BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015037
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 16/254 (6%)
Query: 22 AASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGP 81
A ++ LPG F +GY+ SG L Y+FV+S+K+P P++LWL GGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 82 GCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL 141
GCS+ GL E GP +V+ +G TL NPYSW A++L+++SP G G+SY+
Sbjct: 59 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 142 ASQAGDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIK 201
+ D + Q + L+ + PE +N +++ G+SY+G+ +P L + +
Sbjct: 114 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 166
Query: 202 PLINLQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGCGGE-YVNV-DPKNE 259
P +NLQG +GN + +NS + FA+ GL+ N L+ SL+ C + N D K+
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 260 VCLNDIQAFSKTYG 273
C+ ++Q ++ G
Sbjct: 227 ECVTNLQEVARIVG 240
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 249 GEYVNVDPKNEVCLNDIQAFSKTYGYLLSYYWNNDYNVRKALRIRLGSKGEWQRCNF--G 306
G+ V +DP C N A S Y NN Y VRKAL I +W CNF
Sbjct: 294 GDKVRMDPP---CTNTTAA---------STYLNNPY-VRKALNIP-EQLPQWDMCNFLVN 339
Query: 307 LPYAREIHSSFSYHVSL-STKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWI 365
L Y R S S ++ L S++ Y+ L+Y+GD DM F+G E ++ SLN + RPW+
Sbjct: 340 LQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWL 399
Query: 366 LH-----SQVAGYTRTYSNRMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 413
+ Q+AG+ + +S+ + + T+KG GH P +P + MF R++N P
Sbjct: 400 VKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 16/254 (6%)
Query: 22 AASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGP 81
A ++ LPG F +GY+ SG L Y+FV+S+K+P P++LWL GGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 82 GCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL 141
GCS+ GL E GP +V+ +G TL NPYSW A++L+++SP G G+SY+
Sbjct: 61 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 142 ASQAGDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIK 201
+ D + Q + L+ + PE +N +++ G+SY+G+ +P L + +
Sbjct: 116 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 168
Query: 202 PLINLQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGCGGE-YVNV-DPKNE 259
P +NLQG +GN + +NS + FA+ GL+ N L+ SL+ C + N D K+
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 260 VCLNDIQAFSKTYG 273
C+ ++Q ++ G
Sbjct: 229 ECVTNLQEVARIVG 242
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 185/422 (43%), Gaps = 78/422 (18%)
Query: 44 TGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEY 103
TGY+ V E D F++ +S +P +DP++LWL GGPGCS+ +GL +E+GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIG---- 72
Query: 104 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFLRKW 161
P L NPYSW A+++F+D PV G+SY+ + S + V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 162 LLDHPELLS--NPVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEPT 219
PE ++ +I G+SY+G +P +I + + + NL ++GN T+P
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 220 VEENSKIPFAHGMG-----LISNE---LYESLKMGCGGEYVNVD--------PKNEVCLN 263
+ N P A G G L S E + +SL+ G D P C N
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 264 ------------------DIQAFSKTYGYL--LSYYWNNDYNVRKALRIRLGSKGEWQRC 303
D + + Y L + Y N DY V++A+ + ++ C
Sbjct: 243 AQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY-VKEAVGAEV---DHYESC 298
Query: 304 NFGL--------PYAREIHSSFSYHVSLSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNY 355
NF + + + H++ + L + L+Y+GD D + +LG +AW L +
Sbjct: 299 NFDINRNFLFAGDWMKPYHTAVT---DLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPW 355
Query: 356 SIVDDW-----RPWI--LHSQVAGYTRTYSNRMTYATVKGGGHTAPEYRPAECYAMFQRW 408
+++ R W + +VAG ++Y TY V GGH P P +M W
Sbjct: 356 KYDEEFASQKVRNWTASITDEVAGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 409 IN 410
I+
Sbjct: 415 IH 416
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 183/422 (43%), Gaps = 78/422 (18%)
Query: 44 TGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEY 103
TGY+ V E D F++ +S +P +DP++LWL GGPGCS+ +GL + +GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIG---- 72
Query: 104 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFLRKW 161
P L NPYSW A+++F+D PV G+SY+ + S + V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 162 LLDHPELLS--NPVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEPT 219
PE ++ +I G SY+G +P +I + + + NL ++GN T+P
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 220 VEENSKIPFAHGMG-----LISNE---LYESLKMGCGGEYVNVD--------PKNEVCLN 263
+ N P A G G L S E + +SL+ G D P C N
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 264 ------------------DIQAFSKTYGYL--LSYYWNNDYNVRKALRIRLGSKGEWQRC 303
D + + Y L + Y N DY V++A+ + ++ C
Sbjct: 243 AQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY-VKEAVGAEV---DHYESC 298
Query: 304 NFGL--------PYAREIHSSFSYHVSLSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNY 355
NF + + + H++ + L + L+Y+GD D + +LG +AW L +
Sbjct: 299 NFDINRNFLFAGDWMKPYHTAVT---DLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPW 355
Query: 356 SIVDDW-----RPWI--LHSQVAGYTRTYSNRMTYATVKGGGHTAPEYRPAECYAMFQRW 408
+++ R W + +VAG ++Y TY V GGH P P +M W
Sbjct: 356 KYDEEFASQKVRNWTASITDEVAGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 409 IN 410
I+
Sbjct: 415 IH 416
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 65 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 175
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 66 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 176
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 70 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 28 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS 87
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 88 -GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQA 145
G + E+G V+ G+ L LN Y W K A++LF+DSP G G+SY T +
Sbjct: 70 YGASEELGAFR---VKPAGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 146 GDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLIN 205
GD + FL KW P YI G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 206 LQGYILGNAATEPTVEENSKIPFAHGMGLISNELYESLKMGC 247
L+G+++GN + + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 31 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDP-LLLWLTGGPGCSAFS-G 88
LPG + F + GYV + ++ L+Y+F +++ L+LWL GGPGCS+ G
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLG 72
Query: 89 LAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDF 148
E+G V NG +L LN Y+W K A+ILF +SP G G+SY+ T GD
Sbjct: 73 AMQELGAFR---VHTNGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 149 KQVQQVDQFLRKWLLDHPELLSNPVYIGGDSYSGLVVPALVQQI-SNENEEDIKPLINLQ 207
K Q FL KW P YI G+ SG +P L Q + N N P IN Q
Sbjct: 128 KMAQDTYTFLVKWFERFPHYNYREFYIAGE--SGHFIPQLSQVVYRNRNN---SPFINFQ 182
Query: 208 GYILGNAATEPTVEENSKIPFAHGMGLISNELYES-LKMGCGGEYVNVDPK 257
G ++ + T + GLIS+E +S LK+ G +++ P+
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPE 233
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 51 ESGDAQLFYY-FVKSEKNPRED-PLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLP 108
+S D + F++ F ++ N D PL++WL GGPGCS+ G E GP N S
Sbjct: 45 DSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVN------SDG 98
Query: 109 TLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVD-------QFLRKW 161
L+LN SW + +LF+D P GTG+S + + K + ++ FL +
Sbjct: 99 KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENY 158
Query: 162 LLDHPELLSNPVYIGGDSYSGLVVPALVQQISNENE--EDIKPLINLQGYILGNAATEPT 219
PE L+ + + G+SY+G +P I N N+ + +L+ ++GN +P
Sbjct: 159 FKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPN 218
Query: 220 VEENSKIPFAHGMGLI 235
+ S +PFA LI
Sbjct: 219 TQSLSYLPFAMEKKLI 234
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 11/145 (7%)
Query: 277 SYYWNNDYNVRKALRIRLGSKGEWQRCNF--GLPYAREIHSSFSYHVSL-STKGYRSLIY 333
S Y NN Y VRKAL I +W CNF L Y R S S ++ L S++ Y+ L+Y
Sbjct: 12 STYLNNPY-VRKALNIP-EQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLY 69
Query: 334 SGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNRMTYATVKG 388
+GD DM F+G E ++ SLN + RPW++ Q+AG+ + +S+ + + T+KG
Sbjct: 70 NGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKG 128
Query: 389 GGHTAPEYRPAECYAMFQRWINHDP 413
GH P +P + MF R++N P
Sbjct: 129 AGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 323 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWIL---HSQVAGYTRTYSN 379
L G R +YSGD D +VP T + +L + W PW + +V G++ Y
Sbjct: 62 LIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG 121
Query: 380 RMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 414
+TY TV+G GH P +RPA+ + +F++++ +P+
Sbjct: 122 -LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPM 155
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 323 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 382
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 62 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 120
Query: 383 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 414
+V+G GH P +RP + +FQ ++ P+
Sbjct: 121 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 323 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 382
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 383 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 414
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 323 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 382
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 383 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 414
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 323 LSTKGYRSLIYSGDHDMMVPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNRMT 382
L G R ++SGD D +VP T I +L W PW +V G+++ Y +T
Sbjct: 60 LIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LT 118
Query: 383 YATVKGGGHTAPEYRPAECYAMFQRWINHDPL 414
+V+G GH P +RP + +FQ ++ P+
Sbjct: 119 LVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 303 CNFGLPYAR-EIHSSFSYHVSLSTKGYRSLIYSGDHDMMV 341
C++GLP R E HS+F V+LS G ++ S DH + +
Sbjct: 54 CSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRL 93
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSD|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|A Chain A, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
pdb|1SSG|B Chain B, Understanding Protein Lids: Structural Analysis Of Active
Hinge Mutants In Triosephosphate Isomerase
Length = 247
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 113 NPYSWTKEASILFVDSPV---GTGYSYAKTPLASQAGDFKQVQQVDQFLRKWLLDH-PEL 168
N W+K ++ PV GTGYS TP +Q Q+V + LR WL H +
Sbjct: 152 NVKDWSK---VVLAYEPVWAIGTGYSL--TP--------QQAQEVHEKLRGWLKSHVSDA 198
Query: 169 LSNPVYIGGDSYSGLVVPALVQQISNENEEDIKPLINLQGYILGNAATEP 218
++ I Y G V ++++++++ D G+++G A+ +P
Sbjct: 199 VAQSTRI---IYGGSVTGGNCKELASQHDVD--------GFLVGGASLKP 237
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 215 ATEPTVEENSKIPFAHGMG-LISNELYESLKMGCGGEYVNVDPKNEVCLNDIQA 267
AT + EN + PF +G +I +E E K G+ V+ DPK +N+I
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISG 57
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 215 ATEPTVEENSKIPFAHGMG-LISNELYESLKMGCGGEYVNVDPKNEVCLNDI 265
AT + EN + PF +G +I +E E K G+ V+ DPK +N+I
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEI 55
>pdb|3SY9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
Length = 430
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 121 ASILFVDSPVGTGYSYAKTPLA-SQAGDFKQVQQVDQFLRKWLLDHPELLSNPVYIGGDS 179
SIL + SP GY K P S G +++ D L+ L D + LSNPV GG+S
Sbjct: 79 TSILPITSPSKEGYESGKAPDEFSSGGAALKIRAFDTELK--LGD--QFLSNPVVAGGES 134
Query: 180 YSGLVVPALVQQIS--NENEEDI 200
++P + +S N + ED+
Sbjct: 135 ---RMLPQTFRGVSLTNNSFEDL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,775,486
Number of Sequences: 62578
Number of extensions: 626738
Number of successful extensions: 1388
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 29
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)