BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015038
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/359 (51%), Positives = 246/359 (68%), Gaps = 11/359 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
+S F ++ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG
Sbjct: 108 RSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGC 167
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ D
Sbjct: 168 GSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVD 226
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
I+ISEPMG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA
Sbjct: 227 IIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 285
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q +++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+
Sbjct: 286 FWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIE 345
Query: 253 IPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAG 312
IP KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG
Sbjct: 346 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 405
Query: 313 QEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
++G +IA+ QSY I + V DQ G SS LDLK P++R + P
Sbjct: 406 DTLSGTCLLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYTGTTP 455
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 245/358 (68%), Gaps = 11/358 (3%)
Query: 14 SKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAG 73
S F ++ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 74 SGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133
SGILS FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ DI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVDI 119
Query: 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALF 193
+ISEPMG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 194 WQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDI 253
W Q +++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+I
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEI 238
Query: 254 PLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQ 313
P KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG
Sbjct: 239 PFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGD 298
Query: 314 EITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
++G +IA+ QSY I + V DQ G SS LDLK P++R + P
Sbjct: 299 TLSGTCLLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYTGTTP 347
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/350 (52%), Positives = 242/350 (69%), Gaps = 11/350 (3%)
Query: 18 DKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGIL 77
++ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG GSGIL
Sbjct: 1 ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 60
Query: 78 SLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137
S FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ DI+ISE
Sbjct: 61 SFFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVDIIISE 119
Query: 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQ 197
PMG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA FW Q
Sbjct: 120 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQP 178
Query: 198 NYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKF 257
+++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+IP KF
Sbjct: 179 SFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKF 238
Query: 258 ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITG 317
VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG ++G
Sbjct: 239 HMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSG 298
Query: 318 QLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS 367
+IA+ QSY I + V DQ G SS LDLK P++R +
Sbjct: 299 TCLLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYT 339
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 241/349 (69%), Gaps = 11/349 (3%)
Query: 19 KVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILS 78
+ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG GSGILS
Sbjct: 1 RTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILS 60
Query: 79 LFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP 138
FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ DI+ISEP
Sbjct: 61 FFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVDIIISEP 119
Query: 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQN 198
MG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA FW Q +
Sbjct: 120 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 178
Query: 199 YYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFI 258
++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+IP KF
Sbjct: 179 FHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFH 238
Query: 259 SSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQ 318
VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG ++G
Sbjct: 239 MLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGT 298
Query: 319 LRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS 367
+IA+ QSY I + V DQ G SS LDLK P++R +
Sbjct: 299 CLLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYT 338
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 239/348 (68%), Gaps = 11/348 (3%)
Query: 24 SAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQ 83
+A YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG GSGILS FAAQ
Sbjct: 2 AAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ 61
Query: 84 AGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLL 143
AGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ DI+ISEPMG +L
Sbjct: 62 AGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML 120
Query: 144 VNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVD 203
NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA FW Q +++GVD
Sbjct: 121 FNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVD 179
Query: 204 LTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGT 263
L+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+IP KF
Sbjct: 180 LSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSG 239
Query: 264 RVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIA 323
VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG ++G +IA
Sbjct: 240 LVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIA 299
Query: 324 HSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
+ QSY I + V DQ G SS LDLK P++R + P
Sbjct: 300 NKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYTGTTP 338
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 185/367 (50%), Gaps = 28/367 (7%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
H+ G S K +D +S YF Y + +L+D VRT TY ++ NR
Sbjct: 8 HMSCGQAESSEKPNAEDM---TSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHL 64
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F +VV+DVG+G+GIL +FAA+AGA+ V +E S +++YA K++ N L +T+IKGK
Sbjct: 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN-KLDHVVTIIKGK 123
Query: 122 VEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180
VEEVELP EK DI+ISE MG L E ML T + ARD++L P G +FP +++ D
Sbjct: 124 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED 183
Query: 181 EYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPA-VSHVID 239
+ + + W +N YG D++ + A +P+VD DP+ LV A + +D
Sbjct: 184 R----QYKDYKIHW-WENVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEVD 234
Query: 240 FKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQL 299
K E+L P VH L +F++ F + +T+P +P THW Q
Sbjct: 235 IYTVKVEDL-TFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQT 293
Query: 300 RCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDL 359
+ L V G+EI G + M ++ + + T+ + D G L SC D
Sbjct: 294 VFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDL-------DFKGQLCELSCSTD- 345
Query: 360 KEPYYRM 366
YRM
Sbjct: 346 ----YRM 348
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 185/368 (50%), Gaps = 28/368 (7%)
Query: 1 MHLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRA 60
M + G S K +D +S YF Y + ML+D VRT TY ++ NR
Sbjct: 1 MEVSCGQAESSEKPNAEDM---TSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 57
Query: 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG 120
F +VV+DVG+G+GIL +FAA+AGA+ V +E S +++YA K++ N L +T+IKG
Sbjct: 58 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN-KLDHVVTIIKG 116
Query: 121 KVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFS 179
KVEEVELP EK DI+ISE MG L E ML T + ARD++L P G +FP +++
Sbjct: 117 KVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 176
Query: 180 DEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPA-VSHVI 238
D + + + W +N YG D++ + A +P+VD DP+ LV A + +
Sbjct: 177 DR----QYKDYKIHW-WENVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEV 227
Query: 239 DFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQ 298
D K E+L P VH L +F++ F + +T+P +P THW Q
Sbjct: 228 DIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQ 286
Query: 299 LRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLD 358
+ L V G+EI G + M ++ + + T+ + D G L SC D
Sbjct: 287 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDL-------DFKGQLCELSCSTD 339
Query: 359 LKEPYYRM 366
YRM
Sbjct: 340 -----YRM 342
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 178/346 (51%), Gaps = 25/346 (7%)
Query: 23 SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAA 82
+S YF Y + ML+D VRT TY ++ NR F +VV+DVG+G+GIL +FAA
Sbjct: 17 TSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAA 76
Query: 83 QAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141
+AGA+ V +E S +++YA K++ N L +T+IKGKVEEVELP EK DI+ISE MG
Sbjct: 77 KAGARKVIGIECSSISDYAVKIVKAN-KLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 135
Query: 142 LLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYG 201
L E ML T + ARD++L P G +FP +++ D + + + W +N YG
Sbjct: 136 CLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDR----QYKDYKIHW-WENVYG 190
Query: 202 VDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPA-VSHVIDFKKTKEENLYEIDIPLKFISS 260
D++ + A +P+VD DP+ LV A + +D K E+L P
Sbjct: 191 FDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVK 245
Query: 261 VGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLR 320
VH L +F++ F + +T+P +P THW Q + L V G+EI G +
Sbjct: 246 RNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIG 305
Query: 321 MIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRM 366
M ++ + + T+ + D G L SC D YRM
Sbjct: 306 MRPNAKNNRDLDFTIDL-------DFKGQLCELSCSTD-----YRM 339
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 31/319 (9%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
YF Y L HQ++ML D VR Y+ AV +N+ F G+ V+DVG GSGIL++++AQAGA+
Sbjct: 28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR 87
Query: 88 HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNER 147
VYAVEA++MA++AR L+ N +L + VI+G VE++ LPEK D++ISE MG L+ E
Sbjct: 88 KVYAVEATKMADHARALVKAN-NLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRES 146
Query: 148 MLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALF--------WQQ--- 196
M ++ + ARDR+L P G M+PS R+ +AP IA++ W
Sbjct: 147 MFDSVISARDRWLKPTGVMYPSHARMWLAPIKS-----NIADRKRNDFDGAMADWHNFSD 201
Query: 197 --QNYYGVD---LTPLYGSAFHGYFSQPVV-DAFDPRLLVA-PAVSHVIDFKKTKEENLY 249
++YYGVD LT + Y+ Q + + +P+ ++ P + +D +
Sbjct: 202 EIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIE 261
Query: 250 EIDIPL-KFISSVGTRVHGLACWFDVLFDG-----STVQRWLTTAPGAP-TTHWYQLRCV 302
E+ + I+ TR+ G WFDV F G + + LTTAP THW Q +
Sbjct: 262 EVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFI 321
Query: 303 LSQPLYVMAGQEITGQLRM 321
+S P+ V G + L M
Sbjct: 322 MSNPINVEEGDNLNLGLLM 340
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 185/368 (50%), Gaps = 28/368 (7%)
Query: 1 MHLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRA 60
M + G S K +D +S YF Y + ML+D VRT TY ++ NR
Sbjct: 11 MEVSCGQAESSEKPNAEDM---TSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 67
Query: 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG 120
F +VV+DVG+G+GIL +FAA+AGA+ V +E S +++YA K++ N L +T+IKG
Sbjct: 68 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN-KLDHVVTIIKG 126
Query: 121 KVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFS 179
KVEEVELP EK DI+ISE MG L + ML T + ARD++L P G +FP +++
Sbjct: 127 KVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 186
Query: 180 DEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPA-VSHVI 238
D + + + W +N YG D++ + A +P+VD DP+ LV A + +
Sbjct: 187 DR----QYKDYKIHW-WENVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEV 237
Query: 239 DFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQ 298
D K E+L P VH L +F++ F + +T+P +P THW Q
Sbjct: 238 DIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQ 296
Query: 299 LRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLD 358
+ L V G+EI G + M ++ + + T+ + D G L SC D
Sbjct: 297 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDL-------DFKGQLCELSCSTD 349
Query: 359 LKEPYYRM 366
YRM
Sbjct: 350 -----YRM 352
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 166/322 (51%), Gaps = 15/322 (4%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
YF Y + MLQD VRT +Y A+I+N+ F ++V+DVG G+GILS+FAA+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 88 HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNE 146
HV V+ S + E A++L+ N ++IT+++GK+E+V LP K DI+ISE MG L+ E
Sbjct: 63 HVIGVDMSSIIEMAKELVELN-GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 147 RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTP 206
M++T + ARD +LV G +FP IH+A D E N +W Q+ YG D +P
Sbjct: 122 SMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLN---YW--QDVYGFDYSP 176
Query: 207 LYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK-KTKEENLYEIDIPLKFISSVGTRV 265
H +P+VD + R V +I+F T + + K + +
Sbjct: 177 FVPLVLH----EPIVDTVE-RNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMI 231
Query: 266 HGLACWFDVLFDGSTVQR--WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIA 323
+G+ WFD++F +R +T P AP THW Q L G I G+L
Sbjct: 232 NGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSP 291
Query: 324 HSAQSYTIYLTLSVKMWGPGAD 345
+ + + + +S K G D
Sbjct: 292 NEKNNRDLNIKISYKFESNGID 313
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 172/322 (53%), Gaps = 13/322 (4%)
Query: 26 KMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG 85
++Y+ Y + + M+ D VRT Y ++ N A G+ V+DVGAG+GILS+F AQAG
Sbjct: 46 QLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAG 105
Query: 86 AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVN 145
A+ VYAVEAS + + AR+++ N L +R+ V+ G VE VELPE+ D ++SE MG L++
Sbjct: 106 ARRVYAVEASAIWQQAREVVRFN-GLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLH 164
Query: 146 ERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQ-QNYYGVDL 204
E ML + + AR ++L G + P+ + + P SD+ L + FW Q + +YGVD+
Sbjct: 165 ESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWRLG----FWSQVKQHYGVDM 220
Query: 205 TPLYGSAFHGYF--SQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSV 261
+ L G A S+ VV +L P ++ + E E + +F S
Sbjct: 221 SCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSC 280
Query: 262 --GTRVHGLACWFDVLFDGSTVQR--WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITG 317
+HG A WF V F G ++ L+T+P P THW Q L++P+ V +++G
Sbjct: 281 YGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSG 340
Query: 318 QLRMIAHSAQSYTIYLTLSVKM 339
++ ++ + + L K+
Sbjct: 341 EITLLPSRDNPRRLRVLLRYKV 362
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 175/316 (55%), Gaps = 18/316 (5%)
Query: 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA 86
+YF YG + ML+D +RT +Y + +N F +VV+DVG G+GILS+FAA+AGA
Sbjct: 28 VYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA 87
Query: 87 KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVN 145
K V V+ SE+ A +I N L + IT+IKGK+EEV LP EK D++ISE MG L+
Sbjct: 88 KKVLGVDQSEILYQAMDIIRLN-KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF 146
Query: 146 ERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLT 205
E ML++ + A++++L G ++P + I + SD + A++ FW + YG ++
Sbjct: 147 ESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD---VNKHADRIAFWD--DVYGFKMS 201
Query: 206 PLYGSAFHGYFSQPVVDAFDPRLLVA-PAVSHVIDFKKTKEENL-YEIDIPLKFISSVGT 263
+ + + VV+ DP+ L++ P ID T +L + D LK + +
Sbjct: 202 CMKKAVI----PEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRT--S 255
Query: 264 RVHGLACWFDVLFDGSTVQRWL-TTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI 322
+A +FD+ F+ + R + +T P + THW Q +L +P V AG+ + G++ +
Sbjct: 256 MCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVH 315
Query: 323 AHSA--QSYTIYLTLS 336
+ +S T+ LTL+
Sbjct: 316 KNKKDPRSLTVTLTLN 331
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 16/315 (5%)
Query: 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA 86
+YF YG + ML+D VRT +Y + +N F +VV+DVG G+GILS+FAA+AGA
Sbjct: 9 VYFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA 68
Query: 87 KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVN 145
K V AV+ SE+ A +I N L + I +IKGK+EEV LP EK D++ISE MG L+
Sbjct: 69 KKVIAVDQSEILYQAMDIIRLNK-LEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLF 127
Query: 146 ERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLT 205
E ML++ + A+ ++L G ++P + I + SD + A++ FW + YG +++
Sbjct: 128 ESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSD---VSKHADRIAFW--DDVYGFNMS 182
Query: 206 PLYGSAFHGYFSQPVVDAFDPRLLVA-PAVSHVIDFKKTKEENL-YEIDIPLKFISSVGT 263
+ + + VV+ D + L++ P ID T +L + D L+ ++
Sbjct: 183 CMKKAV----IPEAVVEVVDHKTLISDPCDIKHIDCHTTSISDLEFSSDFTLR--TTKTA 236
Query: 264 RVHGLACWFDVLFDGSTVQRWL-TTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI 322
+A +FD+ F+ + R + +T P + THW Q +L +P V AG+ + G++ +
Sbjct: 237 MCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTIFLLEKPFPVKAGEALKGKITVH 296
Query: 323 AHSAQSYTIYLTLSV 337
+ ++ +TL++
Sbjct: 297 KNKKDPRSLIVTLTL 311
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 123/283 (43%), Gaps = 27/283 (9%)
Query: 55 VIENRADFIGRVVVDVGAGSGIL---SLFAAQAGAKHV--YAVEASEMAEYARKLIAGNP 109
V E D +V++ +GAG G L SL AA+ + + YAVE + A +
Sbjct: 349 VPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFE- 407
Query: 110 SLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169
G ++TV+ + E PEKADI++SE +G+ NE E A+ FL G P
Sbjct: 408 EWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQ-HFLKDDGVSIPG 466
Query: 170 VGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLL 229
+AP S L+ E+ +A + ++ P Y H + + A P
Sbjct: 467 EYTSFLAPISSSKLYNEV--RACREKDRDPEAQFEMP-YVVRLHNFHQ---LSAPQPCFT 520
Query: 230 VA-PAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFD-VLFDGSTVQ-RWLT 286
+ P +ID N Y L+F V T +HG A +F+ VL+ T+ R T
Sbjct: 521 FSHPNRDPMID------NNRY---CTLEFPVEVNTVLHGFAGYFETVLYQDITLSIRPET 571
Query: 287 TAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSY 329
+PG W+ + + QP+ V GQ I + ++S + +
Sbjct: 572 HSPG--MFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVW 612
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 70 VGAGSGIL---SLFAAQAGAKH--VYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEE 124
+GAG G L SL AA+ + VYAVE + A + G ++TV+ G E
Sbjct: 384 LGAGRGPLVNASLRAAKQAERKIKVYAVEKNPNAVITLEGWRYE-EWGSQVTVVSGDXRE 442
Query: 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184
+ PEKADI++SE +G+ NE E A+ FL G P ++AP S L+
Sbjct: 443 WKAPEKADIIVSELLGSFGDNELSPECLDGAQ-HFLKDDGVSIPGEYTSYLAPISSSKLY 501
Query: 185 VEI 187
E+
Sbjct: 502 NEV 504
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIK 119
D G+VV D+GAG+G+LS A GAK V VE + E LI + V
Sbjct: 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVDVLIENLGEFKGKFKVFI 103
Query: 120 GKVEEVELPEKADILISEP 138
G V E + DI+I P
Sbjct: 104 GDVS--EFNSRVDIVIXNP 120
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 11 SLK-SKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVD 69
SLK +K+DDK +F Y Q+ + L + + + + DF + V+D
Sbjct: 2 SLKENKYDDK-------HFFEQYSQMPRSKEGL----KAAGEWHELKKMLPDFNQKTVLD 50
Query: 70 VGAGSGILSLFAAQAGAKHVYAVEASE--MAEYARKLIA 106
+G G G ++AA+ GAK V ++ SE + E RK +
Sbjct: 51 LGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS 89
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 34 QLLHQQNMLQDYVR-------TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA 86
Q L QQ ++Y+ T Y+ I N + GR V+D G G+GIL+ + GA
Sbjct: 15 QKLQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGA 74
Query: 87 KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE 123
+ V A + + E A++ G ++ I GK +
Sbjct: 75 ESVTAFDIDPDAIETAKRNCGGVNFXVADVSEISGKYD 112
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYA-VEASE-MAEYARKLIAGNPSLGERITVIKGKVEE 124
++D+GAG+G+LS F + + + V+ SE M E A+ GN ++ I+ +
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSK 103
Query: 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184
+ EK D+++S L +E E Y R ++ +F + +H E F
Sbjct: 104 YDFEEKYDMVVSALSIHHLEDEDKKELY--KRSYSILKESGIFINADLVH-----GETAF 156
Query: 185 VEIANKALFWQQ 196
+E NK + W+Q
Sbjct: 157 IENLNKTI-WRQ 167
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSL 111
A I NR +D+G+G G LS+ A+ + A++ S+ E A K IA + +L
Sbjct: 33 AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIA-DANL 91
Query: 112 GERITVIKGKVEEVELPEK-ADILIS 136
+RI +++G V + + + AD+++S
Sbjct: 92 NDRIQIVQGDVHNIPIEDNYADLIVS 117
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 61 DFIGRVVVDVGAGSGILS--LFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVI 118
DF GR VDVG GSG L+ + A+ A+ V + AR ++ + GER++++
Sbjct: 165 DFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLG-VARDNLSSLLA-GERVSLV 222
Query: 119 KGKVEEVELPEKADI-LISEPMGTL 142
G + + E+P DI L+S +G L
Sbjct: 223 GGDMLQ-EVPSNGDIYLLSRIIGDL 246
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase
From Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase
From Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE 96
V DVG GSGIL++ A + GAK V A + S+
Sbjct: 64 VADVGTGSGILAIAAHKLGAKSVLATDISD 93
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIK---GKV 122
++D+ +G+GI+ L + + VE E +A+ A++ +A N L ++I +I+ K+
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYN-QLEDQIEIIEYDLKKI 111
Query: 123 EEVELPEKADILISEP 138
++ E+ADI+ P
Sbjct: 112 TDLIPKERADIVTCNP 127
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTY-YAAVIENRADFI-GRVVVDV 70
+S+ + P+ A + Q + + +V +G A + + + I G+ V ++
Sbjct: 27 RSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQPELIAGKTVCEL 86
Query: 71 GAGSGILSLFAAQAGAKHVYAVE 93
GAG+G++S+ A AGA V A +
Sbjct: 87 GAGAGLVSIVAFLAGADQVVATD 109
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAE-YARKLIAGNPSLGERITVIKGKVEE 124
VV+++G G GIL+ A+ AK VY +E + E YA KL L I +I G +
Sbjct: 24 VVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL----KELYNNIEIIWGDALK 78
Query: 125 VEL 127
V+L
Sbjct: 79 VDL 81
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAE-YARKLIAGNPSLGERITVIKGKVEE 124
VV+++G G GIL+ A+ AK VY +E + E YA KL L I +I G +
Sbjct: 26 VVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL----KELYNNIEIIWGDALK 80
Query: 125 VEL 127
V+L
Sbjct: 81 VDL 83
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVE 123
G +VD+G G G +A + GA +V ++ SE AR AG P G IT + ++
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKX-LARARAAG-PDTG--ITYERADLD 99
Query: 124 EVELPEKA 131
++ LP+ +
Sbjct: 100 KLHLPQDS 107
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAE-YARKLIAGNPSLGERITVIKGKVEE 124
VV+++G G GIL+ A+ AK VY +E + E YA KL L I +I G +
Sbjct: 53 VVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL----KELYNNIEIIWGDALK 107
Query: 125 VEL 127
V+L
Sbjct: 108 VDL 110
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 44 DYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE 96
D VR + ++ R D G V+D+ AGSG L L A GA V VE+ +
Sbjct: 27 DRVRESLFN--IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQ 77
>pdb|4A1I|A Chain A, Ykud From B.Subtilis
pdb|4A1I|B Chain B, Ykud From B.Subtilis
pdb|4A1I|C Chain C, Ykud From B.Subtilis
pdb|4A1I|D Chain D, Ykud From B.Subtilis
pdb|4A1I|E Chain E, Ykud From B.Subtilis
pdb|4A1I|F Chain F, Ykud From B.Subtilis
pdb|4A1I|G Chain G, Ykud From B.Subtilis
pdb|4A1I|H Chain H, Ykud From B.Subtilis
pdb|4A1J|A Chain A, Ykud L,D-Transpeptidase From B.Subtilis
pdb|4A1J|B Chain B, Ykud L,D-Transpeptidase From B.Subtilis
Length = 165
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 104 LIAGNPSLGERIT-----VIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDR 158
L+ NPSL +T VI G + +P + I TL +N R+++TY IA +
Sbjct: 27 LLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGK 86
Query: 159 FL--VPMGKMF 167
L P G+ +
Sbjct: 87 ILTQTPTGEFY 97
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE 126
V+D+G G+G SLF + G + V + E E AR+ N V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLVDPSKEXLEVAREKGVKN--------VVEAKAEDLP 109
Query: 127 LPEKADILISEPMGTLLVNERMLETYVIARD-------RFLVPMGKMFPSVGRIH 174
P A + +G +L +YV +D R LVP G + +V +
Sbjct: 110 FPSGAFEAVL-ALGDVL-------SYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
>pdb|4A1K|A Chain A, Ykud L,D-Transpeptidase
Length = 165
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 104 LIAGNPSLGERIT-----VIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDR 158
L+ NPSL +T VI G + +P + I TL +N R+++TY IA +
Sbjct: 27 LLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGK 86
Query: 159 FL--VPMGKMF 167
L P G+ +
Sbjct: 87 ILTQTPTGEFY 97
>pdb|3ZQD|A Chain A, B. Subtilis L,D-Transpeptidase
pdb|4A52|A Chain A, Nmr Structure Of The Imipenem-Acylated L,D-Transpeptidase
From Bacillus Subtilis
Length = 175
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 104 LIAGNPSLGERIT-----VIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDR 158
L+ NPSL +T VI G + +P + I TL +N R+++TY IA +
Sbjct: 29 LLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGK 88
Query: 159 FL--VPMGKMF 167
L P G+ +
Sbjct: 89 ILTQTPTGEFY 99
>pdb|1SVD|A Chain A, The Structure Of Halothiobacillus Neapolitanus Rubisco
Length = 473
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 200 YGVDLTPLYGSAFHGYFSQPVVDAFDPRLLV---APAVSHVIDFKKTKEENLYEIDIPLK 256
Y ++ P +AF+ + + P+ D F+ +V V +V FK + L ++ PL
Sbjct: 78 YRIEDVPGDDAAFYAFIAYPI-DLFEEGSVVNVFTSLVGNVFGFKAVRGLRLEDVRFPLA 136
Query: 257 FISSVGTRVHGL 268
++ + G HG+
Sbjct: 137 YVKTCGGPPHGI 148
>pdb|1JLY|A Chain A, Crystal Structure Of Amaranthus Caudatus Agglutinin
pdb|1JLY|B Chain B, Crystal Structure Of Amaranthus Caudatus Agglutinin
Length = 304
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 284 WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI--AHSAQSYTI 331
W+T + P + C L +PLYV G +L + H Q+YT+
Sbjct: 78 WITASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQNYTV 127
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLG-ERITVI 118
G VV+VG G+G L+ Q K +Y +E R+++ S+G ER+ VI
Sbjct: 31 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELD------REMVENLKSIGDERLEVI 80
>pdb|1JLX|A Chain A, Agglutinin In Complex With T-Disaccharide
pdb|1JLX|B Chain B, Agglutinin In Complex With T-Disaccharide
Length = 303
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 284 WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI--AHSAQSYTI 331
W+T + P + C L +PLYV G +L + H Q+YT+
Sbjct: 77 WITASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQNYTV 126
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLG-ERITVI 118
G VV+VG G+G L+ Q K +Y +E R+++ S+G ER+ VI
Sbjct: 32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELD------REMVENLKSIGDERLEVI 81
>pdb|1Y7M|A Chain A, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
pdb|1Y7M|B Chain B, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
Length = 164
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 104 LIAGNPSLGERIT-----VIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDR 158
L+ NPSL +T VI G + +P + I TL +N R+ +TY IA +
Sbjct: 26 LLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVXKTYPIAVGK 85
Query: 159 FL--VPMGKMF 167
L P G+ +
Sbjct: 86 ILTQTPTGEFY 96
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVE 123
G V+ D+GAG+G S+ A G VYAVE S + R+ +P ++ G E
Sbjct: 35 GSVIADIGAGTGGYSVALANQGL-FVYAVEPSIV---XRQQAVVHP----QVEWFTGYAE 86
Query: 124 EVELPEKA 131
+ LP+K+
Sbjct: 87 NLALPDKS 94
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKL---IAGNPSLGERI 115
ADF VV + G+ IL +H + SE MA + R L +AG R+
Sbjct: 456 ADF---VVSNASVGANILGNLL-----EHKESAFLSEGMAVFRRPLPPAMAGKTIAETRL 507
Query: 116 TVIKG-KVEEVELPEKADILISEPMGTLL 143
+ G + +E P++ADILIS P T+L
Sbjct: 508 RPLTGCSIVAIEAPDRADILISPPPETIL 536
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 51 YYAAVIENRADFIGRVVVD-------VGAGSGILSLFAAQAGAKHVYAVEASEMAEYARK 103
+ A V++ + DF V+VD + AGSGIL L Q K V + + + K
Sbjct: 247 WRATVVDEKTDFEPGVLVDADKKGISIAAGSGILRLHQLQLPGKRVCSA-GDFINAHGDK 305
Query: 104 LIAGNPSLG 112
LI G G
Sbjct: 306 LIPGKTVFG 314
>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
Length = 462
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKL---IAGNPSLGERI 115
ADF VV + G+ IL +H + SE MA + R L +AG R+
Sbjct: 353 ADF---VVSNASVGANILGNLL-----EHKESAFLSEGMAVFRRPLPPAMAGKTIAETRL 404
Query: 116 TVIKG-KVEEVELPEKADILISEPMGTLL 143
+ G + +E P++ADILIS P T+L
Sbjct: 405 RPLTGCSIVAIEAPDRADILISPPPETIL 433
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKL---IAGNPSLGERI 115
ADF VV + G+ IL +H + SE MA + R L +AG R+
Sbjct: 456 ADF---VVSNASVGANILGNLL-----EHKESAFLSEGMAVFRRPLPPAMAGKTIAETRL 507
Query: 116 TVIKG-KVEEVELPEKADILISEPMGTLL 143
+ G + +E P++ADILIS P T+L
Sbjct: 508 RPLTGCSIVAIEAPDRADILISPPPETIL 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,807,484
Number of Sequences: 62578
Number of extensions: 550283
Number of successful extensions: 1254
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 54
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)