Query 015038
Match_columns 414
No_of_seqs 612 out of 3055
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1500 Protein arginine N-met 100.0 3.8E-95 8E-100 681.7 26.9 398 3-413 118-517 (517)
2 KOG1499 Protein arginine N-met 100.0 3.4E-62 7.4E-67 468.1 28.9 310 21-341 18-331 (346)
3 PF05185 PRMT5: PRMT5 arginine 100.0 9.6E-45 2.1E-49 368.8 28.7 270 41-338 156-447 (448)
4 KOG0822 Protein kinase inhibit 100.0 1.3E-30 2.9E-35 258.6 21.0 267 44-338 341-624 (649)
5 PTZ00357 methyltransferase; Pr 99.9 2.4E-26 5.2E-31 233.6 24.4 265 66-339 703-1038(1072)
6 KOG1501 Arginine N-methyltrans 99.8 2.1E-20 4.6E-25 182.3 13.4 287 39-337 36-350 (636)
7 PF12847 Methyltransf_18: Meth 99.7 1.8E-16 4E-21 131.5 12.7 107 63-170 1-111 (112)
8 COG2226 UbiE Methylase involve 99.7 9.7E-16 2.1E-20 143.4 14.3 117 49-170 37-156 (238)
9 PF01209 Ubie_methyltran: ubiE 99.6 3.9E-15 8.5E-20 140.1 11.0 115 51-170 35-153 (233)
10 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.7E-15 1E-19 136.8 8.9 104 62-172 58-163 (243)
11 PLN02396 hexaprenyldihydroxybe 99.6 9E-15 2E-19 143.6 10.8 105 62-171 130-236 (322)
12 PLN02233 ubiquinone biosynthes 99.6 6.7E-14 1.4E-18 134.2 16.3 116 51-170 61-182 (261)
13 PF05175 MTS: Methyltransferas 99.6 2E-14 4.4E-19 129.0 11.7 104 63-168 31-138 (170)
14 PF13847 Methyltransf_31: Meth 99.6 3.1E-14 6.6E-19 125.2 12.5 106 62-172 2-112 (152)
15 PRK11207 tellurite resistance 99.6 3.4E-14 7.4E-19 130.6 13.0 108 57-168 24-132 (197)
16 TIGR02752 MenG_heptapren 2-hep 99.6 1E-13 2.2E-18 130.3 16.2 117 48-169 30-150 (231)
17 TIGR00477 tehB tellurite resis 99.6 3.3E-14 7.1E-19 130.5 12.1 108 56-168 23-131 (195)
18 PF08241 Methyltransf_11: Meth 99.5 3.9E-14 8.5E-19 113.1 10.1 93 68-168 1-95 (95)
19 PRK11036 putative S-adenosyl-L 99.5 5.9E-14 1.3E-18 134.1 12.9 103 62-169 43-148 (255)
20 PF03848 TehB: Tellurite resis 99.5 1.5E-13 3.2E-18 124.7 13.8 107 57-168 24-131 (192)
21 TIGR00138 gidB 16S rRNA methyl 99.5 1.4E-13 2.9E-18 124.9 13.6 99 62-169 41-141 (181)
22 PF02353 CMAS: Mycolic acid cy 99.5 1.2E-13 2.5E-18 133.0 13.8 114 53-171 52-167 (273)
23 PF06325 PrmA: Ribosomal prote 99.5 4.3E-14 9.2E-19 136.9 10.8 109 49-169 149-258 (295)
24 PRK15068 tRNA mo(5)U34 methylt 99.5 1.2E-13 2.6E-18 136.3 13.9 113 53-169 112-225 (322)
25 COG2230 Cfa Cyclopropane fatty 99.5 9.6E-14 2.1E-18 132.3 12.4 116 52-171 61-177 (283)
26 PLN02244 tocopherol O-methyltr 99.5 2E-13 4.3E-18 135.8 14.9 105 62-170 117-223 (340)
27 COG2264 PrmA Ribosomal protein 99.5 7.9E-14 1.7E-18 133.9 11.4 110 52-170 153-263 (300)
28 PRK00107 gidB 16S rRNA methylt 99.5 2E-13 4.2E-18 124.3 13.2 99 63-170 45-145 (187)
29 COG4076 Predicted RNA methylas 99.5 2.8E-13 6E-18 119.6 13.5 135 37-180 10-145 (252)
30 TIGR00452 methyltransferase, p 99.5 2.4E-13 5.2E-18 133.1 14.3 114 53-170 111-225 (314)
31 COG4123 Predicted O-methyltran 99.5 9.7E-14 2.1E-18 130.0 10.8 106 61-167 42-167 (248)
32 PF13659 Methyltransf_26: Meth 99.5 1.9E-13 4.2E-18 114.2 9.7 105 64-169 1-114 (117)
33 KOG1270 Methyltransferases [Co 99.5 7.7E-14 1.7E-18 129.6 7.8 102 64-171 90-196 (282)
34 PRK15001 SAM-dependent 23S rib 99.5 6.5E-13 1.4E-17 132.9 14.4 116 54-170 219-340 (378)
35 PRK12335 tellurite resistance 99.5 3.9E-13 8.5E-18 130.7 12.6 102 62-168 119-221 (287)
36 PRK15451 tRNA cmo(5)U34 methyl 99.5 4.1E-13 8.9E-18 127.7 11.1 106 62-170 55-164 (247)
37 TIGR00537 hemK_rel_arch HemK-r 99.4 1.5E-12 3.3E-17 117.6 12.6 104 61-169 17-139 (179)
38 TIGR02469 CbiT precorrin-6Y C5 99.4 4E-12 8.6E-17 106.9 14.0 109 55-171 11-123 (124)
39 PRK14103 trans-aconitate 2-met 99.4 1.2E-12 2.5E-17 125.2 11.9 105 54-170 20-126 (255)
40 TIGR00406 prmA ribosomal prote 99.4 2.2E-12 4.9E-17 125.4 13.8 100 62-169 158-258 (288)
41 PF05401 NodS: Nodulation prot 99.4 1.7E-12 3.6E-17 116.9 11.8 116 51-171 31-147 (201)
42 PRK10258 biotin biosynthesis p 99.4 2E-12 4.4E-17 123.1 13.0 105 54-169 33-139 (251)
43 PRK01683 trans-aconitate 2-met 99.4 2E-12 4.3E-17 123.6 12.4 107 54-170 22-130 (258)
44 TIGR00740 methyltransferase, p 99.4 2.1E-12 4.6E-17 122.1 12.2 106 62-170 52-161 (239)
45 KOG1540 Ubiquinone biosynthesi 99.4 5.7E-12 1.2E-16 116.6 14.4 113 51-167 88-211 (296)
46 PTZ00098 phosphoethanolamine N 99.4 2.5E-12 5.4E-17 123.5 12.5 113 53-170 42-156 (263)
47 PRK14967 putative methyltransf 99.4 5.1E-12 1.1E-16 118.4 14.3 106 61-169 34-158 (223)
48 smart00828 PKS_MT Methyltransf 99.4 1.9E-12 4.2E-17 120.9 10.9 102 65-170 1-104 (224)
49 PF13649 Methyltransf_25: Meth 99.4 1.5E-12 3.3E-17 106.4 8.7 94 67-164 1-101 (101)
50 PRK00517 prmA ribosomal protei 99.4 4.2E-12 9.2E-17 121.0 12.7 94 62-169 118-212 (250)
51 PRK08287 cobalt-precorrin-6Y C 99.4 1.2E-11 2.6E-16 112.6 14.8 108 53-169 21-130 (187)
52 PRK00377 cbiT cobalt-precorrin 99.4 7.7E-12 1.7E-16 115.0 13.6 110 53-169 30-144 (198)
53 PRK11873 arsM arsenite S-adeno 99.4 7E-12 1.5E-16 120.9 13.6 105 61-170 75-183 (272)
54 TIGR03533 L3_gln_methyl protei 99.4 1.1E-11 2.3E-16 120.4 14.8 108 63-171 121-252 (284)
55 PLN02336 phosphoethanolamine N 99.4 7.9E-12 1.7E-16 129.9 14.2 110 55-170 258-369 (475)
56 PRK00216 ubiE ubiquinone/menaq 99.4 2.6E-11 5.7E-16 113.8 16.3 115 51-169 39-157 (239)
57 COG2813 RsmC 16S RNA G1207 met 99.4 8E-12 1.7E-16 119.6 12.8 116 53-171 148-267 (300)
58 PRK09489 rsmC 16S ribosomal RN 99.3 1E-11 2.2E-16 123.3 13.6 112 55-170 188-303 (342)
59 PRK13944 protein-L-isoaspartat 99.3 1.6E-11 3.4E-16 113.6 14.0 111 49-169 58-172 (205)
60 PRK06922 hypothetical protein; 99.3 1.5E-11 3.2E-16 128.9 14.4 106 62-170 417-537 (677)
61 PRK11805 N5-glutamine S-adenos 99.3 2E-11 4.3E-16 119.6 14.3 106 65-171 135-264 (307)
62 PRK00121 trmB tRNA (guanine-N( 99.3 1.1E-11 2.4E-16 114.3 11.9 106 63-170 40-156 (202)
63 TIGR00536 hemK_fam HemK family 99.3 2.2E-11 4.7E-16 118.3 14.3 124 48-172 98-246 (284)
64 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.2E-11 9.1E-16 111.2 15.1 114 50-170 26-143 (223)
65 PF08003 Methyltransf_9: Prote 99.3 1.7E-11 3.8E-16 117.2 12.6 112 53-171 105-220 (315)
66 PRK08317 hypothetical protein; 99.3 3.5E-11 7.6E-16 112.6 14.1 115 51-171 7-125 (241)
67 TIGR02021 BchM-ChlM magnesium 99.3 3.2E-11 6.8E-16 112.6 13.4 113 51-168 41-156 (219)
68 PRK15128 23S rRNA m(5)C1962 me 99.3 1.7E-11 3.6E-16 124.0 12.3 113 62-176 219-345 (396)
69 PRK11705 cyclopropane fatty ac 99.3 2.3E-11 5E-16 122.7 13.3 110 53-170 157-267 (383)
70 TIGR00080 pimt protein-L-isoas 99.3 4E-11 8.8E-16 111.6 13.7 108 51-169 65-176 (215)
71 PRK14968 putative methyltransf 99.3 4.1E-11 8.8E-16 108.5 13.3 107 62-170 22-148 (188)
72 PF08242 Methyltransf_12: Meth 99.3 7.1E-13 1.5E-17 107.7 1.2 94 68-166 1-99 (99)
73 PF13489 Methyltransf_23: Meth 99.3 1.6E-11 3.4E-16 108.0 9.7 95 61-171 20-116 (161)
74 TIGR01177 conserved hypothetic 99.3 3.8E-11 8.2E-16 119.0 13.6 116 51-169 170-293 (329)
75 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.5E-11 5.5E-16 131.4 13.2 109 63-172 538-658 (702)
76 TIGR02072 BioC biotin biosynth 99.3 4.8E-11 1E-15 111.8 13.3 99 62-169 33-134 (240)
77 PRK05785 hypothetical protein; 99.3 3.8E-11 8.3E-16 112.7 12.5 89 63-164 51-141 (226)
78 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5E-11 1.1E-15 109.5 12.5 117 49-171 38-160 (199)
79 PLN02490 MPBQ/MSBQ methyltrans 99.3 4.9E-11 1.1E-15 117.8 13.1 100 62-169 112-214 (340)
80 TIGR02716 C20_methyl_CrtF C-20 99.3 7.4E-11 1.6E-15 115.7 14.1 115 53-170 139-254 (306)
81 PRK13942 protein-L-isoaspartat 99.3 6E-11 1.3E-15 110.3 12.7 110 49-169 62-175 (212)
82 TIGR03534 RF_mod_PrmC protein- 99.3 1.1E-10 2.3E-15 110.8 14.4 117 50-169 75-216 (251)
83 PRK05134 bifunctional 3-demeth 99.2 8.5E-11 1.8E-15 110.6 13.4 110 54-170 39-151 (233)
84 PRK01544 bifunctional N5-gluta 99.2 7E-11 1.5E-15 123.3 13.9 108 63-171 138-270 (506)
85 PRK04266 fibrillarin; Provisio 99.2 1E-10 2.2E-15 109.6 13.6 103 58-169 67-175 (226)
86 PRK14966 unknown domain/N5-glu 99.2 9.9E-11 2.1E-15 117.7 14.0 122 44-170 234-381 (423)
87 COG2263 Predicted RNA methylas 99.2 1.1E-10 2.4E-15 104.1 12.6 81 57-142 39-120 (198)
88 TIGR03840 TMPT_Se_Te thiopurin 99.2 8E-11 1.7E-15 109.4 12.2 106 62-169 33-151 (213)
89 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.8E-11 1.3E-15 108.8 11.1 106 63-170 16-132 (194)
90 TIGR01983 UbiG ubiquinone bios 99.2 1.3E-10 2.9E-15 108.4 13.7 136 27-170 11-149 (224)
91 PLN03075 nicotianamine synthas 99.2 1.6E-10 3.5E-15 111.5 14.5 107 62-170 122-233 (296)
92 PRK09328 N5-glutamine S-adenos 99.2 1.5E-10 3.1E-15 111.6 14.3 121 47-169 92-237 (275)
93 COG2890 HemK Methylase of poly 99.2 1.3E-10 2.7E-15 112.5 13.4 121 47-171 95-239 (280)
94 PHA03412 putative methyltransf 99.2 6.1E-11 1.3E-15 110.5 10.5 101 63-170 49-163 (241)
95 PHA03411 putative methyltransf 99.2 1.8E-10 3.9E-15 109.7 13.8 138 63-209 64-222 (279)
96 COG2242 CobL Precorrin-6B meth 99.2 2.3E-10 5E-15 102.3 13.7 113 51-172 22-137 (187)
97 TIGR03704 PrmC_rel_meth putati 99.2 1.8E-10 3.9E-15 109.8 13.9 102 64-170 87-216 (251)
98 PRK07402 precorrin-6B methylas 99.2 2.3E-10 5E-15 104.9 13.9 109 53-170 30-142 (196)
99 PLN02336 phosphoethanolamine N 99.2 8.6E-11 1.9E-15 122.2 12.3 113 53-171 27-143 (475)
100 KOG4300 Predicted methyltransf 99.2 1E-10 2.3E-15 105.1 10.3 101 65-170 78-182 (252)
101 COG4106 Tam Trans-aconitate me 99.2 3.9E-11 8.4E-16 108.6 7.4 111 55-175 22-134 (257)
102 PRK06202 hypothetical protein; 99.2 2E-10 4.3E-15 108.1 12.7 101 60-167 57-164 (232)
103 TIGR00095 RNA methyltransferas 99.2 2.5E-10 5.4E-15 104.2 12.7 107 62-171 48-160 (189)
104 PRK04457 spermidine synthase; 99.2 1.8E-10 4E-15 110.4 12.3 118 51-169 53-176 (262)
105 PRK00312 pcm protein-L-isoaspa 99.2 4.4E-10 9.5E-15 104.4 13.8 109 49-169 64-174 (212)
106 COG1092 Predicted SAM-dependen 99.2 1.4E-10 2.9E-15 116.2 11.0 116 62-177 216-343 (393)
107 PLN02781 Probable caffeoyl-CoA 99.2 2.2E-10 4.9E-15 108.1 11.7 103 62-171 67-179 (234)
108 PRK07580 Mg-protoporphyrin IX 99.2 5.6E-10 1.2E-14 104.5 14.1 100 62-166 62-162 (230)
109 smart00138 MeTrc Methyltransfe 99.2 9E-11 2E-15 112.7 8.9 108 63-171 99-243 (264)
110 PRK10901 16S rRNA methyltransf 99.2 4.7E-10 1E-14 115.1 14.2 114 58-174 239-376 (427)
111 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.5E-10 9.8E-15 107.9 12.9 113 59-173 67-202 (264)
112 smart00650 rADc Ribosomal RNA 99.1 4.1E-10 9E-15 100.8 11.8 108 54-170 4-113 (169)
113 COG2519 GCD14 tRNA(1-methylade 99.1 5.3E-10 1.2E-14 104.3 12.7 107 53-168 84-193 (256)
114 PRK14904 16S rRNA methyltransf 99.1 5.6E-10 1.2E-14 115.1 14.3 115 58-174 245-381 (445)
115 PLN02585 magnesium protoporphy 99.1 4.7E-10 1E-14 110.1 13.0 101 62-167 143-247 (315)
116 PF10672 Methyltrans_SAM: S-ad 99.1 5.9E-10 1.3E-14 107.5 13.1 113 62-175 122-243 (286)
117 PRK13255 thiopurine S-methyltr 99.1 5.5E-10 1.2E-14 104.2 12.4 104 62-167 36-152 (218)
118 PRK00811 spermidine synthase; 99.1 4.4E-10 9.6E-15 109.0 12.1 113 62-174 75-195 (283)
119 PRK14902 16S rRNA methyltransf 99.1 5.3E-10 1.1E-14 115.3 13.3 116 57-174 244-383 (444)
120 TIGR03587 Pse_Me-ase pseudamin 99.1 6E-10 1.3E-14 103.0 12.1 97 62-168 42-140 (204)
121 COG2518 Pcm Protein-L-isoaspar 99.1 8.9E-10 1.9E-14 100.6 12.6 109 51-171 60-170 (209)
122 KOG1271 Methyltransferases [Ge 99.1 3.6E-10 7.9E-15 99.7 9.6 107 66-173 70-184 (227)
123 PRK03522 rumB 23S rRNA methylu 99.1 7.4E-10 1.6E-14 109.2 12.9 109 55-172 165-276 (315)
124 PRK14903 16S rRNA methyltransf 99.1 7.6E-10 1.6E-14 113.5 13.4 114 58-173 232-369 (431)
125 TIGR03438 probable methyltrans 99.1 9.8E-10 2.1E-14 107.6 13.6 108 63-172 63-179 (301)
126 cd02440 AdoMet_MTases S-adenos 99.1 8.4E-10 1.8E-14 87.9 10.9 100 66-169 1-103 (107)
127 PRK14901 16S rRNA methyltransf 99.1 7.1E-10 1.5E-14 114.0 13.1 115 58-174 247-388 (434)
128 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.1E-09 2.3E-14 109.6 13.7 113 56-170 115-235 (390)
129 COG0742 N6-adenine-specific me 99.1 1.5E-09 3.3E-14 97.5 13.2 122 50-172 28-156 (187)
130 TIGR00563 rsmB ribosomal RNA s 99.1 9.9E-10 2.1E-14 112.7 13.6 118 56-174 231-372 (426)
131 PF03602 Cons_hypoth95: Conser 99.1 3.3E-10 7.3E-15 102.8 8.8 115 53-171 30-154 (183)
132 PLN02476 O-methyltransferase 99.1 2.7E-09 5.9E-14 102.5 14.7 104 61-171 116-229 (278)
133 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.6E-09 3.6E-14 111.6 13.9 114 49-172 283-402 (443)
134 PRK11188 rrmJ 23S rRNA methylt 99.1 1.4E-09 3.1E-14 100.9 11.8 97 61-169 49-164 (209)
135 KOG2904 Predicted methyltransf 99.1 1.8E-09 3.9E-14 101.1 12.1 125 46-171 128-286 (328)
136 PRK13943 protein-L-isoaspartat 99.0 2.7E-09 5.8E-14 105.0 13.6 108 51-169 68-179 (322)
137 TIGR02085 meth_trns_rumB 23S r 99.0 3.6E-09 7.7E-14 106.7 14.1 101 62-171 232-335 (374)
138 PRK11088 rrmA 23S rRNA methylt 99.0 1.1E-09 2.3E-14 105.8 9.6 90 63-169 85-180 (272)
139 PF01135 PCMT: Protein-L-isoas 99.0 3E-09 6.4E-14 98.5 11.7 109 49-168 58-170 (209)
140 TIGR00438 rrmJ cell division p 99.0 2.2E-09 4.7E-14 97.8 10.3 98 60-169 29-145 (188)
141 PF01596 Methyltransf_3: O-met 99.0 4.9E-09 1.1E-13 96.7 12.5 114 49-172 34-157 (205)
142 PTZ00146 fibrillarin; Provisio 99.0 4.9E-09 1.1E-13 101.0 11.8 112 49-169 115-236 (293)
143 PLN02672 methionine S-methyltr 99.0 3.9E-09 8.4E-14 117.3 12.6 127 46-172 100-280 (1082)
144 PF10294 Methyltransf_16: Puta 99.0 5.5E-09 1.2E-13 94.0 11.4 106 60-168 42-154 (173)
145 PLN02366 spermidine synthase 99.0 1E-08 2.2E-13 100.4 14.1 115 62-176 90-212 (308)
146 PRK01581 speE spermidine synth 99.0 7E-09 1.5E-13 102.5 12.7 111 62-172 149-270 (374)
147 TIGR00417 speE spermidine synt 98.9 1.1E-08 2.4E-13 98.7 13.5 111 62-172 71-188 (270)
148 PF03291 Pox_MCEL: mRNA cappin 98.9 6.2E-09 1.4E-13 102.8 11.7 130 40-169 39-185 (331)
149 PRK03612 spermidine synthase; 98.9 1E-08 2.2E-13 107.6 13.7 113 62-174 296-419 (521)
150 COG2521 Predicted archaeal met 98.9 1.1E-09 2.3E-14 100.4 5.4 121 49-169 118-244 (287)
151 COG4976 Predicted methyltransf 98.9 6.1E-10 1.3E-14 101.7 3.8 133 27-172 89-227 (287)
152 PF08704 GCD14: tRNA methyltra 98.9 7.5E-09 1.6E-13 97.9 11.3 106 53-167 30-143 (247)
153 PF02475 Met_10: Met-10+ like- 98.9 8.8E-09 1.9E-13 94.5 10.9 104 53-166 93-198 (200)
154 TIGR00479 rumA 23S rRNA (uraci 98.9 1.5E-08 3.2E-13 104.2 13.9 110 52-170 281-396 (431)
155 TIGR02081 metW methionine bios 98.9 1E-08 2.2E-13 93.9 10.5 89 63-163 13-105 (194)
156 PTZ00338 dimethyladenosine tra 98.9 1.2E-08 2.5E-13 99.5 11.0 90 51-143 24-114 (294)
157 PF01170 UPF0020: Putative RNA 98.9 2.2E-08 4.7E-13 90.7 11.9 118 49-167 14-148 (179)
158 COG4122 Predicted O-methyltran 98.9 1.6E-08 3.4E-13 93.7 10.9 117 48-174 47-170 (219)
159 PRK14896 ksgA 16S ribosomal RN 98.9 1.4E-08 2.9E-13 97.4 10.8 87 50-142 16-103 (258)
160 PLN02589 caffeoyl-CoA O-methyl 98.8 2.7E-08 5.8E-13 94.3 10.9 104 62-172 78-192 (247)
161 PRK00274 ksgA 16S ribosomal RN 98.8 1.7E-08 3.6E-13 97.5 9.7 86 51-142 30-117 (272)
162 COG1041 Predicted DNA modifica 98.8 3.6E-08 7.7E-13 96.4 11.8 117 49-168 183-308 (347)
163 PF00891 Methyltransf_2: O-met 98.8 8.4E-08 1.8E-12 90.8 13.9 107 54-171 91-200 (241)
164 KOG2899 Predicted methyltransf 98.8 1.9E-08 4.2E-13 92.7 9.0 109 60-169 55-208 (288)
165 PRK13256 thiopurine S-methyltr 98.8 5.4E-08 1.2E-12 90.9 12.1 106 62-169 42-162 (226)
166 PF05724 TPMT: Thiopurine S-me 98.8 7.5E-08 1.6E-12 89.8 12.2 107 59-167 33-152 (218)
167 KOG1541 Predicted protein carb 98.8 2.4E-08 5.3E-13 90.8 8.3 100 63-170 50-160 (270)
168 KOG1975 mRNA cap methyltransfe 98.7 3.4E-08 7.3E-13 94.6 9.0 108 62-169 116-236 (389)
169 PRK04338 N(2),N(2)-dimethylgua 98.7 6.4E-08 1.4E-12 97.6 11.2 97 64-169 58-157 (382)
170 KOG3010 Methyltransferase [Gen 98.7 1.7E-08 3.7E-13 93.2 6.4 99 66-170 36-137 (261)
171 TIGR02143 trmA_only tRNA (urac 98.7 1.2E-07 2.6E-12 94.8 13.1 96 65-171 199-312 (353)
172 PF07021 MetW: Methionine bios 98.7 4.7E-08 1E-12 88.1 8.9 89 62-162 12-104 (193)
173 PRK11727 23S rRNA mA1618 methy 98.7 8.4E-08 1.8E-12 94.2 11.2 80 63-143 114-202 (321)
174 KOG0820 Ribosomal RNA adenine 98.7 1E-07 2.3E-12 89.4 10.3 90 49-141 44-134 (315)
175 KOG3191 Predicted N6-DNA-methy 98.7 2.4E-07 5.3E-12 82.0 12.0 103 63-168 43-166 (209)
176 PRK05031 tRNA (uracil-5-)-meth 98.7 1.6E-07 3.5E-12 94.3 12.1 97 65-172 208-322 (362)
177 TIGR00755 ksgA dimethyladenosi 98.7 2.6E-07 5.6E-12 88.2 12.9 85 51-141 17-105 (253)
178 COG2520 Predicted methyltransf 98.7 1.6E-07 3.4E-12 92.4 10.9 98 62-167 187-286 (341)
179 KOG2361 Predicted methyltransf 98.6 4.7E-08 1E-12 90.3 6.6 103 66-172 74-185 (264)
180 KOG3420 Predicted RNA methylas 98.6 9.9E-08 2.1E-12 81.4 7.9 86 54-142 39-126 (185)
181 COG0116 Predicted N6-adenine-s 98.6 4E-07 8.6E-12 90.3 13.0 122 49-171 177-345 (381)
182 PF05891 Methyltransf_PK: AdoM 98.6 6.7E-08 1.4E-12 88.8 6.8 105 64-171 56-162 (218)
183 TIGR00478 tly hemolysin TlyA f 98.6 2.3E-07 5E-12 86.9 10.6 96 53-167 65-168 (228)
184 PLN02823 spermine synthase 98.6 2.8E-07 6.2E-12 91.2 11.1 109 63-171 103-221 (336)
185 COG2265 TrmA SAM-dependent met 98.6 4.1E-07 9E-12 92.9 12.3 115 49-172 279-398 (432)
186 COG0030 KsgA Dimethyladenosine 98.6 2.7E-07 5.9E-12 87.4 10.2 87 51-142 18-107 (259)
187 PF02390 Methyltransf_4: Putat 98.5 4.7E-07 1E-11 83.0 10.3 104 65-170 19-133 (195)
188 COG0421 SpeE Spermidine syntha 98.5 1.6E-06 3.5E-11 83.7 13.9 114 64-177 77-197 (282)
189 PRK11783 rlmL 23S rRNA m(2)G24 98.5 8.2E-07 1.8E-11 96.6 12.8 118 49-167 175-344 (702)
190 TIGR00308 TRM1 tRNA(guanine-26 98.5 7.4E-07 1.6E-11 89.5 11.3 98 64-170 45-147 (374)
191 PRK11933 yebU rRNA (cytosine-C 98.5 1.6E-06 3.5E-11 89.5 13.1 119 60-182 110-252 (470)
192 PF09445 Methyltransf_15: RNA 98.5 9.6E-07 2.1E-11 78.2 9.7 74 65-140 1-79 (163)
193 PRK04148 hypothetical protein; 98.5 2.3E-06 5E-11 73.2 11.3 74 53-136 6-83 (134)
194 COG3963 Phospholipid N-methylt 98.4 2.1E-06 4.6E-11 75.2 10.5 111 51-169 36-155 (194)
195 COG3897 Predicted methyltransf 98.4 8.1E-07 1.8E-11 79.7 7.9 104 53-165 69-173 (218)
196 COG0220 Predicted S-adenosylme 98.4 2.8E-06 6E-11 79.6 12.0 104 64-169 49-163 (227)
197 PF12147 Methyltransf_20: Puta 98.4 5E-06 1.1E-10 79.3 13.7 121 53-174 125-253 (311)
198 PLN02232 ubiquinone biosynthes 98.4 8.3E-07 1.8E-11 78.8 7.9 78 90-170 1-81 (160)
199 PF05958 tRNA_U5-meth_tr: tRNA 98.4 5E-06 1.1E-10 83.2 14.0 90 51-144 185-292 (352)
200 PF01564 Spermine_synth: Sperm 98.4 9E-07 1.9E-11 84.2 8.2 108 63-170 76-191 (246)
201 PF02527 GidB: rRNA small subu 98.4 4.8E-06 1E-10 75.6 12.1 98 66-172 51-150 (184)
202 PF05148 Methyltransf_8: Hypot 98.3 2.8E-06 6.1E-11 77.5 9.8 88 63-172 72-160 (219)
203 PF01739 CheR: CheR methyltran 98.3 2.3E-06 5.1E-11 78.4 8.9 108 63-171 31-176 (196)
204 PF05219 DREV: DREV methyltran 98.3 4E-06 8.6E-11 79.0 10.4 94 63-171 94-189 (265)
205 PRK10611 chemotaxis methyltran 98.3 1.7E-06 3.8E-11 83.7 7.6 106 65-171 117-263 (287)
206 PF00398 RrnaAD: Ribosomal RNA 98.3 3.1E-06 6.6E-11 81.3 8.8 88 48-140 15-107 (262)
207 PF02384 N6_Mtase: N-6 DNA Met 98.3 8E-06 1.7E-10 80.2 11.9 119 49-167 32-180 (311)
208 PF06080 DUF938: Protein of un 98.3 5.3E-06 1.1E-10 75.9 9.6 116 51-169 14-140 (204)
209 PRK00536 speE spermidine synth 98.2 1E-05 2.2E-10 77.3 11.7 105 62-177 71-178 (262)
210 PF08123 DOT1: Histone methyla 98.2 1.2E-05 2.6E-10 74.3 11.5 110 54-167 33-155 (205)
211 COG1189 Predicted rRNA methyla 98.2 7.4E-06 1.6E-10 76.0 9.9 105 51-168 67-176 (245)
212 KOG1661 Protein-L-isoaspartate 98.2 5.3E-06 1.2E-10 75.3 8.1 99 61-168 80-191 (237)
213 KOG3045 Predicted RNA methylas 98.2 7E-06 1.5E-10 76.7 8.9 87 62-172 179-266 (325)
214 KOG1663 O-methyltransferase [S 98.2 1.6E-05 3.6E-10 73.3 11.0 108 61-175 71-188 (237)
215 KOG1501 Arginine N-methyltrans 98.1 5.9E-06 1.3E-10 82.1 7.4 187 128-335 427-630 (636)
216 KOG2940 Predicted methyltransf 98.1 3.3E-06 7.1E-11 77.5 4.8 98 64-168 73-172 (325)
217 COG0357 GidB Predicted S-adeno 98.1 3E-05 6.5E-10 71.8 10.5 95 64-167 68-165 (215)
218 KOG2187 tRNA uracil-5-methyltr 98.0 2.3E-05 5E-10 79.8 9.9 117 50-175 370-494 (534)
219 PRK00050 16S rRNA m(4)C1402 me 98.0 1.8E-05 3.9E-10 77.0 8.8 82 53-138 9-98 (296)
220 PF07942 N2227: N2227-like pro 98.0 7.7E-05 1.7E-09 71.4 12.9 100 63-166 56-198 (270)
221 KOG2915 tRNA(1-methyladenosine 98.0 5.5E-05 1.2E-09 71.3 11.3 104 53-165 95-204 (314)
222 PRK10742 putative methyltransf 98.0 5.7E-05 1.2E-09 71.2 10.8 89 54-143 77-177 (250)
223 PRK11760 putative 23S rRNA C24 98.0 4.3E-05 9.3E-10 75.0 10.1 86 62-163 210-296 (357)
224 PF04816 DUF633: Family of unk 98.0 4.9E-05 1.1E-09 70.2 9.7 103 67-182 1-106 (205)
225 PRK01544 bifunctional N5-gluta 97.9 4.9E-05 1.1E-09 79.7 10.7 105 63-169 347-461 (506)
226 COG1352 CheR Methylase of chem 97.9 4.3E-05 9.3E-10 73.2 9.3 107 64-171 97-242 (268)
227 PF01728 FtsJ: FtsJ-like methy 97.9 1.8E-05 3.9E-10 71.4 6.1 95 63-169 23-138 (181)
228 PF05971 Methyltransf_10: Prot 97.9 7.8E-05 1.7E-09 72.3 10.6 95 50-145 84-192 (299)
229 PF09243 Rsm22: Mitochondrial 97.9 0.00014 3E-09 70.4 12.3 118 52-172 22-142 (274)
230 COG0144 Sun tRNA and rRNA cyto 97.9 0.00013 2.9E-09 73.0 11.9 123 57-183 150-299 (355)
231 TIGR02987 met_A_Alw26 type II 97.9 9.4E-05 2E-09 78.1 11.3 78 63-142 31-124 (524)
232 COG4262 Predicted spermidine s 97.8 0.00014 3E-09 71.2 10.0 114 64-177 290-414 (508)
233 KOG3178 Hydroxyindole-O-methyl 97.8 0.00016 3.6E-09 70.8 10.5 97 65-171 179-276 (342)
234 PF03059 NAS: Nicotianamine sy 97.8 0.00025 5.4E-09 68.2 11.2 104 64-169 121-229 (276)
235 COG0500 SmtA SAM-dependent met 97.7 0.00039 8.4E-09 58.1 11.2 99 67-172 52-157 (257)
236 COG0293 FtsJ 23S rRNA methylas 97.7 0.00018 3.9E-09 65.9 9.4 95 62-168 44-157 (205)
237 PF03141 Methyltransf_29: Puta 97.7 2.9E-05 6.3E-10 79.2 4.6 115 49-174 99-223 (506)
238 PF13578 Methyltransf_24: Meth 97.7 2.5E-05 5.4E-10 64.0 2.9 97 68-169 1-104 (106)
239 PF01269 Fibrillarin: Fibrilla 97.7 0.00054 1.2E-08 63.3 11.9 113 49-170 56-178 (229)
240 PF13679 Methyltransf_32: Meth 97.7 0.0002 4.3E-09 62.2 8.5 75 62-136 24-105 (141)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00038 8.1E-09 67.7 11.1 113 59-173 81-222 (283)
242 TIGR01444 fkbM_fam methyltrans 97.6 0.00015 3.2E-09 62.5 7.2 57 66-124 1-59 (143)
243 KOG2730 Methylase [General fun 97.6 4.6E-05 1E-09 69.7 3.7 89 49-139 79-174 (263)
244 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.0002 4.4E-09 68.2 7.1 109 61-169 54-198 (256)
245 PHA01634 hypothetical protein 97.5 0.00046 9.9E-09 58.0 7.2 73 61-138 26-100 (156)
246 TIGR03439 methyl_EasF probable 97.4 0.0028 6.1E-08 62.5 13.7 113 53-170 68-197 (319)
247 KOG1709 Guanidinoacetate methy 97.4 0.00095 2.1E-08 61.1 8.9 100 62-167 100-203 (271)
248 KOG3201 Uncharacterized conser 97.4 0.00013 2.8E-09 63.8 2.8 126 49-183 15-147 (201)
249 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0013 2.7E-08 66.5 9.0 101 64-172 50-156 (377)
250 COG1889 NOP1 Fibrillarin-like 97.2 0.0028 6.2E-08 57.5 10.1 113 49-170 59-180 (231)
251 KOG1269 SAM-dependent methyltr 97.2 0.00058 1.3E-08 68.3 6.2 104 62-169 109-214 (364)
252 PF11968 DUF3321: Putative met 97.2 0.0011 2.4E-08 61.1 7.3 83 65-165 53-139 (219)
253 KOG4058 Uncharacterized conser 97.2 0.0019 4.1E-08 55.7 8.2 108 55-170 64-172 (199)
254 PF04672 Methyltransf_19: S-ad 97.2 0.0034 7.3E-08 59.9 10.5 121 49-172 53-192 (267)
255 KOG1331 Predicted methyltransf 97.1 0.00038 8.2E-09 66.4 3.6 95 63-168 45-141 (293)
256 COG5459 Predicted rRNA methyla 97.1 0.0011 2.4E-08 64.7 6.7 130 39-169 89-224 (484)
257 COG2384 Predicted SAM-dependen 97.1 0.006 1.3E-07 56.3 11.0 93 63-161 16-111 (226)
258 PF01861 DUF43: Protein of unk 97.1 0.013 2.8E-07 54.9 13.1 111 50-168 31-147 (243)
259 KOG1227 Putative methyltransfe 96.9 0.00034 7.3E-09 66.9 1.1 95 63-165 194-290 (351)
260 PF06962 rRNA_methylase: Putat 96.9 0.0058 1.3E-07 52.7 8.4 83 88-172 1-94 (140)
261 PF04445 SAM_MT: Putative SAM- 96.8 0.0044 9.5E-08 58.1 7.7 87 55-142 65-163 (234)
262 KOG2671 Putative RNA methylase 96.8 0.0017 3.6E-08 63.4 4.9 85 54-139 198-293 (421)
263 KOG1122 tRNA and rRNA cytosine 96.8 0.01 2.3E-07 59.5 10.6 115 59-175 237-376 (460)
264 TIGR00006 S-adenosyl-methyltra 96.8 0.0095 2.1E-07 58.2 10.1 83 53-138 10-100 (305)
265 KOG2352 Predicted spermine/spe 96.8 0.018 3.8E-07 59.0 12.2 99 65-167 50-158 (482)
266 KOG2798 Putative trehalase [Ca 96.7 0.0084 1.8E-07 57.9 9.0 117 47-167 127-293 (369)
267 COG4798 Predicted methyltransf 96.6 0.0037 8.1E-08 56.4 5.4 117 55-172 40-168 (238)
268 PF04989 CmcI: Cephalosporin h 96.6 0.013 2.9E-07 53.8 8.9 109 50-170 23-147 (206)
269 KOG3987 Uncharacterized conser 96.6 0.00092 2E-08 60.8 1.2 108 49-170 96-207 (288)
270 KOG4589 Cell division protein 96.5 0.0097 2.1E-07 53.5 7.3 94 62-167 68-181 (232)
271 KOG2793 Putative N2,N2-dimethy 96.2 0.023 5E-07 53.8 8.5 101 63-166 86-195 (248)
272 KOG2920 Predicted methyltransf 96.1 0.0068 1.5E-07 58.0 4.5 104 61-168 114-232 (282)
273 PF07091 FmrO: Ribosomal RNA m 96.0 0.044 9.5E-07 51.8 9.1 71 63-136 105-177 (251)
274 cd00315 Cyt_C5_DNA_methylase C 95.9 0.022 4.8E-07 55.1 7.3 66 66-139 2-71 (275)
275 COG1063 Tdh Threonine dehydrog 95.8 0.055 1.2E-06 54.2 9.8 94 62-169 167-268 (350)
276 COG0286 HsdM Type I restrictio 95.8 0.095 2E-06 54.9 11.7 92 49-141 172-275 (489)
277 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.034 7.3E-07 55.2 7.7 99 64-171 53-155 (380)
278 PF03141 Methyltransf_29: Puta 95.6 0.018 4E-07 59.2 5.5 99 65-171 367-468 (506)
279 KOG1596 Fibrillarin and relate 95.5 0.047 1E-06 51.0 7.2 105 58-170 151-261 (317)
280 KOG2198 tRNA cytosine-5-methyl 95.5 0.17 3.8E-06 50.2 11.6 125 59-187 151-311 (375)
281 COG3129 Predicted SAM-dependen 95.5 0.049 1.1E-06 50.7 7.1 79 63-142 78-165 (292)
282 KOG1253 tRNA methyltransferase 95.4 0.0087 1.9E-07 61.1 2.2 104 63-174 109-220 (525)
283 KOG3115 Methyltransferase-like 95.3 0.048 1.1E-06 49.7 6.6 63 63-125 60-129 (249)
284 KOG1099 SAM-dependent methyltr 95.3 0.045 9.7E-07 50.8 6.3 97 60-168 37-161 (294)
285 PF11599 AviRa: RRNA methyltra 95.1 0.35 7.7E-06 44.6 11.3 105 63-168 51-212 (246)
286 PRK09424 pntA NAD(P) transhydr 95.1 0.15 3.3E-06 53.5 10.3 41 62-103 163-206 (509)
287 PLN02668 indole-3-acetate carb 94.9 0.48 1E-05 47.9 12.9 22 149-170 216-237 (386)
288 KOG0024 Sorbitol dehydrogenase 94.4 0.088 1.9E-06 51.4 6.2 95 61-170 167-273 (354)
289 KOG1562 Spermidine synthase [A 94.3 0.2 4.4E-06 48.3 8.0 110 62-171 120-237 (337)
290 PF01795 Methyltransf_5: MraW 94.2 0.16 3.5E-06 49.8 7.5 83 53-138 10-101 (310)
291 PRK09880 L-idonate 5-dehydroge 94.2 0.25 5.4E-06 49.0 9.2 95 61-169 167-265 (343)
292 PF00145 DNA_methylase: C-5 cy 94.2 0.085 1.8E-06 51.5 5.8 92 66-167 2-108 (335)
293 COG0275 Predicted S-adenosylme 94.1 0.32 7E-06 47.2 9.1 84 52-138 12-104 (314)
294 PRK11524 putative methyltransf 93.9 0.21 4.6E-06 48.5 7.9 54 52-107 198-252 (284)
295 COG1064 AdhP Zn-dependent alco 93.7 0.4 8.8E-06 47.6 9.4 94 59-171 162-260 (339)
296 cd08283 FDH_like_1 Glutathione 93.7 0.24 5.1E-06 50.1 8.1 103 59-169 180-305 (386)
297 PF07757 AdoMet_MTase: Predict 93.6 0.16 3.5E-06 41.6 5.2 32 63-95 58-89 (112)
298 PF05711 TylF: Macrocin-O-meth 93.5 0.81 1.8E-05 43.5 10.8 123 46-173 57-215 (248)
299 TIGR00675 dcm DNA-methyltransf 93.5 0.13 2.8E-06 50.8 5.6 65 67-139 1-68 (315)
300 PF01555 N6_N4_Mtase: DNA meth 93.2 0.26 5.5E-06 45.3 6.9 51 51-103 180-231 (231)
301 TIGR00027 mthyl_TIGR00027 meth 93.1 1 2.2E-05 43.2 10.9 126 45-172 64-199 (260)
302 PRK13699 putative methylase; P 93.1 0.38 8.2E-06 45.2 7.8 54 52-107 153-207 (227)
303 COG0270 Dcm Site-specific DNA 92.1 0.37 8.1E-06 47.8 6.7 69 64-139 3-76 (328)
304 PF03269 DUF268: Caenorhabditi 92.1 0.2 4.4E-06 44.1 4.1 95 64-169 2-110 (177)
305 PRK01747 mnmC bifunctional tRN 92.0 0.44 9.4E-06 51.9 7.6 105 63-167 57-203 (662)
306 KOG2078 tRNA modification enzy 91.7 0.099 2.2E-06 52.7 2.1 62 62-125 248-311 (495)
307 PRK10458 DNA cytosine methylas 91.5 1.2 2.5E-05 46.5 9.7 72 64-139 88-178 (467)
308 PF03492 Methyltransf_7: SAM d 91.3 1.6 3.5E-05 43.5 10.1 106 63-170 16-183 (334)
309 PF02636 Methyltransf_28: Puta 91.0 0.99 2.1E-05 42.9 8.1 76 64-143 19-108 (252)
310 TIGR03451 mycoS_dep_FDH mycoth 90.8 1.5 3.3E-05 43.6 9.6 93 60-169 173-275 (358)
311 KOG2912 Predicted DNA methylas 90.8 0.61 1.3E-05 45.5 6.2 73 68-141 107-189 (419)
312 KOG3924 Putative protein methy 90.6 1.1 2.3E-05 45.1 7.9 111 53-167 182-305 (419)
313 PRK11524 putative methyltransf 90.4 0.28 6.2E-06 47.6 3.9 56 114-169 8-79 (284)
314 TIGR03366 HpnZ_proposed putati 90.2 2.5 5.4E-05 40.5 10.2 92 61-169 118-217 (280)
315 TIGR01202 bchC 2-desacetyl-2-h 90.2 1.1 2.4E-05 43.7 7.9 84 63-169 144-230 (308)
316 COG1568 Predicted methyltransf 90.2 0.58 1.2E-05 44.9 5.5 105 52-163 141-250 (354)
317 PF10237 N6-adenineMlase: Prob 90.2 3.5 7.5E-05 36.6 10.2 95 63-171 25-124 (162)
318 TIGR02356 adenyl_thiF thiazole 89.9 2.1 4.6E-05 39.3 9.0 34 62-95 19-54 (202)
319 cd08237 ribitol-5-phosphate_DH 89.7 1.6 3.4E-05 43.3 8.6 91 61-169 161-255 (341)
320 cd08281 liver_ADH_like1 Zinc-d 89.7 0.89 1.9E-05 45.5 6.9 93 59-168 187-288 (371)
321 PRK12475 thiamine/molybdopteri 89.7 1.8 3.8E-05 43.2 8.8 75 62-137 22-123 (338)
322 COG0686 Ald Alanine dehydrogen 89.6 1.3 2.9E-05 43.2 7.5 95 63-167 167-265 (371)
323 PF04072 LCM: Leucine carboxyl 89.5 0.72 1.6E-05 41.6 5.5 111 45-156 59-182 (183)
324 cd08239 THR_DH_like L-threonin 89.4 1.1 2.5E-05 43.9 7.3 93 59-168 159-260 (339)
325 PF05206 TRM13: Methyltransfer 89.0 1.4 3E-05 42.3 7.2 65 62-127 17-87 (259)
326 PRK07688 thiamine/molybdopteri 88.8 2 4.3E-05 42.9 8.5 73 63-136 23-122 (339)
327 TIGR02354 thiF_fam2 thiamine b 88.8 4.1 8.8E-05 37.4 10.0 33 63-95 20-54 (200)
328 KOG2651 rRNA adenine N-6-methy 88.8 1.4 3E-05 44.1 7.1 40 64-103 154-194 (476)
329 PRK13699 putative methylase; P 88.5 0.57 1.2E-05 44.0 4.3 54 115-168 2-70 (227)
330 PRK08644 thiamine biosynthesis 88.4 3.5 7.5E-05 38.2 9.4 73 63-136 27-123 (212)
331 PLN02740 Alcohol dehydrogenase 88.0 3.3 7.3E-05 41.6 9.7 45 59-103 194-241 (381)
332 cd05188 MDR Medium chain reduc 87.4 2.2 4.8E-05 39.7 7.6 90 62-168 133-230 (271)
333 PF10354 DUF2431: Domain of un 87.3 2.8 6E-05 37.4 7.7 101 69-171 2-126 (166)
334 PF06859 Bin3: Bicoid-interact 87.3 0.29 6.4E-06 40.3 1.3 40 130-169 1-43 (110)
335 cd08230 glucose_DH Glucose deh 87.3 2.3 4.9E-05 42.2 8.0 91 62-168 171-267 (355)
336 PF06460 NSP13: Coronavirus NS 87.2 5.4 0.00012 38.0 9.7 94 62-169 60-168 (299)
337 KOG0821 Predicted ribosomal RN 86.9 1.7 3.8E-05 40.3 6.1 73 51-126 38-111 (326)
338 COG3315 O-Methyltransferase in 86.4 3 6.4E-05 40.9 7.9 122 46-170 76-209 (297)
339 cd00757 ThiF_MoeB_HesA_family 86.0 4.9 0.00011 37.6 9.0 74 63-137 20-118 (228)
340 PRK10309 galactitol-1-phosphat 85.8 2.3 4.9E-05 42.0 7.0 94 60-169 157-259 (347)
341 KOG0022 Alcohol dehydrogenase, 85.1 2 4.2E-05 42.2 5.8 49 56-104 185-236 (375)
342 PLN02827 Alcohol dehydrogenase 85.0 8.3 0.00018 38.8 10.8 44 60-103 190-236 (378)
343 COG1565 Uncharacterized conser 85.0 3.8 8.3E-05 40.9 7.9 49 59-107 73-131 (370)
344 cd08254 hydroxyacyl_CoA_DH 6-h 84.9 6.1 0.00013 38.3 9.6 91 61-169 163-262 (338)
345 cd01492 Aos1_SUMO Ubiquitin ac 83.7 7.8 0.00017 35.4 9.0 74 63-137 20-117 (197)
346 TIGR00561 pntA NAD(P) transhyd 83.7 3.5 7.7E-05 43.4 7.5 41 62-103 162-205 (511)
347 PRK12548 shikimate 5-dehydroge 83.3 7.1 0.00015 37.9 9.1 88 51-139 113-208 (289)
348 KOG2352 Predicted spermine/spe 83.0 1.5 3.2E-05 45.3 4.3 105 63-169 295-415 (482)
349 COG1255 Uncharacterized protei 82.8 9.1 0.0002 31.9 7.9 60 64-136 14-76 (129)
350 cd01483 E1_enzyme_family Super 82.6 12 0.00027 31.8 9.4 71 66-137 1-96 (143)
351 KOG1201 Hydroxysteroid 17-beta 82.4 7.2 0.00015 38.0 8.4 74 60-138 34-122 (300)
352 cd01487 E1_ThiF_like E1_ThiF_l 82.1 9.8 0.00021 34.0 8.8 30 66-95 1-32 (174)
353 PRK05597 molybdopterin biosynt 81.9 9.9 0.00021 38.1 9.7 74 63-137 27-125 (355)
354 PRK05690 molybdopterin biosynt 81.6 11 0.00023 35.8 9.3 75 62-137 30-129 (245)
355 PRK05854 short chain dehydroge 81.6 11 0.00023 36.9 9.7 76 61-138 11-101 (313)
356 PRK06701 short chain dehydroge 81.5 20 0.00044 34.5 11.5 74 61-138 43-132 (290)
357 PRK05786 fabG 3-ketoacyl-(acyl 81.5 25 0.00054 32.2 11.8 71 63-138 4-89 (238)
358 cd00401 AdoHcyase S-adenosyl-L 81.4 11 0.00024 38.6 9.9 95 53-169 190-288 (413)
359 cd08285 NADP_ADH NADP(H)-depen 81.2 3.9 8.4E-05 40.4 6.5 92 60-168 163-264 (351)
360 cd08232 idonate-5-DH L-idonate 81.2 9.9 0.00021 37.1 9.4 90 62-168 164-260 (339)
361 cd08277 liver_alcohol_DH_like 81.1 12 0.00026 37.3 10.1 45 59-103 180-227 (365)
362 PF07279 DUF1442: Protein of u 80.9 25 0.00054 32.7 11.0 108 55-170 33-148 (218)
363 cd08278 benzyl_alcohol_DH Benz 80.6 3.9 8.4E-05 40.8 6.3 91 60-168 183-283 (365)
364 COG4301 Uncharacterized conser 80.5 37 0.00081 32.4 12.1 105 62-170 77-193 (321)
365 PRK06153 hypothetical protein; 80.1 12 0.00026 37.9 9.5 34 62-95 174-209 (393)
366 PF00107 ADH_zinc_N: Zinc-bind 80.0 8.3 0.00018 31.9 7.3 82 73-172 1-91 (130)
367 COG1062 AdhC Zn-dependent alco 79.9 4.4 9.6E-05 40.2 6.1 51 54-104 176-229 (366)
368 cd08231 MDR_TM0436_like Hypoth 79.8 13 0.00029 36.7 9.9 93 62-168 176-278 (361)
369 cd01488 Uba3_RUB Ubiquitin act 79.7 10 0.00022 37.0 8.7 70 66-136 1-94 (291)
370 TIGR02355 moeB molybdopterin s 79.2 13 0.00027 35.2 9.0 33 63-95 23-57 (240)
371 PRK08762 molybdopterin biosynt 79.1 12 0.00026 37.8 9.3 34 62-95 133-168 (376)
372 TIGR02822 adh_fam_2 zinc-bindi 79.0 16 0.00034 35.9 10.0 90 59-169 161-253 (329)
373 PF03686 UPF0146: Uncharacteri 78.4 7.2 0.00016 33.1 6.1 61 63-136 13-76 (127)
374 PF01488 Shikimate_DH: Shikima 78.1 9.9 0.00021 32.3 7.2 74 59-139 7-84 (135)
375 TIGR02819 fdhA_non_GSH formald 78.1 18 0.00038 36.8 10.3 100 60-168 182-297 (393)
376 PRK15001 SAM-dependent 23S rib 77.9 22 0.00047 36.1 10.7 93 66-169 47-141 (378)
377 PRK08328 hypothetical protein; 77.9 19 0.00041 33.8 9.6 33 63-95 26-60 (231)
378 PF02737 3HCDH_N: 3-hydroxyacy 77.9 13 0.00027 33.5 8.2 98 66-172 1-116 (180)
379 cd01484 E1-2_like Ubiquitin ac 77.8 13 0.00029 34.9 8.6 70 66-136 1-97 (234)
380 COG1748 LYS9 Saccharopine dehy 77.2 11 0.00024 38.3 8.3 71 65-141 2-79 (389)
381 PRK07411 hypothetical protein; 77.0 12 0.00026 38.1 8.6 73 63-136 37-134 (390)
382 cd05278 FDH_like Formaldehyde 76.9 5.6 0.00012 38.9 6.1 91 61-168 165-265 (347)
383 cd00755 YgdL_like Family of ac 76.8 18 0.00039 34.0 9.1 33 63-95 10-44 (231)
384 PRK07806 short chain dehydroge 76.6 39 0.00085 31.1 11.5 103 62-168 4-132 (248)
385 cd01065 NAD_bind_Shikimate_DH 76.6 22 0.00047 30.4 9.2 84 51-141 6-92 (155)
386 PF03721 UDPG_MGDP_dh_N: UDP-g 76.6 12 0.00025 34.0 7.6 100 66-170 2-120 (185)
387 cd08293 PTGR2 Prostaglandin re 75.0 4.8 0.0001 39.5 5.0 87 65-168 156-252 (345)
388 PRK08265 short chain dehydroge 75.0 40 0.00086 31.6 11.2 70 62-138 4-88 (261)
389 cd08233 butanediol_DH_like (2R 75.0 9.2 0.0002 37.7 7.1 96 59-168 168-270 (351)
390 PRK07576 short chain dehydroge 74.3 44 0.00094 31.4 11.3 73 62-138 7-94 (264)
391 PRK08223 hypothetical protein; 73.9 9.6 0.00021 37.1 6.6 73 63-136 26-123 (287)
392 PRK05600 thiamine biosynthesis 73.7 21 0.00047 36.0 9.4 34 62-95 39-74 (370)
393 PLN02586 probable cinnamyl alc 73.7 30 0.00065 34.4 10.5 89 62-168 182-276 (360)
394 PLN03154 putative allyl alcoho 73.6 32 0.00068 34.1 10.6 92 59-168 154-256 (348)
395 PRK07530 3-hydroxybutyryl-CoA 73.6 29 0.00063 33.5 10.1 99 65-172 5-121 (292)
396 PRK08589 short chain dehydroge 73.5 25 0.00053 33.3 9.4 73 62-138 4-90 (272)
397 PRK07819 3-hydroxybutyryl-CoA 73.1 12 0.00027 36.2 7.3 95 65-168 6-119 (286)
398 COG2933 Predicted SAM-dependen 73.1 7.6 0.00016 37.2 5.4 87 61-163 209-296 (358)
399 PRK06125 short chain dehydroge 73.0 25 0.00055 32.8 9.3 74 62-138 5-89 (259)
400 cd08234 threonine_DH_like L-th 73.0 37 0.00081 32.8 10.8 94 58-168 154-255 (334)
401 TIGR00518 alaDH alanine dehydr 72.7 10 0.00023 38.2 6.9 33 63-96 166-200 (370)
402 cd01489 Uba2_SUMO Ubiquitin ac 72.5 34 0.00074 33.7 10.2 71 66-137 1-97 (312)
403 PRK05808 3-hydroxybutyryl-CoA 72.5 36 0.00078 32.7 10.4 97 66-171 5-119 (282)
404 PRK06128 oxidoreductase; Provi 72.4 43 0.00093 32.2 11.0 73 62-138 53-142 (300)
405 COG0604 Qor NADPH:quinone redu 72.4 15 0.00033 36.3 7.9 97 57-169 136-240 (326)
406 PRK09260 3-hydroxybutyryl-CoA 72.1 14 0.0003 35.6 7.4 100 65-172 2-119 (288)
407 PRK12939 short chain dehydroge 72.0 52 0.0011 30.1 11.1 73 62-138 5-92 (250)
408 KOG2013 SMT3/SUMO-activating c 71.9 6.7 0.00015 40.5 5.1 73 63-136 11-109 (603)
409 cd05285 sorbitol_DH Sorbitol d 71.9 15 0.00032 36.1 7.7 94 58-168 157-263 (343)
410 cd08240 6_hydroxyhexanoate_dh_ 71.9 13 0.00028 36.5 7.3 89 63-168 175-272 (350)
411 TIGR02818 adh_III_F_hyde S-(hy 71.8 11 0.00024 37.6 6.9 45 59-103 181-228 (368)
412 cd01485 E1-1_like Ubiquitin ac 71.4 49 0.0011 30.2 10.4 33 63-95 18-52 (198)
413 PRK05708 2-dehydropantoate 2-r 71.2 21 0.00047 34.8 8.6 94 65-169 3-103 (305)
414 TIGR03201 dearomat_had 6-hydro 71.2 30 0.00064 34.1 9.7 43 60-103 163-208 (349)
415 cd05279 Zn_ADH1 Liver alcohol 71.0 16 0.00035 36.4 7.8 95 59-168 179-283 (365)
416 PRK07533 enoyl-(acyl carrier p 70.9 59 0.0013 30.4 11.3 72 62-138 8-96 (258)
417 cd08236 sugar_DH NAD(P)-depend 70.5 17 0.00036 35.6 7.7 92 60-168 156-256 (343)
418 PRK07340 ornithine cyclodeamin 70.5 28 0.00061 34.1 9.2 87 46-139 107-197 (304)
419 COG4627 Uncharacterized protei 69.8 0.77 1.7E-05 40.3 -1.7 44 128-172 45-88 (185)
420 cd08255 2-desacetyl-2-hydroxye 69.7 34 0.00073 32.1 9.4 92 60-168 94-188 (277)
421 PRK06197 short chain dehydroge 69.7 34 0.00073 33.0 9.6 76 61-138 13-103 (306)
422 PF05430 Methyltransf_30: S-ad 69.6 4.6 9.9E-05 34.2 3.0 54 114-167 32-87 (124)
423 cd08263 Zn_ADH10 Alcohol dehyd 69.5 15 0.00034 36.4 7.3 90 62-168 186-285 (367)
424 PF05050 Methyltransf_21: Meth 69.4 11 0.00023 32.5 5.4 53 69-122 1-61 (167)
425 COG0863 DNA modification methy 69.2 19 0.0004 34.6 7.6 48 60-108 219-267 (302)
426 PRK08217 fabG 3-ketoacyl-(acyl 69.1 27 0.00059 32.1 8.5 73 62-138 3-90 (253)
427 PRK08213 gluconate 5-dehydroge 69.0 28 0.00061 32.4 8.6 72 62-138 10-97 (259)
428 PRK07877 hypothetical protein; 68.9 18 0.00038 39.9 8.0 74 62-136 105-202 (722)
429 PF00106 adh_short: short chai 68.7 21 0.00046 30.5 7.3 71 65-138 1-88 (167)
430 PRK07890 short chain dehydroge 68.6 29 0.00063 32.2 8.6 73 62-138 3-90 (258)
431 cd08279 Zn_ADH_class_III Class 68.6 16 0.00034 36.4 7.1 92 60-168 179-280 (363)
432 TIGR00497 hsdM type I restrict 68.5 23 0.0005 37.2 8.6 79 63-141 217-304 (501)
433 PRK12481 2-deoxy-D-gluconate 3 68.4 30 0.00066 32.2 8.7 72 62-138 6-91 (251)
434 KOG2918 Carboxymethyl transfer 68.3 20 0.00044 35.1 7.4 51 45-95 68-120 (335)
435 PRK12937 short chain dehydroge 68.2 79 0.0017 28.9 11.4 73 62-138 3-91 (245)
436 PRK06249 2-dehydropantoate 2-r 68.1 18 0.0004 35.3 7.4 93 64-169 5-105 (313)
437 PRK06035 3-hydroxyacyl-CoA deh 67.9 38 0.00083 32.7 9.5 94 65-167 4-118 (291)
438 PRK07063 short chain dehydroge 67.9 30 0.00065 32.2 8.6 75 62-138 5-94 (260)
439 PF02254 TrkA_N: TrkA-N domain 67.8 29 0.00063 28.0 7.5 81 72-167 4-93 (116)
440 PRK12823 benD 1,6-dihydroxycyc 67.8 36 0.00077 31.7 9.1 73 62-138 6-92 (260)
441 PRK10083 putative oxidoreducta 67.7 32 0.00068 33.5 9.0 44 60-103 157-204 (339)
442 PRK08339 short chain dehydroge 67.6 30 0.00064 32.7 8.5 74 62-138 6-93 (263)
443 PRK15116 sulfur acceptor prote 67.4 42 0.00091 32.3 9.4 34 62-95 28-63 (268)
444 PRK05225 ketol-acid reductoiso 67.3 7.2 0.00016 40.4 4.3 91 62-171 34-132 (487)
445 KOG2015 NEDD8-activating compl 67.3 24 0.00053 34.8 7.6 73 64-137 40-136 (422)
446 KOG2539 Mitochondrial/chloropl 66.9 7.9 0.00017 39.9 4.5 109 60-169 197-314 (491)
447 PRK07985 oxidoreductase; Provi 66.7 40 0.00088 32.4 9.4 73 62-138 47-136 (294)
448 PRK05866 short chain dehydroge 66.7 39 0.00085 32.5 9.3 73 62-138 38-125 (293)
449 cd08265 Zn_ADH3 Alcohol dehydr 66.5 45 0.00097 33.4 10.0 96 60-168 200-305 (384)
450 PLN02702 L-idonate 5-dehydroge 66.4 62 0.0013 32.0 10.9 96 59-168 177-283 (364)
451 PRK07878 molybdopterin biosynt 66.2 29 0.00063 35.3 8.6 33 63-95 41-75 (392)
452 PLN02256 arogenate dehydrogena 65.9 44 0.00095 32.8 9.4 99 55-172 27-128 (304)
453 PF00207 A2M: Alpha-2-macroglo 65.8 44 0.00094 26.2 7.8 42 293-334 50-91 (92)
454 cd08286 FDH_like_ADH2 formalde 65.7 24 0.00052 34.5 7.7 94 61-168 164-264 (345)
455 KOG0725 Reductases with broad 65.6 47 0.001 31.9 9.5 77 61-138 5-97 (270)
456 PRK08293 3-hydroxybutyryl-CoA 65.5 49 0.0011 31.9 9.7 95 65-167 4-117 (287)
457 PRK06172 short chain dehydroge 65.3 35 0.00075 31.6 8.4 73 62-138 5-92 (253)
458 PRK07792 fabG 3-ketoacyl-(acyl 65.3 42 0.0009 32.5 9.2 74 61-138 9-97 (306)
459 PRK08303 short chain dehydroge 65.0 41 0.00089 32.7 9.1 73 62-138 6-103 (305)
460 TIGR02825 B4_12hDH leukotriene 64.9 70 0.0015 30.9 10.8 92 58-168 133-235 (325)
461 PRK06139 short chain dehydroge 64.8 39 0.00085 33.3 9.0 73 62-138 5-92 (330)
462 PRK05867 short chain dehydroge 64.5 34 0.00074 31.7 8.2 73 62-138 7-94 (253)
463 PF07991 IlvN: Acetohydroxy ac 64.4 30 0.00066 30.7 7.1 91 63-171 3-96 (165)
464 PF02558 ApbA: Ketopantoate re 64.2 28 0.00061 29.6 7.0 87 67-169 1-100 (151)
465 cd05281 TDH Threonine dehydrog 64.0 22 0.00047 34.8 7.1 93 62-168 162-260 (341)
466 COG3510 CmcI Cephalosporin hyd 63.7 20 0.00043 32.8 5.9 100 62-172 68-182 (237)
467 cd08261 Zn_ADH7 Alcohol dehydr 63.7 19 0.0004 35.1 6.5 94 60-168 156-256 (337)
468 PF01555 N6_N4_Mtase: DNA meth 63.5 8.5 0.00018 35.0 3.8 46 131-176 1-62 (231)
469 PF11899 DUF3419: Protein of u 63.4 23 0.0005 35.9 7.1 39 57-96 29-67 (380)
470 PLN02545 3-hydroxybutyryl-CoA 63.1 26 0.00057 33.8 7.3 99 65-172 5-121 (295)
471 PLN02989 cinnamyl-alcohol dehy 63.1 84 0.0018 30.4 11.0 73 63-138 4-85 (325)
472 PRK07066 3-hydroxybutyryl-CoA 63.1 46 0.00099 33.0 9.0 94 65-166 8-115 (321)
473 COG1893 ApbA Ketopantoate redu 63.0 35 0.00076 33.5 8.2 88 65-168 1-99 (307)
474 PF02086 MethyltransfD12: D12 63.0 13 0.00027 35.0 5.0 54 53-107 10-64 (260)
475 PLN02514 cinnamyl-alcohol dehy 62.9 70 0.0015 31.7 10.6 92 62-169 179-274 (357)
476 cd05284 arabinose_DH_like D-ar 62.9 26 0.00057 34.1 7.4 91 61-168 165-264 (340)
477 PRK08324 short chain dehydroge 62.7 73 0.0016 34.9 11.4 72 62-138 420-506 (681)
478 PRK06124 gluconate 5-dehydroge 62.3 42 0.00092 31.1 8.4 73 62-138 9-96 (256)
479 cd05213 NAD_bind_Glutamyl_tRNA 62.2 62 0.0013 31.7 9.8 35 62-96 176-212 (311)
480 cd08294 leukotriene_B4_DH_like 62.1 17 0.00037 35.1 5.8 91 59-168 139-239 (329)
481 PRK06200 2,3-dihydroxy-2,3-dih 61.5 44 0.00095 31.2 8.4 70 62-138 4-88 (263)
482 PRK06935 2-deoxy-D-gluconate 3 61.4 41 0.00089 31.3 8.2 73 62-138 13-99 (258)
483 PRK06522 2-dehydropantoate 2-r 61.4 61 0.0013 31.0 9.6 91 66-168 2-98 (304)
484 cd08287 FDH_like_ADH3 formalde 60.9 27 0.00059 34.0 7.1 92 60-168 165-266 (345)
485 PRK07062 short chain dehydroge 60.9 45 0.00099 31.1 8.4 75 62-138 6-95 (265)
486 PRK13403 ketol-acid reductoiso 60.8 44 0.00095 33.2 8.3 92 61-171 13-107 (335)
487 PRK07677 short chain dehydroge 60.7 43 0.00092 31.1 8.1 71 64-138 1-86 (252)
488 PRK08862 short chain dehydroge 60.5 45 0.00098 30.8 8.1 73 62-138 3-91 (227)
489 KOG1205 Predicted dehydrogenas 60.3 45 0.00097 32.4 8.1 75 62-138 10-99 (282)
490 cd08301 alcohol_DH_plants Plan 60.2 25 0.00054 34.9 6.8 45 59-103 183-230 (369)
491 cd08256 Zn_ADH2 Alcohol dehydr 60.1 28 0.00061 34.1 7.1 92 60-168 171-272 (350)
492 PRK07102 short chain dehydroge 60.1 46 0.00099 30.6 8.2 71 65-138 2-84 (243)
493 cd01491 Ube1_repeat1 Ubiquitin 59.7 1.2E+02 0.0026 29.5 11.1 73 63-137 18-112 (286)
494 PF02826 2-Hacid_dh_C: D-isome 59.5 68 0.0015 28.5 8.8 87 60-167 32-124 (178)
495 cd08300 alcohol_DH_class_III c 59.5 28 0.0006 34.7 7.0 45 59-103 182-229 (368)
496 PRK07791 short chain dehydroge 59.4 63 0.0014 30.9 9.2 73 62-138 4-100 (286)
497 COG0287 TyrA Prephenate dehydr 59.3 38 0.00083 32.8 7.6 95 65-175 4-102 (279)
498 TIGR00692 tdh L-threonine 3-de 59.2 21 0.00045 35.0 5.9 93 62-168 160-259 (340)
499 PRK12549 shikimate 5-dehydroge 59.1 87 0.0019 30.3 10.1 84 50-138 113-200 (284)
500 PRK09242 tropinone reductase; 59.1 53 0.0012 30.5 8.5 75 62-138 7-96 (257)
No 1
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=3.8e-95 Score=681.74 Aligned_cols=398 Identities=63% Similarity=0.970 Sum_probs=380.3
Q ss_pred CCCCccccCcCcccCCCCCCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHH
Q 015038 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAA 82 (414)
Q Consensus 3 ~~~~~v~~~~~~~y~~~~~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a 82 (414)
++|+.. ..++++|+.+++++++.+||++|+.+.++++|++|++|+++|.++|+++..++.++.|||+|||+|+++++++
T Consensus 118 l~n~~h-~~~kSvFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAa 196 (517)
T KOG1500|consen 118 LENVKH-LRPKSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAA 196 (517)
T ss_pred hcccee-ccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHH
Confidence 456663 5569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCC
Q 015038 83 QAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVP 162 (414)
Q Consensus 83 ~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp 162 (414)
++|+++||+||.|+|+++|++.++.|+ +.++|++|.|.++++++|+++|+|||++||+.+.+|++++.++.+. |+|||
T Consensus 197 qAGA~~vYAvEAS~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P 274 (517)
T KOG1500|consen 197 QAGAKKVYAVEASEMAQYARKLVASNN-LADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKP 274 (517)
T ss_pred HhCcceEEEEehhHHHHHHHHHHhcCC-ccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCC
Confidence 999999999999999999999999996 9999999999999999999999999999999999999999999987 99999
Q ss_pred CeEEEcccceeEEeeccchHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCccccCCceEEEEecCC
Q 015038 163 MGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242 (414)
Q Consensus 163 gG~lip~~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~~~~~~~~~df~~ 242 (414)
.|.++|+.+.+|++|+.++.+|.|..++++||.+.++||+|++++...+.++||++|+||+||+++|+++...+++||..
T Consensus 275 ~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv~h~~dF~~ 354 (517)
T KOG1500|consen 275 NGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSVFHVIDFLN 354 (517)
T ss_pred CCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccchHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeeEEEEEeecceeeeEEEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEE
Q 015038 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI 322 (414)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~ 322 (414)
++++|++++++|++|++...|.|||++||||+.|+|++..+|+||+|.+|.|||+|++|+|+.||.|++|++|+|++.+.
T Consensus 355 ~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~Li 434 (517)
T KOG1500|consen 355 MKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLI 434 (517)
T ss_pred cccchheeecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEEEEEEEeCCCCCCCCceeeeeccccCCCCceeecCCCccccccCCcccc--ccccCCccCcccCCChhh
Q 015038 323 AHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQPYVLTQDQQPHQ--LMHSQDIPIQADDLEEPE 400 (414)
Q Consensus 323 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 400 (414)
+|++++|+|.+++++++| +++|+|++|||||||||+|+|+|+..+..-+|| -+-+|++++.+++++|..
T Consensus 435 A~~~QSY~i~i~l~~~~~---------l~sSs~~lDLK~Py~R~t~~~~~pp~~~~~~~pse~~wtq~~~~~~~~~~~~l 505 (517)
T KOG1500|consen 435 ANSRQSYDITITLSAKMT---------LQSSSNKLDLKNPYFRYTGPQVYPPPGEPPQSPSEQYWTQDITQGSDNLEEML 505 (517)
T ss_pred EccccceeEEEEEEeeee---------eecccceeccCCcceeccCCCCCCCCCCCCCCcchhhcccccccCCccHHHHh
Confidence 999999999999998765 478999999999999999999999998876665 455799999998887654
Q ss_pred hHhhccccccCcC
Q 015038 401 LIQLQSQCSGAQL 413 (414)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (414)
.++.++|..+|+
T Consensus 506 -~~~~~~n~sa~i 517 (517)
T KOG1500|consen 506 -LGGLSQNGSAQI 517 (517)
T ss_pred -ccccCCCcccCC
Confidence 488899999886
No 2
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-62 Score=468.07 Aligned_cols=310 Identities=38% Similarity=0.651 Sum_probs=292.0
Q ss_pred CCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHH
Q 015038 21 EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEY 100 (414)
Q Consensus 21 ~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~ 100 (414)
+..+.+.||..|.++.+|++||+|.+|+.+|+.++.++...+++++|||||||+|+|++++|++|+++|+|||.|.+++.
T Consensus 18 d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 18 DMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADF 97 (346)
T ss_pred ccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeecc
Q 015038 101 ARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFS 179 (414)
Q Consensus 101 a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~ 179 (414)
|++.+..|+ +.+.|+++.+.++++.+| +++|+|+|+|||+++..|+++..++.+..++|+|||.++|+.+++++++++
T Consensus 98 a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~ 176 (346)
T KOG1499|consen 98 ARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIE 176 (346)
T ss_pred HHHHHHhcC-ccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEecc
Confidence 999999998 999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCcccc-CCceEEEEecCCCCcccccceeeeEEEE
Q 015038 180 DEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLV-APAVSHVIDFKKTKEENLYEIDIPLKFI 258 (414)
Q Consensus 180 ~~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~-~~~~~~~~df~~~~~~~l~~~~~~~~~~ 258 (414)
+..++. .+..||. ++|||||++++..+. ..|+++.++++.|. +|+.+.++|+.++..+++. +..+|+++
T Consensus 177 d~~~~~---~~i~fW~--~Vygfdms~~~~~~~----~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~-F~s~f~l~ 246 (346)
T KOG1499|consen 177 DDSYKD---DKIGFWD--DVYGFDMSCIKKIAI----KEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS-FTSPFKLK 246 (346)
T ss_pred Cchhhh---hhcCccc--cccccchhhhhhhhh----cccceeccChhHhcccceeeEEeeeeeeecccee-eccceEEE
Confidence 998864 3578997 999999999998774 67888899988555 5899999999999999994 99999999
Q ss_pred EeecceeeeEEEEEEEEecCCc--cceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEE
Q 015038 259 SSVGTRVHGLACWFDVLFDGST--VQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLS 336 (414)
Q Consensus 259 ~~~~g~~hg~~~wFd~~f~~~~--~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~ 336 (414)
+.+++.+|||++|||+.|.+++ .++.+||+|.+|.|||+|++++|++|+.|++|+.|.|+|.+.+|.++.|++.++++
T Consensus 247 v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~ 326 (346)
T KOG1499|consen 247 VTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLS 326 (346)
T ss_pred EccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEE
Confidence 9999999999999999999988 88999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC
Q 015038 337 VKMWG 341 (414)
Q Consensus 337 ~~~~~ 341 (414)
+...+
T Consensus 327 ~~~~~ 331 (346)
T KOG1499|consen 327 LNFKG 331 (346)
T ss_pred EecCC
Confidence 86543
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=9.6e-45 Score=368.77 Aligned_cols=270 Identities=38% Similarity=0.561 Sum_probs=212.3
Q ss_pred hhhhhhhhHHHHHHHHHhcCCC--------CCCEEEEECCCccHHHHHHHHcC-----CCeEEEEeChHHHHHH-HHHHH
Q 015038 41 MLQDYVRTGTYYAAVIENRADF--------IGRVVVDVGAGSGILSLFAAQAG-----AKHVYAVEASEMAEYA-RKLIA 106 (414)
Q Consensus 41 ml~d~~r~~~~~~ai~~~~~~~--------~~~~VLDiGcGtG~ls~~~a~~g-----~~~V~gvD~s~~~~~a-~~~~~ 106 (414)
+.+|.+++..|.+||.+.+.+. ++++|||||||+|.|+.++++++ +.+|+|||.|+++..+ ++++.
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 3468888999998887765332 35789999999999999999886 5799999999866544 56667
Q ss_pred hCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHH
Q 015038 107 GNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVE 186 (414)
Q Consensus 107 ~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e 186 (414)
.|+ ++++|+++++|++++.+++++|+||||+||+++.+|.+++ .+.++.|+|||||++||+.+++|++|++++.+|.+
T Consensus 236 ~n~-w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE-~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 236 ANG-WGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPE-CLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp HTT-TTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHH-HHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred hcC-CCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHH-HHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 786 9999999999999999999999999999999999997666 47899999999999999999999999999999887
Q ss_pred HHhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCC-ceEEEEecCCCCc--ccccceeeeEEEEEeec
Q 015038 187 IANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAP-AVSHVIDFKKTKE--ENLYEIDIPLKFISSVG 262 (414)
Q Consensus 187 ~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~-~~~~~~df~~~~~--~~l~~~~~~~~~~~~~~ 262 (414)
.... |. ...|..|+|..+.+. .|+.+ ..+++|++.+... ++...+..+++|++.++
T Consensus 314 ~~~~---~~-----------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~ 373 (448)
T PF05185_consen 314 VRNW---WN-----------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRD 373 (448)
T ss_dssp HHHH---HG-----------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSS
T ss_pred HHhh---cc-----------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCC
Confidence 5442 11 223577887776654 55556 5677766665542 34457788999999999
Q ss_pred ceeeeEEEEEEEEecCCccceeecCCCCC----CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEE
Q 015038 263 TRVHGLACWFDVLFDGSTVQRWLTTAPGA----PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVK 338 (414)
Q Consensus 263 g~~hg~~~wFd~~f~~~~~~~~lsT~P~~----~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~ 338 (414)
|.+|||++|||+.|+++ +.|||+|.. ++|||+|++|||++|+.|++|++|+++|+|+.++ ..|||||++.
T Consensus 374 g~vhGfagwFd~~Ly~~---V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~---~~vWYEW~v~ 447 (448)
T PF05185_consen 374 GVVHGFAGWFDAVLYGD---VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD---RKVWYEWSVE 447 (448)
T ss_dssp EEEEEEEEEEEEEEECS---EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS---TCEEEEEEEE
T ss_pred cEEEEEEEEEEEEeeCC---eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC---CcEEEEEEEe
Confidence 99999999999999987 679999998 7999999999999999999999999999998864 5899999874
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.3e-30 Score=258.60 Aligned_cols=267 Identities=24% Similarity=0.318 Sum_probs=212.9
Q ss_pred hhhhhHHHHHHHHHhcCCC----C---CCEEEEECCCccHHHHHHHHc---C--CCeEEEEeChHHHHHHHHHHHhCCCC
Q 015038 44 DYVRTGTYYAAVIENRADF----I---GRVVVDVGAGSGILSLFAAQA---G--AKHVYAVEASEMAEYARKLIAGNPSL 111 (414)
Q Consensus 44 d~~r~~~~~~ai~~~~~~~----~---~~~VLDiGcGtG~ls~~~a~~---g--~~~V~gvD~s~~~~~a~~~~~~n~~l 111 (414)
|.++...|.+||...+.+. + -.+|+-+|+|.|.+.....++ - .-++|+||.++.+-...++..... +
T Consensus 341 D~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-W 419 (649)
T KOG0822|consen 341 DPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-W 419 (649)
T ss_pred cchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-h
Confidence 5567777888887765433 1 236889999999987665554 1 127999999974433333333332 7
Q ss_pred CCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHhh
Q 015038 112 GERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANK 190 (414)
Q Consensus 112 ~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~~ 190 (414)
+++|+++.+|++++..| ++.|++|||++|++..+|-.++++ ..+.++|||+|+.||..++.|++|+....+|.+.+..
T Consensus 420 ~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECL-DG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~ 498 (649)
T KOG0822|consen 420 DNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECL-DGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKAT 498 (649)
T ss_pred cCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHH-HHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhc
Confidence 88999999999999987 899999999999999999887766 7888999999999999999999999999999876542
Q ss_pred hcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecceeeeEE
Q 015038 191 ALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLA 269 (414)
Q Consensus 191 ~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~~ 269 (414)
.. ...|..|+|.....- .|.+++.+++|........--+++...++|++.++|.+|||+
T Consensus 499 ~~--------------------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFa 558 (649)
T KOG0822|consen 499 ND--------------------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFA 558 (649)
T ss_pred CC--------------------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecc
Confidence 10 024788888877654 677788887776655432222456678999999999999999
Q ss_pred EEEEEEecCCccceeecCCCCC---CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEE
Q 015038 270 CWFDVLFDGSTVQRWLTTAPGA---PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVK 338 (414)
Q Consensus 270 ~wFd~~f~~~~~~~~lsT~P~~---~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~ 338 (414)
+|||..++.+. .||+.|.. .+++|++++||+++|+.|..|++|++++|++.++ ..|||||++.
T Consensus 559 GYFd~~LYkdI---~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~---~kVWYEW~v~ 624 (649)
T KOG0822|consen 559 GYFDAVLYKDI---FLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS---TKVWYEWSVE 624 (649)
T ss_pred hhhhhhhhhee---eEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC---ceeEEEEEee
Confidence 99999999764 59999975 3899999999999999999999999999999854 5999999985
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.95 E-value=2.4e-26 Score=233.60 Aligned_cols=265 Identities=22% Similarity=0.253 Sum_probs=193.8
Q ss_pred EEEEECCCccHHHHHHHHc----CCC-eEEEEeCh-HHHHHHHHHHHhCCCC-------CCcEEEEEcccccccCC----
Q 015038 66 VVVDVGAGSGILSLFAAQA----GAK-HVYAVEAS-EMAEYARKLIAGNPSL-------GERITVIKGKVEEVELP---- 128 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~----g~~-~V~gvD~s-~~~~~a~~~~~~n~~l-------~~~i~vi~~d~~~~~~~---- 128 (414)
+|+-+|+|.|.|...+.++ |.+ +|++||.| +.+...+.+...+..+ +++|++|..|++.+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999986555544 333 89999999 5444444433222124 45799999999998543
Q ss_pred --------CceeEEEEcCCccccCChhhHHHHHHHHHhccCC----Ce-------EEEcccceeEEeeccchHhHHHHHh
Q 015038 129 --------EKADILISEPMGTLLVNERMLETYVIARDRFLVP----MG-------KMFPSVGRIHMAPFSDEYLFVEIAN 189 (414)
Q Consensus 129 --------~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp----gG-------~lip~~~~~~~~~~~~~~l~~e~~~ 189 (414)
+++|+||||++|++..||-.++++ ..+.++||+ +| +.||..++.|++|+....+|.++..
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECL-DGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~ 861 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECL-EAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTE 861 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHH-HHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHH
Confidence 279999999999999999887766 667788875 55 5899999999999999999887543
Q ss_pred hhccccccccccccccccc-ccccccCCCCCeEeecCC-ccccCCceEEEEecCCCCcc----------------cccce
Q 015038 190 KALFWQQQNYYGVDLTPLY-GSAFHGYFSQPVVDAFDP-RLLVAPAVSHVIDFKKTKEE----------------NLYEI 251 (414)
Q Consensus 190 ~~~~w~~~~~~G~d~~~~~-~~~~~~~~~~p~v~~~~~-~~L~~~~~~~~~df~~~~~~----------------~l~~~ 251 (414)
.. ..|+-..+.. .......|..++|..+.. ..|..|+++++|...+.... .-+++
T Consensus 862 ~~-------~~gltvP~p~c~~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~R 934 (1072)
T PTZ00357 862 AA-------VKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLER 934 (1072)
T ss_pred hh-------hcccccCCccccccchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccce
Confidence 11 1111111100 000112356677766654 35667889998888654421 11356
Q ss_pred eeeEEEEEeecceeeeEEEEEEEEecCCcc--ceeecCCCCCC---CCCceeeEEeeC---CeeeecCCC---------E
Q 015038 252 DIPLKFISSVGTRVHGLACWFDVLFDGSTV--QRWLTTAPGAP---TTHWYQLRCVLS---QPLYVMAGQ---------E 314 (414)
Q Consensus 252 ~~~~~~~~~~~g~~hg~~~wFd~~f~~~~~--~~~lsT~P~~~---~thW~Q~~~~l~---~pl~v~~G~---------~ 314 (414)
...++|++..++++|||++||++.++++.+ .+.|||.|... +.+|++++|||+ ++..++.|+ .
T Consensus 935 ya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~ 1014 (1072)
T PTZ00357 935 AASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVA 1014 (1072)
T ss_pred eEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeecccccccccccee
Confidence 788999999999999999999999998742 46899999763 789999999999 777778887 7
Q ss_pred EEEEEEEEeCCCCceEEEEEEEEEE
Q 015038 315 ITGQLRMIAHSAQSYTIYLTLSVKM 339 (414)
Q Consensus 315 i~~~i~~~~~~~~~~~v~~~~~~~~ 339 (414)
|.+.+.++.+- ..+.|||+|++.-
T Consensus 1015 i~~~l~Rr~~~-~e~rVwYew~v~~ 1038 (1072)
T PTZ00357 1015 IRVQLDRRTSL-AEQRVWYEWSVTY 1038 (1072)
T ss_pred EEEeeeecccc-ccceEEEEEEEee
Confidence 88888888765 5679999999853
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=182.34 Aligned_cols=287 Identities=25% Similarity=0.288 Sum_probs=203.2
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCCCC-----C-EEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC
Q 015038 39 QNMLQDYVRTGTYYAAVIENRADFIG-----R-VVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL 111 (414)
Q Consensus 39 ~~ml~d~~r~~~~~~ai~~~~~~~~~-----~-~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l 111 (414)
-.||.|..|+..|+..|.......+. + .|||||+|||+|+++++++|+.+|+|+|.= +|++.|++...+|+ +
T Consensus 36 ~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng-~ 114 (636)
T KOG1501|consen 36 LDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG-M 114 (636)
T ss_pred HHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC-C
Confidence 47899999999999999887654332 2 589999999999999999999999999998 89999999999998 9
Q ss_pred CCcEEEEEcccccccCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHh
Q 015038 112 GERITVIKGKVEEVELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIAN 189 (414)
Q Consensus 112 ~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~ 189 (414)
.++|++|+....++... .+.|+++.+.+..-+..|+.+.++-++..+++++|...+|..+++|+.++++..++.-..
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~nd- 193 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLND- 193 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhc-
Confidence 99999999988887654 359999999888888889889999999999999999999999999999999988764211
Q ss_pred hhccccccccccccccccc-----ccccccCCCCCeEee--cCCccccCCceEEEEecCCCCcccccceeeeEEEEEeec
Q 015038 190 KALFWQQQNYYGVDLTPLY-----GSAFHGYFSQPVVDA--FDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVG 262 (414)
Q Consensus 190 ~~~~w~~~~~~G~d~~~~~-----~~~~~~~~~~p~v~~--~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~ 262 (414)
..--..+...|+.+.+.. +.... +..-+++. -+.+.|+++-+++.+||...-.... ++..-+.+.+..+
T Consensus 194 -l~~~~~~ts~gv~~~p~~lesc~G~~sv--~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s-~~~~~r~~va~~S 269 (636)
T KOG1501|consen 194 -LRNNEAKTSDGVRLVPPGLESCFGIKSV--QDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNS-EIEELRPPVAVHS 269 (636)
T ss_pred -cccccccccCCcccCCCccccCCCchhH--HHHHHhhcchhhheeecCcceeEEeecchhhhcch-hhhhhcCcccccc
Confidence 110111233344333221 11110 00011121 2346788999999999984222111 2222345567789
Q ss_pred ceeeeEEEEEEEEecCCccceeecCCCC-------C--CCCCceeeEEeeCCeeeecCCCEEE-E--EEEEEeCCCCceE
Q 015038 263 TRVHGLACWFDVLFDGSTVQRWLTTAPG-------A--PTTHWYQLRCVLSQPLYVMAGQEIT-G--QLRMIAHSAQSYT 330 (414)
Q Consensus 263 g~~hg~~~wFd~~f~~~~~~~~lsT~P~-------~--~~thW~Q~~~~l~~pl~v~~G~~i~-~--~i~~~~~~~~~~~ 330 (414)
|++..+..|||+.|+.... ..+.-+|. + ...||.|+..++++ ++|..+. + .+.+++.+ ..+.
T Consensus 270 g~~~~~l~wwdi~mD~~g~-~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~----~~~~~i~~~ss~~~v~~~H-~~l~ 343 (636)
T KOG1501|consen 270 GPLRSNLLWWDISMDQFGF-SFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE----KKGNRIHNVSSLMTVFSYH-LWLY 343 (636)
T ss_pred cchhheeeeeeeeeccCcc-eEEEecceecCCChHHHHHHHHHHHhcCCChh----hhcCceeeccceEEEeeee-eeeE
Confidence 9999999999999986432 22333442 2 15799998887764 3444432 1 23444555 4566
Q ss_pred EEEEEEE
Q 015038 331 IYLTLSV 337 (414)
Q Consensus 331 v~~~~~~ 337 (414)
+|.+..+
T Consensus 344 i~~~~h~ 350 (636)
T KOG1501|consen 344 IYRTDHY 350 (636)
T ss_pred Eeeeeee
Confidence 6666654
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=1.8e-16 Score=131.49 Aligned_cols=107 Identities=29% Similarity=0.377 Sum_probs=88.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-ccccCCCceeEEEEcC-
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVELPEKADILISEP- 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~~~~~fDvIis~~- 138 (414)
|+.+|||||||+|.+++.+++. +..+|+|+|+| ++++.|++++...+ ..++++++++|+ ......++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 5789999999999999999993 44579999999 59999999996665 778999999999 5555567899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+.+........+++.+.+.|+|||+++++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33434443557888999999999999998764
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=9.7e-16 Score=143.38 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
..+++++.......+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.|+++..+.+ ..+ ++++.+|+++++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LP 114 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCC
Confidence 446666666665568999999999999999999987 66689999999 59999999998765 444 999999999999
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++ ++||+|.+.. .+.+-...+..|++++|+|||||+++.-.
T Consensus 115 f~D~sFD~vt~~f---glrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 115 FPDNSFDAVTISF---GLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCccCEEEeee---hhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 88 6899999844 44444458999999999999999876544
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.60 E-value=3.9e-15 Score=140.11 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+++.+.+.....++.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|+++....+ . .+|+++++|++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~-~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-L-QNIEFVQGDAEDLPF 112 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-C-CCeeEEEcCHHHhcC
Confidence 3344555555678889999999999999998876 3 3489999999 59999999998865 3 389999999999988
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+ ++||+|++....+.+.+ +...++++.|+|||||.+++-.
T Consensus 113 ~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEee
Confidence 6 78999998654444444 7788999999999999987543
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.58 E-value=4.7e-15 Score=136.78 Aligned_cols=104 Identities=27% Similarity=0.332 Sum_probs=91.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++++|||||||-|+|+..+|+.|+ .|+|+|++ ++++.|+.....++ + .+++....++++... ++||+|+|.-+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~g-v--~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESG-V--NIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcc-c--cccchhhhHHHHHhcCCCccEEEEhhH
Confidence 6899999999999999999999997 69999999 59999999998876 3 477888888888655 79999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..++.+ ++.+++++.+++||||.++++..+
T Consensus 134 lEHv~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 134 LEHVPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHccCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 888777 677999999999999999988765
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=9e-15 Score=143.64 Aligned_cols=105 Identities=25% Similarity=0.297 Sum_probs=88.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++.|+ +|+|||++ ++++.|+++...++ ...++++++++++++..+ ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4567999999999999999998876 69999999 59999998876554 446899999999987654 68999999777
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+++.+ ...++.++.++|||||.++++..
T Consensus 208 LeHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 IEHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 777766 67899999999999999987743
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=6.7e-14 Score=134.21 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHh--CCCCCCcEEEEEcccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAG--NPSLGERITVIKGKVEEV 125 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~ 125 (414)
+++.+.+.....++.+|||+|||+|.++..+++. +. .+|+|+|+| +|++.|+++... .. ...+++++++|++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l 139 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC
Confidence 4444444455567889999999999999988875 42 489999999 599999876531 11 335799999999998
Q ss_pred cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++ ++||+|++....+++.+ +..++.++.|.|||||.+++..
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 876 58999999776666654 6888999999999999987654
No 13
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=2e-14 Score=128.96 Aligned_cols=104 Identities=29% Similarity=0.434 Sum_probs=85.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++++|||+|||+|.+++.+++.+.. +|+++|+|+ +++.|++++..|+ +.+ ++++.+|+.+...+++||+|+|||+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-cccccccccccccccceeEEEEccch
Confidence 6789999999999999999998665 799999995 8899999999997 666 99999999775556899999999986
Q ss_pred cccCC--hhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVN--ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~--e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.... ...+..++..+.++|||||.+++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 54332 23478889999999999999865
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=3.1e-14 Score=125.23 Aligned_cols=106 Identities=30% Similarity=0.387 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCccHHHHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAA-QA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a-~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis 136 (414)
.++.+|||+|||+|.++..++ +. ...+++|+|+| +|++.|+++++.++ +. +++++++|+.+++ ++++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEEE
Confidence 357899999999999999999 44 34589999999 59999999998876 55 8999999999976 4479999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..+.+++.+ ...+++.+.++|+++|.+++....
T Consensus 80 ~~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 877665544 678889999999999999876544
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=3.4e-14 Score=130.58 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=89.3
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++...++ + .+++++.+|+.++.++++||+|+
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcCCCcCEEE
Confidence 333445678999999999999999999876 79999999 58899999888765 4 45889999998877777899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+..+.+++. ...+..++..+.++|||||.+++
T Consensus 101 ~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 987766654 44578899999999999999643
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.56 E-value=1e-13 Score=130.27 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
...+++.++..+...++++|||+|||+|.++..+++. + ..+|+|+|+| .+++.|++++...+ + ++++++.+|+++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~ 107 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAME 107 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhc
Confidence 3445566667766667899999999999999999876 3 3489999999 59999999887664 4 579999999988
Q ss_pred ccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++.+ ++||+|++....+.+.+ ...++.++.++|+|||.+++.
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEE
Confidence 7655 68999998765555444 567889999999999999754
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=3.3e-14 Score=130.51 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=86.7
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++...++ + ++.+..+|+....++++||+|
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhccccCCCCEE
Confidence 3344445678999999999999999999886 699999995 8899988887765 4 377778888766666789999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++..+.+++.. .....+++.+.++|||||.+++
T Consensus 99 ~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 99 FSTVVFMFLQA-GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEecccccCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 99887766543 4577889999999999998653
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=3.9e-14 Score=113.08 Aligned_cols=93 Identities=27% Similarity=0.424 Sum_probs=77.3
Q ss_pred EEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCC
Q 015038 68 VDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVN 145 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~ 145 (414)
||+|||+|..+..+++.+..+|+|+|++ ++++.++++.... ++.++.+|+++++++ ++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeec--
Confidence 8999999999999999966689999999 5899999886543 367999999999876 789999998777776
Q ss_pred hhhHHHHHHHHHhccCCCeEEEc
Q 015038 146 ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 146 e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.....+++++.|+|||||.+++
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3478999999999999999874
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=5.9e-14 Score=134.10 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=87.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++....+ +.++++++++|+.++. .+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4567999999999999999999876 69999999 59999999988776 6678999999998864 347899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+++.+ +..++..+.++|||||.+++.
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 7776655 567889999999999999754
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.53 E-value=1.5e-13 Score=124.74 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=85.3
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
+.....++.++||+|||.|..++++|+.|. .|+|+|.|+ .++.+++.+...+ + .|+....|+.+..+++.||+|+
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-TTTEEEEE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhccccCCcCEEE
Confidence 344456788999999999999999999999 599999995 6788888777765 4 3999999999988888999999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|..+..++.. .....++..+...++|||++++
T Consensus 100 st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 100 STVVFMFLQR-ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEE
Confidence 9877777764 4578899999999999999765
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.53 E-value=1.4e-13 Score=124.88 Aligned_cols=99 Identities=21% Similarity=0.361 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.| .|++.++++++.++ +. +++++++|++++...++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~~~~~~~fD~I~s~~- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAEDFQHEEQFDVITSRA- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhhccccCCccEEEehh-
Confidence 458899999999999999988764 4589999999 59999999888875 53 5999999999875557999999975
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+ +..++..+.++|+|||.+++.
T Consensus 118 ---~~~---~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 ---LAS---LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ---hhC---HHHHHHHHHHhcCCCCEEEEE
Confidence 222 566778889999999999865
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=1.2e-13 Score=133.04 Aligned_cols=114 Identities=28% Similarity=0.356 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...+|.+|||||||.|.+++.+++. |+ +|+||.+| +..+.|++.+...+ +.+++++..+|..+++ .+
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~--~~ 127 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLP--GK 127 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG-----S
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccC--CC
Confidence 45566677788999999999999999999998 76 79999999 58999999999887 8899999999998865 49
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||.|+|-.+..++. ......++..+.++|||||++++...
T Consensus 128 fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 128 FDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp -SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999977776664 34478999999999999999987543
No 23
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.53 E-value=4.3e-14 Score=136.86 Aligned_cols=109 Identities=29% Similarity=0.364 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+. ..++++|||+|||||+|++.+++.|+++|+|+|+++ .++.|++|+..|+ +.+++.+. ...+. .
T Consensus 149 ~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 149 RLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--Eeccc-c
Confidence 4444555555 357889999999999999999999999999999996 6699999999998 88878764 22222 2
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|++|..... +..++..+.++|+|||.++++
T Consensus 223 ~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 379999999876544 456777888999999999865
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=136.27 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=89.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+...+...++++|||||||+|.++..+++.|+.+|+|+|+|+ ++..++......+ ...++.++.+++++++.+++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCCcCCc
Confidence 34445555678899999999999999999999988899999995 6655443322221 235799999999998777889
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+|..+.++..+ +..+++.+++.|+|||.++++
T Consensus 191 D~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 191 DTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 99999766666544 678899999999999999875
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=9.6e-14 Score=132.32 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=100.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
.+.+.+.+...+|++|||||||.|.+++.+|+.-..+|+|+++| ++.+.+++++++.+ +.++++++..|.+++. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~--e~ 137 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFE--EP 137 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEeccccccc--cc
Confidence 35667778888999999999999999999999843479999999 59999999999887 8899999999999875 45
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||-|+|-.|..++..+. ...++..+.++|+|||.++....
T Consensus 138 fDrIvSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 138 FDRIVSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred cceeeehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEEe
Confidence 99999988877776544 78899999999999999986543
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.52 E-value=2e-13 Score=135.84 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++....+|+|||+| .+++.|+++...++ +.++++++.+|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 5678999999999999999998633479999999 59999999888776 777899999999988765 68999999776
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.+ ...++.++.|+|||||.+++..
T Consensus 196 ~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 666655 5788899999999999998754
No 27
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.9e-14 Score=133.95 Aligned_cols=110 Identities=28% Similarity=0.305 Sum_probs=84.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..++.+.. .++++|||+|||||+|++.+++.|+++|+|+|+++ .++.|+.|++.|+ ....+..-..+..+....++
T Consensus 153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-CchhhhcccccchhhcccCc
Confidence 34444443 48899999999999999999999999999999997 5599999999997 44333333334444333369
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+||+|.+... +..+...+.+.|||||.++.+-
T Consensus 230 ~DvIVANILA~v------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 230 FDVIVANILAEV------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccEEEehhhHHH------HHHHHHHHHHHcCCCceEEEEe
Confidence 999999875433 5677888899999999998653
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.51 E-value=2e-13 Score=124.30 Aligned_cols=99 Identities=28% Similarity=0.359 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .|++.|+++++.++ +.+ ++++.+|+.++...++||+|+++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhhCCCCCCccEEEEccc-
Confidence 3789999999999999988874 45689999999 59999999999886 544 9999999998766668999999642
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. .++.+++.+.++|||||.+++..
T Consensus 122 ---~---~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ---A---SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 26788899999999999997553
No 29
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=119.59 Aligned_cols=135 Identities=30% Similarity=0.399 Sum_probs=114.3
Q ss_pred hhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcE
Q 015038 37 HQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERI 115 (414)
Q Consensus 37 ~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i 115 (414)
.|.+.|.|..|-..|..+|.+... ..+.|+|+|+|+|++.+|++ +++|+|||.++ .++.|.+++.-++ .+++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g--~~n~ 82 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPG--DVNW 82 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCC--Ccce
Confidence 467889999999999999987653 68999999999999999998 88999999996 7799999986654 3689
Q ss_pred EEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccc
Q 015038 116 TVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180 (414)
Q Consensus 116 ~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~ 180 (414)
+++.+|+.++.+ +..|+|+|+.+...+..|.... +++++..+||-++.++|....+-+.|+..
T Consensus 83 evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999988 6899999999988888777544 55677789999999999987766666644
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=2.4e-13 Score=133.08 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++...+...++++|||||||+|.++..++..|+.+|+|+|+|+ |+..++....... ...++.++.+++++++...+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCCCCc
Confidence 44555666778999999999999999999988888899999995 7765433222111 235788999999888766789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+|..+.++..+ +..++.++++.|||||.+++..
T Consensus 190 D~V~s~gvL~H~~d---p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 190 DTVFSMGVLYHRKS---PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CEEEEcchhhccCC---HHHHHHHHHHhcCCCCEEEEEE
Confidence 99999877777654 6778899999999999998764
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.50 E-value=9.7e-14 Score=130.05 Aligned_cols=106 Identities=32% Similarity=0.402 Sum_probs=89.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC---CceeEEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP---EKADILI 135 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~~fDvIi 135 (414)
....++|||+|||+|.+++++|+. ...+|+|||++ ++++.|+++++.|+ +.++|+++++|+.++... .+||+|+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCEEE
Confidence 344789999999999999999998 54689999999 59999999999997 999999999999988543 4699999
Q ss_pred EcCCccccCCh---------------hhHHHHHHHHHhccCCCeEEE
Q 015038 136 SEPMGTLLVNE---------------RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 136 s~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~li 167 (414)
|||+.+-.... ..++.+++.+.++|||||.+.
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985532221 227899999999999999985
No 32
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.48 E-value=1.9e-13 Score=114.21 Aligned_cols=105 Identities=30% Similarity=0.457 Sum_probs=85.2
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEcCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISEPM 139 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~~~ 139 (414)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..++ +.++++++.+|+.+.. . .++||+|+++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 468999999999999999999866899999995 7799999999886 7788999999998875 3 378999999998
Q ss_pred ccccCC-----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN-----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...... ......+++.+.++|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 653211 123568889999999999998754
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.48 E-value=7.7e-14 Score=129.65 Aligned_cols=102 Identities=27% Similarity=0.402 Sum_probs=83.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC----cEEEEEcccccccCCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE----RITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~----~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
|++|||+|||+|+++..+|+.|+ .|+|||++ .|++.|++....++.+.. ++++.+.++++.. ++||.|+|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 47899999999999999999997 69999999 599999998666553333 4777777887754 5699999976
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.++..+ +..++..+.++|||||.++++.-
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeeh
Confidence 6666544 78899999999999999987653
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=6.5e-13 Score=132.89 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=90.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCC--CcEEEEEcccccccCCC
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLG--ERITVIKGKVEEVELPE 129 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~--~~i~vi~~d~~~~~~~~ 129 (414)
.+++.+....+.+|||+|||+|.+++.+++.+ ..+|+++|.|+ +++.|+++++.|+ .. .+++++.+|+.+...++
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccCCCC
Confidence 35555554445699999999999999999874 45899999995 7899999998875 33 37899999986543346
Q ss_pred ceeEEEEcCCcccc--CChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLL--VNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|+|||+.+.. ........++..+.+.|+|||.+++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999999997643 233446788899999999999997663
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=3.9e-13 Score=130.68 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..++ + ++++...|+....++++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccccCCccEEEEcchh
Confidence 4566999999999999999999886 79999999 58899999988765 4 688888898877667899999998877
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+++. ......++..+.++|+|||.+++
T Consensus 195 ~~l~-~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 195 MFLN-RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 7664 34577899999999999999654
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=4.1e-13 Score=127.75 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++. +..+|+|+|+| +|++.|++++..++ ...+++++.+|+.+++.+ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDIRDIAIE-NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCChhhCCCC-CCCEEehh
Confidence 46789999999999999888772 33589999999 59999999998775 667899999999987654 59999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++.. .....+++.+.+.|||||.+++..
T Consensus 133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 77777654 336788999999999999998765
No 37
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.43 E-value=1.5e-12 Score=117.62 Aligned_cols=104 Identities=14% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++++|||+|||+|.++..+++.+. +|+++|+| .+++.+++++..++ . +++++.+|+.+.. .++||+|+++++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~-~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV-RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc-CCcccEEEECCC
Confidence 45667899999999999999999877 89999999 59999999988765 3 5899999987654 458999999987
Q ss_pred ccccCC------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.... ......+++.+.++|||||.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 654432 112567889999999999998764
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.42 E-value=4e-12 Score=106.87 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=84.5
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCCCc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELPEK 130 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~~ 130 (414)
+...+...++.+|||+|||+|.++..+++. +..+|+++|+| .+++.+++++..++ + .+++++.+|+... ..+++
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCC
Confidence 444444456789999999999999999986 44689999999 58899999888764 4 3689998987653 22368
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|++.... .....+++.+.++|||||.+++..+
T Consensus 89 ~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 89 PDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9999985421 2256889999999999999987643
No 39
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=125.17 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++..+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. +++++.+|++++...++|
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCCCCCCc
Confidence 34455555678899999999999999998872 3479999999 588888652 378899999887545789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+|+.+.+++.+ ...++.++.+.|||||.+++..
T Consensus 91 D~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 91 DVVVSNAALQWVPE---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred eEEEEehhhhhCCC---HHHHHHHHHHhCCCCcEEEEEc
Confidence 99999988887765 5778899999999999998753
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.42 E-value=2.2e-12 Score=125.42 Aligned_cols=100 Identities=29% Similarity=0.414 Sum_probs=82.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..|+ +..++.+..++.... .+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccccc-cCCCceEEEEecCH
Confidence 46789999999999999999999988999999995 8899999999887 777788887764332 24689999998643
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+..++..+.++|||||.++++
T Consensus 236 ~------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 236 E------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred H------HHHHHHHHHHHHcCCCcEEEEE
Confidence 2 2567888899999999999765
No 41
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=1.7e-12 Score=116.90 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
|...+...++...-.++||+|||.|.++..+|... .+++++|+|+ .++.|+++.... .+|+++++++.+..+++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT---SS
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCCCCC
Confidence 33334334555555789999999999999999874 5899999995 779999987653 46999999999987779
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|+..-++|++.+...+..++..+...|+|||.+++...
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999888999998877789999999999999999987543
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.41 E-value=2e-12 Score=123.08 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=83.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.+.+.+...++.+|||+|||+|.++..+++.|. +|+++|+| .|++.|+++.. .+.++.+|+++++++ ++|
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcE
Confidence 344444444568999999999999999988775 79999999 58888887632 246788999887765 589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+++...++..+ +..++.++.++|+|||.+++.
T Consensus 105 D~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 99999876665544 678899999999999999865
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=123.62 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=86.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++..+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .++.++.+|+.++..+++|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~~~~f 94 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQPPQAL 94 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCCCCCc
Confidence 3445555567889999999999999998876 34589999999 5888888763 2478999999887656799
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++...+++.+ ...++..+.+.|||||.+++..
T Consensus 95 D~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWLPD---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhCCC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 99999888777655 5678899999999999998753
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=2.1e-12 Score=122.14 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||+|||+|.++..+++. ...+|+|+|+| +|++.|++++...+ ...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVEIK-NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCCCC-CCCEEeee
Confidence 36679999999999999988875 24579999999 59999999987654 456799999999988765 68999988
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++.. .....+++.+.+.|||||.+++..
T Consensus 130 ~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 77776653 346788999999999999998764
No 45
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.40 E-value=5.7e-12 Score=116.64 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHhCCCCCCc--EEEEEc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA------KHVYAVEAS-EMAEYARKLIAGNPSLGER--ITVIKG 120 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~------~~V~gvD~s-~~~~~a~~~~~~n~~l~~~--i~vi~~ 120 (414)
+.+.....+...++.+|||++||||-++..+.+. +. ++|+.+|+| +|+..++++..+.+ +... +.++.+
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEG 166 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeC
Confidence 4455556667778899999999999999998876 33 689999999 59999999987755 5544 999999
Q ss_pred ccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 121 KVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 121 d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
|+++++++ .+||...+ ...+.+-..++..+++++|+|||||++.
T Consensus 167 dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999987 68999886 3344444458899999999999999885
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.40 E-value=2.5e-12 Score=123.51 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~ 130 (414)
..++..+...++.+|||||||+|..+..+++....+|+|+|+| .+++.|+++... .+++.++.+|+.+.+.+ ++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCC
Confidence 4455556667888999999999999988887533479999999 588999887543 25799999999877665 68
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++....+++. ......+++.+.++|||||.+++..
T Consensus 118 FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 118 FDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred eEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999964444433 2247889999999999999998754
No 47
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=5.1e-12 Score=118.35 Aligned_cols=106 Identities=27% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++.+|||+|||+|.++..+++.++.+|+++|+| .+++.+++++..++ . +++++.+|+.+....++||+|+++++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhccCCCeeEEEECCC
Confidence 35678999999999999999999877789999999 58899999988765 3 58899999877544468999999976
Q ss_pred ccccCC------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...... ...+..++..+.++|||||++++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 432111 112567788899999999999854
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=1.9e-12 Score=120.93 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=86.1
Q ss_pred CEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
++|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++...+ +.++++++.+|+.+.+.+++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 479999999999999988863 4579999999 58899999988876 78899999999976655678999998766666
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+ ...++..+.++|||||.+++..
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 644 6788999999999999998653
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=1.5e-12 Score=106.37 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=75.4
Q ss_pred EEEECCCccHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC-
Q 015038 67 VVDVGAGSGILSLFAAQAG----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM- 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~- 139 (414)
|||+|||+|..+..+++.. ..+++|+|+| +|++.++++....+ . +++++++|+.+++.. ++||+|++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999863 2689999999 59999999987754 3 799999999998643 69999999433
Q ss_pred ccccCChhhHHHHHHHHHhccCCCe
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMG 164 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG 164 (414)
.++ .....+..+++.+.++|+|||
T Consensus 78 ~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 445 566678999999999999998
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.38 E-value=4.2e-12 Score=120.99 Aligned_cols=94 Identities=34% Similarity=0.488 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..|+ +.+++.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~~-------~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGDL-------KADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCCC-------CcCEEEEcCcH
Confidence 46889999999999999999988887899999995 8899999999886 555565554432 79999997542
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+..++..+.++|||||.++++
T Consensus 190 ~------~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 N------PLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHhcCCCcEEEEE
Confidence 2 2567788899999999999875
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.37 E-value=1.2e-11 Score=112.61 Aligned_cols=108 Identities=25% Similarity=0.273 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+...+...++.+|||+|||+|.+++.+++.+ ..+|+++|+| .+++.|++++..++ + .+++++.+|... ..+++
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~~~~ 97 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-ELPGK 97 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hcCcC
Confidence 334444555578899999999999999998874 3589999999 58899999988775 4 469999998753 34578
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|++..... .+..++..+.+.|+|||.+++.
T Consensus 98 ~D~v~~~~~~~------~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 98 ADAIFIGGSGG------NLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred CCEEEECCCcc------CHHHHHHHHHHhcCCCeEEEEE
Confidence 99999864321 2566788889999999999763
No 52
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.37 E-value=7.7e-12 Score=115.00 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=87.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
......+...++.+|||+|||+|.+++.+++. + ..+|+++|++ .+++.|+++++.++ +.+++.++.+|+.+.. .
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhhhHhhc
Confidence 33345556678899999999999999998875 3 3589999999 59999999998876 5678999999997642 2
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||.|++.. . ...+..++..+.+.|||||.+++.
T Consensus 109 ~~~~D~V~~~~---~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGG---G---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECC---C---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 36899999843 1 123677889999999999999754
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.37 E-value=7e-12 Score=120.85 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis 136 (414)
..++.+|||+|||+|..++.+++. |. .+|+|+|++ .+++.|+++....+ . .+++++.+|+++++++ +.||+|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEEEE
Confidence 457889999999999988877765 44 379999999 59999999888765 4 4799999999987765 58999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+...++..+ ...+++++.++|||||.+++..
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 877766554 5678899999999999998754
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.36 E-value=1.1e-11 Score=120.40 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=84.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+...+++||+|+++|+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45799999999999999999863 3489999999 58899999999886 777899999998653323589999999873
Q ss_pred ccc------C----C------------hhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLL------V----N------------ERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l------~----~------------e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.-. . . -.....++..+.++|+|||.+++..+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 210 0 0 01246778889999999999987654
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=7.9e-12 Score=129.92 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=88.6
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Ccee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fD 132 (414)
+.+.+...++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++... ...+++++.+|+.+.+++ ++||
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCCCCCEE
Confidence 44444445678999999999999998887633479999999 588999887653 446799999999887765 5799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|+|....+++.+ ...++.++.++|||||.+++..
T Consensus 335 ~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 335 VIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999776666655 6788999999999999998764
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=2.6e-11 Score=113.78 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+...+.......++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.+++++..++ +..++.++.+|+.+...
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCC
Confidence 33444444445567899999999999999999886 3689999999 58899999887654 55679999999988765
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++....+...+ +..++..+.++|+|||.+++.
T Consensus 118 ~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEE
Confidence 4 68999998655444433 678889999999999998754
No 57
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8e-12 Score=119.57 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=90.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+++.+....+.+|||+|||.|.+++.+++.. ..+++.+|.|. .++.|++++..|+ .... .++..|+.+-. .++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecccccc-ccc
Confidence 456677766666799999999999999999984 56899999995 6699999999986 4443 77777776533 359
Q ss_pred eeEEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|||||+.|-... ....+.++..+.+.|++||.+.+...
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999884332 22245888999999999999865533
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1e-11 Score=123.33 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=87.4
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+++.+......+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|+++++.|+ +. .+++.+|+.+. .+++||
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccccc-cCCCcc
Confidence 3444443445689999999999999999874 34899999994 8899999999886 43 56777887653 357899
Q ss_pred EEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 133 ILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 133 vIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|+|+++.|.... ....+.++..+.++|||||.+++..
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 9999998775332 3456889999999999999997643
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.6e-11 Score=113.62 Aligned_cols=111 Identities=24% Similarity=0.194 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+.+.+...++.+|||+|||+|..+..+++. + ..+|+++|++ ++++.|++++..++ +.++++++.+|..+.
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccC
Confidence 334455666666667889999999999999888875 2 3489999999 58999999998876 666799999999764
Q ss_pred cC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 EL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+||+|++......+ ..++.+.|+|||++++.
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEE
Confidence 32 3689999986543322 23556889999998753
No 60
>PRK06922 hypothetical protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=128.86 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis 136 (414)
.++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++....+ .++.++.+|+.+++ + +++||+|++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 46789999999999998888775 44589999999 58999988765533 46889999998765 3 368999999
Q ss_pred cCCccccC----------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLV----------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~----------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+.+. +...+..+++++.+.|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 87665432 23457888999999999999998753
No 61
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=2e-11 Score=119.64 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=84.0
Q ss_pred CEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..++ +.++++++++|+.+...+++||+|+++|+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 689999999999999998863 4589999999 58899999999886 77789999999866433358999999986321
Q ss_pred cC----------------------ChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 143 LV----------------------NERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 143 l~----------------------~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.. +-.....++..+.++|+|||.+++..+
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 012246778899999999999987544
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=1.1e-11 Score=114.32 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-cccc--C-CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVE--L-PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~--~-~~~fDvIis 136 (414)
++.+|||+|||+|.++..+++. +..+|+|+|+| ++++.|++++..++ + .+++++++|+ +.+. + ++.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 5679999999999999998876 34579999999 59999999988775 4 5799999999 6654 3 368999998
Q ss_pred cCCccccCC-----hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVN-----ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+..+... ......+++.+.++|||||.+++..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 654322111 1114678899999999999997653
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.33 E-value=2.2e-11 Score=118.31 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 48 TGTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 48 ~~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
++.+...+..... ..++.+|||+|||+|.+++.+++... .+|+|+|+| .+++.|++++..++ +.++++++.+|+.+
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFE 176 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhc
Confidence 3444444443322 22236899999999999999998743 589999999 58899999998876 66679999999876
Q ss_pred ccCCCceeEEEEcCCccccC----------C------------hhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 125 VELPEKADILISEPMGTLLV----------N------------ERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~----------~------------e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.....+||+|+|||+..-.. . ......++..+.++|+|||.+++..+.
T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 43224899999997632110 0 113567888899999999999866543
No 64
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=4.2e-11 Score=111.19 Aligned_cols=114 Identities=23% Similarity=0.234 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.+...+.......++.+|||+|||+|.++..+++.+. .+++++|++ .+++.++++.. ...++.++.+|+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecchhcCC
Confidence 3444555555555788999999999999999998765 489999999 58888887764 2356899999998876
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+ ++||+|++....++.. .+..+++.+.++|+|||.+++..
T Consensus 102 ~~~~~~D~i~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 6899999865544433 37788999999999999998643
No 65
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.32 E-value=1.7e-11 Score=117.15 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HH---HHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MA---EYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~---~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
+.+...+...+|++|||||||+|..+..++++|++.|+|+|.+. .. ..+++.+. ...++..+...+++++..
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg----~~~~~~~lplgvE~Lp~~ 180 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG----QDPPVFELPLGVEDLPNL 180 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC----CCccEEEcCcchhhcccc
Confidence 44566667789999999999999999999999999999999984 32 22333321 123455555567777656
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.||+|+|-.+.+|..+ +-..|..++..|+|||.+++.+.
T Consensus 181 ~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred CCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEe
Confidence 79999999777777655 67778889999999999987643
No 66
>PRK08317 hypothetical protein; Provisional
Probab=99.31 E-value=3.5e-11 Score=112.64 Aligned_cols=115 Identities=25% Similarity=0.299 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+++.+.+.....++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|+++... ...+++++.+|+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEecccccCCC
Confidence 44455566666778899999999999999988763 4589999999 488888887332 34679999999987665
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+ ++||+|++....+++.+ ...+++.+.++|||||.+++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhccCC---HHHHHHHHHHHhcCCcEEEEEec
Confidence 4 68999999777666655 67788999999999999987653
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=3.2e-11 Score=112.55 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=87.6
Q ss_pred HHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRA--DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~--~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
++..+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+| +|+..|++++..++ ..+++++..+|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC-
Confidence 3344444443 45788999999999999999998866 79999999 59999999987765 5568999999998865
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++||+|++....+++. ...+..++..+.+++++++.+.+
T Consensus 118 -~~fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEE
Confidence 7899999865554443 33467788888898988776654
No 68
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.30 E-value=1.7e-11 Score=123.97 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=90.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc-----CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE-----LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~-----~~~~fDvI 134 (414)
.++++|||+|||+|.+++.++..|+.+|+++|+| .+++.|++++..|+ +. ++++++++|+.++- ..++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3678999999999999998888788899999999 58899999999987 65 58999999998752 13589999
Q ss_pred EEcCCccccCCh-------hhHHHHHHHHHhccCCCeEEEcccceeEEe
Q 015038 135 ISEPMGTLLVNE-------RMLETYVIARDRFLVPMGKMFPSVGRIHMA 176 (414)
Q Consensus 135 is~~~~~~l~~e-------~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 176 (414)
+++|+... ... .....++..+.++|+|||.++.++++-++.
T Consensus 298 ilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 298 VMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred EECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 99998532 222 124556667889999999999887765553
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.30 E-value=2.3e-11 Score=122.70 Aligned_cols=110 Identities=24% Similarity=0.238 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.+...++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++... + .+++..+|..++ +++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D~~~l--~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQDYRDL--NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECchhhc--CCCC
Confidence 3445555566888999999999999999988633479999999 599999988742 2 488888888765 4689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.+++.. ..+..++..+.++|||||.+++..
T Consensus 230 D~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999777666533 336788999999999999998753
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=4e-11 Score=111.64 Aligned_cols=108 Identities=22% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+...++.+|||||||+|.++..+++... .+|+++|++ ++++.|++++..++ + ++++++.+|..+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCc
Confidence 334555666667889999999999999999988732 369999999 59999999998876 5 579999999976532
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+||+|++...... +...+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 368999998643222 224456889999998764
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=99.29 E-value=4.1e-11 Score=108.47 Aligned_cols=107 Identities=25% Similarity=0.364 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCc-EEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGER-ITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~-i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++++|||+|||+|.++..+++.+ .+|+|+|.| .+++.+++++..++ +.++ +.++.+|+.+...+.+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccccCceEEEECCC
Confidence 567899999999999999999885 579999999 58899999988776 4433 8899998876444458999999876
Q ss_pred ccccC------------------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLV------------------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~------------------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..... ....+..+++++.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 43210 12235678899999999999887543
No 72
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=7.1e-13 Score=107.72 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=60.5
Q ss_pred EEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---cCCCceeEEEEcCCccc
Q 015038 68 VDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---ELPEKADILISEPMGTL 142 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~~~~fDvIis~~~~~~ 142 (414)
||||||+|.++..+++. ...+++|+|+| .|++.|++++.... ..+...+..+..+. ..+++||+|++..+.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG--NDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999998887 44589999999 58888888887754 23344444443333 22359999999888888
Q ss_pred cCChhhHHHHHHHHHhccCCCeEE
Q 015038 143 LVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+ ..+..+++.+.++|||||++
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 7 33789999999999999986
No 73
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.28 E-value=1.6e-11 Score=107.95 Aligned_cols=95 Identities=24% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~fDvIis~~ 138 (414)
..++++|||||||+|.++..+++.|. +|+|+|+++ +++. .+ +.....+.... ..+++||+|+|..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~------~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN------VVFDNFDAQDPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT------SEEEEEECHTHHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh------hhhhhhhhhhhhccccchhhHhhHH
Confidence 46788999999999999999999888 799999995 6655 11 22222222222 2347999999998
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+++.+ +..++..+.++|||||.+++...
T Consensus 87 ~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 87 VLEHLPD---PEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SGGGSSH---HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HHhhccc---HHHHHHHHHHhcCCCCEEEEEEc
Confidence 8888774 78999999999999999987643
No 74
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.28 E-value=3.8e-11 Score=119.03 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
...++.......++.+|||+|||+|.+++.++..|+ +|+|+|++ .|+..|+++++..+ +.+ +.++.+|+.+++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCccc
Confidence 344555555556788999999999999998888776 69999999 59999999998876 554 89999999988764
Q ss_pred CceeEEEEcCCcccc---C---ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLL---V---NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l---~---~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++++.... . .+.....++..+.+.|||||.+++.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 689999999874321 1 1233578899999999999998643
No 75
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.28 E-value=2.5e-11 Score=131.44 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=90.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc--CCCceeEEEEcC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|++++..|+ +. ++++++++|+.++- ..++||+||++|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 578999999999999999999999899999999 58899999999997 65 68999999997752 246899999998
Q ss_pred CccccC--------ChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 139 MGTLLV--------NERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 139 ~~~~l~--------~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+...-. .......++..+.++|+|||.++++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 843211 1233567788889999999999887654
No 76
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.28 E-value=4.8e-11 Score=111.85 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++..+++.+. .+++++|++ .+++.+++... .++.++.+|+.+.+.+ ++||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 4457999999999999999998753 469999999 47777776532 3688999999987644 6899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.++..+ +..++..+.++|+|||.+++.
T Consensus 107 ~l~~~~~---~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 107 ALQWCDD---LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hhhhccC---HHHHHHHHHHHcCCCcEEEEE
Confidence 7776644 678899999999999999865
No 77
>PRK05785 hypothetical protein; Provisional
Probab=99.28 E-value=3.8e-11 Score=112.70 Aligned_cols=89 Identities=20% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++.+|||||||||.++..+++....+|+|+|+| +|++.|++. ...+++|+++++++ ++||+|++....
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChh
Confidence 467999999999999999988733479999999 599988753 13467899888765 689999997665
Q ss_pred cccCChhhHHHHHHHHHhccCCCe
Q 015038 141 TLLVNERMLETYVIARDRFLVPMG 164 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG 164 (414)
+++.+ ++.+++++.|+|||.+
T Consensus 121 ~~~~d---~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 121 HASDN---IEKVIAEFTRVSRKQV 141 (226)
T ss_pred hccCC---HHHHHHHHHHHhcCce
Confidence 55444 7889999999999954
No 78
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.27 E-value=5e-11 Score=109.49 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+..++++...+. ..++.+|||+|||+|.+++.++..++.+|+++|.+ +.++.|+++++.++ + .+++++++|+.+.-
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHH
Confidence 334444444432 24678999999999999997766677899999999 58899999998876 4 37999999997642
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
..++||+|+++|+.... ..+.++..+. .+|+|+|++++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~g----~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKG----LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCCC----hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22469999999994322 2334444443 35899998887644
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.26 E-value=4.9e-11 Score=117.83 Aligned_cols=100 Identities=24% Similarity=0.229 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++... .+++++.+|+++++++ ++||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 35679999999999999888875 44689999999 588888887542 3578999999987765 6899999977
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+++.+ .+.+++++.++|||||.+++.
T Consensus 187 ~L~~~~d---~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 187 SIEYWPD---PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred hhhhCCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 6666554 467889999999999998653
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.26 E-value=7.4e-11 Score=115.74 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.....++.+|||||||+|.++..+++.. ..+++++|..++++.+++++...+ +.++++++.+|+.+...+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG-VADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCC-ccceEEEEecCccCCCCC-CC
Confidence 334444444566899999999999999999874 358999999789999999998886 788999999999865554 47
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.|.. ++.....+++++.+.|+|||++++..
T Consensus 217 D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 217 DAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998865544443 33445778999999999999998765
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=6e-11 Score=110.29 Aligned_cols=110 Identities=23% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|++++...+ . .+++++.+|....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccC
Confidence 334455666666678899999999999999988876 32 489999999 59999999998765 4 5799999998765
Q ss_pred cC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 EL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+||+|++..... .+...+.+.|||||++++.
T Consensus 140 ~~~~~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEE
Confidence 33 36899999853221 1223456789999998764
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=1.1e-10 Score=110.83 Aligned_cols=117 Identities=26% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
.+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..++ + .++.++.+|+.+...
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhccCc
Confidence 33344444432 34568999999999999999986 34589999999 58899999998875 4 369999999977433
Q ss_pred CCceeEEEEcCCccccC------Ch-----------------hhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLV------NE-----------------RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~------~e-----------------~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|+++++..... .+ .....+++.+.++|+|||.+++.
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 47899999998744211 00 11246788899999999999865
No 83
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.25 E-value=8.5e-11 Score=110.56 Aligned_cols=110 Identities=30% Similarity=0.380 Sum_probs=86.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCc
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEK 130 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~ 130 (414)
.+.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+ .+++++.+++.++. ..++
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG---LKIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC---CceEEEecCHHHhhhhcCCC
Confidence 344444456788999999999999999998876 69999999 58888888877654 25788888887764 3478
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++..+.++..+ ...++..+.++|+|||.+++..
T Consensus 115 fD~Ii~~~~l~~~~~---~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCMEMLEHVPD---PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhhHhhccCC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 999998765555544 5778899999999999998653
No 84
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.25 E-value=7e-11 Score=123.29 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..++ +.++++++.+|+.+....++||+|+||++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhCcCCCccEEEECCCC
Confidence 3468999999999999988865 455899999994 8899999998876 777899999998653334689999999873
Q ss_pred cccC--------------------Ch---hhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLLV--------------------NE---RMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l~--------------------~e---~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.... ++ .....++..+.++|+|||.+++..+
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2110 01 1245577888899999999987543
No 85
>PRK04266 fibrillarin; Provisional
Probab=99.25 E-value=1e-10 Score=109.60 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=78.3
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cCCCce
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKA 131 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~~~f 131 (414)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .++.++.+|+... .++++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhccccC
Confidence 455668889999999999999999986 33579999999 5888777666542 4589999998752 234679
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+++.. .......++..+.++|||||.+++.
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99997532 2222345678899999999999875
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=9.9e-11 Score=117.67 Aligned_cols=122 Identities=23% Similarity=0.173 Sum_probs=89.5
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 44 DYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 44 d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
....++.+.+.+...+. ++.+|||+|||+|.+++.+++. +..+|+|+|+| ++++.|++++..++ .+++++++|
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gD 308 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGS 308 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcc
Confidence 33445556666655442 4569999999999999998875 45689999999 59999999998765 379999999
Q ss_pred cccccC--CCceeEEEEcCCccccC----------------------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 122 VEEVEL--PEKADILISEPMGTLLV----------------------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 122 ~~~~~~--~~~fDvIis~~~~~~l~----------------------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+... .++||+|+|||+..... +-.....++..+.++|+|||.+++..
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876432 35799999999742110 01124577778889999999986543
No 87
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.1e-10 Score=104.11 Aligned_cols=81 Identities=35% Similarity=0.421 Sum_probs=71.1
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
....+..+++|+|+|||||.|++.++-.|+.+|+|+|++ ++++.+++|..+ +..++.++.+|+.++. .++|.++
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~--~~~dtvi 113 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR--GKFDTVI 113 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC--CccceEE
Confidence 345667889999999999999999999999999999999 588999999987 4578999999999875 6799999
Q ss_pred EcCCccc
Q 015038 136 SEPMGTL 142 (414)
Q Consensus 136 s~~~~~~ 142 (414)
.||+...
T Consensus 114 mNPPFG~ 120 (198)
T COG2263 114 MNPPFGS 120 (198)
T ss_pred ECCCCcc
Confidence 9988543
No 88
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.23 E-value=8e-11 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.131 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC----------CCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP----------SLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~----------~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+|||+|||.|..+..+|+.|. .|+|+|+|+ .++.+.+...... .-..+|+++++|+.++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3567999999999999999999998 599999996 6665433211000 0124699999999987642
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||.|+-....+++ +......++..+.++|||||.+++.
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 579999976555555 4566788999999999999986543
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.23 E-value=5.8e-11 Score=108.83 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-CceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LP-EKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~-~~fDvIis 136 (414)
...+|||||||+|.++..+++. +..+|+|+|++ .+++.|++++..++ +. +++++++|+.++. .+ +.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 4568999999999999988886 34579999999 59999998888765 54 7999999998753 33 58999998
Q ss_pred cCCccccCCh-----hhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+..+.... -....++..+.++|||||.+++..
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 8654332111 112568899999999999997643
No 90
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=1.3e-10 Score=108.40 Aligned_cols=136 Identities=25% Similarity=0.340 Sum_probs=95.9
Q ss_pred hHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLI 105 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~ 105 (414)
.|++.++.+....++ +..|...+.+.+.......++.+|||+|||+|.++..+++.+. +++++|++ .+++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 11 EWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHA 87 (224)
T ss_pred HhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 344444444333332 3333333444444332234578999999999999999988776 59999999 5889999888
Q ss_pred HhCCCCCCcEEEEEcccccccCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 106 AGNPSLGERITVIKGKVEEVELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 106 ~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++ . .++.+..+|+.++... ++||+|++....++..+ +..++..+.+.|+|||.+++..
T Consensus 88 ~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 88 KKDP-L-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPD---PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHcC-C-CceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 7654 2 2588999998876543 68999998765555544 6788899999999999987653
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=99.23 E-value=1.6e-10 Score=111.48 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCccHH-HHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGIL-SLFAA-QA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~l-s~~~a-~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis 136 (414)
..+++|+|||||.|.+ ++.++ ++ ...+++++|++ ++++.|++.+....++.++++|..+|+.+... .++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998744 44343 33 34589999999 58899999996532378899999999988643 268999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..+++. ......+++.+.+.|+|||.++...
T Consensus 202 ~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccc-cccHHHHHHHHHHhcCCCcEEEEec
Confidence 8 333332 2336888999999999999998765
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1.5e-10 Score=111.60 Aligned_cols=121 Identities=24% Similarity=0.253 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 47 RTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|++++. +. ...++.++.+|+.+
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~ 169 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFE 169 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccC
Confidence 345555555544445567899999999999999999874 4689999999 58899999887 32 45679999999865
Q ss_pred ccCCCceeEEEEcCCccccC-----------------------ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELPEKADILISEPMGTLLV-----------------------NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~-----------------------~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+++||+|+++++..... .......++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 43346899999998732110 0122466778888999999999874
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.3e-10 Score=112.51 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 47 RTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+..+...+......... +|||+|||||.+++.++.... ..|+|+|+|+ .++.|++|+..++ + .++.++.+|..+
T Consensus 95 dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~ 171 (280)
T COG2890 95 DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFE 171 (280)
T ss_pred chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeeccc
Confidence 344444544422222222 799999999999999999854 4899999995 7899999999987 6 667777777655
Q ss_pred ccCCCceeEEEEcCCcccc----------------------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 125 VELPEKADILISEPMGTLL----------------------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l----------------------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
- ..++||+|||||+.--- .+-.....++..+.++|+|||.+++..+
T Consensus 172 ~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 172 P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 3 33599999999982111 0112356788889999999999876654
No 94
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=6.1e-11 Score=110.46 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc----CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA----GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~----g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++. ++.++.+|+......++||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccccCCccEEEEC
Confidence 4679999999999999998874 234899999995 8888887642 378999999877666799999999
Q ss_pred CCccccCC---------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVN---------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~---------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+..-... -.....++..+.+++++|+.++|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 98653221 1225668888889899999887764
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=1.8e-10 Score=109.66 Aligned_cols=138 Identities=21% Similarity=0.207 Sum_probs=90.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
...+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++. .+++++++|+.++...++||+|+++++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 4568999999999999888775 34589999999 5888888752 2588999999987666789999999987
Q ss_pred cccCChhh-----------------HHHHHHHHHhccCCCeEEEcc--cceeEEeeccchHhHHHHHhhhcccccccccc
Q 015038 141 TLLVNERM-----------------LETYVIARDRFLVPMGKMFPS--VGRIHMAPFSDEYLFVEIANKALFWQQQNYYG 201 (414)
Q Consensus 141 ~~l~~e~~-----------------l~~~l~~~~r~LkpgG~lip~--~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G 201 (414)
+.+..+.. +..++.....+|+|+|.+++. ...+|-+......+ ........|- ....+|
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y-~~~l~~~g~~-~~~~~~ 214 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY-LKWSKQTGLV-TYAGCG 214 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH-HHHHHhcCcE-ecCCCC
Confidence 66433211 245666677888888866543 22333333333222 2222222222 124557
Q ss_pred cccccccc
Q 015038 202 VDLTPLYG 209 (414)
Q Consensus 202 ~d~~~~~~ 209 (414)
+|-+.+++
T Consensus 215 ~~~~~~~~ 222 (279)
T PHA03411 215 IDTSIYRD 222 (279)
T ss_pred cccceehh
Confidence 77766554
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.22 E-value=2.3e-10 Score=102.29 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
.+...+..+...++.+++|||||||.+++.++..+ ..+|||+|.+ +.++..++|..+.+ -++++++.+++.+.-.+
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchHhhcC
Confidence 44556677788899999999999999999999764 4599999999 58899999999876 47899999999886333
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.++|.|+.. -. ..++.+++.+...|||||+++.+..+
T Consensus 100 ~~~~daiFIG---Gg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 100 LPSPDAIFIG---GG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CCCCCEEEEC---CC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 279999963 22 22788889999999999999865443
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=1.8e-10 Score=109.81 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fDvIis~~ 138 (414)
+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..++ ++++++|+.+.. ..++||+|++|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 458999999999999998875 34589999999 58899999998764 478899987642 135799999999
Q ss_pred Ccccc------CC-----------------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLL------VN-----------------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l------~~-----------------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..-. .. ...+..++..+.++|+|||.+++..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74311 00 1124578888899999999997653
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.21 E-value=2.3e-10 Score=104.94 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-CC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-LP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~~ 128 (414)
..+...+...++.+|||+|||+|.++..+++. +..+|+++|+| .+++.|+++++.++ + .+++++.+|+.+. . ..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECchHHHHhhCC
Confidence 44555665567889999999999999998875 34589999999 59999999998875 4 4699999998652 1 22
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+|.++... ...+..++..+.+.|+|||.++...
T Consensus 108 ~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 108 PAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3467766532 1235778899999999999997654
No 99
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=8.6e-11 Score=122.18 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc--ccCC-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE--VELP- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~--~~~~- 128 (414)
..+.+.+...++++|||||||+|.++..+++.+ .+|+|+|++ .|++.+++.. + ...+++++++|+.. ++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~-~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---G-HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---c-cCCceEEEEecccccccCCCC
Confidence 445555555667899999999999999999875 479999999 5887765532 2 33579999999964 3334
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++||+|+++.+.+++.++ .+..++..+.++|||||.+++...
T Consensus 102 ~~fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCEEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEEEec
Confidence 689999999888877553 467889999999999999987643
No 100
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=1e-10 Score=105.11 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=81.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEE-EEEccccccc-C-CCceeEEEEcCCc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERIT-VIKGKVEEVE-L-PEKADILISEPMG 140 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~-vi~~d~~~~~-~-~~~fDvIis~~~~ 140 (414)
..||+||||||..-.+.--....+|+++|+++ |-+.|.+.++++. ..+++ ++.++.++++ + ..++|+||+....
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 36899999999887777655556899999995 8899999988873 45566 9999999987 3 4799999997655
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+...+ ....|++..|+|+|||++++-.
T Consensus 156 CSve~---~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 156 CSVED---PVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred eccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 54433 7788899999999999997654
No 101
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=3.9e-11 Score=108.61 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=91.2
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+..........+|.|+|||+|..+..+++. +...|+|+|.| +|++.|+.+. .+++|..+|+.++..+...|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcCCCCccc
Confidence 445556667789999999999999999987 55589999999 6999887753 35899999999999888999
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++++|...+++.+ ...++..+...|.|||.+-......+-
T Consensus 95 llfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 95 LLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9999999999877 456677778899999999766544433
No 102
>PRK06202 hypothetical protein; Provisional
Probab=99.19 E-value=2e-10 Score=108.14 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc----CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCcee
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA----GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKAD 132 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~----g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fD 132 (414)
...++.+|||+|||+|.++..+++. |. .+|+|+|+| .|++.|+++...+ ++++...+...+.. +++||
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD 131 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFD 131 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCcc
Confidence 3346679999999999998888753 32 379999999 5999998875433 35555555554443 36899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+|+++...+++.++ .+..+++++.+.++ ++.++
T Consensus 132 ~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 132 VVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence 99999888887654 35678899999988 44443
No 103
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=2.5e-10 Score=104.24 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C--CC-ceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L--PE-KADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~--~~-~fDvIi 135 (414)
.++++|||++||+|.+++.++.+|+++|++||.+ ..++.++++++.++ +.++++++.+|+.+. . . .. .+|+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 4688999999999999999999999999999999 58899999999886 667899999999654 1 1 12 489999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+|+...-..+..++.+ .. ..+|+++|+++....
T Consensus 127 ~DPPy~~~~~~~~l~~l-~~-~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPFFNGALQALLELC-EN-NWILEDTVLIVVEED 160 (189)
T ss_pred ECcCCCCCcHHHHHHHH-HH-CCCCCCCeEEEEEec
Confidence 98876532222222222 11 357999998876643
No 104
>PRK04457 spermidine synthase; Provisional
Probab=99.18 E-value=1.8e-10 Score=110.43 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=86.7
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 51 YYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 51 ~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
|.+++...+. ..++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+ ..++++++.+|..++-
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIA 131 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHH
Confidence 4444543322 235679999999999999988876 45589999999 58899999876543 4578999999987652
Q ss_pred -CCCceeEEEEcCCccc-cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTL-LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~-l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++||+|+++..... ....-....++..+.+.|+|||++++.
T Consensus 132 ~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 132 VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3468999998754322 111112368889999999999999875
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.17 E-value=4.4e-10 Score=104.35 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
......+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|++++...+ +. +++++.+|..+...
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~ 140 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLG-LH-NVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCC-CC-ceEEEECCcccCCC
Confidence 33445556666667788999999999999998888754 79999999 58899999998775 43 59999999865422
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|++..... .+...+.+.|+|||.+++.
T Consensus 141 ~~~~fD~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 141 AYAPFDRILVTAAAP---------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCcCEEEEccCch---------hhhHHHHHhcCCCcEEEEE
Confidence 26899999864322 2234556899999998754
No 106
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=116.19 Aligned_cols=116 Identities=28% Similarity=0.271 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIi 135 (414)
.+|++|||+.|-||.+++.+|..||++|++||+| ..++.|++|++-|+.-.+++.++++|+.++- ..++||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3599999999999999999999999999999999 5889999999999833577999999998762 124899999
Q ss_pred EcCCccccC------ChhhHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 136 SEPMGTLLV------NERMLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 136 s~~~~~~l~------~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
.+|+...-. -......++..+.++|+|||+++.++++-++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 999854221 123456778888999999999999888755543
No 107
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.17 E-value=2.2e-10 Score=108.05 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-----CCce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-----PEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-----~~~f 131 (414)
.++++|||+|||+|..++.+++. +..+|+++|++ ++++.|+++++.++ +.++|+++.+|+.+.- + .++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 46789999999999988777765 35689999999 58899999999997 8889999999997751 1 3589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+|+.+.. ......++..+.++|+|||+++++..
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998532 23356777888899999999987653
No 108
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.16 E-value=5.6e-10 Score=104.52 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+ ..+++.+..+|+... .+.||+|++....
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 4678999999999999999999876 59999999 59999999887765 556899999995432 4689999986655
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+++.. ..+..+++.+.+.+++++++
T Consensus 138 ~~~~~-~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 138 IHYPQ-EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hcCCH-HHHHHHHHHHHhhcCCeEEE
Confidence 45443 34677778888776554444
No 109
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=9e-11 Score=112.71 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCCEEEEECCCccH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHh----CC------------------
Q 015038 63 IGRVVVDVGAGSGI----LSLFAAQAG------AKHVYAVEAS-EMAEYARKLIAG----NP------------------ 109 (414)
Q Consensus 63 ~~~~VLDiGcGtG~----ls~~~a~~g------~~~V~gvD~s-~~~~~a~~~~~~----n~------------------ 109 (414)
++.+|||+|||+|. +++.+++.+ ..+|+|+|+| .|++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 566666642 2379999999 599999875310 00
Q ss_pred ---CCCCcEEEEEcccccccC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 110 ---SLGERITVIKGKVEEVEL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 110 ---~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+..+|++..+|+.+..+ .++||+|+|..+.+++.. .....++..+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 012468999999998765 478999999776666643 4467889999999999999987543
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=4.7e-10 Score=115.06 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=88.2
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCcee
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKAD 132 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fD 132 (414)
.+...++.+|||+|||+|..+..+++.+. .+|+|+|++ .++..++++++.++ + +++++.+|+.+... +++||
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCCCC
Confidence 44556788999999999999999998743 589999999 59999999998876 4 37899999987531 36799
Q ss_pred EEEEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 133 ILISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 133 vIis~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
.|+++++.+.. ..+.. ...++..+.++|||||.++.+.++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99998874321 11111 24678889999999999998877644
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.14 E-value=4.5e-10 Score=107.92 Aligned_cols=113 Identities=14% Similarity=-0.014 Sum_probs=87.1
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEE
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADIL 134 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvI 134 (414)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.++ + .+++++.+|...+... ++||.|
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence 34467889999999999999988875 2 3489999999 59999999999876 4 4699999998876432 579999
Q ss_pred EEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEccccee
Q 015038 135 ISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 135 is~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
+++++-+.. ..+.. ...++..+.++|||||+++.+.+++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 998774422 11111 2358888999999999998777763
No 112
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=4.1e-10 Score=100.83 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=80.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC-ce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE-KA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~-~f 131 (414)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.+++++.. ..+++++++|+.++..++ .+
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCC
Confidence 34455555677899999999999999999984 579999999 488998888753 247999999999987664 59
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|.|+++++.+. ....+..++.. ..+.++|.+++..
T Consensus 79 d~vi~n~Py~~--~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYNI--STPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCccc--HHHHHHHHHhc--CCCcceEEEEEEH
Confidence 99999987653 23334545432 2345788877654
No 113
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.3e-10 Score=104.26 Aligned_cols=107 Identities=26% Similarity=0.306 Sum_probs=92.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..|.......++++|||.|.|+|.++..+|++ | ..+|+..|+. +.++.|++|++..+ +.+++++..+|+.+...++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc
Confidence 44667778889999999999999999999986 3 4699999998 69999999999986 8888999999999988778
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.||.|+.+.+. +..++..+.+.|||||.+++
T Consensus 163 ~vDav~LDmp~--------PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 163 DVDAVFLDLPD--------PWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccCEEEEcCCC--------hHHHHHHHHHHhCCCcEEEE
Confidence 99999975432 56788889999999999864
No 114
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=5.6e-10 Score=115.06 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=88.9
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+| .+++.+++++...+ + .+|+++.+|+.++..+++||+|
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCcccccccCCCCCEE
Confidence 344567889999999999999888874 23489999999 59999999998876 5 4699999999887655689999
Q ss_pred EEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++++-+.. ..+.. ...++..+.++|||||+++.+.+++.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 987663221 11111 23578999999999999998877743
No 115
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.14 E-value=4.7e-10 Score=110.08 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCC---CCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNP---SLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~---~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++..... ....++.+..+|++++ +++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3678999999999999999999876 79999999 59999999876531 0124688888998764 4789999997
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.+++..+. ...++..+.+ +.++|.++
T Consensus 220 ~vL~H~p~~~-~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDK-ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHH-HHHHHHHHHh-hcCCEEEE
Confidence 6655554433 4456666654 46666654
No 116
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.13 E-value=5.9e-10 Score=107.52 Aligned_cols=113 Identities=27% Similarity=0.305 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~----~~~~fDvIi 135 (414)
.++++|||+.|-||.+++.++..|+++|++||.| ..++.|++++..|+ +. ++++++.+|+.++- ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3689999999999999999999999999999999 58899999999998 65 78999999997741 236899999
Q ss_pred EcCCccccC---ChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 136 SEPMGTLLV---NERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 136 s~~~~~~l~---~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++|+...-. -+.....++..+.++|+|||.++.++++.++
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 999844211 1344667888889999999999888776444
No 117
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.13 E-value=5.5e-10 Score=104.23 Aligned_cols=104 Identities=22% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC----------CCCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN----------PSLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n----------~~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ .++.+.+..... .....+|++.++|+.++...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3567999999999999999999998 599999996 556543211000 00135799999999988543
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..||.|+-....+++ +......++..+.++|+|||.++
T Consensus 115 ~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 115 ADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 579999976655555 45667889999999999999744
No 118
>PRK00811 spermidine synthase; Provisional
Probab=99.13 E-value=4.4e-10 Score=109.04 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCC-CC--CCcEEEEEccccccc--CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNP-SL--GERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~-~l--~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
.++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ +. ..+++++.+|...+- ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999887 67799999999 58899999876421 11 468999999998753 24689999
Q ss_pred EEcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++.......... .-..+++.+.+.|+|||+++......+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 9986543322221 136778889999999999987655433
No 119
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=5.3e-10 Score=115.28 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=89.0
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCce
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKA 131 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~f 131 (414)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++..++ +. +++++++|+.++. ++++|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 244 PALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccC
Confidence 3444567789999999999999998886 34589999999 58899999998876 54 4999999998763 33689
Q ss_pred eEEEEcCCccccC------------Chhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 132 DILISEPMGTLLV------------NERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 132 DvIis~~~~~~l~------------~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|+|+++++.+... .+.. ...++..+.++|||||.++.+.++++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9999987733210 1111 24578889999999999987766644
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.12 E-value=6e-10 Score=102.97 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++. +..+++|+|+| ++++.|+++.. ++.++.+|+.+...+++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFDPFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccCCCCCCCEEEEEECCh
Confidence 35678999999999999998886 45689999999 58898887532 36788888887323468999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+++. ...+..+++++.|.++ +.+++
T Consensus 115 L~hl~-p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 115 LIHIN-PDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred hhhCC-HHHHHHHHHHHHhhcC--cEEEE
Confidence 77764 4557888888988873 45544
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8.9e-10 Score=100.60 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-C
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-P 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~ 128 (414)
....+.+.+...++.+|||||||+|..+..+|+... +|+++|.. +.++.|++++...+ +. +|.++++|...--. .
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg-~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLG-YE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcC-CC-ceEEEECCcccCCCCC
Confidence 445677788888999999999999999999999854 89999998 58899999999876 54 49999999876433 3
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..||.|+...-...+ ++.+ .+.||+||++++-.+
T Consensus 137 aPyD~I~Vtaaa~~v-----P~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV-----PEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC-----CHHH----HHhcccCCEEEEEEc
Confidence 789999975332222 3444 467999999975433
No 122
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.11 E-value=3.6e-10 Score=99.71 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=82.7
Q ss_pred EEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCC---
Q 015038 66 VVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPM--- 139 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~--- 139 (414)
+|||+|||.|.+...+++.|.. +++|+|.|+ .++.|+..++.++ +++.|++.+.|+.+.. .+++||+|+--..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 9999999999999999998765 499999995 7788888888886 8888999999998853 3478888874221
Q ss_pred --ccccCChhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 140 --GTLLVNERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 140 --~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.+.......+..++..+.++|+|||++++.+|+.
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1111112224566788899999999999888763
No 123
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.11 E-value=7.4e-10 Score=109.17 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCce
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKA 131 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~f 131 (414)
+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| .+++.|+++++.++ + .+++++.+|+.++.. .++|
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~ 241 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVP 241 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCC
Confidence 3333333467899999999999999999987 479999999 59999999999887 5 579999999987642 2579
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
|+|+++|+-..+. ..++..+ ..++|+++++.+...
T Consensus 242 D~Vv~dPPr~G~~-----~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 242 DLVLVNPPRRGIG-----KELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred eEEEECCCCCCcc-----HHHHHHH-HHcCCCeEEEEECCc
Confidence 9999999854332 2233333 336788888766554
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=7.6e-10 Score=113.48 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=89.0
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCcee
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fD 132 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..+ +. +++++.+|+.++. .+++||
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhhhhhhhhccCC
Confidence 344567889999999999999988876 24589999999 59999999998876 53 5899999998764 346899
Q ss_pred EEEEcCCccccCC----h---------------hhHHHHHHHHHhccCCCeEEEccccee
Q 015038 133 ILISEPMGTLLVN----E---------------RMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 133 vIis~~~~~~l~~----e---------------~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.|+++++.+.... . .....++..+.++|||||.++.+.|++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999877432211 1 012466888899999999999888873
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.11 E-value=9.8e-10 Score=107.58 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCce---e--E
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKA---D--I 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~f---D--v 133 (414)
++.+|||+|||+|..+..++++. ..+|+|+|+| +|++.|++++.... ...++..+++|+.+. ..+..+ + +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56799999999999999998874 3479999999 59999988876532 234678899999873 343333 2 3
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++....+.+ .......+++.+.+.|+|||.+++....
T Consensus 142 ~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 142 FFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3333333333 3455778999999999999999876543
No 126
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=8.4e-10 Score=87.94 Aligned_cols=100 Identities=33% Similarity=0.455 Sum_probs=79.3
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcCCccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEPMGTL 142 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~ 142 (414)
+|+|+|||+|.++..+++.+..+++++|.++ ....+++....+ ...++.++.+|+.+... ..++|+|+++.+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999998886667899999995 667776543332 34679999999988763 478999999877655
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ......+++.+.+.|+|||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 445788889999999999999865
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=7.1e-10 Score=113.97 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=89.2
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----C-CC
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----L-PE 129 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~-~~ 129 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++..++ +. +|+++++|+.++. . .+
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhcccccccccc
Confidence 344567889999999999999998876 23589999999 59999999999876 54 5999999998764 1 36
Q ss_pred ceeEEEEcCCccccC----Ch--------hh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 130 KADILISEPMGTLLV----NE--------RM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 130 ~fDvIis~~~~~~l~----~e--------~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+||.|+++++.+... ++ .. ...++..+.++|||||+++.+.++++
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 899999987633211 11 11 35778899999999999988877744
No 128
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=1.1e-09 Score=109.60 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCc
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEK 130 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~ 130 (414)
........+..+||||||+|.++..+|+. +...++|+|++ ++++.|.+++..++ + .++.++++|+..+. + +++
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCc
Confidence 33444455679999999999999999987 34579999999 69999988888775 5 46999999997642 2 378
Q ss_pred eeEEEEcCCccccCChh---hHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNER---MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~---~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|.|+++.+..+..... ....++..+.|+|+|||.+.+.+
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999876543321111 12678899999999999987654
No 129
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=1.5e-09 Score=97.51 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-
Q 015038 50 TYYAAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV- 125 (414)
Q Consensus 50 ~~~~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~- 125 (414)
..++++...+.. ..+.+|||+.+|||.+++.++.+|+.+++.||.+ ..+...++|++.-+ +..+..++..|....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHH
Confidence 344555555543 7899999999999999999999999999999999 57789999988765 668899999999854
Q ss_pred -cCCC--ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 126 -ELPE--KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 126 -~~~~--~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.... .||+|+.+|+...-..+.......-.-..+|+|+|.+++....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2333 4999999999773222111222222246889999999877554
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.09 E-value=9.9e-10 Score=112.66 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=88.0
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCc
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEK 130 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~ 130 (414)
...+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..+ +..++.+..+|...... .++
T Consensus 231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccc
Confidence 33445567899999999999999999885 44589999999 59999999999876 55445557777765432 367
Q ss_pred eeEEEEcCCccc--cC--Ch--------h-------hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 131 ADILISEPMGTL--LV--NE--------R-------MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 131 fDvIis~~~~~~--l~--~e--------~-------~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
||.|+++++.+. .. .+ . ....++..+.++|||||.++.+.+++.
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999998866332 11 11 1 125688889999999999998887743
No 131
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.09 E-value=3.3e-10 Score=102.75 Aligned_cols=115 Identities=28% Similarity=0.260 Sum_probs=81.4
Q ss_pred HHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---
Q 015038 53 AAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--- 126 (414)
Q Consensus 53 ~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--- 126 (414)
+++...+.. .++.+|||+.||||.+++.++.+|+++|+.||.+ ..+...+++++.-+ ..+++.++.+|+...-
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhh
Confidence 444444332 5889999999999999999999999999999999 57789999998765 6678999999975532
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
...+||+|+.+|+...... ...++..+. .+|+++|.++....
T Consensus 109 ~~~~~~fDiIflDPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHCTS-EEEEEE--STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cccCCCceEEEECCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 2478999999998654321 244444444 89999999987643
No 132
>PLN02476 O-methyltransferase
Probab=99.07 E-value=2.7e-09 Score=102.45 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-----CCc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-----PEK 130 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-----~~~ 130 (414)
..+.++|||||+|+|..++.+|+. + ..+|+++|.+ +.++.|++++++.+ +.++|+++.+|+.+.- + .++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 356789999999999999999985 2 3479999999 58899999999997 8899999999987641 1 257
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+.+.. ......+++.+.++|+|||+++.+..
T Consensus 195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999997643 34467777888899999999987644
No 133
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=111.59 Aligned_cols=114 Identities=24% Similarity=0.202 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| ++++.|++++..++ + .+++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhh
Confidence 3444555555555677899999999999999999876 589999999 59999999998876 5 46999999997642
Q ss_pred ---C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 ---L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ---~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. .++||+|+++++-..+ ..++..+.+ ++|+++++++...
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence 2 2579999999986542 233344444 6899988877543
No 134
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=1.4e-09 Score=100.87 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C-CC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L-PE 129 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~-~~ 129 (414)
..++.+|||||||+|.++..+++.. ..+|+|||+++|. + . .+++++++|+++.. . .+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~-~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------P-I-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------C-C-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 3567899999999999999888863 2489999999841 1 2 24899999998853 2 36
Q ss_pred ceeEEEEcCCccccCChh--------hHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNER--------MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~--------~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|+...++..... ..+.++..+.++|||||.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999986443322211 1356789999999999999763
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=1.8e-09 Score=101.07 Aligned_cols=125 Identities=27% Similarity=0.274 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 46 VRTGTYYAAVIENRA---DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~---~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
..++.+..++.+.+. ..++..+||+|||+|..++.++.. +..+|+|||.|+ .+..|.+|+..+. +.+++.+++-
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~ 206 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHN 206 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEec
Confidence 345667777766543 345568999999999999988875 667899999996 6799999999887 8899999977
Q ss_pred ccccc---c---CCCceeEEEEcCCcccc-----------------------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 121 KVEEV---E---LPEKADILISEPMGTLL-----------------------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 121 d~~~~---~---~~~~fDvIis~~~~~~l-----------------------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+++.- + +.++.|+++||++.-.- .+-..+..++.-+.|.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 66542 1 22789999999982211 1112244667778899999999987654
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=2.7e-09 Score=105.03 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+...+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.++ . +++.++.+|..+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhccc
Confidence 344455555566788999999999999999988632 369999999 59999999998876 4 579999999876533
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++... ...+...+.+.|+|||.++..
T Consensus 146 ~~~~fD~Ii~~~g---------~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 146 EFAPYDVIFVTVG---------VDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccCCccEEEECCc---------hHHhHHHHHHhcCCCCEEEEE
Confidence 2 57999998421 112223456789999998653
No 137
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.03 E-value=3.6e-09 Score=106.70 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
.++.+|||+|||+|.+++.++..+ .+|+|+|++ ++++.|+++++.++ + ++++++.+|+.++.. ..+||+|+.+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 456799999999999999999876 579999999 58899999999886 5 479999999987532 24699999999
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+-..+ . ..++..+. .++|+++++.+..
T Consensus 309 Pr~G~-~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 309 PRRGI-G----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC-c----HHHHHHHH-hcCCCeEEEEEeC
Confidence 96432 2 34444443 3789998876643
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.02 E-value=1.1e-09 Score=105.78 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis 136 (414)
++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|+++. .++.++.+|+.+++++ ++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45789999999999998887652 2369999999 5888887642 2478999999887765 68999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
... . ..+.++.|+|||||.++..
T Consensus 158 ~~~------~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 158 IYA------P----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred ecC------C----CCHHHHHhhccCCCEEEEE
Confidence 421 1 1235678999999999753
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.01 E-value=3e-09 Score=98.50 Aligned_cols=109 Identities=25% Similarity=0.278 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+++.+...++.+|||||||+|.++..+++. |.. +|++||.++ +++.|++++...+ . .+|.++.+|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-~-~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-I-DNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-T-HSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-c-CceeEEEcchhhc
Confidence 445567778888889999999999999999999987 433 699999995 8899999998865 3 4799999998764
Q ss_pred c-CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 126 E-LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 126 ~-~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
. ...+||.|++..... ..+.. +.+.|++||+++.
T Consensus 136 ~~~~apfD~I~v~~a~~-----~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVP-----EIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp TGGG-SEEEEEESSBBS-----S--HH----HHHTEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccc-----hHHHH----HHHhcCCCcEEEE
Confidence 3 236899999854221 22333 3467999999964
No 140
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.00 E-value=2.2e-09 Score=97.84 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C-C
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L-P 128 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~-~ 128 (414)
...++.+|||+|||+|.++..+++. +..+|+|+|+|++. . . .+++++.+|+.+.. . .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---~-~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---I-ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---C-CCceEEEeeCCChhHHHHHHHHhCC
Confidence 3457889999999999999888876 34579999999743 1 1 24788888887642 2 3
Q ss_pred CceeEEEEcCCcc----ccCC----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGT----LLVN----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~----~l~~----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++...+ ...+ ....+.++..+.+.|+|||.+++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 5799999975321 1111 122467889999999999999864
No 141
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.99 E-value=4.9e-09 Score=96.73 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
..+...+.+. .+.++|||||||+|.-++.+|++ + ..+|+.+|.+ +.++.|+++++..+ +.++|+++.+|+.++
T Consensus 34 g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 34 GQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHH
T ss_pred HHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhh
Confidence 4454555444 36789999999999999999986 2 3489999999 58999999999987 889999999999874
Q ss_pred cC-------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 126 EL-------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 126 ~~-------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
-. .++||+|+.+. +......++..+.++|+|||+++.+..-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 11 24799999754 2344566777888999999999877544
No 142
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=4.9e-09 Score=100.96 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=78.3
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..+.++|+.- +...++.+|||+|||+|.++..+++. + ..+|||||+++ +.+...+.+... .+|.++.+|+
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 3344555432 34567889999999999999999987 3 35899999994 554443333221 3588999998
Q ss_pred cccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 123 EEVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 123 ~~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.... +.+.||+|+++.. . ......++.++.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 6521 2357999999763 1 223456667788999999999874
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.97 E-value=3.9e-09 Score=117.26 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC-------------
Q 015038 46 VRTGTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP------------- 109 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~------------- 109 (414)
..+..+.+.+..... .+++.+|||+|||+|.+++.+++.. ..+|+|+|+|+ +++.|++|+..|+
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~ 179 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG 179 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence 344555555322111 1246799999999999999999863 46899999995 8899999998764
Q ss_pred -CCCCcEEEEEcccccccCC--CceeEEEEcCCccc------c-----------------------------CChhhHHH
Q 015038 110 -SLGERITVIKGKVEEVELP--EKADILISEPMGTL------L-----------------------------VNERMLET 151 (414)
Q Consensus 110 -~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~------l-----------------------------~~e~~l~~ 151 (414)
.+.++++++++|+.+.... .+||+||||++.-. + .+-.....
T Consensus 180 ~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~ 259 (1082)
T PLN02672 180 KTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 259 (1082)
T ss_pred ccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHH
Confidence 1235799999999875422 36999999988210 0 00011356
Q ss_pred HHHHHHhccCCCeEEEcccce
Q 015038 152 YVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 152 ~l~~~~r~LkpgG~lip~~~~ 172 (414)
++..+.++|+|||.+++..+.
T Consensus 260 i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 260 AVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred HHHHHHHhccCCCEEEEEECc
Confidence 778888999999999887654
No 144
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.97 E-value=5.5e-09 Score=94.03 Aligned_cols=106 Identities=29% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCC-CCCCcEEEEEccccccc-----CCCcee
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNP-SLGERITVIKGKVEEVE-----LPEKAD 132 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~-----~~~~fD 132 (414)
...++++|||+|||+|..++.+++. +..+|+..|.++.++.++.+++.|+ ....++.+...|..+-. .+.+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4568899999999999999999999 7779999999997789999998874 13467788777664411 135899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|++. ..+.++...+.++..+.++|+++|.+++
T Consensus 122 ~Ilas---Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILAS---DVLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEEE---S--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEEe---cccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99973 3444577789999999999999998544
No 145
>PLN02366 spermidine synthase
Probab=98.97 E-value=1e-08 Score=100.39 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=86.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC-CC-CCcEEEEEccccccc--C-CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP-SL-GERITVIKGKVEEVE--L-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~-~l-~~~i~vi~~d~~~~~--~-~~~fDvI 134 (414)
.++++||+||||.|.++..+++.. ..+|+.||+++ +++.|++.+...+ .+ ..+++++.+|...+- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999884 57899999995 8899999875421 12 358999999986652 2 3689999
Q ss_pred EEcCCccccCCh-hhHHHHHHHHHhccCCCeEEEcccceeEEe
Q 015038 135 ISEPMGTLLVNE-RMLETYVIARDRFLVPMGKMFPSVGRIHMA 176 (414)
Q Consensus 135 is~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 176 (414)
+++......... -.-..+++.+.+.|+|||+++....+.+..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 997654332211 113567889999999999998776655543
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=98.96 E-value=7e-09 Score=102.49 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHH--H---hCCCCCCcEEEEEccccccc--CCCcee
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLI--A---GNPSLGERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~--~---~n~~l~~~i~vi~~d~~~~~--~~~~fD 132 (414)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. . ....-..+++++.+|+.++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888874 57899999994 889998621 1 11112468999999998852 236899
Q ss_pred EEEEcCCcccc--CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 133 ILISEPMGTLL--VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 133 vIis~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+|+++...... .....-..+++.+++.|+|||+++....+
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99998653221 11111256888999999999999776543
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.95 E-value=1.1e-08 Score=98.66 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCC-CC-CCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNP-SL-GERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~-~l-~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
..+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ .+ ..+++++.+|..++- .+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999998888875 6789999999 48899998775421 11 357899998886642 246899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++.......... ....+++.+.+.|+|||+++....+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 976533222211 1357778899999999999887544
No 148
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.94 E-value=6.2e-09 Score=102.80 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh--------CCC
Q 015038 40 NMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG--------NPS 110 (414)
Q Consensus 40 ~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~--------n~~ 110 (414)
+-++.++.+..+...+.......++.+|||+|||-|.-..-+.+++..+++|+|++ ..++.|+++... ...
T Consensus 39 R~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 34455555444433333333333678999999999988888888899999999999 577888888721 000
Q ss_pred CCCcEEEEEccccccc-----CC--CceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 111 LGERITVIKGKVEEVE-----LP--EKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 111 l~~~i~vi~~d~~~~~-----~~--~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..-...++.+|..... .+ .+||+|-|-...| .+..+.....++..+.+.|+|||++|-+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1234677888876432 12 4899999976544 5567888899999999999999999754
No 149
>PRK03612 spermidine synthase; Provisional
Probab=98.93 E-value=1e-08 Score=107.62 Aligned_cols=113 Identities=22% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHH--HHh-C-CCC-CCcEEEEEccccccc--CCCcee
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKL--IAG-N-PSL-GERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~--~~~-n-~~l-~~~i~vi~~d~~~~~--~~~~fD 132 (414)
.++++|||||||+|..+..+++.+. ++|+++|++ ++++.|+++ +.. + +.+ +++++++.+|..++- .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999998854 799999999 588999983 221 1 012 358999999998752 347899
Q ss_pred EEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 133 ILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 133 vIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+|++++....... ...-+.+++.+.+.|||||+++.+..+.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~ 419 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY 419 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 9999876433211 11124677888999999999988765433
No 150
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.93 E-value=1.1e-09 Score=100.36 Aligned_cols=121 Identities=25% Similarity=0.239 Sum_probs=93.4
Q ss_pred HHHHHHHHHh--cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIEN--RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~--~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
.-+..++... ....++.+|||.+.|-|..++.++++|+.+|+.+|.++ .++.|.-|--..+....+|+++.||+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3444444443 23456899999999999999999999999999999996 66776654322222345689999999887
Q ss_pred c--CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 E--LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~--~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
- ++ ++||+||.+|+-..+..+-.-+.+.++++|+|||||.++-.
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 3 33 67999999999776666666788999999999999999743
No 151
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.93 E-value=6.1e-10 Score=101.71 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=88.0
Q ss_pred hHHHhhhhhhhhHhhhhhhhh--hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVR--TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r--~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~ 103 (414)
..|+-|..... .+|-+... .....+.++......+-+++||+|||||..+..+-.. +.+++|||+| .|++.|.+
T Consensus 89 ~LFD~~Ae~Fd--~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFD--HILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHH--HHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHh
Confidence 34555555442 33444432 2344455555554444579999999999998877655 5579999999 59988876
Q ss_pred HHHhCCCCCCcEEEEEcccccc---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 104 LIAGNPSLGERITVIKGKVEEV---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 104 ~~~~n~~l~~~i~vi~~d~~~~---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+- +-+ ++.+++...+ ..+++||+|++.-+..++-. ++.++-.+..+|+|||.+.++.-+
T Consensus 166 Kg-----~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 166 KG-----LYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cc-----chH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecc
Confidence 41 211 2333444333 23479999998555444443 889999999999999999887543
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.93 E-value=7.5e-09 Score=97.90 Aligned_cols=106 Identities=26% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
..|...+...+|++|||.|.|+|.++..++++ +..+|+..|.. +.++.|+++++.++ +.+++++.+.|+.+-.+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccc
Confidence 45667778889999999999999999999986 34599999998 69999999999997 88899999999965322
Q ss_pred --CCceeEEEEcCCccccCChhhHHHHHHHHHhcc-CCCeEEE
Q 015038 128 --PEKADILISEPMGTLLVNERMLETYVIARDRFL-VPMGKMF 167 (414)
Q Consensus 128 --~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~li 167 (414)
...+|.|+.+++.- ...+..+.+.| |+||.+.
T Consensus 109 ~~~~~~DavfLDlp~P--------w~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 109 ELESDFDAVFLDLPDP--------WEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp T-TTSEEEEEEESSSG--------GGGHHHHHHHE-EEEEEEE
T ss_pred cccCcccEEEEeCCCH--------HHHHHHHHHHHhcCCceEE
Confidence 35799999876543 33445667889 8999985
No 153
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.92 E-value=8.8e-09 Score=94.51 Aligned_cols=104 Identities=32% Similarity=0.320 Sum_probs=74.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+.+. ..++.+|||+.||.|.+++.+|+. .+++|+|+|+++ .++.++++++.|+ +.++|.++++|..++.....
T Consensus 93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~~~~~~ 169 (200)
T PF02475_consen 93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREFLPEGK 169 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG---TT-
T ss_pred HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHhcCccc
Confidence 334444 356889999999999999999983 456899999996 7799999999997 88999999999999866789
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+|-|+++.+.... .++.++.+++++||++
T Consensus 170 ~drvim~lp~~~~-------~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLPESSL-------EFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--TSSGG-------GGHHHHHHHEEEEEEE
T ss_pred cCEEEECChHHHH-------HHHHHHHHHhcCCcEE
Confidence 9999998765442 3455567889999876
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.91 E-value=1.5e-08 Score=104.17 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---- 126 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---- 126 (414)
...+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|++ .+++.|++++..|+ + .+++++.+|+.+.-
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQP 357 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHH
Confidence 3444455544566899999999999999999864 589999999 59999999999886 4 57999999997641
Q ss_pred C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..+||+|+.+++-..+. ..++..+.+ ++|+++++++.
T Consensus 358 ~~~~~~D~vi~dPPr~G~~-----~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKGCA-----AEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred hcCCCCCEEEECcCCCCCC-----HHHHHHHHh-cCCCEEEEEcC
Confidence 1 24699999998854332 344444443 78998877653
No 155
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=1e-08 Score=93.90 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=67.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-cc-C-CCceeEEEEcC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VE-L-PEKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~-~-~~~fDvIis~~ 138 (414)
++++|||+|||+|.++..+++.+...++|+|++ ++++.|++ + +++++.+|+.+ +. . +++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 567999999999999998887654568999999 57777653 1 26788888875 32 3 36899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCC
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
..+++.+ +..+++++.|.++++
T Consensus 84 ~l~~~~d---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 TLQATRN---PEEILDEMLRVGRHA 105 (194)
T ss_pred HhHcCcC---HHHHHHHHHHhCCeE
Confidence 7777655 667777777776643
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=99.46 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.|.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++..++ ..++++++++|+.+...+
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~~~- 100 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTEFP- 100 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhccc-
Confidence 445566666667788999999999999999998754 69999999 59999999887654 457899999999887653
Q ss_pred ceeEEEEcCCcccc
Q 015038 130 KADILISEPMGTLL 143 (414)
Q Consensus 130 ~fDvIis~~~~~~l 143 (414)
.+|+|++|++.+.-
T Consensus 101 ~~d~VvaNlPY~Is 114 (294)
T PTZ00338 101 YFDVCVANVPYQIS 114 (294)
T ss_pred ccCEEEecCCcccC
Confidence 78999999876543
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=2.2e-08 Score=90.66 Aligned_cols=118 Identities=21% Similarity=0.253 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCC-e---------EEEEeCh-HHHHHHHHHHHhCCCCCCcEEE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK-H---------VYAVEAS-EMAEYARKLIAGNPSLGERITV 117 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~-~---------V~gvD~s-~~~~~a~~~~~~n~~l~~~i~v 117 (414)
.....++.......++..|||-.||+|.+.+.++..+.. . ++|+|++ .++..|++|+...+ +...+.+
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~ 92 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDF 92 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEE
Confidence 445567777766677889999999999999998876332 2 7899999 58899999999887 7888999
Q ss_pred EEccccccc-CCCceeEEEEcCCccccCC-----hhhHHHHHHHHHhccCCCeEEE
Q 015038 118 IKGKVEEVE-LPEKADILISEPMGTLLVN-----ERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 118 i~~d~~~~~-~~~~fDvIis~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.|+.+++ ..+.+|+||++++...-.. +.....+++.+.+.|++...++
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999998 4579999999988543222 2334567788889999944443
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=93.70 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEE-cccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIK-GKVE 123 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~-~d~~ 123 (414)
+..|...+.+. ...++|||||++.|.-++.+|.. . ..++++||.+ ++++.|++++++.+ +.++|+++. +|..
T Consensus 47 ~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal 122 (219)
T COG4122 47 TGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDAL 122 (219)
T ss_pred HHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHH
Confidence 45555555544 47889999999999999999986 3 4589999999 59999999999997 888999999 5776
Q ss_pred ccc---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 124 EVE---LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 124 ~~~---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+.- ..++||+|+.+. +......+++.+.++|+|||+++.+..-..
T Consensus 123 ~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 652 247999999642 233456778888899999999988765443
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=97.38 Aligned_cols=87 Identities=25% Similarity=0.404 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+.+.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++.. ..+++++++|+.++..+
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCCch
Confidence 3445566666666789999999999999999999854 79999999 588998887653 24799999999987665
Q ss_pred CceeEEEEcCCccc
Q 015038 129 EKADILISEPMGTL 142 (414)
Q Consensus 129 ~~fDvIis~~~~~~ 142 (414)
.+|.|++|++.+.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988553
No 160
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.82 E-value=2.7e-08 Score=94.34 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C------CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L------PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~------~~~ 130 (414)
.+.++|||||+++|.-++.+|++ + ..+|+++|.+ +.++.|++++++.+ +.++|+++.+++.+.- + .++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCCc
Confidence 46789999999999999999876 2 3489999999 58899999999987 8899999999987751 1 258
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
||+|+.+. +......++..+.++|+|||+++++..-
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 99999753 2333566677778999999999876543
No 161
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.82 E-value=1.7e-08 Score=97.53 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++|+.+++.++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHH
Confidence 344555655556788999999999999999999876 79999999 588888876532 47999999999886653
Q ss_pred c-eeEEEEcCCccc
Q 015038 130 K-ADILISEPMGTL 142 (414)
Q Consensus 130 ~-fDvIis~~~~~~ 142 (414)
. .|.||+|++.+.
T Consensus 104 ~~~~~vv~NlPY~i 117 (272)
T PRK00274 104 LQPLKVVANLPYNI 117 (272)
T ss_pred cCcceEEEeCCccc
Confidence 2 599999987443
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=3.6e-08 Score=96.37 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-cccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-KVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~ 126 (414)
..+.+++.+.....+|..|||--||||.+.+.+.-.|+ +++|+|++ .|++-|+.|++..+ ..+ ..+... |+..++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~lp 259 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEecccccCC
Confidence 44566777777778899999999999999999999998 69999999 69999999999875 433 555555 999999
Q ss_pred CCCc-eeEEEEcCCcccc---C---ChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 LPEK-ADILISEPMGTLL---V---NERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~~~~-fDvIis~~~~~~l---~---~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++++ +|.|+++|+..-- . -+.....+++.+.+.||+||.+++
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 8864 9999999873211 1 134577888999999999998854
No 163
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.81 E-value=8.4e-08 Score=90.76 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
.+.......+.++|||||+|+|.++..++++ ..-+++.+|..+.++.+++ .++|+++.+|+. -+.|. +|
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~--------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE--------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH--------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc--------ccccccccccHH-hhhcc-cc
Confidence 3444554455679999999999999999987 4458999999888877777 357999999998 45666 99
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCC--eEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPM--GKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg--G~lip~~~ 171 (414)
+++...+.|...+ .....+|+++++.|+|| |++++...
T Consensus 161 ~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9998877777655 44678899999999999 99887644
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1.9e-08 Score=92.70 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCC-------------------------
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLG------------------------- 112 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~------------------------- 112 (414)
..+.++.+|||||.+|.++..+|+. |+..|.|+|+++ .+..|+++++.--...
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3467889999999999999999987 888999999996 7799999875321000
Q ss_pred ---------------CcEEEEEcccccccCCCceeEEEEcCCcc--ccC-ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 113 ---------------ERITVIKGKVEEVELPEKADILISEPMGT--LLV-NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 113 ---------------~~i~vi~~d~~~~~~~~~fDvIis~~~~~--~l~-~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+..+...|+.+. ...+||+|+|-.+.- ++. +..-+..++..+.++|.|||++++.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0111111222211 125799999854321 222 2334788999999999999999854
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.80 E-value=5.4e-08 Score=90.90 Aligned_cols=106 Identities=17% Similarity=0.055 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHH------h-CC---CCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIA------G-NP---SLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~------~-n~---~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+||+.|||.|.-+..+|+.|.. |+|+|+|+ .++.+.+... . +. .-..+|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35689999999999999999999995 99999996 4455533110 0 00 0135799999999998532
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+-....+.+ ++.+...+.+.+.++|+|||.++.-
T Consensus 121 ~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 589998865555555 5677889999999999999987643
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.77 E-value=7.5e-08 Score=89.79 Aligned_cols=107 Identities=26% Similarity=0.228 Sum_probs=78.5
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh--C----CC----CCCcEEEEEcccccccC
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG--N----PS----LGERITVIKGKVEEVEL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~--n----~~----l~~~i~vi~~d~~~~~~ 127 (414)
+...++.+||..|||.|.-...+|+.|. +|+|+|+|+ .++.+.+.... . +. -..+|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 4445677999999999999999999998 699999996 44555322110 0 00 12468999999999875
Q ss_pred C--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 128 P--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 128 ~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. ++||+|+=....+.+ ++.+...+.+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 5 579999965555554 46778999999999999999954
No 167
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=90.85 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=74.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccC-CCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VEL-PEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~-~~~fDvIis~~~ 139 (414)
+..-|||||||+|+-+..+...|. ..+|+|+| .|++.|.+..-+ -.++.+|+-+ +++ |+.||-+||-..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-------gdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-------GDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-------cCeeeeecCCCCCCCCCccceEEEeee
Confidence 567899999999999999888885 69999999 599999863221 2477777754 343 379999997543
Q ss_pred ccccCC--------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVN--------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++.+ ..-+..++..++..|++|+..+++.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 333322 2336677888999999999987653
No 168
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.75 E-value=3.4e-08 Score=94.56 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCC----CcEEEEEccccccc------CCC-
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLG----ERITVIKGKVEEVE------LPE- 129 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~----~~i~vi~~d~~~~~------~~~- 129 (414)
.++..++|+|||-|.-.+-+-++|..+++|+|+.+ .++.|+++.+...... -.+.++.+|..... .+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 56788999999999999999999999999999996 7788888765432111 24789999886542 233
Q ss_pred ceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|-|-...| .+..+.....++.++.+.|+|||++|-+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 499999876555 4456777889999999999999999643
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.74 E-value=6.4e-08 Score=97.61 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=78.0
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMG 140 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~ 140 (414)
+.+|||++||+|.+++.++.. ++.+|+++|+++ .++.++++++.|+ +. +++++++|+..+-. .++||+|+.+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKDANALLHEERKFDVVDIDPFG 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhhHHHHHhhcCCCCEEEECCCC
Confidence 468999999999999999864 667899999995 8899999999886 53 57799999977533 4679999999863
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ...++..+.+.+++||+++++
T Consensus 136 s-------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 S-------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-------cHHHHHHHHHHhcCCCEEEEE
Confidence 2 234556655678999999887
No 170
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=93.19 Aligned_cols=99 Identities=21% Similarity=0.151 Sum_probs=72.6
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCcccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMGTLL 143 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~~~l 143 (414)
.++|+|||+|..++.+|.. .++|+|+|+| .|++.|++.....- ......+...++.++.- ++++|+|++.--.|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999777777776 6689999999 59998887654332 22334555555555532 4799999997666665
Q ss_pred CChhhHHHHHHHHHhccCCCe-EEEccc
Q 015038 144 VNERMLETYVIARDRFLVPMG-KMFPSV 170 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG-~lip~~ 170 (414)
. ++.+.+.++|+||++| .+.+-.
T Consensus 114 d----le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 D----LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred c----hHHHHHHHHHHcCCCCCEEEEEE
Confidence 4 6788899999999887 554433
No 171
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.73 E-value=1.2e-07 Score=94.83 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=72.7
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------C----
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----------P---- 128 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----------~---- 128 (414)
.+|||+|||+|.+++.+++. +++|+|||++ ++++.|++++..|+ + .+++++.+|+.++.. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 46999999999999988876 4589999999 59999999999886 5 469999999977421 1
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++|+|+.+|+-..+ . +.++..+. +|+++++++..
T Consensus 276 ~~~~~d~v~lDPPR~G~-~----~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGL-D----PDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCCCC-c----HHHHHHHH---cCCcEEEEEcC
Confidence 137999999995433 2 34444443 37787776644
No 172
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.73 E-value=4.7e-08 Score=88.11 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
.++.+|||+|||.|.+...+.+....+.+|+|+++ .+..|.+ + .+.++++|+.+-- + .++||.||.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r-----Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R-----GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c-----CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 46899999999999998888876445799999994 4444433 2 2789999997731 2 3789999975
Q ss_pred CCccccCChhhHHHHHHHHHhccCC
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVP 162 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~Lkp 162 (414)
-....+. .++.+++++.|.-|.
T Consensus 83 qtLQ~~~---~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRVGRR 104 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHhcCe
Confidence 4444433 367778777666443
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.72 E-value=8.4e-08 Score=94.18 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCEEEEECCCccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhC-CCCCCcEEEEE-ccccccc-----CCCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGN-PSLGERITVIK-GKVEEVE-----LPEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n-~~l~~~i~vi~-~d~~~~~-----~~~~fDv 133 (414)
++.+|||||||+|.+...++. ....+++|+|+++ .++.|++++..| + +.++|+++. .+..++. ..++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999866655554 3344799999995 889999999999 5 888998865 3333221 2368999
Q ss_pred EEEcCCcccc
Q 015038 134 LISEPMGTLL 143 (414)
Q Consensus 134 Iis~~~~~~l 143 (414)
|+|||+.+--
T Consensus 193 ivcNPPf~~s 202 (321)
T PRK11727 193 TLCNPPFHAS 202 (321)
T ss_pred EEeCCCCcCc
Confidence 9999997643
No 174
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.69 E-value=1e-07 Score=89.35 Aligned_cols=90 Identities=27% Similarity=0.360 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....+...|||||.|||.++..+.++|+ +|+|+|++ .|+....+++..-+ .+.+..++.+|+...++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccccCCC
Confidence 44567777888888899999999999999999999977 59999999 49988888887765 56899999999998876
Q ss_pred CCceeEEEEcCCcc
Q 015038 128 PEKADILISEPMGT 141 (414)
Q Consensus 128 ~~~fDvIis~~~~~ 141 (414)
| .||++|+|.+..
T Consensus 122 P-~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 P-RFDGCVSNLPYQ 134 (315)
T ss_pred c-ccceeeccCCcc
Confidence 5 899999987643
No 175
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.4e-07 Score=82.04 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..+.+||||||+|..+-++++. +...+.++|+|+ .++..++.++.|+ .++.++..|+.+--.++++|+++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhccCCccEEEECCC
Confidence 3678999999999999999886 455789999996 5566677777765 458899999887655589999999987
Q ss_pred cccc------------------CChhhHHHHHHHHHhccCCCeEEEc
Q 015038 140 GTLL------------------VNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 140 ~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.--- .+......++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 2211 1222356788888889999999864
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.68 E-value=1.6e-07 Score=94.29 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=73.0
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C--------------
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-------------- 127 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-------------- 127 (414)
.+|||++||+|.+++.+++. +++|+|||.+ ++++.|++++..|+ + .+++++.+|+.++- +
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 57999999999999988875 5689999999 59999999999886 5 47999999997741 1
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..+||+|+.+|+-..+ . +.++..+. +|+++++++...
T Consensus 285 ~~~~~D~v~lDPPR~G~-~----~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL-D----DETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCCCCC-c----HHHHHHHH---ccCCEEEEEeCH
Confidence 1158999999995432 2 34444443 367777766443
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=2.6e-07 Score=88.24 Aligned_cols=85 Identities=29% Similarity=0.400 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.....++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++.+
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh-
Confidence 345566666666788999999999999999999875 69999999 588888876642 35799999999987654
Q ss_pred cee---EEEEcCCcc
Q 015038 130 KAD---ILISEPMGT 141 (414)
Q Consensus 130 ~fD---vIis~~~~~ 141 (414)
.+| +|+++++.+
T Consensus 91 ~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 DFPKQLKVVSNLPYN 105 (253)
T ss_pred HcCCcceEEEcCChh
Confidence 566 999987744
No 178
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=92.43 Aligned_cols=98 Identities=27% Similarity=0.308 Sum_probs=83.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
..|.+|||+-||.|.+++.+|+.|..+|+|+|+|+ .++.++++++.|+ +.++++.+++|..++... +.+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35899999999999999999999987799999996 7799999999997 888899999999998766 78999998655
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.. ...++..+.+.+++||++-
T Consensus 266 ~~-------a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 266 KS-------AHEFLPLALELLKDGGIIH 286 (341)
T ss_pred Cc-------chhhHHHHHHHhhcCcEEE
Confidence 42 2345556667888999873
No 179
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=4.7e-08 Score=90.25 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred EEEEECCCccHHHHHHHHcCC---CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEEE
Q 015038 66 VVVDVGAGSGILSLFAAQAGA---KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILIS 136 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~---~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIis 136 (414)
+||+||||.|.....+.+-.. -+|+++|.|+ .++..+++...+ ..++.....|+..-. .++.+|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD---ESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc---hhhhcccceeccchhccCCCCcCccceEEE
Confidence 799999999999998888633 3899999996 667766665443 245555555554432 2368999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
-...+.+..+. ....+..+.++|||||.+++..+-
T Consensus 151 IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecc
Confidence 77777776655 567779999999999999876543
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=9.9e-08 Score=81.41 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.|-....+..|++++|+|||+|.++..++-.++..|.|+|+++ .++.+.+|+.. +.-++.++++|+.+..+. +.|
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE---fEvqidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE---FEVQIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH---hhhhhheeeeeccchhccCCeE
Confidence 3444566789999999999999999888777888999999995 78999999887 456789999999998765 689
Q ss_pred eEEEEcCCccc
Q 015038 132 DILISEPMGTL 142 (414)
Q Consensus 132 DvIis~~~~~~ 142 (414)
|.++.|++...
T Consensus 116 DtaviNppFGT 126 (185)
T KOG3420|consen 116 DTAVINPPFGT 126 (185)
T ss_pred eeEEecCCCCc
Confidence 99999987543
No 181
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.63 E-value=4e-07 Score=90.30 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCC----------------------------------------e
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK----------------------------------------H 88 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~----------------------------------------~ 88 (414)
+++..+|.....-.++..++|--||+|.+.+.+|..+.. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 556678888777777789999999999999999987531 3
Q ss_pred EEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc-ccCChhhHH----HHHHHHHhccC
Q 015038 89 VYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT-LLVNERMLE----TYVIARDRFLV 161 (414)
Q Consensus 89 V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~-~l~~e~~l~----~~l~~~~r~Lk 161 (414)
++|+|++ .+++.|+.|+...+ +.+.|+|.++|+..+..+ +.+|+|||||+.. -+..+.+.. .+...+++.++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 7899999 59999999999987 899999999999999877 8999999999843 344443343 44455566677
Q ss_pred CCeEEEcccc
Q 015038 162 PMGKMFPSVG 171 (414)
Q Consensus 162 pgG~lip~~~ 171 (414)
.-+..+++..
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 6677765544
No 182
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=6.7e-08 Score=88.75 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
..++||.|||.|..+..+...-+.+|-.||.+ ..++.|++.+... .....++++..++++.++ .+||+|.+-|...
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~--~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD--NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG--GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc--CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46899999999999987765557899999999 5889998776542 234578889999999775 6999999999988
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++.++. +-.+|..+...|+|+|.|++-.+
T Consensus 134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 134 HLTDED-LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GS-HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence 887655 78899999999999999987543
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.62 E-value=2.3e-07 Score=86.94 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEE-EEEccccc-----c
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERIT-VIKGKVEE-----V 125 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~-vi~~d~~~-----~ 125 (414)
.++.......++++|||+|||+|.++..+++.|+++|+|+|+++ |+.. .+..+ .++. +-..+++. +
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~---~l~~~----~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE---KLRQD----ERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH---HHhcC----CCeeEeecCCcccCCHhHc
Confidence 33333333468889999999999999999999999999999995 6643 12222 1222 22223332 2
Q ss_pred cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 126 ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..+ ..+|++++. +..++..+.++|+| |.++
T Consensus 138 ~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 138 FPDFATFDVSFIS-----------LISILPELDLLLNP-NDLT 168 (228)
T ss_pred CCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEE
Confidence 111 256666542 23346677788999 7665
No 184
>PLN02823 spermine synthase
Probab=98.60 E-value=2.8e-07 Score=91.22 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=80.2
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCC-C-CCCcEEEEEccccccc--CCCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNP-S-LGERITVIKGKVEEVE--LPEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~-~-l~~~i~vi~~d~~~~~--~~~~fDvIis 136 (414)
..++||.||+|.|.++..+++. +..+|++||+++ +++.|++.+..+. . -..+++++.+|...+- .+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999998886 567899999995 8899999875431 1 1468999999998862 2368999999
Q ss_pred cCCcccc---CChhhHHHHHH-HHHhccCCCeEEEcccc
Q 015038 137 EPMGTLL---VNERMLETYVI-ARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 137 ~~~~~~l---~~e~~l~~~l~-~~~r~LkpgG~lip~~~ 171 (414)
+.....- ...-.-..+++ .+.+.|+|||+++....
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8542110 00001245666 78899999999876543
No 185
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.1e-07 Score=92.89 Aligned_cols=115 Identities=25% Similarity=0.266 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.....+.+...++.+|||+-||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|+ ..+ ++++.++++++..
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~-i~N-~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANG-IDN-VEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcC-CCc-EEEEeCCHHHHhh
Confidence 334455556666667889999999999999999975 5579999999 58899999999997 554 9999999998754
Q ss_pred C----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 P----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 ~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. ..+|+|+.+|+-.++. +.+++.+. .++|..+++++.+.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGAD-----REVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred hccccCCCCEEEECCCCCCCC-----HHHHHHHH-hcCCCcEEEEeCCH
Confidence 3 4789999999987764 24444443 46888888877554
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.7e-07 Score=87.44 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.|.+.....++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+. ..++++++++|+.+++++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchh
Confidence 456677777777789999999999999999999977 599999995 7787777754 2367999999999998886
Q ss_pred --ceeEEEEcCCccc
Q 015038 130 --KADILISEPMGTL 142 (414)
Q Consensus 130 --~fDvIis~~~~~~ 142 (414)
.++.|++|.+.+.
T Consensus 93 l~~~~~vVaNlPY~I 107 (259)
T COG0030 93 LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCCCEEEEcCCCcc
Confidence 7899999987654
No 187
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.55 E-value=4.7e-07 Score=83.04 Aligned_cols=104 Identities=14% Similarity=0.236 Sum_probs=72.5
Q ss_pred CEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cCCCceeEEEEcC
Q 015038 65 RVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKADILISEP 138 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~~~fDvIis~~ 138 (414)
..+||||||.|.+.+.+|+. .-..++|+|+. +.+..|.+++...+ + .|+.++++|+..+ ..++++|-|..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 38999999999999988887 45689999999 56666666665543 3 6899999998873 2347899999876
Q ss_pred CccccCChh-----hHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNER-----MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~-----~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.-+.-... .-..++..+.+.|+|||.+.+.+
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 644322111 12577888899999999986543
No 188
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.53 E-value=1.6e-06 Score=83.70 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC--CCCCcEEEEEccccccc--CCCceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP--SLGERITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~--~l~~~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
.++||-||-|.|..+..+++.. ..+++.||+++ +++.|++.+.... ....|++++.+|..++- .+++||+||++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999985 67999999995 8899999876432 12479999999998873 33589999987
Q ss_pred CCccccCChhh-HHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 138 PMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 138 ~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
........+.. -..+++.+++.|+++|+++....+.+...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 55432221111 26788999999999999998877766655
No 189
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=8.2e-07 Score=96.58 Aligned_cols=118 Identities=23% Similarity=0.166 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHcC------------------------------------------
Q 015038 49 GTYYAAVIENRAD-FIGRVVVDVGAGSGILSLFAAQAG------------------------------------------ 85 (414)
Q Consensus 49 ~~~~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~~a~~g------------------------------------------ 85 (414)
+.+..+|+....- .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 5566777766543 457899999999999998887531
Q ss_pred -CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC---CceeEEEEcCCcc-ccCChhhHHHHHHHHHhc
Q 015038 86 -AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP---EKADILISEPMGT-LLVNERMLETYVIARDRF 159 (414)
Q Consensus 86 -~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~ 159 (414)
..+++|+|++ .+++.|++|+..++ +.+.+++.++|+.++..+ +++|+|++||+.. -+..+..+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 1269999999 58999999999987 888899999999887544 4699999998843 232333344444433333
Q ss_pred cC---CCeEEE
Q 015038 160 LV---PMGKMF 167 (414)
Q Consensus 160 Lk---pgG~li 167 (414)
|+ +|+.++
T Consensus 334 lk~~~~g~~~~ 344 (702)
T PRK11783 334 LKQQFGGWNAA 344 (702)
T ss_pred HHHhCCCCeEE
Confidence 33 666553
No 190
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.51 E-value=7.4e-07 Score=89.53 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
+.+|||+.||+|..++.++.. |+++|+++|+|+ .++.+++|++.|+ . .+++++++|+..+-. ..+||+|..+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 358999999999999999987 788999999995 7799999999886 4 368999999987632 25799999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++. ...++..+.+.+++||.++++.
T Consensus 123 fGs-------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FGT-------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCC-------cHHHHHHHHHhcccCCEEEEEe
Confidence 532 2356677778899999998774
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.48 E-value=1.6e-06 Score=89.51 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEE
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
...++.+|||++||.|.-+..+|.. +...|+|+|++ .-++.+++++...+ + .++.+.+.|...+. .++.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~-~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-V-SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCchhhhhhhchhhcCeE
Confidence 4468899999999999999888876 23489999999 57888899998875 4 45889999987653 34689999
Q ss_pred EEcCCcc----ccCChhh---------------HHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 135 ISEPMGT----LLVNERM---------------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 135 is~~~~~----~l~~e~~---------------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
+.+.+-+ +-.++.. -..+|..+.++|||||+|+-+.|++ .|-+.+.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~--~~eENE~ 252 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL--NREENQA 252 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC--CHHHHHH
Confidence 9776633 2222111 1467888899999999999888873 3444443
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.47 E-value=9.6e-07 Score=78.22 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=55.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC---C-ceeEEEEcCC
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP---E-KADILISEPM 139 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~-~fDvIis~~~ 139 (414)
.+|+|+.||.|..++.+|+.. .+|+|||+++ .++.|+.+++-.+ ..++|+++++|+.++... . .+|+|++.|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 379999999999999999984 4799999995 8899999999887 788999999999886432 1 2899999887
Q ss_pred c
Q 015038 140 G 140 (414)
Q Consensus 140 ~ 140 (414)
.
T Consensus 79 W 79 (163)
T PF09445_consen 79 W 79 (163)
T ss_dssp B
T ss_pred C
Confidence 3
No 193
>PRK04148 hypothetical protein; Provisional
Probab=98.46 E-value=2.3e-06 Score=73.22 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccH-HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGI-LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~-ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-- 128 (414)
..|.++....++++|||||||+|. ++..+++.|. .|+|+|+++ .++.|+++ .+.++.+|+.+..+.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHH
Confidence 445555555667899999999996 8999998887 699999996 55555443 268999999886554
Q ss_pred CceeEEEE
Q 015038 129 EKADILIS 136 (414)
Q Consensus 129 ~~fDvIis 136 (414)
+.+|+|.+
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 68999998
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.43 E-value=2.1e-06 Score=75.16 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
..+.+........+..|||+|.|||.++..+.+.|. ..++++|.| +.+....+.. +.+.++++|+.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHH
Confidence 345566666667788999999999999999999875 489999999 5666665543 23679999998875
Q ss_pred -C----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -L----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ...||.|||..+.-.+.-.. --.+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~-~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHR-RIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 2 24699999976654443322 456778888889999988643
No 195
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=8.1e-07 Score=79.73 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
+.+..+.....+++|||+|+|+|+.++.++++|++.|++.|+.+ .....+.|++.|+ -.|.+...|... .+..|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g--~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG--SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC--CCcce
Confidence 44555566678999999999999999999999999999999997 4466677777776 458888888766 45789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeE
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
|+|+. +..+.+......++. +.+.|+..|.
T Consensus 144 Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 144 DLLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred eEEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 99996 444455555566666 4445555554
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.42 E-value=2.8e-06 Score=79.57 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-CceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LP-EKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~-~~fDvIis~ 137 (414)
...+||||||.|.+...+|+. .-..++|||+. +.+..|.+.+.+.+ +. |+.+++.|+.++- .+ ++.|-|..+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 368999999999998888887 44589999998 67777777777654 43 8999999998762 23 489999987
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.-+.-.. -.-..++..+.+.|+|||.+.+.
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 664432211 11257788889999999998654
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.42 E-value=5e-06 Score=79.29 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=94.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
.+|........+-+||||.||.|...+.+... + ..+|...|.|+ .++..++.++.++ +.+.++|.++|+.+..
T Consensus 125 ~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 125 QAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCCHhHh
Confidence 44444433345669999999999888777765 2 35899999996 7799999999987 8888899999998753
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+..+.+++|...+...+.+..++...+..+.+.+.|||.+|.+.-++|
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 224678888777777777767788888999999999999987664444
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.41 E-value=8.3e-07 Score=78.79 Aligned_cols=78 Identities=15% Similarity=-0.007 Sum_probs=60.7
Q ss_pred EEEeCh-HHHHHHHHHHHhCC-CCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 90 YAVEAS-EMAEYARKLIAGNP-SLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 90 ~gvD~s-~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+|+|+| +|++.|+++..... ....+++++.+|+++++.+ ++||+|++....+++.+ ...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 489999 59999987765321 1235799999999998775 58999999765555543 678899999999999999
Q ss_pred Eccc
Q 015038 167 FPSV 170 (414)
Q Consensus 167 ip~~ 170 (414)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7653
No 199
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.40 E-value=5e-06 Score=83.24 Aligned_cols=90 Identities=30% Similarity=0.313 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
+...+.+.+...++ .|||+-||+|.+++.+|+.. ++|+|||.+ ++++.|++++..|+ + ++++++.++++++..
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~-i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNG-I-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHH
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcC-C-CcceEEEeeccchhHHH
Confidence 33445555555445 89999999999999999864 579999999 58899999999997 5 579999988765421
Q ss_pred ---------------CCceeEEEEcCCccccC
Q 015038 128 ---------------PEKADILISEPMGTLLV 144 (414)
Q Consensus 128 ---------------~~~fDvIis~~~~~~l~ 144 (414)
...+|+|+.+|+-.++.
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 12689999999977764
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.39 E-value=9e-07 Score=84.17 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=79.4
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC--CCCCcEEEEEccccccc--CCC-ceeEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP--SLGERITVIKGKVEEVE--LPE-KADILI 135 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~--~l~~~i~vi~~d~~~~~--~~~-~fDvIi 135 (414)
++++||-||.|.|..+..+.+.. .++|++||+++ +++.|++.+.... .-+.|++++.+|...+- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 67899999999999999999875 67999999995 7799988765421 12468999999998762 335 899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEccc
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+.......... .-..+++.+++.|+|||+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 976642211111 12577889999999999998765
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.38 E-value=4.8e-06 Score=75.59 Aligned_cols=98 Identities=24% Similarity=0.408 Sum_probs=74.3
Q ss_pred EEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcccc
Q 015038 66 VVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLL 143 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l 143 (414)
+++|||+|.|.-++.+|-. +..+++.+|.+ .-+...+..+..-+ + .+++++++.+++....++||+|++-.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEEPEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecccccCCCccEEEeehhcC--
Confidence 8999999999988888876 44589999998 45555555555544 5 36999999999944457999999976543
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+..++.-+.++|++||.++...+.
T Consensus 127 -----l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 127 -----LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -----HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 567778889999999999866554
No 202
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.35 E-value=2.8e-06 Score=77.50 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=54.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
+..+|.|+|||.+.++..+. .+. +|+..|+-. .| -.++.+|+..++++ +.+|++|+.+-..
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n------~~Vtacdia~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN------PRVTACDIANVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS------TTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC------CCEEEecCccCcCCCCceeEEEEEhhhh
Confidence 45699999999999985543 233 599999843 12 23777999999887 6899999753221
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+ .+ +..++.++.|.|||||.+.+....
T Consensus 134 G-Tn---~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 134 G-TN---WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp S-S----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C-CC---cHHHHHHHHheeccCcEEEEEEec
Confidence 1 12 678889999999999999766544
No 203
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.33 E-value=2.3e-06 Score=78.41 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCCEEEEECCCcc----HHHHHHHHc---CC---CeEEEEeCh-HHHHHHHHHHH-------------------hCC-C-
Q 015038 63 IGRVVVDVGAGSG----ILSLFAAQA---GA---KHVYAVEAS-EMAEYARKLIA-------------------GNP-S- 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG----~ls~~~a~~---g~---~~V~gvD~s-~~~~~a~~~~~-------------------~n~-~- 110 (414)
+.-+|+..||+|| .+++.+... .. -+|+|.|+| .+++.|++-.- ..+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4458999999999 455656552 12 289999999 47788876210 000 0
Q ss_pred -----CCCcEEEEEccccc-ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 111 -----LGERITVIKGKVEE-VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 111 -----l~~~i~vi~~d~~~-~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+..+|+|...|+.+ .+..++||+|+|..+..++ ++.....+++.+.+.|+|||.+++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 13578899999888 3444799999997776655 455578899999999999999987644
No 204
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.32 E-value=4e-06 Score=78.99 Aligned_cols=94 Identities=27% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~ 140 (414)
+..++||||+|.|..+..++.. .++|++.|.| .|....+ +.| ++++.. .++. .+.+||+|.|-.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg-----~~vl~~--~~w~~~~~~fDvIscLNv- 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKG-----FTVLDI--DDWQQTDFKFDVISCLNV- 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCC-----CeEEeh--hhhhccCCceEEEeehhh-
Confidence 4578999999999999999876 5579999999 4753333 222 344432 2232 2358999998433
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+..-..+..+++.+++.|+|+|++++...
T Consensus 161 --LDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 161 --LDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred --hhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33333478899999999999999987643
No 205
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.29 E-value=1.7e-06 Score=83.72 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=76.0
Q ss_pred CEEEEECCCcc----HHHHHHHHcC-----CCeEEEEeCh-HHHHHHHHHHH------------------h--C------
Q 015038 65 RVVVDVGAGSG----ILSLFAAQAG-----AKHVYAVEAS-EMAEYARKLIA------------------G--N------ 108 (414)
Q Consensus 65 ~~VLDiGcGtG----~ls~~~a~~g-----~~~V~gvD~s-~~~~~a~~~~~------------------~--n------ 108 (414)
-+|+..||+|| .+++.+.+.+ .-+|+|+|+| .+++.|++-+- . .
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 59999999999 4555565541 1379999999 58888876420 0 0
Q ss_pred ---CCCCCcEEEEEcccccccC--CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 109 ---PSLGERITVIKGKVEEVEL--PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 109 ---~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..+...|+|...|+.+.+. .++||+|+|..+..++. ......++..+.+.|+|||.+++...
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 0123567888888877432 47899999976665553 45578899999999999999876543
No 206
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.27 E-value=3.1e-06 Score=81.32 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+....+.|.+.+...++..|||||+|.|.++..+++.+ ++|+++|+++ +++..++.+.. ..+++++.+|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----cccceeeecchhccc
Confidence 34455667777766688999999999999999999988 6899999995 77777776552 357999999999987
Q ss_pred CCC----ceeEEEEcCCc
Q 015038 127 LPE----KADILISEPMG 140 (414)
Q Consensus 127 ~~~----~fDvIis~~~~ 140 (414)
.+. ....|+++.+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GGGHCSSSEEEEEEEETG
T ss_pred cHHhhcCCceEEEEEecc
Confidence 664 67889998775
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.27 E-value=8e-06 Score=80.23 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--------CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--------GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIK 119 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--------g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~ 119 (414)
....+.+...+...++.+|||.+||+|.+...+.+. ...+++|+|+++ ++..|+.++.-++.-..+..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 444556666666667779999999999998887762 445899999995 77778777654431123356888
Q ss_pred cccccccC---CCceeEEEEcCCcccc--CCh----------------hhHHHHHHHHHhccCCCeEEE
Q 015038 120 GKVEEVEL---PEKADILISEPMGTLL--VNE----------------RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 120 ~d~~~~~~---~~~fDvIis~~~~~~l--~~e----------------~~l~~~l~~~~r~LkpgG~li 167 (414)
+|...... ..+||+|+++|+.... ... ..--.++..+.+.|++||++.
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 88765433 2589999999985433 110 111246677789999999864
No 208
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.26 E-value=5.3e-06 Score=75.88 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc---
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--- 125 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--- 125 (414)
+.+.+.+.+.. .+.+|||||||||-.+..+|++ ..-+-.-.|.++ .....+..+...+ +.+-..-+..|+.+-
T Consensus 14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCc
Confidence 34445454432 3336999999999999988887 333556677774 3344444444433 322222333444332
Q ss_pred -c-----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 -E-----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 -~-----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ..+.||.|+|..+.|....+. .+.++..+.++|++||.+++.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEe
Confidence 1 235899999988888776544 688999999999999999754
No 209
>PRK00536 speE spermidine synthase; Provisional
Probab=98.25 E-value=1e-05 Score=77.29 Aligned_cols=105 Identities=15% Similarity=0.001 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC--CCCCCcEEEEEcccccccCCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN--PSLGERITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n--~~l~~~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
...++||-||.|.|..+..+++... +|+.||+++ +++.+++.+... ..-+.|++++.. +.+ ...++||+||.+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 4578999999999999999999864 899999995 889998854431 112467888862 221 1136899999874
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
. .. +.+.+.++|.|+|||+++.+..+.+..+
T Consensus 148 ~----~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 148 E----PD----IHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred C----CC----hHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 3 22 4566788999999999999888766543
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=1.2e-05 Score=74.28 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHH-------HHhCCCCCCcEEEEEccccc
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKL-------IAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~-------~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+.+.....++.+++|||||.|...+.+|. .+.++.+|||+.+ ..+.|+.. .+..+....++++.++|+.+
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 344555566788999999999998776664 4888899999984 44444432 22233224578999999876
Q ss_pred ccCC----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 125 VELP----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 125 ~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.. ...|+|+++.. .+++.....+ ......||+|.++|
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~---~F~~~l~~~L-~~~~~~lk~G~~II 155 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNT---CFDPDLNLAL-AELLLELKPGARII 155 (205)
T ss_dssp HHHHHHHGHC-SEEEE--T---TT-HHHHHHH-HHHHTTS-TT-EEE
T ss_pred cHhHhhhhcCCCEEEEecc---ccCHHHHHHH-HHHHhcCCCCCEEE
Confidence 5321 35899998643 3444444444 56667789998876
No 211
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=7.4e-06 Score=76.03 Aligned_cols=105 Identities=27% Similarity=0.345 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEE-EcccccccC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVI-KGKVEEVEL- 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi-~~d~~~~~~- 127 (414)
+..++....-..++++|||+|+-||.++..+.+.||++|||+|.. ..+.. .++. +.++.++ ..+++.+..
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~----d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRN----DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhc----CCcEEEEecCChhhCCHH
Confidence 345565666678899999999999999999999999999999997 32211 1222 2345544 346665543
Q ss_pred --CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 --PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 --~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+..|+++|+..+.. +..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvSFIS------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVSFIS------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEeehhh------HHHHHHHHHHhcCCCceEEE
Confidence 257899999743222 67788888999999998764
No 212
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.3e-06 Score=75.30 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCC--eEEEEeCh-HHHHHHHHHHHhCCC-------C-CCcEEEEEcccccccCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAK--HVYAVEAS-EMAEYARKLIAGNPS-------L-GERITVIKGKVEEVELP 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~--~V~gvD~s-~~~~~a~~~~~~n~~-------l-~~~i~vi~~d~~~~~~~ 128 (414)
..+|.+.||+|+|||.|+.++++. |+. .+.|||.- +.++.+++++.+.-. + ..++.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 568999999999999999998865 432 34999986 688999998875420 1 24678889999887655
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+||.|.+.. .....++.+ ...|++||.+++
T Consensus 160 ~a~YDaIhvGA-----aa~~~pq~l----~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA-----AASELPQEL----LDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc-----CccccHHHH----HHhhccCCeEEE
Confidence 6899999832 112223444 456788887753
No 213
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.19 E-value=7e-06 Score=76.68 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
....+|.|+|||-+-++. .. ..+|+.+|+-. .+-.++.+|+..++++ +++|++|+.+..
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhh
Confidence 345689999999988765 22 23699999742 1236788999999887 789999964321
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+..+ +..++.++.|+|++||.+++....
T Consensus 239 -Mgtn---~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 239 -MGTN---LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -hccc---HHHHHHHHHHHhccCceEEEEehh
Confidence 1122 788999999999999998765544
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=1.6e-05 Score=73.29 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-------CCCc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-------LPEK 130 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-------~~~~ 130 (414)
...++++||||.=||.-++..|.+ .-.+|+++|++ ...+.+.+..+..+ ..++|++++++..+.- ..+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 357899999999999888888776 22479999999 57788888888776 8899999999886641 1368
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
||.++.+. +......+...+.++||+||+++++...++-
T Consensus 150 fDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 150 FDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 99999642 2222345667778999999999887654443
No 215
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.12 E-value=5.9e-06 Score=82.12 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=117.9
Q ss_pred CCceeEEEEcCCccc--cCChhh-HHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHhhhccccccccccccc
Q 015038 128 PEKADILISEPMGTL--LVNERM-LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDL 204 (414)
Q Consensus 128 ~~~fDvIis~~~~~~--l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G~d~ 204 (414)
+++-|+++.+++... .+.... +--....+...+-|+-.+.|..+.+++.|...+.++.... +...+.|||+
T Consensus 427 ~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S------~~G~~~GFDl 500 (636)
T KOG1501|consen 427 PDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIAS------DVGTVNGFDL 500 (636)
T ss_pred CCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcc------ccccccccee
Confidence 455688877765221 111000 0111234456788999999999999999998888865321 2468899999
Q ss_pred ccccccccc-cCCCCCeEee-----cCCccccCCceEEEEecCCCCcccccceeeeEEEEEeecceeeeEEEEEEEEecC
Q 015038 205 TPLYGSAFH-GYFSQPVVDA-----FDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDG 278 (414)
Q Consensus 205 ~~~~~~~~~-~~~~~p~v~~-----~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~f~~ 278 (414)
+-+.+.... .-++..+++. +....+.++..+++|+|....... .-.+.+.+.+.-|++..|++++|.|
T Consensus 501 ~~~Dei~~kA~~~~da~~~E~~LWEY~~~~~~d~~eIL~F~~~~~V~~Q------k~~V~i~~~~sS~A~~mWME~~~~~ 574 (636)
T KOG1501|consen 501 SFFDEISTKARTATDAIVDEQSLWEYAGIVKGDAVEILRFPIDGRVSSQ------KCVVNIDNMSSSNAIPMWMEWEFGG 574 (636)
T ss_pred eehhHHHHhhchhhhhhhccchhhhccCeecCCceeEEEeccCCccccc------eeEEEccCCCccccceeeEEeeeCc
Confidence 988764321 1233333332 556778889999999998765543 3456678999999999999999997
Q ss_pred CccceeecCC-----CCC---CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEE
Q 015038 279 STVQRWLTTA-----PGA---PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTL 335 (414)
Q Consensus 279 ~~~~~~lsT~-----P~~---~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~ 335 (414)
.+ |||+ |.. +..|.+|.+|+...- +...-+++....+.+ +..||.++.
T Consensus 575 ~n----LSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~--L~~~ksl~~~~~F~~---~TGDI~~qF 630 (636)
T KOG1501|consen 575 IN----LSTGLLSISSAGVPEWNKGYKQGVYFPITA--LRNDKSLCLHALFDK---STGDINFQF 630 (636)
T ss_pred ee----ecccceeecCCCCcccCccccceeEEEhHH--hCCCceEEEEEEEcC---CCCceEEEe
Confidence 64 5554 332 246779999885322 222334444444322 455666654
No 216
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=3.3e-06 Score=77.53 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=77.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
...++|||||.|.+...+...|..+++-+|.| .|++.++..- .+ +-.+....+|-+.+++. .++|+|++..-.|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp---~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DP---SIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CC---ceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 45899999999999999999899999999999 6998877641 11 23456677787777765 6899999977666
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+..+ +...+..++..|||+|.++-
T Consensus 149 W~Nd---LPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 149 WTND---LPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhcc---CchHHHHHHHhcCCCccchh
Confidence 6544 67777888999999998863
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=3e-05 Score=71.79 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc-eeEEEEcCCc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK-ADILISEPMG 140 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~-fDvIis~~~~ 140 (414)
+++++|||+|.|.-++.+|-. ...+|+-+|.. .-+...+.....-+ + ++++++++.++++....+ ||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeEEehhhHhhcccccccCcEEEeehcc
Confidence 589999999999988887743 33469999998 45555555555543 3 469999999999875444 9999997554
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. +..+..-+..++|+||.++
T Consensus 146 ~-------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 146 S-------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred c-------hHHHHHHHHHhcccCCcch
Confidence 3 4666777889999999875
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2.3e-05 Score=79.83 Aligned_cols=117 Identities=26% Similarity=0.290 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
.+...+.+......++.+||+.||||.+++.+|+ ++++|+|||+++ .+..|++++..|+ . .+.+|+.|-.+++-.
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ng-i-sNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQING-I-SNATFIVGQAEDLFPS 446 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcC-c-cceeeeecchhhccch
Confidence 3445566777777789999999999999999987 577899999995 7799999999997 4 579999997777521
Q ss_pred ---C--Ccee-EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 128 ---P--EKAD-ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 128 ---~--~~fD-vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
+ ++-+ ++|.+++-..+ -..++.++.++-++--.++.+ ++.+.
T Consensus 447 l~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~rlvyvS-Cn~~t 494 (534)
T KOG2187|consen 447 LLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPRRLVYVS-CNPHT 494 (534)
T ss_pred hcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCccceEEEE-cCHHH
Confidence 1 2345 66777765443 244555555544454444443 44443
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.04 E-value=1.8e-05 Score=76.97 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
+.+++.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ ++++.|++++.. .++++++++++.++. +
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHHHHH
Confidence 445556655678899999999999999999884 3689999999 588999887654 258999999998763 2
Q ss_pred CC---ceeEEEEcC
Q 015038 128 PE---KADILISEP 138 (414)
Q Consensus 128 ~~---~fDvIis~~ 138 (414)
++ ++|.|++++
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 22 799999864
No 220
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.04 E-value=7.7e-05 Score=71.42 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh----CC----------------------------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG----NP---------------------------- 109 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~----n~---------------------------- 109 (414)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.+.. +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 346899999999999999999999 59999999 576433332221 00
Q ss_pred ------CCCCcEEEEEcccccccCC----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 110 ------SLGERITVIKGKVEEVELP----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 110 ------~l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
....++....||+.++-.+ ++||+|++. .++.....+-.+++.+.++|||||..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEE
Confidence 0123566677777776433 489999975 45555555788899999999999954
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=5.5e-05 Score=71.34 Aligned_cols=104 Identities=27% Similarity=0.280 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
..|...+...+|.+|||-|+|+|.++.+++++ .-.+++.+|..+ .++.|++-++..+ +++++++.+-|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccc
Confidence 55677778889999999999999999999997 335999999985 7899999999998 999999999999776443
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeE
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
.++|.|+.+.+.-+. . +--+.+.||.+|.
T Consensus 174 ks~~aDaVFLDlPaPw~-------A-iPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPWE-------A-IPHAAKILKDEGG 204 (314)
T ss_pred cccccceEEEcCCChhh-------h-hhhhHHHhhhcCc
Confidence 579999987654332 1 2223447787774
No 222
>PRK10742 putative methyltransferase; Provisional
Probab=97.99 E-value=5.7e-05 Score=71.17 Aligned_cols=89 Identities=22% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCC--EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC------CC-CCCcEEEEEcccc
Q 015038 54 AVIENRADFIGR--VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN------PS-LGERITVIKGKVE 123 (414)
Q Consensus 54 ai~~~~~~~~~~--~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n------~~-l~~~i~vi~~d~~ 123 (414)
.|.+.....++. +|||+-+|+|..++.++..|++ |+++|.++ ++...+.++... +. +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 445555555666 8999999999999999999996 99999996 556666666542 11 2257999999998
Q ss_pred ccc--CCCceeEEEEcCCcccc
Q 015038 124 EVE--LPEKADILISEPMGTLL 143 (414)
Q Consensus 124 ~~~--~~~~fDvIis~~~~~~l 143 (414)
++- .+..||+|+.+||...-
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCCC
Confidence 763 33579999999997653
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.98 E-value=4.3e-05 Score=75.03 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~ 140 (414)
.+++++|||||++|.++..+++.|+ +|+|||..+|.... .. ..+|+.+.+|...+.. .+.+|+++|+...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD----TGQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC----CCCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 5788999999999999999999998 79999987765332 22 2479999998877765 5789999997542
Q ss_pred cccCChhhHHHHHHHHHhccCCC
Q 015038 141 TLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
. +..+.+-+.+||..|
T Consensus 281 ~-------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 K-------PARVAELMAQWLVNG 296 (357)
T ss_pred C-------HHHHHHHHHHHHhcC
Confidence 2 455556667788765
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.96 E-value=4.9e-05 Score=70.17 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=70.5
Q ss_pred EEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcccc
Q 015038 67 VVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLL 143 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l 143 (414)
|.||||--|.+++.+++.|. .+++++|+++ -++.|++++...+ +.++|+++.+|..+.-.+ +..|.|+...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 68999999999999999975 5899999995 7899999999987 899999999997664333 348998876665432
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
...++.+....++....++ +.|.....
T Consensus 80 -----I~~ILe~~~~~~~~~~~lI-------LqP~~~~~ 106 (205)
T PF04816_consen 80 -----IIEILEAGPEKLSSAKRLI-------LQPNTHAY 106 (205)
T ss_dssp -----HHHHHHHTGGGGTT--EEE-------EEESS-HH
T ss_pred -----HHHHHHhhHHHhccCCeEE-------EeCCCChH
Confidence 5566666666665544554 45655543
No 225
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.94 E-value=4.9e-05 Score=79.67 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fDvIis~ 137 (414)
.+..+||||||.|.+...+|+. .-..++|+|+. +.+..|.+.+...+ + .|+.++..|+..+. .++++|.|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-I-TNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-C-CeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4678999999999998888887 44579999998 55555555555554 4 46888888875442 23679999987
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.-+.-.. -.-..++..+.+.|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 765442211 11257788889999999998654
No 226
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.94 E-value=4.3e-05 Score=73.25 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=74.8
Q ss_pred CCEEEEECCCcc----HHHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHh-----CC------------------
Q 015038 64 GRVVVDVGAGSG----ILSLFAAQAG------AKHVYAVEAS-EMAEYARKLIAG-----NP------------------ 109 (414)
Q Consensus 64 ~~~VLDiGcGtG----~ls~~~a~~g------~~~V~gvD~s-~~~~~a~~~~~~-----n~------------------ 109 (414)
.-+|+-+||+|| .+++.+.+.+ .-+|+|.|+| ..++.|+.-+-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 4566666653 2389999999 577877653211 00
Q ss_pred ----CCCCcEEEEEccccccc-CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 110 ----SLGERITVIKGKVEEVE-LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 110 ----~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+...|.|-..|+.+-. ..+.||+|+|-.+..++. +..-..++...+..|+|||.+++...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 01234566666666554 557899999976665554 45567888999999999999987543
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.92 E-value=1.8e-05 Score=71.44 Aligned_cols=95 Identities=28% Similarity=0.398 Sum_probs=60.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C---CC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L---PE 129 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~---~~ 129 (414)
++.+|||+||++|.++..+++.+ ..+|+|+|+.++. ....+..+.+|+.+.. + .+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999999997 5689999998651 1134666677765431 1 15
Q ss_pred ceeEEEEcCCccc----cCCh----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTL----LVNE----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~----l~~e----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++|+|+|+..... ..++ ......+..+.++|+|||.++.-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8999999863111 1111 11233344556789999987653
No 228
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.91 E-value=7.8e-05 Score=72.32 Aligned_cols=95 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCC-----CCEEEEECCCcc-HHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 50 TYYAAVIENRADFI-----GRVVVDVGAGSG-ILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 50 ~~~~ai~~~~~~~~-----~~~VLDiGcGtG-~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
.|...|...+.... .-++||||||.. +..+..++. |. +++|.|+++ .++.|++++..|..+.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 44455555443322 348999999975 666666665 54 799999995 8899999999994499999998764
Q ss_pred ccc-c----c-CCCceeEEEEcCCccccCC
Q 015038 122 VEE-V----E-LPEKADILISEPMGTLLVN 145 (414)
Q Consensus 122 ~~~-~----~-~~~~fDvIis~~~~~~l~~ 145 (414)
-.. + . ..+.||+.+|||+++--..
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred CccccchhhhcccceeeEEecCCccccChh
Confidence 322 1 1 1268999999999875443
No 229
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.91 E-value=0.00014 Score=70.39 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+......+.+.+|||+|||.|.-...+... ...+++++|.| .|++.++..+.... .............+...-
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-ccccchhhhhhhcccccC
Confidence 344444556788899999999999766555443 45689999999 58898888776543 111111111111111111
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
...|+|++.....-+.+ .....+++.+.+.+++ -.+++..++
T Consensus 101 ~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 23499998666555655 5567777877777766 333333333
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00013 Score=73.05 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=88.5
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCC---CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGA---KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE---LP- 128 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~---~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~- 128 (414)
..+...+|.+|||++++.|.=+..+++... ..|+|+|.++ -+...+++++..| .. ++.+++.|...+. ..
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~-nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VR-NVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-ceEEEeccccccccccccc
Confidence 345667889999999999998888887732 3579999994 7788888888876 43 3778888776542 12
Q ss_pred CceeEEEEcCCccc--cC----------Chh-------hHHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 129 EKADILISEPMGTL--LV----------NER-------MLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 129 ~~fDvIis~~~~~~--l~----------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
++||.|+.+.+-+. .. ... .-..+|..+.++|||||.++-+.|++. |.+.+..
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~--~eENE~v 299 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT--PEENEEV 299 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc--hhcCHHH
Confidence 36999998877332 11 011 124778889999999999999988844 4444443
No 231
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.87 E-value=9.4e-05 Score=78.07 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcC---------CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG---------AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g---------~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
...+|||.|||+|.+...+++.. ...++|+|+++ .+..|+.++...+ ...+.+..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CCCceeeeccccccccccccc
Confidence 45689999999999988887642 14789999995 7788888876643 123556655543321
Q ss_pred CCCceeEEEEcCCccc
Q 015038 127 LPEKADILISEPMGTL 142 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~ 142 (414)
..++||+||+||+...
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 1258999999998543
No 232
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.79 E-value=0.00014 Score=71.25 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=84.3
Q ss_pred CCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHH--H---hCCCCCCcEEEEEcccccccC--CCceeEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLI--A---GNPSLGERITVIKGKVEEVEL--PEKADIL 134 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~--~---~n~~l~~~i~vi~~d~~~~~~--~~~fDvI 134 (414)
..+||-+|.|.|.-...+.+.. ..+|+-||.++ |++.++++. + .+..-+.|++++..|+..+-. .++||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 3589999999999999999985 78999999995 998887432 2 222124689999999988732 3689999
Q ss_pred EEcCCccccCChh--hHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 135 ISEPMGTLLVNER--MLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 135 is~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
|.+.+..--+.-. .-..+..-+.|.|+++|.++.+.++.|..|
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 9876543211111 124555667899999999999988877655
No 233
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.78 E-value=0.00016 Score=70.76 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=76.1
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLL 143 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l 143 (414)
...+|+|.|.|..+..+... ..+|-+++.+ +.+..++.... . .|+.+.+|+..- .| +-|+|+.-|+.|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence 58899999999999888884 5569999998 55544444432 2 288888888775 44 56799999999998
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++. ...+|+++++.|+|||.+++-..
T Consensus 250 tDed-cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDED-CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHH-HHHHHHHHHHhCCCCCEEEEEec
Confidence 8766 77899999999999999876544
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.76 E-value=0.00025 Score=68.18 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCEEEEECCCcc-HHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 64 GRVVVDVGAGSG-ILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG-~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
+++|+=||||.= ..++.+++. + ...|+++|+++ .++.+++.+....+++.+++++.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999974 445566654 3 23699999995 67888888873333788999999999877543 5899998643
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+-.. ....-..++..+.+.++||+.++..
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 3211 1223578889999999999998755
No 235
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.75 E-value=0.00039 Score=58.14 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=65.2
Q ss_pred EEEECCCccHHHHHHHHcCC--CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc--ccCCC--ceeEEEEcCC
Q 015038 67 VVDVGAGSGILSLFAAQAGA--KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE--VELPE--KADILISEPM 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~--~~~~~--~fDvIis~~~ 139 (414)
++|+|||+|... .++.... ..++++|.++ ++..++..... ... ..+.++.++... .+... .+|++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-GLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-CceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999977 4444332 3799999994 66664444322 111 116788888776 45554 7999944333
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.++. . ....+..+.+.|+|+|.++.....
T Consensus 129 ~~~~-~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLL-P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcC-C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 2222 2 577788889999999998766543
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00018 Score=65.91 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------CC-Cc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------LP-EK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~~-~~ 130 (414)
.++.+|+|+||-.|.++..+++. +. .+|+|+|+.+|- .-.+|.++++|+++-+ ++ .+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 45689999999999999999987 32 259999998752 2234999999998753 12 35
Q ss_pred eeEEEEcCCc----cccCCh----hhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMG----TLLVNE----RMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~----~~l~~e----~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+|+|++.- +...++ ......+.-+..+|+|||.++.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999997642 221111 1134455667789999999864
No 237
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.73 E-value=2.9e-05 Score=79.18 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCC--CCC--CEEEEECCCccHHHHHHHHcCCCeEEEEeCh---H-HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 49 GTYYAAVIENRAD--FIG--RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS---E-MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 49 ~~~~~ai~~~~~~--~~~--~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s---~-~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
..|.+.|.+.+.. ..+ .++||+|||+|.++..+...+.. +..+-.+ + .+..|.++ | +..-+.++
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleR----G-vpa~~~~~-- 170 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALER----G-VPAMIGVL-- 170 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhc----C-cchhhhhh--
Confidence 3566666666544 222 37899999999999999988763 4444333 1 23333332 2 22212111
Q ss_pred ccccccCC-CceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 121 KVEEVELP-EKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 121 d~~~~~~~-~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
-...++.+ ..||+|.|.-... ...+. ..+|-++.|+|+|||.++.+...++
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCCccc
Confidence 12345555 6899999843222 22222 3467788999999999998877776
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.70 E-value=2.5e-05 Score=64.04 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred EEECCCccHHHHHHHHc----CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-CceeEEEEcCCc
Q 015038 68 VDVGAGSGILSLFAAQA----GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-EKADILISEPMG 140 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~----g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-~~fDvIis~~~~ 140 (414)
||||+..|..+..++++ +..+++++|..+..+.+++.+++.+ +..+++++.++..+. ..+ +++|+|+.+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999888777764 2237999999864444455554433 667899999999765 223 689999976422
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .......+..+.+.|+|||++++.
T Consensus 80 ~----~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 S----YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 1 122445567788999999999875
No 239
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.70 E-value=0.00054 Score=63.34 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=74.0
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..+.++|..- ....+|.+||-+|+.+|.....++.. | ...|||||.|+ ..+..-...++. .||--+-+|+
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DA 131 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDA 131 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-T
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccC
Confidence 3455556543 34567899999999999998888875 4 45899999995 333333333332 4688888898
Q ss_pred cccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.... +-+.+|+|+++.. ...+.+-++.++..+||+||.+++..
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 7642 2268999998643 23446777888889999999987653
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.69 E-value=0.0002 Score=62.16 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=56.0
Q ss_pred CCCCEEEEECCCccHHHHHHHH-----cCCCeEEEEeCh-HHHHHHHHHHHhCC-CCCCcEEEEEcccccccCCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQ-----AGAKHVYAVEAS-EMAEYARKLIAGNP-SLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~-----~g~~~V~gvD~s-~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+...|+|+|||.|.|+..++. ....+|+|||.+ ...+.+.++.+..+ .+..++.+..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5667999999999999999998 544589999999 47777777766542 1235677777777665445667788
Q ss_pred EE
Q 015038 135 IS 136 (414)
Q Consensus 135 is 136 (414)
++
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.67 E-value=0.00038 Score=67.65 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=84.2
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCcee
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKAD 132 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fD 132 (414)
+...++..|||+++|.|.-+..++.. +...|+|+|++ .-+...+.++...| . .++.++..|..... ....||
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~-~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-V-FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-C-ceEEEEeeccccccccccccccc
Confidence 45568889999999999998888876 24689999999 57777788888765 3 46788878887762 234699
Q ss_pred EEEEcCCcccc----CCh--------hh-------HHHHHHHHHhcc----CCCeEEEccccee
Q 015038 133 ILISEPMGTLL----VNE--------RM-------LETYVIARDRFL----VPMGKMFPSVGRI 173 (414)
Q Consensus 133 vIis~~~~~~l----~~e--------~~-------l~~~l~~~~r~L----kpgG~lip~~~~~ 173 (414)
.|+.+.+-+.. .+. .. -..+++.+.+++ ||||+++-+.|++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99998773322 111 11 246788889999 9999999888773
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00015 Score=62.53 Aligned_cols=57 Identities=33% Similarity=0.423 Sum_probs=48.1
Q ss_pred EEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
+|||+|||.|..+..+++.+.. +|+++|+++ +.+.++++++.|+ +. ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeeeeC
Confidence 4899999999999999988654 899999995 8899999998876 43 58888877765
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.62 E-value=4.6e-05 Score=69.72 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCC-CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADF-IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~-~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+....+|....... ...+|+|.-||.|..++..|..|. .|++||+++ -+..|+.+++-.| ..++|++++||+.++-
T Consensus 79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLA 156 (263)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHH
Confidence 33444444433222 556899999999988888887777 699999996 7799999999887 7889999999998863
Q ss_pred ----CC-CceeEEEEcCC
Q 015038 127 ----LP-EKADILISEPM 139 (414)
Q Consensus 127 ----~~-~~fDvIis~~~ 139 (414)
.. ..+|+|+..++
T Consensus 157 ~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 157 SKLKADKIKYDCVFLSPP 174 (263)
T ss_pred HHHhhhhheeeeeecCCC
Confidence 22 45778886655
No 244
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.55 E-value=0.0002 Score=68.16 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCC--------------------------CCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPS--------------------------LGE 113 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~--------------------------l~~ 113 (414)
..++.++||||||.-+.....|..-+++|+..|..+ ..+..++.+++.+. +..
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456789999999997776555555567899999974 55554544433211 011
Q ss_pred cE-EEEEccccccc-------CCCceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 114 RI-TVIKGKVEEVE-------LPEKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 ~i-~vi~~d~~~~~-------~~~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.| .++.+|+.+.+ +|.+||+|++..... ...+.......++.+.++|||||.++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 23 37778887643 234699999865433 2335566778889999999999999754
No 245
>PHA01634 hypothetical protein
Probab=97.46 E-value=0.00046 Score=57.95 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
+.++++|+|||++.|.-++.++-.||++|+++|+++ +.+..+++.+.+. .-++..... +++.. +.||+.+.+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn-I~DK~v~~~----eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN-ICDKAVMKG----EWNGEYEDVDIFVMDC 100 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe-eeeceeecc----cccccCCCcceEEEEc
Confidence 468999999999999999999999999999999996 7788888877664 323222221 23222 6789888643
No 246
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.44 E-value=0.0028 Score=62.48 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C-CCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEcccccc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G-AKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEV 125 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~ 125 (414)
..|.+.+ .++..++|+|||+|.-+..+.++ + ..++++||+| ++++.+.+.+.... .. -.+.-+.+|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEEecHHHH
Confidence 4444444 34568999999999765554443 1 3479999999 68888888776221 22 2344488888653
Q ss_pred ----cC---CCceeEEEEcCCccccCC--hhhHHHHHHHHHh-ccCCCeEEEccc
Q 015038 126 ----EL---PEKADILISEPMGTLLVN--ERMLETYVIARDR-FLVPMGKMFPSV 170 (414)
Q Consensus 126 ----~~---~~~fDvIis~~~~~~l~~--e~~l~~~l~~~~r-~LkpgG~lip~~ 170 (414)
+. +....+++. +|+.+.| ......+++.+.+ .|+|||.+++..
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 11 133566665 4443333 3345678899988 999999988643
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00095 Score=61.09 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-CceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-EKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-~~fDvIis~ 137 (414)
.++.+||+||-|-|+..-++.++...+-+.||..+ .++..+...-. -.++|.++.+-.++.- ++ +.||-|+-+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhhccccccCcceeEee
Confidence 68899999999999999999888777788999985 66655554222 2367888888877763 23 579999976
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..+.+ -+.+..+.+.+.|+|||+|++-
T Consensus 177 Ty~e~---yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 177 TYSEL---YEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred chhhH---HHHHHHHHHHHhhhcCCCceEE
Confidence 54333 2236667778889999999983
No 248
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00013 Score=63.76 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCC-CCCcEEEEEccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPS-LGERITVIKGKVEE 124 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~-l~~~i~vi~~d~~~ 124 (414)
+++...+++......++.||++|.|- |.-++++|.. ..+.|...|-++ .++..++....|.. -..++.++.-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 33444455555556678999999995 7777777654 556899999994 66777776655520 11233333333222
Q ss_pred c---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 125 V---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 125 ~---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
- .....||+|++. .+++-.+..+.+.+.+.++|+|.|..+ ..+|-....+
T Consensus 95 aqsq~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al------~fsPRRg~sL 147 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL------LFSPRRGQSL 147 (201)
T ss_pred hHHHHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee------EecCcccchH
Confidence 1 122589999983 233334447889999999999999853 3455544433
No 249
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.25 E-value=0.0013 Score=66.47 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCC-cEEEEEccccccc--CCCceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGE-RITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~-~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
+-+|||.=+|+|+=++..+.. +..+|++-|+|+ .++..++|++.|+ +.+ ++++.+.|+..+- ..+.||+|=.+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 458999999999999888876 678999999995 7799999999998 776 7999999988764 45789999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
|+|+- ..+++.+.+.++.||.+.++...
T Consensus 129 PfGSp-------~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 PFGSP-------APFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CCCCc-------cHhHHHHHHHhhcCCEEEEeccc
Confidence 87763 55677778889999999876543
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0028 Score=57.55 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=78.0
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
..+.++|+.- .+..++.+||=+|+-+|......+.. |...+||||.|+ +....-..+.+. .||--+.+|+.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~ 134 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDAR 134 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccC
Confidence 4455566553 34567899999999999988888875 656799999983 333222222221 35777888887
Q ss_pred ccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 124 EVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 124 ~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
... +-+.+|+|+.+. ....+.+-+..++..+||+||.+++..
T Consensus 135 ~P~~Y~~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CcHHhhhhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 642 126799999853 234456777888999999999776653
No 251
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.21 E-value=0.00058 Score=68.34 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
+++..++|+|||.|......+..+..+++|++.++ .+..+........ +.++..++.+|+...+.+ ..||.+-+.-.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 45668999999999999999988766899999984 4444444333332 555566677888777665 57999988655
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+..+ +..++.++.|.+||||.++..
T Consensus 188 ~~~~~~---~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 VCHAPD---LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCCc---HHHHHHHHhcccCCCceEEeH
Confidence 666555 788889999999999998643
No 252
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.20 E-value=0.0011 Score=61.09 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEEEcCCc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILISEPMG 140 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~ 140 (414)
-++|||||=+...... ..+.-.|+.||+++ ..-.+.+.|+.+.++| ++||+|++.++.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 5899999976544322 23444699999974 1124677888887654 689999999999
Q ss_pred cccCChhhHHHHHHHHHhccCCCeE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
.+++.......++..+.++|+|+|.
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 9999988888999999999999999
No 253
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0019 Score=55.73 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
++..+...+..+.+|+|+|.|...+.+++.|...-+|+|+++ .+.+++-..-..+ ...+..+...|+.++++..-=.+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~RkdlwK~dl~dy~~v 142 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRRKDLWKVDLRDYRNV 142 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhhhhhhhccccccceE
Confidence 344454455568999999999999999999988899999998 5577777666665 77889999999988776532223
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|. .-|+++..+-.++..-|..|..++-..
T Consensus 143 viF-------gaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 143 VIF-------GAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred EEe-------ehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 331 124445555556655677777776443
No 254
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.16 E-value=0.0034 Score=59.94 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCCCC-CEEEEECCCc--cHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIENRADFIG-RVVVDVGAGS--GILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~-~~VLDiGcGt--G~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..|.....+.+....| ...||||||- -.....+|+. ...+|+-||.++ .+..++..+..+. ..+..++.+|+
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~ 130 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--T
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCC
Confidence 3444444444433323 5799999994 3345666654 445899999998 5588888887764 23589999999
Q ss_pred cccc-------------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 123 EEVE-------------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 123 ~~~~-------------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+.. +.+.+ .++...+.|++.++..+..++..+...|.||..++++..+
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 8752 11233 3444556788888778999999999999999999887554
No 255
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00038 Score=66.36 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=73.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
.+..++|+|||.|-.... .....++|+|++ ..+..|++. + ...+..+|+..++.+ ..||.+++-.+.
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~---~-----~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS---G-----GDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC---C-----CceeehhhhhcCCCCCCccccchhhhhh
Confidence 478999999999865321 133368999998 466655542 1 125777888887765 689999998899
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|++........+++++.|.|+|||.+.+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 9998888788999999999999998754
No 256
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0011 Score=64.73 Aligned_cols=130 Identities=19% Similarity=0.158 Sum_probs=74.0
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEE
Q 015038 39 QNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERIT 116 (414)
Q Consensus 39 ~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~ 116 (414)
..|...+..-..-...+.....++..+++||+|.|.|.-...+-.. ..+.++.+|.|+.+...-.-+..|- ...+..
T Consensus 89 s~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-~t~~td 167 (484)
T COG5459 89 SRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-STEKTD 167 (484)
T ss_pred HhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-ccccCC
Confidence 3444444333333445555567888899999999998765554443 2346888999986655444444442 222223
Q ss_pred EEEccccc----ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 117 VIKGKVEE----VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 117 vi~~d~~~----~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+.. ++..+.|++++..--.-...++..+...++.+..++.|||.+++.
T Consensus 168 ~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 168 WRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred CCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 33333332 222256777764111111123443555778888999999998764
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.09 E-value=0.006 Score=56.27 Aligned_cols=93 Identities=26% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~fDvIis~~~ 139 (414)
.+.++.||||--|.|+..+.+.+ +..+++.|+++ -++.|.+++.+++ +.+++++..+|.... ...+.+|+|+...|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 34559999999999999999874 56899999995 7899999999997 899999999998554 33358999998777
Q ss_pred ccccCChhhHHHHHHHHHhccC
Q 015038 140 GTLLVNERMLETYVIARDRFLV 161 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~Lk 161 (414)
|..+ +..++.+..+.|+
T Consensus 95 GG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 95 GGTL-----IREILEEGKEKLK 111 (226)
T ss_pred cHHH-----HHHHHHHhhhhhc
Confidence 6543 4555555555555
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.06 E-value=0.013 Score=54.95 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.+++....+..|++||-+|-+. ..|+.+|.. ..++|+.+|+++ +++..++.+++.+ + +|+.+..|+++--+
T Consensus 31 ~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l--~i~~~~~DlR~~LP 106 (243)
T PF01861_consen 31 LRRAALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-L--PIEAVHYDLRDPLP 106 (243)
T ss_dssp HHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---
T ss_pred HHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-C--ceEEEEecccccCC
Confidence 3345555666678899999999776 445555543 456899999995 8888888888765 4 39999999987422
Q ss_pred ---CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCe-EEEc
Q 015038 128 ---PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMG-KMFP 168 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~lip 168 (414)
.++||+++++|+... ..+.-++......||..| ..++
T Consensus 107 ~~~~~~fD~f~TDPPyT~----~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 107 EELRGKFDVFFTDPPYTP----EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp TTTSS-BSEEEE---SSH----HHHHHHHHHHHHTB-STT-EEEE
T ss_pred HHHhcCCCEEEeCCCCCH----HHHHHHHHHHHHHhCCCCceEEE
Confidence 278999999998654 236777777778888666 4443
No 259
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.89 E-value=0.00034 Score=66.94 Aligned_cols=95 Identities=29% Similarity=0.347 Sum_probs=73.4
Q ss_pred CCCEEEEECCCccHHHH-HHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSL-FAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~-~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.+.+|+|+-+|-|.+++ ++..+||+.|+|+|.++ .++..+++++.|+ ..++..++.+|-+...+....|-|...++-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R~~~~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNRNPKPRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhccccccCccccchheeecccc
Confidence 34789999999999999 89999999999999996 7788899999887 778888999998887777788888853322
Q ss_pred cccCChhhHHHHHHHHHhccCCCeE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
+ .+..... +.+.|||.|-
T Consensus 273 S---se~~W~~----A~k~Lk~egg 290 (351)
T KOG1227|consen 273 S---SEQGWPT----AIKALKPEGG 290 (351)
T ss_pred c---cccchHH----HHHHhhhcCC
Confidence 2 2222332 3366777665
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.87 E-value=0.0058 Score=52.72 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=56.2
Q ss_pred eEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CC-ceeEEEEcCCccccCC-------hhhHHHHHHHH
Q 015038 88 HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PE-KADILISEPMGTLLVN-------ERMLETYVIAR 156 (414)
Q Consensus 88 ~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~-~fDvIis~~~~~~l~~-------e~~l~~~l~~~ 156 (414)
+|+|+|+- +.++.+++++.+.+ +.++++++..+-+.+.. ++ ++|+++.|+ |+.-.+ ...--..++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 69999998 57799999999987 77899999998877643 34 899999873 332211 11123445777
Q ss_pred HhccCCCeEEEcccce
Q 015038 157 DRFLVPMGKMFPSVGR 172 (414)
Q Consensus 157 ~r~LkpgG~lip~~~~ 172 (414)
.++|+|||++.+..+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 8899999999765443
No 261
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.80 E-value=0.0044 Score=58.14 Aligned_cols=87 Identities=26% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHhcCCCCC--CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HH---HHHHHHHHhCCCC----CCcEEEEEccccc
Q 015038 55 VIENRADFIG--RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MA---EYARKLIAGNPSL----GERITVIKGKVEE 124 (414)
Q Consensus 55 i~~~~~~~~~--~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~---~~a~~~~~~n~~l----~~~i~vi~~d~~~ 124 (414)
+.+.....++ .+|||.-+|-|.-++.+|..|+ +|+++|.|+ ++ ..+-++....... ..+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 4444443444 3899999999999999998887 599999997 33 3333344443212 1489999999988
Q ss_pred cc--CCCceeEEEEcCCccc
Q 015038 125 VE--LPEKADILISEPMGTL 142 (414)
Q Consensus 125 ~~--~~~~fDvIis~~~~~~ 142 (414)
+- ...+||+|..+||+..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 62 2368999999999765
No 262
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.79 E-value=0.0017 Score=63.41 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred HHHHhc-CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHH-------HHHHHHHhCCCCCCcEEEEEccccc
Q 015038 54 AVIENR-ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAE-------YARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 54 ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~-------~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+..+. ...+|+.|+|--.|||.+...+|.-|+ .|+|.|++ .++. -.+.+++..+..+.-+.++.+|...
T Consensus 198 li~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 198 LIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 344433 346789999999999999999999998 69999999 5554 2355666655333346778888876
Q ss_pred ccCC--CceeEEEEcCC
Q 015038 125 VELP--EKADILISEPM 139 (414)
Q Consensus 125 ~~~~--~~fDvIis~~~ 139 (414)
-... ..||.|||+|+
T Consensus 277 ~~~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVCDPP 293 (421)
T ss_pred cchhhcceeeEEEeCCC
Confidence 5432 58999999988
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.79 E-value=0.01 Score=59.46 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCcee
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKAD 132 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fD 132 (414)
+...++.+|||++|-.|.=+.++|.. +-..|+|.|.+ .-+...+.++...| . .+..+.+.|..+++ .+.+||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-V-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-C-CceEEEccCcccccccccCcccc
Confidence 45568899999999999777666654 44579999999 57777788887765 3 45667777887653 335899
Q ss_pred EEEEcCCccc--cCCh-----------------hhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 133 ILISEPMGTL--LVNE-----------------RMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 133 vIis~~~~~~--l~~e-----------------~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
-|+.+.+-+. +... ..-..++..+..++++||+++-+.|++-.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9998766443 2211 11246667777899999999998888543
No 264
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.77 E-value=0.0095 Score=58.24 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=64.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L- 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~- 127 (414)
+.+++.+...++..++|.=+|.|..+..+++. +..+|+|+|.++ ++..|++++.. ..+++++++++..++. +
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHHHHH
Confidence 44555565667889999999999999999886 446899999995 77888888765 3468999999988763 1
Q ss_pred --C-CceeEEEEcC
Q 015038 128 --P-EKADILISEP 138 (414)
Q Consensus 128 --~-~~fDvIis~~ 138 (414)
. .++|.|+.++
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 4699999864
No 265
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.018 Score=59.04 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=73.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHH-HHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYAR-KLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~-~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
-++|-+|||.-.++..+-+.|...|+.+|.|+.+ +... .+.+. ..-+.+...|+....++ ++||+|+-...+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 3899999999999999999999999999999633 3332 22222 23478888999888776 7999999866544
Q ss_pred ccC-Chh------hHHHHHHHHHhccCCCeEEE
Q 015038 142 LLV-NER------MLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 142 ~l~-~e~------~l~~~l~~~~r~LkpgG~li 167 (414)
.+. ++. .....+..+.|+|++||+.+
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 332 222 23456788899999999965
No 266
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0084 Score=57.95 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhcCCCC-------CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHH--HhCC-C-----
Q 015038 47 RTGTYYAAVIENRADFI-------GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLI--AGNP-S----- 110 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~-------~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~--~~n~-~----- 110 (414)
|...|...|.+.-..++ .-+||--|||.|.|+..++..|.+ +-|-|.|- |+-...-.+ .+.. .
T Consensus 127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 44455444444433333 347999999999999999999985 77888884 542222111 1100 0
Q ss_pred ------------------------------CCCcEEEEEcccccccCC----CceeEEEEcCCccccCChhhHHHHHHHH
Q 015038 111 ------------------------------LGERITVIKGKVEEVELP----EKADILISEPMGTLLVNERMLETYVIAR 156 (414)
Q Consensus 111 ------------------------------l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~ 156 (414)
..+...+..||+.++-.. +.+|+|+... ++......-.+++.+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~tI 282 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYIDTI 282 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHHHH
Confidence 001122233555544222 3699999753 344444466788999
Q ss_pred HhccCCCeEEE
Q 015038 157 DRFLVPMGKMF 167 (414)
Q Consensus 157 ~r~LkpgG~li 167 (414)
.+.|||||+.+
T Consensus 283 ~~iLk~GGvWi 293 (369)
T KOG2798|consen 283 YKILKPGGVWI 293 (369)
T ss_pred HHhccCCcEEE
Confidence 99999999874
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.59 E-value=0.0037 Score=56.41 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHH-----HHHHH-HhCCCCCCcEEEEEccccccc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEY-----ARKLI-AGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~-----a~~~~-~~n~~l~~~i~vi~~d~~~~~ 126 (414)
++......++.+|+|+=.|.|.++..++.. |+ ..||+.-..+.... .+.+. .... ...+++++-.+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCcccccC
Confidence 334455678899999999999999998876 43 37888766543211 11111 1111 2345666666666666
Q ss_pred CCCceeEEEEcCCccccC----ChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 LPEKADILISEPMGTLLV----NERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+++.|++..+...|-+. .......+..++.+.|||||++.+..+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 667888887654433222 2344678888999999999999877655
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.013 Score=53.80 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-----CCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-----GAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-----g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
+|...|-+. +++.|+|+|.-.|.-+++.|.. +..+|+|||++ . ....| .+..+ +..+|++++||.
T Consensus 23 ~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a---~e~hp-~~~rI~~i~Gds 94 (206)
T PF04989_consen 23 AYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA---IESHP-MSPRITFIQGDS 94 (206)
T ss_dssp HHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G---GGG-----TTEEEEES-S
T ss_pred HHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH---Hhhcc-ccCceEEEECCC
Confidence 354445443 6789999999998777666542 44689999996 3 22222 22333 668999999998
Q ss_pred ccccC---------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVEL---------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~~---------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+... +....+|+-+.- |. .+. ....|+....++++|+++++..
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~-H~--~~h-vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSS-HT--HEH-VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS-------SS-HHHHHHHHHHT--TT-EEEETS
T ss_pred CCHHHHHHHHHhhccCCceEEEECCC-cc--HHH-HHHHHHHhCccCCCCCEEEEEe
Confidence 76521 123446665432 21 122 3344466889999999987653
No 269
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.55 E-value=0.00092 Score=60.80 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
+.|++.+....+. ..+.++||+|+|.|-.+..++.. ..+|+|.|.| .|....+++ + ..++. .++-.
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk---~------ynVl~-~~ew~ 164 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK---N------YNVLT-EIEWL 164 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc---C------Cceee-ehhhh
Confidence 3444444433222 23479999999999999887764 4579999999 587655543 1 12221 11111
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCC-CeEEEccc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVP-MGKMFPSV 170 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp-gG~lip~~ 170 (414)
...-++|+|.|-.+..-.. .+-.+++.+...|+| +|.+|...
T Consensus 165 ~t~~k~dli~clNlLDRc~---~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 165 QTDVKLDLILCLNLLDRCF---DPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcCceeehHHHHHHHHhhc---ChHHHHHHHHHHhccCCCcEEEEE
Confidence 1224799999833222212 256778888889999 88887654
No 270
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.0097 Score=53.49 Aligned_cols=94 Identities=27% Similarity=0.393 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEc-cccccc--------CC-C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG-KVEEVE--------LP-E 129 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~--------~~-~ 129 (414)
.++.+|||+||..|.++..+.+. +...|.|||+-+.. ....++++.+ |+.+.. +| .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 46889999999999999998886 34579999985421 1123566666 666532 23 5
Q ss_pred ceeEEEEcCC----ccccCC-hhhH---HHHHHHHHhccCCCeEEE
Q 015038 130 KADILISEPM----GTLLVN-ERML---ETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 130 ~fDvIis~~~----~~~l~~-e~~l---~~~l~~~~r~LkpgG~li 167 (414)
++|+|+|+.. |.-+.+ .... .+++.-....++|+|.++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7999999753 211111 1111 223344456788999886
No 271
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.20 E-value=0.023 Score=53.83 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhC----CCCCCcEEEEEcccccc---c-CCCc-eeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGN----PSLGERITVIKGKVEEV---E-LPEK-ADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n----~~l~~~i~vi~~d~~~~---~-~~~~-fDv 133 (414)
+..+||++|+|+|.-++.+|..+...|..-|........+.+...| +.++..+.+..-+.... . .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 3568999999999999999886555788888875333332222221 11333444443333221 1 1123 899
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
|++.- .+..++..+.+...+..+|..+|.+
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCeE
Confidence 99743 3334455666777777888888844
No 272
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.12 E-value=0.0068 Score=58.00 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHH-------HHHHHH--hCCCCCCcEEEEEcccccccC--C
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEY-------ARKLIA--GNPSLGERITVIKGKVEEVEL--P 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~-------a~~~~~--~n~~l~~~i~vi~~d~~~~~~--~ 128 (414)
.+.+++|||+|||+|+.++.+...|+..+...|.| +.++. +...+. .+. ...-..+++.+..++.. .
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e-~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE-NHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhh-cccceeccccccccchhhhc
Confidence 46789999999999999999999987789998888 44311 011110 000 11123333332222221 1
Q ss_pred C--ceeEEEEcCCccccCChhhHHHH-HHHHHhccCCCeEEEc
Q 015038 129 E--KADILISEPMGTLLVNERMLETY-VIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 ~--~fDvIis~~~~~~l~~e~~l~~~-l~~~~r~LkpgG~lip 168 (414)
+ .||+|.+.-..+...+ ...+ ...+..+++++|+++.
T Consensus 193 ~~~~ydlIlsSetiy~~~~---~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDS---LAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccchhhhhhhhhhhCcch---hhhhHhhhhhhcCCccchhhh
Confidence 3 7888887544444333 3333 4556678899998753
No 273
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.96 E-value=0.044 Score=51.78 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
...+|+|||||.=.+++.+.... ...++|+|++ .+++.....+... ....++...|...-.+++..|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l---~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL---GVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT---T-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh---CCCcceeEeeeeccCCCCCcchhhH
Confidence 36799999999998888766542 2389999999 5888888877764 3456777778877666688999986
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.93 E-value=0.022 Score=55.08 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCC
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPM 139 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~ 139 (414)
+|+|+.||.|.++..+.++|.+.|+++|+++ .++..+.+.. . .++.+|+.++.. ...+|+++..++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~------~--~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP------N--KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC------C--CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6899999999999999999998999999996 4455454432 1 266778877653 357999998876
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.81 E-value=0.055 Score=54.19 Aligned_cols=94 Identities=28% Similarity=0.299 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc-c----ccccCCCceeE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK-V----EEVELPEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d-~----~~~~~~~~fDv 133 (414)
.++.+|+-+|||. |+++..+++. |+++|+++|.+ .-++.|++.... +.+.....+ . .+......+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 4455999999998 9998888776 88999999998 477888774321 111111111 1 11111236999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++= ..+ . ...+..+.+.++|+|.+..-
T Consensus 242 vie-~~G----~----~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 242 VIE-AVG----S----PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEE-CCC----C----HHHHHHHHHHhcCCCEEEEE
Confidence 983 223 1 23445566889999998643
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.77 E-value=0.095 Score=54.93 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
....+.|.+.+...+..+|+|..||+|.+...+++. + ...++|.|++ .....|+.++--++ ....+....+|.
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~dt 250 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGDT 250 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCcccccccccc
Confidence 344556666665556679999999999887766654 2 2469999998 58889998887765 433455555554
Q ss_pred cccc------CCCceeEEEEcCCcc
Q 015038 123 EEVE------LPEKADILISEPMGT 141 (414)
Q Consensus 123 ~~~~------~~~~fDvIis~~~~~ 141 (414)
..-+ ..++||.|+++|+..
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCC
Confidence 3322 125799999999864
No 277
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.034 Score=55.16 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEPM 139 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~ 139 (414)
..+|||.-+|||+=++.++.. +..+|+.-|+|+ ..+.+++|++.|. ..+..+++.|+..+-. ...||+|=.+|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~--~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS--GEDAEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC--cccceeecchHHHHHHhcCCCccEEecCCC
Confidence 789999999999999888875 555899999996 7799999999883 3457777788766533 378999998888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+-. .+++++.+.++.||++-++..
T Consensus 131 GSPa-------PFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 131 GSPA-------PFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCc-------hHHHHHHHHhhcCCEEEEEec
Confidence 7753 455666778888999876643
No 278
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.62 E-value=0.018 Score=59.17 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=64.0
Q ss_pred CEEEEECCCccHHHHHHHHcCCC--eEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCCcc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAK--HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPMGT 141 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~--~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~~ 141 (414)
.+|+|..+|.|.++..+...+.- .|+-+...+.+. .+-..| + |-+.+.=.+.+. .|..||+|.++.+.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~----vIydRG-L---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLP----VIYDRG-L---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcch----hhhhcc-c---chhccchhhccCCCCcchhheehhhhhh
Confidence 58999999999999888776431 122221111111 111112 2 223332233332 468999999988877
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
...+.-.++.++-++.|.|+|+|.+++...
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 766666688999999999999999987543
No 279
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.51 E-value=0.047 Score=51.05 Aligned_cols=105 Identities=22% Similarity=0.184 Sum_probs=65.7
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCce
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKA 131 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~f 131 (414)
++...++.+||=+|+++|......+.. |. .-|||||.|+-.-.-.-++++ -..+|.-|..|++... +-.-+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeeccCCCchheeeeeeeE
Confidence 455678999999999999887777765 32 369999998532111111111 1134556666766431 11368
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++..- ......+.-++..+||+||.++++.
T Consensus 228 DvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 228 DVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEEE
Confidence 999886432 2223444455678999999998764
No 280
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.17 Score=50.20 Aligned_cols=125 Identities=16% Similarity=0.043 Sum_probs=78.4
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCC---C--eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGA---K--HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~---~--~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
+...++.+|||+++-.|.=+..+.++.. . .|+|-|.+. -+......+..- ...++.+.+.++..++
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l--~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL--PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc--CCcceeeecccceecccccccc
Confidence 3456889999999999988877777622 2 799999973 333333333221 2344555555544332
Q ss_pred ----CCCceeEEEEcCCccc----cCC-----h-----------hhHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 127 ----LPEKADILISEPMGTL----LVN-----E-----------RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 127 ----~~~~fDvIis~~~~~~----l~~-----e-----------~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
....||-|+++.+-+. -.+ + ..--.++....++||+||.++-+.|+ +.|++.+.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEa 306 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEA 306 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHH
Confidence 1147999999766221 000 0 00124567778999999999998887 56888877
Q ss_pred hHHHH
Q 015038 183 LFVEI 187 (414)
Q Consensus 183 l~~e~ 187 (414)
...++
T Consensus 307 VV~~~ 311 (375)
T KOG2198|consen 307 VVQEA 311 (375)
T ss_pred HHHHH
Confidence 65443
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.47 E-value=0.049 Score=50.67 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=55.5
Q ss_pred CCCEEEEECCCccHH-HHHHH-HcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC------CCceeE
Q 015038 63 IGRVVVDVGAGSGIL-SLFAA-QAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL------PEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~l-s~~~a-~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------~~~fDv 133 (414)
++-++||||.|.-.. .+.=. ..|. +.+|.|+++ .+..|+.++..|+.+...|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 345789999986432 22211 2255 699999996 7799999999996688888877654333212 368999
Q ss_pred EEEcCCccc
Q 015038 134 LISEPMGTL 142 (414)
Q Consensus 134 Iis~~~~~~ 142 (414)
.+||+++|-
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999774
No 282
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.0087 Score=61.14 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--CC---CceeEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--LP---EKADIL 134 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~---~~fDvI 134 (414)
++-+|||.=|++|+-++..|+. |..+|++.|.++ .+...+++++.|+ ..+.++.-++|+.-+- .+ ..||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhccccccccceE
Confidence 3458999999999999999886 677899999995 7788899999886 7788888888876542 22 689999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
=.++.|+. ..+|+.+.+.++.||++..+.....
T Consensus 188 DLDPyGs~-------s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 DLDPYGSP-------SPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred ecCCCCCc-------cHHHHHHHHHhhcCCEEEEEecchH
Confidence 98887764 4567777788999999988765544
No 283
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.34 E-value=0.048 Score=49.72 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=44.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCC-----CCCCcEEEEEcccccc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNP-----SLGERITVIKGKVEEV 125 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~-----~l~~~i~vi~~d~~~~ 125 (414)
+.-.+.|||||-|.|.+.++... -.-+.|.|+- ...++.+.++.+.. +.-.++.+...+...+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 34568999999999999998773 3478999997 56677776665421 1234567776666554
No 284
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.045 Score=50.82 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=65.8
Q ss_pred CCCCC-CEEEEECCCccHHHHHHHHc--------CC--CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 60 ADFIG-RVVVDVGAGSGILSLFAAQA--------GA--KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 60 ~~~~~-~~VLDiGcGtG~ls~~~a~~--------g~--~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
..++| ++|+|+++..|.++..+++. +. +++++||+.+|+- + ..|.-+++|++...
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I-~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------I-EGVIQLQGDITSASTA 104 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------c-CceEEeecccCCHhHH
Confidence 33444 58999999999999888875 11 1499999988752 2 34788889998753
Q ss_pred ------C-CCceeEEEEcCC----ccccCChh----hHHHHHHHHHhccCCCeEEEc
Q 015038 127 ------L-PEKADILISEPM----GTLLVNER----MLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ------~-~~~fDvIis~~~----~~~l~~e~----~l~~~l~~~~r~LkpgG~lip 168 (414)
+ .++.|+|+|+.. |-|-.+|= .+...+.-...+|||||.++-
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 258999999753 22222221 233445556789999999863
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.07 E-value=0.35 Score=44.64 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHh-------------------------------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAG------------------------------- 107 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~------------------------------- 107 (414)
.+-.+.|-+||+|.+.-.+.-. ..+.|+|-|++ ++++.|++|+.-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4458999999999775544432 23589999999 588999887632
Q ss_pred ----------CCCCCCcEEEEEccccccc------CCCceeEEEEcCC-ccccCChh-----hHHHHHHHHHhccCCCeE
Q 015038 108 ----------NPSLGERITVIKGKVEEVE------LPEKADILISEPM-GTLLVNER-----MLETYVIARDRFLVPMGK 165 (414)
Q Consensus 108 ----------n~~l~~~i~vi~~d~~~~~------~~~~fDvIis~~~-~~~l~~e~-----~l~~~l~~~~r~LkpgG~ 165 (414)
.+ -.....+..+|+.+.. .....|+|+.+.+ +....+++ -...++..+...|-++++
T Consensus 131 A~RL~~~l~~~g-~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEG-GDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTT-SS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcC-CCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 11 1223677888887742 2345799999866 33333332 367888999999955555
Q ss_pred EEc
Q 015038 166 MFP 168 (414)
Q Consensus 166 lip 168 (414)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 286
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.06 E-value=0.15 Score=53.47 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
.++.+|+-+|||. |..++.+|+. |+ .|+++|.++ -++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4688999999997 8888888876 88 699999995 5566555
No 287
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.89 E-value=0.48 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHHHHHhccCCCeEEEccc
Q 015038 149 LETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 149 l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..+|+.+.+-|.|||.|++..
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHHHhccCcEEEEEE
Confidence 5678888899999999998653
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.44 E-value=0.088 Score=51.42 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-c-cccc----c--CC-
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-K-VEEV----E--LP- 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d-~~~~----~--~~- 128 (414)
..++.+||-+|+|. |.+++.+|++ |+++|+.+|++ +-++.|++ +... .+..... + ..++ . ..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-----VTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-----EEeeccccccHHHHHHHHHhhccc
Confidence 45788999999997 9999999998 99999999999 47788888 3221 1111111 1 1111 0 11
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+|+.+... . .+..++..-..+++||.++...
T Consensus 241 ~~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc---C------chHHHHHHHHHhccCCEEEEec
Confidence 3488888421 1 3344455567899999976543
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.25 E-value=0.2 Score=48.34 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHh--CCCCCCcEEEEEccccccc--C-CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAG--NPSLGERITVIKGKVEEVE--L-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~~--~-~~~fDvI 134 (414)
...++||-||.|.|......+++ ....+.-+|++. .++..++.+.. .+--+.+|.+.-||...+- . .++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45689999999999998888877 334788999985 55666665543 1212468999999876541 2 4789999
Q ss_pred EEcCCccccCChhh-HHHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+.-.-..+.+.. .+.++.-+.+.||+||+++...-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 97543322222222 35666778899999999876543
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.20 E-value=0.16 Score=49.77 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc----
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE---- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---- 126 (414)
+.+.+.+...++..++|.--|.|..+..+++. +..+|+|+|.++ +++.|++++.. ..+++.++++++.++.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GGGHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHHHHHHHHH
Confidence 34555566678889999999999999999986 447999999995 77788877654 3579999999988763
Q ss_pred -C--CCceeEEEEcC
Q 015038 127 -L--PEKADILISEP 138 (414)
Q Consensus 127 -~--~~~fDvIis~~ 138 (414)
. ..++|.|+.++
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 2 25799998754
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.20 E-value=0.25 Score=48.97 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEE
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis 136 (414)
..++.+||-.|||. |.++..+|++ |+++|+++|.++ .++.+++. + ...-+..-..++.++. ..+.+|+|+-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G-a~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G-ADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C-CcEEecCCcccHHHHhccCCCCCEEEE
Confidence 34688999999875 7777777776 777899999984 55665542 2 1110111111222211 1135899884
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+. ...+....+.|++||+++..
T Consensus 242 ~-~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 V-SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C-CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 2 221 12334455789999998754
No 292
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.19 E-value=0.085 Score=51.54 Aligned_cols=92 Identities=28% Similarity=0.342 Sum_probs=59.4
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChHH-HHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCCcc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEM-AEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPMGT 141 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~-~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~~~ 141 (414)
+++|+.||.|.+++.+.++|...|.++|+++. ++.-+.+. . .+..+|+.++.. ++.+|+++..++-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~------~---~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF------P---EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH------T---EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc------c---ccccccccccccccccccceEEEeccCCc
Confidence 69999999999999999999989999999964 34444442 2 788899988753 22599999877621
Q ss_pred c---------cCChh--hHHHHHHHHHhccCCCeEEE
Q 015038 142 L---------LVNER--MLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 142 ~---------l~~e~--~l~~~l~~~~r~LkpgG~li 167 (414)
. ..++. .+..+++.+ +.++|.-.++
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEE
T ss_pred eEeccccccccccccchhhHHHHHHH-hhccceEEEe
Confidence 1 11211 244555444 4568876554
No 293
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.08 E-value=0.32 Score=47.17 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
...+.+.+...++...+|.--|.|..+..+.... ..+++|+|.++ .++.|++++... .++++++++.+.++..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~---~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF---DGRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc---CCcEEEEeCcHHHHHHH
Confidence 3455667777888999999999999999988874 35799999995 789999988764 4799999998877631
Q ss_pred -----CCceeEEEEcC
Q 015038 128 -----PEKADILISEP 138 (414)
Q Consensus 128 -----~~~fDvIis~~ 138 (414)
.+++|-|+.++
T Consensus 89 l~~~~i~~vDGiL~DL 104 (314)
T COG0275 89 LKELGIGKVDGILLDL 104 (314)
T ss_pred HHhcCCCceeEEEEec
Confidence 15788888753
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=93.94 E-value=0.21 Score=48.47 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG 107 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~ 107 (414)
.+.+++... .+|..|||..||+|..++.+.+.|- +.+|+|++ +.++.|++++..
T Consensus 198 ~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 198 LKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 333444332 5789999999999999999998876 69999999 588999988754
No 295
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.75 E-value=0.4 Score=47.55 Aligned_cols=94 Identities=32% Similarity=0.267 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEECCC-ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc-ccccc-CCCceeE
Q 015038 59 RADFIGRVVVDVGAG-SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK-VEEVE-LPEKADI 133 (414)
Q Consensus 59 ~~~~~~~~VLDiGcG-tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d-~~~~~-~~~~fDv 133 (414)
....++++|+-+|+| .|.++..+|++ |+ +|+++|.|+ -++.|++.-. -.++... ....+ ..+.||+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA--------d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA--------DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC--------cEEEEcCCchhhHHhHhhCcE
Confidence 345678999999998 35778888884 75 799999994 6777777522 2344432 11111 1245999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+.... ...+ ....+.|++||.++..-.
T Consensus 233 ii~tv~------~~~~----~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG------PATL----EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC------hhhH----HHHHHHHhcCCEEEEECC
Confidence 996322 1113 334578999999976543
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.71 E-value=0.24 Score=50.10 Aligned_cols=103 Identities=20% Similarity=0.109 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccc--------cccC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE--------EVEL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~--------~~~~ 127 (414)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. + ..++...-. ++..
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~-----~~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G-----AETINFEEVDDVVEALRELTG 251 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C-----cEEEcCCcchHHHHHHHHHcC
Confidence 3445778999999987 8888888876 66579999998 4666666531 1 123322111 1111
Q ss_pred CCceeEEEEcCCccc------------cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTL------------LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~------------l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+-..-+.. +.........+..+.+.|+++|.++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 236999986321110 001111234556677899999998654
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.56 E-value=0.16 Score=41.64 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=27.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s 95 (414)
+....+|||||.|+|...+.+.|.. =+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP-GWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC-ccccccc
Confidence 4457999999999999999999884 7888874
No 298
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.53 E-value=0.81 Score=43.51 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHH---c-C--CCeEEEEeCh-----H------------------
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQ---A-G--AKHVYAVEAS-----E------------------ 96 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~---~-g--~~~V~gvD~s-----~------------------ 96 (414)
.|...+..++.......-+..|+|+||-.|..+++++. + + .+++++.|.= +
T Consensus 57 ~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~ 136 (248)
T PF05711_consen 57 ERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG 136 (248)
T ss_dssp HHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence 34455666666665444566899999999987765543 1 2 3578888741 0
Q ss_pred ----HHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 97 ----MAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 97 ----~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+..++++...+.+.+++.++.|.+.+--. .+++-++..+.= ..+. -...|..++..|.|||+++++
T Consensus 137 ~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D----lYes-T~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 137 YLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD----LYES-TKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp HCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEES
T ss_pred ccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEecc----chHH-HHHHHHHHHhhcCCCeEEEEe
Confidence 1123333444434345789999999876422 245544443211 1122 345668888999999999998
Q ss_pred ccee
Q 015038 170 VGRI 173 (414)
Q Consensus 170 ~~~~ 173 (414)
.+..
T Consensus 212 DY~~ 215 (248)
T PF05711_consen 212 DYGH 215 (248)
T ss_dssp STTT
T ss_pred CCCC
Confidence 7664
No 299
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.50 E-value=0.13 Score=50.77 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=48.7
Q ss_pred EEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcCC
Q 015038 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEPM 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~ 139 (414)
|+|+.||.|.+++-+.++|..-+.++|+++ .++.-+.+. .+ .++.+|+.++... ..+|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~------~~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF------GN--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC------CC--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999999998888999996 334444432 22 4556888887532 36899998766
No 300
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.24 E-value=0.26 Score=45.27 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHH
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~ 103 (414)
+.+.+++... .++..|||.-||+|..+.++.+.|- +.+|+|+++ .++.|++
T Consensus 180 l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3344444443 5688999999999999999999876 699999995 7777764
No 301
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.10 E-value=1 Score=43.20 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCC-CCCcEEEEEcccc
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS-LGERITVIKGKVE 123 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~-l~~~i~vi~~d~~ 123 (414)
..|+..+-+.+.+.+.. ....|+.+|||-=.-...+......+++=+|..++++.-++.+...+. ...+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 34555555555555433 234799999998666555432211245555555677766777765431 2467889999986
Q ss_pred c-cc--C------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 124 E-VE--L------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 124 ~-~~--~------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+ +. + +...-+++++.+..++. +.....++..+.+...||+.++++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 2 10 1 13455888888887775 445788999998888899999876433
No 302
>PRK13699 putative methylase; Provisional
Probab=93.07 E-value=0.38 Score=45.16 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG 107 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~ 107 (414)
.+.+++... .+|..|||.-||+|..+..+.+.|- +.+|+|+++ ..+.|.+++..
T Consensus 153 ~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 153 LQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 344444433 4788999999999999999998876 599999994 77888877765
No 303
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.11 E-value=0.37 Score=47.78 Aligned_cols=69 Identities=30% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC---C-ceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP---E-KADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~-~fDvIis~~ 138 (414)
..+++|+.||.|.+.+-+..+|..-+.++|+++.+ +.-+.+.. . ..++..|+.++... . .+|+|+..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~-~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------H-GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------C-CceeechHhhcChhhccccCCCEEEeCC
Confidence 35899999999999999999999889999999744 33333322 1 45667777766433 2 799999877
Q ss_pred C
Q 015038 139 M 139 (414)
Q Consensus 139 ~ 139 (414)
+
T Consensus 76 P 76 (328)
T COG0270 76 P 76 (328)
T ss_pred C
Confidence 6
No 304
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.07 E-value=0.2 Score=44.14 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=57.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHH-H-HHHHHHHHhCCCCCCcEEEE-Ecccc-cc-cCCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEM-A-EYARKLIAGNPSLGERITVI-KGKVE-EV-ELPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~-~-~~a~~~~~~n~~l~~~i~vi-~~d~~-~~-~~~~~fDvIis~~ 138 (414)
+++++-+|+..=..-..+.+.|+++|..||.++. + +. ..+++.-+ ..|.. ++ ...++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~----------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE----------FRDRLSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc----------cccccccccHHHHHHHHHHhhccchhhheec
Confidence 6789999999878888888889999999998751 1 11 11222211 11111 11 1236788887632
Q ss_pred C------cc---ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 M------GT---LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~------~~---~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. +. -+...+.+..+ .++.+.|||||.+++.
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m-~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAM-AKIKCVLKPGGLLFLG 110 (177)
T ss_pred hhccccccccCCCCCccccHHHH-HHHHHhhccCCeEEEE
Confidence 2 11 12223334444 6678999999999754
No 305
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.99 E-value=0.44 Score=51.92 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCEEEEECCCccHHHHHHHHc-------C------CCeEEEEeChHH----H-----------HHHHHHHHhCC----C
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-------G------AKHVYAVEASEM----A-----------EYARKLIAGNP----S 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-------g------~~~V~gvD~s~~----~-----------~~a~~~~~~n~----~ 110 (414)
+.-+|||+|=|+|...+.+.+. . .-+++++|..++ + ..+++.....+ +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876655421 1 128999997431 1 11222221110 0
Q ss_pred C------CC--cEEEEEccccccc--CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 111 L------GE--RITVIKGKVEEVE--LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 111 l------~~--~i~vi~~d~~~~~--~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+ .+ +++++.+|+.+.- +..++|+++.+.+.-.-..+---+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 11 4557778887642 23579999988765433333334678899999999999986
No 306
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.73 E-value=0.099 Score=52.68 Aligned_cols=62 Identities=31% Similarity=0.370 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCc-EEEEEcccccc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGER-ITVIKGKVEEV 125 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~-i~vi~~d~~~~ 125 (414)
.+|..|.|+.||.|.+++.+++.| ++|++-|.+ ++++..+.+++.|. .... |++.+.|+.++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHHHH
Confidence 467899999999999999999998 479999999 69999999999886 5554 99998887664
No 307
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.47 E-value=1.2 Score=46.45 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC--------------
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP-------------- 128 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-------------- 128 (414)
.-+++|+.||.|.+++-+-++|...|.++|+++.+ +.-+.+... .....++.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC----DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC----CCccceeccChhhCccccccccchhhhhhhh
Confidence 34899999999999999999998889999999644 333333211 12244556677665421
Q ss_pred ----CceeEEEEcCC
Q 015038 129 ----EKADILISEPM 139 (414)
Q Consensus 129 ----~~fDvIis~~~ 139 (414)
..+|+++..++
T Consensus 164 ~~~~p~~DvL~gGpP 178 (467)
T PRK10458 164 RQHIPDHDVLLAGFP 178 (467)
T ss_pred hccCCCCCEEEEcCC
Confidence 25899998766
No 308
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.28 E-value=1.6 Score=43.46 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc------------C-----CCeEEEEeCh--HHHHHHHH---H---HHhCCCCCCcEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA------------G-----AKHVYAVEAS--EMAEYARK---L---IAGNPSLGERITV 117 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~------------g-----~~~V~gvD~s--~~~~~a~~---~---~~~n~~l~~~i~v 117 (414)
+.-+|+|+||.+|..++.+... + .-+|+--|.- +.-...+. . ....+ .--+.-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~--~~f~~g 93 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR--NYFVSG 93 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT--SEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc--eEEEEe
Confidence 3458999999999998876632 1 0178888873 32222211 1 11111 011223
Q ss_pred EEcccccccCC-CceeEEEEcCCccccCC------------------------------------hhhHHHHHHHHHhcc
Q 015038 118 IKGKVEEVELP-EKADILISEPMGTLLVN------------------------------------ERMLETYVIARDRFL 160 (414)
Q Consensus 118 i~~d~~~~~~~-~~fDvIis~~~~~~l~~------------------------------------e~~l~~~l~~~~r~L 160 (414)
+-+.+..--+| ++.|+++|..-.|++.. ..++..+|+.+.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34454443333 78999998544333210 133567888899999
Q ss_pred CCCeEEEccc
Q 015038 161 VPMGKMFPSV 170 (414)
Q Consensus 161 kpgG~lip~~ 170 (414)
+|||+|++..
T Consensus 174 v~GG~mvl~~ 183 (334)
T PF03492_consen 174 VPGGRMVLTF 183 (334)
T ss_dssp EEEEEEEEEE
T ss_pred ccCcEEEEEE
Confidence 9999998653
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.01 E-value=0.99 Score=42.90 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=46.3
Q ss_pred CCEEEEECCCccHHHHHHHHc---------CCCeEEEEeChH-HHHHHHHHHHhC----CCCCCcEEEEEcccccccCCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA---------GAKHVYAVEASE-MAEYARKLIAGN----PSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~---------g~~~V~gvD~s~-~~~~a~~~~~~n----~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.-+|+|+|+|+|.++..+++. ...+++.||+|+ +.+..++++... .....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999888764 123799999996 666666665431 1134456663 3444432
Q ss_pred ceeEEEEcCCcccc
Q 015038 130 KADILISEPMGTLL 143 (414)
Q Consensus 130 ~fDvIis~~~~~~l 143 (414)
..-+|++|-+...+
T Consensus 95 ~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 FPGFIIANELFDAL 108 (252)
T ss_dssp CCEEEEEESSGGGS
T ss_pred CCEEEEEeeehhcC
Confidence 45667776544433
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.82 E-value=1.5 Score=43.59 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---ccc----cccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---KVE----EVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d~~----~~~~~~ 129 (414)
...++.+||-.|||. |.++..+|++ |+++|+++|.++ ..+.+++. + . + .++.. +.. +.....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G-a-~--~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G-A-T--HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-C-c--eEEcCCCcCHHHHHHHHhCCC
Confidence 345788999999875 6667777775 776799999884 55555432 2 1 1 22221 111 111123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+|+|+- ..+ .. ..+....+.|+++|+++..
T Consensus 245 g~d~vid-~~g----~~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVID-AVG----RP----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEE-CCC----CH----HHHHHHHHHhccCCEEEEE
Confidence 5899884 222 11 1233445789999998753
No 311
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.76 E-value=0.61 Score=45.49 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=50.0
Q ss_pred EEECCCccHH-HHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------cCCCceeEEEEc
Q 015038 68 VDVGAGSGIL-SLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--------ELPEKADILISE 137 (414)
Q Consensus 68 LDiGcGtG~l-s~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--------~~~~~fDvIis~ 137 (414)
+|||.|.-.+ .+.-++...-...++|+++ ....|..++.+|+ +...|.+++-...+- ..+..||.+.||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888876433 2222222223688999997 5599999999997 888888887644222 122459999999
Q ss_pred CCcc
Q 015038 138 PMGT 141 (414)
Q Consensus 138 ~~~~ 141 (414)
+++.
T Consensus 186 PPFf 189 (419)
T KOG2912|consen 186 PPFF 189 (419)
T ss_pred Cchh
Confidence 8854
No 312
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.57 E-value=1.1 Score=45.13 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh----HHHHHHHH----HHHhCCCCCCcEEEEEcccc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS----EMAEYARK----LIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s----~~~~~a~~----~~~~n~~l~~~i~vi~~d~~ 123 (414)
..+.+.+...++....|+|+|.|.+..+++.. +.++-+|+|+. +++...++ ..+..|.-...++.++++..
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 33555666678899999999999887776664 66678899985 23322222 22222212456888998887
Q ss_pred ccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 124 EVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 124 ~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+.. +....++|+++.+. .++..... +..+..-+++|-+++
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~---Fdp~L~lr-~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA---FDPELKLR-SKEILQKCKDGTRII 305 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc---CCHHHHHh-hHHHHhhCCCcceEe
Confidence 643 22468899986542 23222112 235556678887775
No 313
>PRK11524 putative methyltransferase; Provisional
Probab=90.44 E-value=0.28 Score=47.56 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=40.6
Q ss_pred cEEEEEcccccc--cCC-CceeEEEEcCCccccC-------------ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 114 RITVIKGKVEEV--ELP-EKADILISEPMGTLLV-------------NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 ~i~vi~~d~~~~--~~~-~~fDvIis~~~~~~l~-------------~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...++++|+.++ .++ ++||+|+++|+..... ....+..++.++.|+|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 457899999885 233 6899999998853210 0122467889999999999999864
No 314
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.23 E-value=2.5 Score=40.52 Aligned_cols=92 Identities=27% Similarity=0.234 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc-c----cccccCCCcee
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG-K----VEEVELPEKAD 132 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~-d----~~~~~~~~~fD 132 (414)
..++.+||-+|+|. |.++..+|++ |+++|+++|.++ -.+.+++. + .. .++.. + +.+......+|
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G-a~---~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G-AT---ALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C-Cc---EecCchhhHHHHHHHhCCCCCC
Confidence 34788999999875 6666666665 776799999874 44555442 2 11 11111 1 11111123589
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++-. .+ . ...+....+.|+++|.++..
T Consensus 190 ~vid~-~G----~----~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEF-SG----A----TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEEC-CC----C----hHHHHHHHHHhcCCCEEEEe
Confidence 98842 11 1 12334456789999998743
No 315
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.22 E-value=1.1 Score=43.70 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=51.0
Q ss_pred CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
++++||-+|||. |.++..+|++ |++.|+++|.++ .++.|... . ++ +..+. ....+|+|+- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-------~i--~~~~~-~~~g~Dvvid-~~ 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-------VL--DPEKD-PRRDYRAIYD-AS 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-------cc--Chhhc-cCCCCCEEEE-CC
Confidence 567899899886 7787777775 887788888874 44444321 0 11 11110 1246898884 22
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+. ...+..+.+.|+++|+++..
T Consensus 209 G~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 GD--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CC--------HHHHHHHHHhhhcCcEEEEE
Confidence 21 22334556789999998743
No 316
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.20 E-value=0.58 Score=44.86 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
+.+++....+..|+.|+-+| -.-+.+++++-.| +++|..+|+++ .+....+.+.+.+ . ++++.+.-|++..-+
T Consensus 141 Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~-~~ie~~~~Dlr~plpe~ 217 (354)
T COG1568 141 RVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-Y-NNIEAFVFDLRNPLPED 217 (354)
T ss_pred eeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-c-cchhheeehhcccChHH
Confidence 34455556677889999999 4446666666544 67899999995 7788777777654 2 458888888877422
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
.++||+.+.+|+...- .+..++..--..||.-
T Consensus 218 ~~~kFDvfiTDPpeTi~----alk~FlgRGI~tLkg~ 250 (354)
T COG1568 218 LKRKFDVFITDPPETIK----ALKLFLGRGIATLKGE 250 (354)
T ss_pred HHhhCCeeecCchhhHH----HHHHHHhccHHHhcCC
Confidence 2689999998875431 2555555444556655
No 317
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.18 E-value=3.5 Score=36.63 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccc-c----CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEV-E----LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~----~~~~fDvIis~ 137 (414)
.+.+|+-|||=+-...+.-......+++..|.+.- +.. +..+ .++.=|.... . +.++||+||++
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R-------F~~---~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR-------FEQ---FGGD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch-------HHh---cCCc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 45799999998744444331224457999999841 111 1222 3443344332 1 23689999999
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+. ..+..+......++.++|+++.++...+
T Consensus 94 PPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPF---LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCC---CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 987 4566677777777777899888875543
No 318
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.90 E-value=2.1 Score=39.26 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 45777888899999999976
No 319
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.73 E-value=1.6 Score=43.30 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHH--cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQ--AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~--~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++ .+ . ...+ .++.....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-~---~~~~----~~~~~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-E---TYLI----DDIPEDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-c---eeeh----hhhhhccCCcEEEE
Confidence 35688999999986 767666565 3666899999984 5555543 11 1 1111 11111124898884
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+... ....+....++|+++|+++..
T Consensus 229 -~~G~~~-----~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 -CVGGRG-----SQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -CCCCCc-----cHHHHHHHHHhCcCCcEEEEE
Confidence 223110 123345556889999998743
No 320
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.72 E-value=0.89 Score=45.55 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=53.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc----cc--CCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE----VE--LPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~----~~--~~~ 129 (414)
....++.+||-.|+|. |.++..+|++ |+++|+++|.++ .++.+++. + .. .++..+-.+ +. .++
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G-a~---~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G-AT---ATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C-Cc---eEeCCCchhHHHHHHHHhCC
Confidence 3345678888899875 6666666765 776799999884 55555442 2 11 122211111 10 123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-. .+ . ...+....+.|+++|.++.
T Consensus 259 g~d~vid~-~G----~----~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 259 GVDYAFEM-AG----S----VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCCEEEEC-CC----C----hHHHHHHHHHHhcCCEEEE
Confidence 68999842 12 1 1223344578999999874
No 321
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.65 E-value=1.8 Score=43.23 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHhCCCCCCcEEE
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE----------------------MAEYARKLIAGNPSLGERITV 117 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~----------------------~~~~a~~~~~~n~~l~~~i~v 117 (414)
.++++||-||||. | .++..++++|..+++.+|.+. -++.|++.+.+.+ ..-+++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVP 100 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEE
Confidence 3567899999995 4 567778888998999999862 2334445554432 2345666
Q ss_pred EEccccccc---CCCceeEEEEc
Q 015038 118 IKGKVEEVE---LPEKADILISE 137 (414)
Q Consensus 118 i~~d~~~~~---~~~~fDvIis~ 137 (414)
+..++..-. +-..+|+||..
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEc
Confidence 666654221 12579999963
No 322
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.57 E-value=1.3 Score=43.22 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCEEEEECCCc-cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 63 IGRVVVDVGAGS-GILSLFAA-QAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a-~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
++.+|.-||.|. |..+.-+| ..|+ .|+.+|.| +-+...... +..++..+......+... .+.|++|...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~------f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL------FGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh------hCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 345677888886 65544444 3466 59999999 555444443 345788888777666533 5899999743
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.....+.-+.+++.+.+|||++++
T Consensus 240 ---LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 ---LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ---EecCCCCceehhHHHHHhcCCCcEEE
Confidence 34445556666777788999999875
No 323
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.48 E-value=0.72 Score=41.59 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCC-EEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCC-CCcEEEEEcc
Q 015038 45 YVRTGTYYAAVIENRADFIGR-VVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSL-GERITVIKGK 121 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~-~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l-~~~i~vi~~d 121 (414)
..|+..+...+.+.+...++. .|+.+|||-=.....+... +..+++-+|..++++.-++.+...+.. ..+.+++.+|
T Consensus 59 ~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~D 138 (183)
T PF04072_consen 59 AARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPAD 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEecc
Confidence 345555555555555333444 8999999998887777764 344566666667777666666654211 1235578888
Q ss_pred cccccC----------CCceeEEEEcCCccccCChhhHHHHHHHH
Q 015038 122 VEEVEL----------PEKADILISEPMGTLLVNERMLETYVIAR 156 (414)
Q Consensus 122 ~~~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~ 156 (414)
+.+... +...-+++++.+..++.. .....++..+
T Consensus 139 l~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~-~~~~~ll~~i 182 (183)
T PF04072_consen 139 LRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSP-EQVDALLRAI 182 (183)
T ss_dssp TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-H-HHHHHHHHHH
T ss_pred ccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCH-HHHHHHHHHh
Confidence 876321 245678888888877754 3355555543
No 324
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.39 E-value=1.1 Score=43.93 Aligned_cols=93 Identities=29% Similarity=0.319 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---c---cccccCCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---K---VEEVELPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d---~~~~~~~~ 129 (414)
....++.+||-+|+|. |.++..++++ |+++|++++.++ ..+.+++. + .. .++.. + +.+.....
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g-a~---~~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G-AD---FVINSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C-CC---EEEcCCcchHHHHHHHhCCC
Confidence 3445688999998865 6666666665 776699999874 55555432 1 11 12211 1 11111123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-.. + . ...+....+.|+++|.++.
T Consensus 231 ~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 231 GADVAIECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998421 1 1 1223344578999999874
No 325
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.95 E-value=1.4 Score=42.30 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=44.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC------CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG------AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g------~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
.++..++|+|||.|.|+..+++.- ...++.||....-..+...+.... ....++-+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~-~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDE-SEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccC-CCCceEEEEEEeeccch
Confidence 466799999999999999998863 347999998632223333343332 12457888888888764
No 326
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.82 E-value=2 Score=42.88 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHhCCCCCCcEEEE
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE----------------------MAEYARKLIAGNPSLGERITVI 118 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~----------------------~~~~a~~~~~~n~~l~~~i~vi 118 (414)
...+||-+|||. | ..+..++++|..+++.+|.+. -++.|++.+.+.+ ..-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEE
Confidence 567899999995 4 467778888999999999751 2233444444322 22345666
Q ss_pred Eccccccc---CCCceeEEEE
Q 015038 119 KGKVEEVE---LPEKADILIS 136 (414)
Q Consensus 119 ~~d~~~~~---~~~~fDvIis 136 (414)
..++..-. +-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 65554321 1257999996
No 327
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.82 E-value=4.1 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999996 4 46777888899889999887
No 328
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.77 E-value=1.4 Score=44.12 Aligned_cols=40 Identities=43% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHH
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~ 103 (414)
-+.|+|+|+|-|.++.+++-...-.|+|||-|. ..+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 368999999999999999876333799999995 3344433
No 329
>PRK13699 putative methylase; Provisional
Probab=88.55 E-value=0.57 Score=43.95 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.6
Q ss_pred EEEEEcccccc--cCC-CceeEEEEcCCcccc---------CC---hhhHHHHHHHHHhccCCCeEEEc
Q 015038 115 ITVIKGKVEEV--ELP-EKADILISEPMGTLL---------VN---ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 115 i~vi~~d~~~~--~~~-~~fDvIis~~~~~~l---------~~---e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++++++|+.++ .++ +++|+||.+|+.... .+ ...+..++.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 36778888775 344 789999999885310 00 12356778999999999998864
No 330
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.42 E-value=3.5 Score=38.22 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-------------------HHHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-------------------EMAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-------------------~~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
+..+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+++++...+ ..-+++.+...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEEEeee
Confidence 567899999995 4 56777888899999999987 12334444444422 23345555554
Q ss_pred cccccC---CCceeEEEE
Q 015038 122 VEEVEL---PEKADILIS 136 (414)
Q Consensus 122 ~~~~~~---~~~fDvIis 136 (414)
+.+... -..+|+||.
T Consensus 106 i~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVE 123 (212)
T ss_pred cCHHHHHHHHcCCCEEEE
Confidence 443211 146999996
No 331
>PLN02740 Alcohol dehydrogenase-like
Probab=87.97 E-value=3.3 Score=41.61 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3456788999999875 6666667765 77679999998 45566644
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.45 E-value=2.2 Score=39.67 Aligned_cols=90 Identities=28% Similarity=0.331 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc------ccCCCceeE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE------VELPEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~------~~~~~~fDv 133 (414)
.++.+||..|+|+ |.....+++....+|++++.++ ..+.+++. + .. .++...-.+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----G-AD---HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----C-Cc---eeccCCcCCHHHHHHHhcCCCCCE
Confidence 5788999999996 6666666665335799999984 55554432 1 11 111111111 111357999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++.... .. ..+....+.|+++|.++.
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEEE
Confidence 986321 11 233445578899999864
No 333
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.34 E-value=2.8 Score=37.38 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=62.1
Q ss_pred EECCCccHHHHHHHHc-C-CCeEEEEeCh--H-HHH---HHHHHHHhCCCCCCcEEEEE-cccccccC-----CCceeEE
Q 015038 69 DVGAGSGILSLFAAQA-G-AKHVYAVEAS--E-MAE---YARKLIAGNPSLGERITVIK-GKVEEVEL-----PEKADIL 134 (414)
Q Consensus 69 DiGcGtG~ls~~~a~~-g-~~~V~gvD~s--~-~~~---~a~~~~~~n~~l~~~i~vi~-~d~~~~~~-----~~~fDvI 134 (414)
-||=|.=.++..+++. + ...++|.-.+ + ..+ .+..++..-. ...+.++. -|+.++.. ..+||.|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~--~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR--ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh--hcCCccccCCCCCcccccccccCCcCCEE
Confidence 4666766777777776 4 5567776654 2 222 1334444321 12244433 36666532 2689999
Q ss_pred EEcCCcccc----------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLL----------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l----------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|-|.|.... .+...+..++..+.++|+++|.+.++..
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 999875541 1234467889999999999999876644
No 334
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.31 E-value=0.29 Score=40.32 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.5
Q ss_pred ceeEEEEcCCcc--cc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGT--LL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~--~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|-.+.- ++ .+..-+..+++.+.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 589999855422 11 23344888999999999999999865
No 335
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.29 E-value=2.3 Score=42.24 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeC---h-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEA---S-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~---s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
.++.+||-+|+|. |.++..+|++ |+ +|++++. + +-.+.+++ .+ . +.+.....+..+......+|+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~G-a-~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LG-A-TYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cC-C-EEecCCccchhhhhhcCCCCEEE
Confidence 4678999999875 7777777776 66 6999987 3 23344432 22 1 11111111111111124689888
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
-. .+ . ...+....+.|+++|.++.
T Consensus 244 d~-~g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 244 EA-TG----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EC-cC----C----HHHHHHHHHHccCCcEEEE
Confidence 52 12 1 1234555688999998864
No 336
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=87.21 E-value=5.4 Score=38.01 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCc--cHH-HHHHHHc----CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 62 FIGRVVVDVGAGS--GIL-SLFAAQA----GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGt--G~l-s~~~a~~----g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
....+||-+|+|+ |.- +-...+. |+ .++-.|+.+. .++.-..+.+|...+.++.++|+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlI 125 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLI 125 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEE
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhh-------------ccccCCceeccccccCCCCcccEE
Confidence 3467999999997 322 2222332 33 4666666552 223345677999999889999999
Q ss_pred EEcCCc--------cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMG--------TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~--------~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+.-. .-...+.-...+..-++..|+-||.+.+-
T Consensus 126 iSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 126 ISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp EE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 998651 11222344556666677889999998653
No 337
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.90 E-value=1.7 Score=40.30 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+-+.|..........-|.+||.|.|..+..+..+|+.++..||++. .+.-.+...++. ..+..+.++|+..+.
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa---~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA---PGKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC---CcceEEeccccceeh
Confidence 3345666666667788999999999999999999999999999984 554444443332 346788888886653
No 338
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.40 E-value=3 Score=40.86 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChHHHHHHHHHHHhCCC-CCCcEEEEEcccc
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASEMAEYARKLIAGNPS-LGERITVIKGKVE 123 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~~~~~a~~~~~~n~~-l~~~i~vi~~d~~ 123 (414)
.|+..+-+.+...+... ...|+-+|||-=.-+..+-. +. .+|+=+|.-+.++.-++.++..+. .....+++..|++
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 45444445555554433 57899999995332222221 22 367777776777776666666542 2347899999998
Q ss_pred cccC----------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 124 EVEL----------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 124 ~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+-.. +..--++|++.+..++.. .....++..+...+.||-.++...
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~-~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPE-EAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCH-HHHHHHHHHHHHhCCCCceEEEec
Confidence 4321 234558889988877764 447889999999888888876553
No 339
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.03 E-value=4.9 Score=37.56 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--------------------EMAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--------------------~~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
...+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+++++.+.+ ..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEEEecc
Confidence 567899999995 4 56777888899999988643 12344444554432 2234666655
Q ss_pred cccccc---CCCceeEEEEc
Q 015038 121 KVEEVE---LPEKADILISE 137 (414)
Q Consensus 121 d~~~~~---~~~~fDvIis~ 137 (414)
.+.... +-..+|+||+.
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEc
Confidence 542211 11469999973
No 340
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.84 E-value=2.3 Score=42.04 Aligned_cols=94 Identities=26% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---ccc---ccCCCc
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---VEE---VELPEK 130 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~~~---~~~~~~ 130 (414)
...++.+||-.|+|. |.++..+|++ |++.|++++.++ ..+.+++. + .. .++..+ ... ......
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G-a~---~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G-AM---QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-Cc---eEecCcccCHHHHHHHhcCCC
Confidence 345678999999876 6666666665 776689999874 44544331 2 11 122111 111 111235
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|.++.+..+. ...+....+.|++||.++..
T Consensus 229 ~d~~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 77343333332 22334455788999998754
No 341
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.06 E-value=2 Score=42.16 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 015038 56 IENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKL 104 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~ 104 (414)
.......++.+|.-+|+|. |+-..+-|++ |+++++|||++ +-.+.|++.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3444557889999999997 7666666665 99999999999 466777663
No 342
>PLN02827 Alcohol dehydrogenase-like
Probab=85.02 E-value=8.3 Score=38.77 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
...++.+||-.|+|. |.++..+|++ |+..|+++|.+ +..+.|++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 446788999999875 6666666665 77679999977 45555543
No 343
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=3.8 Score=40.90 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=34.8
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc---------CCCeEEEEeChH-HHHHHHHHHHh
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA---------GAKHVYAVEASE-MAEYARKLIAG 107 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~---------g~~~V~gvD~s~-~~~~a~~~~~~ 107 (414)
......-.++|+|+|+|.++..+++. .+.+++.||+|+ ....-+++++.
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 33344568999999999998777654 245899999996 55555555543
No 344
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.91 E-value=6.1 Score=38.33 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc------ccCCCce
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE------VELPEKA 131 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~------~~~~~~f 131 (414)
..++.+||..|+|. |..+..+|+. |. +|++++.+ +..+.+++. + .. .++...-.. ......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----G-AD---EVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----C-CC---EEEcCCCcCHHHHHHHhcCCCc
Confidence 45677888888774 7777777775 65 59999988 455555432 2 21 111111101 1123569
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+++... + . ...+..+.+.|+++|.++..
T Consensus 234 D~vid~~-g----~----~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFV-G----T----QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 9988521 1 1 22345566899999998743
No 345
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.70 E-value=7.8 Score=35.40 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=45.3
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--H------------------HHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--M------------------AEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--~------------------~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
+..+||-+|||. | ..+..++.+|.++++.+|.+. . ++.+++.+++.+ ..-+++....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN-p~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN-PRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC-CCCEEEEEec
Confidence 457899999986 3 456667778999999998641 1 233444444432 2234555555
Q ss_pred cccccc--CCCceeEEEEc
Q 015038 121 KVEEVE--LPEKADILISE 137 (414)
Q Consensus 121 d~~~~~--~~~~fDvIis~ 137 (414)
.+.+.. .-..||+|++.
T Consensus 99 ~~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 99 DISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred CccccHHHHHhCCCEEEEC
Confidence 444321 11579999974
No 346
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.69 E-value=3.5 Score=43.35 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
.++.+||-+|+|. |..+..+++. |+ .|+++|.++ .++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3568999999997 7777777765 77 599999985 4455444
No 347
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=83.32 E-value=7.1 Score=37.95 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHH---HHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGIL---SLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~l---s~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+...+.+.....+++++|-+|+| |.- +..+++.|+++|+.++.+. ..+.+++..+........+.+...|+.+..
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~ 191 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTE 191 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhh
Confidence 44555443334567899999997 532 2334466888899998873 222232222211001122334444544321
Q ss_pred ----CCCceeEEEEcCC
Q 015038 127 ----LPEKADILISEPM 139 (414)
Q Consensus 127 ----~~~~fDvIis~~~ 139 (414)
.-..+|+||...+
T Consensus 192 ~~~~~~~~~DilINaTp 208 (289)
T PRK12548 192 KLKAEIASSDILVNATL 208 (289)
T ss_pred HHHhhhccCCEEEEeCC
Confidence 1146799996544
No 348
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.96 E-value=1.5 Score=45.28 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------cCCCcee
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--------ELPEKAD 132 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--------~~~~~fD 132 (414)
.+.++|-+|-|.|.+..++... +..++++||+++ |++.|+..+.-.. .++..+.-.|..+. .-...||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3457899999999998887765 556899999995 8899988875321 12333433343322 1124799
Q ss_pred EEEEcCCc---ccc---CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMG---TLL---VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~---~~l---~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++...-+ +.+ ..+-..+.++..++..|.|.|.+++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 99864322 111 11222467788889999999998643
No 349
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.76 E-value=9.1 Score=31.93 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.5
Q ss_pred CCEEEEECCCcc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEE
Q 015038 64 GRVVVDVGAGSG-ILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILIS 136 (414)
Q Consensus 64 ~~~VLDiGcGtG-~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis 136 (414)
.++|.++|.|.= ..+..+++.|.. |+++|+++. +. ...+.++..|+.+.... +..|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~------~a------~~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK------TA------PEGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc------cC------cccceEEEccCCCccHHHhhCccceee
Confidence 348999999873 346777888875 999999863 11 12478999999876543 67899997
No 350
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.59 E-value=12 Score=31.85 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=42.0
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--------------------EMAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--------------------~~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+||-+|||. | ..+..+++.|..+++.+|.+ +-++.+++.+.+.+ ..-+++.+...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 478899984 4 45777888899899999854 11233344444322 2234555554443
Q ss_pred cc---cCCCceeEEEEc
Q 015038 124 EV---ELPEKADILISE 137 (414)
Q Consensus 124 ~~---~~~~~fDvIis~ 137 (414)
.. ..-..+|+|+..
T Consensus 80 ~~~~~~~~~~~diVi~~ 96 (143)
T cd01483 80 EDNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhhHHHHhcCCCEEEEC
Confidence 32 122579999973
No 351
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.43 E-value=7.2 Score=37.97 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=54.6
Q ss_pred CCCCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 60 ADFIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
....+++||-=|.|+| .++..+|+.|+ ++...|++ +-.+...+.++++| ++....+|+.+.+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHH
Confidence 3456889999999998 46888889998 69999998 45555555555543 68888888876521
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-+.+|++|.|.
T Consensus 109 k~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 109 KKEVGDVDILVNNA 122 (300)
T ss_pred HHhcCCceEEEecc
Confidence 15799999763
No 352
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.06 E-value=9.8 Score=34.01 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899995 5 45777888899889999875
No 353
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.86 E-value=9.9 Score=38.15 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=47.2
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--------------------HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--------------------MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--------------------~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
++.+||-+|||. | ..+..++++|.++++.+|.+. .++.|++++.+.+ ..-+++.+..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEEEEEe
Confidence 567999999995 4 456778888999999988642 2334555554432 2334555555
Q ss_pred ccccc---cCCCceeEEEEc
Q 015038 121 KVEEV---ELPEKADILISE 137 (414)
Q Consensus 121 d~~~~---~~~~~fDvIis~ 137 (414)
.+..- .+-..+|+|+..
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNALDELRDADVILDG 125 (355)
T ss_pred ecCHHHHHHHHhCCCEEEEC
Confidence 54431 122579999963
No 354
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.58 E-value=11 Score=35.80 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--H------------------HHHHHHHHHHhCCCCCCcEEEEE
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--E------------------MAEYARKLIAGNPSLGERITVIK 119 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~------------------~~~~a~~~~~~n~~l~~~i~vi~ 119 (414)
.+.++||-+|||. | ..+..+++.|..+++.+|.+ + -++.+++++.+.+ ..-+++.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIETIN 108 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEEEEe
Confidence 3567999999984 4 45667778899999988764 1 1223334444322 233556665
Q ss_pred cccccccC---CCceeEEEEc
Q 015038 120 GKVEEVEL---PEKADILISE 137 (414)
Q Consensus 120 ~d~~~~~~---~~~fDvIis~ 137 (414)
..+.+... -..+|+||..
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDC 129 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEec
Confidence 55443211 1479999963
No 355
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.57 E-value=11 Score=36.87 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
..+++++|-.|+++|+ ++..+++.|+ +|+.+..+ +-++.+.+.+.... -..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3567899999988764 3445566687 69988887 44444433333221 1246888999987752
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..++.|++|.+.
T Consensus 89 ~~~~~iD~li~nA 101 (313)
T PRK05854 89 AEGRPIHLLINNA 101 (313)
T ss_pred HhCCCccEEEECC
Confidence 124689999764
No 356
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.51 E-value=20 Score=34.47 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=46.0
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.+..+ . ..+.....+... ..++.++.+|+.+...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE---GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4567899999987653 3455556677 58888775 2 233333333332 2468889999876421
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-.++|+||.+.
T Consensus 119 ~~~~~~iD~lI~~A 132 (290)
T PRK06701 119 VRELGRLDILVNNA 132 (290)
T ss_pred HHHcCCCCEEEECC
Confidence 13689998653
No 357
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.47 E-value=25 Score=32.17 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=43.8
Q ss_pred CCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 63 IGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 63 ~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
++++||-.|++.|+ ++..+++.|+ +|++++.++ -+..+.+..... .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999987542 3344445577 699999874 333333333322 257888898876420
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-+++|.++.+.
T Consensus 79 ~~~id~ii~~a 89 (238)
T PRK05786 79 LNAIDGLVVTV 89 (238)
T ss_pred hCCCCEEEEcC
Confidence 13468888754
No 358
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.39 E-value=11 Score=38.62 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHhcC-CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+.+... ...+++|+-+|+|. |.....+++. |+ +|+++|.++ -+..|+. .+ ..+. +..+. -
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G-----~~~~--~~~e~--v 255 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EG-----YEVM--TMEEA--V 255 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cC-----CEEc--cHHHH--H
Confidence 44444432 35789999999997 7766666654 77 699999985 4444443 22 1222 11221 1
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+|+|+... + . ...+-.+..+.+|+||+++..
T Consensus 256 ~~aDVVI~at-G----~---~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 256 KEGDIFVTTT-G----N---KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred cCCCEEEECC-C----C---HHHHHHHHHhcCCCCcEEEEe
Confidence 3579998631 1 1 122223336789999988644
No 359
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.23 E-value=3.9 Score=40.38 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc-------cccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE-------EVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~-------~~~~~~ 129 (414)
...++.+||-.|+|. |..+..+|++ |+.+|++++.++ ..+.+++ .+ .. .++..+-. ++....
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YG-AT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cC-Cc---eEecCCCCCHHHHHHHHhCCC
Confidence 445678898888774 6666666665 776799999874 4455443 22 21 22221111 111124
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++... + . ...+....+.|+++|+++-
T Consensus 235 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 1 1 1234555678999998863
No 360
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.17 E-value=9.9 Score=37.10 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---cccccC-CCceeEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---VEEVEL-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~~~~~~-~~~fDvI 134 (414)
.++.+||..|||. |..+..++++ |..+|++++.++ ..+.+++. + . + .++..+ ...... .+.+|++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g-~-~--~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G-A-D--ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C-C-C--EEEcCCchhhhhhhccCCCccEE
Confidence 3788898888875 6666666665 775799999874 55544432 1 1 1 122211 112211 2459999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+... + . ...+....+.|+++|+++.
T Consensus 236 ld~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 236 FEAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 8531 1 1 1223455688999999864
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.11 E-value=12 Score=37.27 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=31.2
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
....++.+||-.|+|. |.++..+|++ |+.+|++++.++ ..+.+++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3446788999888864 5666666665 776899999874 5555543
No 362
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.94 E-value=25 Score=32.68 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=60.2
Q ss_pred HHHhcCCCCCCEEEEECCCcc----HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-ccccC
Q 015038 55 VIENRADFIGRVVVDVGAGSG----ILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVEL 127 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG----~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~~ 127 (414)
|.....-..-+.++++.|+-| .+++.+|. +-..++++|-.+ +.....++.+...+ +.+.++|+.++. +++-.
T Consensus 33 ISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 33 ISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred HHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHh
Confidence 333344455678999966543 22333332 223368888887 44555556565554 667789998884 33321
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
-..+|+++.+.= .++....+|+.+. +.|.|.++...
T Consensus 112 ~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 112 GLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred hccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEe
Confidence 257898886421 1222225665543 55667665543
No 363
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.59 E-value=3.9 Score=40.81 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc-------ccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV-------EEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~-------~~~~~~~ 129 (414)
...++.+||-.|+|. |.++..+|++ |+.+|++++.++ ..+.+++. + . -.++..+- .+.. ..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g-~---~~~i~~~~~~~~~~v~~~~-~~ 253 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----G-A---THVINPKEEDLVAAIREIT-GG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C-C---cEEecCCCcCHHHHHHHHh-CC
Confidence 345678898888765 6666667765 777899999884 44444331 1 1 12222111 1112 34
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-.. + . ...+..+.+.|+++|.++.
T Consensus 254 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 254 GVDYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CCcEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 689998521 1 1 1223455678899998874
No 364
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=37 Score=32.38 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc----C-CCeEEEEeChH-HH-HHHHHHHHhCCCCCCcEEEEEcccccc--cCCC-ce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA----G-AKHVYAVEASE-MA-EYARKLIAGNPSLGERITVIKGKVEEV--ELPE-KA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~----g-~~~V~gvD~s~-~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~-~f 131 (414)
..+...+|+|+|+..-+..+..+ | ..+.+.||+|. .+ ..|+....... .-.+.-+.+|.+.. .+++ .-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCCe
Confidence 45679999999998666665554 3 34899999994 55 56677666654 33466667776542 1222 11
Q ss_pred eEEEEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
-+++. +|+.+. .+.....++..+...|+||-.+++..
T Consensus 155 Rl~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22221 233222 23446788899999999999987654
No 365
>PRK06153 hypothetical protein; Provisional
Probab=80.06 E-value=12 Score=37.90 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.++.+|+-||||. | ..+..+|+.|..+++.+|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4567999999985 5 56778889999999999875
No 366
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.03 E-value=8.3 Score=31.88 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=50.5
Q ss_pred CccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------cCCCceeEEEEcCCcccc
Q 015038 73 GSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------ELPEKADILISEPMGTLL 143 (414)
Q Consensus 73 GtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~~~~fDvIis~~~~~~l 143 (414)
|.|.++..+|++ | .+|+++|.++ -.+.+++. + --.++..+-.++ .....+|+|+-. .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----G----a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----G----ADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----T----ESEEEETTTSSHHHHHHHHTTTSSEEEEEES-SS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----c----ccccccccccccccccccccccccceEEEEe-cC---
Confidence 458888888887 6 6899999995 55666552 2 112333322211 112479999842 11
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. ...++...+.|+++|.++.....
T Consensus 68 -~----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -S----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -S----HHHHHHHHHHEEEEEEEEEESST
T ss_pred -c----HHHHHHHHHHhccCCEEEEEEcc
Confidence 1 33445666889999998765443
No 367
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=79.87 E-value=4.4 Score=40.17 Aligned_cols=51 Identities=31% Similarity=0.432 Sum_probs=39.6
Q ss_pred HHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHH
Q 015038 54 AVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKL 104 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~ 104 (414)
+..+.....++.+|.-+|||. |..++.-|+. |+.+++|||+++ -++.|++.
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 344555667889999999986 8777777765 899999999994 66777763
No 368
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=79.78 E-value=13 Score=36.67 Aligned_cols=93 Identities=27% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc-------cccccCCCce
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK-------VEEVELPEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d-------~~~~~~~~~f 131 (414)
.++.+||-.|+|. |..+..+|+. |+++|++++.++ ....+++ .+ ...-+.....+ +.+......+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FG-ADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cC-CCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 3678888888764 5555556655 775799998874 4444432 22 21111111111 1111112469
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+|+.. .+ . ...+....+.|+++|+++.
T Consensus 251 d~vid~-~g----~----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 251 DVVIEA-SG----H----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred cEEEEC-CC----C----hHHHHHHHHHhccCCEEEE
Confidence 999852 11 1 1223445578999999874
No 369
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.74 E-value=10 Score=36.96 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=44.9
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--------------------HHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--------------------MAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--------------------~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+||-+|||. | .++..++..|.++++.+|.+. -++.|.+.+.+.+ ..-+++....++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-p~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-PGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-CCCEEEEEecccC
Confidence 488899984 4 456777788999999988641 1233444444322 2345777777776
Q ss_pred cccC--CCceeEEEE
Q 015038 124 EVEL--PEKADILIS 136 (414)
Q Consensus 124 ~~~~--~~~fDvIis 136 (414)
+... -..||+|++
T Consensus 80 ~~~~~f~~~fdvVi~ 94 (291)
T cd01488 80 DKDEEFYRQFNIIIC 94 (291)
T ss_pred chhHHHhcCCCEEEE
Confidence 5432 257999997
No 370
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.24 E-value=13 Score=35.21 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
++.+||-+|||. | ..+..++++|..+++.+|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567899999995 4 45777888899999988864
No 371
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.09 E-value=12 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=27.4
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.++++||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567899999984 4 45677788899999999986
No 372
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.00 E-value=16 Score=35.92 Aligned_cols=90 Identities=20% Similarity=0.041 Sum_probs=51.4
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
....++.+||-.|+|. |.++..+|++ |+ +|++++.++ -.+.|++. + .. .++.. .+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----G-a~---~vi~~--~~~-~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----G-AA---SAGGA--YDT-PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----C-Cc---eeccc--ccc-CcccceEEE
Confidence 3445788999999864 5566666665 66 699999884 55555542 2 11 12211 111 124578665
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
-.. + . ...+....+.|+++|+++..
T Consensus 229 ~~~-~----~----~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 229 LFA-P----A----GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ECC-C----c----HHHHHHHHHhhCCCcEEEEE
Confidence 311 1 1 12345556889999998653
No 373
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=78.38 E-value=7.2 Score=33.09 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCCEEEEECCCcc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEE
Q 015038 63 IGRVVVDVGAGSG-ILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG-~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis 136 (414)
...+|+|||-|.= ..+..+.++|. .|+++|+++. .+. ..+.++..|+.+-.+. +..|+|.|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 3459999999984 45677777886 6999999863 111 2367888898875443 67999998
No 374
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.14 E-value=9.9 Score=32.34 Aligned_cols=74 Identities=31% Similarity=0.389 Sum_probs=45.0
Q ss_pred cCCCCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEE
Q 015038 59 RADFIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADIL 134 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvI 134 (414)
....++++||-+|+|- | .....++..|+++|+.+..+ +-++...+.+.. ..+.++.. .++. ....+|+|
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~-----~~~~~~~~--~~~~~~~~~~Div 79 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG-----VNIEAIPL--EDLEEALQEADIV 79 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG-----CSEEEEEG--GGHCHHHHTESEE
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc-----cccceeeH--HHHHHHHhhCCeE
Confidence 3456889999999985 3 33444556699899999988 444333333311 23555543 3332 12579999
Q ss_pred EEcCC
Q 015038 135 ISEPM 139 (414)
Q Consensus 135 is~~~ 139 (414)
|+...
T Consensus 80 I~aT~ 84 (135)
T PF01488_consen 80 INATP 84 (135)
T ss_dssp EE-SS
T ss_pred EEecC
Confidence 97543
No 375
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=78.10 E-value=18 Score=36.77 Aligned_cols=100 Identities=20% Similarity=0.087 Sum_probs=55.2
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---cc----ccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---KV----EEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d~----~~~~~~~ 129 (414)
...++.+||-.|+|. |.++..+|++ |++.|+++|.++ -++.|++. + . . .+... +. .+.....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G-a--~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G-C--E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C-C--e-EEecCCcccHHHHHHHHcCCC
Confidence 345677887788875 6677667765 887677778874 55555542 2 2 1 22211 11 1111123
Q ss_pred ceeEEEEcCCcccc------CChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLL------VNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l------~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++- ..+.-- ..+......+....+++++||.++.
T Consensus 254 g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 6899884 222210 0011122345666689999999875
No 376
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.95 E-value=22 Score=36.08 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=62.8
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCC-cEEEEEcccccccCCCceeEEEEcCCcccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGE-RITVIKGKVEEVELPEKADILISEPMGTLL 143 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~-~i~vi~~d~~~~~~~~~fDvIis~~~~~~l 143 (414)
.||-++-.-|.|+..++..+. +.+-=|-+. ...+.|+..|+ +.. .++++.. .+ ++++.+|+|+.-++-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~-~~~~~~~~~~~--~~-~~~~~~d~vl~~~PK~-- 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNG-IDESSVKFLDS--TA-DYPQQPGVVLIKVPKT-- 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcC-CCcccceeecc--cc-cccCCCCEEEEEeCCC--
Confidence 799999999999999996544 222112233 45577888886 543 3555532 21 3456799999755433
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...++..+..+.+.|.||+.++..
T Consensus 118 --~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 118 --LALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred --HHHHHHHHHHHHhhCCCCCEEEEE
Confidence 344677888899999999998643
No 377
>PRK08328 hypothetical protein; Provisional
Probab=77.86 E-value=19 Score=33.78 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.6
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567899999995 4 45777888899999999843
No 378
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.86 E-value=13 Score=33.49 Aligned_cols=98 Identities=27% Similarity=0.301 Sum_probs=57.8
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh-------CCCCC--------CcEEEEEcccccccC
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG-------NPSLG--------ERITVIKGKVEEVEL 127 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~-------n~~l~--------~~i~vi~~d~~~~~~ 127 (414)
+|.-||+|+ | .++..++.+|. +|+.+|.+ +.++.+++.+.. .+.+. .++.+ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467789987 4 56677777787 69999999 466666555443 11111 23443 3444443
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
...|+|+=..+ .+...-..++..+.+.+.|+.++.-+..+
T Consensus 77 -~~adlViEai~----E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 -VDADLVIEAIP----EDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp -CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred -hhhheehhhcc----ccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 26899985332 23333578889999999999887644443
No 379
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=77.80 E-value=13 Score=34.94 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=42.4
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--EM------------------AEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~~------------------~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+||-+|||. | .+...++..|.++++.+|.+ +. ++.|++++.+.+ ..-+++.+..++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n-p~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN-PNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC-CCCEEEEEeccCC
Confidence 478899984 4 45666777899999998874 21 122333343322 2345666766663
Q ss_pred c---cc--CCCceeEEEE
Q 015038 124 E---VE--LPEKADILIS 136 (414)
Q Consensus 124 ~---~~--~~~~fDvIis 136 (414)
+ +. +-..||+|++
T Consensus 80 ~~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVN 97 (234)
T ss_pred hhhhchHHHHhCCCEEEE
Confidence 2 11 1257999997
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.22 E-value=11 Score=38.28 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=47.6
Q ss_pred CEEEEECCCc-cHH-HHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCceeEEEEc
Q 015038 65 RVVVDVGAGS-GIL-SLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKADILISE 137 (414)
Q Consensus 65 ~~VLDiGcGt-G~l-s~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~fDvIis~ 137 (414)
++||-||||. |.- +..+|+.+...|+..|.+ +.++.+.... ..+++.+.-|+.+.+ +-..+|+||+-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4799999975 433 444566676689999999 5554444331 236888888888763 22467999986
Q ss_pred CCcc
Q 015038 138 PMGT 141 (414)
Q Consensus 138 ~~~~ 141 (414)
.+.+
T Consensus 76 ~p~~ 79 (389)
T COG1748 76 APPF 79 (389)
T ss_pred CCch
Confidence 5543
No 381
>PRK07411 hypothetical protein; Validated
Probab=77.00 E-value=12 Score=38.05 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=46.9
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--EM------------------AEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~~------------------~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
+..+||-+|||. | ..+..++++|..+++.+|.+ +. ++.|++.+.+.+ ..-+|+.+..
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-p~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-PYCQVDLYET 115 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC-CCCeEEEEec
Confidence 567899999995 4 46777888899999998864 22 223344444322 2345666666
Q ss_pred cccccc---CCCceeEEEE
Q 015038 121 KVEEVE---LPEKADILIS 136 (414)
Q Consensus 121 d~~~~~---~~~~fDvIis 136 (414)
.+.... +-..+|+|+.
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd 134 (390)
T PRK07411 116 RLSSENALDILAPYDVVVD 134 (390)
T ss_pred ccCHHhHHHHHhCCCEEEE
Confidence 554422 1257999996
No 382
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.85 E-value=5.6 Score=38.90 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---c----ccccCCCc
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---V----EEVELPEK 130 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~----~~~~~~~~ 130 (414)
..++.+||..|+|. |..+..+|++ |..+|++++.++ ..+.+++. + . -.++... . ......+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-~---~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-A---TDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-C---cEEEcCCcchHHHHHHHHcCCCC
Confidence 34677888877753 6566666665 655789997764 44444432 1 1 1222221 1 11112246
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+++.. .+ . ...+....+.|+++|+++.
T Consensus 237 ~d~vld~-~g----~----~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 237 VDCVIEA-VG----F----EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CcEEEEc-cC----C----HHHHHHHHHHhhcCCEEEE
Confidence 9999852 11 1 1234555678899998863
No 383
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.77 E-value=18 Score=34.00 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.4
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
...+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999985 5 45677888899999999864
No 384
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.65 E-value=39 Score=31.10 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----C---
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-----P--- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~--- 128 (414)
.+++++|-.|+..|+ ++..+++.|. +|+++..+ + ..+.....+.. ...++.++.+|+.+... .
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEA---AGGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457889999975542 3333445576 58888765 2 33333333332 22457888899876431 0
Q ss_pred ---CceeEEEEcCCcccc----------CChhhHHHHHHHHHhccCCCeEEEc
Q 015038 129 ---EKADILISEPMGTLL----------VNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 ---~~fDvIis~~~~~~l----------~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.+|++|.+.-.... .+-.....+++.+.+.++.+|.++.
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 358988865422110 0111133556666666666666544
No 385
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.65 E-value=22 Score=30.40 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+..++.+.-...++++|+-+|||. | .++..+++.|...|+.+|.++ .++...+..... .+.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-----GIAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-----ccceeecchhhc--
Confidence 334454443335678999999974 2 233334444555799999883 433322222210 011122232222
Q ss_pred CCceeEEEEcCCcc
Q 015038 128 PEKADILISEPMGT 141 (414)
Q Consensus 128 ~~~fDvIis~~~~~ 141 (414)
-+.+|+|++..+..
T Consensus 79 ~~~~Dvvi~~~~~~ 92 (155)
T cd01065 79 LAEADLIINTTPVG 92 (155)
T ss_pred cccCCEEEeCcCCC
Confidence 25789999865543
No 386
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.61 E-value=12 Score=33.96 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=49.9
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH-HHHHHHHH------------HHhCCCCCCcEEEEEcccccccCCCc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE-MAEYARKL------------IAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~------------~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+|--+|.|- | .++..+|+.|. +|+|+|+++ .++..++- ++++. -..++.+. .|..+. ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~~a--i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIEEA--IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHHHH--HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhhhh--hhc
Confidence 566788886 5 45666777787 699999995 44332211 11000 01223332 122211 135
Q ss_pred eeEEEEcCCc----cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMG----TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~----~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.|+++...+. ....+-..+...++.+.+.|+++..++..+
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 7877753321 122234557888899999999977766553
No 387
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=74.99 E-value=4.8 Score=39.48 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=50.0
Q ss_pred CEEEEECC--CccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------CCCceeEE
Q 015038 65 RVVVDVGA--GSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------LPEKADIL 134 (414)
Q Consensus 65 ~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------~~~~fDvI 134 (414)
.+||-.|+ |.|..+..+|++ |+.+|++++.++ ..+.+++.+ + .. .++..+-.++. .++.+|+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---G-a~---~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---G-FD---AAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---C-Cc---EEEECCCCCHHHHHHHHCCCCceEE
Confidence 78998886 347777777776 765799998874 445444422 2 21 12222111110 12469999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.. .+ .. . +....+.|+++|.++.
T Consensus 229 id~-~g----~~----~-~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 229 FDN-VG----GE----I-SDTVISQMNENSHIIL 252 (345)
T ss_pred EEC-CC----cH----H-HHHHHHHhccCCEEEE
Confidence 842 22 11 1 2344578999999874
No 388
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.97 E-value=40 Score=31.60 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=44.9
Q ss_pred CCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+. +..++.++.+|+.+...
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAAS------LGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH------hCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999997665 23455566687 699999874 33222221 22468888999876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 77 ~~g~id~lv~~a 88 (261)
T PRK08265 77 RFGRVDILVNLA 88 (261)
T ss_pred HhCCCCEEEECC
Confidence 13689998764
No 389
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=74.96 E-value=9.2 Score=37.68 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=51.6
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc----ccccCCCce
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV----EEVELPEKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~----~~~~~~~~f 131 (414)
....++.+||-.|+|. |.++..+|+. |+.+|++++.+ +..+.+++. + ...-+.....+. .+......+
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----g-a~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----G-ATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C-CCEEECCCccCHHHHHHHHhCCCCC
Confidence 3445678888888753 5555555554 77679999887 455555432 2 111111111111 111111349
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+++-.. + . ...+....+.|+++|.++.
T Consensus 243 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 243 DVSFDCA-G----V----QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CEEEECC-C----C----HHHHHHHHHhccCCCEEEE
Confidence 9998521 1 1 1233455678999998764
No 390
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.33 E-value=44 Score=31.43 Aligned_cols=73 Identities=30% Similarity=0.347 Sum_probs=44.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.+....+.+... ..++.++..|+.+...
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQA---GPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999975432 3344555677 59999987 3433333333322 2356788888876420
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 83 ~~~~iD~vi~~a 94 (264)
T PRK07576 83 EFGPIDVLVSGA 94 (264)
T ss_pred HcCCCCEEEECC
Confidence 13579999754
No 391
>PRK08223 hypothetical protein; Validated
Probab=73.90 E-value=9.6 Score=37.08 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--HH------------------HHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--EM------------------AEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~~------------------~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
+..+||-+|||- | ..+..++++|..+++.+|.+ +. ++.|++.+.+-+ ..-+|+.+..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPE 104 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEec
Confidence 567899999995 4 56788888999999988864 11 223444444322 2334555555
Q ss_pred ccccccC---CCceeEEEE
Q 015038 121 KVEEVEL---PEKADILIS 136 (414)
Q Consensus 121 d~~~~~~---~~~fDvIis 136 (414)
.+.+-.. -..+|+|+.
T Consensus 105 ~l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVD 123 (287)
T ss_pred ccCccCHHHHHhCCCEEEE
Confidence 4443221 147899984
No 392
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=73.73 E-value=21 Score=36.00 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999995 4 45667778899899998875
No 393
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.68 E-value=30 Score=34.43 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HH-HHHHHHHHhCCCCCCcEEEEEc-cccccc-CCCceeEEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MA-EYARKLIAGNPSLGERITVIKG-KVEEVE-LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~-~~a~~~~~~n~~l~~~i~vi~~-d~~~~~-~~~~fDvIi 135 (414)
.++.+||-.|+|. |.++..+|++ |+ +|++++.++ .. +.+++ .+ . -.++.. +...+. ..+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~----~G-a---~~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR----LG-A---DSFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh----CC-C---cEEEcCCCHHHHHhhcCCCCEEE
Confidence 4678888899875 7777777776 66 588888763 22 22222 22 1 112211 111111 113589888
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
- ..+ . ...+....+.|+++|.++.
T Consensus 253 d-~~g----~----~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 253 D-TVS----A----VHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred E-CCC----C----HHHHHHHHHHhcCCcEEEE
Confidence 4 222 1 1123445678999999874
No 394
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.57 E-value=32 Score=34.11 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=53.5
Q ss_pred cCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc----cccc-c-c-C
Q 015038 59 RADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG----KVEE-V-E-L 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~----d~~~-~-~-~ 127 (414)
....++.+||-.|+ | .|.++..+|++ |+ +|++++.++ ..+.+++. .+ .. .++.. +..+ + . .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lG-a~---~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LG-FD---EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cC-CC---EEEECCCcccHHHHHHHHC
Confidence 34567889999998 4 47777777776 66 699998874 55544422 12 11 22221 1111 1 0 1
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++.+|+|+-. .+ . ..+....+.|+++|.++.
T Consensus 226 ~~gvD~v~d~-vG----~-----~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 226 PEGIDIYFDN-VG----G-----DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CCCcEEEEEC-CC----H-----HHHHHHHHHhccCCEEEE
Confidence 2468999842 22 1 123445678999999874
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.56 E-value=29 Score=33.48 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=56.9
Q ss_pred CEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC-------CCCC--------CcEEEEEccccccc
Q 015038 65 RVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN-------PSLG--------ERITVIKGKVEEVE 126 (414)
Q Consensus 65 ~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n-------~~l~--------~~i~vi~~d~~~~~ 126 (414)
++|.=||+|. | .++..++++|. .|+..|.+ +.++.+.+.+..+ +.+. .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 5688899996 3 45666777777 59999998 4555544332211 1111 123322 233221
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
...|+|+...+. +......++..+...++++.+++-+..+
T Consensus 82 --~~aD~Vieavpe----~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAATE----DETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcCcC----CHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 468999863221 2223456677788889998877533333
No 396
>PRK08589 short chain dehydrogenase; Validated
Probab=73.52 E-value=25 Score=33.32 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.++.++...+.+... ..++.++..|+.+...
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSN---GGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhc---CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 467899999987763 3445566677 699999884333333333332 2468888888876421
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 80 ~g~id~li~~A 90 (272)
T PRK08589 80 FGRVDVLFNNA 90 (272)
T ss_pred cCCcCEEEECC
Confidence 14689999764
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.15 E-value=12 Score=36.17 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=55.7
Q ss_pred CEEEEECCCc--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh-------CCCCC--------CcEEEEEccccccc
Q 015038 65 RVVVDVGAGS--GILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG-------NPSLG--------ERITVIKGKVEEVE 126 (414)
Q Consensus 65 ~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~-------n~~l~--------~~i~vi~~d~~~~~ 126 (414)
++|--||+|+ +.++..++.+|. .|+..|.+ +.++.+++.+.+ .+.+. .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 3788899996 356677778887 69999998 466655544322 11110 12222 2333221
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhcc-CCCeEEEc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFL-VPMGKMFP 168 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~lip 168 (414)
...|+|+-.. ..+...-..++..+.+.+ +|+.++.-
T Consensus 83 --~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 --ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred --CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4689998532 223333456677778887 67766643
No 398
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.07 E-value=7.6 Score=37.19 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~ 139 (414)
..++....|+|+-.|..+..+.+.+- .|++||--+|+...- . ...|+-...|...+.+ +.+.|-.+|+.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----d----tg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----D----TGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----c----ccceeeeeccCcccccCCCCCceEEeehh
Confidence 35688999999999999999999877 699999888764321 1 2468888889888876 578999999754
Q ss_pred ccccCChhhHHHHHHHHHhccCCC
Q 015038 140 GTLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
.. +..+-.-+..+|..|
T Consensus 280 Ek-------P~rv~~li~~Wl~nG 296 (358)
T COG2933 280 EK-------PARVAALIAKWLVNG 296 (358)
T ss_pred cC-------cHHHHHHHHHHHHcc
Confidence 21 233333445666544
No 399
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.03 E-value=25 Score=32.79 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-------CCCc
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-------LPEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-------~~~~ 130 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+...+... ...++.++..|+.+.. .-++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAA--HGVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHhCC
Confidence 457899999986652 3444556688 79999987 4454444444332 2346788888887642 1147
Q ss_pred eeEEEEcC
Q 015038 131 ADILISEP 138 (414)
Q Consensus 131 fDvIis~~ 138 (414)
.|++|.+.
T Consensus 82 id~lv~~a 89 (259)
T PRK06125 82 IDILVNNA 89 (259)
T ss_pred CCEEEECC
Confidence 89998764
No 400
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.01 E-value=37 Score=32.80 Aligned_cols=94 Identities=23% Similarity=0.237 Sum_probs=52.9
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-----ccCCC
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-----VELPE 129 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-----~~~~~ 129 (414)
.....++.+||.+|+|. |..+..++++ |.++|++++.+ +..+.+++. + .. .++..+-.+ ....+
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----G-AT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C-Ce---EEecCCCCCHHHHHHhcCC
Confidence 34445778999998753 5555556665 66558889887 455554332 1 11 233222111 11225
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++... + . ...+....+.|+++|.++.
T Consensus 226 ~vd~v~~~~-~----~----~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 226 GFDVVIEAT-G----V----PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CCcEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 699999531 1 1 1233445678899998864
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=72.75 E-value=10 Score=38.20 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH
Q 015038 63 IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE 96 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~ 96 (414)
++.+|+-+|+|. |..+...++. |+ +|+++|.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 567799999985 6655555543 77 699999984
No 402
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.55 E-value=34 Score=33.71 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=44.6
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--H------------------HHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--E------------------MAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~------------------~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+||-+|||. | .++..++..|.++++.+|.+ + -++.|.+.+.+.+ ..-+|+....++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANIK 79 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccCC
Confidence 478899984 4 45667777899999998854 1 1234444444422 2345666666666
Q ss_pred ccc----CCCceeEEEEc
Q 015038 124 EVE----LPEKADILISE 137 (414)
Q Consensus 124 ~~~----~~~~fDvIis~ 137 (414)
+.. +-..||+|++.
T Consensus 80 ~~~~~~~f~~~~DvVv~a 97 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNA 97 (312)
T ss_pred CccchHHHHhcCCEEEEC
Confidence 421 12579999973
No 403
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.51 E-value=36 Score=32.65 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=56.3
Q ss_pred EEEEECCCc--cHHHHHHHHcCCCeEEEEeChH-HHHHHHHHH-------HhCCCCC--------CcEEEEEcccccccC
Q 015038 66 VVVDVGAGS--GILSLFAAQAGAKHVYAVEASE-MAEYARKLI-------AGNPSLG--------ERITVIKGKVEEVEL 127 (414)
Q Consensus 66 ~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~-------~~n~~l~--------~~i~vi~~d~~~~~~ 127 (414)
+|.-||+|. +.++..++++|. +|+++|.++ .++.+++.+ .+.+.+. .++++. .|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 578899996 466777777787 699999984 555444322 2222111 123322 23322
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
-+..|+|+-..+ .+......++..+.+.++|+.++.-...
T Consensus 80 ~~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 LKDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred hccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 246899885322 1122235778888889999887744333
No 404
>PRK06128 oxidoreductase; Provisional
Probab=72.42 E-value=43 Score=32.24 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH---HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE---MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~---~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.++++||-.|++.|+ ++..+++.|+ +|+.+..+. .++...+.+... ..++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAE---GRKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHH
Confidence 457899999976653 3444556677 577665531 222233333332 3467888899876421
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 129 ~~~~g~iD~lV~nA 142 (300)
T PRK06128 129 VKELGGLDILVNIA 142 (300)
T ss_pred HHHhCCCCEEEECC
Confidence 13689999764
No 405
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.38 E-value=15 Score=36.29 Aligned_cols=97 Identities=24% Similarity=0.233 Sum_probs=54.1
Q ss_pred HhcCCCCCCEEEEECCCc--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cCC
Q 015038 57 ENRADFIGRVVVDVGAGS--GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----ELP 128 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt--G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~ 128 (414)
......++.+||-.|+.. |.+++.+|++ |+ .++++-.+ +-.+.+++. + -..-+.+...|+.+- ...
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----G-Ad~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----G-ADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----C-CCEEEcCCcccHHHHHHHHcCC
Confidence 334455688999998544 6778888876 66 45555554 434444432 2 222233334443322 122
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+|+|+-. + . ...+....+.|+++|.++..
T Consensus 210 ~gvDvv~D~-v-----G----~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 210 KGVDVVLDT-V-----G----GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCceEEEEC-C-----C----HHHHHHHHHHhccCCEEEEE
Confidence 469999952 1 1 22233445788999998653
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.07 E-value=14 Score=35.64 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=55.3
Q ss_pred CEEEEECCCc--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh-------CCCCC--------CcEEEEEccccccc
Q 015038 65 RVVVDVGAGS--GILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG-------NPSLG--------ERITVIKGKVEEVE 126 (414)
Q Consensus 65 ~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~-------n~~l~--------~~i~vi~~d~~~~~ 126 (414)
++|.-||+|. +.++..++++|. +|+.+|.+ +.++.+.+.... .+.+. .++++. .+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA-- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH--
Confidence 3688899985 345666777777 59999998 465555443211 11010 112222 22221
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.-...|+|+...+. +......++..+.+.++|+.++..+..+
T Consensus 78 ~~~~aD~Vi~avpe----~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 AVADADLVIEAVPE----KLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hhcCCCEEEEeccC----CHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 11468999964332 2222345667777888888766544433
No 407
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.96 E-value=52 Score=30.13 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|. +|++++.+ +.+....+.+.. ...++.++.+|+.+...
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 457889988875432 2333445576 58888877 344333333332 23468899999876431
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|+|+.+.
T Consensus 81 ~~~~id~vi~~a 92 (250)
T PRK12939 81 ALGGLDGLVNNA 92 (250)
T ss_pred HcCCCCEEEECC
Confidence 04689998753
No 408
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=71.95 E-value=6.7 Score=40.53 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--H------------------HHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--M------------------AEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--~------------------~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
++.+||-||||. | -|...++..|..+|..||++. . +..|++.+.... ..-++..+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn-pn~~l~~yha 89 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN-PNIKLVPYHA 89 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC-CCCceEeccc
Confidence 678999999985 5 456667777998899888641 1 223444444432 2346778888
Q ss_pred ccccccCC----CceeEEEE
Q 015038 121 KVEEVELP----EKADILIS 136 (414)
Q Consensus 121 d~~~~~~~----~~fDvIis 136 (414)
++.+...+ +.||+|+.
T Consensus 90 nI~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 90 NIKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred cccCcchHHHHHHHHHHHHH
Confidence 88876544 56888875
No 409
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.91 E-value=15 Score=36.07 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=52.8
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc----------ccc
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK----------VEE 124 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d----------~~~ 124 (414)
.....++.+||-.|+|. |..+..+|+. |++.|++++.+ +..+.+++. + .. .++..+ +.+
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g-~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----G-AT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C-Cc---EEeccccccchhHHHHHHH
Confidence 33456778888888765 5666666665 76558998877 455555442 1 11 122111 111
Q ss_pred ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
......+|+|+.. .+ . ...+....+.|+++|.++.
T Consensus 229 ~~~~~~~d~vld~-~g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 229 LLGGKGPDVVIEC-TG----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred HhCCCCCCEEEEC-CC----C----HHHHHHHHHHhhcCCEEEE
Confidence 2122459999852 11 1 1133455678999998863
No 410
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=71.90 E-value=13 Score=36.55 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc----cc--CCCceeE
Q 015038 63 IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE----VE--LPEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~----~~--~~~~fDv 133 (414)
++.+||-.|+|. |..+..+|++ |+++|++++.+ +....+++. + . -.++...-.+ +. .++.+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g-~---~~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----G-A---DVVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C-C---cEEecCCCccHHHHHHHHhCCCCcE
Confidence 677888888764 5666666665 77789999887 354444331 2 2 1222221111 10 1236899
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++.. .+ . ...+....+.|+++|.++.
T Consensus 247 vid~-~g----~----~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 247 VIDF-VN----N----SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EEEC-CC----C----HHHHHHHHHHhhcCCeEEE
Confidence 9852 11 1 1234455678899998873
No 411
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.83 E-value=11 Score=37.57 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=32.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
....++.+||-.|||. |.++..+|++ |+.+|+++|.++ .++.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3446788999999875 6677777775 776799999984 5566544
No 412
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.37 E-value=49 Score=30.17 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.+.+||-+|||. | ..+..+++.|.++++.+|-+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999995 3 45666778899999998854
No 413
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=71.17 E-value=21 Score=34.80 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=53.5
Q ss_pred CEEEEECCCc--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC----CcEEEEEcccccccCCCceeEEEEc
Q 015038 65 RVVVDVGAGS--GILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG----ERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 65 ~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~----~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.+|+-+|+|. |.++..++++|. .|+.++.+ +.++..++ .++ +. .....+..........+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~G-l~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGG-LTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCC-eEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 4799999997 567888888887 49999987 44443332 111 10 0111111101111112478988852
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.=. -.....+..+..++.++..+++-
T Consensus 78 vK~------~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKA------YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCH------HhHHHHHHHHHhhCCCCCEEEEE
Confidence 211 11456677788889998877654
No 414
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.16 E-value=30 Score=34.15 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
...++.+||-.|||. |.++..+|++ |+ +|++++.++ .++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 445688999999976 7777777766 66 699999884 5555544
No 415
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=71.00 E-value=16 Score=36.35 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=51.5
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc--c----cccccCCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG--K----VEEVELPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~--d----~~~~~~~~ 129 (414)
....++.+||-.|+|. |.++..+|++ |+..|++++.+ +..+.+++. + ...-+..... + +.+.. ++
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~~~l~~~~-~~ 252 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----G-ATECINPRDQDKPIVEVLTEMT-DG 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C-CCeecccccccchHHHHHHHHh-CC
Confidence 3445678888888764 5555556665 77678999876 455555432 1 1111111111 1 11111 34
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccC-CCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLV-PMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lk-pgG~lip 168 (414)
.+|+|+.. .+ . ...+....+.|+ ++|.++.
T Consensus 253 ~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 253 GVDYAFEV-IG----S----ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCcEEEEC-CC----C----HHHHHHHHHHhccCCCEEEE
Confidence 68999842 22 1 122334457788 9999874
No 416
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.86 E-value=59 Score=30.44 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCCEEEEECCCcc-HH----HHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAGSG-IL----SLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG-~l----s~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.+++++|-.|+++| .+ +..+++.|+ +|+.++.++ ..+.+++.... +. .+.++.+|+.+...
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEE---LD-APIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHh---hc-cceEEecCcCCHHHHHHHHHHH
Confidence 46889999998752 33 444556687 588888873 22323333222 11 24567788766420
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 83 ~~~~g~ld~lv~nA 96 (258)
T PRK07533 83 AEEWGRLDFLLHSI 96 (258)
T ss_pred HHHcCCCCEEEEcC
Confidence 14689999864
No 417
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=70.49 E-value=17 Score=35.56 Aligned_cols=92 Identities=28% Similarity=0.325 Sum_probs=50.7
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc------cccccCCCc
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK------VEEVELPEK 130 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d------~~~~~~~~~ 130 (414)
...++.+||-.|+|. |..+..+|++ |..+|++++.++ ..+.+++ .+ . ..++..+ +........
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g-~---~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LG-A---DDTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC-C---CEEecCccccHHHHHHHhCCCC
Confidence 345677898888765 5555556665 665599998773 4444432 22 1 1222211 111111235
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+++... .. ...+..+.+.|+++|.++.
T Consensus 228 ~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAA-----GS----PATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 99998531 11 1233455678899998764
No 418
>PRK07340 ornithine cyclodeaminase; Validated
Probab=70.46 E-value=28 Score=34.07 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCc-cHHHHHHH-H-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGS-GILSLFAA-Q-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a-~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
.||.+.-....+.+.....++|+-+|||. |..-+.+. . .+.++|+..+.+ +.++...+.+...+ +.+...+
T Consensus 107 ~RTaA~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-----~~~~~~~ 181 (304)
T PRK07340 107 RRTAAVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-----PTAEPLD 181 (304)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-----CeeEECC
Confidence 57777666666667666778999999996 44433333 2 466789999998 45544334343322 2333333
Q ss_pred cccccCCCceeEEEEcCC
Q 015038 122 VEEVELPEKADILISEPM 139 (414)
Q Consensus 122 ~~~~~~~~~fDvIis~~~ 139 (414)
.++. -...|+|++...
T Consensus 182 ~~~a--v~~aDiVitaT~ 197 (304)
T PRK07340 182 GEAI--PEAVDLVVTATT 197 (304)
T ss_pred HHHH--hhcCCEEEEccC
Confidence 4332 157999997543
No 419
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.81 E-value=0.77 Score=40.30 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++++|+|.++-+..++..+. ....++.+.|+|||||.+-+....
T Consensus 45 dns~d~iyaeHvlEHlt~~E-g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDE-GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CcchHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 36899999876655554433 456789999999999998655443
No 420
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=69.67 E-value=34 Score=32.14 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=51.6
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
...++.+||-.|+|. |..+..+|++ |..+|++++.+ +..+.+++. + ..+.+..... .......+|+|+.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g-~~~~~~~~~~---~~~~~~~~d~vl~ 165 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----G-PADPVAADTA---DEIGGRGADVVIE 165 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----C-CCccccccch---hhhcCCCCCEEEE
Confidence 345678888888875 6666666665 66559999987 455555542 1 1111111100 1112246899985
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
... . ...+....+.|+++|.++.
T Consensus 166 ~~~-----~----~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 ASG-----S----PSALETALRLLRDRGRVVL 188 (277)
T ss_pred ccC-----C----hHHHHHHHHHhcCCcEEEE
Confidence 211 1 1233445678999999863
No 421
>PRK06197 short chain dehydrogenase; Provisional
Probab=69.66 E-value=34 Score=33.00 Aligned_cols=76 Identities=26% Similarity=0.337 Sum_probs=46.6
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
..++++||-.|+..|+ ++..+++.|+ +|+++..+ +.++.+.+.+.... ...++.++.+|+.+...
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAAT-PGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCHHHHHHHHHHHH
Confidence 4577899988876543 3344455677 68888876 44443333333211 12468888999877531
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 91 ~~~~~iD~li~nA 103 (306)
T PRK06197 91 AAYPRIDLLINNA 103 (306)
T ss_pred hhCCCCCEEEECC
Confidence 13689999764
No 422
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=69.63 E-value=4.6 Score=34.17 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=34.7
Q ss_pred cEEEEEcccccc--cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 114 RITVIKGKVEEV--ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 114 ~i~vi~~d~~~~--~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
++++..+|+.+. .+...+|+|+.+.+...-..+---..++..+.++++|||.+.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 456777888764 234789999988754433222223678899999999999884
No 423
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=69.47 E-value=15 Score=36.38 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-------ccCCCce
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-------VELPEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-------~~~~~~f 131 (414)
.++.+||-.|+|. |.++..+++. |+.+|++++.+ +..+.+++. + . ..++..+-.+ ......+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g-~---~~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----G-A---THTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C-C---ceEecCCcccHHHHHHHHhCCCCC
Confidence 4677788777653 5555555554 66569999887 344544331 1 1 1222222111 1112469
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+|+... + .. ..+....+.|+++|.++-
T Consensus 258 d~vld~v-g----~~----~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 258 DVVVEAL-G----KP----ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CEEEEeC-C----CH----HHHHHHHHHHhcCCEEEE
Confidence 9998531 1 11 123445678999999864
No 424
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=69.43 E-value=11 Score=32.47 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=28.7
Q ss_pred EECCCcc--HHHHHHH--HcC-CCeEEEEeChH-HHHHHHHH--HHhCCCCCCcEEEEEccc
Q 015038 69 DVGAGSG--ILSLFAA--QAG-AKHVYAVEASE-MAEYARKL--IAGNPSLGERITVIKGKV 122 (414)
Q Consensus 69 DiGcGtG--~ls~~~a--~~g-~~~V~gvD~s~-~~~~a~~~--~~~n~~l~~~i~vi~~d~ 122 (414)
|||++.| .....++ ..+ ..+|+++|+++ ..+..+++ +..+. ....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEeec
Confidence 8999999 4444433 333 45799999995 66777777 55553 223355555443
No 425
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.21 E-value=19 Score=34.63 Aligned_cols=48 Identities=31% Similarity=0.390 Sum_probs=40.7
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN 108 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n 108 (414)
...++..|||.-+|+|..+..+.+.|- +.+|+|++ +.++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 456889999999999999999888876 69999999 5778888887654
No 426
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.13 E-value=27 Score=32.11 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=45.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++ .+..+.+.+... ..++.++..|+.+...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGAL---GTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999975542 2333445576 699999883 444444434332 3468888888765321
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
.+++|+||.+.
T Consensus 79 ~~~~id~vi~~a 90 (253)
T PRK08217 79 DFGQLNGLINNA 90 (253)
T ss_pred HcCCCCEEEECC
Confidence 13589999754
No 427
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.04 E-value=28 Score=32.44 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCCCEEEEECCCccHHHHH----HHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGILSLF----AAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~----~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.+++++|-.|+.. .++.. +++.|+ +|+.++.+ +.++...+.+... ..++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa~g-~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~---~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 10 LSGKTALVTGGSR-GLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEAL---GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4678999999644 44444 444577 69999987 4555555444432 3468889999886421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-+++|.||.+.
T Consensus 85 ~~~~~id~vi~~a 97 (259)
T PRK08213 85 ERFGHVDILVNNA 97 (259)
T ss_pred HHhCCCCEEEECC
Confidence 13689998764
No 428
>PRK07877 hypothetical protein; Provisional
Probab=68.92 E-value=18 Score=39.93 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCccH-HHHHHHHcCC-CeEEEEeCh--H-----------------HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 62 FIGRVVVDVGAGSGI-LSLFAAQAGA-KHVYAVEAS--E-----------------MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~-ls~~~a~~g~-~~V~gvD~s--~-----------------~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
.+..+|+-+|||-|. .+..++++|. .+++.+|.+ + -++.|++.+..-+ ..-+|+.+..
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in-p~i~v~~~~~ 183 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD-PYLPVEVFTD 183 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 356799999999875 4667788895 888888753 1 1233444444332 3346777776
Q ss_pred ccccccC---CCceeEEEE
Q 015038 121 KVEEVEL---PEKADILIS 136 (414)
Q Consensus 121 d~~~~~~---~~~fDvIis 136 (414)
.+..-.. -..+|+|+.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD 202 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVE 202 (722)
T ss_pred cCCHHHHHHHhcCCCEEEE
Confidence 6653222 146899996
No 429
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=68.72 E-value=21 Score=30.54 Aligned_cols=71 Identities=32% Similarity=0.362 Sum_probs=48.2
Q ss_pred CEEEEECCCccH---HHHHHHHcCCCeEEEEeCh---HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------C
Q 015038 65 RVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS---EMAEYARKLIAGNPSLGERITVIKGKVEEVE-----------L 127 (414)
Q Consensus 65 ~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s---~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----------~ 127 (414)
|+||-.|+++|+ ++..+++.|..+|+.+..+ +.+......+... ..++.++..|+.+.. .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP---GAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT---TSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 468888988763 4556666678789999887 3444444444432 368999999987642 1
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
.+.+|++|.+.
T Consensus 78 ~~~ld~li~~a 88 (167)
T PF00106_consen 78 FGPLDILINNA 88 (167)
T ss_dssp HSSESEEEEEC
T ss_pred ccccccccccc
Confidence 25799999754
No 430
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.63 E-value=29 Score=32.17 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.++++||-.|++.|+ ++..+++.|. +|++++.++ .++.+.+.+... ..++.++..|+.+...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDL---GRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHh---CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 356889999986653 3445556687 699999873 444444433332 2468889999876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|+||.+.
T Consensus 79 ~~g~~d~vi~~a 90 (258)
T PRK07890 79 RFGRVDALVNNA 90 (258)
T ss_pred HcCCccEEEECC
Confidence 14689998764
No 431
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.60 E-value=16 Score=36.35 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc-------cccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE-------EVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~-------~~~~~~ 129 (414)
...++.+||-.|+|. |..+..++++ |+.+|++++.++ ..+.+++ .+ . ..++..+-. .+....
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g-~---~~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FG-A---THTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hC-C---eEEeCCCCccHHHHHHHHcCCC
Confidence 345678888888753 5555556665 765699988873 4444432 11 1 122222111 111124
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++...- . ...+....+.|+++|+++.
T Consensus 251 ~vd~vld~~~-----~----~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 251 GADYAFEAVG-----R----AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCEEEEcCC-----C----hHHHHHHHHHhhcCCeEEE
Confidence 6999885211 1 1233455678999998864
No 432
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=68.51 E-value=23 Score=37.23 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCCEEEEECCCccHHHHHHHHc---C--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccC--CCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA---G--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VEL--PEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~---g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~--~~~fDv 133 (414)
++..|.|..||+|.+.....+. | ...++|-|.. .+...|+.++.-++...+......+|... ... ..+||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4568999999999887655432 2 2469999999 58888888765443112333443444322 111 246999
Q ss_pred EEEcCCcc
Q 015038 134 LISEPMGT 141 (414)
Q Consensus 134 Iis~~~~~ 141 (414)
|+++++..
T Consensus 297 v~~NpPf~ 304 (501)
T TIGR00497 297 VVSNPPYS 304 (501)
T ss_pred EeecCCcc
Confidence 99998754
No 433
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.35 E-value=30 Score=32.25 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
.+++++|-.|+++|+ ++..+++.|+ +|++++.++. +.+.+.+.. ...++.++..|+.+...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~-~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA-PETQAQVEA---LGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH-HHHHHHHHH---cCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 467899999988763 3455566687 5888876532 222223332 23568888999877521
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 81 ~g~iD~lv~~a 91 (251)
T PRK12481 81 MGHIDILINNA 91 (251)
T ss_pred cCCCCEEEECC
Confidence 14689999764
No 434
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=20 Score=35.11 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHhcCCC-CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh
Q 015038 45 YVRTGTYYAAVIENRADF-IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS 95 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~-~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s 95 (414)
+.|+.....++...+... ..+.|+.+|||.-.+...+...+ ..++--+|++
T Consensus 68 ~~R~~aI~~~v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievD 120 (335)
T KOG2918|consen 68 WARTMAIRHAVRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVD 120 (335)
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEec
Confidence 456655555555555443 34589999999998888887765 4455555655
No 435
>PRK12937 short chain dehydrogenase; Provisional
Probab=68.23 E-value=79 Score=28.86 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=43.3
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.++++||-.|++.|+ ++..+++.|. +|+.+..+ + ..+...+.... ...++.++..|+.+...
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEA---AGGRAIAVQADVADAAAVTRLFDAAE 78 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 457889999986542 3444555677 46666543 2 33333333333 23568889999876421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
.++.|+++.+.
T Consensus 79 ~~~~~id~vi~~a 91 (245)
T PRK12937 79 TAFGRIDVLVNNA 91 (245)
T ss_pred HHcCCCCEEEECC
Confidence 13689998754
No 436
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.12 E-value=18 Score=35.34 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCEEEEECCCc--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCC-----CcEEEEEcccc-cccCCCceeEEE
Q 015038 64 GRVVVDVGAGS--GILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLG-----ERITVIKGKVE-EVELPEKADILI 135 (414)
Q Consensus 64 ~~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~-----~~i~vi~~d~~-~~~~~~~fDvIi 135 (414)
..+|+-||+|. |.++..++++|. .|+.+..++. +. +..++ +. ....+....+. ..+..+.+|+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-~~----~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-EA----VRENG-LQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-HH----HHhCC-eEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 46899999996 567778888886 5888877641 11 22222 10 11111100010 111125789988
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+. ...++..+..++++++.+++-
T Consensus 78 lavK~~~------~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 78 VGLKTTA------NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEecCCC------hHhHHHHHhhhcCCCCEEEEe
Confidence 6433222 345566677788898877643
No 437
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.93 E-value=38 Score=32.66 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=54.2
Q ss_pred CEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC----------CCC--------CCcEEEEEcccc
Q 015038 65 RVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN----------PSL--------GERITVIKGKVE 123 (414)
Q Consensus 65 ~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n----------~~l--------~~~i~vi~~d~~ 123 (414)
++|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++.+... +.. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 4 56667777787 69999998 4666554433221 100 0112221 1221
Q ss_pred cccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 124 EVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 124 ~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. -...|+|+...+. .......++..+.+.++|+.+++
T Consensus 82 ~---~~~aDlVieav~e----~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---LSDADFIVEAVPE----KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---hCCCCEEEEcCcC----cHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1457988863321 22224667777888888887654
No 438
>PRK07063 short chain dehydrogenase; Provisional
Probab=67.88 E-value=30 Score=32.23 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+.... ...++.++.+|+.+...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDV-AGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999987653 3455556687 59999987 44444444443311 23568889999876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+.+|++|.+.
T Consensus 83 ~~g~id~li~~a 94 (260)
T PRK07063 83 AFGPLDVLVNNA 94 (260)
T ss_pred HhCCCcEEEECC
Confidence 14689998753
No 439
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=67.80 E-value=29 Score=28.04 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=45.0
Q ss_pred CCccHHHHHHHHc---CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----C-CceeEEEEcCCccc
Q 015038 72 AGSGILSLFAAQA---GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----P-EKADILISEPMGTL 142 (414)
Q Consensus 72 cGtG~ls~~~a~~---g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~-~~fDvIis~~~~~~ 142 (414)
||.|.++..+++. +...|+.+|.++ .++.++. .+ +.++.+|..+... . +++|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDATDPEVLERAGIEKADAVVILTD--- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc-----cccccccchhhhHHhhcCccccCEEEEccC---
Confidence 3445555555543 444799999995 5444443 21 6799999987531 1 57888886321
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEE
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+.. ....+-...|-+.|...++
T Consensus 72 --~d~-~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 72 --DDE-ENLLIALLARELNPDIRII 93 (116)
T ss_dssp --SHH-HHHHHHHHHHHHTTTSEEE
T ss_pred --CHH-HHHHHHHHHHHHCCCCeEE
Confidence 221 2222223345567776664
No 440
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=67.78 E-value=36 Score=31.69 Aligned_cols=73 Identities=32% Similarity=0.429 Sum_probs=46.3
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++......+.+... ..++.++.+|+.+...
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAA---GGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhc---CCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 467899999987653 4455566677 699999875333333333322 2457788888876421
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-+.+|++|.+.
T Consensus 82 ~~~id~lv~nA 92 (260)
T PRK12823 82 FGRIDVLINNV 92 (260)
T ss_pred cCCCeEEEECC
Confidence 14689998764
No 441
>PRK10083 putative oxidoreductase; Provisional
Probab=67.69 E-value=32 Score=33.50 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHH-c-CCCeEEEEeChH-HHHHHHH
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQ-A-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~-~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
...++.+||-.|+|. |..+..+++ . |+..+++++.++ ..+.+++
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 445678999999764 566666676 3 887799999874 4444443
No 442
>PRK08339 short chain dehydrogenase; Provisional
Probab=67.57 E-value=30 Score=32.65 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+... ...++.++.+|+.+...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 467899999988764 4556666787 59999987 4444444433321 12468888999876421
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 83 ~g~iD~lv~na 93 (263)
T PRK08339 83 IGEPDIFFFST 93 (263)
T ss_pred hCCCcEEEECC
Confidence 14689988753
No 443
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=67.44 E-value=42 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
..+.+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999995 5 45677788898899999975
No 444
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=67.32 E-value=7.2 Score=40.36 Aligned_cols=91 Identities=24% Similarity=0.293 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCc-cHH-HHHHHHcCCCeEE-----EEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 62 FIGRVVVDVGAGS-GIL-SLFAAQAGAKHVY-----AVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~l-s~~~a~~g~~~V~-----gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
.++++|+-||||+ |.. ++-+...|...++ +||.+ +..+. +...+ + .+ .++.+. -.+.|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~k----A~~dG-F----~v--~~~~Ea--~~~ADv 100 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRK----ATENG-F----KV--GTYEEL--IPQADL 100 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHH----HHhcC-C----cc--CCHHHH--HHhCCE
Confidence 5789999999998 541 1111112443332 33333 22222 22233 2 11 233322 257899
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+.-.+. +. ...+...+...||||..|.++.+
T Consensus 101 VviLlPD-----t~-q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 101 VINLTPD-----KQ-HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred EEEcCCh-----HH-HHHHHHHHHhhCCCCCEEEecCC
Confidence 9984443 32 34555888899999999988764
No 445
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=24 Score=34.78 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=45.3
Q ss_pred CCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--H------------------HHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 64 GRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--M------------------AEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 64 ~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--~------------------~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
+.+||-||+|. | -+..-+|-.|...+..||++. . ++.|.+.+...- .+-.|....++
T Consensus 40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rv-p~~~v~~h~~k 118 (422)
T KOG2015|consen 40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRV-PGCVVVPHRQK 118 (422)
T ss_pred hCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhC-CCcEEeeeecc
Confidence 36899999985 4 344455556887777777641 1 233333333221 22346777888
Q ss_pred cccccCC--CceeEEEEc
Q 015038 122 VEEVELP--EKADILISE 137 (414)
Q Consensus 122 ~~~~~~~--~~fDvIis~ 137 (414)
+++.+.. .+||+|+|.
T Consensus 119 Iqd~~~~FYk~F~~iicG 136 (422)
T KOG2015|consen 119 IQDKPISFYKRFDLIICG 136 (422)
T ss_pred hhcCCHHHHhhhceEEec
Confidence 8887654 789999984
No 446
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=66.88 E-value=7.9 Score=39.91 Aligned_cols=109 Identities=16% Similarity=0.017 Sum_probs=59.0
Q ss_pred CCCCCCEEEEECCCccHHHHHHHH--cC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCce
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQ--AG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKA 131 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~--~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~f 131 (414)
..+....++|+|.|.|.-.-.+.. .+ ...++.||.| +|........+... -...+.+-.--+.+..+ ...|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccce
Confidence 445567788998887643333222 22 4578999999 68887777765411 00111111101111111 2459
Q ss_pred eEEEEcCCccccCChhh-HHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERM-LETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|++.-..+.+.+... +.....-+.+..++|+.+++-
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99998655444433222 233333455677888887643
No 447
>PRK07985 oxidoreductase; Provisional
Probab=66.75 E-value=40 Score=32.40 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=45.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh---HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS---EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s---~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+..... ..++.++.+|+.+...
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEEC---GRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHc---CCeEEEEEccCCCHHHHHHHHHHH
Confidence 567899999976653 4555666687 58877653 2233333333332 2457788888876421
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-++.|+++.+.
T Consensus 123 ~~~~g~id~lv~~A 136 (294)
T PRK07985 123 HKALGGLDIMALVA 136 (294)
T ss_pred HHHhCCCCEEEECC
Confidence 14679988753
No 448
>PRK05866 short chain dehydrogenase; Provisional
Probab=66.65 E-value=39 Score=32.52 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
..+++||-.|++.|+ ++..+++.|. +|++++.+ +.++...+.+... ..++.++.+|+.+...
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRA---GGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356889999987653 3444555576 69999988 4444443333332 2457888898876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+..|++|.+.
T Consensus 114 ~~g~id~li~~A 125 (293)
T PRK05866 114 RIGGVDILINNA 125 (293)
T ss_pred HcCCCCEEEECC
Confidence 13689999753
No 449
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=66.49 E-value=45 Score=33.41 Aligned_cols=96 Identities=28% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---c----cccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---K----VEEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d----~~~~~~~~ 129 (414)
...++.+||-.|+|. |..++.+|++ |+.+|++++.++ ..+.+++ .+ ...-+..... + +.++....
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MG-ADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcccccccccHHHHHHHhcCCC
Confidence 345677888888764 5555555655 766799998874 3333333 22 2111111100 1 11122224
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+.. .+ + ....+....+.|+++|+++.
T Consensus 275 gvDvvld~-~g----~---~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 275 GADIQVEA-AG----A---PPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCCEEEEC-CC----C---cHHHHHHHHHHHHcCCEEEE
Confidence 69999852 22 1 11233445577889999864
No 450
>PLN02702 L-idonate 5-dehydrogenase
Probab=66.35 E-value=62 Score=31.99 Aligned_cols=96 Identities=22% Similarity=0.242 Sum_probs=51.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEE--Eccccc----c--cC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVI--KGKVEE----V--EL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi--~~d~~~----~--~~ 127 (414)
....++.+||-+|+|. |..+..++++ |+..|++++.++ ..+.+++. + ....+.+- ..+..+ + ..
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----G-ADEIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C-CCEEEecCcccccHHHHHHHHhhhc
Confidence 3445678888888763 5556666664 777789999874 44444432 1 11111110 011111 1 11
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+.+|+|+.. .+ .. ..+....+.|+++|.++.
T Consensus 252 ~~~~d~vid~-~g----~~----~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 252 GGGIDVSFDC-VG----FN----KTMSTALEATRAGGKVCL 283 (364)
T ss_pred CCCCCEEEEC-CC----CH----HHHHHHHHHHhcCCEEEE
Confidence 2468998852 11 11 123455678999998763
No 451
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=66.16 E-value=29 Score=35.28 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
...+||-+|||. | ..+..++++|.++++.+|.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 467899999996 4 45677888899999988854
No 452
>PLN02256 arogenate dehydrogenase
Probab=65.95 E-value=44 Score=32.77 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHhcCCCCCCEEEEECCCc--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRADFIGRVVVDVGAGS--GILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+.+.....+..+|.=||+|. |.++..+.+.|. +|+++|.++..+.++ ..+ +.. ..+..+.. ....|
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~~~~a~----~~g-----v~~-~~~~~e~~-~~~aD 94 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDYSDIAA----ELG-----VSF-FRDPDDFC-EEHPD 94 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccHHHHHH----HcC-----Cee-eCCHHHHh-hCCCC
Confidence 33444445667899999885 345566666665 699999985222222 222 222 22333321 13579
Q ss_pred EEEEcCCccccCChhhHHHHHHHH-HhccCCCeEEEcccce
Q 015038 133 ILISEPMGTLLVNERMLETYVIAR-DRFLVPMGKMFPSVGR 172 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~-~r~LkpgG~lip~~~~ 172 (414)
+|+...+. .....++..+ ...++++. ++.+.++
T Consensus 95 vVilavp~------~~~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 95 VVLLCTSI------LSTEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred EEEEecCH------HHHHHHHHhhhhhccCCCC-EEEecCC
Confidence 88853321 2345566665 45577765 4444444
No 453
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=65.80 E-value=44 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=28.3
Q ss_pred CCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEE
Q 015038 293 TTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLT 334 (414)
Q Consensus 293 ~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~ 334 (414)
....++.+.-+.-|-.++.||++.+.+.+..+..+..++.++
T Consensus 50 ~~v~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V~ 91 (92)
T PF00207_consen 50 ITVFKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTVT 91 (92)
T ss_dssp EEEB-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEEE
T ss_pred EEEEeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEEE
Confidence 455677777788899999999999999988665555555554
No 454
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=65.67 E-value=24 Score=34.48 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=49.9
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc----ccccCCCceeE
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV----EEVELPEKADI 133 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~----~~~~~~~~fDv 133 (414)
..++.+||-.|+|. |..+..+++. |..+|++++.++ ....+++. + ...-+.....+. .+......+|+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----G-ATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C-CCceeccccccHHHHHHHHhCCCCCCE
Confidence 35677777777753 4455555554 646799998874 43444431 2 211112111111 11112246999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++... .. ...+..+.+.|+++|.++.
T Consensus 239 vld~~-----g~----~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 239 VIEAV-----GI----PATFELCQELVAPGGHIAN 264 (345)
T ss_pred EEECC-----CC----HHHHHHHHHhccCCcEEEE
Confidence 98532 11 1234555688999999864
No 455
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=65.62 E-value=47 Score=31.92 Aligned_cols=77 Identities=30% Similarity=0.400 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
.+.++++|--|.++|+ .+..+++.|+ +|+..+.+ +.++.+.+.....+.-..++..+.+|+.+.+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3678999999998874 4677888898 58888887 5554444444333323467888999987532
Q ss_pred --CCCceeEEEEcC
Q 015038 127 --LPEKADILISEP 138 (414)
Q Consensus 127 --~~~~fDvIis~~ 138 (414)
..++.|+++.+.
T Consensus 84 ~~~~GkidiLvnna 97 (270)
T KOG0725|consen 84 EKFFGKIDILVNNA 97 (270)
T ss_pred HHhCCCCCEEEEcC
Confidence 136799999764
No 456
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.46 E-value=49 Score=31.85 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=54.1
Q ss_pred CEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh-------CCCCC---------CcEEEEEcccccc
Q 015038 65 RVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG-------NPSLG---------ERITVIKGKVEEV 125 (414)
Q Consensus 65 ~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~-------n~~l~---------~~i~vi~~d~~~~ 125 (414)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.+.. .+.+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 2 45666667776 69999998 455655544221 10010 123322 233221
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
-...|+||...+. +......++..+.+.++++.++.
T Consensus 82 --~~~aDlVieavpe----~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 --VKDADLVIEAVPE----DPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --hcCCCEEEEeccC----CHHHHHHHHHHHHhhCCCCCEEE
Confidence 1467999864331 22234666777878887776553
No 457
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.35 E-value=35 Score=31.63 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-+..+.+.+.. ...++.++.+|+.+...
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999986653 3444556676 69999987 344444444443 23568899999876420
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|+||.+.
T Consensus 81 ~~g~id~li~~a 92 (253)
T PRK06172 81 AYGRLDYAFNNA 92 (253)
T ss_pred HhCCCCEEEECC
Confidence 13679999764
No 458
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.30 E-value=42 Score=32.53 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS--EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s--~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~---g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAA---GAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3578899999998764 4555666787 58888874 2343333333332 3468888999876421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 85 ~~~g~iD~li~nA 97 (306)
T PRK07792 85 VGLGGLDIVVNNA 97 (306)
T ss_pred HHhCCCCEEEECC
Confidence 14689999763
No 459
>PRK08303 short chain dehydrogenase; Provisional
Probab=65.00 E-value=41 Score=32.72 Aligned_cols=73 Identities=26% Similarity=0.347 Sum_probs=46.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-----------HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-----------MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-----------~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+. .++.+.+.+... ..++.++.+|+.+...
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAA---GGRGIAVQVDHLVPEQ 81 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhc---CCceEEEEcCCCCHHH
Confidence 467899999988763 3444556677 688887651 222233333332 2457788888876421
Q ss_pred -----------CCceeEEEEcC
Q 015038 128 -----------PEKADILISEP 138 (414)
Q Consensus 128 -----------~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 14689999875
No 460
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=64.91 E-value=70 Score=30.92 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=52.8
Q ss_pred hcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc----ccccc---c
Q 015038 58 NRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG----KVEEV---E 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~----d~~~~---~ 126 (414)
.....++.+||-.|+ | .|.++..+|+. |+ +|++++.+ +..+.+++ .+ . + .++.. +..+. .
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LG-F-D--VAFNYKTVKSLEETLKKA 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cC-C-C--EEEeccccccHHHHHHHh
Confidence 344567889999985 3 47777777776 66 69998887 45555543 22 2 1 12221 11111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.++.+|+|+- ..+ . . .+....+.|+++|+++.
T Consensus 204 ~~~gvdvv~d-~~G----~----~-~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 204 SPDGYDCYFD-NVG----G----E-FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCCCeEEEEE-CCC----H----H-HHHHHHHHhCcCcEEEE
Confidence 1246999984 222 1 1 12445578999999874
No 461
>PRK06139 short chain dehydrogenase; Provisional
Probab=64.77 E-value=39 Score=33.35 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.++++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+... ..++.++..|+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRAL---GAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 467899999987653 3445566687 59999987 4554444444433 245778888887642
Q ss_pred CCCceeEEEEcC
Q 015038 127 LPEKADILISEP 138 (414)
Q Consensus 127 ~~~~fDvIis~~ 138 (414)
..+++|++|.+.
T Consensus 81 ~~g~iD~lVnnA 92 (330)
T PRK06139 81 FGGRIDVWVNNV 92 (330)
T ss_pred hcCCCCEEEECC
Confidence 114689999764
No 462
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.52 E-value=34 Score=31.74 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|+++|+ ++..+++.|+ +|++++.+ +.++.....+... ..++.++.+|+.+...
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTS---GGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999987763 3455566687 59999987 4444444444432 2467888888876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 83 ~~g~id~lv~~a 94 (253)
T PRK05867 83 ELGGIDIAVCNA 94 (253)
T ss_pred HhCCCCEEEECC
Confidence 14789999764
No 463
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=64.38 E-value=30 Score=30.72 Aligned_cols=91 Identities=25% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
++++|.-||.|+ | ..++-+...|..-++|.-... ..+.|+ +.+ + ++ .++.+. -...|+|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~----~~G-f----~v--~~~~eA--v~~aDvV~~--- 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK----ADG-F----EV--MSVAEA--VKKADVVML--- 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH----HTT------EC--CEHHHH--HHC-SEEEE---
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH----HCC-C----ee--ccHHHH--HhhCCEEEE---
Confidence 678999999997 4 234555556775344544433 444444 343 2 22 222222 146899986
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++++...+-+-..+...|+||-.+++..+
T Consensus 67 --L~PD~~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 67 --LLPDEVQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp ---S-HHHHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred --eCChHHHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 334444444444788889999999987653
No 464
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=64.17 E-value=28 Score=29.63 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=50.1
Q ss_pred EEEECCCc-c-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcc----------cccc-cCCCceeE
Q 015038 67 VVDVGAGS-G-ILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK----------VEEV-ELPEKADI 133 (414)
Q Consensus 67 VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d----------~~~~-~~~~~fDv 133 (414)
|+-+|+|. | .++..++++|. .|+.+..++.++..++ ++ +++...+ .... ...+.+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~~~~----~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEAIKE----QG-----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHHHHH----HC-----EEEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHhhhh----ee-----EEEEecccceecccccccCcchhccCCCcE
Confidence 56688886 4 44555666666 6999999873332221 21 2222222 1111 12267999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+...- ....+..+..+.++++++..+++.
T Consensus 71 viv~vK------a~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 71 VIVAVK------AYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEE-SS------GGGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEec------ccchHHHHHHHhhccCCCcEEEEE
Confidence 996321 222577788899999999776543
No 465
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=63.97 E-value=22 Score=34.82 Aligned_cols=93 Identities=25% Similarity=0.316 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc---ccccCCCceeEEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV---EEVELPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~---~~~~~~~~fDvIi 135 (414)
.++.+||-.|+|. |.++..++++ |..+|++++.++ -...+++ .+ ...-+.....+. .+....+.+|+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MG-ADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hC-cceeeCcccccHHHHHHHcCCCCCCEEE
Confidence 4677787777754 5566666665 665788886653 3333333 11 111011111111 1122234699998
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
... + . ......+.+.|+++|.++.
T Consensus 237 d~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 237 EMS-G----N----PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred ECC-C----C----HHHHHHHHHHhccCCEEEE
Confidence 532 1 1 1223444578899998863
No 466
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=63.72 E-value=20 Score=32.84 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHc----CC-CeEEEEeCh-HHH-HHHHHHHHhCCCCCCcEEEEEcccccccC-------
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA----GA-KHVYAVEAS-EMA-EYARKLIAGNPSLGERITVIKGKVEEVEL------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~----g~-~~V~gvD~s-~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------- 127 (414)
.++..|+++|.--|.-+++.|.. |. .+|.++|++ .-. ..|++ ..+|.++.++..+...
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHHH
Confidence 46788999999988777766643 52 379999998 433 33332 2469999999877531
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. +.--+.++.-..|.. +. .-.-++...++|.-|-.++.....
T Consensus 140 ~~~y~kIfvilDsdHs~--~h-vLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 140 KNEYPKIFVILDSDHSM--EH-VLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred hcCCCcEEEEecCCchH--HH-HHHHHHHhhhHhhcCceEEEeccc
Confidence 1 122233332222221 12 233456677888888887765444
No 467
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=63.71 E-value=19 Score=35.15 Aligned_cols=94 Identities=30% Similarity=0.391 Sum_probs=51.5
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc----cccccCCCcee
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK----VEEVELPEKAD 132 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d----~~~~~~~~~fD 132 (414)
...++.+||..|+|. |..+..+|+. |. +|+++..+ +..+.+++. + ...-+.....+ +........+|
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g-~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----G-ADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----C-CCEEecCcccCHHHHHHHHhCCCCCC
Confidence 445678999998764 6666666665 65 69998776 455555332 1 11111111111 11111224589
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+++... + . ...+..+.+.|+++|.++.
T Consensus 230 ~vld~~-g----~----~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 230 VVIDAT-G----N----PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred EEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 998631 1 1 1233455678899998763
No 468
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=63.50 E-value=8.5 Score=34.98 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=29.2
Q ss_pred eeEEEEcCCccccCC----------------hhhHHHHHHHHHhccCCCeEEEcccceeEEe
Q 015038 131 ADILISEPMGTLLVN----------------ERMLETYVIARDRFLVPMGKMFPSVGRIHMA 176 (414)
Q Consensus 131 fDvIis~~~~~~l~~----------------e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 176 (414)
+|+|+.+|+...... ...+..++.++.|+|||||.+++........
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~ 62 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIA 62 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhh
Confidence 578888877443333 1225677889999999999998776654443
No 469
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=63.42 E-value=23 Score=35.92 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=27.7
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE 96 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~ 96 (414)
+.+...++.+||-|.+|. ..++.++..++++|+|||+|+
T Consensus 29 ~aL~i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp 67 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNP 67 (380)
T ss_pred HHhCCCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCH
Confidence 445567888999997654 333444555778999999995
No 470
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=63.11 E-value=26 Score=33.84 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=55.7
Q ss_pred CEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH-------hCCCCC--------CcEEEEEccccccc
Q 015038 65 RVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIA-------GNPSLG--------ERITVIKGKVEEVE 126 (414)
Q Consensus 65 ~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~-------~n~~l~--------~~i~vi~~d~~~~~ 126 (414)
++|.=||+|. | .++..++.+|. +|+++|.+ +.++.+++.+. ..+.+. .++. ...+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHHh-
Confidence 4688899986 3 55666677776 69999998 45555444322 111010 0122 12222221
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
...|+|+... ..+......++..+...++|+.+++-...+
T Consensus 82 --~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 82 --RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred --CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 4679998632 223333556677778888888766533333
No 471
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=63.08 E-value=84 Score=30.37 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=41.6
Q ss_pred CCCEEEEECCCccHHHHHHH----HcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAA----QAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a----~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~fDv 133 (414)
.+++||-.|+ +|.++..++ +.|. +|+++..+. ............+ ...+++++.+|+.+... -..+|+
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDG-AKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccC-CCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 4678998884 555554444 4466 587776552 2222222222111 23468999999987531 135898
Q ss_pred EEEcC
Q 015038 134 LISEP 138 (414)
Q Consensus 134 Iis~~ 138 (414)
||...
T Consensus 81 vih~A 85 (325)
T PLN02989 81 VFHTA 85 (325)
T ss_pred EEEeC
Confidence 88643
No 472
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.07 E-value=46 Score=32.95 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=54.6
Q ss_pred CEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHH-------hCCC----CCCcEEEEEcccccccCCCc
Q 015038 65 RVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE-MAEYARKLIA-------GNPS----LGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 65 ~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~-------~n~~----l~~~i~vi~~d~~~~~~~~~ 130 (414)
++|--||+|+ | .++..++.+|. .|+..|.++ .++.++..+. +.+. ...++++.. ++++ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH--HhcC
Confidence 5788999996 3 55666777787 599999984 4444443322 1110 012233321 2221 1146
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
.|+|+-..+ .+...-..++..+.+.++|+.++
T Consensus 84 aDlViEavp----E~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 84 ADFIQESAP----EREALKLELHERISRAAKPDAII 115 (321)
T ss_pred CCEEEECCc----CCHHHHHHHHHHHHHhCCCCeEE
Confidence 899986432 22233456778888999998743
No 473
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=63.04 E-value=35 Score=33.50 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=53.8
Q ss_pred CEEEEECCCc--cHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccc---------ccccCCCceeE
Q 015038 65 RVVVDVGAGS--GILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV---------EEVELPEKADI 133 (414)
Q Consensus 65 ~~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~---------~~~~~~~~fDv 133 (414)
.+|+-+|||. |.++..++++| ..|+.+-.++.++..++ ++ +.+....- .+......+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~----~G-----L~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKK----KG-----LRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHh----CC-----eEEecCCCccccccccccChhhcCCCCE
Confidence 3688999997 57788899998 55777666655433333 22 22222211 00111247999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+...=. -..+..+..+.+.++++..+++
T Consensus 71 viv~vKa------~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 71 VIVTVKA------YQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred EEEEecc------ccHHHHHHHhhhcCCCCcEEEE
Confidence 9963211 1257778888899999987654
No 474
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=62.97 E-value=13 Score=35.02 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG 107 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~ 107 (414)
..|.+.++..+..+++|+-||+|..++.+.+. ..+|+.-|+++ .+...+..++.
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHhc
Confidence 44555554336789999999999999988764 45799999995 44555545443
No 475
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=62.93 E-value=70 Score=31.67 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~ 137 (414)
.++.+||-.|+|. |.++..+|++ |+ +|++++.++ ....+.+. .+ . + ..+...+...+. ....+|+++-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~G-a-~-~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LG-A-D-DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cC-C-c-EEecCCChHHHHHhcCCCcEEEEC
Confidence 4678888888765 6666667776 66 588887763 33333222 22 1 1 111111111111 11358888842
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+ . ...+..+.+.|+++|.++..
T Consensus 252 -~g----~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 -VP----V----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred -CC----c----hHHHHHHHHHhccCCEEEEE
Confidence 11 1 12234445789999988643
No 476
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=62.87 E-value=26 Score=34.05 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=49.6
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc------cccccCCCce
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK------VEEVELPEKA 131 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d------~~~~~~~~~f 131 (414)
..++.+||-.|+|. |.++..+++. |..+|++++.++ ..+.+++ .+ . + .++..+ +.+......+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LG-A-D--HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hC-C-c--EEEcCCccHHHHHHHHhCCCCC
Confidence 34678899999664 4555555554 635699998774 4444432 22 1 1 122211 1111112469
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+|+... + . ...+....+.|+++|.++.
T Consensus 237 dvvld~~-g----~----~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 237 DAVIDFV-G----S----DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CEEEEcC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 9998521 1 1 1233445678899998863
No 477
>PRK08324 short chain dehydrogenase; Validated
Probab=62.74 E-value=73 Score=34.87 Aligned_cols=72 Identities=28% Similarity=0.327 Sum_probs=45.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.++++||-.|++.|+ ++..+++.|+ +|++++.++ .++.+.+.+.. . .++.++.+|+.+...
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~---~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGG---P-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhc---c-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999975542 3344455577 699999984 44433333322 1 368888888876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+.+|+||.+.
T Consensus 495 ~~g~iDvvI~~A 506 (681)
T PRK08324 495 AFGGVDIVVSNA 506 (681)
T ss_pred HcCCCCEEEECC
Confidence 13689999754
No 478
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=62.35 E-value=42 Score=31.08 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.+......++.. ..++.++.+|+.+...
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAA---GGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 568899999976643 3344555687 69999987 4444444444432 2468888888876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|.+|.+.
T Consensus 85 ~~~~id~vi~~a 96 (256)
T PRK06124 85 EHGRLDILVNNV 96 (256)
T ss_pred hcCCCCEEEECC
Confidence 14678988753
No 479
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=62.21 E-value=62 Score=31.68 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeChH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEASE 96 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s~ 96 (414)
.++++|+-+|+|. |.+....+. .|+.+|+.++.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5788999999986 654433333 4777899999984
No 480
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=62.06 E-value=17 Score=35.12 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=52.4
Q ss_pred cCCCCCCEEEEECC--CccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc------cCC
Q 015038 59 RADFIGRVVVDVGA--GSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV------ELP 128 (414)
Q Consensus 59 ~~~~~~~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------~~~ 128 (414)
....++.+||-.|+ |.|.++..+|++ |+ +|++++.+ +..+.+++ .+ .. .++...-.++ ..+
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~G-a~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LG-FD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cC-CC---EEEeCCCccHHHHHHHHCC
Confidence 34457889998884 346677777776 66 69999877 45555544 22 21 2222211111 012
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.+|+|+-. .+ . ..+....+.|+++|.++.
T Consensus 210 ~gvd~vld~-~g----~-----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 210 DGIDCYFDN-VG----G-----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CCcEEEEEC-CC----H-----HHHHHHHHhhccCCEEEE
Confidence 468998842 21 1 123455678999999864
No 481
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=61.50 E-value=44 Score=31.21 Aligned_cols=70 Identities=30% Similarity=0.399 Sum_probs=44.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+. +..++.++.+|+.+...
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQR------FGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH------hCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 467899999987653 3444556677 59999987 344333222 23457888888876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 14689998764
No 482
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.45 E-value=41 Score=31.30 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..+.+.+.+... ..++.++.+|+.+...
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKE---GRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999998763 3444566687 588887764333344444332 2468889999876431
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-+.+|++|.+.
T Consensus 89 ~g~id~li~~a 99 (258)
T PRK06935 89 FGKIDILVNNA 99 (258)
T ss_pred cCCCCEEEECC
Confidence 13689999754
No 483
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=61.43 E-value=61 Score=31.04 Aligned_cols=91 Identities=22% Similarity=0.191 Sum_probs=49.5
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC---CCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL---GERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l---~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
+|+-+|+|. | .++..+++.|. .|+.++.+ +.++..++ ++ + .........-..+....+.+|+|+....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNE----NG-LRLEDGEITVPVLAADDPAELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHH----cC-CcccCCceeecccCCCChhHcCCCCEEEEecc
Confidence 588899987 3 45666677776 69999986 44433322 22 2 1111100000111111157899986433
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.. .++.++..+...+.++..++.
T Consensus 76 ~~------~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 AY------QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cc------cHHHHHHHHhhhcCCCCEEEE
Confidence 22 256677777778887766654
No 484
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.95 E-value=27 Score=34.04 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc-------cccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK-------VEEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d-------~~~~~~~~ 129 (414)
...++..||-.|||. |.....+|++ |++.+++++.++ ..+.+++ .+ . -.++... +.......
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g-a---~~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FG-A---TDIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cC-C---ceEecCCcccHHHHHHHhcCCC
Confidence 344667777788764 5666666665 776799998875 3333332 22 1 1222221 11111224
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++.. .+ . ...+....+.|+++|.++.
T Consensus 237 ~~d~il~~-~g----~----~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 237 GADAVLEC-VG----T----QESMEQAIAIARPGGRVGY 266 (345)
T ss_pred CCCEEEEC-CC----C----HHHHHHHHHhhccCCEEEE
Confidence 58998852 11 1 2234555688899998864
No 485
>PRK07062 short chain dehydrogenase; Provisional
Probab=60.94 E-value=45 Score=31.10 Aligned_cols=75 Identities=25% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+.... ...++.++..|+.+...
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKF-PGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999987763 3455556687 59999987 34444333333221 12367788888876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 84 ~~g~id~li~~A 95 (265)
T PRK07062 84 RFGGVDMLVNNA 95 (265)
T ss_pred hcCCCCEEEECC
Confidence 14689988764
No 486
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=60.76 E-value=44 Score=33.21 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 61 DFIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
..++++|.-||.|+ | ..+..+...|. +|++.+.. ...+.+ ...+ +++ .++.++ -...|+|+..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A----~~~G-----~~v--~sl~Ea--ak~ADVV~ll 78 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVA----KADG-----FEV--MSVSEA--VRTAQVVQML 78 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHH----HHcC-----CEE--CCHHHH--HhcCCEEEEe
Confidence 35789999999986 5 34555555677 58777643 222222 2222 222 233332 2468999975
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+ ++....-+...+...|+||..++++.+
T Consensus 79 LP-----d~~t~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 79 LP-----DEQQAHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred CC-----ChHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 44 223222223567888999999887764
No 487
>PRK07677 short chain dehydrogenase; Provisional
Probab=60.72 E-value=43 Score=31.07 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=45.7
Q ss_pred CCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------C
Q 015038 64 GRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-----------P 128 (414)
Q Consensus 64 ~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----------~ 128 (414)
++++|-.|++.|+ ++..+++.|+ +|++++.++ .++.+.+.+... ..++.++.+|+.+... -
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQF---PGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4678988987763 3444556677 699999873 444444444332 2468889998866421 1
Q ss_pred CceeEEEEcC
Q 015038 129 EKADILISEP 138 (414)
Q Consensus 129 ~~fDvIis~~ 138 (414)
++.|++|.+.
T Consensus 77 ~~id~lI~~a 86 (252)
T PRK07677 77 GRIDALINNA 86 (252)
T ss_pred CCccEEEECC
Confidence 3689999764
No 488
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.48 E-value=45 Score=30.77 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=48.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++..+..|+.+.+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999985 5666677787 59999887 45544444444322 346667677655320
Q ss_pred C-C-ceeEEEEcC
Q 015038 128 P-E-KADILISEP 138 (414)
Q Consensus 128 ~-~-~fDvIis~~ 138 (414)
. + ++|++|.+.
T Consensus 79 ~~g~~iD~li~na 91 (227)
T PRK08862 79 QFNRAPDVLVNNW 91 (227)
T ss_pred HhCCCCCEEEECC
Confidence 1 3 789999875
No 489
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.26 E-value=45 Score=32.40 Aligned_cols=75 Identities=29% Similarity=0.373 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
..+++||-=||-+|+ ++..++++|++ ++-+-.. +-++...+..++.+... ++.++.+|+.+.+.
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 368899999999984 57778888885 4444444 44444433333332122 69999999987631
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+..|+.|.|.
T Consensus 88 ~fg~vDvLVNNA 99 (282)
T KOG1205|consen 88 HFGRVDVLVNNA 99 (282)
T ss_pred hcCCCCEEEecC
Confidence 16799999874
No 490
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=60.25 E-value=25 Score=34.94 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=31.4
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
....++.+||-.|+|. |.++..+|++ |+++|++++.+ +..+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3456788999998764 5666666665 77679999988 45555543
No 491
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=60.13 E-value=28 Score=34.15 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc-------ccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE-------VELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~-------~~~~~ 129 (414)
...++.+||-.|+|. |..+..+|++ |+..+++++.++ ....+.+ .+ . + .++..+-.+ .....
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g-~-~--~v~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FG-A-D--VVLNPPEVDVVEKIKELTGGY 242 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cC-C-c--EEecCCCcCHHHHHHHHhCCC
Confidence 345677777777654 5555556655 777788999874 3333332 22 2 1 122221111 11123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++.. .+ .. ..+....+.|+++|.++-
T Consensus 243 ~vdvvld~-~g----~~----~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 243 GCDIYIEA-TG----HP----SAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred CCCEEEEC-CC----Ch----HHHHHHHHHhhcCCEEEE
Confidence 58999852 11 11 123445678899998754
No 492
>PRK07102 short chain dehydrogenase; Provisional
Probab=60.12 E-value=46 Score=30.62 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred CEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------CCcee
Q 015038 65 RVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------PEKAD 132 (414)
Q Consensus 65 ~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------~~~fD 132 (414)
++||-.|+..|+ ++..+++.|. +|++++.++ -.+...+.+... ...++.++.+|+.+... ..++|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 478888865432 2344445576 699999873 333322323222 23478999999877531 13579
Q ss_pred EEEEcC
Q 015038 133 ILISEP 138 (414)
Q Consensus 133 vIis~~ 138 (414)
+++.+.
T Consensus 79 ~vv~~a 84 (243)
T PRK07102 79 IVLIAV 84 (243)
T ss_pred EEEECC
Confidence 998753
No 493
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=59.71 E-value=1.2e+02 Score=29.53 Aligned_cols=73 Identities=21% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--------------------HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--------------------MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--------------------~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
...+||-+|||. | -.+..++.+|.++++.+|.+. -++.+.+++++.+ ..-+|+....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 457899999985 4 356667778999999998641 1233444444433 2345666665
Q ss_pred ccccccCCCceeEEEEc
Q 015038 121 KVEEVELPEKADILISE 137 (414)
Q Consensus 121 d~~~~~~~~~fDvIis~ 137 (414)
.... ..-.+||+||+.
T Consensus 97 ~~~~-~~l~~fdvVV~~ 112 (286)
T cd01491 97 PLTT-DELLKFQVVVLT 112 (286)
T ss_pred cCCH-HHHhcCCEEEEe
Confidence 5322 112589999874
No 494
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=59.54 E-value=68 Score=28.49 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=47.3
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
....+++|.-+|+|. |.-....++ .|. +|++.|.+..... .....+ + ...++.++ -...|+|+..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~---~~~~~~-----~--~~~~l~el--l~~aDiv~~~ 98 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE---GADEFG-----V--EYVSLDEL--LAQADIVSLH 98 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH---HHHHTT-----E--EESSHHHH--HHH-SEEEE-
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh---hccccc-----c--eeeehhhh--cchhhhhhhh
Confidence 345789999999986 544333333 366 7999999842211 111111 2 22244433 1468999986
Q ss_pred CCc----cccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMG----TLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~----~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+. .++.+. +....+|+|.+++
T Consensus 99 ~plt~~T~~li~~--------~~l~~mk~ga~lv 124 (178)
T PF02826_consen 99 LPLTPETRGLINA--------EFLAKMKPGAVLV 124 (178)
T ss_dssp SSSSTTTTTSBSH--------HHHHTSTTTEEEE
T ss_pred hccccccceeeee--------eeeeccccceEEE
Confidence 653 234442 2236789888665
No 495
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=59.51 E-value=28 Score=34.66 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=31.6
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
....++.+||-.|+|. |.++..+|++ |+.+|++++.+ +..+.+++
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3445788999999865 6666666665 77679999998 45555543
No 496
>PRK07791 short chain dehydrogenase; Provisional
Probab=59.36 E-value=63 Score=30.86 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=45.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh----------HHHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS----------EMAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s----------~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+... ..++.++..|+.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~~~~~v 79 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAA---GGEAVANGDDIADWDGA 79 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhc---CCceEEEeCCCCCHHHH
Confidence 467899999988874 3445666787 58777653 2222222223322 245778888887642
Q ss_pred ---------CCCceeEEEEcC
Q 015038 127 ---------LPEKADILISEP 138 (414)
Q Consensus 127 ---------~~~~fDvIis~~ 138 (414)
.-+++|++|.+.
T Consensus 80 ~~~~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 80 ANLVDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 115789999764
No 497
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=59.30 E-value=38 Score=32.80 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=53.3
Q ss_pred CEEEEECCCc--cHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 65 RVVVDVGAGS--GILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 65 ~~VLDiGcGt--G~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.+|+-+|.|- |.++..+.+.|.. .+++.|.+. .++.+... + ..+. .. .+. ........|+||...+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g-v~d~--~~-~~~-~~~~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G-VIDE--LT-VAG-LAEAAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C-cccc--cc-cch-hhhhcccCCEEEEeccH
Confidence 5788899885 5667777777764 478888874 44433321 1 1111 10 111 01122468998854332
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
.....+++++...|++|..+ .+.+++-.
T Consensus 75 ------~~~~~~l~~l~~~l~~g~iv-~Dv~S~K~ 102 (279)
T COG0287 75 ------EATEEVLKELAPHLKKGAIV-TDVGSVKS 102 (279)
T ss_pred ------HHHHHHHHHhcccCCCCCEE-EecccccH
Confidence 23567778887788887654 44444443
No 498
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=59.22 E-value=21 Score=34.95 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc----cccCCCceeEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE----EVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~----~~~~~~~fDvI 134 (414)
.++.+||-.|+|. |..+..++++ |.+.|++++.++ ..+.+++. + ...-+.....+.. ++...+.+|++
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----G-ATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C-CcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4677777777652 5555555554 665588887764 33443332 2 2110111111111 11122469999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+... + . ...+....+.|+++|.++.
T Consensus 235 ld~~-g----~----~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 235 LEMS-G----A----PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred EECC-C----C----HHHHHHHHHhhcCCCEEEE
Confidence 8521 1 1 1223455678899998764
No 499
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=59.14 E-value=87 Score=30.28 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCc-cH-HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGS-GI-LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGt-G~-ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
-+...+.......++++|+-+|||- |. .+..++..|+++|+.++.+ +-++...+.+... . ..+.+... .++.
T Consensus 113 G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~--~-~~~~~~~~--~~~~ 187 (284)
T PRK12549 113 GFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR--F-PAARATAG--SDLA 187 (284)
T ss_pred HHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh--C-CCeEEEec--cchH
Confidence 3445555443345678999999986 33 3344455688899999998 4443333333221 1 11333221 1111
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
....+|+||...
T Consensus 188 ~~~~~aDiVInaT 200 (284)
T PRK12549 188 AALAAADGLVHAT 200 (284)
T ss_pred hhhCCCCEEEECC
Confidence 124689999653
No 500
>PRK09242 tropinone reductase; Provisional
Probab=59.13 E-value=53 Score=30.46 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.....+.... ...++.++.+|+.+...
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEF-PEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999987653 3444556677 59999887 44444444433321 13468888999876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|+++.+.
T Consensus 85 ~~g~id~li~~a 96 (257)
T PRK09242 85 HWDGLHILVNNA 96 (257)
T ss_pred HcCCCCEEEECC
Confidence 14689988754
Done!