Query 015039
Match_columns 414
No_of_seqs 115 out of 246
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2roh_A RTBP1, telomere binding 99.8 2.1E-19 7E-24 154.7 5.2 62 350-411 25-86 (122)
2 2aje_A Telomere repeat-binding 99.8 4E-19 1.4E-23 149.3 4.5 61 351-411 8-68 (105)
3 2juh_A Telomere binding protei 99.7 7.4E-19 2.5E-23 151.0 5.5 69 343-411 4-72 (121)
4 1x58_A Hypothetical protein 49 99.7 1.4E-18 4.6E-23 135.3 4.3 54 354-409 6-59 (62)
5 2ckx_A NGTRF1, telomere bindin 99.7 5.2E-18 1.8E-22 136.9 4.1 55 357-411 1-55 (83)
6 3sjm_A Telomeric repeat-bindin 99.5 8.3E-15 2.8E-19 112.4 4.3 52 356-409 11-62 (64)
7 1ity_A TRF1; helix-turn-helix, 99.4 2.2E-13 7.4E-18 104.3 5.0 60 351-412 5-64 (69)
8 1w0t_A Telomeric repeat bindin 99.4 2.7E-13 9.2E-18 99.1 4.2 51 356-408 2-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 98.9 1.1E-09 3.6E-14 79.2 3.9 48 356-407 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 98.9 1.9E-09 6.5E-14 80.1 4.5 51 354-408 6-56 (60)
11 1gvd_A MYB proto-oncogene prot 98.8 4.9E-09 1.7E-13 75.9 3.9 48 356-407 3-50 (52)
12 1x41_A Transcriptional adaptor 98.7 1E-08 3.4E-13 76.8 3.9 49 356-408 8-56 (60)
13 2dim_A Cell division cycle 5-l 98.7 1.7E-08 5.7E-13 77.2 4.3 51 354-408 7-57 (70)
14 2elk_A SPCC24B10.08C protein; 98.6 1.6E-08 5.5E-13 75.5 4.0 47 357-406 10-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.6 2.6E-08 9E-13 79.3 4.9 53 348-405 10-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.4 1.1E-07 3.8E-12 73.2 3.9 50 355-409 8-57 (72)
17 2din_A Cell division cycle 5-l 98.4 2.4E-07 8.2E-12 70.0 3.7 48 355-408 8-55 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.3 2.5E-07 8.6E-12 71.3 3.5 50 355-408 7-61 (75)
19 2llk_A Cyclin-D-binding MYB-li 98.3 3.5E-07 1.2E-11 72.3 3.9 51 353-409 20-70 (73)
20 1gv2_A C-MYB, MYB proto-oncoge 98.3 5E-07 1.7E-11 72.8 3.8 48 356-407 4-51 (105)
21 2cqr_A RSGI RUH-043, DNAJ homo 98.2 6.2E-07 2.1E-11 70.9 3.1 53 351-407 13-68 (73)
22 3osg_A MYB21; transcription-DN 98.2 8.6E-07 3E-11 74.3 4.2 52 355-411 61-112 (126)
23 3osg_A MYB21; transcription-DN 98.2 9.3E-07 3.2E-11 74.1 4.2 50 353-407 8-57 (126)
24 1h8a_C AMV V-MYB, MYB transfor 98.2 9.5E-07 3.3E-11 73.8 4.0 49 355-407 26-74 (128)
25 2k9n_A MYB24; R2R3 domain, DNA 98.2 1E-06 3.5E-11 71.9 3.7 47 357-407 2-48 (107)
26 1gv2_A C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.7E-11 70.9 3.7 49 355-408 55-103 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 98.1 1.4E-06 4.9E-11 71.0 3.9 49 355-408 52-100 (107)
28 1h8a_C AMV V-MYB, MYB transfor 98.1 2.4E-06 8.2E-11 71.4 3.9 49 355-408 78-126 (128)
29 3zqc_A MYB3; transcription-DNA 98.0 2.9E-06 9.8E-11 71.4 3.8 49 356-409 54-102 (131)
30 3zqc_A MYB3; transcription-DNA 98.0 2.5E-06 8.4E-11 71.8 3.1 47 357-407 3-49 (131)
31 2ltp_A Nuclear receptor corepr 97.2 1.1E-06 3.8E-11 70.7 0.0 49 357-410 17-65 (89)
32 1h89_C C-MYB, MYB proto-oncoge 97.8 8.7E-06 3E-10 70.1 3.8 49 355-407 57-105 (159)
33 1h89_C C-MYB, MYB proto-oncoge 97.8 1.4E-05 5E-10 68.7 4.0 49 355-408 109-157 (159)
34 2eqr_A N-COR1, N-COR, nuclear 97.5 9.6E-05 3.3E-09 55.6 4.6 54 349-407 5-58 (61)
35 2cjj_A Radialis; plant develop 97.5 5.2E-05 1.8E-09 62.4 3.3 47 357-407 9-58 (93)
36 3hm5_A DNA methyltransferase 1 97.3 0.00018 6E-09 59.8 3.7 51 357-408 31-82 (93)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.2 0.00023 7.7E-09 56.0 3.6 48 356-408 8-58 (72)
38 1ign_A Protein (RAP1); RAP1,ye 97.2 0.00019 6.4E-09 68.5 3.2 50 356-409 8-62 (246)
39 4b4c_A Chromodomain-helicase-D 97.1 0.00039 1.4E-08 61.6 4.7 50 357-406 135-194 (211)
40 2ebi_A DNA binding protein GT- 96.6 0.00037 1.3E-08 54.8 0.1 55 354-409 2-66 (86)
41 2xb0_X Chromo domain-containin 96.4 0.002 6.7E-08 61.7 3.7 29 358-386 170-198 (270)
42 2iw5_B Protein corest, REST co 96.3 0.0028 9.6E-08 60.2 4.2 52 352-408 129-180 (235)
43 2yqk_A Arginine-glutamic acid 96.1 0.0062 2.1E-07 46.2 4.5 50 352-405 5-54 (63)
44 4iej_A DNA methyltransferase 1 95.9 0.0053 1.8E-07 51.2 3.5 50 357-407 31-81 (93)
45 2crg_A Metastasis associated p 95.7 0.0097 3.3E-07 46.2 4.2 48 352-403 4-51 (70)
46 1wgx_A KIAA1903 protein; MYB D 95.6 0.0066 2.2E-07 48.4 3.1 48 357-408 9-59 (73)
47 4b4c_A Chromodomain-helicase-D 94.9 0.014 4.9E-07 51.6 3.1 55 352-408 3-59 (211)
48 1irz_A ARR10-B; helix-turn-hel 93.3 0.093 3.2E-06 41.0 4.5 53 352-406 3-60 (64)
49 1ofc_X ISWI protein; nuclear p 93.3 0.029 1E-06 54.6 1.9 52 357-408 213-275 (304)
50 2xag_B REST corepressor 1; ami 93.1 0.061 2.1E-06 55.4 4.1 48 353-405 377-424 (482)
51 2y9y_A Imitation switch protei 91.7 0.061 2.1E-06 53.9 2.0 52 357-408 229-291 (374)
52 4a69_C Nuclear receptor corepr 91.0 0.1 3.6E-06 42.5 2.4 47 351-402 38-84 (94)
53 1fex_A TRF2-interacting telome 90.2 0.21 7.2E-06 37.7 3.2 49 356-407 2-58 (59)
54 4eef_G F-HB80.4, designed hema 87.8 0.12 4.3E-06 41.6 0.5 44 356-403 20-66 (74)
55 2xb0_X Chromo domain-containin 87.4 0.44 1.5E-05 45.6 4.1 54 355-410 2-57 (270)
56 3ukw_C Bimax1 peptide; arm rep 58.0 5.6 0.00019 26.6 2.0 16 313-332 3-18 (28)
57 1ign_A Protein (RAP1); RAP1,ye 52.0 8.8 0.0003 36.8 3.1 31 377-411 172-202 (246)
58 1ug2_A 2610100B20RIK gene prod 44.9 16 0.00054 30.8 3.2 53 354-410 31-85 (95)
59 2lr8_A CAsp8-associated protei 50.0 4.8 0.00016 32.3 0.0 48 357-409 15-64 (70)
60 1ofc_X ISWI protein; nuclear p 34.4 24 0.00083 34.4 3.2 45 352-400 106-150 (304)
61 2q2k_A Hypothetical protein; p 27.1 8.7 0.0003 30.2 -1.0 20 251-270 49-68 (70)
62 3ukx_C Bimax2 peptide; arm rep 24.5 37 0.0013 22.7 1.8 11 324-334 10-20 (28)
63 3lqv_P Splicing factor 3B subu 21.5 39 0.0013 24.4 1.5 14 355-368 19-32 (39)
64 2xag_B REST corepressor 1; ami 20.9 21 0.0007 37.0 0.0 27 357-384 190-216 (482)
No 1
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.77 E-value=2.1e-19 Score=154.68 Aligned_cols=62 Identities=29% Similarity=0.520 Sum_probs=57.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 350 ~~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
..+||++++||.||+++|++||++||.|+|+.|++.+|..|.+||+||||||||||+|+..+
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 46788889999999999999999999999999999988778899999999999999987654
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.75 E-value=4e-19 Score=149.33 Aligned_cols=61 Identities=28% Similarity=0.573 Sum_probs=55.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 351 ~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
.+|+++++||.||+++|++||++||.|+|+.|++.+|..|.+||+||||||||||+|.+.+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 4677778999999999999999999999999999988778899999999999999987765
No 3
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=7.4e-19 Score=151.05 Aligned_cols=69 Identities=28% Similarity=0.521 Sum_probs=60.7
Q ss_pred ccCCcccccccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 343 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 343 p~~k~k~~~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
+++++....+|+++++||.||+++|++||++||.|+|+.|++.+|+.|.+||+||||||||||++...+
T Consensus 4 ~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 4 QKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred ccCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 344444456788889999999999999999999999999999998888999999999999999986554
No 4
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.4e-18 Score=135.32 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
+++++||.||+++|++||++||. +|++|+..|.+ |..||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 45678999999999999999999 99999998755 67999999999999999865
No 5
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.70 E-value=5.2e-18 Score=136.94 Aligned_cols=55 Identities=29% Similarity=0.598 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
++||.||+++|++||++||.|+|+.|++.+|..|..||+||||||||||+|++.+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 5899999999999999999999999999988778899999999999999987765
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=8.3e-15 Score=112.41 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
+++||.||.++|+++|++||.|+|+.|.+.++. ..||+++++||||||+|..
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~--~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF--VNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC--SSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCC--CCCCHHHHHHHHHHHhccC
Confidence 457999999999999999999999999988753 5899999999999999864
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.39 E-value=2.2e-13 Score=104.27 Aligned_cols=60 Identities=20% Similarity=0.398 Sum_probs=51.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhcccc
Q 015039 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQLF 412 (414)
Q Consensus 351 ~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~~ 412 (414)
..|+++.+||.||.++|+++|++||.|+|+.|...+. |..||+++++++|+|+++..-++
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCCC
Confidence 4566677999999999999999999999999998764 34899999999999999876543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.37 E-value=2.7e-13 Score=99.08 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
+.+||.||.++|+++|++||.++|+.|...+. |..||+++++++|+|++|+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 46899999999999999999999999998764 3479999999999999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.88 E-value=1.1e-09 Score=79.21 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+.+||.||.+.|+++|++||.++|+.|...+ ..||+.+.+++|+|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999999998764 37999999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.85 E-value=1.9e-09 Score=80.06 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
.++.+||.||.+.|+++|++||.++|+.|...+ ..||..+.+++|+|+++-
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCC
Confidence 345689999999999999999999999998774 379999999999998763
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.76 E-value=4.9e-09 Score=75.86 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+.+||.||.+.|+++|++||.++|+.|...+ ..||+.+.+++|.|.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999999998763 47999999999999875
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.69 E-value=1e-08 Score=76.78 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
+.+||.+|.+.|+++|++||.++|+.|.+... .||+.+.+++|.|.+.-
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccC
Confidence 45799999999999999999999999998763 69999999999998653
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=77.19 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
.++.+||.+|.+.|+++|++||.++|+.|.... ..||+.+.+++|+|.++-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCC
Confidence 344589999999999999999999999998764 379999999999998764
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.65 E-value=1.6e-08 Score=75.51 Aligned_cols=47 Identities=30% Similarity=0.572 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLY 406 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~ 406 (414)
.+||.+|.+.|+++|++||.++|+.|.+.... .||+.+.+++|.|..
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~---~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYVGN---ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCS---SCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCC---CCCHHHHHHHHHHHc
Confidence 47999999999999999999999999877642 699999999998863
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.63 E-value=2.6e-08 Score=79.28 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=46.1
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhh
Q 015039 348 KIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFL 405 (414)
Q Consensus 348 k~~~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL 405 (414)
+.+..+..+.+||.+|.+.|+++|++|| ++|.+|.+..- .||..+.+.+|.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 3445566677999999999999999999 99999998652 69999999999998
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=1.1e-07 Score=73.22 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
++.+||.||.+.|+++|++||. +|+.|.+.+ . .||..++|.+|.++++..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~---~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-G---SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-S---SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-C---CCCHHHHHHHHHHHHHHH
Confidence 4468999999999999999999 999998843 3 699999999999987653
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.4e-07 Score=70.04 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|++.|++||. +|+.|.. +. .||..+.|++|.++++.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhCh
Confidence 3458999999999999999999 9999998 43 49999999999999764
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.5e-07 Score=71.32 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC-----CchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGv-----G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
.+.+||.||.+.|+++|++||. ++|..|....- .||..+.+.+|.+.++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 4458999999999999999997 79999987752 69999999999777543
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.31 E-value=3.5e-07 Score=72.34 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=44.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 353 RK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
.-++.+||.||.+.|++.|++||. +|+.|.+.+ .||..++|++|+.|.+.+
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-----gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-----GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-----TSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-----CCCHHHHHHHHHHHHHHc
Confidence 344568999999999999999998 599998875 499999999999987754
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.26 E-value=5e-07 Score=72.81 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+.+||.||.+.|+++|++||.++|..|.... ..||+.+.+++|+|.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccC
Confidence 3589999999999999999999999998643 47999999999999764
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.21 E-value=6.2e-07 Score=70.88 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=45.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhCC---CchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 351 DRRKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 351 ~rRK~rr~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+.+....+||.+|...|+.+|++||. .+|.+|.+... .||..+.+.+|.+|++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 34556678999999999999999995 58999987653 6999999999999975
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.20 E-value=8.6e-07 Score=74.30 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
++.+||.||.+.|+++|++||. +|+.|... + ..||..++|++|++|++.-.+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~-l---~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF-F---PGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT-S---TTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH-c---CCCCHHHHHHHHHHHHHhcCC
Confidence 3458999999999999999995 99999863 2 479999999999999876543
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.20 E-value=9.3e-07 Score=74.12 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=43.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 353 RK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
..++.+||.||.+.|+++|++||. +|..|.... ..||+.+.+++|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcc
Confidence 344468999999999999999999 999997653 37999999999999764
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.18 E-value=9.5e-07 Score=73.77 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
++.+||.||.+.|+++|++||.++|..|.... ..||+.+.+++|.|.+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcc
Confidence 34689999999999999999999999998754 37999999999999764
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.17 E-value=1e-06 Score=71.88 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
.+||.||.+.|+++|++||.++|..|.... ..||+.+.+++|+|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHc
Confidence 479999999999999999999999998754 37999999999999764
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.16 E-value=1.1e-06 Score=70.86 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|+++|++||. +|+.|.+. + ..||..++|++|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~-l---~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL-L---PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT-C---TTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH-c---CCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999996 99999863 2 479999999999999875
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.13 E-value=1.4e-06 Score=71.00 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|+++|.+||. +|+.|.+.+ ..||..++|++|++|++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999998 999998753 379999999999999875
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.05 E-value=2.4e-06 Score=71.36 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.||.+.|+++|++||. +|+.|.+. + ..||..++|++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~-l---~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL-L---PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG-S---TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH-C---CCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999997 99999864 3 379999999999999875
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.02 E-value=2.9e-06 Score=71.43 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
+.+||.||.+.|+++|.+||. +|+.|... + ..||..++|++|+++++..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~-l---~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKL-I---PGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTT-S---TTCCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHH-c---CCCCHHHHHHHHHHHHHHH
Confidence 458999999999999999995 99999863 2 3799999999999998754
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.01 E-value=2.5e-06 Score=71.83 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
.+||.||.+.|+++|.+||.++|..|.... ..||+.+..++|+|.+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccC
Confidence 479999999999999999999999997643 37999999999999764
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=70.74 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhhcc
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~ 410 (414)
.+||.+|.+.|+++|++||. +|+.|.... ..||..++|.+|.++++...
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 47999999999999999999 899998653 37999999999999887643
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.85 E-value=8.7e-06 Score=70.08 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
.+.+||.+|.+.|+++|++||.++|+.|.... ..||+.+.+++|+|.+.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999999998643 37999999999999765
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.78 E-value=1.4e-05 Score=68.69 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
++.+||.+|.+.|+++|++||. +|+.|.+. + ..||..++|.+|+.|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~-l---~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL-L---PGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT-S---TTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH-C---CCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999997 99999863 2 479999999999999875
No 34
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=9.6e-05 Score=55.63 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=44.5
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 349 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 349 ~~~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
..+.|+...+||.+|.+.+++|+.+||. +|..|.. +. ..||..++...|....|
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l---~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YL---ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HC---TTSCHHHHHHHHHHHTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-Hc---CCCCHHHHHHHHHHhcC
Confidence 3456677889999999999999999996 9999983 33 37999999988866554
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.50 E-value=5.2e-05 Score=62.38 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
..||.+|...|+.+|.+||. .+|.+|..... .||..+.|.+|.+|++
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE----GRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 47999999999999999995 47999998763 6999999999999964
No 36
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=59.77 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhC-CCCCCCCCCccchhhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F-~~f~~RT~VDLKDKWRNL~K~ 408 (414)
..||.||++.|.+-+++||. +|..|.+.|- ..+..||-.|||++|..+.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999 9999998873 233579999999999777553
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.20 E-value=0.00023 Score=56.02 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
...||.+|...|.++|++|+. .+|.+|.... .||..+++.+|..|.+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 457999999999999999995 5799999874 49999999999999765
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.15 E-value=0.00019 Score=68.48 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCc-----hHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 356 QRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG~-----Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
+.+||.||.+.|++.|++||..+ |+.|... +.+||.-++|++|++.++..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhh
Confidence 34899999999999999999964 9999863 34899999999999988764
No 39
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.11 E-value=0.00039 Score=61.58 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCC----------CCCCCCccchhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS----------SHRTPIDLRVFFIFLY 406 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f----------~~RT~VDLKDKWRNL~ 406 (414)
..||.+|...|+.||.+||.|+|..|+++....| ..++++.|.-+=-.|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll 194 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLI 194 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHH
Confidence 4699999999999999999999999998743222 3455566666644343
No 40
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.58 E-value=0.00037 Score=54.83 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHh----hCCC-----chHhhHhhhCC-CCCCCCCCccchhhhhhhhhc
Q 015039 354 KNQRMWTLSEVMKLIDGISQ----FGVG-----KWTDIKRLLFS-SSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~k----yGvG-----~Wt~Il~~~F~-~f~~RT~VDLKDKWRNL~K~~ 409 (414)
|...+||.+|+.+|++.... |..| .|..|....-. .| .||+.+.++||.||.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHH
Confidence 34457999999999999874 3222 69999764211 11 699999999999998763
No 41
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.36 E-value=0.002 Score=61.71 Aligned_cols=29 Identities=38% Similarity=0.700 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCchHhhHhhh
Q 015039 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLL 386 (414)
Q Consensus 358 ~WT~eEveaLv~GV~kyGvG~Wt~Il~~~ 386 (414)
.|+.+|...|..||-+||.|+|..|+.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 59999999999999999999999999874
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.28 E-value=0.0028 Score=60.16 Aligned_cols=52 Identities=17% Similarity=0.422 Sum_probs=44.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
.+|...+||.+|.+.+++|+++||. +|..|.+.. ..||..+.|..|.+-.|.
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 3355668999999999999999998 899998764 369999999999877654
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.0062 Score=46.24 Aligned_cols=50 Identities=22% Similarity=0.559 Sum_probs=39.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFL 405 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL 405 (414)
.+.....||.+|.+...+|+.+||. +|..|.+.+.. .||-.++..-+-.-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~---~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP---NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT---TSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC---CCcHHHHHHHHhcc
Confidence 3444568999999999999999999 89999876544 68888887665433
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.88 E-value=0.0053 Score=51.17 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHhhhC-CCCCCCCCCccchhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F-~~f~~RT~VDLKDKWRNL~K 407 (414)
..||.||++.|.+-+++|+. +|--|.+.|- ..+..||-=|||++|-.+.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999998 9999999874 33458999999999966543
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.71 E-value=0.0097 Score=46.19 Aligned_cols=48 Identities=13% Similarity=0.404 Sum_probs=39.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFI 403 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWR 403 (414)
.|+....||.+|.....+|+.+||. +|..|.+.+.. .||-.++..-+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~---~Kt~~~~v~fYY 51 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP---WKSLTSIIEYYY 51 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS---SSCHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC---CCCHHHHHHHHH
Confidence 3566779999999999999999999 89999875443 688888776544
No 46
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.64 E-value=0.0066 Score=48.38 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
..||.+|..+|..++..|+. ++|.+|....- .||.-+.+.+|.-|.+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 46999999999999999987 68999998663 49999999999988654
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.87 E-value=0.014 Score=51.59 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=42.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhC--CCchHhhHhhhCCCCCCCCCCccchhhhhhhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyG--vG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~ 408 (414)
+|...+.||..|...|+.++.+|| .++|..|..+.- +..+|.-+|++=.+.++..
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999 689999998743 4578999999866665543
No 48
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.32 E-value=0.093 Score=40.99 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCc--hHhhHhhhCCCCCCCCCCccc---hhhhhhh
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGK--WTDIKRLLFSSSSHRTPIDLR---VFFIFLY 406 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~--Wt~Il~~~F~~f~~RT~VDLK---DKWRNL~ 406 (414)
.+|++-+||.|.-+..+++|+++|..+ |+.|++...- ...|..++| -|||.-+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v--~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNV--DKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC--TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCC--CCCCHHHHHHHHHHHHHHH
Confidence 467788999999999999999999543 8899987543 366777777 4555443
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.26 E-value=0.029 Score=54.64 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchHhhHhhh-------CCC-CCCCCCCccchhhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~-------F~~-f~~RT~VDLKDKWRNL~K~ 408 (414)
+.||.+|...|+-++.+||. |+|..|+... |+- +..||++.|..+=..|+++
T Consensus 213 k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 213 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 47999999999999999999 9999997531 221 2589999999998888764
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.09 E-value=0.061 Score=55.37 Aligned_cols=48 Identities=19% Similarity=0.518 Sum_probs=38.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhhhhh
Q 015039 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFFIFL 405 (414)
Q Consensus 353 RK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL 405 (414)
.|..-+||.+|...+++||.+||. +|..|.... ..||..+.|.-|.+.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~V----gTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHH----SSCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 345568999999999999999999 999998764 247777777666443
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.69 E-value=0.061 Score=53.88 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchHhhHhhh-------CCC-CCCCCCCccchhhhhhhhh
Q 015039 357 RMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRVFFIFLYLI 408 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGv---G~Wt~Il~~~-------F~~-f~~RT~VDLKDKWRNL~K~ 408 (414)
+.||.+|...|+-+|.+||+ |+|..|+... |+- |..||++.|..+=..|+++
T Consensus 229 k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 229 RTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 47999999999999999999 9999997651 221 2589999999998888765
No 52
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=91.00 E-value=0.1 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=36.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccchhh
Q 015039 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRVFF 402 (414)
Q Consensus 351 ~rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKDKW 402 (414)
+.|+....||.+|.+...+|+..||. +|..|. .+. ..||-.++-.-+
T Consensus 38 ~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l---~~Kt~~~cV~~Y 84 (94)
T 4a69_C 38 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFL---ERKTVAECVLYY 84 (94)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTC---TTCCHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHc---CCCCHHHHHHHH
Confidence 34567789999999999999999999 899994 333 368877665433
No 53
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=90.20 E-value=0.21 Score=37.69 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCchHhhHhhhCCCCCCCCCCccchhhhhhhh
Q 015039 356 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYL 407 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~ky--------GvG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K 407 (414)
+.+||.||..+|++=|.+| |.--|+.|.+.. ...+|---.+|+|++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 656799987622 247999999999987543
No 54
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=87.83 E-value=0.12 Score=41.58 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---chHhhHhhhCCCCCCCCCCccchhhh
Q 015039 356 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRVFFI 403 (414)
Q Consensus 356 rr~WT~eEveaLv~GV~kyGvG---~Wt~Il~~~F~~f~~RT~VDLKDKWR 403 (414)
-..||.+|..+|..++.+|..+ +|.+|..... .||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp----GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK----GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC----SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC----CCCHHHHHHHHH
Confidence 3579999999999999999987 8999987654 478877776553
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.36 E-value=0.44 Score=45.60 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCchHhhHhhhCCCCCCCCCCccchhhhhhhhhcc
Q 015039 355 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 355 ~rr~WT~eEveaLv~GV~kyG--vG~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~ 410 (414)
+++.||..|+..|+.++.+|| .++|..|..+. .+..+...+|+.=+..|+..++
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999 58999999773 4568999999988888876654
No 56
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=58.04 E-value=5.6 Score=26.64 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=9.2
Q ss_pred ccCCCCCCCCcccccCCCCC
Q 015039 313 RGGRLKKRSPILGFESDDDI 332 (414)
Q Consensus 313 Rrgr~~kn~S~~~~E~Dde~ 332 (414)
||.||+| +.+|||.++
T Consensus 3 rrrrprk----rplewdede 18 (28)
T 3ukw_C 3 RRRRPRK----RPLEWDEDE 18 (28)
T ss_dssp ----CCC----CCCCCCGGG
T ss_pred ccccccc----CCccccccc
Confidence 5667777 789998654
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=52.00 E-value=8.8 Score=36.79 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=24.2
Q ss_pred CchHhhHhhhCCCCCCCCCCccchhhhhhhhhccc
Q 015039 377 GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQL 411 (414)
Q Consensus 377 G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~~ 411 (414)
+.|+.|.+.+ .+||.+-.||+||.+++...+
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~gi 202 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAYGI 202 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHHCH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhcCh
Confidence 3688887664 369999999999998876543
No 58
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.85 E-value=16 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CchHhhHhhhCCCCCCCCCCccchhhhhhhhhcc
Q 015039 354 KNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIEQ 410 (414)
Q Consensus 354 K~rr~WT~eEveaLv~GV~kyGv--G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~~ 410 (414)
..-..||.+|...++...++-|. -.|+.|.... .+||.-+++++++.|++..+
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHHH
Confidence 34468999999999999999887 4688876554 46999999999999987643
No 59
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=50.02 E-value=4.8 Score=32.26 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHhhCC--CchHhhHhhhCCCCCCCCCCccchhhhhhhhhc
Q 015039 357 RMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRVFFIFLYLIE 409 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGv--G~Wt~Il~~~F~~f~~RT~VDLKDKWRNL~K~~ 409 (414)
..||.||...+....++-|. -.|+.|.. .+ +||+-+++++++.|++.-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~----~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAA----KL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 57999999999999999876 35666653 33 699999999999998754
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=34.39 E-value=24 Score=34.38 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=35.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCCchHhhHhhhCCCCCCCCCCccch
Q 015039 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRV 400 (414)
Q Consensus 352 rRK~rr~WT~eEveaLv~GV~kyGvG~Wt~Il~~~F~~f~~RT~VDLKD 400 (414)
....-..||..+-.+++.|+.+||..+|..|..... ..|.-+++.
T Consensus 106 l~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~----~Kt~eEV~~ 150 (304)
T 1ofc_X 106 LSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE----GKTPEEVIE 150 (304)
T ss_dssp TTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST----TCCHHHHHH
T ss_pred HHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc----CCCHHHHHH
Confidence 344455799999999999999999999999987653 346655553
No 61
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=27.08 E-value=8.7 Score=30.15 Aligned_cols=20 Identities=45% Similarity=0.798 Sum_probs=16.5
Q ss_pred ccccccccCcchhhhhcccC
Q 015039 251 GTKVKRLRKPTKRYIEESSD 270 (414)
Q Consensus 251 g~~~Kr~rkptkRYIEE~Sd 270 (414)
|.+.--||...+|||||+-+
T Consensus 49 gtktahirealrryieeige 68 (70)
T 2q2k_A 49 GTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp TCHHHHHHHHHHHHHHHCC-
T ss_pred ccchHHHHHHHHHHHHHhcc
Confidence 46777899999999999865
No 62
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=24.47 E-value=37 Score=22.74 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=7.5
Q ss_pred ccccCCCCCCC
Q 015039 324 LGFESDDDIFS 334 (414)
Q Consensus 324 ~~~E~Dde~~~ 334 (414)
++-||||++++
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 46788887654
No 63
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=21.55 E-value=39 Score=24.44 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.4
Q ss_pred CCCCCCHHHHHHHH
Q 015039 355 NQRMWTLSEVMKLI 368 (414)
Q Consensus 355 ~rr~WT~eEveaLv 368 (414)
++|+||+||.+++.
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 45799999999874
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=20.95 E-value=21 Score=37.00 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchHhhHh
Q 015039 357 RMWTLSEVMKLIDGISQFGVGKWTDIKR 384 (414)
Q Consensus 357 r~WT~eEveaLv~GV~kyGvG~Wt~Il~ 384 (414)
..||.+|...+.+|+.+||. +|..|.+
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~ 216 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ 216 (482)
T ss_dssp ----------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH
Confidence 47999999999999999999 8999974
Done!