Query 015039
Match_columns 414
No_of_seqs 115 out of 246
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 98.9 8.4E-10 1.8E-14 79.8 3.0 48 356-406 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.6 3.7E-08 7.9E-13 67.2 3.6 47 357-407 2-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.5 1.4E-07 3E-12 63.7 3.5 45 358-406 1-45 (45)
4 PF13921 Myb_DNA-bind_6: Myb-l 98.1 2.7E-06 5.8E-11 63.2 2.8 43 359-406 1-43 (60)
5 PLN03212 Transcription repress 97.9 2E-05 4.3E-10 76.5 5.7 51 355-408 24-74 (249)
6 PLN03091 hypothetical protein; 97.7 5E-05 1.1E-09 78.8 4.9 51 355-408 13-63 (459)
7 TIGR01557 myb_SHAQKYF myb-like 97.5 8.9E-05 1.9E-09 57.3 3.7 45 354-400 1-48 (57)
8 PLN03212 Transcription repress 97.4 0.00012 2.6E-09 71.2 3.0 50 355-409 77-126 (249)
9 PLN03091 hypothetical protein; 97.1 0.00042 9.1E-09 72.1 3.7 48 356-408 67-114 (459)
10 KOG0457 Histone acetyltransfer 96.5 0.0017 3.7E-08 67.4 3.1 45 358-406 74-118 (438)
11 PF13837 Myb_DNA-bind_4: Myb/S 96.4 0.0011 2.3E-08 52.0 0.8 54 356-409 1-67 (90)
12 KOG0048 Transcription factor, 96.3 0.0036 7.9E-08 58.9 3.7 49 356-407 9-57 (238)
13 PF13873 Myb_DNA-bind_5: Myb/S 95.9 0.0092 2E-07 46.5 3.5 54 357-410 3-73 (78)
14 KOG0048 Transcription factor, 94.4 0.033 7.1E-07 52.6 3.1 50 355-409 61-110 (238)
15 PF13325 MCRS_N: N-terminal re 93.6 0.036 7.8E-07 52.7 1.8 55 356-410 73-130 (199)
16 KOG0049 Transcription factor, 92.7 0.067 1.4E-06 58.9 2.3 44 352-399 408-451 (939)
17 KOG0051 RNA polymerase I termi 92.5 0.094 2E-06 56.9 3.1 49 355-409 383-431 (607)
18 PF09111 SLIDE: SLIDE; InterP 92.4 0.064 1.4E-06 47.0 1.4 54 355-408 48-112 (118)
19 KOG0049 Transcription factor, 92.1 0.11 2.4E-06 57.2 3.1 52 353-408 357-408 (939)
20 COG5114 Histone acetyltransfer 91.4 0.13 2.8E-06 52.9 2.5 45 358-406 65-109 (432)
21 KOG4282 Transcription factor G 88.4 0.4 8.6E-06 47.1 3.2 54 356-409 54-116 (345)
22 PLN03142 Probable chromatin-re 86.4 0.58 1.2E-05 53.6 3.4 54 355-408 925-986 (1033)
23 PF08074 CHDCT2: CHDCT2 (NUC03 77.2 1.3 2.7E-05 41.9 1.4 31 355-385 2-32 (173)
24 COG5259 RSC8 RSC chromatin rem 75.9 2.2 4.8E-05 45.8 3.0 29 357-386 280-308 (531)
25 KOG0384 Chromodomain-helicase 74.0 1.8 3.9E-05 50.8 1.9 36 355-390 1132-1167(1373)
26 PF04504 DUF573: Protein of un 71.7 4.1 8.8E-05 34.5 3.0 54 355-408 3-64 (98)
27 KOG2656 DNA methyltransferase 70.3 1.7 3.6E-05 45.8 0.5 89 306-409 90-188 (445)
28 KOG1279 Chromatin remodeling f 67.6 4.9 0.00011 43.2 3.3 32 354-386 251-282 (506)
29 PF12776 Myb_DNA-bind_3: Myb/S 61.8 5.7 0.00012 31.5 2.0 53 358-410 1-66 (96)
30 KOG4468 Polycomb-group transcr 60.1 11 0.00023 42.1 4.1 49 356-405 88-136 (782)
31 KOG0050 mRNA splicing protein 58.8 5.5 0.00012 43.5 1.8 42 357-402 8-49 (617)
32 COG5147 REB1 Myb superfamily p 57.3 3 6.4E-05 44.9 -0.5 48 356-409 291-338 (512)
33 PF08914 Myb_DNA-bind_2: Rap1 39.5 32 0.00069 27.5 2.9 49 356-407 2-58 (65)
34 KOG0051 RNA polymerase I termi 36.6 34 0.00073 38.0 3.5 50 354-408 434-509 (607)
35 COG5118 BDP1 Transcription ini 35.5 40 0.00086 36.1 3.6 50 352-406 361-410 (507)
36 COG5147 REB1 Myb superfamily p 30.3 41 0.00088 36.6 2.8 43 356-402 20-62 (512)
37 PF00984 UDPG_MGDP_dh: UDP-glu 27.3 17 0.00037 30.6 -0.5 45 114-165 19-63 (96)
38 KOG4329 DNA-binding protein [G 22.4 68 0.0015 34.3 2.6 32 353-385 274-305 (445)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.90 E-value=8.4e-10 Score=79.76 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
+.+||.+|.+.|+++|++||.++|..|...+. ..||..+++.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 35899999999999999999999999999887 3799999999999974
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.61 E-value=3.7e-08 Score=67.22 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
..||.+|.+.|+.+|.+||.++|..|...+. .||+.+++++|+++++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 5799999999999999999889999988764 7999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.47 E-value=1.4e-07 Score=63.71 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 358 ~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
.||.+|.+.|+.++.+||.++|..|.+... .||..+++++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999899999998753 499999999999874
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.06 E-value=2.7e-06 Score=63.21 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 359 WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
||.+|.+.|+.+|.+||. +|+.|...+ . +||+-++++||++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l-~---~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL-G---NRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS-T---TS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH-C---cCCHHHHHHHHHHHC
Confidence 999999999999999995 999998774 3 799999999999943
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.87 E-value=2e-05 Score=76.52 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|+..|++||.++|..|.+..- ..||+-+.+++|.|.++-
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhch
Confidence 345799999999999999999999999976532 379999999999998753
No 6
>PLN03091 hypothetical protein; Provisional
Probab=97.65 E-value=5e-05 Score=78.80 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|++.|++||.++|..|.+..- ..||+-+.+++|.|.+.-
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRP 63 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCC
Confidence 345799999999999999999999999986532 379999999999987653
No 7
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.53 E-value=8.9e-05 Score=57.32 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCch---HhhHhhhCCCCCCCCCCccch
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHRTPIDLRV 400 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGvG~W---t~Il~~~F~~f~~RT~VDLKD 400 (414)
|++..||.||-..+++||+.||.|+| +.|+..+-.. ..|..+++-
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~--~lT~~qV~S 48 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVD--GLTRDQVAS 48 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCC--CCCHHHHHH
Confidence 56778999999999999999999999 9998776431 227666653
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.36 E-value=0.00012 Score=71.23 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
++.+||.||.+.|++.+++||- +|+.|.+.+ ..||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 3468999999999999999995 999998744 3799999999999887764
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.07 E-value=0.00042 Score=72.14 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
+.+||.||.+.|++-+++||. +|+.|...+ ..||..++|.+|+.++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 458999999999999999997 999999643 379999999999998765
No 10
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.52 E-value=0.0017 Score=67.41 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 358 ~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
-||.+|+-.|++|+..||.|||..|.+..= .||.-+-|+.|.+..
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHF 118 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHH
Confidence 599999999999999999999999998764 578889998887764
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.43 E-value=0.0011 Score=52.02 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--chHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~k------yGv-----G--~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
|..||.+|+..|++-+.. |+. + -|..|.......=-.||+.++++||.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 457999999999998887 221 1 49999765321102799999999999997653
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.30 E-value=0.0036 Score=58.94 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+-+||.||.+.|++=|++||.|+|..|-+..-. .|++=...=+|-|-++
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccC
Confidence 468999999999999999999999999887643 7999999999988765
No 13
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.88 E-value=0.0092 Score=46.49 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHhh-----CC-----------CchHhhHhhhCCC-CCCCCCCccchhhhhhhhhcc
Q 015039 357 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSS-SSHRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 357 r~WT~eEveaLv~GV~ky-----Gv-----------G~Wt~Il~~~F~~-f~~RT~VDLKDKWRNL~K~~~ 410 (414)
.+||.+|.+.|++-|.+| |. -.|..|...+-.. ...||..+||.+|.||.....
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999988 42 2499998765322 138999999999999987643
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.41 E-value=0.033 Score=52.60 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
++..||.||++.|++.-++||- +|+.|.+... .||--++|--|..-+|..
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~LP----GRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRLP----GRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhCC----CcCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999 8999997764 699999999996665543
No 15
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=93.64 E-value=0.036 Score=52.70 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHhh--CCCchHhhHhhhCCCCC-CCCCCccchhhhhhhhhcc
Q 015039 356 QRMWTLSEVMKLIDGISQF--GVGKWTDIKRLLFSSSS-HRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~ky--GvG~Wt~Il~~~F~~f~-~RT~VDLKDKWRNL~K~~~ 410 (414)
+-.||.+|.+.|....... ...++.+|+..+...|. .||+-.|.+.||.|.++.-
T Consensus 73 kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L 130 (199)
T PF13325_consen 73 KALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL 130 (199)
T ss_pred cCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence 3489999999999987766 56789999998765553 6999999999999887754
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.67 E-value=0.067 Score=58.92 Aligned_cols=44 Identities=32% Similarity=0.603 Sum_probs=34.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccc
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLR 399 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLK 399 (414)
++-+.-+||..|.+.|+..|.+||+|+|.+|.-.. -+||+-++-
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~ 451 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLR 451 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHH
Confidence 44555689999999999999999999999997543 256774443
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=92.49 E-value=0.094 Score=56.86 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
.+-+||.+|.+.|..=|.++|. .|+.|-+.. .|.+.+-+|+||+.++.+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCG 431 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccc
Confidence 4458999999999999999998 999998664 689999999999998876
No 18
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.38 E-value=0.064 Score=46.98 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CchHhhHhhh-------CCC-CCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~-------F~~-f~~RT~VDLKDKWRNL~K~ 408 (414)
..+.||.+|...|+--|.+||. |.|..|++.. |+- |..||+.+|..+=..|+++
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999 9999998741 221 2589999999998888765
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.08 E-value=0.11 Score=57.25 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=44.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 353 RK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
-=++.+||.+|...|+.+|.+||.--|.+|+..+. +|+-.++.|+|-|.+..
T Consensus 357 sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 357 SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP----NRSDSQCRERYTNVLNR 408 (939)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC----CccHHHHHHHHHHHHHH
Confidence 33457899999999999999999999999997764 68999999999876543
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=91.39 E-value=0.13 Score=52.92 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 358 ~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
-|+..|+-.|++|....|.|||..|.+..- .|+.-++|+.|-.+.
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y 109 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMY 109 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHH
Confidence 699999999999999999999999987653 589999999886654
No 21
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=88.45 E-value=0.4 Score=47.10 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHH----hhCCCc-----hHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGIS----QFGVGK-----WTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~----kyGvG~-----Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
...|+.+|+.+|++.-. .|..|+ |..|-+..-..=..||+.+.|.||.||.|+.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999998765 345566 9999774322114799999999999998764
No 22
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=86.42 E-value=0.58 Score=53.60 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhh-------CC-CCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FS-SSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~-------F~-~f~~RT~VDLKDKWRNL~K~ 408 (414)
+.+.||.+|...|+-.+.+||.|+|..|+... |+ -|..||+.+|+.+=..|++.
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999997641 22 13689999999998888764
No 23
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.19 E-value=1.3 Score=41.95 Aligned_cols=31 Identities=29% Similarity=0.650 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRL 385 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~ 385 (414)
.+.-|-..-.=.|+.||..||.|+|.+|.++
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd 32 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQND 32 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcC
Confidence 4456777778889999999999999999987
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=75.92 E-value=2.2 Score=45.80 Aligned_cols=29 Identities=28% Similarity=0.815 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 386 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~ 386 (414)
+.||.+|.-.|.+||++||- .|.+|.++.
T Consensus 280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~HV 308 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGD-DWDKVARHV 308 (531)
T ss_pred ccccHHHHHHHHHHHHHhhh-hHHHHHHHh
Confidence 47999999999999999998 999998653
No 25
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=74.05 E-value=1.8 Score=50.84 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCC
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS 390 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f 390 (414)
.---|..++...|.-||-+||.|+|..|+.+..-.|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l 1167 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGL 1167 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccc
Confidence 445799999999999999999999999998754433
No 26
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=71.71 E-value=4.1 Score=34.50 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCc---hHhhHhhhCCCC-CCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQF----GVGK---WTDIKRLLFSSS-SHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~ky----GvG~---Wt~Il~~~F~~f-~~RT~VDLKDKWRNL~K~ 408 (414)
-+|.||.+++-.|++|+-.| |... |..+....-..+ .+=|..+|.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999888 7653 444433211111 123668899999988664
No 27
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=70.28 E-value=1.7 Score=45.83 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=60.3
Q ss_pred cccccccccCCCCCCCCcccccCCCCCCCCC-CCc-cccccCCcccccccCCCCCCCHHHHHHHHHHHHhhCCCchHhhH
Q 015039 306 VASESWLRGGRLKKRSPILGFESDDDIFSSD-SDD-DRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIK 383 (414)
Q Consensus 306 v~~~~r~Rrgr~~kn~S~~~~E~Dde~~~se-S~d-~~~p~~k~k~~~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il 383 (414)
.-.-+|+|.+-.-++.+.-+|...-++..=. .+- ..+. -..||.+|++.|-+-.++|-. +|--|.
T Consensus 90 ~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~------------dn~WskeETD~LF~lck~fDL-Rf~VIa 156 (445)
T KOG2656|consen 90 ATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLN------------DNSWSKEETDYLFDLCKRFDL-RFFVIA 156 (445)
T ss_pred ceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhc------------cccccHHHHHHHHHHHHhcCe-eEEEEe
Confidence 3344667777777777666666533321111 000 0110 157999999999999999999 999999
Q ss_pred hhh----CCCCCCCCCCccchhh----hhhhhhc
Q 015039 384 RLL----FSSSSHRTPIDLRVFF----IFLYLIE 409 (414)
Q Consensus 384 ~~~----F~~f~~RT~VDLKDKW----RNL~K~~ 409 (414)
+.| |. .+||==|||||| |+|.++.
T Consensus 157 DRyd~qq~~--~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 157 DRYDNQQYK--KSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred eccchhhcc--ccccHHHHHHHHHHHHHHHHHcc
Confidence 887 55 379999999999 5665543
No 28
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=67.56 E-value=4.9 Score=43.21 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhh
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL 386 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~ 386 (414)
.-...||..|+-.|.+||.+||- .|.+|-++.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hV 282 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHV 282 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhcc
Confidence 33457999999999999999998 999998654
No 29
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=61.85 E-value=5.7 Score=31.50 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhh-------CCC-----chHhhHhhhCCCC-CCCCCCccchhhhhhhhhcc
Q 015039 358 MWTLSEVMKLIDGISQF-------GVG-----KWTDIKRLLFSSS-SHRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 358 ~WT~eEveaLv~GV~ky-------GvG-----~Wt~Il~~~F~~f-~~RT~VDLKDKWRNL~K~~~ 410 (414)
+||.++.+.|++.+... +.| .|..|...+...+ ...|.-+||.||+.|.+...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~ 66 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR 66 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence 59999999999988644 223 3777776543221 35677889999999977543
No 30
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=60.14 E-value=11 Score=42.12 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFL 405 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL 405 (414)
++.||-.|++++-+|++.||. .+.+|.+.....-+.-|-|..|.|..+-
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr 136 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVR 136 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHH
Confidence 568999999999999999999 7777743322111234556666665443
No 31
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=58.81 E-value=5.5 Score=43.47 Aligned_cols=42 Identities=21% Similarity=0.429 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFF 402 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKW 402 (414)
--|+..|.+.|..+|.+||.-.|+.|...+--. |.-.-|-+|
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll~~k----t~rqC~~rw 49 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRK----TARQCKARW 49 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHHhhc----chhHHHHHH
Confidence 369999999999999999999999998776432 454555555
No 32
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=57.28 E-value=3 Score=44.92 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
+..||.+|+..|..=|.++|. .|+.|.... +|-+.|..|+||+-++..
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhcccc
Confidence 458999999999999999976 999998654 578888889999988764
No 33
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=39.51 E-value=32 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhh---C---CCc--hHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~ky---G---vG~--Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
|.++|.+|.++|++=|.++ | .|| |+.+-..+. ..+|---++|+|+.-++
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh
Confidence 4579999999999999655 3 243 777765553 37899999999954433
No 34
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=36.63 E-value=34 Score=37.96 Aligned_cols=50 Identities=24% Similarity=0.439 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh-------------------CCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 354 KNQRMWTLSEVMKLIDGIS-------QF-------------------GVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~-------ky-------------------GvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+++.+||.+|.+.|++-|+ .| ++ +|+.|-+. +..|+.+.=+=||--|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I-~Wt~vse~----~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDI-NWTLVSEM----LGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCc-chhhhhHh----hcCCCcchHHHHHHHHHh
Confidence 4556899999999999996 44 23 79998772 357888888888877765
Q ss_pred h
Q 015039 408 I 408 (414)
Q Consensus 408 ~ 408 (414)
.
T Consensus 509 ~ 509 (607)
T KOG0051|consen 509 S 509 (607)
T ss_pred h
Confidence 4
No 35
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=35.46 E-value=40 Score=36.12 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
+++..-+||.+|.+.+-+++..+|+ .+..|.+.|.. |..-++|-||.+=.
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~----R~RkqIKaKfi~Ee 410 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFPN----RERKQIKAKFIKEE 410 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCc----hhHHHHHHHHHHHh
Confidence 4555678999999999999999999 89999877654 55556777775543
No 36
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=30.34 E-value=41 Score=36.59 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFF 402 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKW 402 (414)
.-.|+..|.+.|...|++||.-+|++|...|-. ||+=|-+-+|
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~----~~~kq~~~rw 62 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS----STGKQSSNRW 62 (512)
T ss_pred CCCCCCcchhHHHHHHhhcccccHHHHHHHhcc----cccccccchh
Confidence 348999999999999999999999999877643 7888888888
No 37
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=27.26 E-value=17 Score=30.59 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=28.9
Q ss_pred ccccccccccccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCCCC
Q 015039 114 FHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGS 165 (414)
Q Consensus 114 ~~a~~~~s~~c~~~~ld~e~a~~v~~l~~gp~~~s~l~nsssES~Spg~sGs 165 (414)
|--.|.|+.+|+.+ ++++.+.+.-+...|..+.++- -++|||+|+
T Consensus 19 iaf~Nel~~lce~~--giD~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~ 63 (96)
T PF00984_consen 19 IAFANELARLCEKL--GIDVYEVIEAANTDPRIGPHYL-----RPGPGFGGS 63 (96)
T ss_dssp HHHHHHHHHHHHHH--TSBHHHHHHHHHTSTTTTSSS------S-SSS--SS
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHccCcccccccC-----CCCCCCCCc
Confidence 34468999999997 5666666666777788763322 456788888
No 38
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=22.38 E-value=68 Score=34.26 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=26.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhh
Q 015039 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRL 385 (414)
Q Consensus 353 RK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~ 385 (414)
|-..--||.+|-.++-+|++.||+ ..-.|++.
T Consensus 274 rd~l~~wsEeEcr~FEegl~~yGK-DF~lIr~n 305 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEGLELYGK-DFHLIRAN 305 (445)
T ss_pred ccccccCCHHHHHHHHHHHHHhcc-cHHHHHhc
Confidence 334457999999999999999999 78888753
Done!