BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015039
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 322 PILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTD 381
P+L ESD ++ + +++++ RR +R ++++EV L+ + + G G+W D
Sbjct: 506 PVLALESDALALVPVNE----KPKRTELSQRR-TRRPFSVTEVEALVSAVEEVGTGRWRD 560
Query: 382 IKRLLFSSSSHRTPIDLR 399
+K F ++SHRT +DL+
Sbjct: 561 VKLRSFENASHRTYVDLK 578
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 343 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
RK K +R+ +R ++++EV L+ + + G G+W D+K F ++ HRT +DL+
Sbjct: 515 RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLK 571
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
+R+ +R +T+SEV L+ + + G G+W D+K F+ +HRT +DL+
Sbjct: 311 QRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLK 358
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
+R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+
Sbjct: 505 QRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLK 552
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 37/59 (62%)
Query: 341 RVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
+ ++ + ++ +R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+
Sbjct: 438 KFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLK 496
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
+R+ +R +T++EV L++ + G G+W D+K F + HRT +DL+
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLK 577
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399
++++EV L+ + + G G+W D+K F + HRT +DL+
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLK 511
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 38.5 bits (88), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407
WT E L+D I QFG G W D+ + +S RTP ++ ++ +Y+
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPTEVMEHYVTMYI 115
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407
WT E L+D I QFG G W D+ + +S RTP ++ ++ +Y+
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHYVSMYI 115
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407
WT E L+D I QFG G W D+ + +S RTP ++ ++ +Y+
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHYVSMYI 115
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407
WT E L+D I Q+G G W D+ + +S RTP ++ ++ +Y+
Sbjct: 70 WTSREEQSLLDAIEQYGFGNWEDMAAHVGAS---RTPQEVMDHYVSMYI 115
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSS 391
WT E ++L+D I Q+G G W DI + + + S+
Sbjct: 74 WTAREEIRLLDAIEQYGFGNWEDISKHIETKSA 106
>sp|A6MW07|RR3_RHDSA 30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina
GN=rps3 PE=3 SV=1
Length = 218
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 167 VAVGMSDSSITALESECKNDSLEKMVNCELHGTF----KSKCEYQAPDMEKCPSSHDMDR 222
V V +S + I+ +E K+D +E ++ G S + D+ K + ++ R
Sbjct: 43 VKVNLSSAGISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIINKNNQIR 102
Query: 223 FD-----ELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLM 277
+ +D+D N++ I + +KR+ R+ T++ I+
Sbjct: 103 INVTELKNVDADANLIAEFIAQQLEKRIA----------FRRATRQAIQ----------- 141
Query: 278 RGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDS 337
R Q + +K +G G+++A W+R GR+ P+ +D D + ++
Sbjct: 142 RAQRANVQGIK------VQVSGRLNGAEIARSEWVREGRV----PLQTLRADIDYATKEA 191
Query: 338 D 338
D
Sbjct: 192 D 192
>sp|B3CMH5|RUVB_WOLPP Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
pipientis subsp. Culex pipiens (strain wPip) GN=ruvB
PE=3 SV=1
Length = 329
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNLNIRPEQLDD-FV-GQKDLIQNLKVFINAAQTRAEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDIEFTE 135
+DF LDI E
Sbjct: 126 MEDFCLDILVGE 137
>sp|C0R4X2|RUVB_WOLWR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia sp.
subsp. Drosophila simulans (strain wRi) GN=ruvB PE=3
SV=1
Length = 324
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNINIRPEQLDD-FV-GQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDIEFTE----KVAKFDCGP 144
+DF LDI E + + D P
Sbjct: 126 MEDFCLDILVGEGPSTRTLRIDLPP 150
>sp|P61539|RUVB_WOLPM Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
pipientis wMel GN=ruvB PE=3 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNINIRPEQLDD-FV-GQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDIEFTE----KVAKFDCGP 144
+DF LDI E + + D P
Sbjct: 126 MEDFCLDILVGEGPSTRTLRIDLPP 150
>sp|Q5GT33|RUVB_WOLTR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=ruvB PE=3 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ F KD + + K ++D VL G LGK++
Sbjct: 12 EDVRNLNIRPEQLDDFF--GQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L G+ L L+ D+ +D+ H N L T
Sbjct: 70 IISKELRVSFRATSGPL--LNKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDIEFTE----KVAKFDCGP 144
+DF LD+ E + + D P
Sbjct: 126 MEDFCLDLLVGEGPSTRTLRIDLPP 150
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 339 DDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL 386
D + R+R + D + + WT E +L D ++ G+GKW+D+ +L+
Sbjct: 687 DVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLM 734
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,805,360
Number of Sequences: 539616
Number of extensions: 6615984
Number of successful extensions: 20312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 20212
Number of HSP's gapped (non-prelim): 131
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)