|++.+-+|||||| |+|+++++|+.|.+..... .++..+||+|||||||++.|++.++..+|+|+|.|+
T Consensus 110 ~~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~~------~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 110 QPFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSEH------SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK 182 (328)
T ss_pred CccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhhh------cccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence 357889999999999999 8899999999988875321 233479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
.|+.+|.+|++++. +.++|.+++.+....
T Consensus 183 ~Ai~La~eN~qr~~-l~g~i~v~~~~me~d-------------------------------------------------- 211 (328)
T KOG2904|consen 183 AAIKLAKENAQRLK-LSGRIEVIHNIMESD-------------------------------------------------- 211 (328)
T ss_pred HHHHHHHHHHHHHh-hcCceEEEecccccc--------------------------------------------------
Confidence 99999999999996 999999997653210
Q ss_pred CccccccCCCCcEEEEEECCCcccccccc-------cCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee~-------~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
.+.......+++|+++|||||+.+.+.. .+||+.|+.|+.+ +..++..+..-+.+.+.++|++..
T Consensus 212 -~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-------G~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 212 -ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-------GYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred -cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-------hhHHHHHHHHhhHhhcccCCeEEE
Confidence 0000001257899999999999987643 3799999999998 999999999999999999999888
Q ss_pred EeCCcCCHHHHHHHH----HHcCCceEEEEEecCCCeeEEEEE
Q 015035 303 MVGRKSNLKFLISKL----RKVGVTIVKTTEFVQGQTCRWGLA 341 (414)
Q Consensus 303 mvgk~~~l~~l~~~l----~~~g~~~v~~~e~~qG~t~Rw~lA 341 (414)
+++...+-..+++.+ .+--...+++..|..|+. |+++.
T Consensus 284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~-Rfv~i 325 (328)
T KOG2904|consen 284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRP-RFVII 325 (328)
T ss_pred EecccccCcHHHHHHHHhchhhccchhheeecccCCc-ceEEE
Confidence 887333333333332 222345677888888884 77653
No 10
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=216.79 Aligned_cols=195 Identities=23% Similarity=0.339 Sum_probs=163.7
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
.+|||++|.+.+++|+|| |+++.+++++.+.+.. ....+|||+|||+|++++.++...+.++++|+|+++
T Consensus 73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~ 142 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP 142 (275)
T ss_pred ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence 569999999999999999 7787777777644322 234689999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
.+++.|++|++ +. ...++.++.+|..+
T Consensus 143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~--------------------------------------------------- 169 (275)
T PRK09328 143 EALAVARRNAK-HG-LGARVEFLQGDWFE--------------------------------------------------- 169 (275)
T ss_pred HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence 99999999998 32 45679998887421
Q ss_pred CccccccCCCCcEEEEEECCCcccccccc-------cCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee~-------~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
.. ..++||+|+|||||++..+.. .++|..++.++.+ ++.++.++++++..+++++|++.+
T Consensus 170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~-------g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED-------GLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ----cC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 11 135899999999999865421 3689999988888 899999999999999999999999
Q ss_pred EeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEEEEE
Q 015035 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (414)
Q Consensus 303 mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (414)
++| ..+.+.+.+.|.+.|+..+.+..|+.|+ .|+++++
T Consensus 237 e~g-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~ 274 (275)
T PRK09328 237 EIG-YDQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR 274 (275)
T ss_pred EEC-chHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence 999 7888999999999999999999999999 5888764
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.94 E-value=9.9e-26 Score=222.05 Aligned_cols=178 Identities=18% Similarity=0.241 Sum_probs=146.4
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHH-HHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
++|+|++|.|++++|||| |.++.++.+... ++.. ....+|||+|||+|++++.++...++++++|+|+|
T Consensus 85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 468999999999999999 667776655432 2221 12358999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (414)
Q Consensus 149 ~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (414)
+.|++.|++|++.++ +.++|+++++|..+
T Consensus 155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~-------------------------------------------------- 183 (284)
T TIGR03533 155 PDALAVAEINIERHG-LEDRVTLIQSDLFA-------------------------------------------------- 183 (284)
T ss_pred HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999996 87889999887421
Q ss_pred CCccccccCCCCcEEEEEECCCccccccc------ccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 229 PPVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 229 ~~il~~~~~~~~~fD~imcNPPy~~s~ee------~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
.+ ..++||+|+|||||++..+. ..++|..++.|+.+ ++.++++++.++..+++++|++.+
T Consensus 184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d-------Gl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED-------GLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred -----cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 13479999999999986542 23588889888888 999999999999999999999999
Q ss_pred EeCCcCCHHHHHHHHHHcCCce
Q 015035 303 MVGRKSNLKFLISKLRKVGVTI 324 (414)
Q Consensus 303 mvgk~~~l~~l~~~l~~~g~~~ 324 (414)
++| .++ +.+.+.+.+.|+..
T Consensus 250 e~g-~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 250 EVG-NSM-EALEEAYPDVPFTW 269 (284)
T ss_pred EEC-cCH-HHHHHHHHhCCCce
Confidence 999 455 79999999988753
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.93 E-value=4.8e-25 Score=219.55 Aligned_cols=178 Identities=18% Similarity=0.245 Sum_probs=143.8
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHH-HHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
++|+|++|.|++++|||| |.++..+.++.. ++.. ....+|||+|||+|++++.++...++++|+|+|+|
T Consensus 97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 569999999999999999 556666654432 2221 11258999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (414)
Q Consensus 149 ~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (414)
+.|++.|++|++.++ +.++|+++++|..+
T Consensus 167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~-------------------------------------------------- 195 (307)
T PRK11805 167 PDALAVAEINIERHG-LEDRVTLIESDLFA-------------------------------------------------- 195 (307)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999996 87889999887421
Q ss_pred CCccccccCCCCcEEEEEECCCccccccc------ccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 229 PPVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 229 ~~il~~~~~~~~~fD~imcNPPy~~s~ee------~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
.+ ..++||+|||||||+...+. ..++|..++.|+.+ ++.+++++++.+..+++++|++.+
T Consensus 196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d-------Gl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD-------GLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -----hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc-------hHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 13479999999999986442 13689999988888 899999999999999999999999
Q ss_pred EeCCcCCHHHHHHHHHHcCCce
Q 015035 303 MVGRKSNLKFLISKLRKVGVTI 324 (414)
Q Consensus 303 mvgk~~~l~~l~~~l~~~g~~~ 324 (414)
++| .++ ..+.+.+.+.++..
T Consensus 262 E~g-~~~-~~~~~~~~~~~~~~ 281 (307)
T PRK11805 262 EVG-NSR-VHLEEAYPDVPFTW 281 (307)
T ss_pred EEC-cCH-HHHHHHHhhCCCEE
Confidence 999 444 45888888877543
No 13
>PLN02672 methionine S-methyltransferase
Probab=99.93 E-value=2.9e-25 Score=249.01 Aligned_cols=185 Identities=13% Similarity=0.077 Sum_probs=146.6
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
++|||+++.|.++||||| |+++.+++++.. .... ..+..+|||||||||||++.|+++.+..+|+|+|||+
T Consensus 82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~-~~~~-------~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~ 152 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNR-HPDS-------IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP 152 (1082)
T ss_pred EEecCCceeeCCCcccCc-hhHHHHHHHHHh-cccc-------cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence 479999999999999999 777777766322 1100 0123589999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHCCCC---------------CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l---------------~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (414)
+|+++|++|++.|+ + .++|+++++|..+
T Consensus 153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------ 195 (1082)
T PLN02672 153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------ 195 (1082)
T ss_pred HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence 99999999999874 3 2578888887532
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccc-------cCC---------CccccCC---CCCcccc
Q 015035 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLN---------PKTSCGG---TPEEMVC 275 (414)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~-------~~~---------P~~a~~g---~~~Em~~ 275 (414)
.+.....+||+|||||||++..+.. .++ |..++.| +.+
T Consensus 196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d---- 252 (1082)
T PLN02672 196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF---- 252 (1082)
T ss_pred -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc----
Confidence 1100123699999999999876522 133 4677765 477
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHH-HHHHHcCCceEEE
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT 327 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~-~~l~~~g~~~v~~ 327 (414)
|+.||++|++++..+++++||+.+++| ..|.+.+. +++++.|+..+++
T Consensus 253 ---GL~~yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 253 ---GLGLIARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred ---HHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence 999999999999999999999999999 99999999 6999999765444
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.92 E-value=2.6e-24 Score=208.51 Aligned_cols=186 Identities=14% Similarity=0.180 Sum_probs=147.0
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
.+|+|++|.+++++|+|| +.++.++.++.+.+... ....++||+|||+|++++.+++..++.+++|+|+|+
T Consensus 50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~ 120 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP 120 (251)
T ss_pred CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence 568999999999999998 55666766665544320 123589999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
.|++.|++|++.|+ ++++++|..+.
T Consensus 121 ~al~~A~~N~~~~~-----~~~~~~D~~~~-------------------------------------------------- 145 (251)
T TIGR03704 121 AAVRCARRNLADAG-----GTVHEGDLYDA-------------------------------------------------- 145 (251)
T ss_pred HHHHHHHHHHHHcC-----CEEEEeechhh--------------------------------------------------
Confidence 99999999999874 36777764310
Q ss_pred CccccccCCCCcEEEEEECCCccccccc-------ccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEE-------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee-------~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
+... ..++||+|+|||||++..+. ..++|..++.|+.+ ++.++++|++.+..+++++|++.+
T Consensus 146 --l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d-------gl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 146 --LPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD-------GLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred --cchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0000 02479999999999976432 23678888888888 999999999999999999999988
Q ss_pred EeCCcCCHHHHHHHHHHcCCc-eEEEEEec
Q 015035 303 MVGRKSNLKFLISKLRKVGVT-IVKTTEFV 331 (414)
Q Consensus 303 mvgk~~~l~~l~~~l~~~g~~-~v~~~e~~ 331 (414)
+++ .+|..++...|++.|+. .+...+|+
T Consensus 215 ~~~-~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 215 ETS-ERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred EEC-cchHHHHHHHHHHCCCCceeeEcccc
Confidence 888 78999999999999974 34444444
No 15
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=2.3e-23 Score=198.36 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=158.8
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
.++||..+.++.++++|+ |.+..++.++.+.+.. ...+|||+|||+|+++..++...++++++|+|+++
T Consensus 53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~ 121 (251)
T TIGR03534 53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP 121 (251)
T ss_pred ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence 468999999999999999 6677777666555431 23589999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (414)
.+++.|++|++.++ +. ++.++++|..+
T Consensus 122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~--------------------------------------------------- 148 (251)
T TIGR03534 122 EALAVARKNAARLG-LD-NVTFLQSDWFE--------------------------------------------------- 148 (251)
T ss_pred HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence 99999999999885 64 68888876421
Q ss_pred CccccccCCCCcEEEEEECCCcccccccc-------cCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEE
Q 015035 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (414)
Q Consensus 230 ~il~~~~~~~~~fD~imcNPPy~~s~ee~-------~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~ 302 (414)
.. ..++||+|+|||||+...+.. .++|..++.++.+ ++.++..+++.+..+++++|++..
T Consensus 149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 00 146899999999999754321 2478888777776 889999999999999999999999
Q ss_pred EeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEE
Q 015035 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339 (414)
Q Consensus 303 mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~ 339 (414)
+++ ..+...+.+.|++.|+..+.+..|..|+ .|++
T Consensus 216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~ 250 (251)
T TIGR03534 216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVV 250 (251)
T ss_pred EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCee
Confidence 998 7889999999999999999999999888 4765
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.87 E-value=6.9e-22 Score=190.67 Aligned_cols=169 Identities=26% Similarity=0.325 Sum_probs=129.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..+|||||||+|+++++||++.+.++++|||+++++.+.|++|++.|+ ++++|++++.|..+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~---------------- 107 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEF---------------- 107 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHh----------------
Confidence 579999999999999999999888999999999999999999999996 999999999996531
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
.... ...+||+||||||||...+. .++.....-+.+|..+
T Consensus 108 ------------------------------------~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 108 ------------------------------------LKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL 147 (248)
T ss_pred ------------------------------------hhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence 1111 12479999999999997765 2222222334443322
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEEEEEEeccccccc
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKI 351 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~lAWsf~~~~~~~ 351 (414)
-...+++-+..+++++|.+ +||.+..++.+++..|++.++. .+...|++.+..+ -|-..+.++.+.
T Consensus 148 ------~le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~~k--~A~~vLv~~~k~ 213 (248)
T COG4123 148 ------DLEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKIGK--AANRVLVEAIKG 213 (248)
T ss_pred ------CHHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCCCC--cceEEEEEEecC
Confidence 2566778888888888876 7899999999999999999986 6677788776543 344444444444
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=5.7e-19 Score=161.12 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=116.4
Q ss_pred cEEEecCCCeeCCCCCcHhHH-HHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHH
Q 015035 75 LNWWIPDGQLCPTVPNRSNYI-HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (414)
Q Consensus 75 l~~~vp~gvLiPriP~R~~yi-~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~ 153 (414)
++|..++|++.|+ +.++- ..+.+.+... ...++||||||+|+|++.++++.+.++|+++|+++.|++
T Consensus 2 ~~~~~~~gvFs~~---~~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 2 LEFITHPGVFSPP---RLDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEEETTSTTTT---SHHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred EEEEECCCeeCCC---CCCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 5789999999865 44332 1333444321 346899999999999999999999889999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 015035 154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV 233 (414)
Q Consensus 154 ~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 233 (414)
.|++|++.|+ +++ ++++..|..+
T Consensus 70 ~a~~n~~~n~-~~~-v~~~~~d~~~------------------------------------------------------- 92 (170)
T PF05175_consen 70 LAKRNAERNG-LEN-VEVVQSDLFE------------------------------------------------------- 92 (170)
T ss_dssp HHHHHHHHTT-CTT-EEEEESSTTT-------------------------------------------------------
T ss_pred HHHHHHHhcC-ccc-cccccccccc-------------------------------------------------------
Confidence 9999999996 776 9999887532
Q ss_pred cccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHH
Q 015035 234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL 313 (414)
Q Consensus 234 ~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l 313 (414)
.+ ..++||+|+|||||... ..+ +..++.++++++..+++++|.+.+.+.+....+.+
T Consensus 93 ~~--~~~~fD~Iv~NPP~~~~--------------~~~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~ 149 (170)
T PF05175_consen 93 AL--PDGKFDLIVSNPPFHAG--------------GDD-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL 149 (170)
T ss_dssp TC--CTTCEEEEEE---SBTT--------------SHC-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH
T ss_pred cc--cccceeEEEEccchhcc--------------ccc-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH
Confidence 11 14789999999996432 233 67899999999999999999887666666666666
Q ss_pred HHHHHHcCCceEEEEEec
Q 015035 314 ISKLRKVGVTIVKTTEFV 331 (414)
Q Consensus 314 ~~~l~~~g~~~v~~~e~~ 331 (414)
++.+ +..+++.+..
T Consensus 150 l~~~----f~~~~~~~~~ 163 (170)
T PF05175_consen 150 LKEL----FGDVEVVAKN 163 (170)
T ss_dssp HHHH----HS--EEEEEE
T ss_pred HHHh----cCCEEEEEEC
Confidence 3222 3345665543
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.75 E-value=1.1e-16 Score=151.83 Aligned_cols=173 Identities=19% Similarity=0.250 Sum_probs=126.7
Q ss_pred cCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 72 ~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
.-|+.+.++++++.|.. .+.... +.+....+ ....+|||+|||+|.+++.++.. ...+++|+|+|+.+
T Consensus 4 ~~~~~~~~~~g~~~p~~-ds~~l~----~~l~~~~~------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~ 71 (223)
T PRK14967 4 TPPDALLRAPGVYRPQE-DTQLLA----DALAAEGL------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRA 71 (223)
T ss_pred CCCceeecCCCCcCCCC-cHHHHH----HHHHhccc------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHH
Confidence 34788999999999983 332222 33322111 12368999999999999888764 33499999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 015035 152 LEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV 231 (414)
Q Consensus 152 l~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (414)
++.|++|++.++ + ++.+++.|...
T Consensus 72 l~~a~~n~~~~~-~--~~~~~~~d~~~----------------------------------------------------- 95 (223)
T PRK14967 72 VRSARLNALLAG-V--DVDVRRGDWAR----------------------------------------------------- 95 (223)
T ss_pred HHHHHHHHHHhC-C--eeEEEECchhh-----------------------------------------------------
Confidence 999999999885 5 47777765321
Q ss_pred cccccCCCCcEEEEEECCCcccccccc--cCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCC
Q 015035 232 LVGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN 309 (414)
Q Consensus 232 l~~~~~~~~~fD~imcNPPy~~s~ee~--~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~ 309 (414)
.+ ..++||+|+|||||+...+.. ...|..++.++.+ +..++.++++++..+++++|.+.+......+
T Consensus 96 --~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~ 164 (223)
T PRK14967 96 --AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSG 164 (223)
T ss_pred --hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccC
Confidence 00 235899999999999765432 2345555555555 6778899999999999999987665565568
Q ss_pred HHHHHHHHHHcCCc
Q 015035 310 LKFLISKLRKVGVT 323 (414)
Q Consensus 310 l~~l~~~l~~~g~~ 323 (414)
...+...+++.|+.
T Consensus 165 ~~~~~~~l~~~g~~ 178 (223)
T PRK14967 165 VERTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHHHCCCC
Confidence 88999999998875
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.68 E-value=2.5e-15 Score=137.58 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=105.0
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (414)
.+|||+|||+|.++..++...+ +++|+|+|+.+++.|++|++.++ + +++++..|...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~------------------ 77 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFK------------------ 77 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccc------------------
Confidence 5799999999999998887543 89999999999999999999885 4 47777766321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCC--CccccCCCCCccc
Q 015035 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLN--PKTSCGGTPEEMV 274 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~--P~~a~~g~~~Em~ 274 (414)
. ..++||+|+|||||++..+..... ...++.++.+
T Consensus 78 -------------------------------------~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~--- 114 (179)
T TIGR00537 78 -------------------------------------G---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKD--- 114 (179)
T ss_pred -------------------------------------c---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCc---
Confidence 0 124799999999998764332111 1223333333
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCce
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~ 324 (414)
+...+.+++++...+++++|.+.+......+...+...|++.|+..
T Consensus 115 ----~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 115 ----GRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY 160 (179)
T ss_pred ----hHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence 4566888999999999999988777666777999999999999863
No 20
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.1e-14 Score=143.78 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=110.2
Q ss_pred cCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 72 ~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
-+++.|.-.+||+.=. ++++= .++|... ++ .....+|||+|||.|.|++.|++..|..+++.+|+|..|
T Consensus 126 ~~~~~~~t~pGVFS~~---~lD~G---S~lLl~~-l~----~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 126 GHELTFKTLPGVFSRD---KLDKG---SRLLLET-LP----PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred cCceEEEeCCCCCcCC---CcChH---HHHHHHh-CC----ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 5566677777777653 33332 2222221 11 122348999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 015035 152 LEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV 231 (414)
Q Consensus 152 l~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (414)
++.|++|++.|+ ++.. .++.++..
T Consensus 195 v~~ar~Nl~~N~-~~~~-~v~~s~~~------------------------------------------------------ 218 (300)
T COG2813 195 VESARKNLAANG-VENT-EVWASNLY------------------------------------------------------ 218 (300)
T ss_pred HHHHHHhHHHcC-CCcc-EEEEeccc------------------------------------------------------
Confidence 999999999996 6644 56655532
Q ss_pred cccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHH
Q 015035 232 LVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK 311 (414)
Q Consensus 232 l~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~ 311 (414)
.++ .++||+|+|||||....+ . ......+||+++...++.+|-+. +|.. ...
T Consensus 219 -~~v---~~kfd~IisNPPfh~G~~--------------v-------~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l 270 (300)
T COG2813 219 -EPV---EGKFDLIISNPPFHAGKA--------------V-------VHSLAQEIIAAAARHLKPGGELW-IVAN--RHL 270 (300)
T ss_pred -ccc---cccccEEEeCCCccCCcc--------------h-------hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCC
Confidence 222 248999999999985321 1 34456799999999999998764 4542 333
Q ss_pred HHHHHHHHcCCceEEEEE
Q 015035 312 FLISKLRKVGVTIVKTTE 329 (414)
Q Consensus 312 ~l~~~l~~~g~~~v~~~e 329 (414)
....+|++. |.++++..
T Consensus 271 ~y~~~L~~~-Fg~v~~la 287 (300)
T COG2813 271 PYEKKLKEL-FGNVEVLA 287 (300)
T ss_pred ChHHHHHHh-cCCEEEEE
Confidence 344445443 34455443
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.64 E-value=1.8e-15 Score=127.75 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=85.6
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (414)
.+|||+|||+|.+.+.+++.. ..+++|+|+|+.++++|++|+..++ +.+++++++.|...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------ 61 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------ 61 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence 479999999999999888876 7899999999999999999999996 88899999998531
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccccc
Q 015035 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~ 276 (414)
+... ...++||+|+|||||+........
T Consensus 62 ----------------------------------~~~~--~~~~~~D~Iv~npP~~~~~~~~~~---------------- 89 (117)
T PF13659_consen 62 ----------------------------------LPEP--LPDGKFDLIVTNPPYGPRSGDKAA---------------- 89 (117)
T ss_dssp ----------------------------------HHHT--CTTT-EEEEEE--STTSBTT--------------------
T ss_pred ----------------------------------chhh--ccCceeEEEEECCCCccccccchh----------------
Confidence 0000 135789999999999865322110
Q ss_pred CChHHHHHHHHHHHHHhhccCcEEEEEe
Q 015035 277 GGERAFITRIIEDSVALKQTFRWYTSMV 304 (414)
Q Consensus 277 GGe~~Fv~rii~eS~~l~~~~~w~t~mv 304 (414)
....+.++++.+.++++++|.+.+.+
T Consensus 90 --~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 90 --LRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 01166788888899999999887655
No 22
>PRK14968 putative methyltransferase; Provisional
Probab=99.64 E-value=2e-14 Score=130.63 Aligned_cols=146 Identities=22% Similarity=0.324 Sum_probs=108.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~r-I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
..++||+|||+|.++..++.+ +.+++|+|+|+.+++.|++|+..++ +.++ +.+++.|..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~---------------- 84 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFE---------------- 84 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccc----------------
Confidence 358999999999999988876 6899999999999999999999885 6544 7777766321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCC--ccccCCCCCc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNP--KTSCGGTPEE 272 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P--~~a~~g~~~E 272 (414)
.. ...+||+|++||||+........++ ..++.++..
T Consensus 85 ---------------------------------------~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~- 122 (188)
T PRK14968 85 ---------------------------------------PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD- 122 (188)
T ss_pred ---------------------------------------cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC-
Confidence 11 1237999999999987532211111 112222222
Q ss_pred ccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEE
Q 015035 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT 328 (414)
Q Consensus 273 m~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~ 328 (414)
+...+..+++++..+++++|++...++.....+.+.+.+.+.|+......
T Consensus 123 ------~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 123 ------GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ------hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 45678889999999999999988888867788999999999998755443
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=1.2e-14 Score=148.73 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=100.8
Q ss_pred CCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 73 fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
.++.+.-.+||+... +++.= ..++... ++. ....+|||||||+|+|++.++++.|..+|+++|+|+.|+
T Consensus 197 ~~~~~~~~~gVFs~~---~LD~G---trllL~~-lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av 265 (378)
T PRK15001 197 TDWTIHNHANVFSRT---GLDIG---ARFFMQH-LPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV 265 (378)
T ss_pred ceEEEEecCCccCCC---CcChH---HHHHHHh-CCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 355666678888864 44421 1112111 111 123589999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCC--CcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015035 153 EWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP 230 (414)
Q Consensus 153 ~~A~~N~~~n~~l~--~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (414)
+.|++|++.|+ .+ .+++++..|..
T Consensus 266 ~~A~~N~~~n~-~~~~~~v~~~~~D~l----------------------------------------------------- 291 (378)
T PRK15001 266 ASSRLNVETNM-PEALDRCEFMINNAL----------------------------------------------------- 291 (378)
T ss_pred HHHHHHHHHcC-cccCceEEEEEcccc-----------------------------------------------------
Confidence 99999999885 43 36777766532
Q ss_pred ccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCC
Q 015035 231 VLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR 306 (414)
Q Consensus 231 il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk 306 (414)
..+ ..++||+|+|||||+.... .. .....+|+.++.+.++++|++.+...+
T Consensus 292 --~~~--~~~~fDlIlsNPPfh~~~~------------~~---------~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 292 --SGV--EPFRFNAVLCNPPFHQQHA------------LT---------DNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred --ccC--CCCCEEEEEECcCcccCcc------------CC---------HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 111 1357999999999984211 01 123568999999999999988655443
No 24
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=127.30 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=115.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
..-++|||||||++...|++.. +++...++||+|.|++..++.++.|+ . ++.+++.|..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~--~~~~V~tdl~----------------- 103 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-V--HIDVVRTDLL----------------- 103 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-C--ccceeehhHH-----------------
Confidence 4578999999999999988764 67889999999999999999999995 3 4778877642
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccc-c-CCCccccCCCCCc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-G-LNPKTSCGGTPEE 272 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~-~-~~P~~a~~g~~~E 272 (414)
.++. .++.|+++-||||.++.++. + ..-..+.+|+.+
T Consensus 104 --------------------------------------~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~- 142 (209)
T KOG3191|consen 104 --------------------------------------SGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKD- 142 (209)
T ss_pred --------------------------------------hhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcc-
Confidence 2221 37899999999999976543 1 223456678887
Q ss_pred ccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceE
Q 015035 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIV 325 (414)
Q Consensus 273 m~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v 325 (414)
|.+...+++.....++.+.|||....-+....+++.+.++..|+...
T Consensus 143 ------Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 143 ------GREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred ------hHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 88899999999999999999998777777788999999999998633
No 25
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=6.3e-13 Score=134.63 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=88.1
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (414)
.+|||+|||+|.++..++++.++.+++++|+|+.|++.|++|++.|+ +. .+++..|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~------------------- 255 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVF------------------- 255 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccc-------------------
Confidence 58999999999999999998888999999999999999999999996 64 345544421
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccccc
Q 015035 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~ 276 (414)
..+ .++||+|+|||||+.... .
T Consensus 256 ------------------------------------~~~---~~~fDlIvsNPPFH~g~~--------------~----- 277 (342)
T PRK09489 256 ------------------------------------SDI---KGRFDMIISNPPFHDGIQ--------------T----- 277 (342)
T ss_pred ------------------------------------ccc---CCCccEEEECCCccCCcc--------------c-----
Confidence 111 357999999999974211 1
Q ss_pred CChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHH
Q 015035 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS 315 (414)
Q Consensus 277 GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~ 315 (414)
...-..+++.++..+++++|.+.+...+.-....+++
T Consensus 278 --~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 278 --SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred --cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence 2345788999999999999988654443333444443
No 26
>PHA03412 putative methyltransferase; Provisional
Probab=99.49 E-value=1.6e-13 Score=132.03 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCeEEEECCcccHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~---~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~ 192 (414)
..+|||+|||+|+|++.++++. +..+|+|+|||+.|+++|++|+. ++.++++|...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~-------------- 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT-------------- 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence 4699999999999999998764 35699999999999999998853 26677776431
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCc
Q 015035 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (414)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~E 272 (414)
. . ..++||+|||||||+..... . ..+...
T Consensus 109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~~-----d--~~ar~~- 137 (241)
T PHA03412 109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKTS-----D--FKGKYT- 137 (241)
T ss_pred ---------------------------------------c-c---ccCCccEEEECCCCCCcccc-----c--cCCccc-
Confidence 0 0 13589999999999974310 0 012222
Q ss_pred ccccCChHHHHHHHHHHHHHhhccCcE
Q 015035 273 MVCSGGERAFITRIIEDSVALKQTFRW 299 (414)
Q Consensus 273 m~~~GGe~~Fv~rii~eS~~l~~~~~w 299 (414)
+..+..++|+.+.+++..+++
T Consensus 138 ------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 138 ------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEE
Confidence 567888899999988777775
No 27
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3e-12 Score=118.88 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=100.7
Q ss_pred CCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 015035 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (414)
Q Consensus 88 iP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~ 167 (414)
++.-..|+.|+..+... -+...|+|+|||||.+++..+. +...+|+|+|+|++|++.|++|+.++ .+
T Consensus 27 p~~~Aa~il~~a~~~g~---------l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l---~g 93 (198)
T COG2263 27 PAPLAAYILWVAYLRGD---------LEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL---LG 93 (198)
T ss_pred ChHHHHHHHHHHHHcCC---------cCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh---CC
Confidence 34567888888875443 1345799999999999876554 23359999999999999999999984 36
Q ss_pred cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEE
Q 015035 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (414)
Q Consensus 168 rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imc 247 (414)
+|.++..|..+ -..+||.++.
T Consensus 94 ~v~f~~~dv~~-----------------------------------------------------------~~~~~dtvim 114 (198)
T COG2263 94 DVEFVVADVSD-----------------------------------------------------------FRGKFDTVIM 114 (198)
T ss_pred ceEEEEcchhh-----------------------------------------------------------cCCccceEEE
Confidence 79999888642 1357899999
Q ss_pred CCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCc
Q 015035 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (414)
Q Consensus 248 NPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~ 323 (414)
||||-..... . ...|+..-++-| .+. .-+++..+...+.+..+++|.+
T Consensus 115 NPPFG~~~rh------------a--------Dr~Fl~~Ale~s-------~vV-YsiH~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 115 NPPFGSQRRH------------A--------DRPFLLKALEIS-------DVV-YSIHKAGSRDFVEKFAADLGGT 162 (198)
T ss_pred CCCCcccccc------------C--------CHHHHHHHHHhh-------heE-EEeeccccHHHHHHHHHhcCCe
Confidence 9999754221 1 467777766655 222 2467778999999999999965
No 28
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=122.64 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=66.6
Q ss_pred hcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHH
Q 015035 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (414)
Q Consensus 71 ~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~ 150 (414)
.++|+.+.+|++--. | |.+....+-+.+.+... ....++||+|||+|++++.++.+. ..+|+++|++++
T Consensus 19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 478999999885322 4 44443333333433321 123589999999999998654443 369999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 151 Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+++.|++|++.++ +. ++++++.|.
T Consensus 88 a~~~a~~Nl~~~~-~~-~v~~~~~D~ 111 (199)
T PRK10909 88 VAQQLIKNLATLK-AG-NARVVNTNA 111 (199)
T ss_pred HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence 9999999999996 64 688888774
No 29
>PHA03411 putative methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=127.90 Aligned_cols=135 Identities=15% Similarity=0.050 Sum_probs=93.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..+|||+|||+|.+++.++.+.++.+|+|+|+|+.+++.|++|.. +++++++|..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e----------------- 120 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE----------------- 120 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh-----------------
Confidence 358999999999999888877667899999999999999998741 36777776431
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+ . ..++||+|+|||||+....+.. ....+..|+..
T Consensus 121 -----------------------------------~----~-~~~kFDlIIsNPPF~~l~~~d~-~~~~~~~GG~~---- 155 (279)
T PHA03411 121 -----------------------------------F----E-SNEKFDVVISNPPFGKINTTDT-KDVFEYTGGEF---- 155 (279)
T ss_pred -----------------------------------h----c-ccCCCcEEEEcCCccccCchhh-hhhhhhccCcc----
Confidence 0 0 1357999999999997433221 12233444443
Q ss_pred cCChHHH--HHHHHHHHHHhhccCcEEEEEeC-Cc-----CCHHHHHHHHHHcCC
Q 015035 276 SGGERAF--ITRIIEDSVALKQTFRWYTSMVG-RK-----SNLKFLISKLRKVGV 322 (414)
Q Consensus 276 ~GGe~~F--v~rii~eS~~l~~~~~w~t~mvg-k~-----~~l~~l~~~l~~~g~ 322 (414)
+..+ +.+++.....++.+.|++....+ +. -.-.+..+.|++.|+
T Consensus 156 ---g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 156 ---EFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred ---ccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 3344 47888888878777766543333 11 134778889999886
No 30
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=1.6e-11 Score=123.30 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=102.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.++||+|||+|.+.+.++. .+.+++|+|+|+.+++.|++|++.++ +.+ +.+++.|..+
T Consensus 183 g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~----------------- 241 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK----------------- 241 (329)
T ss_pred cCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence 45899999999998776543 57899999999999999999999986 765 7887777432
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+ + ...++||+|+|||||....... ...
T Consensus 242 ------------------------------------l-~--~~~~~~D~Iv~dPPyg~~~~~~----------~~~---- 268 (329)
T TIGR01177 242 ------------------------------------L-P--LSSESVDAIATDPPYGRSTTAA----------GDG---- 268 (329)
T ss_pred ------------------------------------C-C--cccCCCCEEEECCCCcCccccc----------CCc----
Confidence 0 0 0136899999999997532111 010
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEe-cCCCeeEEE
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG 339 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~-~qG~t~Rw~ 339 (414)
...++.++++++.+.++++||+...+.... .+...++++|+ .+..... +.+.-.|.+
T Consensus 269 ---~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i 326 (329)
T TIGR01177 269 ---LESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI 326 (329)
T ss_pred ---hHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence 235788999999999999999887776443 44456888898 6655553 444434543
No 31
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.39 E-value=3.2e-12 Score=140.49 Aligned_cols=145 Identities=21% Similarity=0.153 Sum_probs=106.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~-~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|++++.++.. ...+|+++|+|+.|+++|++|++.|+ +. ++++++++|..+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~---------------- 600 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA---------------- 600 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence 468999999999999988863 23479999999999999999999996 76 689999987431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
++... .++||+|+||||||...+... .. ..
T Consensus 601 ------------------------------------~l~~~---~~~fDlIilDPP~f~~~~~~~----~~----~~--- 630 (702)
T PRK11783 601 ------------------------------------WLKEA---REQFDLIFIDPPTFSNSKRME----DS----FD--- 630 (702)
T ss_pred ------------------------------------HHHHc---CCCcCEEEECCCCCCCCCccc----hh----hh---
Confidence 12111 357999999999997532110 00 01
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCC
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG 333 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG 333 (414)
....+..++..+..+++++|.+.+... ..++....+.+.+.|+....+.+.-|+
T Consensus 631 ----~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 631 ----VQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence 345678888888889999998755544 566666688888888865555555555
No 32
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=7.1e-12 Score=124.35 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=101.8
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 015035 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (414)
Q Consensus 89 P~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~r 168 (414)
|+|.-.+.|+++++.. +.++||+|||||.++++.++ +-..+++|+||||.|++.|++|++.|+ +...
T Consensus 147 pTT~lcL~~Le~~~~~-----------g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~ 213 (300)
T COG2264 147 PTTSLCLEALEKLLKK-----------GKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNG-VELL 213 (300)
T ss_pred hhHHHHHHHHHHhhcC-----------CCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcC-Cchh
Confidence 6677778888877752 46899999999999987664 444579999999999999999999996 6531
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 015035 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (414)
Q Consensus 169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcN 248 (414)
+..-..+ .... ...++||+||||
T Consensus 214 ~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVAN 236 (300)
T COG2264 214 VQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVAN 236 (300)
T ss_pred hhccccc-------------------------------------------------------chhh--cccCcccEEEeh
Confidence 2110000 0111 124689999999
Q ss_pred CCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEE-EEeCCcCCHHHHHHHHHHcCCceEEE
Q 015035 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT 327 (414)
Q Consensus 249 PPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t-~mvgk~~~l~~l~~~l~~~g~~~v~~ 327 (414)
= . -..+.+|+.+...+++++|++. |=|= .++.+.+.+.+.+.|+..+.+
T Consensus 237 I-L----------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl-~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 237 I-L----------------------------AEVLVELAPDIKRLLKPGGRLILSGIL-EDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred h-h----------------------------HHHHHHHHHHHHHHcCCCceEEEEeeh-HhHHHHHHHHHHhCCCeEeEE
Confidence 6 1 1245678888888888888763 3333 567899999999999987766
Q ss_pred EEe
Q 015035 328 TEF 330 (414)
Q Consensus 328 ~e~ 330 (414)
.+.
T Consensus 287 ~~~ 289 (300)
T COG2264 287 LER 289 (300)
T ss_pred Eec
Confidence 653
No 33
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.38 E-value=5.1e-12 Score=130.35 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~-~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|.+++.++. ....+|+++|+|+.++++|++|++.|+ +. ++++++++|..+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~---------------- 282 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK---------------- 282 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence 46899999999999876554 234599999999999999999999996 76 589999988532
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
++.......++||+|++|||||..... ++.
T Consensus 283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~-------~l~------- 312 (396)
T PRK15128 283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKS-------QLM------- 312 (396)
T ss_pred ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChH-------HHH-------
Confidence 111111124589999999999975321 110
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEE-EEEeCCcCCHHHHHHHHHHc
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKV 320 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~-t~mvgk~~~l~~l~~~l~~~ 320 (414)
+...-+..++..+..+++++|++ ++-....-+.+.+.+.+.+.
T Consensus 313 ---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 313 ---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 02233777888888898888865 34444344556666655543
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.35 E-value=2.3e-11 Score=101.71 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=54.7
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.+|||||||+|.++..+++..++++++|+|+|+++++.|++|+...+ ..++|++++.|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence 58999999999999999998899999999999999999999997774 789999999875
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=3.9e-11 Score=110.60 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..+|||||||+|.+++.++...++.+++++|+++.+++.|++|++.++ +. +++++.++...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~----------------- 92 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI----------------- 92 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence 468999999999999999988888999999999999999999999885 64 68887765210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
.. .++||+|+++-..
T Consensus 93 --------------------------------------~~---~~~~D~v~~~~~~------------------------ 107 (187)
T PRK08287 93 --------------------------------------EL---PGKADAIFIGGSG------------------------ 107 (187)
T ss_pred --------------------------------------hc---CcCCCEEEECCCc------------------------
Confidence 00 2469999985310
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEec
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~ 331 (414)
..+..+++.+...++++|++....-...+...+.+.+++.|+..+.+.+..
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEE
Confidence 013456677777888888876544347889999999999999777765554
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=2.5e-11 Score=113.18 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.+|||||||+|.+++.++...++.+|+|+|+++++++.|++|++.++ +.+ ++++++|..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~----------------- 106 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE----------------- 106 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence 468999999999999999988888999999999999999999999996 755 9998887421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+ .. .++||+|+||- + .
T Consensus 107 ------------------------------------~---~~-~~~fDlV~~~~----------------~---~----- 122 (187)
T PRK00107 107 ------------------------------------F---GQ-EEKFDVVTSRA----------------V---A----- 122 (187)
T ss_pred ------------------------------------C---CC-CCCccEEEEcc----------------c---c-----
Confidence 0 01 35899999972 0 0
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEE
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT 327 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~ 327 (414)
-+..+++.+..+++++|.+.++.+ ......+.++.+..|...-++
T Consensus 123 ------~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 123 ------SLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeee
Confidence 134566777788999999888887 678888888888888753333
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=3.3e-11 Score=111.63 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=93.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.++||||||+|.+++.++...++.+|+|+|+|+.+++.|++|++.++ +. +|+++++|..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~----------------- 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED----------------- 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence 468999999999999998877788899999999999999999999885 64 59998887421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+ ...++||+|+||. +.
T Consensus 104 -----------------------------------~-----~~~~~fD~I~s~~-~~----------------------- 119 (181)
T TIGR00138 104 -----------------------------------F-----QHEEQFDVITSRA-LA----------------------- 119 (181)
T ss_pred -----------------------------------c-----cccCCccEEEehh-hh-----------------------
Confidence 1 0135899999985 10
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHH---cCCceEEEEEe
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEF 330 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~---~g~~~v~~~e~ 330 (414)
-+..+++....+++++|.+....| .....++....++ .|+..++.-++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecccc
Confidence 022344455667788888877777 6667777666655 68776666554
No 38
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=2e-11 Score=121.35 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=94.7
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 015035 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (414)
Q Consensus 89 P~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~r 168 (414)
|.|.-.+.+++++.. ...+|||+|||||.++++.++ +...+|+|+|+||.|++.|++|++.|+ ++++
T Consensus 146 ~TT~lcl~~l~~~~~-----------~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~ 212 (295)
T PF06325_consen 146 PTTRLCLELLEKYVK-----------PGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNG-VEDR 212 (295)
T ss_dssp HHHHHHHHHHHHHSS-----------TTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT--TTC
T ss_pred HHHHHHHHHHHHhcc-----------CCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcC-CCee
Confidence 334445555655532 235999999999999987655 333489999999999999999999996 8887
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 015035 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (414)
Q Consensus 169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcN 248 (414)
+.+.... +. ..++||+|++|
T Consensus 213 ~~v~~~~------------------------------------------------------~~------~~~~~dlvvAN 232 (295)
T PF06325_consen 213 IEVSLSE------------------------------------------------------DL------VEGKFDLVVAN 232 (295)
T ss_dssp EEESCTS------------------------------------------------------CT------CCS-EEEEEEE
T ss_pred EEEEEec------------------------------------------------------cc------ccccCCEEEEC
Confidence 7663110 00 13789999999
Q ss_pred CCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEE-EEEeCCcCCHHHHHHHHHHcCCceEEE
Q 015035 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKVGVTIVKT 327 (414)
Q Consensus 249 PPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~-t~mvgk~~~l~~l~~~l~~~g~~~v~~ 327 (414)
= -...+..|+.+...+++++|++ .|=+= .++...+++.+++ |+..+..
T Consensus 233 I-----------------------------~~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 233 I-----------------------------LADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp S------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEEE
T ss_pred C-----------------------------CHHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEEE
Confidence 6 1234567777777788877765 34343 5688999999977 9876665
Q ss_pred EE
Q 015035 328 TE 329 (414)
Q Consensus 328 ~e 329 (414)
.+
T Consensus 282 ~~ 283 (295)
T PF06325_consen 282 RE 283 (295)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 39
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.30 E-value=7e-11 Score=114.31 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=87.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.+|||+|||+|.+++.+++. ...+++|+|+|+.+++.|++|++.|+ +.+++.+...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--------------------- 176 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--------------------- 176 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC---------------------
Confidence 468999999999988776553 33369999999999999999999985 6444332111
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+.+||+|+||..
T Consensus 177 -------------------------------------------~~~fD~Vvani~------------------------- 188 (250)
T PRK00517 177 -------------------------------------------DLKADVIVANIL------------------------- 188 (250)
T ss_pred -------------------------------------------CCCcCEEEEcCc-------------------------
Confidence 126999999951
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEE
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE 329 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e 329 (414)
...+..++.+...+++++|++...--...+...+.+.+++.|+..+.+.+
T Consensus 189 ----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 ----ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred ----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 12356677888888888888754322256788999999999998766555
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=6.3e-11 Score=123.75 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=70.1
Q ss_pred hcCCcEEEecCCCeeCCCCC-cHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcH
Q 015035 71 HDHGLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 71 ~~fgl~~~vp~gvLiPriP~-R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
+++|+.|.+.++.+.-..+. .+..+.++.+++.. ....+|||+|||+|++++.|+... .+|+|+|+|+
T Consensus 261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~ 329 (443)
T PRK13168 261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVE 329 (443)
T ss_pred EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCH
Confidence 45688899999998754221 23333444444431 123589999999999999998754 6899999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 150 VALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 150 ~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.|++.|++|++.|+ +. +++++.+|.
T Consensus 330 ~al~~A~~n~~~~~-~~-~v~~~~~d~ 354 (443)
T PRK13168 330 AMVERARENARRNG-LD-NVTFYHANL 354 (443)
T ss_pred HHHHHHHHHHHHcC-CC-ceEEEEeCh
Confidence 99999999999996 64 699998875
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=8.1e-11 Score=109.77 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=102.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
..++||+|||+|.+++.++... +..+|+++|+++.+++.|++|++.++ +.+++.++..|..+
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~---------------- 103 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE---------------- 103 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh----------------
Confidence 4689999999999999888764 45799999999999999999999985 66788888776421
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
.+.. ..+.||.++++..
T Consensus 104 ------------------------------------~l~~---~~~~~D~V~~~~~------------------------ 120 (198)
T PRK00377 104 ------------------------------------ILFT---INEKFDRIFIGGG------------------------ 120 (198)
T ss_pred ------------------------------------hHhh---cCCCCCEEEECCC------------------------
Confidence 0111 1257899988631
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEE
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRW 338 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw 338 (414)
..-+..+++.+..+++++|.+.+..-...++..+...|+++|+ .+++++....+..++
T Consensus 121 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~ 178 (198)
T PRK00377 121 -----SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKT 178 (198)
T ss_pred -----cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccc
Confidence 0113556777777888888876666667788999999999998 677777765544333
No 42
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.26 E-value=1.6e-10 Score=114.33 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..+|||+|||+|.+++.+++ ....+|+|+|+|+.|++.|++|++.|+ +.+++.++..+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~------------------ 219 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLE------------------ 219 (288)
T ss_pred CCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccc------------------
Confidence 36899999999999977765 444589999999999999999999996 7777766654311
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
. ...++||+|+||...
T Consensus 220 -------------------------------------~---~~~~~fDlVvan~~~------------------------ 235 (288)
T TIGR00406 220 -------------------------------------Q---PIEGKADVIVANILA------------------------ 235 (288)
T ss_pred -------------------------------------c---ccCCCceEEEEecCH------------------------
Confidence 0 013589999999621
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEE-EeCCcCCHHHHHHHHHHcCCceEEEEE
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKTTE 329 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~-mvgk~~~l~~l~~~l~~~g~~~v~~~e 329 (414)
..+.+++.+...+++++|++.+ .+. .++...+.+.+++. +..+.+.+
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-CceeeEec
Confidence 1245667777778888887643 455 67888999999876 77665543
No 43
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.25 E-value=9.7e-11 Score=108.34 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCe---------eEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~---------vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~ 186 (414)
...+||..||||.|.+..+....+.. ++|+|+|+++++.|++|++..+ +.+.|.+.+.|..+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~-------- 99 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE-------- 99 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG--------
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh--------
Confidence 45899999999999988776666655 8999999999999999999996 88889998877431
Q ss_pred ccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCcccc
Q 015035 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC 266 (414)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~ 266 (414)
+. ...+.+|+|||||||-......
T Consensus 100 ---------------------------------------------l~---~~~~~~d~IvtnPPyG~r~~~~-------- 123 (179)
T PF01170_consen 100 ---------------------------------------------LP---LPDGSVDAIVTNPPYGRRLGSK-------- 123 (179)
T ss_dssp ---------------------------------------------GG---GTTSBSCEEEEE--STTSHCHH--------
T ss_pred ---------------------------------------------cc---cccCCCCEEEECcchhhhccCH--------
Confidence 11 1246899999999997543211
Q ss_pred CCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCc
Q 015035 267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (414)
Q Consensus 267 ~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~ 323 (414)
.+ ...|+.+++++..+.+.. |...++.....+.. .++..++.
T Consensus 124 ---~~-------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~---~~~~~~~~ 165 (179)
T PF01170_consen 124 ---KD-------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELEK---ALGLKGWR 165 (179)
T ss_dssp ---HH-------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHHH---HHTSTTSE
T ss_pred ---HH-------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHHH---Hhcchhhc
Confidence 11 357899999998886665 54455554555544 34444443
No 44
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.24 E-value=6.1e-11 Score=110.46 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=96.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..++||||||+|.+...++.+.|+.+|+|+|+++.+++.|++|+..++ +. +|+++++|...
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~----------------- 77 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE----------------- 77 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence 358999999999999999999999999999999999999999999885 64 79998887421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--cccccccccCCCccccCCCCCcc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPP--y~~s~ee~~~~P~~a~~g~~~Em 273 (414)
++.... +.+.||.+++|+| +.+. ...+ ..
T Consensus 78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~----~h~~--------~r- 108 (194)
T TIGR00091 78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKK----RHNK--------RR- 108 (194)
T ss_pred -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCC----Cccc--------cc-
Confidence 011111 2357999999975 3221 0001 10
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcC-CceE
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-VTIV 325 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g-~~~v 325 (414)
.....++++...+++++|++.+..........+.+.+.+.+ +..+
T Consensus 109 -------~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 109 -------ITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred -------cCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 11345667777888899988766654556777888888877 4433
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=1e-10 Score=109.80 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=96.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC-CCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN-SESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~-~~~~p~~~~~~~~~~~~~ 194 (414)
..+|||||||+|.+...|+...++.+++|+|+|+.+++.|++|++.++ + .++.+++.|. ..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~---------------- 102 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEV---------------- 102 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHH----------------
Confidence 468999999999999999988888899999999999999999999885 6 5688888764 10
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc--ccccccccCCCccccCCCCCc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEE 272 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy--~~s~ee~~~~P~~a~~g~~~E 272 (414)
+... ...+.||.|++|.|. ..... ...
T Consensus 103 -------------------------------------l~~~-~~~~~~D~V~~~~~~p~~~~~~------------~~~- 131 (202)
T PRK00121 103 -------------------------------------LLDM-FPDGSLDRIYLNFPDPWPKKRH------------HKR- 131 (202)
T ss_pred -------------------------------------HHHH-cCccccceEEEECCCCCCCccc------------ccc-
Confidence 1100 124579999998653 21100 000
Q ss_pred ccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCC
Q 015035 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV 322 (414)
Q Consensus 273 m~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~ 322 (414)
......++++...+++++|.+.+..-.......+.+.+++.|+
T Consensus 132 -------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 132 -------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred -------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 1123556677777888888887766667778899999999986
No 46
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.20 E-value=9.5e-11 Score=117.19 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=67.5
Q ss_pred CcEEEecCCCeeCCCCC-cHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~-R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
|++|.+.++.+....+. ...++..+.+++.. ..+.+|||+|||+|.+++.++. ++.+|+|+|+++.|+
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~---------~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av 208 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVRE---------LPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI 208 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHh---------cCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence 56778888888775431 12233334444432 1236899999999999999887 457999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 015035 153 EWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 153 ~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.|++|++.++ + ++++++++|.
T Consensus 209 ~~A~~n~~~~~-l-~~v~~~~~D~ 230 (315)
T PRK03522 209 ACAKQSAAELG-L-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHcC-C-CceEEEEcCH
Confidence 99999999996 7 5799998874
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=3.7e-10 Score=118.39 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=65.2
Q ss_pred hhhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 69 L~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
.+.|||++|.++++++ + +...+ + .+.. ....+|||||||+|+++..|+... +++++|+|+|
T Consensus 238 ~~~f~g~~~~v~~~v~-~----te~l~---~-~~~~---------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS 298 (475)
T PLN02336 238 YERVFGEGFVSTGGLE-T----TKEFV---D-KLDL---------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS 298 (475)
T ss_pred HHHHhCCCCCCCchHH-H----HHHHH---H-hcCC---------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence 3568999999999987 1 22222 2 2211 134689999999999999888755 7899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 149 ~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+++.|++|+.. +..+++++.+|.
T Consensus 299 ~~~l~~A~~~~~~---~~~~v~~~~~d~ 323 (475)
T PLN02336 299 VNMISFALERAIG---RKCSVEFEVADC 323 (475)
T ss_pred HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence 9999999999863 345789988875
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.18 E-value=3e-10 Score=101.05 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=53.0
Q ss_pred CCCeEEEECCcccHHHHHHHH-HhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~-~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
+..+|||+|||+|.+...|+. ..++.+++|+|+|+++++.|+++++.++ +. ++++++.|..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence 357999999999999999994 4678899999999999999999999986 76 8999998864
No 49
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3.9e-10 Score=117.80 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=102.2
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
..+|||+|||+|..++.++... ++.+|+|+|+++.+++.+++|+++++ +.+ |+++++|..+
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~---------------- 312 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK---------------- 312 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence 4689999999999999998876 56799999999999999999999996 754 8888887531
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
+...+ .++||+|++|||+..... ...+|......+...+.
T Consensus 313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~-~~~~p~~~~~~~~~~~~ 352 (444)
T PRK14902 313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGV-IRRKPDIKYNKTKEDIE 352 (444)
T ss_pred ------------------------------------ccchh---cccCCEEEEcCCCCCCee-eccCcchhhcCCHHHHH
Confidence 00001 257999999999864322 13455554433332110
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEEE---EEeCCcCCHHHHHHHHHHcC-CceE
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG-VTIV 325 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~t---~mvgk~~~l~~l~~~l~~~g-~~~v 325 (414)
.-......+++.+..+++++|.+. +-+...++...+...+++++ +..+
T Consensus 353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 011234668899999888888764 34554556666666777764 4433
No 50
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.17 E-value=1.5e-09 Score=102.64 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=51.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.++..++... ++.+++|+|+++.+++.|++|++.++ + ++++++..|.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~ 105 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNA 105 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEech
Confidence 4689999999999999888875 56799999999999999999998775 5 5788888874
No 51
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.12 E-value=3e-10 Score=116.34 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=65.5
Q ss_pred CcEEEecCCCeeCCCCCc-HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 74 GLNWWIPDGQLCPTVPNR-SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~R-~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
|+.|.++++.+.-..+.- +.+..++.+++.. ....++||+|||+|.+++.++. ++.+|+|+|+++.|+
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~---------~~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av 268 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVRE---------IPVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI 268 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHh---------cCCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence 556777777776653321 2222334444431 1225899999999999998885 457999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 015035 153 EWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 153 ~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.|++|++.|+ +. +++++..|.
T Consensus 269 ~~a~~N~~~~~-~~-~~~~~~~d~ 290 (374)
T TIGR02085 269 ACAQQSAQMLG-LD-NLSFAALDS 290 (374)
T ss_pred HHHHHHHHHcC-CC-cEEEEECCH
Confidence 99999999996 74 799988874
No 52
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=9.5e-10 Score=114.44 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=101.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
.+.+|||+|||+|..+..++...++.+|+|+|+++.+++.+++|+++++ +. ++++++|...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~---------------- 304 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD---------------- 304 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc----------------
Confidence 3468999999999999999987776899999999999999999999986 63 6777776431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
+... ...++||.|++|||+..+... ..+|..........+.
T Consensus 305 -------------------------------------~~~~-~~~~~fD~Vl~D~Pcs~~G~~-~~~p~~~~~~~~~~l~ 345 (427)
T PRK10901 305 -------------------------------------PAQW-WDGQPFDRILLDAPCSATGVI-RRHPDIKWLRRPEDIA 345 (427)
T ss_pred -------------------------------------chhh-cccCCCCEEEECCCCCccccc-ccCccccccCCHHHHH
Confidence 0000 123579999999999754221 2234433222221000
Q ss_pred ccCCh-HHHHHHHHHHHHHhhccCcEEE---EEeCCcCCHHHHHHHHHHcC
Q 015035 275 CSGGE-RAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 275 ~~GGe-~~Fv~rii~eS~~l~~~~~w~t---~mvgk~~~l~~l~~~l~~~g 321 (414)
. .....++++.+..+++++|.+. +.+...++...+...+++++
T Consensus 346 ----~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 346 ----ALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 1 1356788999999999888754 34556778888888888764
No 53
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.06 E-value=6.6e-10 Score=103.70 Aligned_cols=59 Identities=10% Similarity=-0.096 Sum_probs=51.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..++||++||||.+++.++.+.. .+|+++|+|+.|++.+++|++.++ +.+++++++.|.
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~ 108 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSA 108 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhH
Confidence 36899999999999998887543 389999999999999999999996 877899998874
No 54
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=9.2e-10 Score=100.08 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=47.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++||||||+|.++..++.+ +.+++|+|+|+.+++.+++|+... ++++++++|..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchh
Confidence 358999999999999998876 569999999999999999998543 36889888753
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.04 E-value=1.2e-08 Score=103.51 Aligned_cols=148 Identities=15% Similarity=-0.007 Sum_probs=97.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
..+|||||||+|.+...+++..++.+++++|+++.+++.|+++...+ +++++.+|..+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~----------------- 171 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAED----------------- 171 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHh-----------------
Confidence 46899999999999988888777789999999999999999986533 36677665321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+ + ..+++||+|+||..+....+
T Consensus 172 ------------------------------------l-p--~~~~sFDvVIs~~~L~~~~d------------------- 193 (340)
T PLN02490 172 ------------------------------------L-P--FPTDYADRYVSAGSIEYWPD------------------- 193 (340)
T ss_pred ------------------------------------C-C--CCCCceeEEEEcChhhhCCC-------------------
Confidence 0 0 02468999999876542111
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEe--C--------------CcCCHHHHHHHHHHcCCceEEEEEecCCCe----
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMV--G--------------RKSNLKFLISKLRKVGVTIVKTTEFVQGQT---- 335 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mv--g--------------k~~~l~~l~~~l~~~g~~~v~~~e~~qG~t---- 335 (414)
..+++++..++++++|.+.+.- . ...+.+++.+.|++.||+.+++. ++.+..
T Consensus 194 -------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~-~i~~~~~~~~ 265 (340)
T PLN02490 194 -------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK-RIGPKWYRGV 265 (340)
T ss_pred -------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE-EcChhhcccc
Confidence 0123444455555555543211 0 02357889999999999988764 444432
Q ss_pred eEEEEEEEeccccccc
Q 015035 336 CRWGLAWSFVPPARKI 351 (414)
Q Consensus 336 ~Rw~lAWsf~~~~~~~ 351 (414)
+|-.+.|+....++|.
T Consensus 266 ~~~~~~~~~~v~~~k~ 281 (340)
T PLN02490 266 RRHGLIMGCSVTGVKP 281 (340)
T ss_pred ccccceeeEEEEEecc
Confidence 2455666666555554
No 56
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=2.5e-09 Score=103.42 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+|||+|||+|.++..|+.. +.+|+|+|+|+++++.|+++++..+ +.+++++++++.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~ 102 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA 102 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence 468999999999999888874 6799999999999999999999885 777899988764
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.03 E-value=8.5e-09 Score=86.97 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=50.6
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
.++||+|||+|..+..++.+.++.+++|+|+++.+++.|++|++.++ +. +++++..|
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~ 77 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD 77 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence 58999999999999999988888899999999999999999999885 54 57777765
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=99.02 E-value=1.6e-08 Score=102.39 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|.++..|+.++ +.+|+|+|+|+.+++.|+++++.++ +.++|+++.+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADA 177 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCc
Confidence 34689999999999999888765 7899999999999999999999885 777899998875
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.02 E-value=1.1e-08 Score=103.12 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=67.1
Q ss_pred EEEecCCCeeC---CCCCcHhHHHHH-HHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 76 NWWIPDGQLCP---TVPNRSNYIHWI-EDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 76 ~~~vp~gvLiP---riP~R~~yi~~i-~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
.||-+.|-+-| ..|.|..|+..+ ...+...... .....+.+|||||||+|.++..|+. .+.+|+|+|+++++
T Consensus 90 ~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~--~~~~~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~ 165 (322)
T PLN02396 90 TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSS--AKPFEGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKN 165 (322)
T ss_pred HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhh--ccCCCCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHH
Confidence 57777776555 456677777433 2233221000 0012346899999999999888875 57899999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 152 LEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 152 l~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
++.|+++++.++ +..+|++++++.
T Consensus 166 i~~Ar~~~~~~~-~~~~i~~~~~da 189 (322)
T PLN02396 166 VKIARLHADMDP-VTSTIEYLCTTA 189 (322)
T ss_pred HHHHHHHHHhcC-cccceeEEecCH
Confidence 999999987764 556788888763
No 60
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.00 E-value=5.5e-09 Score=108.62 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=65.6
Q ss_pred CcEEEecCCCeeCCCCCc-HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 74 GLNWWIPDGQLCPTVPNR-SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~R-~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
|+.|.+.++.+....+.. ..++.++.+.+.. ....+|||+|||+|.+++.|+... .+|+|+|+++.|+
T Consensus 259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av 327 (431)
T TIGR00479 259 DLSFSLSARDFFQVNSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESV 327 (431)
T ss_pred CEEEEECCCceeecCHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHH
Confidence 566777778777653321 1222333333321 123589999999999999998753 4899999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 015035 153 EWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 153 ~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.|++|++.|+ + ++++++.+|.
T Consensus 328 ~~a~~n~~~~~-~-~nv~~~~~d~ 349 (431)
T TIGR00479 328 EKAQQNAELNG-I-ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHhC-C-CceEEEeCCH
Confidence 99999999996 6 4799998874
No 61
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.99 E-value=7.5e-09 Score=107.68 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=100.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.+|||+|||+|..+..++...++.+++|+|+++.+++.+++|+++++ +..++.+..+|..+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~----------------- 300 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG----------------- 300 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence 468999999999999999987777799999999999999999999986 65333334443210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
... ....++||.|+++||+..+..- ...|......+..++.
T Consensus 301 ------------------------------------~~~-~~~~~~fD~VllDaPcSg~G~~-~~~p~~~~~~~~~~~~- 341 (426)
T TIGR00563 301 ------------------------------------PSQ-WAENEQFDRILLDAPCSATGVI-RRHPDIKWLRKPRDIA- 341 (426)
T ss_pred ------------------------------------ccc-cccccccCEEEEcCCCCCCccc-ccCcchhhcCCHHHHH-
Confidence 000 0124679999999998764321 2345443333332110
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEE---EEeCCcCCHHHHHHHHHHcC
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t---~mvgk~~~l~~l~~~l~~~g 321 (414)
.-...-.+|++++..+++++|.+. +-+...++-..+...|++++
T Consensus 342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 012245678899988888888763 44555678888888888764
No 62
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=2.9e-09 Score=103.71 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||+|.++..|+.+ ..+++|+|+|+.+++.+++++... ++++++++|..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~ 85 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDAL 85 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccc
Confidence 468999999999999999876 458999999999999999988542 46899988753
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.97 E-value=2.6e-08 Score=96.89 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=49.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|...+.++... +..+|+|+|+++.+++.|++|++.++ + ++++++.+|.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~ 137 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEI 137 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcch
Confidence 34699999999998877766654 45689999999999999999998875 5 4788877764
No 64
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.97 E-value=5.7e-08 Score=94.81 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHH--CCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKS--NPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~--n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.++..|+... +..+|+|+|+|+++++.|+++... .. ...+|+++++|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEccc
Confidence 4689999999999998888764 467999999999999999887542 21 335788888874
No 65
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.97 E-value=7.6e-09 Score=101.15 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=93.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|..++.++.... ...|+|+|+++.+++.+++|+++++ +. +|.+++.|...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~---------------- 133 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV---------------- 133 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence 46899999999999999988764 3589999999999999999999996 64 58887776321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
+. ...+.||.|++|||+....-- ..+|.....-+...+.
T Consensus 134 -------------------------------------~~---~~~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~~ 172 (264)
T TIGR00446 134 -------------------------------------FG---AAVPKFDAILLDAPCSGEGVI-RKDPSRKKNWSEEDIQ 172 (264)
T ss_pred -------------------------------------hh---hhccCCCEEEEcCCCCCCccc-ccChhhhhcCCHHHHH
Confidence 00 012459999999998743211 2344432221111000
Q ss_pred ccCChH-HHHHHHHHHHHHhhccCcEEE---EEeCCcCCHHHHHHHHHHcC
Q 015035 275 CSGGER-AFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 275 ~~GGe~-~Fv~rii~eS~~l~~~~~w~t---~mvgk~~~l~~l~~~l~~~g 321 (414)
.+ ..-..|++.+..+++++|++. +-+...++-.-+...|+++.
T Consensus 173 ----~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 173 ----EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRP 219 (264)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCC
Confidence 11 234568899999888888653 33443444445555566543
No 66
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.96 E-value=9.9e-09 Score=95.77 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
+.+|||+|||+|.++..|+. .+++|+|+|+|+.+++.|+++++.++ +. +.+...|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence 46899999999999999886 36899999999999999999998875 53 5555554
No 67
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.96 E-value=8.5e-09 Score=99.56 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCeEEEECCcccHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~--~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.....++.. .++++++|+|+|+.+++.|+++++.++ +..+++++++|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~ 118 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI 118 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence 468999999999998888763 478999999999999999999999885 667899988764
No 68
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=2.5e-08 Score=97.63 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred eCCCCCcH--hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 85 CPTVPNRS--NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 85 iPriP~R~--~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
...-|.++ .|..++...+... ..+.+|||||||+|.++..+++..|+.+++++|+|+++++.|+++...+
T Consensus 42 ~~~~P~~l~~~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~ 113 (262)
T PRK04457 42 RIDDPSELELAYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP 113 (262)
T ss_pred ecCCcccccCHHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC
Confidence 33335443 4666664433321 2346899999999999999998889999999999999999999998765
Q ss_pred CCCCCcEEEEEccC
Q 015035 163 PHISELIEIRKVDN 176 (414)
Q Consensus 163 ~~l~~rI~~~~~d~ 176 (414)
+ ..++++++.+|.
T Consensus 114 ~-~~~rv~v~~~Da 126 (262)
T PRK04457 114 E-NGERFEVIEADG 126 (262)
T ss_pred C-CCCceEEEECCH
Confidence 3 457899998874
No 69
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=3.2e-08 Score=91.97 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.+++.++...++.+|+|+|+|+++++.|++|++.++ + ++++++.+|.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d~ 99 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGSA 99 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECch
Confidence 468999999999999988877778899999999999999999999885 6 4688887763
No 70
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.95 E-value=3.7e-09 Score=105.27 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=50.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.+...|+.. ..+++|+|+|+++++.+++++..++ +.++++++++|.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Da 94 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDA 94 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCH
Confidence 458999999999999888764 4589999999999999999998774 567899999885
No 71
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.94 E-value=3.3e-09 Score=104.06 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||+|.++..|+.+.+ +++|+|+|+++++.+++|+.. ++++++++|..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~ 97 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL 97 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence 35899999999999999988743 899999999999999987642 46899998853
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=5.9e-08 Score=91.26 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=52.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.++..++.... +.+|+|+|+++++++.|++|++.++ +.++++++.+|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~ 133 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG 133 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence 46899999999999988887654 4699999999999999999999885 767799988874
No 73
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.93 E-value=2.2e-08 Score=96.75 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|.++..|+.+.|+.+|+|+|+|+.+++.|+++ + ++++++|.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~ 81 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-----VDARTGDV 81 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-----CcEEEcCh
Confidence 34689999999999999999888889999999999999999652 2 55666653
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.92 E-value=2.7e-08 Score=94.23 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=98.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
..+|||||||+|.+...++++.. ..+|+|+|+++. ++ + ..+.++++|..+...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~-~~v~~i~~D~~~~~~------------- 105 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-I-VGVDFLQGDFRDELV------------- 105 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-C-CCcEEEecCCCChHH-------------
Confidence 35899999999999988888753 469999999981 22 2 237888887532000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC-CcccccccccCCCccccCCCCCcc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNP-Py~~s~ee~~~~P~~a~~g~~~Em 273 (414)
+ +.+.... ..++||+|+||+ |++... |.. +.
T Consensus 106 ----------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~------~~~-----d~-- 137 (209)
T PRK11188 106 ----------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGT------PAV-----DI-- 137 (209)
T ss_pred ----------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCC------hHH-----HH--
Confidence 0 0001111 246899999998 666321 100 00
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCe---eEEEEEEEe
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t---~Rw~lAWsf 344 (414)
. .-..+...+++++..+++++|+|.+-+-....+.++...+++ .+..++++++.+++. ..++++-.|
T Consensus 138 ~---~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~ 207 (209)
T PRK11188 138 P---RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR 207 (209)
T ss_pred H---HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence 0 012235678889999999999987756657788888776655 588899999999985 344444433
No 75
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.91 E-value=1.4e-08 Score=111.95 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCeEEEECCcccHHHHHHHHHh----c--------------------------------------CCeeEEecCcHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASL----L--------------------------------------GWSFVGSDMTDVALE 153 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~----~--------------------------------------~~~vvgvDis~~Al~ 153 (414)
...++|.+||||.|.+..|... | ..+++|+|+|+.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 4689999999999988765421 1 136999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCC
Q 015035 154 WAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 154 ~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.|++|++.++ +.++|.+++.|..
T Consensus 271 ~A~~N~~~~g-~~~~i~~~~~D~~ 293 (702)
T PRK11783 271 AARKNARRAG-VAELITFEVKDVA 293 (702)
T ss_pred HHHHHHHHcC-CCcceEEEeCChh
Confidence 9999999996 8889999998854
No 76
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.90 E-value=1e-08 Score=98.90 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.+.+|||+|||+|.++..|+... ++.+|+|+|+|+.+|+.|++.++..+ .. +|+++++|.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da 107 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA 107 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence 34699999999999999888764 46799999999999999999999875 43 899999875
No 77
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.4e-08 Score=106.09 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|..+..++... ++.+|+|+|+++.+++.+++|+++.+ +. .|++++.|...
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~---------------- 299 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER---------------- 299 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence 4689999999999999988865 35799999999999999999999986 64 48888877421
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
+... ..++||.|+|+||+...... ..+|..-...+...+
T Consensus 300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~- 338 (431)
T PRK14903 300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF- 338 (431)
T ss_pred -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence 0000 13579999999999754321 223433222111100
Q ss_pred ccCChH-HHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 275 CSGGER-AFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 275 ~~GGe~-~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
.++ .+-.+|++.+..+++++|.+ |+-+...++-..|...|+++.
T Consensus 339 ---~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 339 ---KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386 (431)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence 012 35688999999998888865 445555667777777787654
No 78
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.89 E-value=2.9e-09 Score=102.38 Aligned_cols=77 Identities=27% Similarity=0.491 Sum_probs=58.7
Q ss_pred EEEecCCCeeC---CCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 76 NWWIPDGQLCP---TVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 76 ~~~vp~gvLiP---riP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
.|+-+++.+-| .+|.|++|+.-....-. +..+.+|||+|||-|.++..||. .+++|+|+|++++++
T Consensus 26 ~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I 94 (243)
T COG2227 26 RWWDPEGEFKPLHKINPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPI 94 (243)
T ss_pred hhcCCCCceeeeeeeccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHH
Confidence 35556666555 46889988853321100 02457999999999999999986 458999999999999
Q ss_pred HHHHHHHHHCC
Q 015035 153 EWAEKNVKSNP 163 (414)
Q Consensus 153 ~~A~~N~~~n~ 163 (414)
+.|+..+..++
T Consensus 95 ~~Ak~ha~e~g 105 (243)
T COG2227 95 EVAKLHALESG 105 (243)
T ss_pred HHHHHhhhhcc
Confidence 99999999986
No 79
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.89 E-value=5.9e-08 Score=92.81 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||+|.....++... |+++++|+|+|+.+++.|+++++..+ ...+++++++|..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~ 116 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIR 116 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChh
Confidence 4589999999999998888764 68999999999999999999998764 5567899888753
No 80
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=3e-08 Score=103.48 Aligned_cols=147 Identities=14% Similarity=0.046 Sum_probs=100.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. .|++++.|..+. +
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~-~------------- 316 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNL-L------------- 316 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhc-c-------------
Confidence 46899999999999999988754 4699999999999999999999996 75 488888874310 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
..+ . ...++||.|+++||...+. ...++|.....-+...+.
T Consensus 317 -----------------------------------~~~-~--~~~~~fD~Vl~DaPCSg~G-~~~r~p~~~~~~~~~~~~ 357 (434)
T PRK14901 317 -----------------------------------ELK-P--QWRGYFDRILLDAPCSGLG-TLHRHPDARWRQTPEKIQ 357 (434)
T ss_pred -----------------------------------ccc-c--cccccCCEEEEeCCCCccc-ccccCcchhhhCCHHHHH
Confidence 000 0 0135799999999975321 112334332221111000
Q ss_pred ccCCh-HHHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 275 ~~GGe-~~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
+ ...-.+|++.+..+++++|.+ |+.+...++...+...|++++
T Consensus 358 ----~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 358 ----ELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 1 123467889988888888754 356777788888888998874
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.87 E-value=4.4e-08 Score=92.26 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=53.0
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+|||||||+|..+..++..+++.+++|+|+|+.+++.|+++++..+ +.++++++..|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence 6999999999999989888888899999999999999999999885 888999988774
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.86 E-value=8.2e-08 Score=94.78 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=47.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+|||||||+|..++.|+. .+.+|+|+|+|+.|++.|+++++.++ + .+++...|.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~ 176 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDI 176 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEech
Confidence 35899999999999988886 46899999999999999999999885 6 577766653
No 83
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.85 E-value=1e-08 Score=95.35 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCcEEEecCC-CeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 73 HGLNWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 73 fgl~~~vp~g-vLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
=|..+..|++ .+=|+ ++| .=+-+-++|.... -...++||+.+|||++++..+.+. ..+|+.||.|+.+
T Consensus 9 kgr~l~~p~~~~~RPT-~dr--vrealFniL~~~~-------~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a 77 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPT-TDR--VREALFNILQPRN-------LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKA 77 (183)
T ss_dssp TT-EEE-TT--TS-SS-SHH--HHHHHHHHHHCH--------HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHH
T ss_pred CCCEecCCCCCCcCCC-cHH--HHHHHHHHhcccc-------cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHH
Confidence 3667777875 35554 332 1122333333210 134689999999999998766543 3489999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 152 LEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 152 l~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
++..++|++..+ +.+++.++..|.
T Consensus 78 ~~~i~~N~~~l~-~~~~~~v~~~d~ 101 (183)
T PF03602_consen 78 IKIIKKNLEKLG-LEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHT--GGGEEEEESSH
T ss_pred HHHHHHHHHHhC-CCcceeeeccCH
Confidence 999999999986 888899988873
No 84
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.84 E-value=3.6e-08 Score=92.16 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=48.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+|||+|||+|..+..|+++ +++|+|+|+|+.+++.|+++++.++ +. .++++..|.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d~ 87 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVDL 87 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecCh
Confidence 468999999999999988874 6899999999999999999998875 53 477766654
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.84 E-value=8.2e-08 Score=98.87 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+||||||+|...+.+|.+.|++.++|+|+++.+++.|.+++..++ +. +|.++++|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA 181 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA 181 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence 358999999999999999999999999999999999999999999986 74 599998874
No 86
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=3.6e-08 Score=103.21 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=97.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
+.+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. +|+++..|...
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~---------------- 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS---------------- 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence 46899999999999988887654 4699999999999999999999986 64 68888776421
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
+. ..++||.|+++||+..+..- ..+|......+.. .+
T Consensus 313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~~-~r~p~~~~~~~~~-~~ 349 (445)
T PRK14904 313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGVL-GRRAELRWKLTPE-KL 349 (445)
T ss_pred ------------------------------------cc-----cCCCCCEEEEcCCCCCcchh-hcCcchhhcCCHH-HH
Confidence 00 13579999999998654321 2344433222221 00
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
.. =...-.+|+..+..+++++|.+ |+-+...++-..+...|+++.
T Consensus 350 ~~--l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 350 AE--LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 00 0124456888998888888875 334444556666677777764
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.83 E-value=8.7e-08 Score=88.48 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=97.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
...+|||||||+|.+...++.+. +..+++|+|+++.+ . . ..+.+++.|..+..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~------------- 85 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEE------------- 85 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChh-------------
Confidence 34689999999999998888776 45689999999854 1 1 23677776643200
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC--CcccccccccCCCccccCCCCC
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPE 271 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNP--Py~~s~ee~~~~P~~a~~g~~~ 271 (414)
..+ .+.... ..++||+|+||+ ||... +. .+
T Consensus 86 --------------------------~~~-------~l~~~~--~~~~~D~V~~~~~~~~~g~-------~~------~~ 117 (188)
T TIGR00438 86 --------------------------VLN-------KIRERV--GDDKVDVVMSDAAPNISGY-------WD------ID 117 (188)
T ss_pred --------------------------HHH-------HHHHHh--CCCCccEEEcCCCCCCCCC-------cc------cc
Confidence 000 000001 245799999995 33110 00 00
Q ss_pred cccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCe---eEEEEEEE
Q 015035 272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWS 343 (414)
Q Consensus 272 Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t---~Rw~lAWs 343 (414)
.+. .......++..+..+++++|.+..++....++..+...|++. +..+.+.++..|+. .+++++-.
T Consensus 118 ~~~----~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 118 HLR----SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred HHH----HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEec
Confidence 000 123356777888888888988877777778888999988885 78899999999874 45555543
No 88
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.83 E-value=1.9e-07 Score=91.20 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|..+..|+.. .+.+|+|+|+++.+++.|+++.... ++|.++..|.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~ 108 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDI 108 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCc
Confidence 3468999999999998888764 4679999999999999999886532 4688887764
No 89
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.82 E-value=1.3e-08 Score=104.03 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=49.5
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.++||++||+|.+++.|+... .+|+|+|+++.|++.|++|++.|+ +. +++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEEEEECCH
Confidence 469999999999999888753 389999999999999999999996 74 799998875
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.82 E-value=2.1e-07 Score=87.39 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=51.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|..+..++...+ ..+++++|+++.+++.|++++..++ +..++.++..|.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence 36899999999999998888776 6899999999999999999998764 666788887764
No 91
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.2e-09 Score=93.82 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=46.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++.+++|||||+|.+.+ +..++ +-.|+|+||||+||+.+.+|++... + .|.+++.+..
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE-v--qidlLqcdil 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFE-V--QIDLLQCDIL 106 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhh-h--hhheeeeecc
Confidence 45789999999999884 44455 4579999999999999999998763 4 4688888754
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.81 E-value=4.2e-08 Score=92.68 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|.++..|+.... ..+|+|+|+++.+++.|++|++.++ + ++++++.+|.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~ 137 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG 137 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence 346999999999999998888654 4579999999999999999999986 6 5788888774
No 93
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.80 E-value=3.1e-08 Score=99.59 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=58.0
Q ss_pred CCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 73 fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
||....+....+.++ +++...+..+.+++.... ...+.+|||||||+|.+++.|+.. +.+|+|+|+|+.++
T Consensus 109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml 179 (315)
T PLN02585 109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV 179 (315)
T ss_pred cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence 444455666678877 444444554555554210 013469999999999999988864 67999999999999
Q ss_pred HHHHHHHHHC
Q 015035 153 EWAEKNVKSN 162 (414)
Q Consensus 153 ~~A~~N~~~n 162 (414)
+.|++|++..
T Consensus 180 ~~A~~~~~~~ 189 (315)
T PLN02585 180 AEAERRAKEA 189 (315)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 94
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.79 E-value=1.3e-08 Score=97.87 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=54.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||+|..++.++...+ +.+++++|+++++++.|++|++.++ +.++|+++.+|..
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~ 130 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDAL 130 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHH
Confidence 46899999999998888887655 5799999999999999999999996 8899999998753
No 95
>PRK06922 hypothetical protein; Provisional
Probab=98.78 E-value=7.6e-08 Score=104.30 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=83.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (414)
+.+|||||||+|..+..++...|+.+++|+|+|+.+++.|++++..++ .++.++++|..+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~d----------------- 478 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAIN----------------- 478 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHh-----------------
Confidence 468999999999999889988899999999999999999999986553 357777776421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccc
Q 015035 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (414)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~ 275 (414)
+.... .+++||+|+||+++..-.. +-| ..+...
T Consensus 479 ------------------------------------Lp~~f-edeSFDvVVsn~vLH~L~s---yIp---~~g~~f---- 511 (677)
T PRK06922 479 ------------------------------------LSSSF-EKESVDTIVYSSILHELFS---YIE---YEGKKF---- 511 (677)
T ss_pred ------------------------------------Ccccc-CCCCEEEEEEchHHHhhhh---hcc---cccccc----
Confidence 00001 2468999999998753110 001 011111
Q ss_pred cCChHHHHHHHHHHHHHhhccCcEEEEEeC
Q 015035 276 SGGERAFITRIIEDSVALKQTFRWYTSMVG 305 (414)
Q Consensus 276 ~GGe~~Fv~rii~eS~~l~~~~~w~t~mvg 305 (414)
...-+.+++++....++++|++...-+
T Consensus 512 ---~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 512 ---NHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ---cHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 123566777888888899998866544
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.76 E-value=1.7e-07 Score=73.99 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=45.2
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+++|+|||+|.+...++. .+..+++++|+++.+++.++++...+ ...+++++..|.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence 489999999999888776 56789999999999999999755443 345688887764
No 97
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.75 E-value=2.2e-08 Score=83.04 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=44.9
Q ss_pred EEEECCcccHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~~~---~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
|||+|||+|.....++..+ +..+++|+|+|+++++.|+++....+ . +++++++|..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHh
Confidence 7999999999999888775 44899999999999999999998764 4 6889888853
No 98
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.74 E-value=5e-08 Score=104.00 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=45.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhc--------CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~--------~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
...+|||.|||+|++.+.++.+.+ ...++|+|||+.++..|+.|+...+. ..+.+.+.|
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d 97 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFN 97 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecc
Confidence 346899999999999988877654 25789999999999999999987641 224555444
No 99
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.74 E-value=3.7e-08 Score=100.40 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=49.5
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.++||+|||+|.+++.|+... .+|+|+|+++.|++.|++|++.|+ +. +++++.+|.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-~~-~v~~~~~d~ 254 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-ID-NVQIIRMSA 254 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEEcCH
Confidence 369999999999999888764 389999999999999999999996 74 599998874
No 100
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.74 E-value=6.6e-08 Score=91.27 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~ 159 (414)
..+|||||||+|.+...|+...++.+++|+|+|+.+++.|+++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 45899999999999998888777889999999999999998874
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.73 E-value=4e-07 Score=84.84 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+..+++|||||||.|++.++...|..+++|+|-++++++..++|+++.+ + ++++++.++.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~A 93 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDA 93 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccc
Confidence 3468999999999999999977889999999999999999999999996 4 6799988863
No 102
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.72 E-value=1.4e-07 Score=93.62 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCCeEEEECCcccHHHHHHHHH-------hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~-------~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~r-I~~~~~d~ 176 (414)
...+|+|.+||+|.+.+.+... ....+++|+|+++.++.+|+.|+..++ .... +.+...|.
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGDS 114 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-T
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-ccccccccccccc
Confidence 3458999999999988776653 367799999999999999999998774 4332 45666653
No 103
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.5e-07 Score=96.23 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=50.8
Q ss_pred CeEEEECCcccHHHHHHHHHhcC--------------------------------C-------eeEEecCcHHHHHHHHH
Q 015035 117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK 157 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~--------------------------------~-------~vvgvDis~~Al~~A~~ 157 (414)
..++|-=||||.|.+-.|...++ + .++|+|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999999876654431 1 37899999999999999
Q ss_pred HHHHCCCCCCcEEEEEccCC
Q 015035 158 NVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 158 N~~~n~~l~~rI~~~~~d~~ 177 (414)
|++..+ +.+.|++.+.|..
T Consensus 273 NA~~AG-v~d~I~f~~~d~~ 291 (381)
T COG0116 273 NARAAG-VGDLIEFKQADAT 291 (381)
T ss_pred HHHhcC-CCceEEEEEcchh
Confidence 999996 9999999999854
No 104
>PRK00811 spermidine synthase; Provisional
Probab=98.71 E-value=9.5e-07 Score=87.42 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=49.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC--CCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI--SELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~-~l--~~rI~~~~~d~ 176 (414)
.+.+|||||||+|.++..+++.....+|+++|+|+.+++.|+++....+ +. ..+++++.+|.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da 140 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG 140 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch
Confidence 3568999999999999888764345689999999999999999886421 11 35788988874
No 105
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.70 E-value=4.2e-07 Score=90.23 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=54.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++||||||+|.+++.+++++|+.+++++|+ +.+++.|++|++..+ +.++|+++.+|..
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence 46999999999999999999999999999998 789999999999986 8889999998853
No 106
>PRK08317 hypothetical protein; Provisional
Probab=98.70 E-value=8.3e-07 Score=82.86 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=48.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||+|||+|.+...++... +..+++|+|+++.+++.|+++... ...++.++..|.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~ 78 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDA 78 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEeccc
Confidence 34689999999999999888876 677999999999999999998432 234678877663
No 107
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.69 E-value=3.7e-07 Score=83.67 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=83.0
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (414)
.|+|++||.|.-.+.+|+.+ .+|+|+|+|+.-+++|+.|++-.+ +.++|+++++|..+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~------------------- 59 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE------------------- 59 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence 58999999999999999864 489999999999999999999996 89999999998532
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccC
Q 015035 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (414)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~G 277 (414)
++... +....||+|++.||+--..-.. .+...+. +...|-
T Consensus 60 ---------------------------------~~~~~-~~~~~~D~vFlSPPWGGp~Y~~--~~~fdL~----~~~~p~ 99 (163)
T PF09445_consen 60 ---------------------------------LLKRL-KSNKIFDVVFLSPPWGGPSYSK--KDVFDLE----KSMQPF 99 (163)
T ss_dssp ---------------------------------HGGGB-------SEEEE---BSSGGGGG--SSSB-TT----TSSSS-
T ss_pred ---------------------------------HHhhc-cccccccEEEECCCCCCccccc--cCccCHH----HccCCC
Confidence 11111 1112289999999996422111 0111110 011121
Q ss_pred ChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcC--CceEEEEEe-cCCC
Q 015035 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEF-VQGQ 334 (414)
Q Consensus 278 Ge~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g--~~~v~~~e~-~qG~ 334 (414)
+ +..|++.+..+-..+. ..+.|.+++.+|.+..++.. -..+++.+- +.|+
T Consensus 100 ~----~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~ 152 (163)
T PF09445_consen 100 N----LEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGK 152 (163)
T ss_dssp -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTE
T ss_pred C----HHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCe
Confidence 1 3455555555544444 45899999999988876543 233555443 3444
No 108
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.69 E-value=1.2e-07 Score=91.50 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||||||+|.++..++...++.+|+|+|+|+.+++.|+++.. ++.++.+|.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d~ 85 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEADI 85 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECch
Confidence 3468999999999999999988888899999999999999988742 356766653
No 109
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.68 E-value=3.7e-07 Score=87.74 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~ 159 (414)
..+|||||||+|.++..++. .+.+++|+|+|+.+++.|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence 46899999999998877765 4679999999999999998874
No 110
>PRK03612 spermidine synthase; Provisional
Probab=98.67 E-value=9.8e-08 Score=101.98 Aligned_cols=135 Identities=12% Similarity=0.044 Sum_probs=89.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHH---CC-CCC-CcEEEEEccCCCCCCccccccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKS---NP-HIS-ELIEIRKVDNSESTPSIQESLT 188 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~---n~-~l~-~rI~~~~~d~~~~~p~~~~~~~ 188 (414)
++.+|||||||+|.+...+++ .+. .+++++|||+++++.|++|... |+ .++ .+++++..|..+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~---------- 365 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN---------- 365 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence 356899999999999988776 454 6999999999999999996421 10 122 478888877431
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCC
Q 015035 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG 268 (414)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g 268 (414)
.+. ...++||+|++|+|.-.. |.
T Consensus 366 ------------------------------------------~l~---~~~~~fDvIi~D~~~~~~-------~~----- 388 (521)
T PRK03612 366 ------------------------------------------WLR---KLAEKFDVIIVDLPDPSN-------PA----- 388 (521)
T ss_pred ------------------------------------------HHH---hCCCCCCEEEEeCCCCCC-------cc-----
Confidence 111 124689999999875321 10
Q ss_pred CCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeC----CcCCHHHHHHHHHHcCCceEEE
Q 015035 269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKT 327 (414)
Q Consensus 269 ~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvg----k~~~l~~l~~~l~~~g~~~v~~ 327 (414)
.. .-+-..+++...+.++++|.+.+..+ ....+..+.+.+++.|+ .+..
T Consensus 389 -~~--------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~ 441 (521)
T PRK03612 389 -LG--------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTP 441 (521)
T ss_pred -hh--------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEE
Confidence 00 01123344455667888888765332 34456778889999998 4444
No 111
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.67 E-value=1e-07 Score=98.31 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCC-CCcEEEEEccCCCCCCcccccccCCccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~~~n~~l-~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
+.+|||+.|=||..++..|. .++ +||+||+|..||++|++|++.|+ + .+++.+++.|..+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg-~~~~~~~~i~~Dvf~--------------- 279 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNG-LDGDRHRFIVGDVFK--------------- 279 (393)
T ss_pred CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcC-CCccceeeehhhHHH---------------
Confidence 56899999999999876653 566 99999999999999999999997 6 4678999988542
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
++......+++||+|+..||=|...... .+.
T Consensus 280 -------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~------~~~------ 310 (393)
T COG1092 280 -------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQ------EFS------ 310 (393)
T ss_pred -------------------------------------HHHHHHhcCCcccEEEECCcccccCccc------chh------
Confidence 2333334467999999999988643221 111
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEE-EEEeCCcCCHHHHHHHHHH
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRK 319 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~-t~mvgk~~~l~~l~~~l~~ 319 (414)
...-+.+|+..+.+++.++|.+ ++-....-..+.+++.+.+
T Consensus 311 -----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 311 -----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 3456888999999998888764 4444433345554444443
No 112
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.65 E-value=9.4e-08 Score=92.55 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=53.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.+.+|||+|||||-+++.+++..+..+|+|+|+|+.+|+.|++-+..-+ ..+ |+++++|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dA 110 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDA 110 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEech
Confidence 4579999999999999999998888899999999999999999998764 555 99999985
No 113
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.61 E-value=2.2e-07 Score=87.60 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..++||||||+|.++..++.. +.+++|+|+|+++++.|++++..++ ..+++.+...|.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence 468999999999999888763 5699999999999999999998774 556788887764
No 114
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.60 E-value=1.3e-06 Score=82.27 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=48.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
..+|||||||+|.++..|+.. +.+++|+|+|+.+++.|+++....+ +.++|.+...|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d 120 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD 120 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence 468999999999999888764 4579999999999999999998775 65678888765
No 115
>PRK04266 fibrillarin; Provisional
Probab=98.60 E-value=1.6e-06 Score=83.23 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=47.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++.. .+|.++.+|.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~ 129 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA 129 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence 46899999999999999988766568999999999999888887643 2477777764
No 116
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.59 E-value=3.7e-07 Score=90.66 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=87.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~-~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
..+|||+.|=||..++..+. .+ .+|+.||+|..|+++|++|++.|+ +. ++++++..|...
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~--------------- 185 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK--------------- 185 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred CCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence 46999999999999876553 44 479999999999999999999996 75 689999887431
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
.+..+ +..++||+||+.||=|.... ..
T Consensus 186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~-------------~~-- 212 (286)
T PF10672_consen 186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK-------------FD-- 212 (286)
T ss_dssp -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST-------------CE--
T ss_pred -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH-------------HH--
Confidence 12221 23468999999999884210 11
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEE-EEEeCCcCCHHHHHHHHHHcCC
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKVGV 322 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~-t~mvgk~~~l~~l~~~l~~~g~ 322 (414)
-..-+.+++..+..+++++|.+ ++-....-..+.+++.+++.+-
T Consensus 213 -----~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 213 -----LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp -----HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 1124778889999999998864 4555544456777777777653
No 117
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.58 E-value=3.8e-06 Score=78.00 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||+|||+|.+...++...+. .+++++|+++.+++.++++.. ...++.++.+|.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~ 97 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA 97 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence 3468999999999999888887765 799999999999999999875 224678877764
No 118
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.58 E-value=2.4e-07 Score=74.00 Aligned_cols=51 Identities=31% Similarity=0.436 Sum_probs=42.0
Q ss_pred EEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 120 LDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
||||||+|..+..|+++ ++.+++|+|+++.+++.|+++....+ +.+++.|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~ 51 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDA 51 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBT
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehH
Confidence 89999999999999886 78899999999999999999887553 55777764
No 119
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.58 E-value=1.9e-07 Score=90.48 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=46.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||+|.+...|+.+.+ +++++|+|+.+++.++++... ..+++++++|..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~ 85 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDAL 85 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchh
Confidence 46899999999999999988654 699999999999999988743 246888888753
No 120
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.57 E-value=8.5e-07 Score=83.03 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+|||||||+|.+...++...+..+++++|+++.+++.|+++.. .++.++..|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~ 89 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA 89 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence 468999999999999999988888899999999999999887653 2467777664
No 121
>PRK06202 hypothetical protein; Provisional
Probab=98.56 E-value=1.7e-07 Score=89.32 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=40.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~----~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.+.+|||||||+|.++..|+... ++++++|+|+++.+++.|+++...+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~ 111 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP 111 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC
Confidence 34689999999999988887542 4579999999999999999887544
No 122
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=3.4e-07 Score=90.57 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+.++||||||-|.+.+.+|+++ +++|+|+++|++.++.|++-++.-+ ++++|+++..|..
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~r 132 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYR 132 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccc
Confidence 45799999999999999888865 8999999999999999999999986 9889999988864
No 123
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=6.6e-07 Score=84.72 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=50.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.++..++.... +.+|+++|+++++++.|++|++.++ + ++|+++++|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~ 136 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDG 136 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCc
Confidence 46899999999999988887643 4699999999999999999999885 5 4689988874
No 124
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.55 E-value=6.7e-07 Score=84.01 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=48.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...+|||+|||+|..+..++... .+++++|+++.+++.|++|++.++ +. +++++..|.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~ 135 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LH-NVSVRHGDG 135 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CC-ceEEEECCc
Confidence 34689999999999988777653 389999999999999999999885 64 488888764
No 125
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.55 E-value=2.4e-06 Score=80.98 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=45.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
..+|||||||+|.++..+++. +.+++++|+++.+++.|++++..++ + .++++..+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~ 103 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT 103 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence 468999999999998888763 5689999999999999999998774 4 46666554
No 126
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.3e-07 Score=97.07 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=69.3
Q ss_pred CcEEEecCCCeeCCCCC-cHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHH
Q 015035 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~-R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al 152 (414)
++.|.++++.+.=..+. .+.++.|+.+++... ...++||+=||.|.+++.||. ...+|+|+|++++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV 328 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV 328 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence 67788888766554332 244556677777642 345899999999999999995 345999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 015035 153 EWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 153 ~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.|++|++.|+ +.+ +++...+.
T Consensus 329 ~~A~~NA~~n~-i~N-~~f~~~~a 350 (432)
T COG2265 329 EAAQENAAANG-IDN-VEFIAGDA 350 (432)
T ss_pred HHHHHHHHHcC-CCc-EEEEeCCH
Confidence 99999999997 765 88887763
No 127
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.54 E-value=3.1e-07 Score=85.33 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=62.3
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 015035 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK 173 (414)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~ 173 (414)
.+.|+.|......+ +....+|||+|||.|.+..-|++.-..-..+|||.++.|+++|+.-+++++ +++.|++.+
T Consensus 51 iv~wl~d~~~~~rv-----~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q 124 (227)
T KOG1271|consen 51 IVDWLKDLIVISRV-----SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQ 124 (227)
T ss_pred HHHHHHhhhhhhhh-----cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEE
Confidence 56777777663222 122349999999999999889887655579999999999999998889886 888899999
Q ss_pred ccCC
Q 015035 174 VDNS 177 (414)
Q Consensus 174 ~d~~ 177 (414)
.|+.
T Consensus 125 ~DI~ 128 (227)
T KOG1271|consen 125 LDIT 128 (227)
T ss_pred eecc
Confidence 8865
No 128
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.54 E-value=1.7e-07 Score=96.59 Aligned_cols=58 Identities=14% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.+|||++||+|.+++.++.+....+|+++|+++.|++.|++|++.|+ +. .+++++.|.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~Da 116 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKDA 116 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhhH
Confidence 58999999999999999887665689999999999999999999996 64 456666653
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.54 E-value=1e-06 Score=90.87 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=44.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
+.+|||||||+|.++..+++. .+.+|+|+|+|+++++.|+++++. + .+++...|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQD 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECc
Confidence 468999999999999888764 478999999999999999999842 3 26666554
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.3e-06 Score=84.81 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCeEEEECCcccHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~-~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
...+|||.|||||+++..||.. .+.-+|+..|+.++.++.|++|++..+ +.++|.+...|..+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~--------------- 157 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE--------------- 157 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc---------------
Confidence 3469999999999999999864 455799999999999999999999985 88889988877542
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
.. ..+.||.++--=| +| .
T Consensus 158 ----------------------------------------~~--~~~~vDav~LDmp----------~P--------W-- 175 (256)
T COG2519 158 ----------------------------------------GI--DEEDVDAVFLDLP----------DP--------W-- 175 (256)
T ss_pred ----------------------------------------cc--cccccCEEEEcCC----------Ch--------H--
Confidence 00 1236777765322 11 1
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEec
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~ 331 (414)
+.++.....+++++++.+.+.--+|++.+...|++.|+..+++.|-+
T Consensus 176 -----------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 176 -----------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred -----------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence 23455566788899999999988999999999999999999888865
No 131
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.49 E-value=3.1e-06 Score=85.33 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=43.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+|||||||+|..+..++...+. .|+|+|+|+.++..++...+..+ ...+|.++..+.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~ 181 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGI 181 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCH
Confidence 468999999999999888876443 69999999998876554433322 234688877653
No 132
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.46 E-value=8.3e-06 Score=79.55 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=97.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
.+.+|||-|||||+++..|+... |.-+|+..|+.++.++.|++|++.++ +.++|++.+.|....
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~-------------- 104 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE-------------- 104 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--------------
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc--------------
Confidence 34699999999999999998754 66799999999999999999999996 888999999986420
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
-+.. ..+..||.|+--=| +|..+
T Consensus 105 -------------------------------------g~~~--~~~~~~DavfLDlp----------~Pw~~-------- 127 (247)
T PF08704_consen 105 -------------------------------------GFDE--ELESDFDAVFLDLP----------DPWEA-------- 127 (247)
T ss_dssp ---------------------------------------ST--T-TTSEEEEEEESS----------SGGGG--------
T ss_pred -------------------------------------cccc--cccCcccEEEEeCC----------CHHHH--------
Confidence 0000 01346787764322 23222
Q ss_pred cccCChHHHHHHHHHHHHHhh-ccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEec
Q 015035 274 VCSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~-~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~ 331 (414)
|..+...+ +++|++.+.+.--+|+..+.+.|++.||..+++.|-+
T Consensus 128 -------------i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 128 -------------IPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp -------------HHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -------------HHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE
Confidence 12233344 7899999999989999999999999999999999976
No 133
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.46 E-value=3.8e-07 Score=92.96 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=57.1
Q ss_pred CcEEEecCCCeeCCCCCcH---hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHH
Q 015035 74 GLNWWIPDGQLCPTVPNRS---NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~R~---~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~ 150 (414)
++.|.++++.+.=. ++. ..+.++.+++.. .+..+||+.||+|.+++.||... .+|+|+|+++.
T Consensus 164 ~~~~~~~~~sFfQv--N~~~~~~l~~~~~~~l~~----------~~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~ 229 (352)
T PF05958_consen 164 GLSFRISPGSFFQV--NPEQNEKLYEQALEWLDL----------SKGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEE 229 (352)
T ss_dssp TEEEEEETTS---S--BHHHHHHHHHHHHHHCTT-----------TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HH
T ss_pred ceEEEECCCcCccC--cHHHHHHHHHHHHHHhhc----------CCCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHH
Confidence 56677777766543 332 233444444432 12379999999999999998643 48999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 151 ALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 151 Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
|++.|++|++.|+ + ++++++..+
T Consensus 230 av~~A~~Na~~N~-i-~n~~f~~~~ 252 (352)
T PF05958_consen 230 AVEDARENAKLNG-I-DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHTT----SEEEEE--
T ss_pred HHHHHHHHHHHcC-C-CcceEEEee
Confidence 9999999999996 7 469998765
No 134
>PLN03075 nicotianamine synthase; Provisional
Probab=98.45 E-value=6.5e-07 Score=89.26 Aligned_cols=63 Identities=24% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCCeEEEECCcccHHHH-HHH-HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYP-LLG-ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i-~La-~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+.+|+|||||.|-+.. .++ ..+|+.+|+++|+|+++++.|++++....++.++|+|+.+|..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 45789999999885533 333 4568889999999999999999999652248889999998753
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.42 E-value=1.2e-06 Score=88.39 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.++..+++.... ..|+|+|+++++++.|++|++.++ + +++.++++|.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~ 140 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDG 140 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCh
Confidence 468999999999999999886643 479999999999999999999986 6 4688887763
No 136
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.42 E-value=8.9e-07 Score=83.71 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=75.7
Q ss_pred HHHHhhCCCcccceeecC--CCCcee-eCCChHhHHHHHHHHhhhcCCcEEEecCC--CeeCCCCCcHhHHHHHHHHHcc
Q 015035 30 ALLASLYPSFEPFVFYSR--DGRPRI-DWTDFNATRELTRVLLLHDHGLNWWIPDG--QLCPTVPNRSNYIHWIEDLLSS 104 (414)
Q Consensus 30 ~~La~~yp~~~~~v~~~~--~g~~~i-Df~~~~a~r~Lt~~LL~~~fgl~~~vp~g--vLiPriP~R~~yi~~i~dll~~ 104 (414)
..|.+++|..+.-+.+.. .|..+. +|.--.. ..-+. .....+|+.|.++.. .+.|+ +.+++ ..+...
T Consensus 27 ~~i~~~~~~vktV~~k~~~v~g~~R~~~~~~LaG-~~~~~-t~~~E~G~~f~~D~~kvyfs~r----l~~Er--~Ri~~~ 98 (200)
T PF02475_consen 27 EAILEKNPNVKTVYNKIGIVEGEFRTPDLEVLAG-EPRTE-TIHKENGIRFKVDLSKVYFSPR----LSTER--RRIANL 98 (200)
T ss_dssp HHHHHHC-T-SEEEEE-S-SBTTTTB--EEEEEE-S--SE-EEEEETTEEEEEETTTS---GG----GHHHH--HHHHTC
T ss_pred HHHHHhccCceEEEEecCcCCCCcccccEEEEeC-CCceE-EEEEeCCEEEEEccceEEEccc----cHHHH--HHHHhc
Confidence 456777787777665432 232221 0000000 00001 124578887666544 46775 44443 122221
Q ss_pred CCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 105 NIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 105 ~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
. .++..|+|+.||-|.+++.+|+......|+|+|++|.|+++.++|++.|+ ++++|.+++.|.
T Consensus 99 --v------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~ 161 (200)
T PF02475_consen 99 --V------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDA 161 (200)
T ss_dssp ----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred --C------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence 1 23468999999999999999886677789999999999999999999996 999999999884
No 137
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.42 E-value=6.4e-07 Score=88.38 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=50.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+.+|||||||-|.+++.+|.++ +++|+|+.+|++.++.|++.++..+ +.++++++..|..
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~ 122 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYR 122 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GG
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeecc
Confidence 34699999999999999999876 8999999999999999999999986 9999999988753
No 138
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.42 E-value=2.5e-07 Score=90.11 Aligned_cols=89 Identities=27% Similarity=0.425 Sum_probs=59.4
Q ss_pred EEEecCCC---eeCCCCCcHhHHHHHHHHHccCC--CCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHH
Q 015035 76 NWWIPDGQ---LCPTVPNRSNYIHWIEDLLSSNI--IPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (414)
Q Consensus 76 ~~~vp~gv---LiPriP~R~~yi~~i~dll~~~~--~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~ 150 (414)
+|+--+|+ |--..+.|+.++. .+++.... .|.. ......+|||+|||.|.++..||. .+++|+|+|++++
T Consensus 48 ~wwd~~g~~~~Lh~mn~~Rl~fi~--d~~~~~v~~~~p~~-k~~~g~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~ 122 (282)
T KOG1270|consen 48 TWWDEEGVRHPLHSMNQTRLPFIR--DDLRNRVNNHAPGS-KPLLGMKILDVGCGGGLLSEPLAR--LGAQVTGIDASDD 122 (282)
T ss_pred cccccccchhhhhhccchhhhHHH--HHHHhcccccCCCc-cccCCceEEEeccCccccchhhHh--hCCeeEeecccHH
Confidence 34444444 4445567777664 34444321 1110 011235799999999999999996 5689999999999
Q ss_pred HHHHHHHHHHHCCCCCCcE
Q 015035 151 ALEWAEKNVKSNPHISELI 169 (414)
Q Consensus 151 Al~~A~~N~~~n~~l~~rI 169 (414)
+++.|++....++-++..|
T Consensus 123 ~V~vA~~h~~~dP~~~~~~ 141 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAI 141 (282)
T ss_pred HHHHHHHhhhcCchhcccc
Confidence 9999999988877444433
No 139
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=5.2e-07 Score=94.74 Aligned_cols=93 Identities=22% Similarity=0.167 Sum_probs=70.9
Q ss_pred hhcCCcEEEecCCCeeCCCCCcHhHH-HHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 70 LHDHGLNWWIPDGQLCPTVPNRSNYI-HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 70 ~~~fgl~~~vp~gvLiPriP~R~~yi-~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
.+.-||.|.|+++.+-=..-..++-+ ..|.|++... ....++|++||||.|++++|+. -.+|+|+|++
T Consensus 346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~---------~~k~llDv~CGTG~iglala~~--~~~ViGvEi~ 414 (534)
T KOG2187|consen 346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLP---------ADKTLLDVCCGTGTIGLALARG--VKRVIGVEIS 414 (534)
T ss_pred eecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCC---------CCcEEEEEeecCCceehhhhcc--ccceeeeecC
Confidence 34678999999998887643333222 3455665531 2367999999999999999864 3589999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 149 DVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 149 ~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
++|++-|++|++.|+ ++ +.+++.+.
T Consensus 415 ~~aV~dA~~nA~~Ng-is-Na~Fi~gq 439 (534)
T KOG2187|consen 415 PDAVEDAEKNAQING-IS-NATFIVGQ 439 (534)
T ss_pred hhhcchhhhcchhcC-cc-ceeeeecc
Confidence 999999999999996 74 68888773
No 140
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.41 E-value=1.6e-06 Score=81.52 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=46.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
++.++||||||.|--++.||. .|+.|+|+|+|+.+++.+++-++..+ +. |+....|.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl 86 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADL 86 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BG
T ss_pred CCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecc
Confidence 457999999999999999996 58899999999999999999888885 65 88888775
No 141
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.39 E-value=2.7e-06 Score=83.28 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=42.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~---~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.+...|+...+. +.++|+|+|+.+++.|+++. + .+.+..+|.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d~ 142 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVASS 142 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEeec
Confidence 357999999999999888876653 48999999999999997653 2 356666653
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=98.39 E-value=9.5e-06 Score=83.11 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=45.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH-----HHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV-----KSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~-----~~n~~l~~rI~~~~~d~ 176 (414)
.+.+||+||||.|.....+.+..+..+|+++|||+++++.|++.- .....-..|++++..|.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 456999999999987766665434469999999999999999631 11110135888888874
No 143
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.37 E-value=8.5e-06 Score=82.05 Aligned_cols=59 Identities=19% Similarity=0.005 Sum_probs=40.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
.+.+|||||||+|.....++...+ ..|+|+|.|+.++..++...+... ...++.+...+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ 179 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG 179 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence 346899999999998877776433 379999999999877644333221 22456666554
No 144
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.36 E-value=1.7e-05 Score=74.38 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=52.2
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 015035 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174 (414)
Q Consensus 95 i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~ 174 (414)
+.|+.+.+..... .....+|||||||+|.+...++.. +.+++++|+++.+++.|++++..++ .. ++.+...
T Consensus 30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT 100 (224)
T ss_pred HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence 3566666653210 013468999999999988877763 4579999999999999999998874 42 4676665
Q ss_pred c
Q 015035 175 D 175 (414)
Q Consensus 175 d 175 (414)
+
T Consensus 101 d 101 (224)
T TIGR01983 101 S 101 (224)
T ss_pred C
Confidence 5
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.34 E-value=8.3e-07 Score=84.16 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=54.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.+||+||||+|.-++.+|...| +.+++.+|++++..+.|++|+++.+ +.++|+++.+|.
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda 106 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDA 106 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-H
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEecc
Confidence 46999999999999999998776 6899999999999999999999996 899999999874
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.33 E-value=3.9e-06 Score=77.88 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=34.1
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
.+|||||||+|.+...++.. .+..++|+|+++++++.|++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH
Confidence 58999999999998877754 46788999999999988864
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.31 E-value=1.2e-05 Score=78.83 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=46.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC-C-CCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-I-SELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~-l-~~rI~~~~~d 175 (414)
+.+|||||||+|.++..+++..+..+++++|+|+++++.|+++....+. + ..+++++..|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 4599999999999887777655456899999999999999998754311 1 2467776655
No 148
>PLN02476 O-methyltransferase
Probab=98.28 E-value=2e-06 Score=85.10 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=54.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|..++.+|...+ +.+++++|+++++++.|++|+++++ +.++|+++.+|.
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA 179 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLA 179 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence 46899999999999999988665 5689999999999999999999996 889999999874
No 149
>PRK05785 hypothetical protein; Provisional
Probab=98.27 E-value=2.7e-06 Score=81.44 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=37.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
+.+|||||||+|-++..|+... +.+|+|+|+|+++++.|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence 4689999999999998888765 67999999999999999753
No 150
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.27 E-value=3.3e-06 Score=80.88 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=61.8
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 015035 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (414)
Q Consensus 89 P~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~ 167 (414)
|++..|+.++..+. ...+||+|||+.|.=++.+|...| +.+++.+|++++..+.|++|+++.+ +.+
T Consensus 45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~ 111 (219)
T COG4122 45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD 111 (219)
T ss_pred hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence 66666665554333 346899999999999999999888 7799999999999999999999996 999
Q ss_pred cEEEEEc
Q 015035 168 LIEIRKV 174 (414)
Q Consensus 168 rI~~~~~ 174 (414)
+|.++.+
T Consensus 112 ~i~~~~~ 118 (219)
T COG4122 112 RIELLLG 118 (219)
T ss_pred eEEEEec
Confidence 9998884
No 151
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=1.1e-06 Score=86.22 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=37.0
Q ss_pred CCCeEEEECCcccH----HHHHHHHHhc-----CCeeEEecCcHHHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 115 ~~~~vLDIGtGsG~----I~i~La~~~~-----~~~vvgvDis~~Al~~A~~N~ 159 (414)
.+.+|+|+|||+|- |++.|+...+ +++|+|+|+|+.||+.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45799999999996 5666666544 478999999999999999865
No 152
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.24 E-value=1.1e-07 Score=78.32 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.9
Q ss_pred EEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 015035 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (414)
Q Consensus 120 LDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~ 163 (414)
||||||+|.+...++..++..+++|+|+|+.+++.|++......
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 79999999999999988899999999999999999988888764
No 153
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.22 E-value=3.3e-05 Score=76.98 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||+|||+|.....|+...+ +.+++|+|+|+++|+.|++++.... -..+|.++++|..
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~ 125 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT 125 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence 36899999999999998888776 6899999999999999999987541 2235777888753
No 154
>PLN02366 spermidine synthase
Probab=98.22 E-value=8.7e-05 Score=74.59 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=62.5
Q ss_pred cCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 72 ~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
+||.-+.++-..-.-. +....|-+.+..+.... ...+.+||+||||.|.+...+++..+..+|+.+|||+..
T Consensus 56 ~~g~~L~lDg~~q~~~-~de~~Y~e~l~h~~l~~-------~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~V 127 (308)
T PLN02366 56 TYGKVLVLDGVIQLTE-RDECAYQEMITHLPLCS-------IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMV 127 (308)
T ss_pred CCceEEEECCEeeecC-ccHHHHHHHHHHHHHhh-------CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHH
Confidence 4665555554433322 33344544444332211 123579999999999998888764234689999999999
Q ss_pred HHHHHHHHHHCC-CC-CCcEEEEEccC
Q 015035 152 LEWAEKNVKSNP-HI-SELIEIRKVDN 176 (414)
Q Consensus 152 l~~A~~N~~~n~-~l-~~rI~~~~~d~ 176 (414)
++.|++.....+ .+ ..|++++..|.
T Consensus 128 i~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 128 IDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred HHHHHHhhhhhccccCCCceEEEEChH
Confidence 999999875321 13 35899998874
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.21 E-value=1.4e-05 Score=75.98 Aligned_cols=88 Identities=20% Similarity=0.154 Sum_probs=60.6
Q ss_pred CcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHH
Q 015035 74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVAL 152 (414)
Q Consensus 74 gl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al 152 (414)
+..+.+..+.-+.. | ..+.++.++|.. ....+|||||||||..+..|+.... .-.|+++|+++..+
T Consensus 44 d~~l~i~~~~~is~-P---~~~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~ 110 (209)
T PF01135_consen 44 DRPLPIGCGQTISA-P---SMVARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA 110 (209)
T ss_dssp SS-EEEETTEEE---H---HHHHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred CCCeeecceeechH-H---HHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence 44566666666654 3 233444455542 2346999999999999988887643 34799999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 015035 153 EWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 153 ~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.|++|++..+ + .+|.++.+|.
T Consensus 111 ~~A~~~l~~~~-~-~nv~~~~gdg 132 (209)
T PF01135_consen 111 ERARRNLARLG-I-DNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHT-T-HSEEEEES-G
T ss_pred HHHHHHHHHhc-c-CceeEEEcch
Confidence 99999999885 5 4799998874
No 156
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.5e-05 Score=79.24 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc-cCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~-d~~~~~p~~~~~~~~~~~~ 193 (414)
++..+||-=||||.|.+..+ +-|++++|+|||.++++-|+.|.+..+ +++ ..++.+ |...
T Consensus 197 ~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~--------------- 257 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN--------------- 257 (347)
T ss_pred cCCEeecCcCCccHHHHhhh--hcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc---------------
Confidence 34589999999998876554 678999999999999999999999885 543 444444 4321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
+ ++ ++.+||-|+|-|||-.+...++ ..
T Consensus 258 --------------------------------------l-pl--~~~~vdaIatDPPYGrst~~~~---------~~--- 284 (347)
T COG1041 258 --------------------------------------L-PL--RDNSVDAIATDPPYGRSTKIKG---------EG--- 284 (347)
T ss_pred --------------------------------------C-CC--CCCccceEEecCCCCccccccc---------cc---
Confidence 0 11 1336999999999976542211 00
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEe-cCCCeeEEE
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG 339 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~-~qG~t~Rw~ 339 (414)
=.+.+.++++.+...++++||+.+-.. ..-...+.+.++..+..... +.|.-.|-+
T Consensus 285 -----l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i 341 (347)
T COG1041 285 -----LDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVI 341 (347)
T ss_pred -----HHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEE
Confidence 135788899999999999998754333 23344566788876665443 344445543
No 157
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.19 E-value=1.4e-05 Score=84.00 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||||||+|.++..|+.. ..+++|+|+++.+++.|++ .++ ...++.+++.|.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence 358999999999999998875 3589999999999987654 232 335688888874
No 158
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.19 E-value=5.2e-06 Score=77.65 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...++||+-+|||++++-.+++ ...+++.+|.|.+|+...++|++..+ +..+..++..|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da 102 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDA 102 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecH
Confidence 4579999999999999887664 34589999999999999999999885 778888888773
No 159
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.6e-05 Score=75.66 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=50.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|||||||||--+..||+. -+ +|+.+|+++...+.|++|.+..+ +.+ |.++++|..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l-~~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG~ 130 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARL-VG-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDGS 130 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHH-hC-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCcc
Confidence 4579999999999988888764 33 99999999999999999999996 754 999999854
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.13 E-value=7.7e-06 Score=82.66 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+...|||+|||+|.+++..|+.. ..+|+|+|-+.-| +.|++.++.|+ +++.|+++++..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkv 118 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKV 118 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecce
Confidence 34689999999999998777654 5699999999988 99999999996 999999998864
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.12 E-value=4.8e-06 Score=76.58 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~-~l~~rI~~~~~d~ 176 (414)
.+.+|||||||+|..++.++......+|+.+|.++ +++..+.|++.|+ ....++.+...+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence 45799999999999999888765678999999999 9999999999984 1345677776665
No 162
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.11 E-value=4.6e-06 Score=79.56 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|.|||||.|.-..+|+.++|++.++|+|-|++|++-|+.- .+ ..++..+|..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r---lp----~~~f~~aDl~ 85 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LP----DATFEEADLR 85 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---CC----CCceecccHh
Confidence 45789999999999999999999999999999999999998443 22 3567667643
No 163
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.11 E-value=8.4e-06 Score=78.56 Aligned_cols=140 Identities=25% Similarity=0.239 Sum_probs=95.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
+..+|||-|+|-|-.++..++ .++ +|+-+|.||..|++|+.|==..+..+..|+++.+|.-+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~--rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------------- 196 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALE--RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------------- 196 (287)
T ss_pred cCCEeeeeccCccHHHHHHHH--cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence 457999999999987765443 455 99999999999999998843332234468888887321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
+...+ ++++||+|+-.||=|+.. | |+
T Consensus 197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~A------------g---eL 222 (287)
T COG2521 197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLA------------G---EL 222 (287)
T ss_pred -------------------------------------HHhcC--CccccceEeeCCCccchh------------h---hH
Confidence 11111 468899999999988642 2 22
Q ss_pred cccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcC-------CHHHHHHHHHHcCCceEEEEEecCC
Q 015035 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG 333 (414)
Q Consensus 274 ~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~-------~l~~l~~~l~~~g~~~v~~~e~~qG 333 (414)
. .++||+.|. .+++++|-..--+|.+. -.+.+.+.|++.||..|++.+..-|
T Consensus 223 Y----seefY~El~----RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 223 Y----SEEFYRELY----RILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred h----HHHHHHHHH----HHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence 2 356777654 45666654444555444 2477899999999998877654433
No 164
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.09 E-value=1e-05 Score=76.23 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=43.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
-.++||+|||.|.+...||.+. -+++++|+++.|++.|++.+... .+|++++.+..
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp 99 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADVP 99 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TT
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCC
Confidence 3589999999999999998875 38999999999999999988743 36999998753
No 165
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.07 E-value=9.6e-05 Score=72.18 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhcC------CeeEEecCcHHHHHHHHHHHHHCCCCCCc--EEEEEccC
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVDN 176 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~~~------~~vvgvDis~~Al~~A~~N~~~n~~l~~r--I~~~~~d~ 176 (414)
....++||+|+|||-|+..+....+. .+|+..||+|.+|+.+++-+++.+ +.+. +.++.+|.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDA 168 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCc
Confidence 34579999999999999988876554 799999999999999999998775 6554 78877763
No 166
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.02 E-value=2.2e-05 Score=76.53 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+||+|||++|.-++.+|...+ +.+++.+|++++..+.|++|++..+ +.++|+++.++.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a 140 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPA 140 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccH
Confidence 46899999999999888887664 6799999999999999999999996 899999999874
No 167
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.02 E-value=5.7e-05 Score=71.75 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=49.7
Q ss_pred EEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.||||-.|.+++.|.++..--+++|+||++..++.|++|++.++ +.++|+++.+|.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdG 57 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDG 57 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCc
Confidence 689999999999999987666689999999999999999999996 999999999984
No 168
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.01 E-value=1.1e-05 Score=83.03 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+.++||+.||||..++.++++.++ .+|+++|++++|++.+++|++.|+ +. .+++++.|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~Da 104 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNEDA 104 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchhH
Confidence 368999999999999999987554 489999999999999999999995 64 577777763
No 169
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.00 E-value=1.5e-05 Score=74.84 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|||||||.|.+...|.. ..+.+.+|+|||++.+..|.+ ++ +.++++|..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld 65 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLD 65 (193)
T ss_pred CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHH
Confidence 36999999999998776665 468999999999998776643 33 568888853
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.94 E-value=3.1e-05 Score=81.54 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=47.6
Q ss_pred CCeEEEECCcccHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~----~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...|+|+|||+|.+....++.. ...+|+|+|.++.|+...++-++.|+ ++++|+++++|..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence 4679999999999875544322 24699999999999988888888885 9999999999864
No 171
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.91 E-value=3.4e-05 Score=67.36 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=51.3
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+||+|||.|.++..++...++++++++|.++.+++.+++|++.|+ +. ++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeeee
Confidence 3899999999999999888888899999999999999999999996 64 5888887653
No 172
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=6.1e-05 Score=72.00 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=35.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~ 156 (414)
..+|||+|||.|--++.||. .+++|+|+|+++.|++.|.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence 46999999999999999986 6899999999999999874
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=3.5e-05 Score=74.68 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.+..+|||||-+|.+.+.+|+.+..-.|+|+|||+..++.|++|++.-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 457899999999999999999887778999999999999999998754
No 174
>PTZ00146 fibrillarin; Provisional
Probab=97.86 E-value=0.0011 Score=66.37 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=40.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+|||+|||+|.....++.... .-.|+|+|+++++++...+-++.. .+|.++..|.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 45899999999999999888653 358999999998664443333221 2366777664
No 175
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.86 E-value=6.8e-05 Score=65.80 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~ 154 (414)
...+|||||||.|.+...++.. +.+++|+|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence 4579999999999998888553 4499999999999988
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=7.8e-05 Score=73.16 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=46.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...||+||+|.|++...|+++ ..+|+|+|||+..++..++.... .++++++++|..
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaL 86 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDAL 86 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchh
Confidence 468999999999999999874 34799999999999988877652 357999999864
No 177
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.83 E-value=0.00015 Score=77.27 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=44.3
Q ss_pred CeEEEECCcccHHHHHHHHHhc----CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~----~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
.+|.|.+||||..-+..+.... ...++|.|+++..+.+|+.|.-.++ +...+.+.+.|
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~d 249 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGD 249 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCccccccccc
Confidence 4899999999987766554332 3679999999999999999999886 54334444444
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.81 E-value=0.00081 Score=62.87 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=89.4
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (414)
+++|||||.|.=++.||-.+|+.+++.+|-...=+..-+.-+...+ |+ ++++++....+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~v~~~R~E~------------------- 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVEVINGRAEE------------------- 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEEEEES-HHH-------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEEEEEeeecc-------------------
Confidence 7999999999999999988999999999999999999888888885 75 68888875210
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccC
Q 015035 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (414)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~G 277 (414)
....++||+|+|= |+.
T Consensus 110 --------------------------------------~~~~~~fd~v~aR----------------Av~---------- 125 (184)
T PF02527_consen 110 --------------------------------------PEYRESFDVVTAR----------------AVA---------- 125 (184)
T ss_dssp --------------------------------------TTTTT-EEEEEEE----------------SSS----------
T ss_pred --------------------------------------cccCCCccEEEee----------------hhc----------
Confidence 0124689999871 111
Q ss_pred ChHHHHHHHHHHHHHhhccCcEEEEEeCCcC--CHHHHHHHHHHcCCceEEEEEecCC
Q 015035 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTTEFVQG 333 (414)
Q Consensus 278 Ge~~Fv~rii~eS~~l~~~~~w~t~mvgk~~--~l~~l~~~l~~~g~~~v~~~e~~qG 333 (414)
=+..+++.+..+++++|.+..|-|+.. .++.....++..+.....+.++...
T Consensus 126 ----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~~ 179 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEFELP 179 (184)
T ss_dssp ----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence 134556666778888888889999543 3445566677777777777766443
No 179
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.81 E-value=5.9e-05 Score=76.06 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
....|||+|||||+++...+.. ...+|+|+|-|+ +.++|++-++.|+ +.+||.++.+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~-~~~rItVI~GKi 235 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNN-LADRITVIPGKI 235 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCC-ccceEEEccCcc
Confidence 4467999999999988665543 345899999986 6699999999995 999999998764
No 180
>PLN02823 spermine synthase
Probab=97.77 E-value=0.00065 Score=69.16 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~-~l-~~rI~~~~~d~~ 177 (414)
.+.+||.||+|.|.++..+++..+..+++.+|||++.+++|+++...+. .+ ..|++++..|..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 3468999999999998777664445689999999999999999975431 11 368999888753
No 181
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.75 E-value=0.00016 Score=71.25 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
....||++|-|+|.+...|.. .+.+|+|+|+|+.++..-++-++..+ .+.+.+++++|..
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFL 117 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccc
Confidence 346899999999999887765 46799999999999999988888775 6788999998853
No 182
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.73 E-value=4.5e-05 Score=73.83 Aligned_cols=54 Identities=19% Similarity=0.371 Sum_probs=39.4
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 95 i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
..|+.++...+ .....++|+|||+|.-+..+|. .+. +|+|+|+++.+|+.|++.
T Consensus 21 tdw~~~ia~~~--------~~h~~a~DvG~G~Gqa~~~iae-~~k-~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 21 TDWFKKIASRT--------EGHRLAWDVGTGNGQAARGIAE-HYK-EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred HHHHHHHHhhC--------CCcceEEEeccCCCcchHHHHH-hhh-hheeecCCHHHHHHhhcC
Confidence 46777666542 1223799999999966666665 444 799999999999988654
No 183
>PRK04148 hypothetical protein; Provisional
Probab=97.71 E-value=0.0001 Score=65.58 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCeEEEECCcccH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~-I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++.++||||||+|. ++..|++ .+..|+|+|+++.+++.|+++. +.++..|..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKLG---------LNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhC---------CeEEECcCC
Confidence 34689999999995 8887774 4789999999999988886652 456777764
No 184
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.70 E-value=9.5e-05 Score=70.43 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC----------CCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP----------HISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~----------~l~~rI~~~~~d~~ 177 (414)
+.+|||+|||.|--++.||. .+++|+|+|+|+.|++.|........ .-..+|+++++|..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 36999999999999999986 58999999999999998643211000 01235888888864
No 185
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.69 E-value=0.00019 Score=70.21 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=54.4
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 015035 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (414)
Q Consensus 93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~ 172 (414)
+++..|.+.+.. .+...|||||.|.|.+...|+... .+++++|+|+..++..++....+ .+++++
T Consensus 17 ~~~~~Iv~~~~~---------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~vi 81 (262)
T PF00398_consen 17 NIADKIVDALDL---------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEVI 81 (262)
T ss_dssp HHHHHHHHHHTC---------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEEE
T ss_pred HHHHHHHHhcCC---------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----ccceee
Confidence 455566666543 134689999999999999998765 69999999999999998876633 579999
Q ss_pred EccCC
Q 015035 173 KVDNS 177 (414)
Q Consensus 173 ~~d~~ 177 (414)
+.|..
T Consensus 82 ~~D~l 86 (262)
T PF00398_consen 82 NGDFL 86 (262)
T ss_dssp ES-TT
T ss_pred ecchh
Confidence 99864
No 186
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.65 E-value=0.00021 Score=67.17 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+||||||.|-..+.+|...|+..++|+|+....+..|.+.+...+ + .++.++++|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~ 77 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDAR 77 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHH
Confidence 7999999999999999999999999999999999999999998875 6 57999998753
No 187
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.63 E-value=0.00017 Score=69.19 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=35.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
.+.-|||||||||.-+..|.. ++...+|+|||+.+|+.|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHH
Confidence 457899999999988776654 56788999999999999987
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.60 E-value=0.0002 Score=71.60 Aligned_cols=58 Identities=14% Similarity=-0.060 Sum_probs=50.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
+..+||.+||.|.-+..++...+ +.+|+|+|+|++|++.|++.++. .+++++++.+..
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~ 78 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFS 78 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHH
Confidence 35899999999999999998875 67999999999999999988754 358999998753
No 189
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.59 E-value=0.0019 Score=62.00 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=96.5
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (414)
.++.||||-.+-+++.|-+..+...++++|+++-.++.|.+|++.++ +.++|+++.+|...
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------ 78 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------ 78 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc------------------
Confidence 35999999999999999988888899999999999999999999996 99999999887531
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccccc
Q 015035 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~ 276 (414)
. +..+..+|.|+- +|.
T Consensus 79 -------------------------------------~-l~~~d~~d~ivI----------AGM---------------- 94 (226)
T COG2384 79 -------------------------------------V-LELEDEIDVIVI----------AGM---------------- 94 (226)
T ss_pred -------------------------------------c-cCccCCcCEEEE----------eCC----------------
Confidence 1 112334555542 121
Q ss_pred CChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCC
Q 015035 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ 334 (414)
Q Consensus 277 GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~ 334 (414)
|-..++.|+++....++..-- ..+---.+...|.+.|.++++. ++.-..+..+
T Consensus 95 --GG~lI~~ILee~~~~l~~~~r--lILQPn~~~~~LR~~L~~~~~~-I~~E~ileE~ 147 (226)
T COG2384 95 --GGTLIREILEEGKEKLKGVER--LILQPNIHTYELREWLSANSYE-IKAETILEED 147 (226)
T ss_pred --cHHHHHHHHHHhhhhhcCcce--EEECCCCCHHHHHHHHHhCCce-eeeeeeeccc
Confidence 224688999998877665522 2344478999999999999986 3344444443
No 190
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00053 Score=69.82 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=52.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
+..|+|+=+|-|-+++.+|+... .+|+|+||+|.|+++.++|++.|+ ++++|..+++|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r 248 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR 248 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence 46899999999999999887433 349999999999999999999996 9999999999854
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.38 E-value=0.0018 Score=65.85 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=84.3
Q ss_pred CCCeEEEECCcccH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--------CCCCcEEEEEccCCCCCCcccc
Q 015035 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--------HISELIEIRKVDNSESTPSIQE 185 (414)
Q Consensus 115 ~~~~vLDIGtGsG~-I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~--------~l~~rI~~~~~d~~~~~p~~~~ 185 (414)
.+.+|||||||-|. +.-.... .-..++|+||+..+++.|++-.+... ...-...++.+|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~------- 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS------- 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC-------
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc-------
Confidence 45799999999775 4333221 23489999999999999988772210 001123444444221
Q ss_pred cccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCC-CCcEEEEEECCCcccccccccCCCcc
Q 015035 186 SLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD-GEQFDFCICNPPFFESMEEAGLNPKT 264 (414)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-~~~fD~imcNPPy~~s~ee~~~~P~~ 264 (414)
.-+...+.+ ..+||+|-|-==++ -
T Consensus 133 --------------------------------------------~~l~~~~~~~~~~FDvVScQFalH-----------Y 157 (331)
T PF03291_consen 133 --------------------------------------------ESLREKLPPRSRKFDVVSCQFALH-----------Y 157 (331)
T ss_dssp --------------------------------------------SHHHCTSSSTTS-EEEEEEES-GG-----------G
T ss_pred --------------------------------------------chhhhhccccCCCcceeehHHHHH-----------H
Confidence 001111111 35899999952111 1
Q ss_pred ccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHH----c-----CCceEEEEEecCCCe
Q 015035 265 SCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK----V-----GVTIVKTTEFVQGQT 335 (414)
Q Consensus 265 a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~----~-----g~~~v~~~e~~qG~t 335 (414)
++. -.+-.++|++....++.+||.|.-.+ -+...|...|++ . |=..+.+.-+.....
T Consensus 158 ~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~---~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~ 223 (331)
T PF03291_consen 158 AFE-----------SEEKARQFLKNVSSLLKPGGYFIGTT---PDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFF 223 (331)
T ss_dssp GGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEE---E-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCSS-
T ss_pred hcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEe---cCHHHHHHHHHhhcccccccccCCccEEEEecccCCC
Confidence 111 12346788899899999999764333 356777777777 1 223344433333255
Q ss_pred eEEEEEEEeccc
Q 015035 336 CRWGLAWSFVPP 347 (414)
Q Consensus 336 ~Rw~lAWsf~~~ 347 (414)
..|+..+.|..+
T Consensus 224 ~~fG~~Y~F~L~ 235 (331)
T PF03291_consen 224 PPFGAKYDFYLE 235 (331)
T ss_dssp -CTTEEEEEEET
T ss_pred CCCCcEEEEEec
Confidence 667777777655
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.37 E-value=0.0016 Score=69.18 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=94.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
.+.+|||+|+|.|.-+..||..+.+ -.++|.|+++.-++..++|+++.+ +. +|.+.+.|...
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~--------------- 175 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV--------------- 175 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh---------------
Confidence 4468999999999999999987653 589999999999999999999986 64 47776665321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
+... ..+.||.|++-+|=--..- -..+|.....-+...
T Consensus 176 --------------------------------------~~~~--~~~~fD~ILvDaPCSG~G~-~rk~p~~~~~~s~~~- 213 (470)
T PRK11933 176 --------------------------------------FGAA--LPETFDAILLDAPCSGEGT-VRKDPDALKNWSPES- 213 (470)
T ss_pred --------------------------------------hhhh--chhhcCeEEEcCCCCCCcc-cccCHHHhhhCCHHH-
Confidence 0000 1246999999999532211 112343221111110
Q ss_pred cccCCh-HHHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 274 VCSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 274 ~~~GGe-~~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
+. + ...=.+|++.+..+++++|.+ |+-+...++-.-+...|++++
T Consensus 214 v~---~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 214 NL---EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred HH---HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 00 1 123456888888888888865 445555556666667777764
No 193
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.23 E-value=0.00036 Score=65.55 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=48.3
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+.|+|+|||.++...|+. .-+|+|+|.||.-.++|.+|+.-++ + ++++++.+|...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEeccccc
Confidence 47899999999998765553 4599999999999999999998775 4 579999998643
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.0033 Score=60.06 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE-EEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~-~~~~d~ 176 (414)
.++.+|++|||+|.-...+- -.|+.+|+++|-++.+-++|.+.++.+. ..++. ++.++.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~g 135 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADG 135 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeech
Confidence 34678999999997643321 1367899999999999999999998874 23455 666653
No 195
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.18 E-value=0.0013 Score=58.26 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCCeEEEECCcccHHHHHHHHH----hcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~----~~~~~vvgvDis~~Al~~A~~N~~~n~-~l~~rI~~~~~d 175 (414)
....|+|+|||-|.++..|+.. .++.+|+|+|.++..++.|++..+..+ .+..++.+...+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 4578999999999999999882 278899999999999999998887663 122345544443
No 196
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.15 E-value=0.002 Score=62.16 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=35.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
+.+||+.|||.|.-...||. .+++|+|+|+|+.|++.+.+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence 46999999999999998886 57899999999999999865
No 197
>PRK10742 putative methyltransferase; Provisional
Probab=97.08 E-value=0.0017 Score=63.47 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC------CC-CCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n------~~-l~~rI~~~~~d~ 176 (414)
.+|||+-+|+|..++.++.+ +.+|+++|.++.+..+.+.|+++. +. +..++++++.|.
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 48999999999999998864 778999999999999999999873 11 225688887763
No 198
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.003 Score=59.72 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=45.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
...+|||+|+|||..+++.+. .-...|++.|++|......+.|++.|+ . .|.+...|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence 457999999999998876554 233589999999999999999999996 4 46666655
No 199
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.05 E-value=0.00035 Score=67.00 Aligned_cols=59 Identities=14% Similarity=-0.032 Sum_probs=50.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...|+|.=||.|.-.+..|.+. ..|+++||||.-+.+|++|++-.| +.+||+++++|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~l 153 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFL 153 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec-CCceeEEEechHH
Confidence 3578888888887777777644 589999999999999999999997 9999999999964
No 200
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0018 Score=62.57 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=52.6
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
..+||||||.|-..+.+|++.|...++|+|+....+..|.+-+...+ +. +|.+++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence 47999999999999999999999999999999999999999998885 64 688888874
No 201
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.017 Score=59.31 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=99.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~--~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~ 192 (414)
.+.+|||+|.+.|.=...||....+ ..|+|+|+++.-++..++|+++.| +.+ +.+++.|...
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~-------------- 219 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR-------------- 219 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc--------------
Confidence 4579999999999988888887764 667999999999999999999996 654 6677666321
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCc
Q 015035 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (414)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~E 272 (414)
+.......++||-|++-||=-.+.. ...+|..-..-+...
T Consensus 220 ---------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G~-irr~Pd~~~~~~~~~ 259 (355)
T COG0144 220 ---------------------------------------LAELLPGGEKFDRILLDAPCSGTGV-IRRDPDVKWRRTPED 259 (355)
T ss_pred ---------------------------------------ccccccccCcCcEEEECCCCCCCcc-cccCccccccCCHHH
Confidence 0000112347999999999744322 123454433222221
Q ss_pred ccccCChHHHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 273 MVCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 273 m~~~GGe~~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
+. .-..+=.+|++.+..+++++|-+ |+-+-..++-+-+...|++..
T Consensus 260 i~---~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 260 IA---ELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred HH---HHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 10 01234556888888888888753 455666777777888888864
No 202
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.99 E-value=0.0015 Score=65.08 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCeEEEECCcccH----HHHHHHHHhc----CCeeEEecCcHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANC----IYPLLGASLL----GWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 116 ~~~vLDIGtGsG~----I~i~La~~~~----~~~vvgvDis~~Al~~A~~N~ 159 (414)
..+|...||.||- |+++|....+ +++|+|+|||+.+|+.|++-+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 4799999999994 5555554332 478999999999999998864
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.95 E-value=0.013 Score=57.03 Aligned_cols=62 Identities=16% Similarity=-0.014 Sum_probs=46.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~--~l~~rI~~~~~d~ 176 (414)
++.+||=||-|.|.++-.+.+..+..+++.||||+..++.|++-..... .-..|++++..|.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 4579999999999988877654445699999999999999999765421 0136899988874
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.0026 Score=61.33 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=70.6
Q ss_pred ChHhHHHHHHHHhhhcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHH
Q 015035 57 DFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (414)
Q Consensus 57 ~~~a~r~Lt~~LL~~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~ 136 (414)
.++.+++|.++.+.+- +-.|. -.++ |+-. ..+.-++... .+.+.||||+=+|.=+++.|..
T Consensus 34 e~~~l~el~e~t~~~~-~~~~~----m~v~--~d~g---~fl~~li~~~---------~ak~~lelGvfTGySaL~~Ala 94 (237)
T KOG1663|consen 34 EPELLKELREATLTYP-QPGSE----MLVG--PDKG---QFLQMLIRLL---------NAKRTLELGVFTGYSALAVALA 94 (237)
T ss_pred CcHHHHHHHHHHhhcC-Ccccc----eecC--hHHH---HHHHHHHHHh---------CCceEEEEecccCHHHHHHHHh
Confidence 4777889888876653 22111 1222 2222 2333333321 3468999998888777777776
Q ss_pred hc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 137 LL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 137 ~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.| +-+++++||++++++++.+-++..+ +.++|++++++..
T Consensus 95 lp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 95 LPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPAL 135 (237)
T ss_pred cCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchh
Confidence 76 5799999999999999999999986 9999999998753
No 205
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.87 E-value=0.0016 Score=62.39 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHC
Q 015035 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 86 PriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~--~~vvgvDis~~Al~~A~~N~~~n 162 (414)
|..|-|+..+. .+..+... ....+..+-|-|||+|-+.-.|+-...+ ..|+|+|||+++|++|++|....
T Consensus 29 p~FPVRLAsEi-~qR~l~~l------~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 29 PAFPVRLASEI-FQRALHYL------EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp ----HHHHHHH-HHHHHCTS------SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCccHHHHHHH-HHHHHHhh------cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 45576755542 23333321 1245679999999999988777764443 48999999999999999998643
No 206
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.70 E-value=0.0042 Score=59.48 Aligned_cols=60 Identities=23% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHH-HHHH-HC----CCC----CCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE-KNVK-SN----PHI----SELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~-~N~~-~n----~~l----~~rI~~~~~d~~ 177 (414)
..+||+.|||.|.-...||.+ +.+|+|+|+++.|++.|. +|.. .+ +.. .++|+++++|..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc
Confidence 468999999999999888874 789999999999999983 3321 10 000 235777877754
No 207
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.64 E-value=0.037 Score=53.94 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=39.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
.+.+||=||=+ =.+++++|...+..+|+-+|||+..++.-++.+++.+ +. |+.++.|..+
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~ 103 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD 103 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence 34689999844 4567777766667899999999999999999999986 64 9999998764
No 208
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.62 E-value=0.0069 Score=59.24 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCCCCHHHHHhhCCCcccceeecCCCCceeeCCChHhHHHHHHHHhhhcCCcEEEecCCCeeCCCCCcHhHHHHH-HHHH
Q 015035 24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWI-EDLL 102 (414)
Q Consensus 24 ~~~~dF~~La~~yp~~~~~v~~~~~g~~~iDf~~~~a~r~Lt~~LL~~~fgl~~~vp~gvLiPriP~R~~yi~~i-~dll 102 (414)
..+||.++|.++. .+ ..+..|+++++...+.+|...-.- -+|+..++.+ ..+.
T Consensus 47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST-------------~ERl~~Ld~fY~~if 100 (251)
T PF07091_consen 47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHAST-------------RERLPNLDEFYDEIF 100 (251)
T ss_dssp SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHH-------------HCCGGGHHHHHHHHC
T ss_pred cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccch-------------hhhhhhHHHHHHHHH
Confidence 4677787777663 22 356788999999888777532211 1244344333 3333
Q ss_pred ccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 103 SSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 103 ~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.. + ..+.+|+|||||-.-+++-.....++..++|+|||..+++.-..-+...+ .. .++...|..
T Consensus 101 ~~--~------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~ 164 (251)
T PF07091_consen 101 GR--I------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL 164 (251)
T ss_dssp CC--S---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred hc--C------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence 32 1 23569999999999888766666678899999999999999998887764 44 455555654
No 209
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.58 E-value=0.0075 Score=60.58 Aligned_cols=42 Identities=17% Similarity=0.027 Sum_probs=32.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
.+.+|||||||+|.....++.+.+ ..|+|+|-++..+...+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHH
Confidence 457999999999998877776433 379999998877655433
No 210
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.50 E-value=0.0063 Score=58.16 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+++|||.|+|.++..+++++|+.+++..|. |..++.|++ .+||+++.+|..+
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD 154 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence 35899999999999999999999999999999 888888888 3689999999764
No 211
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.48 E-value=0.036 Score=49.79 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=67.0
Q ss_pred eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 015035 141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA 220 (414)
Q Consensus 141 ~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (414)
+|+|.||+++|++.+++..+..+ +.+++++++..- ++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sH-------------------e~----------------------- 37 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSH-------------------EN----------------------- 37 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-G-------------------GG-----------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCH-------------------HH-----------------------
Confidence 58999999999999999999996 888999998642 11
Q ss_pred CCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEE
Q 015035 221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300 (414)
Q Consensus 221 ~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~ 300 (414)
+...++ .+++|++|-|==|.+.. +.++++. -+--..=++.+..+++++|..
T Consensus 38 -----------l~~~i~-~~~v~~~iFNLGYLPgg--------------Dk~i~T~---~~TTl~Al~~al~lL~~gG~i 88 (140)
T PF06962_consen 38 -----------LDEYIP-EGPVDAAIFNLGYLPGG--------------DKSITTK---PETTLKALEAALELLKPGGII 88 (140)
T ss_dssp -----------GGGT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred -----------HHhhCc-cCCcCEEEEECCcCCCC--------------CCCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence 111122 25899999999887643 3333332 111223347778899999998
Q ss_pred EEEeCCcC-----CHHHHHHHHHHcCC
Q 015035 301 TSMVGRKS-----NLKFLISKLRKVGV 322 (414)
Q Consensus 301 t~mvgk~~-----~l~~l~~~l~~~g~ 322 (414)
+.++..-. -.+.|.+.+....-
T Consensus 89 ~iv~Y~GH~gG~eE~~av~~~~~~L~~ 115 (140)
T PF06962_consen 89 TIVVYPGHPGGKEESEAVEEFLASLDQ 115 (140)
T ss_dssp EEEE--STCHHHHHHHHHHHHHHTS-T
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCc
Confidence 88875322 23556666666543
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.44 E-value=0.012 Score=56.58 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCC-CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 015035 92 SNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (414)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~-~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~ 170 (414)
.-|..++.|.+..... . .. ..+++|||+|+|.=++-||-.+|+.+|+-+|-..+-+..-+.-.+..+ + ++++
T Consensus 48 e~~~rHilDSl~~~~~--~---~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~ 120 (215)
T COG0357 48 ELWQRHILDSLVLLPY--L---DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVE 120 (215)
T ss_pred HHHHHHHHHHhhhhhc--c---cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeE
Confidence 4556666666654211 1 11 479999999999999888888899999999999999988888887775 6 3588
Q ss_pred EEEcc
Q 015035 171 IRKVD 175 (414)
Q Consensus 171 ~~~~d 175 (414)
++++.
T Consensus 121 i~~~R 125 (215)
T COG0357 121 IVHGR 125 (215)
T ss_pred Eehhh
Confidence 88765
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.42 E-value=0.0017 Score=62.82 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
-.++||||||||..+..|-.. -.+++|+|||..+++.|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 468999999999998877542 23789999999999998764
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.36 E-value=0.0061 Score=63.67 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
...+.+||||||+|.++.+.+... +-.|+|+|+=.-+.++|++-..+|| .+++|++++-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr 124 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR 124 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence 345689999999999987655444 4579999999999999999999997 99999998754
No 215
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.24 E-value=0.0071 Score=58.45 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=32.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~ 154 (414)
....+||+|||+|.++..++.. ...+|+|+|+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 3458999999999999888864 34589999999988765
No 216
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.14 Score=50.83 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+||+-|||||.++.+++... |--+++-.|+...-.+.|.+-.+..+ +.+.+++++-|.+.
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG 168 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence 4689999999999999888764 55699999999999999999999996 99999999998764
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.081 Score=52.79 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~--~l~~rI~~~~~d~ 176 (414)
+.+||=||-|.|...-.+.+..+-.+++.||||++.+++|++=...-. ....|++++..|.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 369999999999999888876666799999999999999998764321 1136888888774
No 218
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.04 E-value=0.018 Score=61.83 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=50.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
....+||||||.|-..+.+|...|+..++|+|+....+..|.+.+...+ +. ++.++..|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~ 405 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN 405 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence 3468999999999999999999999999999999999998888887775 64 57776655
No 219
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.91 E-value=0.0058 Score=62.17 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=33.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHH-------HHHHHHHHCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE-------WAEKNVKSNP 163 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~-------~A~~N~~~n~ 163 (414)
+.-|.|-=.|||.+.+ +....|+-|+|+|||-.++. .-+.|.+..+
T Consensus 209 GdivyDPFVGTGslLv--saa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSLLV--SAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred CCEEecCccccCceee--ehhhhcceeeccccchheeecccCCCcchhHhHHHhC
Confidence 4578998888886644 44467899999999999887 2345555554
No 220
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.86 E-value=0.06 Score=53.94 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~~~--~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
+.+++||||.||.|---+-.....+. .++...|.++.+++..++-++.++ +++.++|.++|..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd 199 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD 199 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence 57799999999999865555555665 699999999999999999999996 99888999999654
No 221
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.69 E-value=0.0095 Score=58.03 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=42.8
Q ss_pred CeEEEECCcccHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~--~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.+||+||||.|-...-|.+..++ ..+++.|-+|.|++.-++|...+. .++.....|.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dl 131 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDL 131 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceec
Confidence 48999999999754444444555 899999999999999999987763 4554444443
No 222
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.67 E-value=0.075 Score=53.96 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=99.0
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC----c
Q 015035 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE----L 168 (414)
Q Consensus 93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~----r 168 (414)
++=-||..+|-.... .....++|||||-|.=.+-..+.. --.++|+||.+.+++.|++-.+.-.+..+ .
T Consensus 101 nfNNwIKs~LI~~y~------~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~ 173 (389)
T KOG1975|consen 101 NFNNWIKSVLINLYT------KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT 173 (389)
T ss_pred hhhHHHHHHHHHHHh------ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccce
Confidence 445677665543211 123468999999996544333221 13799999999999999886643211112 2
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 015035 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (414)
Q Consensus 169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcN 248 (414)
+.++.+|-.. + .+..-+-.++.+||+|=|-
T Consensus 174 a~f~~~Dc~~------------------------------------~--------------~l~d~~e~~dp~fDivScQ 203 (389)
T KOG1975|consen 174 AVFIAADCFK------------------------------------E--------------RLMDLLEFKDPRFDIVSCQ 203 (389)
T ss_pred eEEEEeccch------------------------------------h--------------HHHHhccCCCCCcceeeee
Confidence 5666666321 0 0000111124559999885
Q ss_pred CCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcC-----Cc
Q 015035 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-----VT 323 (414)
Q Consensus 249 PPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g-----~~ 323 (414)
=-|+-+ +. ..+=.++++..+...|++||.| ||.--+...|+..|++.+ -.
T Consensus 204 F~~HYa-----------Fe-----------tee~ar~~l~Nva~~LkpGG~F---IgTiPdsd~Ii~rlr~~e~~~~gNd 258 (389)
T KOG1975|consen 204 FAFHYA-----------FE-----------TEESARIALRNVAKCLKPGGVF---IGTIPDSDVIIKRLRAGEVERFGND 258 (389)
T ss_pred eeEeee-----------ec-----------cHHHHHHHHHHHHhhcCCCcEE---EEecCcHHHHHHHHHhccchhhcce
Confidence 433221 11 1234677888888999999975 555567888888888762 22
Q ss_pred eEEE----EEecCCCeeEEEEEEEeccc
Q 015035 324 IVKT----TEFVQGQTCRWGLAWSFVPP 347 (414)
Q Consensus 324 ~v~~----~e~~qG~t~Rw~lAWsf~~~ 347 (414)
.+++ .....+++.=++.-+.|..+
T Consensus 259 iykv~y~~~~~k~~~~p~fG~kY~F~Le 286 (389)
T KOG1975|consen 259 IYKVTYEIEFQKEFDVPPFGAKYRFHLE 286 (389)
T ss_pred eeeEeeeeecccccCCCCccceEEEEcc
Confidence 3222 22233344555666666554
No 223
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.59 E-value=0.052 Score=54.75 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=50.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
+..++|-=+|.|.-+..++...++.+|+|+|.|+.|++.|++..+.. .+++.+++.+..
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF~ 79 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNFA 79 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCHH
Confidence 45899999999999999988776689999999999999999988654 468999988753
No 224
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.53 E-value=0.28 Score=44.25 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.3
Q ss_pred EEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 015035 143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (414)
Q Consensus 143 vgvDis~~Al~~A~~N~~~n~-~l~~rI~~~~~d~ 176 (414)
+|+|+|+.+|+.|+++.+... ....+|+++++|.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~ 35 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA 35 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech
Confidence 589999999999987765321 1234799998875
No 225
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.20 E-value=0.13 Score=48.95 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=40.9
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~ 163 (414)
+||+||+|||--+...|..+|..+..-+|+++..+..-+..+...+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~ 73 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG 73 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC
Confidence 6999999999999999999999999999999999877777666654
No 226
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.03 E-value=0.48 Score=46.74 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=32.5
Q ss_pred eEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHH
Q 015035 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~ 159 (414)
+++|+.||+|.+...+.. .+. .+.++|+++.|++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~--~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK--AGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHH--cCCEEEEEEeCCHHHHHHHHHhC
Confidence 689999999988765554 344 4688999999999988886
No 227
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.81 E-value=0.12 Score=49.25 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=38.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH-------CCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-------NPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~-------n~~l~~rI~~~~~d~ 176 (414)
....+|||||.|-+-+..|...+--+.+|+|+.+...+.|+.+.+. .+.-..++++.++|.
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4689999999999877666544433599999999999999876543 221124566666654
No 228
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.80 E-value=0.041 Score=46.63 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=38.5
Q ss_pred cEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeC-----CcCCHHHHHH
Q 015035 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS 315 (414)
Q Consensus 241 ~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvg-----k~~~l~~l~~ 315 (414)
+||+||.||||............ ... ....+.-+++.+..++ .|.+...+. .....+.+.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~---~~~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK---KKK---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhc---ccc---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 69999999999986543211000 000 2346677888888887 555443332 2344566666
Q ss_pred HHHHc
Q 015035 316 KLRKV 320 (414)
Q Consensus 316 ~l~~~ 320 (414)
.|-+.
T Consensus 68 ~l~~~ 72 (106)
T PF07669_consen 68 FLLNN 72 (106)
T ss_pred HHhcC
Confidence 65443
No 229
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.66 E-value=0.076 Score=56.79 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=36.7
Q ss_pred CeEEEECCcccHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP 163 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~----~~~~vvgvDis~~Al~~A~~N~~~n~ 163 (414)
..+.|.+||||-......... ....++|-|+.+.+...|+.|...++
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 579999999998765433322 12469999999999999999987764
No 230
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.051 Score=49.57 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred CeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 83 vLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.-+|-+|-+.+-++.+..++.. ..+++.+|||+|-|-|-+..+... -..-+|+|++|-.+.+++-.+-+.
T Consensus 49 ~cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~ 118 (199)
T KOG4058|consen 49 LCVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA 118 (199)
T ss_pred ecccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH
Confidence 3456677776666666555543 245789999999999876655432 246799999999999999999888
Q ss_pred CCCCCcEEEEEccCC
Q 015035 163 PHISELIEIRKVDNS 177 (414)
Q Consensus 163 ~~l~~rI~~~~~d~~ 177 (414)
+ +..+..++.-|..
T Consensus 119 g-~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 119 G-CAKSTRFRRKDLW 132 (199)
T ss_pred h-cccchhhhhhhhh
Confidence 6 8888888776643
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.54 E-value=0.041 Score=51.97 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCeEEEECCcccH----HHHHHHHHh---c--CCeeEEecCcHHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANC----IYPLLGASL---L--GWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 115 ~~~~vLDIGtGsG~----I~i~La~~~---~--~~~vvgvDis~~Al~~A~~N 158 (414)
.+.+|...||+||- |+++|.... . .++|+|+|||+.+|+.|++=
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 56899999999994 455554422 2 36999999999999999863
No 232
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.39 E-value=0.055 Score=51.72 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=42.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.++.+.|||||-|-+.+.|+-.+|+--++|.||-...-++-+.-++..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999989888887654
No 233
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.36 E-value=0.13 Score=50.71 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhcCCcE---EEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHH
Q 015035 60 ATRELTRVLLLHDHGLN---WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (414)
Q Consensus 60 a~r~Lt~~LL~~~fgl~---~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~ 136 (414)
-.+.+.+.+|..||... =.+..|..-= =++ .....+|......+. ...+..++||||.|.|-+...++..
T Consensus 43 l~~~l~~~~L~~f~S~T~iNG~LgRG~MFv--fS~----~Q~~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~ 115 (265)
T PF05219_consen 43 LWHSLASSILSWFMSKTDINGILGRGSMFV--FSE----EQFRKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPL 115 (265)
T ss_pred HHHHHHHHHHHHHHhHHhHhhhhcCCcEEE--ecH----HHHHHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhh
Confidence 34778888898888763 2344443111 011 233345543211111 1124568999999999999999875
Q ss_pred hcCCeeEEecCcHHHHH
Q 015035 137 LLGWSFVGSDMTDVALE 153 (414)
Q Consensus 137 ~~~~~vvgvDis~~Al~ 153 (414)
+. +|+++|+|+.|..
T Consensus 116 f~--~v~aTE~S~~Mr~ 130 (265)
T PF05219_consen 116 FK--EVYATEASPPMRW 130 (265)
T ss_pred cc--eEEeecCCHHHHH
Confidence 54 6999999999843
No 234
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.30 E-value=0.52 Score=45.33 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEE-EEEe-CCcCCHHHHHH
Q 015035 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLIS 315 (414)
Q Consensus 238 ~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~-t~mv-gk~~~l~~l~~ 315 (414)
+++..|++||-= ++-|+. +..+|+|+.+.++.+|++ ..|| ++..+.+..++
T Consensus 119 ~~~svDv~VfcL---------------SLMGTn------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 119 EDESVDVAVFCL---------------SLMGTN------------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp -TT-EEEEEEES------------------SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred CCCceeEEEEEh---------------hhhCCC------------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 357899999743 344544 456778898888877753 3444 55667888889
Q ss_pred HHHHcCCceEEEEEecCC
Q 015035 316 KLRKVGVTIVKTTEFVQG 333 (414)
Q Consensus 316 ~l~~~g~~~v~~~e~~qG 333 (414)
.+.+.||.... +|.+.
T Consensus 172 ~~~~~GF~~~~--~d~~n 187 (219)
T PF05148_consen 172 ALKKLGFKLKS--KDESN 187 (219)
T ss_dssp HHHCTTEEEEE--EE--S
T ss_pred HHHHCCCeEEe--cccCC
Confidence 99999997543 45443
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.04 E-value=0.15 Score=50.70 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=95.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
....|||+|+|.|.=...++..+. ...++|.|+++.-++..+.|+++.| +. .+.+...|...
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~--------------- 147 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK--------------- 147 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH---------------
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc---------------
Confidence 346799999999998888888766 5799999999999999999999996 53 56666655221
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em 273 (414)
+.... ....||.|+.-+|=-.+.. ...+|..-..-... .
T Consensus 148 -------------------------------------~~~~~--~~~~fd~VlvDaPCSg~G~-i~r~p~~~~~~~~~-~ 186 (283)
T PF01189_consen 148 -------------------------------------LDPKK--PESKFDRVLVDAPCSGLGT-IRRNPDIKWRRSPE-D 186 (283)
T ss_dssp -------------------------------------HHHHH--HTTTEEEEEEECSCCCGGG-TTTCTTHHHHE-TT-H
T ss_pred -------------------------------------ccccc--cccccchhhcCCCccchhh-hhhccchhhccccc-c
Confidence 00001 1236999999999644321 12344432211111 0
Q ss_pred cccCChHH-HHHHHHHHHHHhh----ccCcEE---EEEeCCcCCHHHHHHHHHHcC
Q 015035 274 VCSGGERA-FITRIIEDSVALK----QTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (414)
Q Consensus 274 ~~~GGe~~-Fv~rii~eS~~l~----~~~~w~---t~mvgk~~~l~~l~~~l~~~g 321 (414)
+ -.+. .=.+|++.+..+. +++|.. |+-+.+.++-.-+...|+++.
T Consensus 187 ~---~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 187 I---EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp H---HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred c---chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 0 0222 3345888888888 777642 556677778888888888874
No 236
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.89 E-value=0.15 Score=52.86 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~-rI~~~~~d~ 176 (414)
+.++||.=+|||.=++..+++.++ .+|++-|+|++|++..++|++.|+ +++ ++++.+.|.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA 111 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA 111 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence 468999999999999999998654 689999999999999999999996 887 788888774
No 237
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.14 Score=49.24 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=37.7
Q ss_pred CCeEEEECCcccHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~--~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
..+.||+|+|||.+....|.. .++...+|+|.-++.++.+++|+...
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 368999999999887666543 23445599999999999999999765
No 238
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.63 E-value=0.29 Score=48.70 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=47.9
Q ss_pred CCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHH-HHHH-hcCCeeEEecCcHHHHHHHHHHHH-HCCC
Q 015035 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL-LGAS-LLGWSFVGSDMTDVALEWAEKNVK-SNPH 164 (414)
Q Consensus 88 iP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~-La~~-~~~~~vvgvDis~~Al~~A~~N~~-~n~~ 164 (414)
.|--.||+..+..-+...... ..+.+.+|+=||+|.==+..+ |++. .++..|+++|+|++|++.|++-++ .. +
T Consensus 96 FpYy~nY~~L~~lE~~~l~~~---~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~-~ 171 (276)
T PF03059_consen 96 FPYYPNYEKLVRLEYAALRIH---AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL-G 171 (276)
T ss_dssp STTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHHHhhc---CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-c
Confidence 355677887664332211000 112345999999997655544 4443 357889999999999999999888 44 4
Q ss_pred CCCcEEEEEccC
Q 015035 165 ISELIEIRKVDN 176 (414)
Q Consensus 165 l~~rI~~~~~d~ 176 (414)
++.+++++.+|.
T Consensus 172 L~~~m~f~~~d~ 183 (276)
T PF03059_consen 172 LSKRMSFITADV 183 (276)
T ss_dssp H-SSEEEEES-G
T ss_pred ccCCeEEEecch
Confidence 888999998874
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.46 E-value=0.11 Score=51.52 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCeEEEECCccc----HHHHHHHHHhc-----CCeeEEecCcHHHHHHHHH
Q 015035 115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 115 ~~~~vLDIGtGsG----~I~i~La~~~~-----~~~vvgvDis~~Al~~A~~ 157 (414)
...+|.-.||+|| .|+++|....+ .++|+|+|||..+|+.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4689999999999 57777776664 5799999999999999975
No 240
>PRK11524 putative methyltransferase; Provisional
Probab=93.42 E-value=0.3 Score=48.36 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=43.7
Q ss_pred CCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHH
Q 015035 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR 318 (414)
Q Consensus 239 ~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~ 318 (414)
+++||+|++||||..........+ . .....=+++...++.++..+++++|.+.+.++ ...+..+ ..+.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~--~--------~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~~-~~~~ 92 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIE--A--------WKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPFI-DLYC 92 (284)
T ss_pred cCcccEEEECCCcccccccccccc--c--------ccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhHH-HHHH
Confidence 578999999999975211111100 0 00001245678888999999999998877655 4445443 3444
Q ss_pred HcCC
Q 015035 319 KVGV 322 (414)
Q Consensus 319 ~~g~ 322 (414)
+.|+
T Consensus 93 ~~~f 96 (284)
T PRK11524 93 RKLF 96 (284)
T ss_pred hcCc
Confidence 5565
No 241
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.39 E-value=2 Score=41.09 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=89.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~-~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (414)
...|+|||+-.|.=+-.+++... +..|+|+|++|-. + . ..|.+++.|.... . +
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-~-~~V~~iq~d~~~~--~--------~--- 99 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-I-PGVIFLQGDITDE--D--------T--- 99 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-C-CCceEEeeeccCc--c--------H---
Confidence 46899999999987766666543 3569999999853 1 2 2388999886530 0 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCccc
Q 015035 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (414)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~ 274 (414)
. ..|...+ ....+|+|||-+ .|++.-.-..++..
T Consensus 100 ~---------------------------------~~l~~~l--~~~~~DvV~sD~-----------ap~~~g~~~~Dh~r 133 (205)
T COG0293 100 L---------------------------------EKLLEAL--GGAPVDVVLSDM-----------APNTSGNRSVDHAR 133 (205)
T ss_pred H---------------------------------HHHHHHc--CCCCcceEEecC-----------CCCcCCCccccHHH
Confidence 0 0112111 234579999755 12221111111110
Q ss_pred ccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCe---eEEEEEEEecc
Q 015035 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP 346 (414)
Q Consensus 275 ~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t---~Rw~lAWsf~~ 346 (414)
-.......++-+..++.++|-|..-+=.....+.+...++++ |..|++.+-...+. .=++++|.|..
T Consensus 134 ----~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 134 ----SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred ----HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence 112223334445567777777666555567788888888764 66777777665553 34677777654
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.27 E-value=0.19 Score=49.71 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=37.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.+.+|||+|+|.|.-..++...++. .+++++|.|+.++++++.-++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 5679999999999755444444443 47999999999999999876544
No 243
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.00 E-value=0.1 Score=54.65 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~r-I~~~~~d~~ 177 (414)
+..|.|+.||.|-.++-+++ .+.+|+|-|.+++++++-+.|+..|. +... |++++.|..
T Consensus 250 gevv~D~FaGvGPfa~Pa~k--K~crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAK--KGCRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAK 309 (495)
T ss_pred cchhhhhhcCcCccccchhh--cCcEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHH
Confidence 35789999999998887775 45899999999999999999999995 7665 998888743
No 244
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.57 E-value=0.24 Score=45.61 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
++..|||.-+|||..+.+ +...+-+.+|+|++++.+++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~a--a~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVA--AEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHH--HHHTT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHH--HHHcCCeEEEEeCCHHHHHHhcC
Confidence 456899999999987643 44556689999999999999975
No 245
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.27 E-value=0.58 Score=37.31 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=36.4
Q ss_pred EEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
++|+|||+|... .++..... ..++|+|+++.+++.++..... ..... +.++..+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 107 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-VDFVVADA 107 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-eEEEEecc
Confidence 999999999876 33332222 5899999999999986655533 21211 56666653
No 246
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.01 E-value=0.36 Score=49.01 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=41.7
Q ss_pred CCeEEEECCcccHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~----~~~~vvgvDis~~Al~~A~~N~~~n~~l~-~rI~~~~~d~ 176 (414)
...++|+|||+|-=...|...+ ..+..+++|||.++|+.|..++.... .. -.|.-+.+|.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~gdy 141 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLLGTY 141 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEEecH
Confidence 3579999999998544443333 24789999999999999999988221 22 1244466664
No 247
>PRK13699 putative methylase; Provisional
Probab=91.38 E-value=1.4 Score=42.45 Aligned_cols=75 Identities=12% Similarity=0.319 Sum_probs=50.5
Q ss_pred CCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHH
Q 015035 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317 (414)
Q Consensus 238 ~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l 317 (414)
+++++|+|++-|||.-...... -+. ..+ . .-.+|....+.++.+++++++++.+..+ ..+...+...+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~--~~~-~~~-~-------~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al 84 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQ--GRT-IAG-D-------KTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW 84 (227)
T ss_pred CccccceEEeCCCcccccccCC--Ccc-ccc-c-------cHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence 4689999999999974311100 000 011 1 1246788899999988888888766555 55677788889
Q ss_pred HHcCCce
Q 015035 318 RKVGVTI 324 (414)
Q Consensus 318 ~~~g~~~ 324 (414)
++.|+..
T Consensus 85 ~~~GF~l 91 (227)
T PRK13699 85 KNAGFSV 91 (227)
T ss_pred HHCCCEE
Confidence 9999853
No 248
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.14 E-value=0.44 Score=49.21 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=49.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
..+++|-=+|||+=++..+.+.+..+++.-||||+|++.+++|++.|. . ..+.+++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~D 110 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKD 110 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecch
Confidence 468999999999999999998887799999999999999999999993 2 345555544
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=91.06 E-value=0.58 Score=48.08 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=36.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
...++|||||++|.-.-.|..+ +.+|+|||..+-+ .++..+ .+|..+..+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~----~~V~h~~~d~ 261 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT----GQVEHLRADG 261 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC----CCEEEEeccC
Confidence 4568999999999988777764 6799999976533 223333 4688877764
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=90.97 E-value=0.65 Score=45.95 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=37.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.+..|||--+|||.-+++ +...+-+++|+|++++.+++|++-++..
T Consensus 208 ~GD~VLDPF~GSGTT~~A--A~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAV--AKASGRKFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred CCCEEEECCCCCcHHHHH--HHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 457899999999977643 3445668999999999999999987543
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.41 E-value=0.53 Score=47.68 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=46.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
....++|.=-|.|.-+..+..++++.+++|+|.|++|++.|+++++.. .+++.+++.+.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F 78 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNF 78 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-G
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccH
Confidence 346899999999999999998888899999999999999998887643 47899999875
No 252
>PHA01634 hypothetical protein
Probab=89.94 E-value=0.69 Score=41.37 Aligned_cols=48 Identities=6% Similarity=-0.226 Sum_probs=36.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~ 163 (414)
.+.+|+|||.+.|.-++..+.+ ..-.|+++|.++...+..++|++.|+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 4568999998777555444432 22389999999999999999999885
No 253
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.90 E-value=4.1 Score=40.66 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccC-cEEEEEeC-CcCCHHHHHHHHHHcCCce
Q 015035 283 ITRIIEDSVALKQTF-RWYTSMVG-RKSNLKFLISKLRKVGVTI 324 (414)
Q Consensus 283 v~rii~eS~~l~~~~-~w~t~mvg-k~~~l~~l~~~l~~~g~~~ 324 (414)
+..+|.|+.+++..+ .||..+|- +.+....+...|..+||..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 445667777765554 57777773 4456677788888999974
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.74 E-value=0.2 Score=41.49 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=15.3
Q ss_pred EEECCcccHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 120 LDIGtGsG~I~i~La~~~~~---~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
|+|||..|.-+..+++..+. .+++++|..+. .+.++++++..+ +.+++++++++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s 58 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDS 58 (106)
T ss_dssp --------------------------EEEESS-------------GG-G-BTEEEEES-T
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCc
Confidence 68998888877777765443 37999999996 455566666553 777899999874
No 255
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=89.48 E-value=1.1 Score=41.85 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHH
Q 015035 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 82 gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~-~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
|.+.|..+ |++..+... +. ...+.-||++|.|+|.|.-.+.++ .+...++++|.|++-+..-.+..
T Consensus 27 GaI~PsSs-------~lA~~M~s~-I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~- 93 (194)
T COG3963 27 GAILPSSS-------ILARKMASV-ID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY- 93 (194)
T ss_pred eeecCCcH-------HHHHHHHhc-cC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-
Confidence 55777643 445554443 11 134568999999999999877664 45678999999999977654332
Q ss_pred HCCCCCCcEEEEEccC
Q 015035 161 SNPHISELIEIRKVDN 176 (414)
Q Consensus 161 ~n~~l~~rI~~~~~d~ 176 (414)
+.+.++++|.
T Consensus 94 ------p~~~ii~gda 103 (194)
T COG3963 94 ------PGVNIINGDA 103 (194)
T ss_pred ------CCccccccch
Confidence 2355777764
No 256
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=88.36 E-value=0.29 Score=44.58 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV 150 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~ 150 (414)
...++|||||+.|...-.+..+. +.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999988887765 4689999999876
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=87.61 E-value=1.1 Score=44.47 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=38.3
Q ss_pred CeEEEECCccc---HHHHHHHH-HhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 117 VKGFDIGTGAN---CIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG---~I~i~La~-~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
...||||||-- .+-- +|+ ..|+++|+-||+||.++..++.-+..++ ..+..++++|..+
T Consensus 70 rQFLDlGsGlPT~~nvHe-vAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHE-VAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HHH-HHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHhH-HHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCC
Confidence 47999999943 2222 333 3689999999999999999999988774 2468999999764
No 258
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.46 E-value=3.8 Score=41.51 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
....+|.--|.|.-+-.+..+++. .+++|+|.|+.|++.|++....++ +|+.+++...
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F 82 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNF 82 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcH
Confidence 368999999999999998888875 469999999999999999988763 7899999864
No 259
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.08 E-value=0.69 Score=40.00 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
.....+|||||.|.+--+|.+ -+....|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS--EGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHh--CCCCccccccc
Confidence 346799999999987655554 34566788864
No 260
>PRK13699 putative methylase; Provisional
Probab=86.02 E-value=2.9 Score=40.26 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=37.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
.+..|||.=||||..+++ +...+-+++|+|++++..+.|.+.++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~a--a~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVA--ALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHH--HHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 446899999999987654 3345678999999999999998888654
No 261
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.04 E-value=0.48 Score=50.53 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
.++.+|||-=++||.-++..|++.+++ +++|-|.++.+++.-++|++.|+ .++.++..+.|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~D 169 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSD 169 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccch
Confidence 356789999999999999999999985 79999999999999999999995 77777776665
No 262
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.99 E-value=2.7 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=43.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH---HCC-CC-CCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK---SNP-HI-SELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~---~n~-~l-~~rI~~~~~d~ 176 (414)
...++|=+|-|-|.-.-.|. ++|+ -+++-||.||++++.|++|.. .|. .+ +.|++++..|.
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 34689999999996655554 4674 589999999999999997642 221 12 24677776653
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=83.75 E-value=0.95 Score=43.27 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=30.0
Q ss_pred CCCeEEEECCcccHHHHH---HHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPL---LGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~---La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++..|+++|+=.|.=++. +.+.+ +..+|+|+||+...... +-++.++ +..+|+++++|..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSI 95 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCC
Confidence 456899999955543333 33344 56799999997655432 2234465 7789999999853
No 264
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.55 E-value=4.7 Score=39.64 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~A 151 (414)
+..+||++|+|+|..+++.| ....++++-+|+-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVV 121 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhH
Confidence 35689999999997776555 4577899999986543
No 265
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=82.21 E-value=3.2 Score=40.05 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~ 161 (414)
...++||.|+|-|-+.-.|..... -+|..+|..+..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence 346899999999999876554333 3899999999999999987654
No 266
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=0.59 Score=43.44 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=39.2
Q ss_pred CCeEEEECCcccHH-HHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 116 KVKGFDIGTGANCI-YPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 116 ~~~vLDIGtGsG~I-~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
..+||++|-|--++ ++++|..-+...|..+|-++++++..++.+..|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 46899999996665 456677778889999999999999988888777
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=81.63 E-value=2.4 Score=41.38 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=32.1
Q ss_pred eEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 015035 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~~ 160 (414)
+++|+.||.|.+.+.+-. .++ .+.|+|+++.|.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~--ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ--AGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHH--TTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHh--cCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999988766554 344 57799999999998888864
No 268
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.08 E-value=3.6 Score=35.83 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=32.4
Q ss_pred EECCcccHHHHHH--H--HHhcCCeeEEecCcHHHHHHHHHH--HHHCCCCCCcEEEEEcc
Q 015035 121 DIGTGANCIYPLL--G--ASLLGWSFVGSDMTDVALEWAEKN--VKSNPHISELIEIRKVD 175 (414)
Q Consensus 121 DIGtGsG~I~i~L--a--~~~~~~~vvgvDis~~Al~~A~~N--~~~n~~l~~rI~~~~~d 175 (414)
|||++.|.....+ . ...++.+++++|.+|..++..++| +..|+ ..+.+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEee
Confidence 8999999333322 2 334678999999999999999999 77774 43446666553
No 269
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.20 E-value=5.2 Score=40.72 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.1
Q ss_pred eEEEECCcc-cHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 118 KGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 118 ~vLDIGtGs-G~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
+++=+|||+ |.+++.+++.....+|+++|++++-++.|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 799999987 4444556665566799999999999999987
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=78.57 E-value=4 Score=40.41 Aligned_cols=77 Identities=12% Similarity=-0.157 Sum_probs=52.4
Q ss_pred hcCCcEEEecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHH
Q 015035 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (414)
Q Consensus 71 ~~fgl~~~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~ 150 (414)
..||.-+-++ ++.. .++-+++. .|.|..-.+ .....+.+||=||-|-|...--+.+. +. +|+.||||++
T Consensus 37 ~~fGr~LvLD-~~~~---te~dEfiY--HEmLvHppl---~~h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~ 105 (262)
T PRK00536 37 KDFGEIAMLN-KQLL---FKNFLHIE--SELLAHMGG---CTKKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEK 105 (262)
T ss_pred cccccEEEEe-eeee---ecchhhhH--HHHHHHHHH---hhCCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHH
Confidence 3677777777 6664 23444442 244433111 11235689999999999998887763 44 9999999999
Q ss_pred HHHHHHHH
Q 015035 151 ALEWAEKN 158 (414)
Q Consensus 151 Al~~A~~N 158 (414)
.++.|++-
T Consensus 106 Vv~~~k~~ 113 (262)
T PRK00536 106 ILDSFISF 113 (262)
T ss_pred HHHHHHHH
Confidence 99999994
No 271
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=75.86 E-value=5.7 Score=40.01 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=41.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
+..|+=+| ---..+++++.....-++.-+|||+..++.-.+-++..+ + ++|+.+.-|..+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~-~~ie~~~~Dlr~ 212 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-Y-NNIEAFVFDLRN 212 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-c-cchhheeehhcc
Confidence 45688888 333444444433333489999999999999999998885 5 347777777653
No 272
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=75.72 E-value=3.6 Score=39.84 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhc--------CCeeEEecCcHHHHHHHHHHHHHC----CCCCCcEEE
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSN----PHISELIEI 171 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~--------~~~vvgvDis~~Al~~A~~N~~~n----~~l~~rI~~ 171 (414)
+.+|+|+|.|+|.++.-+...+. ..+++-+|+|+...+.-++.+... ..+..+|.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w 86 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW 86 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch
Confidence 47999999999999887766432 358999999999988888887542 113445666
No 273
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=75.02 E-value=1 Score=45.58 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=49.7
Q ss_pred CeEEEECCcccHHHH-HHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCC
Q 015035 117 VKGFDIGTGANCIYP-LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTP 181 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i-~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p 181 (414)
..|+|+=.|-|...+ .|.. .....|+|.|.+|.+++.-++|++.|+ ..++-.++.+|.....|
T Consensus 196 eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R~~~~ 259 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNRNPKP 259 (351)
T ss_pred chhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhccccccCc
Confidence 578999999997665 3332 234589999999999999999999996 88888888888654444
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=73.98 E-value=3.1 Score=44.70 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=42.6
Q ss_pred EEEecCC-CeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEE---ecCcHHH
Q 015035 76 NWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVG---SDMTDVA 151 (414)
Q Consensus 76 ~~~vp~g-vLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvg---vDis~~A 151 (414)
.|.+|-| ...|. +-..|++.|.+++.... .++.-..+||+|||+|..+..|..+ +...+. -|..+..
T Consensus 84 ~~~FPgggt~F~~--Ga~~Yid~i~~~~~~~~-----~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 84 KFRFPGGGTMFPH--GADHYIDQIAEMIPLIK-----WGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQ 154 (506)
T ss_pred EEEeCCCCccccC--CHHHHHHHHHHHhhccc-----cCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchh
Confidence 3555543 33342 34689998988886521 1233357899999999999887753 332222 2444445
Q ss_pred HHHHH
Q 015035 152 LEWAE 156 (414)
Q Consensus 152 l~~A~ 156 (414)
++.|.
T Consensus 155 vqfal 159 (506)
T PF03141_consen 155 VQFAL 159 (506)
T ss_pred hhhhh
Confidence 55553
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=73.90 E-value=11 Score=36.83 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=36.9
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHH---HHHHHCCCC----CCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE---KNVKSNPHI----SELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~---~N~~~n~~l----~~rI~~~~~d~~ 177 (414)
.+|||.=+|-|.=++.++. .+.+|+++|.||....+.+ +++...... ..||+++++|..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~--~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS--LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp --EEETT-TTSHHHHHHHH--HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred CEEEECCCcchHHHHHHHc--cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 4899999999999988875 3779999999997665544 334333212 258999998854
No 276
>PRK10458 DNA cytosine methylase; Provisional
Probab=71.08 E-value=15 Score=39.31 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHH
Q 015035 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~ 159 (414)
..-+..+.+++.... .. ......+++|+-||.|.+...+- ..+. .+.++|+++.|.+.=+.|.
T Consensus 67 ~~~~~~~~~~~~~~~--~~-~~~~~~~~iDLFsGiGGl~lGfe--~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 67 EAEFAHLQTLLPKPP--AH-HPHYAFRFIDLFAGIGGIRRGFE--AIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred HHHHHHHHHhcccCc--cc-CcCCCceEEEeCcCccHHHHHHH--HcCCEEEEEEechHHHHHHHHHHc
Confidence 344455666665421 11 12345799999999998776553 3355 4578999999998888875
No 277
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=69.45 E-value=10 Score=35.22 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=40.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++..+ .+++|++++.++..+..+...+...+ .++.++..|..
T Consensus 7 ~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 65 (251)
T PRK12826 7 RVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVR 65 (251)
T ss_pred CEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 46887775 577887777654 37899999999877766666555442 35788888754
No 278
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.93 E-value=13 Score=35.03 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=42.4
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.| |+|.|+..+++++ .+++|++++.++..++.....++..+ .++.++..|..
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~ 69 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVT 69 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCC
Confidence 35788888 4677888888765 47899999999988776666665432 35777777754
No 279
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=68.29 E-value=2 Score=41.51 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcCCcE-E--EecCCCeeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHh
Q 015035 61 TRELTRVLLLHDHGLN-W--WIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL 137 (414)
Q Consensus 61 ~r~Lt~~LL~~~fgl~-~--~vp~gvLiPriP~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~ 137 (414)
.+.|.+.+|.-||... + .+..|...--.| +....+|......+ +..+.++||||.|.|-|...++-.+
T Consensus 64 ~h~l~~sils~fms~TdING~lgrGsMFifSe------~QF~klL~i~~p~w---~~~~~~lLDlGAGdGeit~~m~p~f 134 (288)
T KOG3987|consen 64 WHALARSILSFFMSQTDINGFLGRGSMFIFSE------EQFRKLLVIGGPAW---GQEPVTLLDLGAGDGEITLRMAPTF 134 (288)
T ss_pred HHHHHHHHHHHHhhhhccccccccCceEEecH------HHHHHHHhcCCCcc---CCCCeeEEeccCCCcchhhhhcchH
Confidence 4667777776666442 2 233333211111 22334444321111 2345799999999999998877544
Q ss_pred cCCeeEEecCcHHHHHHHH
Q 015035 138 LGWSFVGSDMTDVALEWAE 156 (414)
Q Consensus 138 ~~~~vvgvDis~~Al~~A~ 156 (414)
. +|+|+|.|..+...-+
T Consensus 135 e--evyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 135 E--EVYATELSWTMRDRLK 151 (288)
T ss_pred H--HHHHHHhhHHHHHHHh
Confidence 3 6899999999876543
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.17 E-value=23 Score=39.15 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEecCCCeeEEEEEE
Q 015035 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (414)
Q Consensus 280 ~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (414)
.+++..|.+ +..+++-+++ ++....|+.-|.+.||...++..+ |+++-|.+|+
T Consensus 186 ~~~~~~l~~----~~~~~~~~~t----~t~a~~vr~~l~~~GF~v~~~~~~--g~kr~~~~~~ 238 (662)
T PRK01747 186 PNLFNALAR----LARPGATLAT----FTSAGFVRRGLQEAGFTVRKVKGF--GRKREMLVGE 238 (662)
T ss_pred HHHHHHHHH----HhCCCCEEEE----eehHHHHHHHHHHcCCeeeecCCC--chhhhhhheh
Confidence 456666544 4555665543 467899999999999975444322 4444455554
No 281
>PRK07576 short chain dehydrogenase; Provisional
Probab=68.17 E-value=11 Score=35.92 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=39.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..+++.+ .+++|++++.+++.++.....+...+ .++.++..|..
T Consensus 10 k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 68 (264)
T PRK07576 10 KNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVR 68 (264)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCC
Confidence 5788888 5677888777654 47899999999887665544444322 35677777754
No 282
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=67.49 E-value=5.3 Score=39.26 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=34.1
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
..++|||||-|.+...|..+.- -+++-+|.|..+++.++.-
T Consensus 74 p~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred cceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc
Confidence 4799999999999998876542 3789999999999988653
No 283
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.68 E-value=12 Score=35.26 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=41.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|=.|+++| |+..++.++ .+++|+.++.+++.++.....++..+ .++.++..|..
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVS 68 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 357888887654 777777654 47899999999988877666665442 35777777754
No 284
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=66.21 E-value=11 Score=39.63 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=34.3
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
..++|+|.|-|-++-.|+- ..+..|.|+|-|..+.+.|++-
T Consensus 155 ~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHHH
Confidence 4799999999999987765 4678999999998888777654
No 285
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.17 E-value=2.9 Score=44.66 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
+...++|=+|-|+|.+..-|-..+|..+++|++++|++++.|+.+...-
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~ 342 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM 342 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh
Confidence 4457899999999998887777788899999999999999999997543
No 286
>PRK05854 short chain dehydrogenase; Provisional
Probab=65.13 E-value=17 Score=35.96 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=41.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+++| |+..++..+ .+++|+.+..+.+.++-+...+.... -..++.++..|..
T Consensus 15 k~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 75 (313)
T PRK05854 15 KRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLS 75 (313)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCC
Confidence 56777777655 777777654 47899999999887776666654431 2246888888864
No 287
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=62.81 E-value=12 Score=37.80 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~-~vvgvDis~~Al~~A~~N~~ 160 (414)
..+++|+.||.|.+.+-+.. -+. -+.++||++.|++.=+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~--agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE--AGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHh--cCCeEEEEEecCHHHHHHHHHhCC
Confidence 36899999999988755543 333 46789999999988887754
No 288
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=61.94 E-value=4.2 Score=40.13 Aligned_cols=43 Identities=30% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~ 159 (414)
..++||||||+-.. .+|.....--+|+.+|..+..++..++=+
T Consensus 57 g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 57 GETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 45899999999644 44433222237999999999987665544
No 289
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.55 E-value=11 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=30.9
Q ss_pred EEEECCcccHHHHHHHHHhcCCee-EEecCcHHHHHHHHHHH
Q 015035 119 GFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV 159 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~~~~~~~v-vgvDis~~Al~~A~~N~ 159 (414)
++|+-||.|.+..-+- ..+.++ .++|+++.|.+.-+.|.
T Consensus 1 vidLF~G~GG~~~Gl~--~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFE--QAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHH--HcCCeEEEEEeCCHHHHHHHHHhC
Confidence 5899999998875554 445665 57999999999988885
No 290
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=61.00 E-value=13 Score=33.93 Aligned_cols=75 Identities=8% Similarity=0.064 Sum_probs=39.9
Q ss_pred EEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCcEEEEEeCCcCCHH-HHHHHHHHc
Q 015035 242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK-FLISKLRKV 320 (414)
Q Consensus 242 fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~w~t~mvgk~~~l~-~l~~~l~~~ 320 (414)
.|+|++=|||.-...... .....+.+- ...=+.+...++.++.++++++|.+.+.++...... .+..+++..
T Consensus 1 VdliitDPPY~~~~~~~~------~~~~~~~~~-~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNN------YFDYGDNKN-HEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIF 73 (231)
T ss_dssp EEEEEE---TSSSCS-----------CSCHCCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcch------hhhccCCCC-HHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHh
Confidence 589999999987544100 000000000 001256788899999999999999988888444332 344444445
Q ss_pred C-Cc
Q 015035 321 G-VT 323 (414)
Q Consensus 321 g-~~ 323 (414)
| +.
T Consensus 74 g~~~ 77 (231)
T PF01555_consen 74 GGFF 77 (231)
T ss_dssp TT-E
T ss_pred hhhh
Confidence 6 53
No 291
>PTZ00357 methyltransferase; Provisional
Probab=59.56 E-value=29 Score=39.24 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=41.0
Q ss_pred CeEEEECCcccHHHHHHHH--Hh--cCCeeEEecCcHHHHHHHHHHHHHCCCC-------CCcEEEEEccCCC
Q 015035 117 VKGFDIGTGANCIYPLLGA--SL--LGWSFVGSDMTDVALEWAEKNVKSNPHI-------SELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~--~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l-------~~rI~~~~~d~~~ 178 (414)
..|+=+|+|-|-+--...+ +. -..+|+|||.++.++.+...+...+... .++|+++..|.+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 5689999999975432221 11 2468999999977666665554322123 4579999999764
No 292
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=59.45 E-value=18 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.065 Sum_probs=38.8
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|.+ |.|+..++.++ .+++|+.++.+++.++.+...++.. .++.++..|..
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY----GEVYAVKADLS 58 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCC
Confidence 46667755 45887777765 4789999999998887766665433 24677777754
No 293
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=58.87 E-value=36 Score=33.92 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred CcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 015035 90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (414)
Q Consensus 90 ~R~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~ 159 (414)
+|......|.+.|.... +.......+.+||--|||-|-++--+|.+ +..+.|.|.|--|+-..+--.
T Consensus 32 ER~~~~~~I~~~L~~~~-p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 32 ERDPCYSPILDELESLF-PPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred HHHHHHHHHHHHHHHhh-cccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHH
Confidence 45555555555554421 11112234579999999999999999975 779999999999987766644
No 294
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=58.74 E-value=16 Score=37.66 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=44.7
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCc
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPS 182 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~ 182 (414)
...+|+|-|.|.+.-.+...+|. +-+++.|...+-.++.+.. .+ |+-+-+|..+.+|.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~~P~ 236 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQDTPK 236 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccccCCC
Confidence 47899999999999888886664 7888888888877777765 32 66677787766665
No 295
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.34 E-value=20 Score=33.85 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=40.5
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+++| |+..++.++ .+++|+.++.+++.++-+.+.++..+ ..+..+..|..
T Consensus 6 k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~ 64 (227)
T PRK08862 6 SIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDF 64 (227)
T ss_pred eEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCC
Confidence 57888888887 566666654 57899999999998877666665543 34556666643
No 296
>PRK05599 hypothetical protein; Provisional
Probab=58.26 E-value=23 Score=33.47 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.0
Q ss_pred eEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+|=.|.++| |+..++..+ .+++|+.++.+++.++.+.+.++..+ .+++.++..|..
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~ 59 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQ 59 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccC
Confidence 3566677655 677766643 37899999999988877666665543 235777788764
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=57.71 E-value=12 Score=38.38 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred EEEecCCCeeCCCCCcHhHHHHHHHHHccC-----CCCCCCCCCCCCeEEEECC-cccHHHHHHHHHhcCCeeEEecCcH
Q 015035 76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN-----IIPTTSRNGDKVKGFDIGT-GANCIYPLLGASLLGWSFVGSDMTD 149 (414)
Q Consensus 76 ~~~vp~gvLiPriP~R~~yi~~i~dll~~~-----~~~~~~~~~~~~~vLDIGt-GsG~I~i~La~~~~~~~vvgvDis~ 149 (414)
..-||+..+++- |..+++.. ++=++... .+.. ..-....+|+=+|+ |.|.+++.+|+..- ++|+++|+++
T Consensus 125 yv~v~~~~~~~i-P~~~d~~~-aApllCaGiT~y~alk~-~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~ 200 (339)
T COG1064 125 YVVVPARYVVKI-PEGLDLAE-AAPLLCAGITTYRALKK-ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSE 200 (339)
T ss_pred EEEEchHHeEEC-CCCCChhh-hhhhhcCeeeEeeehhh-cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCCh
Confidence 467777777775 55666543 33333221 0100 01112345555555 56668888887654 8999999999
Q ss_pred HHHHHHHHH
Q 015035 150 VALEWAEKN 158 (414)
Q Consensus 150 ~Al~~A~~N 158 (414)
+-++.|++-
T Consensus 201 ~K~e~a~~l 209 (339)
T COG1064 201 EKLELAKKL 209 (339)
T ss_pred HHHHHHHHh
Confidence 999998765
No 298
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.59 E-value=27 Score=32.68 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=39.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+++| |+..++..+ .+++|++++.++..++...+.+...+ .++.+++.|..
T Consensus 9 k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 67 (252)
T PRK07035 9 KIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG---GKAEALACHIG 67 (252)
T ss_pred CEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 46777776644 777776654 47899999999887776655554432 34677777754
No 299
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=57.50 E-value=20 Score=37.42 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=32.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
..+||-| |++||-.+.++...| .+|+|||+||.-+.+.+--+.
T Consensus 36 ~d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 36 DDRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 3579999 666888777766555 499999999988777655543
No 300
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.34 E-value=18 Score=36.64 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=44.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+..||==|.|+| ++-++|.++ .+.+++..||+++..+...+.++.+| ++..+..|..
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis 96 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDIS 96 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCC
Confidence 3457888898888 666666544 36789999999999988888888763 6788888864
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=56.50 E-value=39 Score=35.15 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh--------cCCeeEEecCcHHHHHHHHHHHHHC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--------LGWSFVGSDMTDVALEWAEKNVKSN 162 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--------~~~~vvgvDis~~Al~~A~~N~~~n 162 (414)
+..+++||.|.|.++.-++... ...++.-+|+|++..+.=+++.+..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4689999999999987765532 2579999999999988888887654
No 302
>PRK07478 short chain dehydrogenase; Provisional
Probab=56.40 E-value=25 Score=32.99 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=40.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..++..+ .+++|+.++.++..++.+...++..+ .++.++..|..
T Consensus 7 k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 467766665 45777777654 47899999999988877666665443 35777777754
No 303
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=55.72 E-value=4 Score=26.89 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=7.0
Q ss_pred CCCCCCCC
Q 015035 16 IHPKNKYS 23 (414)
Q Consensus 16 mHprN~y~ 23 (414)
.||||+|-
T Consensus 4 ~hprNrYV 11 (28)
T PF12368_consen 4 VHPRNRYV 11 (28)
T ss_pred cCcchhhH
Confidence 69999995
No 304
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.27 E-value=25 Score=36.19 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCeEEEECCcccHH-HHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCI-YPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGsG~I-~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
..++|=+|+|.=.+ ..+.|+.+-..+|+.+|+++..|+.|++
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 45899999997444 4444555556799999999999999988
No 305
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=55.10 E-value=25 Score=35.77 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=33.2
Q ss_pred CCeEEEECCcc-cHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 015035 116 KVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (414)
Q Consensus 116 ~~~vLDIGtGs-G~I~i~La~~~~~~~vvgvDis~~Al~~A~~N 158 (414)
..+||.+|+|+ |.+.+.+|+.....+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 35899999887 76777777765433699999999988888764
No 306
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=54.77 E-value=1.1e+02 Score=32.95 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.9
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH-HHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK-NVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~-N~~~n~~l~~rI~~~~~d~ 176 (414)
.++|-+|||..-++..+-+-.. -.|+-+|+|+.+++.... |++.+. -+.+...|.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~~~----~~~~~~~d~ 105 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKERP----EMQMVEMDM 105 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccCCc----ceEEEEecc
Confidence 4899999999988877655332 378999999999987754 443332 355655553
No 307
>PRK08303 short chain dehydrogenase; Provisional
Probab=53.97 E-value=25 Score=34.84 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=37.7
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcH----------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD----------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~----------~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|-.|+++| |+..++..+ .+++|+.++.+. +.++.+.+.++..+ .++.+++.|..
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~ 77 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG---GRGIAVQVDHL 77 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC---CceEEEEcCCC
Confidence 357888897766 777777665 578999998873 34444444444332 35677778764
No 308
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.60 E-value=70 Score=29.96 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=42.2
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+ +|.|+..++..+ .+++|+.++.+++.++.....++..+ .++.++..|..
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 70 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIA 70 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 457888885 566787777654 47899999999888776666665543 35788888864
No 309
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.54 E-value=61 Score=30.16 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=40.2
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
+++=.| |+|.|+..++.++ .+++|++++.++..++...+++...+ ..++.++..|..
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~ 61 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--AVAVSTHELDIL 61 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEecCCC
Confidence 577777 4566887777765 37899999999987765555554432 347888888864
No 310
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=53.30 E-value=1.5e+02 Score=29.04 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=39.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+.+||-||..||.--..++.-. +.-.|+|||.++.+.+---.-+++-+ +|-.+..|..
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr 132 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDAR 132 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TT
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCC
Confidence 34699999999998877777643 35689999999977654443333332 3666666643
No 311
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=53.29 E-value=9.1 Score=38.34 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=28.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~ 153 (414)
...+|||+|||+|.-++...... ...+...|.+.+.++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 34699999999998776655432 268889999888773
No 312
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=52.57 E-value=79 Score=29.72 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=42.8
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..++.++ .+++|+.++.++..++.+...+...+ .++.++..|..
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~ 71 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVA 71 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 5788888 6778998888765 47899999999888777666665442 46778888864
No 313
>PRK06172 short chain dehydrogenase; Provisional
Probab=52.55 E-value=73 Score=29.78 Aligned_cols=58 Identities=14% Similarity=-0.033 Sum_probs=42.5
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+ +|.|+..++.++ .+++|+.++.+++.++.+.+.++..+ .++.++..|..
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 66 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG---GEALFVACDVT 66 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 357888886 456787777654 36899999999988776666665442 46888888865
No 314
>PRK06125 short chain dehydrogenase; Provisional
Probab=51.67 E-value=53 Score=30.98 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=40.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..++..+ .+++|++++.+++.++.+...+... ...++.++..|..
T Consensus 8 k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~ 67 (259)
T PRK06125 8 KRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA--HGVDVAVHALDLS 67 (259)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCC
Confidence 577888865 44777776654 4789999999988777666665543 1346778877754
No 315
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.48 E-value=84 Score=29.06 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=41.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++..+ .+++|++++.++..++.....++.. ..++.++..|..
T Consensus 8 ~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (239)
T PRK07666 8 KNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY---GVKVVIATADVS 66 (239)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCeEEEEECCCC
Confidence 46888884 677888887764 4789999999988776555555433 246888888864
No 316
>PRK07063 short chain dehydrogenase; Provisional
Probab=51.31 E-value=83 Score=29.57 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=42.5
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|++ |.|+..++..+ .+++|+.++.+++.++...+.+...+ ...++.++..|..
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~ 68 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-AGARVLAVPADVT 68 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCC
Confidence 3578888875 45777777654 47899999999988877666665421 2346888888864
No 317
>PRK07814 short chain dehydrogenase; Provisional
Probab=51.18 E-value=77 Score=30.06 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=41.6
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|. +|.|+..++..+ .+++|++++.+++.++...+.++.. ..++.++..|..
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 69 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA---GRRAHVVAADLA 69 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 357888885 566888877654 4789999999988776665555433 246788888864
No 318
>PRK08589 short chain dehydrogenase; Validated
Probab=50.51 E-value=39 Score=32.42 Aligned_cols=56 Identities=21% Similarity=0.134 Sum_probs=36.3
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+++| |+..++..+ .+++|++++.+ ..++...+.++..+ .++.++..|..
T Consensus 7 k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~ 64 (272)
T PRK08589 7 KVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDIS 64 (272)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecC
Confidence 46777777655 777777654 47899999999 44443334444332 35778888764
No 319
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=49.54 E-value=41 Score=33.18 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|.. |.|+..+++.+ .+++|+.++.+++.++.+.+.+... ..++.++..|..
T Consensus 6 ~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 65 (322)
T PRK07453 6 KGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP---PDSYTIIHIDLG 65 (322)
T ss_pred CCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc---CCceEEEEecCC
Confidence 3467777754 56887777654 4789999999887766555444322 246788888764
No 320
>PRK07791 short chain dehydrogenase; Provisional
Probab=49.41 E-value=35 Score=33.23 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=36.8
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcH---------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD---------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~---------~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+++| |+..++.++ .+++++.+|.+. +.++.+...++..+ .++.++..|..
T Consensus 7 k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~ 74 (286)
T PRK07791 7 RVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG---GEAVANGDDIA 74 (286)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC---CceEEEeCCCC
Confidence 57888887655 777777654 478899888765 55544444444332 35677777754
No 321
>PRK08339 short chain dehydrogenase; Provisional
Probab=49.14 E-value=84 Score=30.00 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+|=.|.++| |+..++.++ .+++|+.++.+++.++.+.+.++.. ...++.++..|..+
T Consensus 9 k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 9 KLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLTK 69 (263)
T ss_pred CEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCC
Confidence 46777776655 777777654 4789999999998887766665443 12468888888653
No 322
>PRK06914 short chain dehydrogenase; Provisional
Probab=47.96 E-value=93 Score=29.61 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+|=.|+ +|.|+..++..+ .+++|++++.+++.++.....+...+ ...++.++..|..+
T Consensus 4 k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d 65 (280)
T PRK06914 4 KIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN-LQQNIKVQQLDVTD 65 (280)
T ss_pred CEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceeEEecCCCC
Confidence 35777774 455777776643 47899999998887766555444432 34578888888643
No 323
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=47.95 E-value=49 Score=31.33 Aligned_cols=58 Identities=5% Similarity=-0.134 Sum_probs=36.3
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEec-CcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvD-is~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+++| |+..++.++ .+++|+.+. .+++.++...+.++.. ...++.++..|..
T Consensus 9 k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~ 69 (260)
T PRK08416 9 KTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK--YGIKAKAYPLNIL 69 (260)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh--cCCceEEEEcCCC
Confidence 46777776655 777776654 478888774 4566555444444332 2346788888864
No 324
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=47.91 E-value=38 Score=32.03 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=35.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|-.|+++ .|+..+++++ .+++|++++.+.. +.+.+.++.. ..++.++..|..
T Consensus 8 ~k~~lItGas~-gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 65 (251)
T PRK12481 8 GKVAIITGCNT-GLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL---GRKFHFITADLI 65 (251)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc---CCeEEEEEeCCC
Confidence 35789888655 4777777654 5789999887642 2222333332 346788888864
No 325
>PRK06949 short chain dehydrogenase; Provisional
Probab=47.81 E-value=1e+02 Score=28.81 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=41.8
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.| |+|.|+..++..+ .+++|++++.+++.++.....+...+ .++.++..|..
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG---GAAHVVSLDVT 68 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCC
Confidence 35788888 5667888887765 47899999999988776666554332 35778888754
No 326
>PRK06940 short chain dehydrogenase; Provisional
Probab=47.64 E-value=55 Score=31.57 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=37.1
Q ss_pred eEEEECCcccHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+|=-|+ |.|+..++..+ .+++|+++|.+++.++.+.+.++..+ .++.++..|..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~ 59 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVS 59 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecC
Confidence 3444454 56988888765 36899999999887765555444332 36778888864
No 327
>PRK07326 short chain dehydrogenase; Provisional
Probab=47.55 E-value=91 Score=28.67 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=40.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=+|. +|-|+..++..+ .+++|++++.++..++.....+... .++.++..|..
T Consensus 7 ~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~ 64 (237)
T PRK07326 7 KVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVR 64 (237)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCC
Confidence 57888884 677888887654 3789999999988776555544321 35788888754
No 328
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=47.31 E-value=39 Score=34.54 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCeEEEECCcccH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 115 ~~~~vLDIGtGsG~-I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
.+-+|+-||+| || +...|+ +.| .+|+.||+++.-+++-+-.++
T Consensus 63 ~ghrivtigSG-Gcn~L~yls-r~P-a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSG-GCNMLAYLS-RAP-ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCC-cchHHHHhh-cCC-ceeEEEeCCHHHHHHHHHHHH
Confidence 44689999999 55 544444 345 599999999998877666554
No 329
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=47.28 E-value=43 Score=34.68 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCCCeEEEECCcccHHHHHHHHHh-------cCCeeEEecC----cHHHHHHHHHHHH
Q 015035 114 GDKVKGFDIGTGANCIYPLLGASL-------LGWSFVGSDM----TDVALEWAEKNVK 160 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~~~-------~~~~vvgvDi----s~~Al~~A~~N~~ 160 (414)
.+.+.|+|+|.|.|.-++.|.+.+ |..++||++. +...++.+.+++.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 466899999999999887765532 4479999999 8889988888754
No 330
>PRK07454 short chain dehydrogenase; Provisional
Probab=46.92 E-value=1.2e+02 Score=28.13 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=40.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++.++ .+++|++++.++..++.....++.. ..++.++..|..
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 65 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST---GVKAAAYSIDLS 65 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC---CCcEEEEEccCC
Confidence 46888884 677888877765 4689999999987765554444332 346888888864
No 331
>PRK08251 short chain dehydrogenase; Provisional
Probab=46.75 E-value=1e+02 Score=28.60 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=41.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..++.++ .+++|+.++.++..++.....+.... -..++.++..|..
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-PGIKVAVAALDVN 63 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEcCCC
Confidence 3677777 4677888887765 36799999999988776655544321 2346888888864
No 332
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=46.60 E-value=1.2e+02 Score=29.38 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=46.3
Q ss_pred CCCeEEEECCccc----HHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 015035 115 DKVKGFDIGTGAN----CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (414)
Q Consensus 115 ~~~~vLDIGtGsG----~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d 175 (414)
+...+++.+++.| .|+++.|++.-+-+++.+-.+++.+...++.+...+ +.+.++|+.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~ 104 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGE 104 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecC
Confidence 3457899976544 456666777778899999999999888888887775 77778888765
No 333
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=46.46 E-value=91 Score=29.40 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=39.5
Q ss_pred eEEEECCcccHHHHHHHHHh------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~------~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+|-.|+++| |+..++.++ .+++|+.++.++..++.+.+.++... -..++.++..|..
T Consensus 2 ~vlItGas~G-IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 65 (256)
T TIGR01500 2 VCLVTGASRG-FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER-SGLRVVRVSLDLG 65 (256)
T ss_pred EEEEecCCCc-hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC-CCceEEEEEeccC
Confidence 3566776654 666666543 57899999999988887776665421 1235788888864
No 334
>PRK05872 short chain dehydrogenase; Provisional
Probab=46.08 E-value=37 Score=33.19 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|.++ .|+..++..+ .+++|+.++.+++.++...+.+.. ..++..+..|..
T Consensus 9 gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~----~~~~~~~~~Dv~ 67 (296)
T PRK05872 9 GKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGG----DDRVLTVVADVT 67 (296)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----CCcEEEEEecCC
Confidence 35788887654 4777777654 478999999998877654443321 234555556654
No 335
>PRK07677 short chain dehydrogenase; Provisional
Probab=45.34 E-value=1.1e+02 Score=28.68 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=39.1
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|+++| |+..++..+ .+++|++++.++..++.+...+...+ .++.++..|..
T Consensus 3 ~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 60 (252)
T PRK07677 3 VVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVR 60 (252)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCC
Confidence 5777777655 777666654 47899999999887766655554332 46888888864
No 336
>PRK06197 short chain dehydrogenase; Provisional
Probab=44.77 E-value=35 Score=33.30 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=40.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+ +|.|+..++..+ .+++|+.++.+++..+.+.+.+.... -..++.++..|..
T Consensus 16 ~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 77 (306)
T PRK06197 16 GRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-PGADVTLQELDLT 77 (306)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEECCCC
Confidence 356776665 466888877654 47899999998887766655554321 1246788888864
No 337
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.49 E-value=1.2e+02 Score=28.51 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=38.6
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|+ +|.|+..++..+ .+++|++++.++..++.+...+...+ .++.++..|..
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 60 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVS 60 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 5676664 456887776643 46899999999887776655554432 46778888764
No 338
>PRK08226 short chain dehydrogenase; Provisional
Probab=44.10 E-value=52 Score=30.96 Aligned_cols=57 Identities=11% Similarity=-0.022 Sum_probs=37.4
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+. |.|+..++..+ .+++|+.++.++...+.+.+- ... ..++.++..|..
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~---~~~~~~~~~Dl~ 64 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGR---GHRCTAVVADVR 64 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHh---CCceEEEECCCC
Confidence 3578888875 55777777654 478999999988654444333 222 235777788764
No 339
>PRK12743 oxidoreductase; Provisional
Probab=43.17 E-value=62 Score=30.52 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=37.9
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEec-CcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvD-is~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..+++.+ .+++|+.++ .+...++.+...++.++ .++.++..|..
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 62 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLS 62 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 36788885 455888888765 478888774 45566655555555443 46888888864
No 340
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.11 E-value=41 Score=32.03 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|=.|.++ +-|+..++.++ .+++|+.++.+.+..+.+++-.+..+ .+.++..|..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~ 70 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD----APIFLPLDVR 70 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc----cceEEecCcC
Confidence 35788888887 37888887765 47899999998765443433333221 2345666653
No 341
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=42.21 E-value=12 Score=38.31 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.6
Q ss_pred cEEEEEECCCcc
Q 015035 241 QFDFCICNPPFF 252 (414)
Q Consensus 241 ~fD~imcNPPy~ 252 (414)
..|+||+||||-
T Consensus 135 eADIVVTNPPFS 146 (336)
T PF13651_consen 135 EADIVVTNPPFS 146 (336)
T ss_pred cCCEEEeCCCcH
Confidence 479999999994
No 342
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=41.52 E-value=1.4e+02 Score=27.91 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=39.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..++..+ .+++++.+|.++..++.....+.... -..++.++..|..
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEGMAYGFGADAT 63 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCceeEEEEccCC
Confidence 3678888 4567887777654 47899999999877755444443221 1135788888864
No 343
>PRK05855 short chain dehydrogenase; Validated
Probab=41.18 E-value=35 Score=35.96 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=+|. +|.|+..++.++ .+++|+.++.+...++.+...++..+ .++.++..|..
T Consensus 316 ~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 374 (582)
T PRK05855 316 KLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVS 374 (582)
T ss_pred CEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 46776665 566888887765 47899999999988776666655443 36888888864
No 344
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.13 E-value=1.5e+02 Score=27.34 Aligned_cols=57 Identities=14% Similarity=-0.025 Sum_probs=40.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++..+ .+++|+.+|.++..++.+...++..+ .++.+++.|..
T Consensus 6 ~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 64 (253)
T PRK08217 6 KVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVT 64 (253)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 47887775 566888777654 36899999999887776666555432 46778888754
No 345
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=40.38 E-value=1.2e+02 Score=28.23 Aligned_cols=59 Identities=14% Similarity=-0.002 Sum_probs=40.8
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.| |+|.|+..+++.+ .+++|+++|.+++.++.....++..+ ..++.++..|..
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~d~~ 72 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GPQPAIIPLDLL 72 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEeccc
Confidence 35788888 4677888777654 47899999999887766555555442 235667766653
No 346
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.26 E-value=45 Score=27.50 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 124 TGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 124 tGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
||.|-++..++..+ .++.++.+|.+++.++.++. .+ +.++.+|..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~ 50 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDAT 50 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc-----cccccccch
Confidence 56667777777654 34589999999998766642 22 567778753
No 347
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=40.18 E-value=37 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh-cCCeeEEecCcH
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTD 149 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-~~~~vvgvDis~ 149 (414)
..+|||+||-.|.-.-..-++. |+-.|.|||+..
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 4689999999998765444444 777899999853
No 348
>PRK07062 short chain dehydrogenase; Provisional
Probab=40.11 E-value=1.4e+02 Score=28.11 Aligned_cols=60 Identities=15% Similarity=-0.011 Sum_probs=41.4
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...+|=.|+++| |+..++..+ .+++|++++.+++.++.+.+.+.... -..++.++..|..
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 69 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKF-PGARLLAARCDVL 69 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEecCC
Confidence 357888886554 777777665 47899999999988876665554331 1236777888764
No 349
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=40.06 E-value=14 Score=34.71 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCc-ccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 123 GTG-ANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 123 GtG-sG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
|+| ++-|+..+++++ .+++|+.++.+++.++.+.+.+... ...+ ++..|..
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~D~~ 54 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE--YGAE--VIQCDLS 54 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH--TTSE--EEESCTT
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH--cCCc--eEeecCc
Confidence 556 445777777765 4899999999999876555555443 2223 4777754
No 350
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=40.02 E-value=1.6e+02 Score=27.27 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=40.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++.++ .+++|++++.+....+.+...+...+ .++.++..|..
T Consensus 4 ~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~ 62 (250)
T TIGR03206 4 KTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG---GNAQAFACDIT 62 (250)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 46777775 466887777654 36899999999988776666655432 46888888864
No 351
>PRK08643 acetoin reductase; Validated
Probab=39.88 E-value=1.5e+02 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=39.6
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+|=.| |+|.|+..+++.+ .+++|+.++.+++.++.+...+...+ .++.++..|..
T Consensus 4 ~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 61 (256)
T PRK08643 4 VALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVS 61 (256)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 566666 4555888777654 47899999999888777666665432 35778888864
No 352
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=39.30 E-value=44 Score=31.70 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
++.||.+++... ...+++|+=+|+|+++..+.. +..+++.-|+++..+...+.-++
T Consensus 8 l~~~I~~~ip~~---------~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN---------KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S----------S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---------CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHh
Confidence 455676666531 346899999999999876654 56789999999998888774433
No 353
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=39.29 E-value=46 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 125 GANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 125 GsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
|-|..++.+|+... .+|+++|.+++-++.+++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 34667777776554 999999999999888865
No 354
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.22 E-value=59 Score=33.53 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~ 157 (414)
...+.=+|.|+=-++.+.+.+..+ .+++|+||+++-.+.|++
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 457888888876677766666655 599999999999998864
No 355
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=38.76 E-value=1.1e+02 Score=30.19 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=66.8
Q ss_pred EEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccc
Q 015035 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMD 199 (414)
Q Consensus 120 LDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~ 199 (414)
|..=.||=.|+..+.. +.-+++.+|+-+...+.-++|+... .+|.+.+.|...
T Consensus 62 l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~~----~~v~v~~~DG~~--------------------- 114 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRRD----RRVRVHHRDGYE--------------------- 114 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT----S-EEEE-S-HHH---------------------
T ss_pred cCcCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhccC----CccEEEeCchhh---------------------
Confidence 6677888877766653 4569999999999999888887643 479998887431
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCCCcccccCCh
Q 015035 200 MSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGE 279 (414)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe 279 (414)
-+...+.+.++=-+|+.-|||-... |
T Consensus 115 -------------------------------~l~allPP~~rRglVLIDPpYE~~~-----------------------d 140 (245)
T PF04378_consen 115 -------------------------------GLKALLPPPERRGLVLIDPPYEQKD-----------------------D 140 (245)
T ss_dssp -------------------------------HHHHH-S-TTS-EEEEE-----STT-----------------------H
T ss_pred -------------------------------hhhhhCCCCCCCeEEEECCCCCCch-----------------------H
Confidence 1222333456678899999994322 3
Q ss_pred HHHHHHHHHHHHHhhccC---cEEEEEeCCcCCHHHHHHHHHHcCCceEEEEEec
Q 015035 280 RAFITRIIEDSVALKQTF---RWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (414)
Q Consensus 280 ~~Fv~rii~eS~~l~~~~---~w~t~mvgk~~~l~~l~~~l~~~g~~~v~~~e~~ 331 (414)
.+-+...+..+.+--..+ -||-+ +. ......+.+.|++.++.++-..|..
T Consensus 141 y~~v~~~l~~a~kR~~~G~~~iWYPi-~~-~~~~~~~~~~l~~~~~~~~l~~El~ 193 (245)
T PF04378_consen 141 YQRVVDALAKALKRWPTGVYAIWYPI-KD-RERVDRFLRALKALGIKKVLRAELR 193 (245)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEEE-SS-HHHHHHHHHHHHHH-SSE-EEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeec-cc-HHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 333333444443322222 47754 33 4467788888888888766666553
No 356
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=38.05 E-value=77 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=35.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+++ .|+..++..+ .+++|++++.++. +-+.+.++.. ..++.++..|..
T Consensus 6 k~vlItGas~-gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~---~~~~~~~~~D~~ 62 (248)
T TIGR01832 6 KVALVTGANT-GLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL---GRRFLSLTADLS 62 (248)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc---CCceEEEECCCC
Confidence 5788888764 4788877765 4789999998752 2222333322 346788888764
No 357
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=38.00 E-value=1e+02 Score=30.12 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..++|=.| |+|.|+..|+.++ .+++|+++..++...+.+.......+ ...++.++..|..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-AKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-CCCceEEEeCCCCC
Confidence 35788887 6788998888765 36788888777654433221111111 22457777777643
No 358
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=37.86 E-value=1.6e+02 Score=27.78 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=42.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+++| |+..++.++ .+++++.++.+++.++.+..+++..+ .++.++..|..
T Consensus 10 ~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 69 (265)
T PRK07097 10 GKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVT 69 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 357888888765 666666554 47899999999988877777766543 36888888864
No 359
>PRK07904 short chain dehydrogenase; Provisional
Probab=37.85 E-value=1.3e+02 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=41.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHh--c-CCeeEEecCcHHH-HHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASL--L-GWSFVGSDMTDVA-LEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~--~-~~~vvgvDis~~A-l~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+.++|=.|++ |-|+..++.++ . +++|++++.+++. ++.+.+.++..+ ..++.++..|..
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCC
Confidence 44578989985 45888887754 2 4899999998774 665555555442 236888888864
No 360
>PRK06196 oxidoreductase; Provisional
Probab=37.73 E-value=70 Score=31.47 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=36.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++..+ .+++|++++.+++.++.+...+. .+.++..|..
T Consensus 27 k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-------~v~~~~~Dl~ 81 (315)
T PRK06196 27 KTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-------GVEVVMLDLA 81 (315)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-------hCeEEEccCC
Confidence 46887885 466888887764 47899999999876654433321 2567777754
No 361
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.37 E-value=77 Score=31.16 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=36.6
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCc-HHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMT-DVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis-~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|+++| |+..++..+ .+++|+.+|.+ ...++.+...++..+ .++.++..|..
T Consensus 12 ~k~~lVTGas~g-IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dv~ 72 (306)
T PRK07792 12 GKVAVVTGAAAG-LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG---AKAVAVAGDIS 72 (306)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC---CeEEEEeCCCC
Confidence 457888887755 677766654 47899999875 334444434444332 46777877754
No 362
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.29 E-value=1.2e+02 Score=28.23 Aligned_cols=57 Identities=19% Similarity=0.073 Sum_probs=41.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++..+ .+++|++++.++..++.+...++..+ .++.++..|..
T Consensus 5 ~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 63 (258)
T PRK12429 5 KVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVT 63 (258)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 35665554 677888888765 47899999999988877666665442 46888888864
No 363
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=37.27 E-value=62 Score=35.53 Aligned_cols=60 Identities=8% Similarity=-0.071 Sum_probs=42.6
Q ss_pred CCeEEEECCcccHHHHHHHH---H-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGA---S-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~---~-~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
...|+=+|.|-|-+.-...+ . ....+++++|.+|.|+-.-+. .+... .+++|+++..|.+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR 431 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMR 431 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEecccc
Confidence 35678999999977644322 1 236799999999999876543 43332 5689999988864
No 364
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=37.23 E-value=98 Score=28.43 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=27.2
Q ss_pred EEEECCcccHHHHHHHH--HhcCCeeEEecCcHHHHHHHHHHHHH
Q 015035 119 GFDIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEWAEKNVKS 161 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~--~~~~~~vvgvDis~~Al~~A~~N~~~ 161 (414)
|.=||+|. ++..+|. ...+.+|+.+|.++++++.+++.++.
T Consensus 2 V~ViGaG~--mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGT--MGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCH--HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 33456544 4433333 34589999999999999999888765
No 365
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=37.01 E-value=67 Score=30.28 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=35.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+ +|.|+..+++++ .+++|+++|.+.. +...+.+... ..++..++.|..
T Consensus 11 k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 67 (253)
T PRK08993 11 KVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL---GRRFLSLTADLR 67 (253)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc---CCeEEEEECCCC
Confidence 46788886 456888888765 4789999987643 2222333322 245777777754
No 366
>PRK05875 short chain dehydrogenase; Provisional
Probab=36.94 E-value=1.8e+02 Score=27.53 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=39.9
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..++..+ .+++|++++.+++.++.....+...+ ...++.++..|..
T Consensus 8 k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 68 (276)
T PRK05875 8 RTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-GAGAVRYEPADVT 68 (276)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-CCCceEEEEcCCC
Confidence 578888855 55888887754 47899999998877654444443321 1246788888864
No 367
>PRK09242 tropinone reductase; Provisional
Probab=36.45 E-value=2e+02 Score=26.94 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=41.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..++..+ .+++|+.++.+++.++....++.... -..++.++..|..
T Consensus 10 k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 70 (257)
T PRK09242 10 QTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVS 70 (257)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCC
Confidence 467888775 45777777654 47899999999888777666665431 1346888888864
No 368
>PRK07890 short chain dehydrogenase; Provisional
Probab=36.35 E-value=1.9e+02 Score=26.83 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=40.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++..+ .+++|+.++.++..++.+...+... ..++.++..|..
T Consensus 6 k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (258)
T PRK07890 6 KVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL---GRRALAVPTDIT 64 (258)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEecCCC
Confidence 46787776 455787777654 4789999999988776665555433 246788888864
No 369
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.35 E-value=74 Score=29.95 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=36.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|.++| |+..+++.+ .+++++.++.+ ..++.+.+.+... ..++.++..|..
T Consensus 15 ~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~D~~ 73 (258)
T PRK06935 15 GKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE---GRKVTFVQVDLT 73 (258)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 357888887654 777777654 47899998887 3333333333332 246788888764
No 370
>PRK05876 short chain dehydrogenase; Provisional
Probab=36.19 E-value=1.7e+02 Score=28.22 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=39.8
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ .|+..++..+ .+++|+.+|.++..++.+.+.++..+ .++.++..|..
T Consensus 7 k~vlVTGas~-gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~ 65 (275)
T PRK05876 7 RGAVITGGAS-GIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVR 65 (275)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCC
Confidence 4678777764 4777777654 47899999999888776555554332 35778888864
No 371
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=34.97 E-value=79 Score=34.37 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
.+.+|+=+|+|.=.+..+.+.+..+++|+++|++++.++.|++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3579999999865544444444567799999999999998875
No 372
>PRK05866 short chain dehydrogenase; Provisional
Probab=34.84 E-value=1.8e+02 Score=28.34 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=40.3
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|.+ |.|+..++..+ .+++|++++.+++.++...+.+...+ .++.++..|..
T Consensus 41 k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~ 99 (293)
T PRK05866 41 KRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG---GDAMAVPCDLS 99 (293)
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 568888865 45777777654 47899999999988776666554332 35778888864
No 373
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=34.81 E-value=83 Score=29.71 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=36.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|.+ |.|+..++..+ .+++|+.++.+++.++.... . +..++.+++.|..
T Consensus 7 k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~---~~~~~~~~~~D~~ 62 (263)
T PRK06200 7 QVALITGGG-SGIGRALVERFLAEGARVAVLERSAEKLASLRQ---R---FGDHVLVVEGDVT 62 (263)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---H---hCCcceEEEccCC
Confidence 478888865 45777776654 47899999999876644322 1 2235777777754
No 374
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=34.69 E-value=2.1e+02 Score=26.63 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=40.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++.++ .+++++.++.++..++.....++..+ .++.++..|..
T Consensus 10 k~~lItGa-s~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 68 (254)
T PRK08085 10 KNILITGS-AQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG---IKAHAAPFNVT 68 (254)
T ss_pred CEEEEECC-CChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEecCCC
Confidence 46788884 456888877765 47899999999887766655555432 35777777764
No 375
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=34.65 E-value=86 Score=28.89 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCcccHHHHHHHHHhcCCeeEEecCc
Q 015035 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (414)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis 148 (414)
.+.|+.+.... -.+-|||+|=|.|--|=.|-..+|+-+|+..|-.
T Consensus 17 ~L~~a~~~v~~----------~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 17 CLNWAAAQVAG----------LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHTTT------------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHhcC----------CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 34566655543 2367999999999999999999999999998863
No 376
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=34.44 E-value=27 Score=36.60 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=16.8
Q ss_pred CCCeEEEECCcccHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGA 135 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~ 135 (414)
....|+|+|||+|..++.+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred cceeEEEecCCCCccHHHHHH
Confidence 357899999999988776654
No 377
>PRK06194 hypothetical protein; Provisional
Probab=34.38 E-value=1.2e+02 Score=28.96 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=39.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++.++ .+++|+.+|.+++.++.....+...+ .++.++..|..
T Consensus 7 k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 65 (287)
T PRK06194 7 KVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG---AEVLGVRTDVS 65 (287)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 46776664 466888877654 47899999999887765544444332 35777888864
No 378
>PLN02780 ketoreductase/ oxidoreductase
Probab=33.81 E-value=1.5e+02 Score=29.48 Aligned_cols=59 Identities=17% Similarity=0.025 Sum_probs=40.7
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
+..+|=.|+++ .|+..++.++ .+++|+.++.+++.++...+.++... -..++..+..|.
T Consensus 53 g~~~lITGAs~-GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~-~~~~~~~~~~Dl 113 (320)
T PLN02780 53 GSWALVTGPTD-GIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY-SKTQIKTVVVDF 113 (320)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCcEEEEEEEEC
Confidence 35788888654 4777777654 47899999999999887766665431 123566666665
No 379
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=33.63 E-value=2.3e+02 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=40.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++|=.|++ |.|+..++..+ .+++++.++.+...++.+...++.. ..++.++..|..
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 70 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL---GGQAFACRCDIT 70 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 4689999954 55777777654 4789999999888776655444432 235777788864
No 380
>PLN02253 xanthoxin dehydrogenase
Probab=33.07 E-value=1.7e+02 Score=27.92 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=39.2
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
+.++|=.| |+|.|+..++..+ .+++|+.+|.+++..+.....+. ...++.+++.|..+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d 77 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVTV 77 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecCC
Confidence 35688888 4566888887765 47899999998876654433332 12468888888653
No 381
>PRK06139 short chain dehydrogenase; Provisional
Probab=32.97 E-value=1.8e+02 Score=29.22 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=41.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|++ |.|+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..
T Consensus 8 k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~ 66 (330)
T PRK06139 8 AVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVT 66 (330)
T ss_pred CEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCC
Confidence 467777765 45777777654 47899999999999887777776553 35777777764
No 382
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=32.94 E-value=2.3e+02 Score=26.93 Aligned_cols=57 Identities=16% Similarity=0.019 Sum_probs=39.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ .|+..++.++ .+++|+.++.+++.++...+.++..+ .++.+++.|..
T Consensus 11 k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 69 (278)
T PRK08277 11 KVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG---GEALAVKADVL 69 (278)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 4677677654 4777776654 47899999999887766555554432 46788888864
No 383
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.92 E-value=81 Score=30.07 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=35.2
Q ss_pred CeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ +-|+..+++++ .+++|+.++.+....+..++-.+..+ ..++.++..|..
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~ 69 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVT 69 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCC
Confidence 5788888773 67888887765 47899988765322222222222221 235777777764
No 384
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=32.91 E-value=1.8e+02 Score=26.73 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=35.8
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.| |+|.|+..+++.+ .+++|++++.++. +.+++-.........++.++..|..
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVT 62 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCC
Confidence 567777 5677888887765 3789999998854 2222222221112356888888865
No 385
>PRK08703 short chain dehydrogenase; Provisional
Probab=32.81 E-value=1.7e+02 Score=27.02 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=38.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
.++|=.|+ +|.|+..++..+ .+++|++++.++..++.....+...+ ...+.++..|.
T Consensus 7 k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~ 65 (239)
T PRK08703 7 KTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HPEPFAIRFDL 65 (239)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CCCcceEEeee
Confidence 57888885 566887777654 47899999999987776655554432 12355566664
No 386
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.45 E-value=2.4e+02 Score=25.83 Aligned_cols=56 Identities=16% Similarity=-0.028 Sum_probs=39.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..+++.+ .+++|++++.+++.++.+.+.+... .++.++..|..
T Consensus 6 ~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 63 (238)
T PRK05786 6 KKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVS 63 (238)
T ss_pred cEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCC
Confidence 578889886 56777777654 4789999999988776554444332 24777888764
No 387
>PRK05650 short chain dehydrogenase; Provisional
Probab=32.34 E-value=2.1e+02 Score=27.14 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=39.2
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|+ +|.|+..++..+ .+++|+.++.+++.++.+...++..+ .++.++..|..
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 59 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG---GDGFYQRCDVR 59 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 4666665 556777777654 47899999999888776666655432 45778888764
No 388
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=31.91 E-value=65 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.3
Q ss_pred CCeEEEECCcccHHHHHHHHHh-----cCCeeEEecCcH
Q 015035 116 KVKGFDIGTGANCIYPLLGASL-----LGWSFVGSDMTD 149 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~-----~~~~vvgvDis~ 149 (414)
...++|+|||-|-++-.++... +...++.||...
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3589999999999999888876 457899999854
No 389
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.67 E-value=80 Score=30.12 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CeEEEECC-cccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGT-GANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGt-GsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+ |++-|+..+++++ .+++|+.++.+....+.+++-.+..+ ....++.|..
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~ 66 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD----SELVFRCDVA 66 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC----CceEEECCCC
Confidence 46777776 4667888888765 47899888776554444444333222 2345667754
No 390
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=31.57 E-value=4e+02 Score=24.28 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=47.4
Q ss_pred CCcEEEEEECCCcccccccccCCCccccCCCCCcccccCChHHHHHHHHHHHHHhhccCc-EEEEEeCCcC-CHHHHHHH
Q 015035 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFR-WYTSMVGRKS-NLKFLISK 316 (414)
Q Consensus 239 ~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~~GGe~~Fv~rii~eS~~l~~~~~-w~t~mvgk~~-~l~~l~~~ 316 (414)
..+||.||-|=|..-...+.+ .. -+.. -..++..+++.+..++...| ...++.-.+. +.=.|.++
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~----------~~-~i~~--nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~l 139 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDG----------KR-NIRL--NRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEEL 139 (166)
T ss_pred CCcCCEEEEeCCCCCCCccch----------hH-HHHH--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHH
Confidence 468999999999874111110 00 0000 24577888888888877755 4444443322 44466678
Q ss_pred HHHcCCceEEEEEe
Q 015035 317 LRKVGVTIVKTTEF 330 (414)
Q Consensus 317 l~~~g~~~v~~~e~ 330 (414)
.++.|+..++...|
T Consensus 140 A~~~gl~l~~~~~F 153 (166)
T PF10354_consen 140 AAEAGLVLVRKVPF 153 (166)
T ss_pred HHhcCCEEEEEecC
Confidence 88889876666555
No 391
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=31.27 E-value=2.5e+02 Score=25.95 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=39.0
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.| |+|.|+..++..+ .+++|++++.++...+....-.... ..++.++..|..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 60 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA---GGSVIYLVADVT 60 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 455556 5677888887764 4789999999987766555544433 246888888864
No 392
>PRK06182 short chain dehydrogenase; Validated
Probab=30.87 E-value=82 Score=29.97 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=34.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+ +|.|+..++..+ .+++|++++.+++.++... .. .+.++..|..
T Consensus 4 k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~~-----~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----SL-----GVHPLSLDVT 56 (273)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hC-----CCeEEEeeCC
Confidence 46777775 455888887764 4789999999987664321 12 2567777754
No 393
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.83 E-value=88 Score=30.11 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=33.6
Q ss_pred CeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.|+ +-|+..++.++ .+++|+.++.+....+.+++-.... ..+.++..|..
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 66 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL----GSDIVLPCDVA 66 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc----CCceEeecCCC
Confidence 4677778776 36887777765 4789998888743323332222211 13456667754
No 394
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=30.67 E-value=1.1e+02 Score=32.68 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~~~p~~~~~~~~~~~~ 193 (414)
.+.+|||+|+-.|.=...+|..+.+ -.|+|-|.+..-++.-+.|+.+.| +.+-| +.+.|...
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v~nti-v~n~D~~e--------------- 303 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-VTNTI-VSNYDGRE--------------- 303 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-CCceE-EEccCccc---------------
Confidence 4579999999999766666665543 379999999999999999999986 64433 33444221
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccccccccCCCccccCCCC-Cc
Q 015035 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTP-EE 272 (414)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~-~E 272 (414)
| -.++. .++||=|.---|=--+ .....|...++... .+
T Consensus 304 ----------------------f---------------~~~~~--~~~fDRVLLDAPCSGt--gvi~K~~~vkt~k~~~d 342 (460)
T KOG1122|consen 304 ----------------------F---------------PEKEF--PGSFDRVLLDAPCSGT--GVISKDQSVKTNKTVKD 342 (460)
T ss_pred ----------------------c---------------ccccc--CcccceeeecCCCCCC--cccccccccccchhHHH
Confidence 0 00110 1256655555443211 11122333332221 11
Q ss_pred ccccCChH-HHHHHHHHHHHHhhccCcEE---EEEeCCcCCHHHHHHHHHHc-CCceEEEEEecCCCeeEEEEEEEeccc
Q 015035 273 MVCSGGER-AFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV-GVTIVKTTEFVQGQTCRWGLAWSFVPP 347 (414)
Q Consensus 273 m~~~GGe~-~Fv~rii~eS~~l~~~~~w~---t~mvgk~~~l~~l~~~l~~~-g~~~v~~~e~~qG~t~Rw~lAWsf~~~ 347 (414)
+. .. ..-++|+..+.++.+.+|.+ |+-|--.++-.-+--.|++. .++-+-++-++ |...|+ ..-.|.+.
T Consensus 343 i~----~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~i-G~~G~~-~~~~~~ps 416 (460)
T KOG1122|consen 343 IL----RYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDI-GGEGRF-RGGRFHPS 416 (460)
T ss_pred HH----HhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccC-CCCCcc-cCcccCcc
Confidence 11 11 23355788888888888864 45555566666677778887 45444444444 333322 34555555
Q ss_pred cccc
Q 015035 348 ARKI 351 (414)
Q Consensus 348 ~~~~ 351 (414)
.+..
T Consensus 417 l~~~ 420 (460)
T KOG1122|consen 417 LKLT 420 (460)
T ss_pred hhhe
Confidence 4443
No 395
>PRK07774 short chain dehydrogenase; Provisional
Probab=30.62 E-value=2.7e+02 Score=25.67 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=38.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..++..+ .+.++++++.++..++.....+... ..++.++..|..
T Consensus 7 k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 65 (250)
T PRK07774 7 KVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD---GGTAIAVQVDVS 65 (250)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 4677777 5567888887754 4689999999987765555444432 234667777754
No 396
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.34 E-value=2.5e+02 Score=28.06 Aligned_cols=57 Identities=11% Similarity=-0.058 Sum_probs=41.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|++ |.|+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..
T Consensus 9 k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~ 67 (334)
T PRK07109 9 QVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVA 67 (334)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCC
Confidence 467777754 55777777654 47899999999998887777766543 46788888864
No 397
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.06 E-value=3e+02 Score=25.19 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=40.7
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEe-cCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGS-DMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgv-Dis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
.++|=+| |+|.|+..++..+ .+++++.+ +.++..++.....+... ..++.++..|..+
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~ 66 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE---GGDAIAVKADVSS 66 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc---CCeEEEEECCCCC
Confidence 4677776 4678888877654 47899998 99888776665555543 2468888888653
No 398
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=29.64 E-value=1.1e+02 Score=31.69 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhcC-CeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~-~~vvgvDis~~Al~~A~~ 157 (414)
...+.=+|||.=-++...+.+..+ -+++|+|++++-+++|++
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 357888888865565556555554 489999999999999975
No 399
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.63 E-value=78 Score=29.94 Aligned_cols=55 Identities=15% Similarity=-0.022 Sum_probs=35.3
Q ss_pred CeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ +-|+..++.++ .+++|+.++.+.+..+.+++. . ..++.+++.|..
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~---~~~~~~~~~Dl~ 65 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---V---DEEDLLVECDVA 65 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---c---cCceeEEeCCCC
Confidence 4688888774 56888877765 578999998875433332221 1 134677777764
No 400
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=29.48 E-value=56 Score=33.98 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=38.6
Q ss_pred CeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 015035 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~ 172 (414)
.+++|+|||.|-....++. +....++|+|.++.-+..+..-..... +.++-.++
T Consensus 112 ~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~ 165 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFV 165 (364)
T ss_pred ccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhccee
Confidence 4789999999998877765 667899999999888777665444332 44333333
No 401
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.32 E-value=1.1e+02 Score=29.54 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=34.3
Q ss_pred CeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ +-|+..++.++ .+++|+.++.+.+..+.+++-.+..+ .. .++..|..
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~---~~-~~~~~Dv~ 65 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG---SD-YVYELDVS 65 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC---Cc-eEEEecCC
Confidence 4677777763 45887777765 47899999988643333333333222 22 45667754
No 402
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=28.89 E-value=64 Score=31.71 Aligned_cols=46 Identities=15% Similarity=-0.064 Sum_probs=41.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
+....+|+--|+|.-...+.++.+..++++.|.||.|-++|+...+
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 3467999999999998889999999999999999999999988775
No 403
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=28.78 E-value=1.7e+02 Score=28.40 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~--~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~~ 178 (414)
..+||=.|. +|.|+..|+.++. +.+|++++.++.............+ ...+++++.+|..+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG-AKERLHLFKANLLE 66 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC-CCCceEEEeccccC
Confidence 346766654 7899998887653 6789888877543322222111111 22467777777543
No 404
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=28.49 E-value=1.7e+02 Score=32.38 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCC------CCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNP------HISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~------~l~~rI~~~~~d~~ 177 (414)
+..+|=.|. +|.|+..++.++ .+++|++++.+.+.++....++.... ....++.++.+|..
T Consensus 80 gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 80 EDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 346777765 467888877664 47899999999887765555443321 01135788888764
No 405
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.11 E-value=68 Score=30.49 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=34.8
Q ss_pred CeEEEECCc-ccHHHHHHHHHh--cCCeeEEecCcH--HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTG-ANCIYPLLGASL--LGWSFVGSDMTD--VALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtG-sG~I~i~La~~~--~~~~vvgvDis~--~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.| ++-|+..+++.+ .+++|+.++.+. +.++... +.. ..++.++..|..
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~---~~~---~~~~~~~~~Dv~ 67 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIA---KRL---PEPAPVLELDVT 67 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHH---Hhc---CCCCcEEeCCCC
Confidence 478888885 577888888765 478999998764 3333222 222 224566777754
No 406
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.87 E-value=3.2e+02 Score=25.21 Aligned_cols=56 Identities=18% Similarity=0.052 Sum_probs=39.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+. |.|+..|+..+ .++++++++.+++.++.....+. . ..++.++..|..
T Consensus 6 k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~D~~ 63 (252)
T PRK06138 6 RVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A---GGRAFARQGDVG 63 (252)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c---CCeEEEEEcCCC
Confidence 467778774 66777777654 47899999999877766555554 2 245888888864
No 407
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.77 E-value=1.2e+02 Score=28.15 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEECCcccHHHHHHHH--HhcCCeeEEecCcHHHHHH
Q 015035 119 GFDIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEW 154 (414)
Q Consensus 119 vLDIGtGsG~I~i~La~--~~~~~~vvgvDis~~Al~~ 154 (414)
|-=+|.| -+++.+|. ...+.+|+|+|++++-++.
T Consensus 3 I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~ 38 (185)
T PF03721_consen 3 IAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEA 38 (185)
T ss_dssp EEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHH
T ss_pred EEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHH
Confidence 3345444 45544444 3467899999999986554
No 408
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=27.24 E-value=30 Score=32.11 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.8
Q ss_pred EEEECCCcc
Q 015035 244 FCICNPPFF 252 (414)
Q Consensus 244 ~imcNPPy~ 252 (414)
-|.|||||-
T Consensus 64 ~vf~NPPYS 72 (166)
T TIGR01712 64 AVWLNPPYS 72 (166)
T ss_pred eEEecCCCC
Confidence 599999994
No 409
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=26.67 E-value=2e+02 Score=26.40 Aligned_cols=34 Identities=9% Similarity=-0.228 Sum_probs=24.0
Q ss_pred CCeEEEECCcccHHHHHHHH-HhcCCeeEEecCcHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGA-SLLGWSFVGSDMTDVA 151 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~-~~~~~~vvgvDis~~A 151 (414)
..+|+=|||=|-... |.+ ..++.+++..|+|.+-
T Consensus 26 ~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF 60 (162)
T PF10237_consen 26 DTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRF 60 (162)
T ss_pred CCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchH
Confidence 368999988765443 443 3467789999999764
No 410
>PRK07775 short chain dehydrogenase; Provisional
Probab=26.51 E-value=3.3e+02 Score=25.96 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=39.4
Q ss_pred CeEEEECCcccHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~~--~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|+ +|.|+..++..+. +++|++++.++..++-....+... ..++.++..|..
T Consensus 11 ~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 69 (274)
T PRK07775 11 RPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD---GGEAVAFPLDVT 69 (274)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 46787774 5778888887653 689999988877665554444433 235778888864
No 411
>PRK09186 flagellin modification protein A; Provisional
Probab=26.49 E-value=3.1e+02 Score=25.36 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|.+ |.|+..++..+ .++++++++.+++.++.+...+.... -...+.++..|..
T Consensus 5 k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 65 (256)
T PRK09186 5 KTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF-KSKKLSLVELDIT 65 (256)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc-CCCceeEEEecCC
Confidence 467777775 45887777655 47899999999888876666654331 1234667777764
No 412
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.07 E-value=1.4e+02 Score=28.31 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=32.7
Q ss_pred CeEEEECCccc-HHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGAN-CIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG-~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++| -|+..++.++ .+++|+.++.++...+.+++..+..+ . ..+++.|..
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~-~~~~~~Dv~ 68 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---C-NFVSELDVT 68 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---C-ceEEEccCC
Confidence 45777777663 4776666554 47899988887543333444333322 1 234566754
No 413
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.05 E-value=1.2e+02 Score=29.32 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=34.4
Q ss_pred CeEEEECCcc-cHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGs-G~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.++ +-|+..++.++ .+++|+.++.+....+..++-.+..+ . ..++..|..
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~-~~~~~~Dv~ 67 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---S-DFVLPCDVE 67 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---C-ceEEeCCCC
Confidence 4688888775 24777777655 57899999887654443333333222 1 235666754
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.94 E-value=1.7e+02 Score=28.71 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=28.4
Q ss_pred eEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
+|.=||+|+=.-+++......+.+|+.+|++++.++.++.+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4666777643322222222356799999999999999887754
No 415
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=25.55 E-value=3.6e+02 Score=24.93 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=37.5
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|+ +|.|+..++..+ .+.+++.++.++..++...+.+...+ .++.++..|..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 59 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG---GKAVAYKLDVS 59 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 3555664 577887777654 47899999998877665544444332 46788888864
No 416
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.44 E-value=1.4e+02 Score=28.76 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=34.8
Q ss_pred CeEEEECCc-ccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTG-ANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtG-sG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|.+ ++-|+..+++.+ .+++|+.++.+....+.+++..+..+ ....++.|..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~----~~~~~~~Dl~ 70 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG----AFVAGHCDVT 70 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC----CceEEecCCC
Confidence 467777876 467888888765 57899888766443333333333322 2445667754
No 417
>PRK06198 short chain dehydrogenase; Provisional
Probab=25.43 E-value=3.1e+02 Score=25.48 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=38.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCe-eEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWS-FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~-vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|.+ |.|+..++..+ .+++ |++++.+++.+......+.. ...++.++..|..
T Consensus 7 k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~ 66 (260)
T PRK06198 7 KVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA---LGAKAVFVQADLS 66 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 568888864 55888777654 4677 99999988766544444432 2346777888764
No 418
>PRK08264 short chain dehydrogenase; Validated
Probab=25.37 E-value=1.5e+02 Score=27.20 Aligned_cols=50 Identities=10% Similarity=-0.060 Sum_probs=34.8
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~-~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=+| |+|.|+..++..+ .++ +|++++.+++.++. . ..++.++..|..
T Consensus 7 ~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~---~~~~~~~~~D~~ 59 (238)
T PRK08264 7 KVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------L---GPRVVPLQLDVT 59 (238)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------c---CCceEEEEecCC
Confidence 5788888 4677888877754 367 89999988765432 2 135778888764
No 419
>PRK08278 short chain dehydrogenase; Provisional
Probab=25.27 E-value=1.3e+02 Score=28.75 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=35.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHH-------HHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVA-------LEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~A-------l~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..+++.+ .+++|++++.+... ++-+.+-+...+ .++.++..|..
T Consensus 7 k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~D~~ 72 (273)
T PRK08278 7 KTLFITGAS-RGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG---GQALPLVGDVR 72 (273)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC---CceEEEEecCC
Confidence 467877774 56787777754 47899999886542 332223333332 46778888864
No 420
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.15 E-value=2.1e+02 Score=26.53 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=39.3
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..++..+ .+++|++++.++..++.+.+-++.. ..++.++..|..
T Consensus 8 ~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 66 (262)
T PRK13394 8 KTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA---GGKAIGVAMDVT 66 (262)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc---CceEEEEECCCC
Confidence 45675554 466887777654 4789999999998776666655443 245778888864
No 421
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.02 E-value=4e+02 Score=24.44 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=40.2
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++..+ .++++++++.+++.++.....++.. ..++.++..|..
T Consensus 8 ~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 66 (250)
T PRK12939 8 KRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA---GGRAHAIAADLA 66 (250)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46776664 567888887765 4789999999988776655555432 246888888864
No 422
>PRK09134 short chain dehydrogenase; Provisional
Probab=24.97 E-value=1.9e+02 Score=27.05 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=35.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecC-cHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDM-TDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDi-s~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|.+ |.|+..++..+ .+++++.++. +...++.+...+...+ .++.++..|..
T Consensus 10 k~vlItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 69 (258)
T PRK09134 10 RAALVTGAA-RRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALG---RRAVALQADLA 69 (258)
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 467778854 66888777655 4678887665 4444444444443332 45778888764
No 423
>PRK12744 short chain dehydrogenase; Provisional
Probab=24.70 E-value=1.7e+02 Score=27.44 Aligned_cols=57 Identities=18% Similarity=0.050 Sum_probs=33.9
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCc----HHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMT----DVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis----~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|+ +|.|+..+++.+ .+++++.++.+ .+.++...+.++.. ..++.+++.|..
T Consensus 9 k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 71 (257)
T PRK12744 9 KVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA---GAKAVAFQADLT 71 (257)
T ss_pred cEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh---CCcEEEEecCcC
Confidence 57888885 556888888765 36786666542 23333333333322 236788888864
No 424
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=24.29 E-value=3e+02 Score=25.71 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=37.4
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.| |+|.|+..+++.+ .+++|+.+|.+.+.++...... ..++.++..|..
T Consensus 7 ~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~ 62 (257)
T PRK07067 7 KVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI------GPAAIAVSLDVT 62 (257)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh------CCceEEEEccCC
Confidence 4677777 5667888888765 4789999999988765433221 235777888764
No 425
>PRK06720 hypothetical protein; Provisional
Probab=24.11 E-value=4.4e+02 Score=23.84 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=37.1
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|-.|.++| |+..++..+ .+++|+.+|.++..++.+.+.+...+ ..+.++..|..
T Consensus 17 k~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 75 (169)
T PRK06720 17 KVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG---GEALFVSYDME 75 (169)
T ss_pred CEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 46777776654 666665543 46899999999887766555554332 34667777754
No 426
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=23.50 E-value=1.8e+02 Score=33.42 Aligned_cols=99 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred CcEEEEEECCCcccccccccCCCccc----------------------------cCCCCCcccccCCh----HHHHHHHH
Q 015035 240 EQFDFCICNPPFFESMEEAGLNPKTS----------------------------CGGTPEEMVCSGGE----RAFITRII 287 (414)
Q Consensus 240 ~~fD~imcNPPy~~s~ee~~~~P~~a----------------------------~~g~~~Em~~~GGe----~~Fv~rii 287 (414)
++||+||.-|||++.-.-+.+.-... ..-...+.+-.+|. ..|+.+++
T Consensus 488 ekfd~IVtDPPY~DdVpY~elsDffYvWlkr~l~~i~~~~~e~~~~w~~f~~~ev~~~~~~~~~~~~~~E~a~~~fe~l~ 567 (875)
T COG1743 488 EKFDVIVTDPPYYDDVPYAELSDFFYVWLKRILGRIGGKWLEIATQWQEFAKDEVSTNEGRFVGGGGRKEGAVEEFENLF 567 (875)
T ss_pred ccCceeecCCCcccCCCcccccceeeeehHhhhhhccccccchhhHhHHHhhcccccCcccccCCCcchhHHHHHHHHHH
Q ss_pred HHHHH----hhccCcEEEEEeCCcC--CHHHHHHH-HHHcCCceEEEEEecCCCeeEE
Q 015035 288 EDSVA----LKQTFRWYTSMVGRKS--NLKFLISK-LRKVGVTIVKTTEFVQGQTCRW 338 (414)
Q Consensus 288 ~eS~~----l~~~~~w~t~mvgk~~--~l~~l~~~-l~~~g~~~v~~~e~~qG~t~Rw 338 (414)
.++.+ +++..|..++++.-++ .-..+++. +++.|+....+..+..--..||
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~pv~TEs~~s~ 625 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWPVRTESLASV 625 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccccccchHHHH
No 427
>PRK09291 short chain dehydrogenase; Provisional
Probab=23.48 E-value=3.8e+02 Score=24.78 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=37.7
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|++ |.|+..++..+ .+++|++++.++..++.........+ ..+.++..|..
T Consensus 4 ~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 61 (257)
T PRK09291 4 TILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG---LALRVEKLDLT 61 (257)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcceEEEeeCC
Confidence 57777764 55777776654 47899999998876655544444332 35788888864
No 428
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.41 E-value=4.1e+02 Score=24.57 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=36.2
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCc-HHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMT-DVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis-~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.+|=.| |+|.|+..++..+ .++++++++.. +..++.....++.. ..++.++..|..
T Consensus 4 ~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 62 (256)
T PRK12745 4 VALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL---GVEVIFFPADVA 62 (256)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc---CCceEEEEecCC
Confidence 577677 5777888877654 37899999864 33444334444332 246888888865
No 429
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=23.03 E-value=2e+02 Score=26.49 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=28.6
Q ss_pred CCeEEEECCcc-cHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGs-G~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
..++|..|+|+ |...+.+++ ..+.++++++.+++..+.++.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~-~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAK-AAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCeEEEEcCCHHHHHHHHH
Confidence 46899999886 333333443 346899999999887777643
No 430
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.88 E-value=70 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHH
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A 155 (414)
+...+||||+-||-..-.+.++ -..+|+|+|+...-+.+-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh
Confidence 4568999999999988766653 345899999987666554
No 431
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=22.82 E-value=1e+02 Score=28.82 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=8.3
Q ss_pred EEEECCCccc
Q 015035 244 FCICNPPFFE 253 (414)
Q Consensus 244 ~imcNPPy~~ 253 (414)
-|.|||||-.
T Consensus 66 ~vf~NPPYs~ 75 (181)
T PF05869_consen 66 RVFCNPPYSR 75 (181)
T ss_pred eEEecCchhh
Confidence 5899999953
No 432
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=22.59 E-value=3e+02 Score=27.12 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=42.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 015035 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (414)
Q Consensus 115 ~~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~ 176 (414)
++.+||.+|-|-|.|...+-.+-| .+=+-+|..|+.++.-+.+.=.. .++|.++.+-.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~W 158 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRW 158 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc---ccceEEEecch
Confidence 457999999999999877765444 45567899999998888775332 24577776654
No 433
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=22.36 E-value=31 Score=29.38 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=9.0
Q ss_pred EEEECCcccHH
Q 015035 119 GFDIGTGANCI 129 (414)
Q Consensus 119 vLDIGtGsG~I 129 (414)
-+|||||.|.-
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 47999999954
No 434
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=21.73 E-value=3.1e+02 Score=26.41 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCcEEEEEECCCcccccccccCCCccccCCCCCcccc-cCChHHH-HHHHHHHHHHhhccCcEEEEEeCCcCCHHHHHH
Q 015035 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC-SGGERAF-ITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS 315 (414)
Q Consensus 238 ~~~~fD~imcNPPy~~s~ee~~~~P~~a~~g~~~Em~~-~GGe~~F-v~rii~eS~~l~~~~~w~t~mvgk~~~l~~l~~ 315 (414)
++.++|+++.-|||.-...-............-+. ++ .++-..| ....+.+....+..++-+....+ ......+..
T Consensus 32 ~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v~~~-~~~~~~~~~ 109 (302)
T COG0863 32 PENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDG-WDSRGIYLKFILLQWLAEQKRVLKPGGSLYVIDP-FSNLARIED 109 (302)
T ss_pred cccceeEEEcCCCccccccccccccccccchhhhh-hhhHHHHHHHHHHHHHHHhhheecCCCEEEEECC-chhhhHHHH
Q ss_pred HHHHcCCceEEEE
Q 015035 316 KLRKVGVTIVKTT 328 (414)
Q Consensus 316 ~l~~~g~~~v~~~ 328 (414)
.+++.|+.....+
T Consensus 110 ~~~~~gf~~~~~i 122 (302)
T COG0863 110 IAKKLGFEILGKI 122 (302)
T ss_pred HHHhCCCeEeeeE
No 435
>PLN00015 protochlorophyllide reductase
Probab=21.67 E-value=1.1e+02 Score=29.94 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHh--cC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 125 GANCIYPLLGASL--LG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 125 GsG~I~i~La~~~--~~-~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
|++-|+..+++.+ .+ ++|+.++.+++.++.+..-+.. ...++.++..|..
T Consensus 5 as~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~ 57 (308)
T PLN00015 5 ASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM---PKDSYTVMHLDLA 57 (308)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEEecCC
Confidence 3456777777654 46 8999999988776544433321 1245777777754
No 436
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.65 E-value=2.5e+02 Score=25.79 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=38.6
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=+|+. |.|+..+++.+ .+++|++++.++..++.....+.. ..++.++..|..
T Consensus 6 ~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~ 63 (251)
T PRK07231 6 KVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA----GGRAIAVAADVS 63 (251)
T ss_pred cEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence 467777655 55777776654 478999999999877666555543 235788888864
No 437
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.36 E-value=2.1e+02 Score=28.31 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=29.0
Q ss_pred eEEEECCcccH--HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 015035 118 KGFDIGTGANC--IYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (414)
Q Consensus 118 ~vLDIGtGsG~--I~i~La~~~~~~~vvgvDis~~Al~~A~~N~~ 160 (414)
+|-=||+|+=- |+..++ ..+.+|+..|+++++++.++..++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHH
Confidence 67777776422 333333 458999999999999998776654
No 438
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=21.33 E-value=3.5e+02 Score=26.87 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=35.5
Q ss_pred CCeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+||=.| |+|.|+..|++.+ .+++|++++.++...+........ ..++.++..|..
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~ 68 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE----GDRLRLFRADLQ 68 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc----CCeEEEEECCCC
Confidence 45788877 4789999888765 478999988776543322111111 134666666643
No 439
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=3.3e+02 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhc----CCeeEEecCcHHHHHHHHHH-HHHCCCCCCcEEEEEcc
Q 015035 116 KVKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKN-VKSNPHISELIEIRKVD 175 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~----~~~vvgvDis~~Al~~A~~N-~~~n~~l~~rI~~~~~d 175 (414)
....+|+|+|+.-=...|...+. -.+.+.+|||...|+...+- ....+++ -|.-+.+|
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~ 141 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGD 141 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhh
Confidence 46899999999976665554433 37899999999998654444 4444433 24444444
No 440
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.92 E-value=2.8e+02 Score=26.04 Aligned_cols=56 Identities=14% Similarity=0.012 Sum_probs=37.9
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|++ |.|+..++..+ .+++|++++.+++.++....-++ . ..++.++..|..
T Consensus 6 ~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~D~~ 63 (263)
T PRK09072 6 KRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y---PGRHRWVVADLT 63 (263)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c---CCceEEEEccCC
Confidence 457777765 45776666543 47899999999887765544442 2 246888888864
No 441
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.88 E-value=2.8e+02 Score=28.09 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=40.8
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..++=.|+=+| |+...+..+ .+++|+-.-.|.+..+.|++-+.... -..+|.+++.|..
T Consensus 36 ~~~vVTGansG-IG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~-~~~~i~~~~lDLs 96 (314)
T KOG1208|consen 36 KVALVTGATSG-IGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK-ANQKIRVIQLDLS 96 (314)
T ss_pred cEEEEECCCCc-hHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEECCCC
Confidence 46666777665 555555433 46999999999877766666665532 4567899999865
No 442
>PRK06128 oxidoreductase; Provisional
Probab=20.83 E-value=1.3e+02 Score=29.35 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=34.3
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHH--HHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVA--LEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~A--l~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
.++|=.|. +|.|+..++..+ .+++|+.+..+.+. .+...+.++.. ..++.++..|..
T Consensus 56 k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 116 (300)
T PRK06128 56 RKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE---GRKAVALPGDLK 116 (300)
T ss_pred CEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc---CCeEEEEecCCC
Confidence 57888885 566887777765 47888887765432 22222333332 235777778764
No 443
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=20.77 E-value=31 Score=34.73 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 015035 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (414)
Q Consensus 116 ~~~vLDIGtGsG~I~i~La~~~~~~~vvgvDis~~Al~~A~~ 157 (414)
...++|+|||.|-.. ...|..-++|.|++...+..|++
T Consensus 46 gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred cceeeecccCCcccC----cCCCcceeeecchhhhhcccccc
Confidence 457999999999542 12377789999999988877753
No 444
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=20.77 E-value=1.1e+02 Score=31.08 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=15.7
Q ss_pred CCCCeEEEECCcccHHHHHHHH
Q 015035 114 GDKVKGFDIGTGANCIYPLLGA 135 (414)
Q Consensus 114 ~~~~~vLDIGtGsG~I~i~La~ 135 (414)
....+|+|+||-+|.-++.+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3557999999999988876654
No 445
>PRK06114 short chain dehydrogenase; Provisional
Probab=20.24 E-value=5.1e+02 Score=24.17 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.0
Q ss_pred CeEEEECCcccHHHHHHHHHh--cCCeeEEecCcHH-HHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDV-ALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~-Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=.|. +|.|+..++.++ .+++++.++.++. .++...+.++.. ..++.++..|..
T Consensus 9 k~~lVtG~-s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 68 (254)
T PRK06114 9 QVAFVTGA-GSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA---GRRAIQIAADVT 68 (254)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 46787774 555888887765 4789999998643 344444444433 246777888864
No 446
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.24 E-value=1.8e+02 Score=27.78 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=23.3
Q ss_pred CeEEEECC-cccHHHHHHHHHh--cCCeeEEecCc
Q 015035 117 VKGFDIGT-GANCIYPLLGASL--LGWSFVGSDMT 148 (414)
Q Consensus 117 ~~vLDIGt-GsG~I~i~La~~~--~~~~vvgvDis 148 (414)
..+|=.|. |++-|+..++.++ .+++|+.++..
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc
Confidence 46777776 4677888888765 47899887654
No 447
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=20.10 E-value=2.4e+02 Score=27.79 Aligned_cols=60 Identities=13% Similarity=-0.002 Sum_probs=40.5
Q ss_pred CeEEEECCcccHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 117 VKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 117 ~~vLDIGtGsG~I~i~La~~--~~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
..+|=-|..+| |+-.++.+ ..+++|+-++.+++.++.+..-....+.-..++..+..|..
T Consensus 9 kvalVTG~s~G-IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 70 (270)
T KOG0725|consen 9 KVALVTGGSSG-IGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVS 70 (270)
T ss_pred cEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCC
Confidence 45666666666 44444433 36889999999999998887776665422356777777754
No 448
>PRK08267 short chain dehydrogenase; Provisional
Probab=20.07 E-value=2.6e+02 Score=26.20 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=37.6
Q ss_pred eEEEECCcccHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 015035 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (414)
Q Consensus 118 ~vLDIGtGsG~I~i~La~~~--~~~~vvgvDis~~Al~~A~~N~~~n~~l~~rI~~~~~d~~ 177 (414)
++|=.|.+ |.|+..++..+ .+++|++++.+++.++....... ..++.+++.|..
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~ 58 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-----AGNAWTGALDVT 58 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCC
Confidence 46777755 55777776654 47899999999887766544433 235888888864
Done!