BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015036
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S6R|A Chain A, 908r Class C Beta-Lactamase Bound To Iodo-Acetamido-Phenyl
Boronic Acid
Length = 359
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 136 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 194
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 195 ---AHYA-WGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVM 233
>pdb|1Y54|A Chain A, Crystal Structure Of The Native Class C Beta-Lactamase
From Enterobacter Cloacae 908r Complexed With Brl42715
Length = 361
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 138 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 196
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 197 ---AHYA-WGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVM 235
>pdb|2Q9M|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
pdb|2Q9N|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
Length = 359
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 137 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 195
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 196 ---AHYA-WGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVM 234
>pdb|1BLS|A Chain A, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1BLS|B Chain B, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1XX2|A Chain A, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
pdb|1XX2|B Chain B, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
Length = 361
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 138 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 196
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 197 ---AHYA-WGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVM 235
>pdb|2ZC7|A Chain A, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|B Chain B, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|C Chain C, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|D Chain D, Crystal Structure Of Class C Beta-Lactamase Act-1
Length = 359
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S ++ I + + LK+D T++N+ + E
Sbjct: 137 WQPQWKPGTTRLYANASIGLFGALAVKPSGMSYEQAITTRVFKPLKLDHTWINVPKAEE- 195
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D W +
Sbjct: 196 ---AHYA-WGYRDGKAVHVSPGMLDAEAYGVKTNVQDMASWVM 234
>pdb|1RGZ|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Transition-State Analog Of Cefotaxime
pdb|1Q2Q|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Penem Way185229
Length = 363
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 137 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 195
Query: 356 RKDAHTSVYGERKGK----------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 196 ---AHYA-WGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVM 237
>pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae
Gc1
pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-Lactamase With A
Cephalosporin Sulfone Inhibitor
pdb|1ONH|A Chain A, Gc1 Beta-Lactamase With A Penem Inhibitor
Length = 364
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ N S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 138 WQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 196
Query: 356 RKDAHTSVYGERKGK----------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 197 ---AHYA-WGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVM 238
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 62 KDRFEESCNVF---EGKWIWDNVTYPLYSEESCPYLVKQTTCQRNGRPDSFYQNWRWQPD 118
K+R EE C+ + +G W + N+ + E C LV T + +P PD
Sbjct: 132 KERKEEKCHQYWPDQGCWTYGNIRVCV---EDCVVLVDYTIRKFCIQPQL--------PD 180
Query: 119 GCKLPRF 125
GCK PR
Sbjct: 181 GCKAPRL 187
>pdb|3S4X|A Chain A, Crystal Structure Of The Asn152gly Mutant Of P99
Beta-lactamase
Length = 367
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 297 WSWEWKPGSNENCFNESYPIQGSYWGTGSSLTI-MKIVQDILQELKIDVTFLNITQLSEY 355
W +WKPG+ S + G+ S + + +L+ LK+D T++N+ + E
Sbjct: 138 WQPQWKPGTTRLYAGASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEE- 196
Query: 356 RKDAHTSVYGERKGK-------LLTKKQRSDPKNFADCIHWCL 391
AH + +G R GK +L + N D +W +
Sbjct: 197 ---AHYA-WGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVM 235
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ Domain At 1.9a Resolution
Length = 435
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 167 KSFHRIPPMKIFKAEEYNASIEYYWAPFIVESISDHATNHTVLKRLVDLDSIAKHGKSWQ 226
K R+PP IF+A +Y I P ++ + ATN +RL+ L + + W+
Sbjct: 118 KDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWK 177
>pdb|1MOJ|A Chain A, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|B Chain B, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|C Chain C, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|D Chain D, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1TJO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|A Chain A, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|B Chain B, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|C Chain C, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|D Chain D, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
Length = 182
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 195 IVESISDHATNHTVLKRLVDLDSIAKHGKSWQGVDVLV 232
+ E++ DHAT H + + L++L+ A H + + D LV
Sbjct: 139 LAENLGDHATAHMLREGLIELEDDAHHIEHYLEDDTLV 176
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 167 KSFHRIPPMKIFKAEEYNASIEYYWAPFIVESISDHATNHTVLKRLVDLDSIAKHGKSWQ 226
K R+PP IF+A +Y I P ++ + ATN +RL+ L + + W+
Sbjct: 339 KDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWK 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,473,994
Number of Sequences: 62578
Number of extensions: 585572
Number of successful extensions: 1535
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 38
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)