Your job contains 1 sequence.
>015040
MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL
DQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL
TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE
VKRALPKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGGFPPFSGYGAAG
YGYGAASGGVGYGGYGGYGMGGYGSTGPGFGGPAGAYGNPNAGFISAAPGALKSSWGSQN
PSGYGTSGYDANAGYGANRGSAVSPLGHSSSGASGYGNQGYGYGNYGGSSGPYSGGYGAA
GGRAGSGAGGENEYGDTNGNSGYTNASWRSDSSQTSSGYSGGYGGAHSRQAQQQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015040
(414 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 718 1.2e-75 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 695 1.2e-75 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 614 1.1e-62 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 591 6.9e-61 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 587 2.0e-59 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 440 4.1e-45 2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 438 9.6e-44 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 257 6.4e-43 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 234 1.6e-42 3
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 234 1.6e-42 3
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 414 2.2e-42 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 222 2.6e-42 3
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 244 2.8e-42 2
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 446 4.0e-42 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 244 4.6e-42 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 221 6.9e-42 3
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 231 8.7e-42 3
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 442 1.1e-41 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 441 1.4e-41 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 441 1.4e-41 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 441 1.4e-41 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 440 1.7e-41 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 440 1.7e-41 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 440 1.7e-41 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 439 2.2e-41 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 436 4.6e-41 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 231 5.9e-41 3
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 243 9.5e-41 3
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 237 9.6e-41 3
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 433 9.6e-41 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 432 1.2e-40 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 432 1.2e-40 1
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 431 1.6e-40 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 395 1.7e-40 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 242 2.7e-40 3
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 222 3.2e-40 3
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 248 6.6e-40 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 424 8.7e-40 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 422 1.4e-39 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 415 7.8e-39 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 227 1.5e-38 3
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 388 1.7e-38 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 409 3.4e-38 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 215 3.8e-38 3
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 234 4.5e-38 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 234 4.5e-38 2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 234 4.5e-38 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 407 5.5e-38 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 219 6.2e-38 3
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 406 7.0e-38 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 223 7.8e-38 3
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 404 1.1e-37 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 404 1.1e-37 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 404 1.1e-37 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 231 1.9e-37 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 216 2.0e-37 3
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 401 2.4e-37 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 231 2.4e-37 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 231 4.0e-37 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 212 5.3e-37 3
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 229 8.3e-37 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 219 1.3e-36 2
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 212 1.8e-36 3
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 211 5.1e-36 3
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 211 5.1e-36 3
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 207 7.4e-36 3
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 350 9.2e-36 2
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 216 1.0e-35 3
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 216 1.0e-35 3
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 216 1.0e-35 3
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 355 1.9e-35 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 348 1.9e-35 2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 353 3.1e-35 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 353 3.1e-35 2
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 200 3.1e-35 3
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 200 3.1e-35 3
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 207 3.8e-35 3
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 207 3.8e-35 3
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 207 3.8e-35 3
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 207 3.8e-35 3
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 355 3.9e-35 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 353 5.0e-35 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 348 5.0e-35 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 348 5.0e-35 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 348 5.0e-35 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 348 5.0e-35 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 348 5.0e-35 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 348 5.0e-35 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 348 5.0e-35 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 346 5.0e-35 2
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 344 5.0e-35 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 201 5.0e-35 3
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 351 1.0e-34 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 351 1.0e-34 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 351 1.0e-34 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 351 1.0e-34 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 351 1.0e-34 2
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 351 1.0e-34 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 350 1.3e-34 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 217 1.3e-34 2
WARNING: Descriptions of 978 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 718 (257.8 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 138/239 (57%), Positives = 170/239 (71%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M+SD+GKLF+GGI+W+T E LR++FT +G+VSQ ++MRDK TGRPRGFGFV+FSDPSVL
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXX-XYFKTKKIFVGGLPPT 119
D+VLQ+KH+ID R V+ KRA+SREEQ Y KTKKIFVGGLPPT
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
LT++ FRQYFE YG VTDV +MYDQ T RPRGFGF++F++EDAVD+VL K FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 180 EVKRALPKDXX-----XXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAGGFPPF 233
EVKRALPKD N SS+DGR+D NR++Q QS G P +
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSY 239
Score = 63 (27.2 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 291 ALKSSWGSQNPSGYGTSGYD---ANAGYGANRGSAV---SPLGH 328
A ++SW + SGYG GY A++GYG G+A SP G+
Sbjct: 295 APRNSWDTPASSGYGNPGYGSGAAHSGYGVP-GAAPPTQSPSGY 337
Score = 56 (24.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 289 PGALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
PGA + Q+PSGY GY GYG GS
Sbjct: 325 PGAAPPT---QSPSGYSNQGY----GYGGYSGS 350
Score = 55 (24.4 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
S G+ PS YG+SGY A G G+N G+ G
Sbjct: 231 SVGNGLPS-YGSSGYGAGYGNGSN-GAGYGAYG 261
Score = 49 (22.3 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 295 SWGSQNPSGYGTS-GYDAN-AGYGANRGSAVSPLGH 328
S+GS SGYG G +N AGYGA G S G+
Sbjct: 238 SYGS---SGYGAGYGNGSNGAGYGAYGGYTGSAGGY 270
Score = 45 (20.9 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 286 SAAPGALKSSWGSQNPS-GYGTSGYDANAGYGANRGSAVSPLGH 328
S+ G + S+ Q+ S G G Y ++GYGA G+ + G+
Sbjct: 215 SSYDGRMDSNRFLQHQSVGNGLPSY-GSSGYGAGYGNGSNGAGY 257
Score = 44 (20.5 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G S GS NP G+ GY GYG
Sbjct: 364 GGRPSGGGSNNP---GSGGY-MGGGYG 386
Score = 41 (19.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 295 SWGSQNPSGYGTSGYDANAG 314
SW S GYG GY+ G
Sbjct: 389 SWRSDPSQGYG-GGYNDGQG 407
Score = 41 (19.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGA 317
GA ++G S G G A AGYGA
Sbjct: 254 GAGYGAYGGYTGSA-GGYGAGATAGYGA 280
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 695 (249.7 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 135/241 (56%), Positives = 162/241 (67%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
MESD+GKLFIGGI+WDT E LR+YF+ FG+V QV +MR+K TGRPRGFGFV FSDP+V+
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQH-XXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPT 119
D+VLQDKH ID R V+ KRA+SREEQ +TKKIFVGGLPP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
LT D FR YFE YG V+D V+M DQ TQRPRGFGF++F++ED+VD VL K FH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 180 EVKRALPKDXXXXXXXXXXXXXXXXX-------XNTSSFDGRLDGNRYMQTQSNAGGFPP 232
EVKRALPKD S ++GR+D NRYMQ Q+ G+PP
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPP 240
Query: 233 F 233
+
Sbjct: 241 Y 241
Score = 86 (35.3 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 293 KSSWGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
+SSWG+Q PSGYG GY A +G + G + +G
Sbjct: 288 RSSWGAQAPSGYGNVGYGNAAPWGGSGGPGSAVMG 322
Score = 54 (24.1 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 297 GSQNPSGYGTSGYDANAGYGAN 318
GS P YG SGY GYG+N
Sbjct: 235 GSGYPP-YGGSGYGTGYGYGSN 255
Score = 54 (24.1 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 286 SAAPG-ALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVSP 325
S PG A+ G+ +GYG+ GY GYG N S +P
Sbjct: 313 SGGPGSAVMGQAGAS--AGYGSQGY----GYGGNDSSYGTP 347
Score = 50 (22.7 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 287 AAPGALKSSWGSQNPSGYGTSGY----DANAGYGANRGS 321
+A GA+ G+ P+ +G GY D + GYG ++G+
Sbjct: 348 SAYGAVGGRSGNM-PNNHGGGGYADALDGSGGYGNHQGN 385
Score = 46 (21.3 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 303 GYGT-SGYDANAGYGANRGS 321
GYG G + AGYG GS
Sbjct: 378 GYGNHQGNNGQAGYGGGYGS 397
Score = 40 (19.1 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 303 GYGTSG--YDANAGYGANRGS 321
GYG++G Y GYG G+
Sbjct: 251 GYGSNGVGYGGFGGYGNPAGA 271
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 614 (221.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 116/189 (61%), Positives = 143/189 (75%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
MESD GKLFIGGI+WDT E LRDYF+ +GDV + VIMRD+ TGR RGFGF+VF+DP V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXX-XXXXYFKTKKIFVGGLPPT 119
++V+ DKH IDGR VEAK+A+ R++Q +TKKIFVGGLP +
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+TE+ F+ YF+ +G + DVVVMYD NTQRPRGFGFITF+++DAVD VL K FHELNGKLV
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 180 EVKRALPKD 188
EVKRA+PK+
Sbjct: 181 EVKRAVPKE 189
Score = 44 (20.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 285 ISAAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVSP 325
++ + G + +WG + S YG + G + SP
Sbjct: 329 LNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSP 369
Score = 40 (19.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGS 321
WG++ + G G++ N G NRG+
Sbjct: 316 WGNRTDTA-GP-GWNLNVSNGNNRGN 339
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 591 (213.1 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 110/188 (58%), Positives = 144/188 (76%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M+SD GKLFIGGI+WDT E L++YF+ FG+V + VI++D+TTGR RGFGFVVF+DP+V
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
+ V+ +KH IDGR VEAK+A+ R++Q+ +T+KIFVGGLP ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG-RTRKIFVGGLPSSV 119
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
TE F+ YFE +G TDVVVMYD NTQRPRGFGFIT+++E+AV+ VL K FHELNGK+VE
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Query: 181 VKRALPKD 188
VKRA+PK+
Sbjct: 180 VKRAVPKE 187
Score = 50 (22.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 287 AAPGALKSSWGSQNPSGYGTSGYDANAGYGA 317
AAP + SS + N +GY T+G G GA
Sbjct: 405 AAPSSSFSSASATNNTGYDTAGLAEFYGNGA 435
Score = 41 (19.5 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
+WG+ S + GYG N G + LG
Sbjct: 360 NWGAPGGGNNAVSNENVKFGYGGN-GESGFGLG 391
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 587 (211.7 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 111/190 (58%), Positives = 142/190 (74%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
SD GKLFIGGI+WDT E L++YF ++GD+ + VIMRD+TTGR RGFGF+VF+DPSV ++
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VLQDKHTIDGRPVEAKRALSREEQHXXXXXXX----XXXXXXXXXXYFKTKKIFVGGLPP 118
V+ DKH IDGR VEAK+A+ R++Q +TKKIFVGGLP
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
++TE F+ YF+ +G + DVVVMYD NTQRPRGFGFITF++E++VD VL K FHELNGK+
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 179 VEVKRALPKD 188
VEVKRA+PK+
Sbjct: 192 VEVKRAVPKE 201
Score = 40 (19.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 287 AAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVS 324
A P L S+ +++P GY N G NR SA S
Sbjct: 197 AVPKELSSTTPNRSP----LIGYGNNYGVVPNRSSANS 230
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 440 (159.9 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 91/187 (48%), Positives = 119/187 (63%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S GKLF+GG++W+TT T +YF +FG+V VIM D+ TG PRGFGFV F+D +V ++
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
Query: 63 VLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
VL++ H ID R V+ KR L R ++ KT+KIFVGGLPP L E
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVS------------KTRKIFVGGLPPLLEE 170
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ--KVFHELNGKLVE 180
D + YF YG + + +MYD +T R RGFGF+TF+TED+VD + KV HEL K VE
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKV-HELGDKQVE 229
Query: 181 VKRALPK 187
+KRA PK
Sbjct: 230 IKRAEPK 236
Score = 51 (23.0 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 307 SGYDANAGYGANRG-SAVSPLG 327
SGY GYGA G S V+P G
Sbjct: 271 SGYGGYGGYGAYAGNSMVNPAG 292
Score = 47 (21.6 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 300 NPSGYGTSGYDANAGYGANRGSAVSPLGH 328
NP+G+ GY GYG G + +G+
Sbjct: 289 NPAGF--YGYGGGYGYGYGYGGQMFNMGY 315
Score = 45 (20.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 303 GYGTSGYDANAGYGA 317
GYG G N GYGA
Sbjct: 303 GYGYGGQMFNMGYGA 317
Score = 40 (19.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 291 ALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
A +++G G G +G + G G N GS
Sbjct: 330 AAAAAYGGGKSHGNGNNGSSSGKGNGTN-GS 359
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 438 (159.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 89/190 (46%), Positives = 118/190 (62%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
+ DE GKLF+GG+ W TT+ TLR+YF+++G+V VIM+DK+T + RGFGFV F DP+
Sbjct: 5 LAGDEIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNC 64
Query: 60 LDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
+ VL K H +DGR ++ K R Q K+KKIFVGG+P
Sbjct: 65 VRTVLDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSN--KSKKIFVGGIPH 122
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
E R YF +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK
Sbjct: 123 NCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKK 182
Query: 179 VEVKRALPKD 188
VEVK+A P+D
Sbjct: 183 VEVKKAEPRD 192
Score = 173 (66.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI + E LRDYF RFG V++VV++ D RPRGFGF+ F +DQ +
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM 173
Query: 67 K-HTIDGRPVEAKRALSREEQ 86
H I G+ VE K+A R+ +
Sbjct: 174 HFHDIMGKKVEVKKAEPRDSK 194
Score = 40 (19.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 284 FISAAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
F+ AAP +G+ P GY G+ +G + G+
Sbjct: 267 FLVAAPPT--GGFGA--PQGYPQQGFSTQPQFGYSFGT 300
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 257 (95.5 bits), Expect = 6.4e-43, Sum P(2) = 6.4e-43
Identities = 42/83 (50%), Positives = 64/83 (77%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
++GK+FIGG+ W+TT+ +LRDYF +FG+V +MRD TTGR RGFGF+ F +P +++V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 LQDKHTIDGRPVEAKRALSREEQ 86
+ +H +DG+ ++ KRA+ REEQ
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQ 243
Score = 224 (83.9 bits), Expect = 6.4e-43, Sum P(2) = 6.4e-43
Identities = 41/81 (50%), Positives = 57/81 (70%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
KT K+FVGG+P TE+ FR +F +G V D +M D++T RPRGFGF+T+E E AV+
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEAT 304
Query: 167 LQKVFHELNGKLVEVKRALPK 187
+ + + ++GK VEVKRA PK
Sbjct: 305 MSQPYITIHGKPVEVKRATPK 325
Score = 200 (75.5 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 41/122 (33%), Positives = 62/122 (50%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ D TE R++F +FG V +M DK TGRPRGFGFV + + S ++ +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 67 KH-TIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ TI G+PVE KRA + Y + ++ GG+ P + +
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNMNMY-GGMTPAMMAQYY 366
Query: 126 RQ 127
RQ
Sbjct: 367 RQ 368
Score = 198 (74.8 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+D R YFE +G V D VM D T R RGFGF+TF+ V+ V+ K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 170 VFHELNGKLVEVKRALPKD 188
H L+GK+++ KRA+P++
Sbjct: 224 E-HHLDGKIIDPKRAIPRE 241
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 234 (87.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 129
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 130 KVLDQKEHRLDGRVIDPKKAMAMKK 154
Score = 188 (71.2 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ ED V VL+
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKE 237
Score = 163 (62.4 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 135 KEHRLDGRVIDPKKAM 150
Score = 138 (53.6 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF +FG++ + + D + RGF F+ F + + +VL+
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 218
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 219 KFHTVSGSKCEIKVAQPKE 237
Score = 55 (24.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA-VSPLGH 328
G SW +Q Y GY GYG G SP G+
Sbjct: 261 GGQSQSW-NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 299
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 234 (87.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 188 (71.2 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ ED V VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
Score = 163 (62.4 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 138 (53.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF +FG++ + + D + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 220 KFHTVSGSKCEIKVAQPKE 238
Score = 55 (24.4 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA-VSPLGH 328
G SW +Q Y GY GYG G SP G+
Sbjct: 262 GGQSQSW-NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 300
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 414 (150.8 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 85/190 (44%), Positives = 121/190 (63%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME DE GKLF+GG++W+TT+ L YF RFGD+ V+M++ +GR RGFGFV F+DP+
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 60 LDQVLQD-KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
++ VLQ+ HT+DGR ++ K R Q Y K+F+GGLP
Sbjct: 61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGG-----------Y----KVFLGGLPS 105
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+TE R +F YG VT+VV+MYDQ ++ RGFGF++FE E +V++V + + LNGK
Sbjct: 106 NVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQ 165
Query: 179 VEVKRALPKD 188
VE+K+A P+D
Sbjct: 166 VEIKKAEPRD 175
Score = 51 (23.0 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 296 WGS---QNPSGYGTSGYDANAGYGANRGSAVSP 325
WG+ Q GYG SG + G+GA G P
Sbjct: 239 WGTSPQQQQYGYGNSGPGSYQGWGAPPGPQGPP 271
Score = 45 (20.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 289 PGALKSSWGSQ-NPSGYGTSGYDAN-AGYGANRGSA 322
PG S GS+ + GYG SGYD + + Y G++
Sbjct: 361 PGNSASKSGSEYDYGGYG-SGYDYDYSNYVKQEGAS 395
Score = 38 (18.4 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 303 GYGTSGYDANAGYGANRG 320
G+GTS GYG N G
Sbjct: 238 GWGTSPQQQQYGYG-NSG 254
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 222 (83.2 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 36/80 (45%), Positives = 61/80 (76%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++WDT++ L+DYFT+FG+V+ I D TGR RGFGF++F +P +++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H +DGR ++ K+A++ ++
Sbjct: 61 KEHRLDGRLIDPKKAMAMKK 80
Score = 195 (73.7 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FITF+ ED V VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
Score = 171 (65.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G VTD + D NT R RGFGFI F+ +V+ VL++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 170 VFHELNGKLVEVKRAL 185
H L+G+L++ K+A+
Sbjct: 61 KEHRLDGRLIDPKKAM 76
Score = 140 (54.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D T + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 67 K-HTIDGRPVEAKRALSRE 84
K H + G E K A +E
Sbjct: 145 KFHNVSGSKCEIKVAQPKE 163
Score = 58 (25.5 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 290 GALKSSW----GSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
GA +W G+ GYG GY GYG G S G+
Sbjct: 189 GAQSQNWNQGYGNYWNQGYGNQGYGYQQGYGGYGGYDYSGYGY 231
Score = 51 (23.0 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+G + SGYG GY GY ++GSA
Sbjct: 221 YGGYDYSGYGYYGY--GPGYDYSQGSA 245
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 244 (91.0 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
K+ KIFVGG+P E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD
Sbjct: 89 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 148
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ FH++ GK VEVKRA P+D
Sbjct: 149 VNMHFHDIMGKKVEVKRAEPRD 170
Score = 220 (82.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
VL + HT+DGR + R+
Sbjct: 66 TVLASRPHTLDGRNQKGPRS 85
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 88 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 147
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 148 AVNMHFHDIMGKKVEVKRAEPRDSK 172
Score = 157 (60.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL + T++ R YF YG V D V+M D+ T + RGFGF+ F+ + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 170 VFHELNGK 177
H L+G+
Sbjct: 71 RPHTLDGR 78
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 86/186 (46%), Positives = 122/186 (65%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D GK+FIGG++W TT LRDYF RFG+V++ ++MRD T R RGFGF+ F DPS +D+V
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
Query: 64 LQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L ++ H +DG+ ++ K A + Q KTKK+F+GGL T T
Sbjct: 103 LNNREHELDGKKIDPKVAFPKRTQAKLVT---------------KTKKVFIGGLSATSTL 147
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ +QYFE YG V D ++M+D+ TQR RGFGF+TF++++ D V + FHE+NGK+VE K
Sbjct: 148 EDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECK 207
Query: 183 RALPKD 188
+A PK+
Sbjct: 208 KAQPKE 213
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 244 (91.0 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
K+ KIFVGG+P E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD
Sbjct: 138 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 197
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ FH++ GK VEVKRA P+D
Sbjct: 198 VNMHFHDIMGKKVEVKRAEPRD 219
Score = 218 (81.8 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ + VL
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 67 K-HTIDGRPVEAKRALSREE 85
+ HT+DGR ++ K+ R +
Sbjct: 116 RPHTLDGRNIDPKQKGPRSD 135
Score = 177 (67.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 137 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 196
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 197 AVNMHFHDIMGKKVEVKRAEPRDSK 221
Score = 169 (64.5 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+FVGGL + T++ R YF YG V D V+M D+ T + RGFGF+ F+ + V VL
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 169 KVFHELNGKLVEVKRALPK 187
H L+G+ ++ K+ P+
Sbjct: 115 SRPHTLDGRNIDPKQKGPR 133
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 221 (82.9 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 39/83 (46%), Positives = 61/83 (73%)
Query: 5 EG-KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
EG K+F+GG++WDT++ L+DYF +FG+VS I D TGR RGFGF++F D +D+V
Sbjct: 62 EGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKV 121
Query: 64 LQDK-HTIDGRPVEAKRALSREE 85
L+ K H +DGR ++ K+A++ ++
Sbjct: 122 LEHKEHRLDGRLIDPKKAMAMKK 144
Score = 198 (74.8 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P ED R+YFE +G + + + D T + RGF FITF+ ED V +L+
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 208 KKFHNVSGSKCEIKIAQPKE 227
Score = 172 (65.6 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V+D + D NT R RGFGFI F+ ++VD VL+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 170 VFHELNGKLVEVKRAL 185
H L+G+L++ K+A+
Sbjct: 125 KEHRLDGRLIDPKKAM 140
Score = 133 (51.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + E +R+YF FG++ + + D T + RGF F+ F + + ++L+
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK 208
Query: 67 K-HTIDGRPVEAKRALSRE 84
K H + G E K A +E
Sbjct: 209 KFHNVSGSKCEIKIAQPKE 227
Score = 52 (23.4 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+G+ + SGYG GY GY ++GSA
Sbjct: 282 YGNYDYSGYGYYGY--GPGYDYSQGSA 306
Score = 48 (22.0 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 296 WGSQNPSGYGTSGYDANAGYG 316
+G+Q GYG GY GYG
Sbjct: 266 YGNQGYGGYGQQGY---GGYG 283
Score = 43 (20.2 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRG 320
+G Q GYG Y YG G
Sbjct: 274 YGQQGYGGYGNYDYSGYGYYGYGPG 298
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 231 (86.4 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 184 (69.8 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ E+ V VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 160 (61.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 139 (54.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
Score = 55 (24.4 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA-VSPLGH 328
G SW +Q Y GY GYG G SP G+
Sbjct: 257 GGQSQSW-NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 295
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSS--KSNKIFVGGIPHNC 123
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 124 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 183
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 184 VKRAEPRD 191
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 109 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 168
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQH 87
+ H I G+ VE KRA R+ ++
Sbjct: 169 AVNMHFHDIMGKKVEVKRAEPRDSKN 194
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS-KSNKIFVGGIPHNC 124
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 185 VKRAEPRD 192
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQH 87
+ H I G+ VE KRA R+ ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKN 195
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS-KSNKIFVGGIPHNC 124
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 185 VKRAEPRD 192
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQH 87
+ H I G+ VE KRA R+ ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKN 195
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 90/188 (47%), Positives = 124/188 (65%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
+D GK+FIGG++W T+ +LRDYF R+GD+S+ ++M+D TT R RGFGFV FSDP+ +D+
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Query: 63 VL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLP-PTL 120
VL Q H +DG+ V+ K A R H +TKKIFVGGL PT
Sbjct: 86 VLTQGTHELDGKKVDPKVAFPRRA-HPKMVT--------------RTKKIFVGGLSAPTT 130
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
ED + YFE +G + D ++M+D+ T R RGFGF+TF++ED VD V + FHE+N K+VE
Sbjct: 131 LED-VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVE 189
Query: 181 VKRALPKD 188
K+A PK+
Sbjct: 190 CKKAQPKE 197
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS-KSNKIFVGGIPHNC 124
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 185 VKRAEPRD 192
Score = 177 (67.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS-KSNKIFVGGIPHNC 124
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 185 VKRAEPRD 192
Score = 177 (67.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 90/188 (47%), Positives = 119/188 (63%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
VL + HT+DGR ++ K R Q K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS-KSNKIFVGGIPHNC 124
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VE
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 181 VKRALPKD 188
VKRA P+D
Sbjct: 185 VKRAEPRD 192
Score = 177 (67.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 88/187 (47%), Positives = 117/187 (62%)
Query: 4 DE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLT 121
VL + HT+DGR ++ K R Q ++ KIFVGG+P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCG 126
Query: 122 EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEV 181
E ++YF +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VEV
Sbjct: 127 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 186
Query: 182 KRALPKD 188
KRA P+D
Sbjct: 187 KRAEPRD 193
Score = 177 (67.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E L++YF RFG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 171 AVNMHFHDIMGKKVEVKRAEPRDSK 195
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 88/199 (44%), Positives = 127/199 (63%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M+ D KLF+GGIA +T+E L+ YF+R+G V + V+ ++K TG+PRGFGFV F++ +
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREE-----------QHXXXXXXXXXXXXXXXXXYFKTK 109
+ L+D H I G+PV+ ++A+ + E + +TK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
KIFVGGL TE+ F+ YFE +G TDVVVM+D T RPRGFGF+T+++ED+V+ V+Q
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 170 VFHELNGKLVEVKRALPKD 188
FHEL+ K VEVKRA+PK+
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 231 (86.4 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAMAMKK 149
Score = 176 (67.0 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 109 KKIFVGGL-PPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
KKIFVGGL P + TE+ R+YF +G + + + D + RGF FITF+ E+ V VL
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 168 QKVFHELNGKLVEVKRALPKD 188
+K FH ++G E+K A PK+
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
Score = 160 (61.4 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 130 KEHRLDGRVIDPKKAM 145
Score = 131 (51.2 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 7 KLFIGGIAWDT-TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
K+F+GG+ ++ TE +R+YF FG++ + + D + RGF F+ F + + +VL+
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 66 DK-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 55 (24.4 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA-VSPLGH 328
G SW +Q Y GY GYG G SP G+
Sbjct: 262 GGQSQSW-NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 300
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 243 (90.6 bits), Expect = 9.5e-41, Sum P(3) = 9.5e-41
Identities = 40/86 (46%), Positives = 66/86 (76%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYF++FG+V+ I D TGR RGFGF++F +PS +D
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 150
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQ 86
+VL Q +H +DGR ++ K+A++ +++
Sbjct: 151 KVLAQKEHRLDGRQIDPKKAMAMKKE 176
Score = 169 (64.5 bits), Expect = 9.5e-41, Sum P(3) = 9.5e-41
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + + RGF FITF+ E+AV +L+
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 169 KVFHELNGK--------LVEVKRALPKD 188
K +H ++G L E+K A PK+
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKE 266
Score = 167 (63.8 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G VTD + D NT R RGFGFI F+ VD VL +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 170 VFHELNGKLVEVKRAL 185
H L+G+ ++ K+A+
Sbjct: 156 KEHRLDGRQIDPKKAM 171
Score = 131 (51.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ +TTE +R+YF FG++ + + D + + RGF F+ F + + ++L+
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 67 K-HTIDG-RPVEAKRAL 81
K H + G + K L
Sbjct: 240 KYHNVSGTKDTSGKEGL 256
Score = 49 (22.3 bits), Expect = 9.5e-41, Sum P(3) = 9.5e-41
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 296 WGSQNPSGYG-TSGYDANAGYG 316
+G+Q GYG GY GYG
Sbjct: 305 YGNQGYGGYGGQQGYGGYGGYG 326
Score = 45 (20.9 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG GY GYG +G
Sbjct: 304 GYGNQGY---GGYGGQQG 318
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 237 (88.5 bits), Expect = 9.6e-41, Sum P(3) = 9.6e-41
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYF++FG+V I D TGR RGFGF++F + +D
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQ 86
+VLQ K H +DGR ++ KRA++ +++
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKE 126
Score = 184 (69.8 bits), Expect = 9.6e-41, Sum P(3) = 9.6e-41
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF ++G + + + D T + RGF FITF+ E AV +L+
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + G E+K A PK+
Sbjct: 189 KKYHNVCGSKCEIKIAQPKE 208
Score = 179 (68.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ D+VD VLQ+
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 170 VFHELNGKLVEVKRAL 185
H L+G+ ++ KRA+
Sbjct: 106 KEHRLDGRQIDPKRAM 121
Score = 140 (54.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ +TTE +R+YF FG++ + + D T + RGF F+ F + + ++L+
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 67 K-HTIDGRPVEAKRALSRE 84
K H + G E K A +E
Sbjct: 190 KYHNVCGSKCEIKIAQPKE 208
Score = 39 (18.8 bits), Expect = 9.6e-41, Sum P(3) = 9.6e-41
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 303 GYGTSGYDANAGYG 316
GYG G GYG
Sbjct: 252 GYGYGGQQGYGGYG 265
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 87/183 (47%), Positives = 115/183 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ + VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ HT+DGR ++ K R Q K+ KIFVGG+P E
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNN-KSNKIFVGGIPHNCGETEL 119
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VEVKRA
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 179
Query: 186 PKD 188
P+D
Sbjct: 180 PRD 182
Score = 174 (66.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 67 K-HTIDGRPVEAKRALSREEQ 86
H I G+ VE KRA R+ +
Sbjct: 164 HFHDIMGKKVEVKRAEPRDSK 184
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 87/189 (46%), Positives = 123/189 (65%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP-T 119
+VL Q H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANT 121
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+ ED +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+V
Sbjct: 122 VVED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
Query: 180 EVKRALPKD 188
E K+A PK+
Sbjct: 181 ECKKAQPKE 189
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 87/189 (46%), Positives = 123/189 (65%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP-T 119
+VL Q H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANT 121
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+ ED +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+V
Sbjct: 122 VVED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
Query: 180 EVKRALPKD 188
E K+A PK+
Sbjct: 181 ECKKAQPKE 189
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 87/183 (47%), Positives = 115/183 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ + VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ HT+DGR ++ K R Q K+ KIFVGG+P E
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS-KSNKIFVGGIPHNCGETEL 119
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VEVKRA
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 179
Query: 186 PKD 188
P+D
Sbjct: 180 PRD 182
Score = 177 (67.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 100 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 160 AVNMHFHDIMGKKVEVKRAEPRDSK 184
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 395 (144.1 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 79/183 (43%), Positives = 119/183 (65%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GK+F+GG+A +TT +F ++G+++ VIM+D+ TG+PRGFGFV ++D SV+D+V+Q
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
D H I G+ VE KR + R FKTKKIFVGG+P ++ +D F
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSND---------------FKTKKIFVGGIPSSVDDDEF 146
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKRA 184
+++F +G + + +M D +T R RGFGF+T+E+ED VD++L K EL+G VE+K+A
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKA 206
Query: 185 LPK 187
PK
Sbjct: 207 EPK 209
Score = 52 (23.4 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 290 GALKSSWGSQNPSGYGTSG--YDANAGYGANRGSAVSPLG 327
G +G + GYG G Y + GYG R G
Sbjct: 230 GGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGGYG 269
Score = 45 (20.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 297 GSQNPSG-YGTSGYDANA--GYGANRGSA 322
G PSG YG GY ++ GYG G A
Sbjct: 337 GYGGPSGSYG-GGYGSSGIGGYGGGMGGA 364
Score = 43 (20.2 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 290 GALKSS--WGSQNPSGYGTSGYDAN-AGYGANR-GSAVSP 325
G KS +G GYG GY GYG G V P
Sbjct: 249 GPYKSGGGYGGGRSGGYG--GYGGEFGGYGGGGYGGGVGP 286
Score = 37 (18.1 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 303 GYGTSGYD--ANAGYGANRG 320
GY GY GYG G
Sbjct: 305 GYNRGGYSMGGGGGYGGGPG 324
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 242 (90.2 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 41/86 (47%), Positives = 63/86 (73%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
+ + K+FIGG+ WDTTE LR+YF ++G V+ + IM+D TGR RGFGF+ F PS +
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQ 86
D+V++ +H +DG+ ++ KRA+ R+EQ
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQ 239
Score = 204 (76.9 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 40/79 (50%), Positives = 55/79 (69%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL TED R+YF YG VTD+ +M D T R RGFGF++FE +VD V+ K
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV-K 218
Query: 170 VFHELNGKLVEVKRALPKD 188
H L+GK+++ KRA+P+D
Sbjct: 219 TQHILDGKVIDPKRAIPRD 237
Score = 189 (71.6 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
KT KIFVGG+ P + F ++F +G + D +M D++T + RGFGF+T+++ DAVD V
Sbjct: 241 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 300
Query: 167 LQKVFHELNGKLVEVKRALPK 187
Q F + + +E+KRA P+
Sbjct: 301 CQNKFIDFKDRKIEIKRAEPR 321
Score = 156 (60.0 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 2 ESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
E D+ GK+F+GGI D ++F+++G + +M DK TG+ RGFGFV + +
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297
Query: 61 DQVLQDKHTID--GRPVEAKRALSREEQ 86
D+V Q+K ID R +E KRA R Q
Sbjct: 298 DRVCQNKF-IDFKDRKIEIKRAEPRHMQ 324
Score = 47 (21.6 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 297 GSQNPSGYGTSGYDANAGYGANR 319
G + PS Y D N+GYG NR
Sbjct: 470 GPKGPSQYND---DHNSGYGYNR 489
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 222 (83.2 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 36/80 (45%), Positives = 61/80 (76%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++WDT++ L+DYFT+FG+V+ I D TGR RGFGF++F +P +++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H +DGR ++ K+A++ ++
Sbjct: 61 KEHRLDGRLIDPKKAMAMKK 80
Score = 195 (73.7 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FITF+ ED V VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
Score = 171 (65.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G VTD + D NT R RGFGFI F+ +V+ VL++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 170 VFHELNGKLVEVKRAL 185
H L+G+L++ K+A+
Sbjct: 61 KEHRLDGRLIDPKKAM 76
Score = 140 (54.3 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D T + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 67 K-HTIDGRPVEAKRALSRE 84
K H + G E K A +E
Sbjct: 145 KFHNVSGSKCEIKVAQPKE 163
Score = 38 (18.4 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
G + S+G + G G AN G RG
Sbjct: 173 GGGRGSYGGRGRGGRGGGQGSANYGKTPRRG 203
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 248 (92.4 bits), Expect = 6.6e-40, Sum P(2) = 6.6e-40
Identities = 39/83 (46%), Positives = 64/83 (77%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
++GK+FIGG+ W+TT+ +L++YF++FG+V + +MRD TGR RGFGF+ F DP ++ V
Sbjct: 108 EDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Query: 64 LQDKHTIDGRPVEAKRALSREEQ 86
+ +H +DG+ ++ KRA+ R+EQ
Sbjct: 168 MVKEHYLDGKIIDPKRAIPRDEQ 190
Score = 209 (78.6 bits), Expect = 6.6e-40, Sum P(2) = 6.6e-40
Identities = 40/81 (49%), Positives = 56/81 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
KT KIFVGG+ TE F+Q+F +G V D +M D++T RPRGFGF+TF++E AV+
Sbjct: 192 KTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 251
Query: 167 LQKVFHELNGKLVEVKRALPK 187
L + E+ GK +EVK+A P+
Sbjct: 252 LSRPL-EILGKTIEVKKAQPR 271
Score = 179 (68.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ ++YF +G V + VM D T R RGFGF+TF+ V+ V+ K
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 170 VFHELNGKLVEVKRALPKD 188
H L+GK+++ KRA+P+D
Sbjct: 171 E-HYLDGKIIDPKRAIPRD 188
Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ + TE + +F +FG V +M DK TGRPRGFGFV F + ++ L
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 67 KHTIDGRPVEAKRALSR 83
I G+ +E K+A R
Sbjct: 255 PLEILGKTIEVKKAQPR 271
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 86/189 (45%), Positives = 122/189 (64%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+D + +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP-T 119
+VL Q H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANT 121
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+ ED +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+V
Sbjct: 122 VVED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
Query: 180 EVKRALPKD 188
E K+A PK+
Sbjct: 181 ECKKAQPKE 189
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 83/188 (44%), Positives = 119/188 (63%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF +FG++ + ++MRD TT R RGFGF+ F+D S +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
+VL Q H +D + ++ K A R Q +TKKIFVGGL +
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSAST 121
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+ +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+VE
Sbjct: 122 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVE 181
Query: 181 VKRALPKD 188
K+A PK+
Sbjct: 182 CKKAQPKE 189
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 84/183 (45%), Positives = 119/183 (65%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-QD 66
+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D+VL Q
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP-TLTEDGF 125
H +D + ++ K A R Q +TKKIFVGGL T+ ED
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANTVVED-V 104
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+VE K+A
Sbjct: 105 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 164
Query: 186 PKD 188
PK+
Sbjct: 165 PKE 167
Score = 164 (62.8 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +T ++ YF +FG V ++M DKTT R RGFGFV F + V+++V +
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 149 HFHEINNKMVECKKAQPKE 167
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 227 (85.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E DEGK+FIGG++WDTT+ L+DYF++FGDV + D TGR RGFGFV+F + +D
Sbjct: 72 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 132 KVMDQKEHKLNGKVIDPKRA 151
Score = 169 (64.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 221 KKYHNVGLSKCEIKVAMSKE 240
Score = 168 (64.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 137 KEHKLNGKVIDPKRA 151
Score = 144 (55.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 222 KYHNVGLSKCEIKVAMSKEQ 241
Score = 43 (20.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY++ GYG
Sbjct: 286 YNSQGYGGYGGYDYTGYNSYYGYG 309
Score = 37 (18.1 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 285 GYNSQGYGGYGGY 297
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 388 (141.6 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 78/183 (42%), Positives = 114/183 (62%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GK+FIGG+ DTT +F ++G+++ VIMRD+ TG+PRGFGF+ F+DPSV+D+V++
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
D H I+G+ VE KR + + KTKKIFVGG+P T+TED
Sbjct: 79 DTHVINGKQVEIKRTIPK-------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV-FHELNGKLVEVKRA 184
+ +F YG+V + V+ D T R RGFGF+ F++E+ VD +L K ++ VE+K+A
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
Query: 185 LPK 187
PK
Sbjct: 186 EPK 188
Score = 40 (19.1 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 297 GSQNPSGYGTSGYDA---NAGYGANRGSAVSPLG 327
G + GYG GY + G G + A P G
Sbjct: 311 GGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYG 344
Score = 40 (19.1 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
S+GS +P G S D+ A YG G GH
Sbjct: 197 SYGS-HPRG--RSSNDSYASYGGPYGGFDGGYGH 227
Score = 40 (19.1 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
G S +G + GYG G A GY G G
Sbjct: 285 GPYGSGFGGE---GYGRGGEGAYLGYPRGGGEGYGGYG 319
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 83/186 (44%), Positives = 117/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ +QYFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 215 (80.7 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 36/80 (45%), Positives = 59/80 (73%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + +++VL
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H +DGR ++ K+A++ ++
Sbjct: 61 KEHRLDGRVIDPKKAMAMKK 80
Score = 164 (62.8 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + + RGF FITF+ E+ V VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 169 KVFHELNG 176
K FH ++G
Sbjct: 144 KKFHTISG 151
Score = 160 (61.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 61 KEHRLDGRVIDPKKAM 76
Score = 131 (51.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D + + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Query: 67 K-HTIDG 72
K HTI G
Sbjct: 145 KFHTISG 151
Score = 56 (24.8 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA-VSPLGH 328
G+ SW +Q Y GY GYG G SP G+
Sbjct: 194 GSQSQSW-NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGY 232
Score = 40 (19.1 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 293 KSSWGSQNPSGYGTSGYDANAGYG 316
K + GS G G+ N GYG
Sbjct: 182 KGNRGSGGGGGSGSQSQSWNQGYG 205
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 234 (87.4 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 190 (71.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 44/120 (36%), Positives = 60/120 (50%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ ED V VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 169 KVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAG 228
K FH ++G E+K A PK+ N S G+ N Y ++Q G
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTN-YGKSQRRGG 277
Score = 163 (62.4 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 138 (53.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF +FG++ + + D + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 220 KFHTVSGSKCEIKVAQPKE 238
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 234 (87.4 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 143
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 144 KVLDQKEHRLDGRVIDPKKAMAMKK 168
Score = 190 (71.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 44/120 (36%), Positives = 60/120 (50%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ ED V VL+
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 169 KVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAG 228
K FH ++G E+K A PK+ N S G+ N Y ++Q G
Sbjct: 232 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTN-YGKSQRRGG 290
Score = 163 (62.4 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 149 KEHRLDGRVIDPKKAM 164
Score = 138 (53.6 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF +FG++ + + D + RGF F+ F + + +VL+
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 232
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 233 KFHTVSGSKCEIKVAQPKE 251
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 234 (87.4 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 190 (71.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 44/120 (36%), Positives = 60/120 (50%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ ED V VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 169 KVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAG 228
K FH ++G E+K A PK+ N S G+ N Y ++Q G
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTN-YGKSQRRGG 277
Score = 163 (62.4 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 136 KEHRLDGRVIDPKKAM 151
Score = 138 (53.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF +FG++ + + D + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 220 KFHTVSGSKCEIKVAQPKE 238
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 82/183 (44%), Positives = 116/183 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-Q 65
K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+VL Q
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+H +D + ++ K A R Q +TKKIFVGGL T +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTVEDV 105
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+QYFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K+A
Sbjct: 106 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 165
Query: 186 PKD 188
PK+
Sbjct: 166 PKE 168
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 219 (82.2 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 37/80 (46%), Positives = 59/80 (73%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E DEGK+F+GG++WDTT+ L+DYFT+FG+V + D TGR RGFGFV+F + ++
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 62 QVL-QDKHTIDGRPVEAKRA 80
+V+ Q +H ++G+ ++ K+A
Sbjct: 110 KVITQKEHKLNGKVIDPKKA 129
Score = 173 (66.0 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF+ YG V + + + T + RGF FITF+ E+ V +++
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + EVK A+ K+
Sbjct: 199 KKYHNIGLSKCEVKVAMSKE 218
Score = 160 (61.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL T+ + YF +G V D + D T R RGFGF+ F+ ++V+ V+ +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ K+A
Sbjct: 115 KEHKLNGKVIDPKKA 129
Score = 141 (54.7 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF +G+V + + + T + RGF F+ F + + ++++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I E K A+S+E+
Sbjct: 200 KYHNIGLSKCEVKVAMSKEQ 219
Score = 41 (19.5 bits), Expect = 6.2e-38, Sum P(3) = 6.2e-38
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 303 GYGTSGYDANAGYG 316
GY SGY+ GYG
Sbjct: 276 GYDYSGYNNYYGYG 289
Score = 40 (19.1 bits), Expect = 7.8e-38, Sum P(3) = 7.8e-38
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 296 WGSQNPSGYGTSGYDANAGY 315
+G+ GY GY GY
Sbjct: 258 YGNYGNYGYNNQGYGGYGGY 277
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 82/186 (44%), Positives = 116/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ L+DYF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQTRHELDSKTIDPKVAFPRRAQPKLVT---------------RTKKIFVGGLSVNTTI 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ +QYF+ +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 223 (83.6 bits), Expect = 7.8e-38, Sum P(3) = 7.8e-38
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E DEGK+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 101 KVMDQKEHKLNGKVIDPKRA 120
Score = 169 (64.5 bits), Expect = 7.8e-38, Sum P(3) = 7.8e-38
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 190 KKYHNVGLSKCEIKVAMSKE 209
Score = 169 (64.5 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 106 KEHKLNGKVIDPKRA 120
Score = 144 (55.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 191 KYHNVGLSKCEIKVAMSKEQ 210
Score = 40 (19.1 bits), Expect = 7.8e-38, Sum P(3) = 7.8e-38
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 255 YNSQGYGGYGGYDYTGYNNYYGYG 278
Score = 37 (18.1 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 254 GYNSQGYGGYGGY 266
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/186 (44%), Positives = 116/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/186 (44%), Positives = 116/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/186 (44%), Positives = 116/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 231 (86.4 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 187 (70.9 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + + RGF FITF+ E+ V VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 214 KKFHTISGSKCEIKVAQPKE 233
Score = 161 (61.7 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D + + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HTI G E K A +E
Sbjct: 215 KFHTISGSKCEIKVAQPKE 233
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 216 (81.1 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 85 KVLELKEHKLDGKLIDPKRA 104
Score = 160 (61.4 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 174 SRYHQIGSGKCEIKVAQPKE 193
Score = 153 (58.9 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 90 KEHKLDGKLIDPKRA 104
Score = 131 (51.2 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 175 RYHQIGSGKCEIKVAQPKE 193
Score = 52 (23.4 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGS-QNPSGYGT---SGYD-ANAGYG 316
G S++G QN SGYG +GY+ N GYG
Sbjct: 240 GNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYG 271
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/186 (44%), Positives = 116/186 (62%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ +QYFE + V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKD 188
+A PK+
Sbjct: 183 KAQPKE 188
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 231 (86.4 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 186 (70.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 43/120 (35%), Positives = 60/120 (50%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ E+ V VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 169 KVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAG 228
K FH ++G E+K A PK+ N S G+ N Y ++Q G
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTN-YGKSQRRGG 272
Score = 160 (61.4 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 139 (54.0 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 231 (86.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 184 (69.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D + RGF FITF+ E+ V VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 160 (61.4 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 131 KEHRLDGRVIDPKKAM 146
Score = 139 (54.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HT+ G E K A +E
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 212 (79.7 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + ++
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 86 KVLELKEHKLDGKLIDPKRA 105
Score = 160 (61.4 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 175 SRYHQIGSGKCEIKVAQPKE 194
Score = 149 (57.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +V+ VL+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 91 KEHKLDGKLIDPKRA 105
Score = 131 (51.2 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 176 RYHQIGSGKCEIKVAQPKE 194
Score = 52 (23.4 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 290 GALKSSWGSQNPSGYGT---SGYD-ANAGYG 316
G S++ Q+ SGYG SGY+ N GYG
Sbjct: 241 GNYNSAYSDQSYSGYGGYDYSGYNYPNYGYG 271
Score = 39 (18.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 294 SSWGSQNPSGYGTSGYDANAGY 315
S +G + SGY Y GY
Sbjct: 253 SGYGGYDYSGYNYPNYGYGPGY 274
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 229 (85.7 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K FIGG++WDTTE L +F ++G++ IM+D TGR RGFGF+ F D +D +L+D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 67 KHTIDGRPVEAKRALSREEQ 86
+H +DG+ ++ KRA+S+E+Q
Sbjct: 223 RHVLDGKLIDPKRAISKEDQ 242
Score = 196 (74.1 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
K KIFVGG+ P +TE+ F +F +G + D +M D++T R RGFGF+T+++ AVD V
Sbjct: 244 KVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKV 303
Query: 167 LQKVFHELNGKLVEVKRALPK 187
+ L GK +EVKRA P+
Sbjct: 304 CVNKYLTLKGKAMEVKRAAPR 324
Score = 182 (69.1 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
++K F+GGL TE+ +F+ YG++ D +M D T R RGFGF+TFE +VD +L
Sbjct: 161 SRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALL 220
Query: 168 QKVFHELNGKLVEVKRALPKD 188
K H L+GKL++ KRA+ K+
Sbjct: 221 -KDRHVLDGKLIDPKRAISKE 240
Score = 174 (66.3 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GK+F+GGI TE ++F++FG + +M DK TGR RGFGFV + P+ +D+V
Sbjct: 246 GKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCV 305
Query: 66 DKH-TIDGRPVEAKRALSREEQH 87
+K+ T+ G+ +E KRA R QH
Sbjct: 306 NKYLTLKGKAMEVKRAAPRG-QH 327
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 219 (82.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I TGR +GFGF++F D + ++
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL K H +DGR ++ K+A++ ++
Sbjct: 120 KVLDQKEHRLDGRVIDPKKAMAMKK 144
Score = 191 (72.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FITF+ E+ V VL+
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 169 KVFHELNGKLVEVKRALPKD 188
K FH ++G E+K A PK+
Sbjct: 208 KKFHTISGSKCEIKVAQPKE 227
Score = 148 (57.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL ++ + YF +G V D + NT R +GFGFI F+ +V+ VL +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 170 VFHELNGKLVEVKRAL 185
H L+G++++ K+A+
Sbjct: 125 KEHRLDGRVIDPKKAM 140
Score = 146 (56.5 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ + TE +R+YF FG++ + + D T + RGF F+ F + + +VL+
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
Query: 67 K-HTIDGRPVEAKRALSRE 84
K HTI G E K A +E
Sbjct: 209 KFHTISGSKCEIKVAQPKE 227
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 212 (79.7 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + ++
Sbjct: 62 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 121
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 122 KVLELKEHKLDGKLIDPKRA 141
Score = 160 (61.4 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 211 SRYHQIGSGKCEIKVAQPKE 230
Score = 149 (57.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +V+ VL+
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 127 KEHKLDGKLIDPKRA 141
Score = 131 (51.2 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 212 RYHQIGSGKCEIKVAQPKE 230
Score = 52 (23.4 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 290 GALKSSWGSQNPSGYGT---SGYD-ANAGYG 316
G S++ Q+ SGYG SGY+ N GYG
Sbjct: 277 GNYNSAYSDQSYSGYGGYDYSGYNYPNYGYG 307
Score = 39 (18.8 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 294 SSWGSQNPSGYGTSGYDANAGY 315
S +G + SGY Y GY
Sbjct: 289 SGYGGYDYSGYNYPNYGYGPGY 310
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 211 (79.3 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FGDV + D TGR RGFGFV+F + +D
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA 170
Score = 169 (64.5 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 168 (64.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 144 (55.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQ 260
Score = 43 (20.2 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY++ GYG
Sbjct: 305 YNSQGYGGYGGYDYTGYNSYYGYG 328
Score = 37 (18.1 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 304 GYNSQGYGGYGGY 316
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 211 (79.3 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FGDV + D TGR RGFGFV+F + +D
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA 170
Score = 169 (64.5 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 168 (64.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 144 (55.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQ 260
Score = 43 (20.2 bits), Expect = 5.1e-36, Sum P(3) = 5.1e-36
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY++ GYG
Sbjct: 305 YNSQGYGGYGGYDYTGYNSYYGYG 328
Score = 37 (18.1 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 304 GYNSQGYGGYGGY 316
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 207 (77.9 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 26 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 85
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 86 KVMDQKEHKLNGKVIDPKRA 105
Score = 169 (64.5 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 175 KKYHNVGLSKCEIKVAMSKE 194
Score = 169 (64.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 91 KEHKLNGKVIDPKRA 105
Score = 144 (55.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 176 KYHNVGLSKCEIKVAMSKEQ 195
Score = 37 (18.1 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 239 GYNSQGYGGYGGY 251
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 350 (128.3 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ + TT+ L+ +F ++G++ VV+M+D T R RGFGF+ +S S++D+ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H IDGR VE KRA+ R++ KK+FVG L E
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGAT-------------VKKLFVGALKDDHDEQSI 138
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YF+++G++ D+ ++ D+ T + RGF F+ F+ D VD V+ + H+LNGK+V+VK+AL
Sbjct: 139 RDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL 198
Query: 186 PK 187
PK
Sbjct: 199 PK 200
Score = 190 (71.9 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ + +FE +G++ DVVVM D T+R RGFGFIT+ +D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 169 KVFHELNGKLVEVKRALPK 187
H+++G++VE KRA+P+
Sbjct: 91 SRPHKIDGRVVEPKRAVPR 109
Score = 175 (66.7 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
KLF+G + D E ++RDYF FG++ + I+ DK TG+ RGF FV F D +D+V LQ
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Query: 66 DKHTIDGRPVEAKRALSRE 84
+H ++G+ V+ K+AL ++
Sbjct: 183 KQHQLNGKMVDVKKALPKQ 201
Score = 52 (23.4 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGAN 318
G +SWG+ NP G G N G G N
Sbjct: 272 GGGNNSWGNNNPWDNGNGG--GNFGGGGN 298
Score = 40 (19.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 300 NPSGYGTSGYDANAGYGANRG 320
N G GY N G G RG
Sbjct: 301 NNGGNDFGGYQQNYGGGPQRG 321
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 216 (81.1 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 204 KVLELKEHKLDGKLIDPKRA 223
Score = 160 (61.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 153 (58.9 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 131 (51.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
Score = 52 (23.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGS-QNPSGYGT---SGYD-ANAGYG 316
G S++G QN SGYG +GY+ N GYG
Sbjct: 359 GNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYG 390
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 216 (81.1 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 204 KVLELKEHKLDGKLIDPKRA 223
Score = 160 (61.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 153 (58.9 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 131 (51.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
Score = 52 (23.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGS-QNPSGYGT---SGYD-ANAGYG 316
G S++G QN SGYG +GY+ N GYG
Sbjct: 359 GNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYG 390
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 216 (81.1 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H +DG+ ++ KRA
Sbjct: 204 KVLELKEHKLDGKLIDPKRA 223
Score = 160 (61.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 153 (58.9 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 131 (51.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
Score = 52 (23.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGS-QNPSGYGT---SGYD-ANAGYG 316
G S++G QN SGYG +GY+ N GYG
Sbjct: 359 GNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYG 390
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 355 (130.0 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 71/184 (38%), Positives = 116/184 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ +TT+ +R+++++FG+++ +++MRD TT R RGFGFV FS + +D ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H IDG+ V+ KRA+ R++++ TK+++V G+ TED
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVS-------------TKRLYVSGVREDHTEDML 130
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDN-VLQKVFHELNGKLVEVKRA 184
+YF YG VT ++ D+ TQ+PRGFGF+TF+ D+VD VLQK H +NG +V++
Sbjct: 131 TEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKS-HMVNGHRCDVRKG 189
Query: 185 LPKD 188
L KD
Sbjct: 190 LSKD 193
Score = 204 (76.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+KIFVGGL T+D R+++ +G +TD++VM D T+R RGFGF+TF + VD ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 169 KVFHELNGKLVEVKRALPKD 188
+ H ++GK V+ KRA+P+D
Sbjct: 83 QRPHIIDGKTVDPKRAVPRD 102
Score = 183 (69.5 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
+L++ G+ D TE L +YFT++G V++ I+ DK T +PRGFGFV F D +DQ VLQ
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 66 DKHTIDGRPVEAKRALSREE 85
H ++G + ++ LS++E
Sbjct: 175 KSHMVNGHRCDVRKGLSKDE 194
Score = 44 (20.5 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 296 WGSQ----NPSGYGTSGYDANAGYGANRG 320
WG P YG G GYG + G
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGDYG 257
Score = 38 (18.4 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 301 PSGYGTSGY--DANAGYGANRG 320
P G G GY D G+G G
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQGG 265
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 348 (127.6 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 51 (23.0 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 289 PG-ALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
PG + + +G P GYG G GYG G
Sbjct: 281 PGYSSRGGYGGGGPGGYGNQG----GGYGGGGG 309
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 357 SSGSPYGGGYGSGG--GSGGYGSRR 379
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 255 GSRGSYGGGDGGYNGFGGDGGNYG 278
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 339 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 372
Score = 42 (19.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 289 PGALKSSWGSQNPSGYGTSGYDANAGYGA-NRG 320
PG + G G G GY+ +G N G
Sbjct: 294 PGGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYG 326
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 248 GYGGGGGGSRGSYGGGDG 265
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 268 NGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 353 (129.3 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 73/182 (40%), Positives = 109/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 94 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 140
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 141 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 200
Query: 186 PK 187
K
Sbjct: 201 SK 202
Score = 196 (74.1 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LR+YF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 185 KYHTINGHNCEVKKALSKQE 204
Score = 188 (71.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 93 ARPHKVDGRVVEPKRAVSRE 112
Score = 44 (20.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 290 GALKSSWGSQNPSG-YG--TSGYDANAGYGANRGS 321
G +S++G G +G +SG GYG+ GS
Sbjct: 338 GQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGS 372
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 305 GTSGYDANAGYGANRGS 321
G GY G G +RGS
Sbjct: 242 GRGGYGGGGGGGGSRGS 258
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG SG + GYG R
Sbjct: 357 SSGSPYGGGYG-SG-SGSGGYGGRR 379
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 294 SSWGSQNPSGYGTS-GYDANAGYGANRG 320
+ +G YG GY + GYG G
Sbjct: 266 NGFGDVKGGNYGGGPGYGSRGGYGGGGG 293
Score = 39 (18.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 289 PG-ALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
PG + +G GYG G GYG G
Sbjct: 280 PGYGSRGGYGGGGGPGYGNPG----GGYGGGGG 308
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 353 (129.3 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 73/182 (40%), Positives = 109/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 82 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 129 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 188
Query: 186 PK 187
K
Sbjct: 189 SK 190
Score = 196 (74.1 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LR+YF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 113 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 172
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 173 KYHTINGHNCEVKKALSKQE 192
Score = 188 (71.2 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 81 ARPHKVDGRVVEPKRAVSRE 100
Score = 44 (20.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 290 GALKSSWGSQNPSG-YG--TSGYDANAGYGANRGS 321
G +S++G G +G +SG GYG+ GS
Sbjct: 268 GQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGS 302
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG SG + GYG R
Sbjct: 287 SSGSPYGGGYG-SG-SGSGGYGGRR 309
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 200 (75.5 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HTIDGRPVEAKRA 80
K H +DG+ ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 160 (61.4 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
Score = 153 (58.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 131 (51.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 197 RYHQIGSGKCEIKVAQPKE 215
Score = 52 (23.4 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
G S++G ++ SGYG GYD GY N GS
Sbjct: 262 GNYNSAYGDESYSGYG--GYDYT-GY--NYGS 288
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 294 SSWGSQNPSGYGTSGYDANAGY 315
S +G + +GY Y GY
Sbjct: 274 SGYGGYDYTGYNYGSYGYGQGY 295
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 200 (75.5 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HTIDGRPVEAKRA 80
K H +DG+ ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 160 (61.4 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
Score = 153 (58.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ +Y +G V D + D T R RGFGF+ F+ +VD VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 131 (51.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 197 RYHQIGSGKCEIKVAQPKE 215
Score = 52 (23.4 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
G S++G ++ SGYG GYD GY N GS
Sbjct: 262 GNYNSAYGDESYSGYG--GYDYT-GY--NYGS 288
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 294 SSWGSQNPSGYGTSGYDANAGY 315
S +G + +GY Y GY
Sbjct: 274 SGYGGYDYTGYNYGSYGYGQGY 295
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 207 (77.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 169 (64.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 144 (55.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQ 262
Score = 40 (19.1 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 307 YNSQGYGGYGGYDYTGYNNYYGYG 330
Score = 37 (18.1 bits), Expect = 7.7e-35, Sum P(3) = 7.7e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 306 GYNSQGYGGYGGY 318
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 207 (77.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 169 (64.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 144 (55.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQ 262
Score = 40 (19.1 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 307 YNSQGYGGYGGYDYTGYNNYYGYG 330
Score = 37 (18.1 bits), Expect = 7.7e-35, Sum P(3) = 7.7e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 306 GYNSQGYGGYGGY 318
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 207 (77.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 169 (64.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 144 (55.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQ 262
Score = 40 (19.1 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 307 YNSQGYGGYGGYDYTGYNNYYGYG 330
Score = 37 (18.1 bits), Expect = 7.7e-35, Sum P(3) = 7.7e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 306 GYNSQGYGGYGGY 318
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 207 (77.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 169 (64.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 144 (55.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQ 262
Score = 40 (19.1 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 307 YNSQGYGGYGGYDYTGYNNYYGYG 330
Score = 37 (18.1 bits), Expect = 7.7e-35, Sum P(3) = 7.7e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 306 GYNSQGYGGYGGY 318
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 355 (130.0 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 72/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ HTIDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 78 RPHTIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 124
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 125 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 184
Query: 186 PK 187
+
Sbjct: 185 SR 186
Score = 203 (76.5 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 169 KYHTINGHNAEVRKALSRQE 188
Score = 181 (68.8 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 77 ARPHTIDGRVVEPKRAVARE 96
Score = 41 (19.5 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 318 GGSRNMGGPYGGGNYGPGGSGGSGGYG 344
Score = 39 (18.8 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 246 GPGGGNFGGSPGYGGGRG 263
Score = 38 (18.4 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 230 YGSGRGFGDGYNGYGGGPG-GGNFGGS 255
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 353 (129.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 109/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 70 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 117 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 176
Query: 186 PK 187
K
Sbjct: 177 SK 178
Score = 196 (74.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LR+YF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 160
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 161 KYHTINGHNCEVKKALSKQE 180
Score = 188 (71.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 69 ARPHKVDGRVVEPKRAVSRE 88
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 305 GTSGYDANAGYGANRGS 321
G GY G G +RGS
Sbjct: 217 GRGGYGGGGGGGGSRGS 233
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 355 SSGSPYGGGYGSGG--GSGGYGSRR 377
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 254 GSRGSYGGGDGGYNGFGGDGGNYG 277
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 337 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 370
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 247 GYGGGGGGSRGSYGGGDG 264
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 267 NGFGGDGGNYGGGPGYSSRGGYG 289
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 355 SSGSPYGGGYGSGG--GSGGYGSRR 377
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 255 GSRGSYGGGDGGYNGFGGDGGNYG 278
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 337 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 370
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 248 GYGGGGGGSRGSYGGGDG 265
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 268 NGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 356 SSGSPYGGGYGSGG--GSGGYGSRR 378
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 255 GSRGSYGGGDGGYNGFGGDGGNYG 278
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 338 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 248 GYGGGGGGSRGSYGGGDG 265
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 268 NGFGGDGGNYGGGPGYSSRGGYG 290
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 356 SSGSPYGGGYGSGG--GSGGYGSRR 378
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 255 GSRGSYGGGDGGYNGFGGDGGNYG 278
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 338 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 248 GYGGGGGGSRGSYGGGDG 265
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 268 NGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 180
Query: 186 PK 187
K
Sbjct: 181 SK 182
Score = 200 (75.5 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 165 KYHTINGHNCEVKKALSKQE 184
Score = 185 (70.2 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 334 SSGSPYGGGYGSGG--GSGGYGSRR 356
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 316 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 349
Score = 43 (20.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G ++ G G GY+ G G N G
Sbjct: 233 GXRSSYGGGDGGYNGFGGDGGNYG 256
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 180
Query: 186 PK 187
K
Sbjct: 181 SK 182
Score = 200 (75.5 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 165 KYHTINGHNCEVKKALSKQE 184
Score = 185 (70.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 299 SSGSPYGGGYGSGG--GSGGYGSRR 321
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 281 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 314
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 348 (127.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 73/182 (40%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 200 (75.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 185 (70.2 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG+ R
Sbjct: 297 SSGSPYGGGYGSGG--GSGGYGSRR 319
Score = 46 (21.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 279 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 312
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 346 (126.9 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 72/182 (39%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR +F ++G ++ V+MRD R RGFGFV +S S +D +
Sbjct: 14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + + KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSNKPGA-------------HLTVKKIFVGGIKEDTEEYHI 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + +M +++T + RGF F+TF+ D VD ++ + +H +N EV++AL
Sbjct: 121 REYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKAL 180
Query: 186 PK 187
PK
Sbjct: 181 PK 182
Score = 181 (68.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TED R +FE +G +TD VVM D +R RGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
Score = 173 (66.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E +R+YF +G + + IM +++TG+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+ E ++AL ++E
Sbjct: 165 KYHTINSHNCEVRKALPKQE 184
Score = 49 (22.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 297 GSQNPSGYGTSGYDANAGYGANR 319
G GYG+ G GYG+ R
Sbjct: 289 GPYGGGGYGSGGGGGGGGYGSRR 311
Score = 49 (22.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 290 GALK-SSWGSQNPSGYGTSGYDANAGYG 316
G +K +++G +N YG GY + G G
Sbjct: 276 GPMKGNNFGGRNSGPYGGGGYGSGGGGG 303
Score = 41 (19.5 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 293 KSSWGSQNPSGYGTSGYDAN-----AGYGANRG 320
+ +G G G +G+ N GYG RG
Sbjct: 210 RGGYGGGRGGGDGYNGFGGNYGGGPGGYGGGRG 242
Score = 40 (19.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 297 GSQNPSGYG--TSGYDANAGYGANRGSAVSPLG 327
G+ GYG G D G+G N G G
Sbjct: 206 GNFGRGGYGGGRGGGDGYNGFGGNYGGGPGGYG 238
Score = 37 (18.1 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G N +G G G GYG RG
Sbjct: 197 GGGNFTGRG--GNFGRGGYGGGRG 218
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 344 (126.2 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 70/183 (38%), Positives = 112/183 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KK+FVGG+ E+
Sbjct: 99 RPHKVDGRAVEPKRAVSREDS-------------SKPGAHSTVKKMFVGGIKEDTDEEHL 145
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF +G + +V +M ++N+ + RGF FITF+ DAVD ++ + +H +NG EV++AL
Sbjct: 146 REYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKAL 205
Query: 186 PKD 188
++
Sbjct: 206 SRE 208
Score = 194 (73.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LR+YF +FG + +V IM +K + + RGF F+ F D +D+ V+Q
Sbjct: 130 KMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Query: 66 DKHTIDGRPVEAKRALSREEQH 87
HT++G E ++ALSREE +
Sbjct: 190 KYHTVNGHNCEVRKALSREEMN 211
Score = 184 (69.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ + VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G+ VE KRA+ ++
Sbjct: 98 ARPHKVDGRAVEPKRAVSRE 117
Score = 51 (23.0 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 294 SSWGSQNPSGYGTSG--YDANAGYGANRG 320
+ +G N GYG G Y N GYG+ G
Sbjct: 267 NGYGGGN-GGYGGGGPNYGGNRGYGSGGG 294
Score = 48 (22.0 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 286 SAAPGALKSSWGSQNPSGYGTSGYDA---NAGYGANRGS 321
S G +G+Q GYG GYD N G G G+
Sbjct: 291 SGGGGGGGGGYGNQG-GGYGGGGYDNYNNNGGGGGGGGN 328
Score = 43 (20.2 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS GYG GYG G
Sbjct: 384 GSGGGGGYGGGSGGGGGGYGGGSG 407
Score = 40 (19.1 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
G G GYG G D GYG G
Sbjct: 246 GGYGGGGGRGGGGGYG--GGDGYNGYGGGNG 274
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G GY G G RG
Sbjct: 238 GGGGGGYGGGYGGGGGRG 255
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 303 GYGTSGYDANAG-YGANRGSAVSPLGH 328
GYG+ G G YG N+G G+
Sbjct: 288 GYGSGGGGGGGGGYG-NQGGGYGGGGY 313
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 201 (75.8 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D+V+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 67 K-HTIDGRPVEAKRA 80
K H ++G+ ++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 169 (64.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 167 (63.8 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 145 KKYHNVGLSKCEIKVAMSKE 164
Score = 145 (56.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 146 KYHNVGLSKCEIKVAMSKEQ 165
Score = 37 (18.1 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 209 GYNSQGYGGYGGY 221
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 117 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 176
Query: 186 PK 187
+
Sbjct: 177 SR 178
Score = 203 (76.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 182 (69.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 69 ARPHSIDGRVVEPKRAVARE 88
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 310 GGSRNMGGPYGGGNYGPGGSGGSGGYG 336
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 238 GPGGGNFGGSPGYGGGRG 255
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 222 YGSGRGFGDGYNGYGGGPG-GGNFGGS 247
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 203 (76.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 250 GPGGGNFGGSPGYGGGRG 267
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 234 YGSGRGFGDGYNGYGGGPG-GGNFGGS 259
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 203 (76.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 250 GPGGGNFGGSPGYGGGRG 267
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 234 YGSGRGFGDGYNGYGGGPG-GGNFGGS 259
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 203 (76.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 250 GPGGGNFGGSPGYGGGRG 267
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 234 YGSGRGFGDGYNGYGGGPG-GGNFGGS 259
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 81 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 127
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 128 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 187
Query: 186 PK 187
+
Sbjct: 188 SR 189
Score = 203 (76.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 172 KYHTINGHNAEVRKALSRQE 191
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 80 ARPHSIDGRVVEPKRAVARE 99
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 321 GGSRNMGGPYGGGNYGPGGSGGSGGYG 347
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 249 GPGGGNFGGSPGYGGGRG 266
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 233 YGSGRGFGDGYNGYGGGPG-GGNFGGS 258
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 81 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 127
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 128 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 187
Query: 186 PK 187
+
Sbjct: 188 SR 189
Score = 203 (76.5 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 172 KYHTINGHNAEVRKALSRQE 191
Score = 182 (69.1 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 80 ARPHSIDGRVVEPKRAVARE 99
Score = 41 (19.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 281 GGSRNMGGPYGGGNYGPGGSGGSGGYG 307
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 350 (128.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 71/182 (39%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD + + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 202 (76.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D++ LQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 39 (18.8 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 250 GPGGGNFGGSPGYGGGRG 267
Score = 38 (18.4 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 234 YGSGRGFGDGYNGYGGGPG-GGNFGGS 259
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 217 (81.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L DY +RFG+V I D TGR RGFGFV+F D +D
Sbjct: 26 QEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVD 85
Query: 62 QVLQ-DKHTIDGRPVEAKRA 80
+VL+ +H +DG+ ++ KRA
Sbjct: 86 RVLELTEHKLDGKLIDPKRA 105
Score = 174 (66.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +TE+ R+YF YG + + + D T RGF F+TF E+ V +L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 175 NRYHQIGSGKCEIKVAQPKE 194
Score = 156 (60.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++ Y +G V D + D T R RGFGF+ F+ ++VD VL+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 170 VFHELNGKLVEVKRA 184
H+L+GKL++ KRA
Sbjct: 91 TEHKLDGKLIDPKRA 105
Score = 125 (49.1 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ D TE LR+YF +G++ + + D T RGF FV F+ + ++L++
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 176 RYHQIGSGKCEIKVAQPKE 194
Score = 37 (18.1 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 141 MYDQNTQRPRGFG 153
+Y Q R RGFG
Sbjct: 195 VYRQQQNRDRGFG 207
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 196 (74.1 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D+V+ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HTIDGRPVEAKRA 80
H ++G+ ++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 167 (63.8 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 144 KKYHNVGLSKCEIKVAMSKE 163
Score = 164 (62.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170
+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 171 FHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 145 (56.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQ 164
Score = 37 (18.1 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 208 GYNSQGYGGYGGY 220
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 349 (127.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 72/182 (39%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG V + ++ D+ + + RGFGF TF+ D VD ++ + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 199 (75.1 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G V + I+ D+ +G+ RGFGF F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 286 SAAPGALKSSWGSQNPSGYGTSGYDANAGYG 316
S + G ++ G YG G + GYG
Sbjct: 318 SGSFGGSRNMEGPYGGGNYGPGGSGGSGGYG 348
Score = 37 (18.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + GYG RG
Sbjct: 250 GLGGGNFGGIPGYGGGRG 267
Score = 37 (18.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G+ P G G++ + GYG+ RG
Sbjct: 217 GNFGP-GPGSNFRGGSYGYGSGRG 239
Score = 37 (18.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRG 320
+GS G G +GY G G N G
Sbjct: 234 YGSGRGFGDGYNGYGGGLG-GGNFG 257
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 341 (125.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 347 (127.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 71/182 (39%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 204 (76.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 173 KHHTINGHNAEVRKALSRQE 192
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
Score = 41 (19.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
Score = 39 (18.8 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 250 GPGGGNFGGSPGYGGGRG 267
Score = 38 (18.4 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 234 YGSGRGFGDGYNGYGGGPG-GGNFGGS 259
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 347 (127.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 73/181 (40%), Positives = 106/181 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S V +
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +DGR VE KRA+SRE+ + KKIFVGG+ E R
Sbjct: 74 PHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTGEYNLR 120
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 121 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 180
Query: 187 K 187
K
Sbjct: 181 K 181
Score = 199 (75.1 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 104 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 163
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 164 KYHTINGHNCEVKKALSKQE 183
Score = 181 (68.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 34/80 (42%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++F+ +G +TD VVM D T+R RGFGF+T+ E+ VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE-VDAAMC 71
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 72 ARPHKVDGRVVEPKRAVSRE 91
Score = 41 (19.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G G G G N+GYG N+G
Sbjct: 204 GGNFGGGGGNFGRGGNSGYG-NQG 226
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ GYG SG D G+G + G
Sbjct: 230 GSRGGGGYGGSG-DGYNGFGNDGG 252
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G SG G +G+ + GYG
Sbjct: 235 GGYGGSGDGYNGFGNDGGYG 254
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 353 RNQGGYG--GSSSSSSYGSGR 371
Score = 39 (18.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
S+ S N G G GY +G G + + G+
Sbjct: 286 SYDSYNNGG-GGGGYGGGSGSNFGGGGSYNDFGN 318
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 143 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 193 (73.0 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 191 (72.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 187 KYHTVNGHNCEVRKALSKQE 206
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ GYG SG D G+G + G
Sbjct: 251 GSRGGGGYGGSG-DGYNGFGNDGG 273
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G SG G +G+ + GYG
Sbjct: 256 GGYGGSGDGYNGFGNDGGYG 275
Score = 39 (18.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 294 SSWGSQNPSGYG--TSG-YDANAGYGANRGSA 322
S++G +G +SG Y GYG + S+
Sbjct: 345 SNFGPMKGGNFGGRSSGPYGGGGGYGGSSSSS 376
Score = 39 (18.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
S+ S N G G GY +G G + + G+
Sbjct: 307 SYDSYNNGG-GGGGYGGGSGSNFGGGGSYNDFGN 339
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ GYG SG D G+G + G
Sbjct: 230 GSRGGGGYGGSG-DGYNGFGNDGG 252
Score = 46 (21.3 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGSA 322
G SG G +G+ + GYG + S+
Sbjct: 235 GGYGGSGDGYNGFGNDGGYGGSSSSS 260
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 297 GSQNPSGYGTSGYDANAGYGANR 319
G N GYG G +++ YG+ R
Sbjct: 246 GFGNDGGYG--GSSSSSSYGSGR 266
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ GYG SG D G+G + G
Sbjct: 230 GSRGGGGYGGSG-DGYNGFGNDGG 252
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G SG G +G+ + GYG
Sbjct: 235 GGYGGSGDGYNGFGNDGGYG 254
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 352 RNQGGYG--GSSSSSSYGSGR 370
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ GYG SG D G+G + G
Sbjct: 230 GSRGGGGYGGSG-DGYNGFGNDGG 252
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G SG G +G+ + GYG
Sbjct: 235 GGYGGSGDGYNGFGNDGGYG 254
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 353 RNQGGYG--GSSSSSSYGSGR 371
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 339 (124.4 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 CK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 186 (70.5 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++AL ++E
Sbjct: 166 KYHTVNGHNCEVRKALCKQE 185
Score = 49 (22.3 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 200 (75.5 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D+ KLF+GG++W+TTE LRD+F ++G++ + + D TGR RGF F+VF++ +D+V
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 64 -LQDKHTIDGRPVEAKRALSR 83
D+H I+ + V+ K+A +R
Sbjct: 114 SAADEHIINSKKVDPKKAKAR 134
Score = 166 (63.5 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 36/121 (29%), Positives = 61/121 (50%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
KIFVGGL ++++ + YF +G++ +V + +D+ + +GF FITF++E V ++L+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 170 VFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAGG 229
++ GK V+VKRA PK + GR N Q + GG
Sbjct: 197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGG 256
Query: 230 F 230
+
Sbjct: 257 Y 257
Score = 145 (56.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+FVGGL TE R +F YG + + V D T R RGF FI F +A+D V
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 169 KVFHELNGKLVEVKRA 184
H +N K V+ K+A
Sbjct: 116 ADEHIINSKKVDPKKA 131
Score = 134 (52.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GK+F+GG+ + ++ ++ YF +FG++ +V + DK + +GF F+ F V+ +L+
Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195
Query: 66 D-KHTIDGRPVEAKRALSREE 85
K I G+ V+ KRA + E
Sbjct: 196 TPKQKIAGKEVDVKRATPKPE 216
Score = 41 (19.5 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G++ N GYG G
Sbjct: 289 GYG-GGFEGN-GYGGGGG 304
Score = 38 (18.4 bits), Expect = 6.1e-34, Sum P(3) = 6.1e-34
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 297 GSQNPSGYGTSGYDANAGYGAN 318
G N YG GY G+ N
Sbjct: 276 GYYNGYDYGYDGYGYGGGFEGN 297
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 341 (125.1 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 46 (21.3 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N G+
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGN 252
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 341 (125.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 70/182 (38%), Positives = 107/182 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H + G EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 186 PK 187
PK
Sbjct: 182 PK 183
Score = 196 (74.1 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 TTPHKVDGRVVEPKRAVSRE 93
Score = 184 (69.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT+ G E ++AL ++E
Sbjct: 166 KYHTVKGHNCEVRKALPKQE 185
Score = 44 (20.5 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
QN GYG S +++ YG+ R
Sbjct: 300 QNQGGYGVSS--SSSSYGSGR 318
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 336 (123.3 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 69/182 (37%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ ++VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 192 (72.6 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D + +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 49 (22.3 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 230 GSRGGGGYGGSG-DGYNGFG-NDGS 252
Score = 40 (19.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 300 RNQGGYG--GSSSSSSYGSGR 318
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 374 (136.7 bits), Expect = 6.6e-34, P = 6.6e-34
Identities = 75/184 (40%), Positives = 109/184 (59%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GKLF+GG++W T+ L++YF FG V+ V+IM+D T R RGFGF+ F +P +++VL+
Sbjct: 203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK 262
Query: 66 DK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDG 124
HT+DG+ ++ K A + KTKKIFVGG+ + +
Sbjct: 263 VPIHTLDGKKIDPKHATPKNRPRQAN----------------KTKKIFVGGVSQDTSAEE 306
Query: 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
+ YF +G V + V++ DQ T+R RGFGF+TFE ED VD V + FH + K VE K+A
Sbjct: 307 VKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Query: 185 LPKD 188
PK+
Sbjct: 367 QPKE 370
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 343 (125.8 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 70/182 (38%), Positives = 109/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YF YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 117 RDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 176
Query: 186 PK 187
+
Sbjct: 177 SR 178
Score = 204 (76.9 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 182 (69.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 69 ARPHSIDGRVVEPKRAVARE 88
Score = 41 (19.5 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 310 GGSRNMGGPYGGGNYGPGGSGGSGGYG 336
Score = 39 (18.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 238 GPGGGNFGGSPGYGGGRG 255
Score = 38 (18.4 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 222 YGSGRGFGDGYNGYGGGPG-GGNFGGS 247
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 341 (125.1 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 43 (20.2 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 297 GSQNPSGYGTSG--YDANAGYGANRGSAVSPL 326
GS+ GYG SG Y+ Y N+ S P+
Sbjct: 230 GSRGGGGYGGSGGSYNDFGNYN-NQSSNFGPM 260
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 284 RNQGGYG--GSSSSSSYGSGR 302
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 341 (125.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 193 (73.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 191 (72.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 287 RNQGGYG--GSSSSSSYGSGR 305
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 338 (124.0 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 71/182 (39%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-------------GKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H NG EV++AL
Sbjct: 117 RDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKAL 175
Query: 186 PK 187
+
Sbjct: 176 SR 177
Score = 188 (71.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT +G E ++ALSR+E
Sbjct: 160 KYHTKNGHNAEVRKALSRQE 179
Score = 179 (68.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 170 VFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 70 RPHSIDGRVVEPKRAVARE 88
Score = 42 (19.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
G + G+ P G G++ + GYG+ RG
Sbjct: 197 GDSRGGGGNSGP-GPGSNFRGGSDGYGSGRG 226
Score = 39 (18.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 302 SGYG---TSG-YDANAGYGANRG 320
+GYG SG + + GYG RG
Sbjct: 232 NGYGGGPRSGNFGGSPGYGGGRG 254
Score = 37 (18.1 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G YG G + GYG
Sbjct: 288 GPYGGGNYGPGGSGGSGGYG 307
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 211 (79.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FGDV + D TGR RGFGFV+F + +D
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA 170
Score = 169 (64.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 168 (64.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 144 (55.7 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQ 260
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 207 (77.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 169 (64.5 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 144 (55.7 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQ 262
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 333 (122.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 74/182 (40%), Positives = 110/182 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F +G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ TED
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQTLDA-------------HLTVKKIFVGGIKEN-TEDHL 119
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++QK +H +NG EV++AL
Sbjct: 120 RDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK-YHTVNGHNCEVRKAL 177
Query: 186 PK 187
K
Sbjct: 178 SK 179
Score = 180 (68.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI + TE LRDYF +G + + IM D+ +G+ RGF FV F D +D+++Q
Sbjct: 105 KIFVGGIK-ENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK 162
Query: 67 KHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 163 YHTVNGHNCEVRKALSKQE 181
Score = 176 (67.0 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +T VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
Score = 41 (19.5 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 299 QNPSGYGTSGYDANAGYG 316
QN GYG S ++ G G
Sbjct: 281 QNQGGYGGSSSSSSCGSG 298
Score = 39 (18.8 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 292 LKSSWGSQNPSGYGT--SGYDANAGYGANRGS 321
+ S+ SQ+ SG G G N+G G GS
Sbjct: 182 MASASSSQSLSGSGNFGGGCGGNSGRGGFSGS 213
Score = 37 (18.1 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 305 GTSGYDANAGYGANRGS 321
G G+ + G G N GS
Sbjct: 206 GRGGFSGSRGGGGNGGS 222
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 329 (120.9 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 69/182 (37%), Positives = 107/182 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+M+D T R RGFGFV +S ++ +
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E+
Sbjct: 94 RPHKVDGRLVEPKRAVSREDS-------------SKPFAHTTVKKIFVGGIKDDTEENHL 140
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YF+ +G + V +M D T RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 141 RDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKAL 200
Query: 186 PK 187
K
Sbjct: 201 SK 202
Score = 194 (73.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 39/80 (48%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF +FG + V IM D TG RGF FV F D +D+ V+Q
Sbjct: 125 KIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQ 184
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
Score = 193 (73.0 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R +FE +G +TD VVM D NT+R RGFGF+T+ + D V+ +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G+LVE KRA+ ++
Sbjct: 93 ARPHKVDGRLVEPKRAVSRE 112
Score = 45 (20.9 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 296 WGSQNPSGYGTSG-YDANAGYGANRG 320
+G +G G+ G Y N GYG G
Sbjct: 285 YGGGGGNGGGSPGNYGGNRGYGGGGG 310
Score = 43 (20.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 300 NPSGYGTSGYDANAG--------YGANRG 320
N +G+G GY G YG NRG
Sbjct: 276 NNNGFGGGGYGGGGGNGGGSPGNYGGNRG 304
Score = 39 (18.8 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 297 GSQNPSGYGTSGYDANAG 314
G + SG G SGY +G
Sbjct: 401 GGSSGSGGGGSGYGGGSG 418
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 321 (118.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 67/181 (37%), Positives = 106/181 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR +F ++G + V+MRD T R RG GF++++ +D +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
+ +DGR VE KRA+SRE+ + KKIFVGG+ E R
Sbjct: 75 RPHVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHLR 121
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
YFE YG + + +M D+ + + +GF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 DYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALS 180
Query: 187 K 187
K
Sbjct: 181 K 181
Score = 175 (66.7 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ +GF FV F D +D+ V+Q
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQ 163
Query: 66 DKHTIDGRPVEAKRALSREE 85
H ++G E ++ALS++E
Sbjct: 164 KYHPVNGHSCEVRKALSKQE 183
Score = 168 (64.2 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL TE+ R +FE +G TD VVM D NT+R RG GF+ + T + VD +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 170 VFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 75 RPH-VDGRVVEPKRAVSRE 92
Score = 53 (23.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GSQ GYG SG D G+G N GS
Sbjct: 230 GSQGGGGYGGSG-DGYNGFG-NDGS 252
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 326 (119.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 73/188 (38%), Positives = 106/188 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFT-------RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S V
Sbjct: 14 KLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEV 73
Query: 60 LDQVLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPT 119
+ H +DGR VE KRA+SRE+ + KKIFVGG+
Sbjct: 74 DAAMCARPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKED 120
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
E R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG
Sbjct: 121 TGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNC 180
Query: 180 EVKRALPK 187
EVK+AL K
Sbjct: 181 EVKKALSK 188
Score = 199 (75.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++
Sbjct: 111 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 170
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 171 KYHTINGHNCEVKKALSKQE 190
Score = 163 (62.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENY-------GHVTDVVVMYDQNTQRPRGFGFITFETED 161
+K+F+GGL T+D R++FE + G +TD VVM D T+R RGFGF+T+ E+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 162 AVDNVLQKVFHELNGKLVEVKRALPKD 188
VD + H+++G++VE KRA+ ++
Sbjct: 73 -VDAAMCARPHKVDGRVVEPKRAVSRE 98
Score = 47 (21.6 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 322 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGSGS 355
Score = 46 (21.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 239 GSRGSYGGGDGGYNGFGGDGGNYG 262
Score = 43 (20.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG SG + GYG+ R
Sbjct: 340 SSGSPYGGGYG-SG-SGSGGYGSRR 362
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 232 GYGGGGGGSRGSYGGGDG 249
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYG 316
+ +G + G GY + GYG
Sbjct: 252 NGFGGDGGNYGGGPGYSSRGGYG 274
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 330 (121.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 67/182 (36%), Positives = 107/182 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ TTE +LR+Y+ ++G ++ V++RD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H++DG+ V+ KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEKPGA-------------HLAVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV +AL
Sbjct: 129 RDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 201 (75.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF ++G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E +ALSR+E
Sbjct: 173 KYHTINGHHAEVGKALSRQE 192
Score = 173 (66.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL TE R Y++ +G +TD VV+ D + +R RGFGF+TF + VD +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 170 VFHELNGKLVEVKRALPKD 188
H ++GK+V+ KRA+ ++
Sbjct: 82 RPHSVDGKVVDPKRAVARE 100
Score = 42 (19.8 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 304 YGTSGYDANAGYGANR 319
YG G N GYG R
Sbjct: 332 YGPGGSGGNGGYGEPR 347
Score = 37 (18.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 287 AAPGALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
A PG + G N G G D GYG G
Sbjct: 221 AGPG--RKYKGGYNGYGRGPGLGDGYYGYGGGPG 252
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 328 (120.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 67/180 (37%), Positives = 108/180 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TTE +LR Y+ ++G+++ V++RD + R RG GFV FS + +D +
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR +E +RA+ RE ++ KK+FVGG+ E
Sbjct: 70 RPHSIDGRVLEPRRAIPRE-------------ASGQRGAHWTLKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + ++ D+ + R RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 117 REYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKAL 176
Score = 186 (70.5 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LR+YF ++G + + I+ D+ +GR RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQ 160
Query: 66 DKHTIDGRPVEAKRALS 82
H I+G E ++ALS
Sbjct: 161 KYHAINGHHAEVRKALS 177
Score = 176 (67.0 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 31/80 (38%), Positives = 54/80 (67%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R+Y++ +G +TD VV+ D +QR RG GF+TF + VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G+++E +RA+P++
Sbjct: 69 ARPHSIDGRVLEPRRAIPRE 88
Score = 44 (20.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 291 ALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
++ SSWG G GT GYG S S G+
Sbjct: 198 SVSSSWGGNFGRGPGTKFRGEADGYGNGPRSRDSCQGY 235
Score = 41 (19.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGS 321
+ + P GYG + GYG N G+
Sbjct: 257 YAGRGP-GYGNQWEFSGGGYGNNFGN 281
Score = 40 (19.1 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 304 YGTSGYDANAGYGANRG 320
YG G + GYG G
Sbjct: 312 YGPGGSGGSGGYGGRSG 328
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 201 (75.8 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D+V+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 67 K-HTIDGRPVEAKRA 80
K H ++G+ ++ KRA
Sbjct: 62 KEHKLNGKVIDPKRA 76
Score = 169 (64.5 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 146 KKYHNVGLSKCEIKVAMSKE 165
Score = 169 (64.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 62 KEHKLNGKVIDPKRA 76
Score = 144 (55.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 147 KYHNVGLSKCEIKVAMSKEQ 166
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 75/171 (43%), Positives = 105/171 (61%)
Query: 19 EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-QDKHTIDGRPVEA 77
EG LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+VL Q +H +D + ++
Sbjct: 1 EG-LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 59
Query: 78 KRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD 137
K A R Q +TKKIFVGGL T + + YFE +G V D
Sbjct: 60 KVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 104
Query: 138 VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188
++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K+A PK+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 166 (63.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +TT ++ YF +FG V ++M DKTT R RGFGFV F ++++V +
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 75/171 (43%), Positives = 105/171 (61%)
Query: 19 EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-QDKHTIDGRPVEA 77
EG LR+YF +FG+ + ++MRD T R RGFGFV F D + +D+VL Q +H +D + ++
Sbjct: 1 EG-LREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 59
Query: 78 KRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD 137
K A R Q +TKKIFVGGL T + +QYFE +G V D
Sbjct: 60 KVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 104
Query: 138 VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188
++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K+A PK+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 167 (63.8 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +TT ++ YF +FG V ++M DKTT R RGFGFV F ++++V +
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 325 (119.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 66/182 (36%), Positives = 109/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++ +TTE +L++Y+ ++G+++ V++R + + RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR V+ KRA+SRE+ KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVDPKRAVSREKSEKQGSLV-------------NVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV +AL
Sbjct: 129 REYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 190 (71.9 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
KLF+GGI DT E LR+YF ++G + + I+ D+ +G+ RGFGFV F D +D++ LQ
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 66 DKHTIDGRPVEAKRALSREE 85
H I+G E +ALSR+E
Sbjct: 173 KYHAINGHRAEVGKALSRQE 192
Score = 166 (63.5 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 29/80 (36%), Positives = 52/80 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ + Y++ +G +TD VV+ +Q+ RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++V+ KRA+ ++
Sbjct: 81 ARPHSIDGRVVDPKRAVSRE 100
Score = 41 (19.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGS 321
+ + P GYG + GYG N G+
Sbjct: 280 YAGRRP-GYGNQWEFSGGGYGNNFGN 304
Score = 40 (19.1 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 304 YGTSGYDANAGYGANRG 320
YG G + GYG G
Sbjct: 335 YGPGGNGGSGGYGGGSG 351
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 318 (117.0 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 69/182 (37%), Positives = 105/182 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVG E
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRPGA-------------HLTVKKIFVG---EDTEEHHL 111
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 112 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 171
Query: 186 PK 187
K
Sbjct: 172 SK 173
Score = 191 (72.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 35/79 (44%), Positives = 55/79 (69%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 68 RPHKVDGRVVEPKRAVSRE 86
Score = 170 (64.9 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+G DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 156 KYHTVNGHNCEVRKALSKQE 175
Score = 45 (20.9 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 291 ALKSSWGSQNPSGYGTSGYDANAGYGANR 319
A S G SG G G +++ YG+ R
Sbjct: 179 ASSSQRGRSGQSGRGYGGSSSSSSYGSGR 207
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 321 (118.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 68/186 (36%), Positives = 108/186 (58%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME ++ KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++
Sbjct: 1 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 60 LDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
+D + + H ++GR VE KRA+SRE+ Y KKIFVGG+
Sbjct: 61 VDAAMNARPHKVNGRVVEPKRAVSREDSQRPDA-------------YLTVKKIFVGGIKE 107
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
E R YF YG + ++ D+ + + RGF F+TF+ D+VD ++ + +H +NG
Sbjct: 108 DTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHN 167
Query: 179 VEVKRA 184
EV++A
Sbjct: 168 CEVRKA 173
Score = 199 (75.1 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 5 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ H++NG++VE KRA+ ++
Sbjct: 65 MNARPHKVNGRVVEPKRAVSRE 86
Score = 169 (64.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + I+ D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 158
Query: 66 DKHTIDGRPVEAKRALSRE 84
HT++G E ++A S +
Sbjct: 159 KYHTVNGHNCEVRKAPSNQ 177
Score = 41 (19.5 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 297 GSQNPSGYGTSG--YDANAGYGANRG 320
GS+ GYG SG Y+ G+N G
Sbjct: 214 GSRGGGGYGGSGDGYNGIDNDGSNFG 239
Score = 39 (18.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 285 ISAAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
+ AP + GS N G G+ N +G RG S G
Sbjct: 170 VRKAPSNQRGRSGSGNFGGGRGGGFGGNDNFG--RGGNFSGRG 210
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 311 (114.5 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 70/188 (37%), Positives = 103/188 (54%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
ME+ KLF+GG+ TT+ LR++F ++G ++ V+++++ R R FGFV +S P
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 61 DQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPT 119
D + + H +DG VE KRA++RE+ K KKIF+GGL
Sbjct: 65 DSAMSARPHILDGNNVELKRAVAREDAGKPEALA-------------KVKKIFIGGLKDD 111
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+ ED R F +G V V+ D+ T + RGFGF+ FE D+ D + FH +NG V
Sbjct: 112 IEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKV 171
Query: 180 EVKRALPK 187
EVK+AL K
Sbjct: 172 EVKKALTK 179
Score = 183 (69.5 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL T+DG R +FE YG +TD VV+ +Q +R R FGF+T+ + D D+ +
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 170 VFHELNGKLVEVKRALPKD 188
H L+G VE+KRA+ ++
Sbjct: 71 RPHILDGNNVELKRAVARE 89
Score = 179 (68.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG+ D E LRD F++FG V + ++ DK TG+ RGFGFV F D D+ +
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I+G VE K+AL+++E
Sbjct: 162 KFHMINGHKVEVKKALTKQE 181
Score = 50 (22.7 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 304 YGTSGYDANAGYGANRG 320
YG GY N GYG G
Sbjct: 218 YGGGGYGGNDGYGGGYG 234
Score = 43 (20.2 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 296 WGSQNPSGYGTSGY-DANAGYGANRG 320
+G GYG GY D GYG G
Sbjct: 233 YGGGYGGGYG-GGYGDQMEGYGGGNG 257
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 292 (107.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/190 (35%), Positives = 101/190 (53%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ T+E LR +F FG ++ V++ + T R R FGFV +S+
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKG 112
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E ++F +G V ++ D+ + + RGFGF+ F+ DA D FH + G
Sbjct: 113 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 172
Query: 179 VEVKRALPKD 188
VEVK+A+PK+
Sbjct: 173 VEVKKAVPKE 182
Score = 176 (67.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F + D+
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 163
Query: 67 K-HTIDGRPVEAKRALSREEQH 87
K H I G VE K+A+ +E+ H
Sbjct: 164 KFHPIQGHRVEVKKAVPKEDIH 185
Score = 68 (29.0 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 286 SAAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
S G SSWG ++ SG GY GYG GS
Sbjct: 273 SGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGRCGS 308
Score = 40 (19.1 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 305 GTSGYDANAGYGANRG 320
G GY++ GYG G
Sbjct: 218 GGGGYNSYGGYGGGGG 233
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 312 (114.9 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 66/182 (36%), Positives = 105/182 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ + TT+ L+ +F ++G++ VV+M+D T R RGFGF+ +S ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H IDGR VE KRA+ R+E KK+FVGGL E+
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGAT-------------VKKLFVGGLRDDHDEECL 131
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF+++G + V ++ D++T + RGF FI F+ D VD ++ + H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 186 PK 187
K
Sbjct: 192 AK 193
Score = 200 (75.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 36/79 (45%), Positives = 54/79 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+DG + +FE +G++ DVVVM D T+R RGFGFIT+ +DN
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 169 KVFHELNGKLVEVKRALPK 187
H+++G+ VE KRA+P+
Sbjct: 84 ARPHKIDGRTVEPKRAVPR 102
Score = 169 (64.5 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
KLF+GG+ D E LR+YF FG + V I+ DK TG+ RGF F+ F D +D++ LQ
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 66 DKHTIDGRPVEAKRALSREE 85
H+I + ++ K+A+++++
Sbjct: 176 KTHSIKNKTLDVKKAIAKQD 195
Score = 46 (21.3 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
G W GYG G ++N +G N G
Sbjct: 280 GGGNGGWNGGGGGGYG--GGNSNGSWGGNGG 308
Score = 43 (20.2 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 295 SWGSQNPSG-YGTSGYDANAGYGANRG 320
+WG G +G SG + G G G
Sbjct: 237 NWGGAGGGGGFGNSGGNFGGGQGGGSG 263
Score = 41 (19.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 296 WGSQN-PSGYGT-SGYDANAGYGANRGS 321
WG QN +G G G G+G + G+
Sbjct: 226 WGGQNRQNGGGNWGGAGGGGGFGNSGGN 253
Score = 41 (19.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 290 GALKSSWGSQNPSGYGTSG----YDANAGYGANRGS 321
G SWG G G G Y + G G R S
Sbjct: 297 GNSNGSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNS 332
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 140
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 141 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 200
Query: 186 PK 187
K
Sbjct: 201 SK 202
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 93 ARPHKVDGRVVEPKRAVSRE 112
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 73/182 (40%), Positives = 105/182 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KL IGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D V
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 69 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 115
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 116 RDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKAL 175
Query: 186 PK 187
K
Sbjct: 176 SK 177
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D +G+ RGF FV F D +D+++
Sbjct: 100 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQ 159
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I+G E K+ALS++E
Sbjct: 160 KYHIINGHNCEVKKALSKQE 179
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+ +GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 68 ARPHKVDGRVVEPKRAVSRE 87
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++++TT+ +LR +F R+G ++ V+MRD T RPRGFGFV ++ +D +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVG + E
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGSIKEDTEEHHL 114
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 115 REYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174
Query: 186 PK 187
K
Sbjct: 175 SK 176
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/79 (44%), Positives = 55/79 (69%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+ GL T++ R +FE +G +TD VVM D NT+RPRGFGF+T+ T + VD +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 68 RPHKVDGRVVEPKRAVSRE 86
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+G I DT E LR+YF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQ 158
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 159 KYHTVNGHNCEVRKALSKQE 178
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 292 (107.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 68/190 (35%), Positives = 101/190 (53%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ T+E LR +F FG ++ V++ + T R R FGFV +S+
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKG 107
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E ++F +G V ++ D+ + + RGFGF+ F+ DA D FH + G
Sbjct: 108 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 167
Query: 179 VEVKRALPKD 188
VEVK+A+PK+
Sbjct: 168 VEVKKAVPKE 177
Score = 176 (67.0 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F + D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 67 K-HTIDGRPVEAKRALSREEQH 87
K H I G VE K+A+ +E+ H
Sbjct: 159 KFHPIQGHRVEVKKAVPKEDIH 180
Score = 60 (26.2 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGAN 318
SSWG ++ SG GY GYG +
Sbjct: 284 SSWGGRSNSGPYRGGYGGGGGYGGS 308
Score = 45 (20.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G G G GY++ GYG G
Sbjct: 208 GLSKGGGGGGGGYNSYGGYGGGGG 231
Score = 45 (20.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGANRGSAVSPLGH 328
+S+G G G GY+A G G S G+
Sbjct: 221 NSYGGYGGGGGGGGGYNAYGGGGGGSSYGGSDYGN 255
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 292 (107.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 68/190 (35%), Positives = 101/190 (53%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ T+E LR +F FG ++ V++ + T R R FGFV +S+
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKG 107
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E ++F +G V ++ D+ + + RGFGF+ F+ DA D FH + G
Sbjct: 108 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 167
Query: 179 VEVKRALPKD 188
VEVK+A+PK+
Sbjct: 168 VEVKKAVPKE 177
Score = 171 (65.3 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F + D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
Score = 60 (26.2 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGAN 318
SSWG ++ SG GY GYG +
Sbjct: 279 SSWGGRSNSGPYRGGYGGGGGYGGS 303
Score = 44 (20.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 305 GTSGYDANAGYGANRGSAVSPLG 327
G GY++ GYG G + G
Sbjct: 213 GGGGYNSYGGYGGGGGGGYNAYG 235
Score = 40 (19.1 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 290 GALKSSWGSQNP-SGYGTSGYDANAGYGANRGSA 322
G K G N GYG G YG G +
Sbjct: 208 GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS 241
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 292 (107.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 68/190 (35%), Positives = 101/190 (53%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ T+E LR +F FG ++ V++ + T R R FGFV +S+
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKG 112
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E ++F +G V ++ D+ + + RGFGF+ F+ DA D FH + G
Sbjct: 113 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 172
Query: 179 VEVKRALPKD 188
VEVK+A+PK+
Sbjct: 173 VEVKKAVPKE 182
Score = 176 (67.0 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F + D+
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 163
Query: 67 K-HTIDGRPVEAKRALSREEQH 87
K H I G VE K+A+ +E+ H
Sbjct: 164 KFHPIQGHRVEVKKAVPKEDIH 185
Score = 60 (26.2 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGAN 318
SSWG ++ SG GY GYG +
Sbjct: 284 SSWGGRSNSGPYRGGYGGGGGYGGS 308
Score = 43 (20.2 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 285 ISAAPGALKSSWGSQNPSGYGTSGYDANAGYGANRGSA 322
+S G +S+G G G + Y G G++ G +
Sbjct: 214 LSKGGGGGYNSYGGYGGGGGGYNAYGGGGGGGSSYGGS 251
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 299 (110.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 67/182 (36%), Positives = 99/182 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ TT LR YF +FG+++ V++++ R R FGFV +S D +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DG+ VE KRA++RE+ K KKIFVGGL + E
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAGRPEALA-------------KVKKIFVGGLKDDIEEKDL 115
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
++F +G + V+ D++T + RGFGF+ FE D+ D + FH +NG VEVK+AL
Sbjct: 116 TEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKAL 175
Query: 186 PK 187
K
Sbjct: 176 TK 177
Score = 187 (70.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
K K+FVGGL T DG R YFE +G++TD VV+ + QR R FGF+T+ T + D
Sbjct: 6 KLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA 65
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ H ++GK VEVKRA+ ++
Sbjct: 66 MAARPHVVDGKNVEVKRAVARE 87
Score = 167 (63.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ D E L ++F++FG + + ++ DK TG+ RGFGFV F D D+ +
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I+G VE K+AL+++E
Sbjct: 160 KFHMINGHKVEVKKALTKQE 179
Score = 51 (23.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
G ++ +G GYG G GYG N G
Sbjct: 199 GRNQNGFGGGRGGGYGGYGGGYGGGYGGNDG 229
Score = 47 (21.6 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 303 GYGTSGYDAN-AGYGANRGS 321
GYG GY N GYG + GS
Sbjct: 219 GYG-GGYGGNDGGYGGSYGS 237
Score = 46 (21.3 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
GS GYG GY GYG G + G
Sbjct: 233 GSYGSGGYG-GGY--GGGYGGGYGEQMGGYG 260
Score = 40 (19.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGY-DANAGYGANRG 320
G + S +G SGY ++GYG +G
Sbjct: 261 GGNDYSDFG-SGYGQQSSGYGPMKG 284
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 309 (113.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 69/182 (37%), Positives = 107/182 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV+F+ +D +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ + ++GR +E KR +SRE+ Y KKIFVGG+ TE+
Sbjct: 75 RPNKVNGRVLEPKRFVSREDSQRPAA-------------YLTVKKIFVGGIKED-TEE-H 119
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
YFE YG + VM DQ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 120 EDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKAL 179
Query: 186 PK 187
K
Sbjct: 180 LK 181
Score = 162 (62.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+ GL T++ R +FE +G +T VVM D NT+R RGFGF+ F T + VD +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 170 VFHELNGKLVEVKRALPKD 188
+++NG+++E KR + ++
Sbjct: 75 RPNKVNGRVLEPKRFVSRE 93
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E DYF ++G + +M D+ +G+ RGF FV F + +DQ V+Q
Sbjct: 106 KIFVGGIKEDTEEH--EDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQ 163
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++AL ++E
Sbjct: 164 KYHTVNGHSCEVRKALLKQE 183
Score = 40 (19.1 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGAN 318
+S+ + SG G G G+G N
Sbjct: 187 ASFSQRGQSGSGNFGGGRGGGFGGN 211
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 302 (111.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 68/177 (38%), Positives = 101/177 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+G+LR++F ++G ++ V+MRD RGF FV +S + V+
Sbjct: 38 KLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCA 97
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H + G VE KRA+SRE+ + +KIFVGG+ E
Sbjct: 98 RPHKVVGCVVEPKRAVSREDS-------------IIPGAHLMVEKIFVGGIKEDTEEYNL 144
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
R YFE YG + + VM D+ + + RGF F+TF+ D VD V+QK +H +NG EVK
Sbjct: 145 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK-YHTVNGHNCEVK 200
Score = 146 (56.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+ R++FE +G +TD VVM D + RGF F+T+ + V V+
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 169 KVFHELNGKLVEVKRALPKD 188
H++ G +VE KRA+ ++
Sbjct: 97 ARPHKVVGCVVEPKRAVSRE 116
Score = 47 (21.6 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRG 320
S GS G +G+ +AG+G RG
Sbjct: 240 SRGSYGGGDGGFNGFGGDAGHGGRRG 265
Score = 37 (18.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 232 GYGGGGGGSRGSYGGGDG 249
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 201 (75.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 37/82 (45%), Positives = 58/82 (70%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ ++TT+ +LR +F ++G +++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQH 87
+ H +DGR VE +RA+SRE+ H
Sbjct: 75 RPHKVDGRVVEPERAVSREDSH 96
Score = 185 (70.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/80 (41%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +T+ VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE +RA+ ++
Sbjct: 74 ARPHKVDGRVVEPERAVSRE 93
Score = 157 (60.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDY ++G + + IM D+ +G+ RGF FV F D +D+++
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HT++ ++ALS++E
Sbjct: 161 KYHTVNDHNC-VRKALSKQE 179
Score = 148 (57.2 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
T KIFVGG+ E R Y E YG + + +M D+ + + RGF F+TF+ D+VD ++
Sbjct: 99 TVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIV 158
Query: 168 QKVFHELNGKLVEVKRALPK 187
+ +H +N V++AL K
Sbjct: 159 IRKYHTVNDHNC-VRKALSK 177
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 297 (109.6 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 64/177 (36%), Positives = 100/177 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIG ++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ ++GR VE KRA+SRE+ + KKIFVGG+ TE
Sbjct: 75 RPQKVNGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKED-TEHHL 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
R YFE YG + +M D+ + RGF F+TF+ D+VD ++ + +H +NG E +
Sbjct: 121 RDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETR 177
Score = 184 (69.8 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+G L T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
++NG++VE KRA+ ++
Sbjct: 74 ARPQKVNGRVVEPKRAVSRE 93
Score = 48 (22.0 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDA------NAGYGANRGS 321
G+ +G+Q SGYG SG YD+ G+G+ GS
Sbjct: 208 GSGGQGYGNQG-SGYGGSGSYDSYNNGGGRGGFGSGSGS 245
Score = 40 (19.1 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 299 QNPSGYGTSGYDANAGYGANR 319
+N GYG G +++ YG+ R
Sbjct: 293 RNQGGYG--GSSSSSSYGSGR 311
Score = 38 (18.4 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDANAGYGANRGSAVSPL 326
G + +GS + S +G G Y+ Y N+ S P+
Sbjct: 233 GGGRGGFGSGSGSNFGGGGSYNDFGNYN-NQSSNFGPM 269
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 305 (112.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 2 ESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
ES++ KLFIGG+ +T E +LR+Y+ ++G ++ V++RD ++ R RGFGFV+FS + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 61 DQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPT 119
D + + H+IDGR V +KR + REE TKK+FVGG+
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREESGKPGACVT-------------TKKLFVGGIKED 122
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
TE R YFE YG + + ++ + + R FGF+TF+ D VD ++ + +H +NG
Sbjct: 123 TTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHA 180
Query: 180 EVKRALPK 187
++++AL +
Sbjct: 181 QLEKALSR 188
Score = 183 (69.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DTTE LRDYF R+G + + I+R +GR FGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 DKHTIDGRPVEAKRALSRE 84
HTI+G + ++ALSR+
Sbjct: 171 KYHTINGHHAQLEKALSRQ 189
Score = 169 (64.5 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL E+ R Y++ +G +TD VV+ D ++QR RGFGF+ F + VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++V KR +P++
Sbjct: 81 ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 301 PSGYGTSGYDANAGYGANR 319
PSG G G N G G R
Sbjct: 211 PSGGGGGGGGGNFGAGPGR 229
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 305 (112.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 2 ESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
ES++ KLFIGG+ +T E +LR+Y+ ++G ++ V++RD ++ R RGFGFV+FS + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 61 DQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPT 119
D + + H+IDGR V +KR + REE TKK+FVGG+
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREESGKPGACVT-------------TKKLFVGGIKED 122
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
TE R YFE YG + + ++ + + R FGF+TF+ D VD ++ + +H +NG
Sbjct: 123 TTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHA 180
Query: 180 EVKRALPK 187
++++AL +
Sbjct: 181 QLEKALSR 188
Score = 183 (69.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DTTE LRDYF R+G + + I+R +GR FGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 DKHTIDGRPVEAKRALSRE 84
HTI+G + ++ALSR+
Sbjct: 171 KYHTINGHHAQLEKALSRQ 189
Score = 169 (64.5 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL E+ R Y++ +G +TD VV+ D ++QR RGFGF+ F + VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++V KR +P++
Sbjct: 81 ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 301 PSGYGTSGYDANAGYGANR 319
PSG G G N G G R
Sbjct: 211 PSGGGGGGGGGNFGAGPGR 229
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 305 (112.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 71/182 (39%), Positives = 102/182 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F + G ++ V+MRD T RGFGFV S +D +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 97 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLMVKKIFVGGIKEDTEEYNL 143
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG T+ + ++ RGF F+TF+ +D VD ++ + H +NG EVKRAL
Sbjct: 144 RDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRAL 201
Query: 186 PK 187
K
Sbjct: 202 SK 203
Score = 171 (65.3 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE G +TD VVM D T+ RGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 96 ARPHKVDGRVVEPKRAVSRE 115
Score = 163 (62.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G I + RGF FV F D +D+ V+Q
Sbjct: 128 KIFVGGIKEDTEEYNLRDYFEKYGKTE--TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E KRALS++E
Sbjct: 186 KHHTINGHNCEVKRALSKQE 205
Score = 38 (18.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG---ANRGS 321
G + S+G +G G N G G ++RGS
Sbjct: 240 GGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGS 274
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 305 (112.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 71/182 (39%), Positives = 102/182 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F + G ++ V+MRD T RGFGFV S +D +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 97 RPHKVDGRVVEPKRAVSREDS-------------VKPGAHLMVKKIFVGGIKEDTEEYNL 143
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG T+ + ++ RGF F+TF+ +D VD ++ + H +NG EVKRAL
Sbjct: 144 RDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRAL 201
Query: 186 PK 187
K
Sbjct: 202 SK 203
Score = 171 (65.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE G +TD VVM D T+ RGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 96 ARPHKVDGRVVEPKRAVSRE 115
Score = 163 (62.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G I + RGF FV F D +D+ V+Q
Sbjct: 128 KIFVGGIKEDTEEYNLRDYFEKYGKTE--TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E KRALS++E
Sbjct: 186 KHHTINGHNCEVKRALSKQE 205
Score = 38 (18.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG---ANRGS 321
G + S+G +G G N G G ++RGS
Sbjct: 240 GGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGS 274
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 298 (110.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 76/231 (32%), Positives = 108/231 (46%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ TTE LR++F +G ++ V++ + T R R FGFV +S
Sbjct: 22 MENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEE 81
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 82 ADAAMAASPHAVDGNSVELKRAVSREDS-------------AKPGAHAKVKKLFVGGLKG 128
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E Q+F +G V ++ D+ + + RGFGF+ F+ DA D FH + G
Sbjct: 129 DVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 188
Query: 179 VEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAGG 229
VEVK+A+PK+ G GNR S GG
Sbjct: 189 VEVKKAVPKEDIQAGGGGSARPSRGGRGGGRGRGGGGSGNRDHNGLSKGGG 239
Score = 44 (20.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 295 SWGSQNPSGYGTSGYDANAGYG 316
+WG ++ SG GY GYG
Sbjct: 304 NWGGRSNSGPYRGGY-GGGGYG 324
Score = 44 (20.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G K G + GYG G GYG
Sbjct: 233 GLSKGGGGYNSYGGYGGGGGGGYGGYG 259
Score = 44 (20.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 297 GSQNPSGY--GTSGYDANAGYGANRGSAVSPLG 327
G+++ +G G GY++ GYG G G
Sbjct: 227 GNRDHNGLSKGGGGYNSYGGYGGGGGGGYGGYG 259
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 289 (106.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 66/181 (36%), Positives = 100/181 (55%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT +LR +F ++G + V+MRD T RGFGFV ++ +D
Sbjct: 15 KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARS- 73
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +DGR VE KRA+SRE+ + +KIFVGG+ E R
Sbjct: 74 -HKVDGRVVEPKRAVSREDSQRPGA-------------HLTVRKIFVGGIKEDTEEHHLR 119
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
YF+ YG + + +M D+ + + RGF +TF+ D V+QK ++ +NG EV++AL
Sbjct: 120 DYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK-YYIVNGHNCEVRKALS 178
Query: 187 K 187
K
Sbjct: 179 K 179
Score = 168 (64.2 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T + R +FE +G + D VVM D NT+ RGFGF+T+ T VD
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARS 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ---HKVDGRVVEPKRAVSRE 90
Score = 164 (62.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF V F D V+Q
Sbjct: 103 KIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK 162
Query: 67 KHTIDGRPVEAKRALSREE 85
+ ++G E ++ALS++E
Sbjct: 163 YYIVNGHNCEVRKALSKQE 181
Score = 53 (23.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GSQ+ GYG SG D G+G + G+
Sbjct: 225 GSQSGGGYGGSG-DGYNGFGNDGGN 248
Score = 40 (19.1 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 292 LKSSWGSQNPSGYGTSGYDANAGYGAN 318
+ S+ S+ SG G G G+G N
Sbjct: 182 MASASSSRGRSGSGNFGGGRGGGFGGN 208
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 301 (111.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 70/183 (38%), Positives = 104/183 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFV-VFSDPSVLDQVLQ 65
KLFIG ++++TT+ +LR++F ++G + V+MRD R R FGFV +S +D +
Sbjct: 19 KLFIGCLSFETTDDSLREHFEKWGTLD-CVVMRDLQIKRSRSFGFVSTYSCVKEVDAAMC 77
Query: 66 DK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDG 124
+ H +DG VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 78 ARPHKVDGHVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYN 124
Query: 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++QK +H +NG EVK+A
Sbjct: 125 LRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK-YHTINGHNYEVKKA 183
Query: 185 LPK 187
+ K
Sbjct: 184 VSK 186
Score = 203 (76.5 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 35/79 (44%), Positives = 54/79 (68%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++Q
Sbjct: 110 KIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK 169
Query: 67 KHTIDGRPVEAKRALSREE 85
HTI+G E K+A+S++E
Sbjct: 170 YHTINGHNYEVKKAVSKQE 188
Score = 134 (52.2 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFI-TFETEDAVDNVL 167
+K+F+G L T+D R++FE +G + D VVM D +R R FGF+ T+ VD +
Sbjct: 18 RKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAM 76
Query: 168 QKVFHELNGKLVEVKRALPKD 188
H+++G +VE KRA+ ++
Sbjct: 77 CARPHKVDGHVVEPKRAVSRE 97
Score = 40 (19.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGAN 318
S GSQ G G N G+G N
Sbjct: 191 SAGSQRGRGGNFGGGGGNFGHGGN 214
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 281 (104.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 69/225 (30%), Positives = 105/225 (46%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ TT+ LR +F ++G ++ V++ ++ R R FGFV +S D +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DG V+ KRA++RE+ K KKIFVGGL + ++
Sbjct: 67 RPHIVDGNNVDLKRAVAREDAGKPEMLA-------------KVKKIFVGGLKDDIEDEHL 113
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+ YF +G + V+ D++T + RGFGF+ F+ D+ D + FH + G VEVK+AL
Sbjct: 114 QDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKAL 173
Query: 186 PKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNAGGF 230
K S F G G Y GF
Sbjct: 174 TKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGYYNDYGYQNNGF 218
Score = 60 (26.2 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 290 GALKSSWGSQNPSGYGT-SGYDANAGYG 316
G + +G QN +G+G SGYD+ GYG
Sbjct: 205 GGYYNDYGYQN-NGFGNNSGYDSQNGYG 231
Score = 50 (22.7 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G N GY +G+ N+GY + G
Sbjct: 206 GYYNDYGYQNNGFGNNSGYDSQNG 229
Score = 45 (20.9 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDANAGYGANRG 320
GA+K+ +G+ + SG +SG Y G G + G
Sbjct: 263 GAMKTGYGNYS-SGRQSSGPYPRGGGGGGSGG 293
Score = 40 (19.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 294 SSWGSQNPSGYGTS-GYDANAGYGANRG 320
S +G GY GY N G+G N G
Sbjct: 197 SGFGGGGRGGYYNDYGYQNN-GFGNNSG 223
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 293 (108.2 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 68/190 (35%), Positives = 102/190 (53%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME+ + KLFIGG+ T+E LR +F FG ++ V++ + T R R FGFV +S+
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDQVLQ-DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
D + H +DG VE KRA+SRE+ + K KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKG 107
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+ E ++F +G V ++ D+ + + RGFGF+ F++ DA D FH + G
Sbjct: 108 DVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHR 167
Query: 179 VEVKRALPKD 188
VEVK+A+PK+
Sbjct: 168 VEVKKAVPKE 177
Score = 174 (66.3 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HTIDGRPVEAKRALSREEQH 87
K H I G VE K+A+ +E+ H
Sbjct: 159 KFHPIQGHRVEVKKAVPKEDIH 180
Score = 47 (21.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 286 SAAPGALKSSWGSQNPSGYGTSGYDANAGYG 316
S G SWG ++ SG GY GYG
Sbjct: 273 SGGGGGGGGSWGGRSNSGPYRGGY--GGGYG 301
Score = 42 (19.8 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 288 APGALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
A G G + GYG GY A G G GS
Sbjct: 214 AKGGGGGGGGYNSYGGYG--GYGAYGGGGGGGGS 245
Score = 40 (19.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYG 316
G G G GY++ GYG
Sbjct: 212 GLAKGGGGGGGGYNSYGGYG 231
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 66/184 (35%), Positives = 104/184 (56%)
Query: 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64
E KL + GI WD L+DY ++FGD+ ++M+D++TGR RGFG+V F+ L
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 65 QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDG 124
+ +H + R +E K A +EE K +IFV +P +++E
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK---------------KVTRIFVARIPSSVSESD 106
Query: 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
FR +FE YG +TD+ + D N+++ RG GFITF + D+V+++++ H+L G V V RA
Sbjct: 107 FRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRA 165
Query: 185 LPKD 188
PK+
Sbjct: 166 TPKE 169
Score = 149 (57.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
KIFVG LP + D R YF +GH+ D + D RGFGF+TF D V ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 170 VFHELNGKLVEVKRALPKD 188
HE+ G+ V + A P D
Sbjct: 301 S-HEICGQEVAIDSATPLD 318
Score = 138 (53.6 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+G + + + LRDYF RFG + I +D RGFGFV F++ V D+V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHTIDGRPVEAKRALSREE 85
H I G+ V A +E
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
Score = 135 (52.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
++F+ I +E R +F R+G+++ + + +D + + RG GF+ FS ++ +++D
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHTIDGRPVEAKRALSREEQH 87
H + G V RA +E+ H
Sbjct: 152 THDLGGTTVAVDRATPKEDDH 172
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 279 (103.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 65/184 (35%), Positives = 100/184 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV--LDQVL 64
KLFIGG++ + T +LR + ++G ++ V+ RD T RGFGF+ + +V +D +
Sbjct: 15 KLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAAM 74
Query: 65 QDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTED 123
+ H +DGR VE KRA+SRE+ + KK FVGG+ E
Sbjct: 75 NARPHKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKTFVGGIKEDTEEH 121
Query: 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183
R YFE YG + + +M D + + R F F+TF+ D+VD ++ + +H +NG EVK+
Sbjct: 122 HLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKK 180
Query: 184 ALPK 187
AL K
Sbjct: 181 ALSK 184
Score = 177 (67.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K F+GGI DT E LRDYF ++G + + IM D +G+ R F FV F D +D+ V+Q
Sbjct: 108 KTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQ 166
Query: 66 DKHTIDGRPVEAKRALSREEQ 86
HT++G E K+ALS++EQ
Sbjct: 167 KYHTVNGHNCEVKKALSKQEQ 187
Score = 158 (60.7 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE--DAVDNV 166
+K+F+GGL +T + R + E +G +TD VV D NT+ RGFGFIT T + VD
Sbjct: 14 RKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAA 73
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ H+++G++VE KRA+ ++
Sbjct: 74 MNARPHKVDGRVVEPKRAVSRE 95
Score = 56 (24.8 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GSQ GYG SG D +G+G N GS
Sbjct: 229 GSQGGGGYGGSG-DVYSGFG-NDGS 251
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/182 (36%), Positives = 106/182 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++ ++ V+MRD + R RGFG + ++ +D +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE K A+SRE+ H + KKIFVGG E
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGA-------------HLTVKKIFVGGSKEDTEEHHL 107
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D + + RGF F+TF+ +D+VDN++ + +H +NG EV++AL
Sbjct: 108 RVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKAL 167
Query: 186 PK 187
K
Sbjct: 168 LK 169
Score = 165 (63.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GG DT E LR YF ++G + + IM D +G+ RGF FV F D +D V+Q
Sbjct: 92 KIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQ 151
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++AL ++E
Sbjct: 152 KYHTVNGHNCEVRKALLKQE 171
Score = 155 (59.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ R +FE + +TD V+M D N++R RGFG I + T + VD +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G++VE K A+ ++
Sbjct: 61 RPHKVDGRVVEPKVAVSRE 79
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 294 (108.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 65/182 (35%), Positives = 103/182 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIG ++ +TTE +L +Y+ ++G ++ V++RD + + R FGF+ FS + LD +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H IDG+ V KRA+ RE+ H KK+FVGG+ + E
Sbjct: 82 RPHFIDGKMVMPKRAVPRED-HGKLGALIT------------VKKLFVGGITEDMKEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D + + RGFGFITF+ D VD ++ + H +NG EV++AL
Sbjct: 129 RDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKAL 188
Query: 186 PK 187
+
Sbjct: 189 SR 190
Score = 199 (75.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI D E LRDYF ++G ++ + I+ D +G+ RGFGF+ F D +D+ VLQ
Sbjct: 113 KLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQ 172
Query: 66 DKHTIDGRPVEAKRALSREEQ 86
HTI+G E ++ALSR+E+
Sbjct: 173 KNHTINGHRAEVRKALSRQER 193
Score = 152 (58.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+G L TE+ Y+ +G++TD V++ D +Q+ R FGFITF + +D +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 170 VFHELNGKLVEVKRALPKD 188
H ++GK+V KRA+P++
Sbjct: 82 RPHFIDGKMVMPKRAVPRE 100
Score = 46 (21.3 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 114 GGLPPTLTEDGFRQYFENYG 133
GG ++GFR ++NYG
Sbjct: 272 GGSADGYQDEGFRACYDNYG 291
Score = 37 (18.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 296 WGSQNPSGYGTSGYDANAGYGA 317
+G G G+ GY AG G+
Sbjct: 234 YGRGRQFGDGSHGYGGRAGGGS 255
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 67/182 (36%), Positives = 103/182 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG +++TT+ +LR +F + G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KR S+E+ + KKIF GG+ E
Sbjct: 75 RPHKVDGRVVEPKRTSSKEDSQRPGA-------------HLTVKKIFAGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 185 (70.2 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 166 KYHTVNGHNWEVRKALSKQE 185
Score = 168 (64.2 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GG T++ R +F+ G +TD VVM D NT+R RGFGF+T+ + VD +
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KR K+
Sbjct: 74 ARPHKVDGRVVEPKRTSSKE 93
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 68/182 (37%), Positives = 105/182 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+M D T R RGFGFV ++ +D +
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 83 RPQKMDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 129
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H NG EV++AL
Sbjct: 130 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKAL 189
Query: 186 PK 187
K
Sbjct: 190 SK 191
Score = 184 (69.8 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 114 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 173
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT +G E ++ALS++E
Sbjct: 174 KYHTGNGHNCEVRKALSKQE 193
Score = 179 (68.1 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 169 KVFHELNGKLVEVKRALPKD 188
+++G++VE KRA+ ++
Sbjct: 82 ARPQKMDGRVVEPKRAVSRE 101
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 272 (100.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 65/183 (35%), Positives = 98/183 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++ TT+ +LR + + G + V+MRD T RGFGF ++ +D V+
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 75 RPHKMDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYF-ENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
+ YF E Y + + +M D+ + + RGF F+TF+ D VD ++ + H +NG EV++A
Sbjct: 122 KDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRKA 181
Query: 185 LPK 187
L K
Sbjct: 182 LSK 184
Score = 166 (63.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+ GL T++ R + E G + D VVM D NT+ RGFGF T+ T + VD V+
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 75 RPHKMDGRVVEPKRAVSRE 93
Score = 164 (62.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYF-TRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VL 64
K+F+GGI DT E L+DYF ++ + + IM D+ +G+ RGF FV F D +D+ V+
Sbjct: 106 KIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVI 165
Query: 65 QDKHTIDGRPVEAKRALSREE 85
Q H ++G E ++ALS++E
Sbjct: 166 QKCHPVNGHDHEVRKALSKQE 186
Score = 52 (23.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG+SG D G+G N GS
Sbjct: 231 GSRGGGGYGSSG-DGYNGFG-NDGS 253
Score = 38 (18.4 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 299 QNPSGYGTSGYDANAGYG 316
+N GYG S +N G G
Sbjct: 301 RNQGGYGGSRSSSNYGNG 318
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 306 (112.8 bits), Expect = 4.6e-27, P = 4.6e-27
Identities = 77/182 (42%), Positives = 107/182 (58%)
Query: 18 TEGTLRDYFTRFGDVSQVVIMRDKTTGRPR--GFGFVVFSDPSVLDQVL-QDKHTIDGRP 74
TEG LR+YF +FG+V + ++MRD T R R GFGFV F D + +D+VL Q +H +D +
Sbjct: 120 TEG-LREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKT 178
Query: 75 VEA--KRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENY 132
V+ K A R Q +TKKIFVGGL T + +QYFE +
Sbjct: 179 VQIDPKVAFPRRAQPKVQMVT-------------RTKKIFVGGLSVNTTVEDVKQYFEQF 225
Query: 133 G--HVTDVVVMYDQNTQRPRG--FGFITFETEDAVDNVLQKVFHELNGKLVEV--KRALP 186
V D ++M+D+ T R RG FGF+TFE+ED V+ V + FHE+N K+V+V K+A P
Sbjct: 226 EKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQVECKKAQP 285
Query: 187 KD 188
K+
Sbjct: 286 KE 287
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFG--DVSQVVIMRDKTTGRPRG--FGFVVFSDPSVLDQ 62
K+F+GG++ +TT ++ YF +F V ++M DKTT R RG FGFV F ++++
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 63 VLQDK-HTIDGR--PVEAKRALSRE 84
V + H I+ + VE K+A +E
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPKE 287
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 305 (112.4 bits), Expect = 6.0e-27, P = 6.0e-27
Identities = 69/180 (38%), Positives = 104/180 (57%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+A TTE L+ ++ ++G V VV+MRD T R RGFGF+ ++ ++D+ ++
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H IDG+ VEAKRAL R E+ KK+FVGGL E+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETN-------------ISVKKLFVGGLKDNHDEECL 139
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF +G+V V ++ D+ T + RGF F+ F+ DAVD + K H + V+VK+++
Sbjct: 140 REYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
Score = 189 (71.6 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL P TE+ + ++ +G V DVVVM D T+R RGFGFIT+ VD +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 169 KVFHELNGKLVEVKRALPK 187
H ++GK VE KRALP+
Sbjct: 92 NRPHIIDGKTVEAKRALPR 110
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 66/182 (36%), Positives = 99/182 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++ TT TLR +F++FG V+ V++RD + RGFGFV + DP ++ V +
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRA 92
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ HTID + VE K AL R++ + +K+IF+GGL E+
Sbjct: 93 RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIV 152
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF +G V V ++ D+ T R R FGF+ F + + L H + LVEVKR+
Sbjct: 153 REYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRST 212
Query: 186 PK 187
K
Sbjct: 213 QK 214
Score = 157 (60.3 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
Y +KIF+GGL T + R +F +G V D VV+ D + RGFGF+T+ +V+
Sbjct: 28 YEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVE 87
Query: 165 NVLQKVFHELNGKLVEVKRALPK 187
V + H ++ K+VE K ALP+
Sbjct: 88 IVQRARPHTIDNKIVETKHALPR 110
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 66/189 (34%), Positives = 106/189 (56%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME ++ KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++
Sbjct: 4 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63
Query: 60 LDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
+D + + H +DGR VE KRA+S E+ + KIFVG +
Sbjct: 64 VDAAMNARPHKVDGRVVEPKRAVSIEDSQRPGA--------------YLNMKIFVGAIKE 109
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
E R YF YG + ++ D+ + + RGF F+TF+ D+VD ++ + +H +NG
Sbjct: 110 DTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHN 169
Query: 179 VEVKRALPK 187
EV++A K
Sbjct: 170 CEVRKAPSK 178
Score = 170 (64.9 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+G I DT E LRDYF ++G + I+ D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++A S++E
Sbjct: 161 KYHTVNGHNCEVRKAPSKQE 180
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 66/181 (36%), Positives = 100/181 (55%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD- 66
L IGG++++TT+ +LR++ ++G ++ V+M D T RGFGFV +S +D +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +DGR VE KRA+SRE+ + KKIFVGG+ E R
Sbjct: 61 PHKVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNLR 107
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + H +N EVK+A+
Sbjct: 108 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVS 167
Query: 187 K 187
K
Sbjct: 168 K 168
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-Q 65
K+F+GGI DT E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++ Q
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 66 DKHTIDGRPVEAKRALSREE 85
+ H I+ E K+A+S++E
Sbjct: 151 EHHAINRHNCEVKKAVSKQE 170
Score = 160 (61.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/78 (38%), Positives = 50/78 (64%)
Query: 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170
+ +GGL T+D R++ E +G +TD VVM D T+ RGFGF+T+ + VD +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 171 FHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 61 PHKVDGRVVEPKRAVSRE 78
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 275 (101.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 64/181 (35%), Positives = 101/181 (55%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF GG+ ++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ P +++V +
Sbjct: 22 KLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-P--VEEVDRK 78
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
HT + RA+SRE+ + KKIFVGG+ E R
Sbjct: 79 DHTRWMEELWNLRAVSREDSQTPGA-------------HLTVKKIFVGGIKEDTEEHHLR 125
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
Y E YG + V +M D+ + + GF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 126 DYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 185
Query: 187 K 187
K
Sbjct: 186 K 186
Score = 177 (67.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDY ++G + V IM D+ +G+ GF FV F D +D+ V+Q
Sbjct: 109 KIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQ 168
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 169 KYHTVNGHNCEVRKALSKQE 188
Score = 146 (56.5 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
+K+F GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ + VD
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
Score = 38 (18.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 299 QNPSGYGTSGYDANAGYG 316
QN GYG G +++ YG
Sbjct: 245 QNQGGYG--GSSSSSSYG 260
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 168 (64.2 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FI G++WDT++ L FG+V +I D TGR RGFGFV+F + + +D
Sbjct: 12 QQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVD 66
Query: 62 QVLQDK-HTIDGRPVEAKRALSREE 85
+VL+ K H +D ++ KRA + +E
Sbjct: 67 KVLELKEHKLDSMLIDPKRAKALKE 91
Score = 147 (56.8 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P E+ ++Y +G + ++ + D T RGF FIT+ E V +L+
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 154 NRYHQIGSGKCEIKVAEPKE 173
Score = 122 (48.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +++Y FG++ + + D T RGF F+ ++D + ++L++
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLEN 154
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 155 RYHQIGSGKCEIKVAEPKE 173
Score = 111 (44.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 132 YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
+G V D ++ D T R RGFGF+ F+ +VD VL+ H+L+ L++ KRA
Sbjct: 34 FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLELKEHKLDSMLIDPKRA 86
Score = 55 (24.4 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 290 GALKSSWGS-QNPSGYGTSGY-DANAG-YGANRGSA 322
G S++G QN S YG+ GY + N G YG +G A
Sbjct: 220 GNYNSAYGGDQNYSDYGSYGYTEFNYGNYGYGQGYA 255
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 265 (98.3 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 66/182 (36%), Positives = 98/182 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++T + +LR++F + G ++ V+MRD T RGFGFV +S +D +
Sbjct: 33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCA 92
Query: 67 -KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
H +DGR VE K+A+SRE+ + KK FVGG+ E
Sbjct: 93 WLHKVDGRVVEPKKAVSREDS-------------VKLGAHLMVKKTFVGGIKEDTEEYNL 139
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+ YFE YG + + M ++ + R RGF F F D VD ++ + H +NG EVK+AL
Sbjct: 140 KDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKAL 196
Query: 186 PK 187
K
Sbjct: 197 SK 198
Score = 168 (64.2 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K F+GGI DT E L+DYF ++G + + M ++ +GR RGF F +F D V V+Q
Sbjct: 124 KTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHDVDKIVVQK 181
Query: 67 KHTIDGRPVEAKRALSREEQH 87
HTI+G E K+ALS+ E H
Sbjct: 182 HHTINGHNCEVKKALSKLEMH 202
Score = 165 (63.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL +D R++F+ G +TD VVM D T+ RGFGF+T+ + VD +
Sbjct: 32 RKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMC 91
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE K+A+ ++
Sbjct: 92 AWLHKVDGRVVEPKKAVSRE 111
Score = 46 (21.3 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 236 GSRGSFGGGDGGYNGVGGDGGNYG 259
Score = 45 (20.9 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 289 PG-ALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
PG + + +G P GYG G + G G G
Sbjct: 262 PGYSSRGGYGGGGP-GYGNQGGGSGGGGGGGSG 293
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 266 (98.7 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 57/151 (37%), Positives = 85/151 (56%)
Query: 38 MRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXX 96
MRD + R RGFGFV FS + +D + + H+IDGR VE KRA++REE
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES---------- 50
Query: 97 XXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFIT 156
+ KK+FVGG+ E R YFE YG + + ++ D+ + + RGFGF+T
Sbjct: 51 ---GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 107
Query: 157 FETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
F+ D VD ++ + +H +NG EV++AL +
Sbjct: 108 FDDHDPVDKIVLQKYHTINGHNAEVRKALSR 138
Score = 203 (76.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 40/80 (50%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLF+GGI DT E LRDYF +G + + I+ D+ +G+ RGFGFV F D +D+ VLQ
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 66 DKHTIDGRPVEAKRALSREE 85
HTI+G E ++ALSR+E
Sbjct: 121 KYHTINGHNAEVRKALSRQE 140
Score = 41 (19.5 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYG 316
G ++ G YG G + GYG
Sbjct: 270 GGSRNMGGPYGGGNYGPGGSGGSGGYG 296
Score = 39 (18.8 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
G G + + GYG RG
Sbjct: 198 GPGGGNFGGSPGYGGGRG 215
Score = 38 (18.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSA 322
+GS G G +GY G G N G +
Sbjct: 182 YGSGRGFGDGYNGYGGGPG-GGNFGGS 207
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 264 (98.0 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT +LR +F + G ++ V MRD T RGFGFV ++ +D
Sbjct: 29 KLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNA 88
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTED-G 124
+ H +D R VE KRA+SRE+ K K+ TE+
Sbjct: 89 RPHKVD-RVVEPKRAVSREDSQRPGAHLT-----------MKKKEEEEEEEDDNNTEEYH 136
Query: 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++A
Sbjct: 137 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 196
Query: 185 LPK 187
L K
Sbjct: 197 LSK 199
Score = 158 (60.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T + R +FE G +TD V M D NT+ RGFGF+T+ T + VD
Sbjct: 28 QKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATN 87
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++ ++VE KRA+ ++
Sbjct: 88 ARPHKVD-RVVEPKRAVSRE 106
Score = 157 (60.3 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 16 DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQDKHTIDGRP 74
+T E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q HT++G
Sbjct: 131 NTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 190
Query: 75 VEAKRALSREE 85
E ++ALS++E
Sbjct: 191 CEVRKALSKQE 201
Score = 43 (20.2 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 297 GSQNPSGYGTSG--YDANAGYGANRGSAVS 324
GS+ GYG SG Y+ G+N G S
Sbjct: 246 GSRGGGGYGGSGDGYNRFGNDGSNFGGGGS 275
Score = 37 (18.1 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 295 SWGSQ-NPSGYGTSGYDANAGYGANRGS 321
++GS N SG G G+D + G G GS
Sbjct: 231 NFGSGGNFSGQG--GFDGSRGGGGYGGS 256
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 266 (98.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 63/182 (34%), Positives = 99/182 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TT +LR +F ++ ++ V MRD T R RGFGFV ++ +D +
Sbjct: 6 KLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNA 65
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DG VE KRA+SRE+ + K+I VGG+ E
Sbjct: 66 RPHKVDGSFVEPKRAVSREDSQSPGA-------------HLTVKEISVGGIKEDTEEHHL 112
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE+YG + + +M D+ + + + F F+TF+ D+VD ++ + +H +NG E AL
Sbjct: 113 RDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETV-AL 170
Query: 186 PK 187
K
Sbjct: 171 SK 172
Score = 174 (66.3 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T + R +FE + +TD V M D NT+R RGFGF+T+ T + VD +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G VE KRA+ ++
Sbjct: 65 ARPHKVDGSFVEPKRAVSRE 84
Score = 39 (18.8 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 285 ISAAPGALKSSWGSQNPSGYGTSGY-DANAGYGA 317
+++A + + GS N G G GY + + GYG+
Sbjct: 175 MASASSSQRGRSGSGNFGG-GGPGYCEGSRGYGS 207
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 264 (98.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 63/182 (34%), Positives = 99/182 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIG ++++TT+ +LR++ ++ ++ V+MRD R GFGFV +S +D +
Sbjct: 25 KLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR V RA+SRE+ + KKIFVGG+ E
Sbjct: 84 RPHKVDGRVV-GPRAVSREDS-------------VKPGTHLTVKKIFVGGVREDREEYNL 129
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+ YFE YG + + VM D+ + + RGF F+TF+ D VD + + +H +NG E+K+ L
Sbjct: 130 KDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVL 189
Query: 186 PK 187
K
Sbjct: 190 SK 191
Score = 177 (67.4 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
K+F+GG+ D E L+DYF ++G + + +M D+ +G+ RGF FV F D +D++ +Q
Sbjct: 114 KIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQ 173
Query: 66 DKHTIDGRPVEAKRALSRE 84
HTI+G E K+ LS++
Sbjct: 174 KYHTINGHNCEMKKVLSKQ 192
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGA 317
G S G N SG G GY + GYG+
Sbjct: 220 GGGNSGHGG-NFSGRG--GYSSRGGYGS 244
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 257 (95.5 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 65/183 (35%), Positives = 97/183 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR + + S +M D T RGF FV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 70
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +D R VE KR +SRE + KKIF GG+ E
Sbjct: 71 RPHKVDRRVVEPKRGVSREGSQRPGA-------------HLTVKKIFAGGIKEDTEERHL 117
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDN-VLQKVFHELNGKLVEVKRA 184
R YFEN G + + +M D ++ + RGF F+TF+ D+VD V+QK +H +NG EV++A
Sbjct: 118 RDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQK-YHTVNGHNREVRKA 176
Query: 185 LPK 187
L K
Sbjct: 177 LSK 179
Score = 178 (67.7 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F GGI DT E LRDYF G + + IM D ++G+ RGF FV F D +D+ V+Q
Sbjct: 102 KIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 161
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 162 KYHTVNGHNREVRKALSKQE 181
Score = 114 (45.2 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R + + + VM D NT+ RGF F+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMN 69
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++ ++VE KR + ++
Sbjct: 70 ARPHKVDRRVVEPKRGVSRE 89
Score = 41 (19.5 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 293 KSSWGSQNPSGYGTSGYDANAGYGANR 319
+SS GYG G+ +++ YG+ R
Sbjct: 275 RSSGPDGGGGGYG--GFSSSSNYGSGR 299
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 164 (62.8 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TT+ +LR +F ++G ++ V MRD RGFGFV ++ LD +
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 67 K-HTIDGRPVEAKRALSREE 85
+ H +DG VE KRA+SRE+
Sbjct: 74 RPHKVDGGVVEPKRAVSRED 93
Score = 158 (60.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T++ R +FE +G +TD V M D N + RGFGF+T+ T + +D +
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G +VE KRA+ ++
Sbjct: 74 RPHKVDGGVVEPKRAVSRE 92
Score = 149 (57.5 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
+ KKIFVG + ED +FE YG + + +M D+ + + RGF F+TF+ D+VD
Sbjct: 100 HLTVKKIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVD 154
Query: 165 NVLQKVFHELNGKLVEVKRAL 185
++ + +H +NG EV++AL
Sbjct: 155 TIVIQKYHTVNGHNCEVRKAL 175
Score = 148 (57.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+G + TEG +F ++G + + IM D+ +G+ RGF FV F DP +D V+Q
Sbjct: 105 KIFVG--VKEDTEG---HHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQ 159
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS +E
Sbjct: 160 KYHTVNGHNCEVRKALSNQE 179
Score = 51 (23.0 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 288 APGALKSSWGSQNPSGYGTSGYDANAGYGANRGS 321
+PG S G + GYGT G +GYG RGS
Sbjct: 191 SPGYSGGSRGYGSGQGYGTQG----SGYGG-RGS 219
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 207 (77.9 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA 172
Score = 169 (64.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 90 (36.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQR 148
KKIFVGGL P E+ R+YF +G V + + D T +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 243 (90.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 62/181 (34%), Positives = 92/181 (50%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++++T + +L +F G ++V+MR T RGFGFV L +
Sbjct: 11 KLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 69
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +D R VE KR +SR + + KKIFVGG+ E R
Sbjct: 70 PHKVDERVVEPKRDVSRGDSQRPHA-------------HLTVKKIFVGGIQEGTEEHHLR 116
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
FE YG + D+ +M D+ + + RGF F TF+ D+VD ++ + +H +NG EV+ AL
Sbjct: 117 NNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREALS 175
Query: 187 K 187
K
Sbjct: 176 K 176
Score = 148 (57.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI T E LR+ F ++G + + IM D+ + + RGF F F D +D+ V+Q
Sbjct: 100 KIFVGGIQEGTEEHHLRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 158
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E + ALS++E
Sbjct: 159 KYHTVNGHNCEVREALSKQE 178
Score = 50 (22.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDA--NAGYGANRG 320
G+ +G+Q SGYG SG YD+ N G G G
Sbjct: 207 GSGGQGYGNQG-SGYGGSGSYDSYNNCGSGGGFG 239
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 243 (90.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 62/181 (34%), Positives = 92/181 (50%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++++T + +L +F G ++V+MR T RGFGFV L +
Sbjct: 27 KLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 85
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +D R VE KR +SR + + KKIFVGG+ E R
Sbjct: 86 PHKVDERVVEPKRDVSRGDSQRPHA-------------HLTVKKIFVGGIQEGTEEHHLR 132
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
FE YG + D+ +M D+ + + RGF F TF+ D+VD ++ + +H +NG EV+ AL
Sbjct: 133 NNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREALS 191
Query: 187 K 187
K
Sbjct: 192 K 192
Score = 148 (57.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI T E LR+ F ++G + + IM D+ + + RGF F F D +D+ V+Q
Sbjct: 116 KIFVGGIQEGTEEHHLRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 174
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E + ALS++E
Sbjct: 175 KYHTVNGHNCEVREALSKQE 194
Score = 50 (22.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDA--NAGYGANRG 320
G+ +G+Q SGYG SG YD+ N G G G
Sbjct: 207 GSGGQGYGNQG-SGYGGSGSYDSYNNCGSGGGFG 239
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 177 (67.4 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
+EGK+F+G ++W + L++YFT+FG+V I D TGR RGFGFV+ D + ++++
Sbjct: 70 EEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Query: 64 LQDK-HTIDGRPVEAKRA 80
L K H ++G ++ ++A
Sbjct: 130 LDQKEHRLNGDVIDPEKA 147
Score = 144 (55.7 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 42/121 (34%), Positives = 58/121 (47%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF-ETEDAVDNVL 167
KKIFVG L P TE R + E +G + + + D + + RGF FITF E E+ V VL
Sbjct: 156 KKIFVG-LNPEATEKN-RDFGE-FGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 168 QKVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGNRYMQTQSNA 227
+K FH ++G+ E+K A PK+ N S G N Y ++Q
Sbjct: 213 EKKFHTISGRKCEIKVAQPKEDYQQQQCGSGGRGNRNGGNRGSGSGGGSTN-YRKSQQRC 271
Query: 228 G 228
G
Sbjct: 272 G 272
Score = 138 (53.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVG L + + + YF +G V D + D NT R RGFGF+ + +V+ +L +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 170 VFHELNGKLVEVKRA 184
H LNG +++ ++A
Sbjct: 133 KEHRLNGDVIDPEKA 147
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 240 (89.5 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 62/184 (33%), Positives = 96/184 (52%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F R+G + V+ R+ R RGFG V P L++V
Sbjct: 14 KLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVV----PRHLEEVAAA 69
Query: 67 KHTIDGRPVEA---KRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTED 123
++ R E +RA SRE+ + KKIFVGG+ E
Sbjct: 70 RNPGPTRWTEESWKQRAASREDSQRPGA-------------HLTVKKIFVGGIKGDAEEH 116
Query: 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183
R FE G + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++
Sbjct: 117 HLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCEVRK 176
Query: 184 ALPK 187
AL K
Sbjct: 177 ALSK 180
Score = 168 (64.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI D E LRD F + G + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 103 KIFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 162
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 163 KYHTVNGHGCEVRKALSKQE 182
Score = 108 (43.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161
+K+F+GGL T++ R +FE +G + D VV + N +R RGFG + E+
Sbjct: 13 RKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVPRHLEE 65
Score = 51 (23.0 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D + G+G +R +
Sbjct: 227 GSRGGGGYGGSGDDCH-GFGNDRSN 250
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 233 (87.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 52/161 (32%), Positives = 86/161 (53%)
Query: 28 RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQ 86
++G ++ V+MRD T RGF F+ ++ +D + + H +D R VE K+A+SRE+
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 87 HXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNT 146
+ KKIFVGG+ + R YFE+YG + + +M D+ +
Sbjct: 62 QRPGA-------------HLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGS 108
Query: 147 QRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
R F F+TF+ D+VD ++ + +H +NG EV++AL K
Sbjct: 109 GNKRSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLK 149
Score = 165 (63.1 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT + LRDYF +G + + IM D+ +G R F FV F +D+ V+Q
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++AL ++E
Sbjct: 132 KYHTVNGHNCEVRKALLKQE 151
Score = 112 (44.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 132 YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188
+G +TD VVM D NT+ RGF F+T+ T + VD + H+++ ++VE+K+A+ ++
Sbjct: 3 WGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSRE 59
Score = 49 (22.3 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 299 QNPSGYGTSGYDANAGYGA 317
QN GYG+S +++ YG+
Sbjct: 307 QNQGGYGSSSSSSSSSYGS 325
Score = 39 (18.8 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 299 QNPSGYGTSGYDANAGY-GANRGSAVSPLGH 328
Q+ SG G +G+ + GY G G + G+
Sbjct: 191 QSGSGDGCNGFGNDGGYRGGGPGYSGGSRGY 221
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 59/138 (42%), Positives = 84/138 (60%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S K+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 61 DQVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP- 118
D+VL Q H +D + ++ K A R Q +TKKIFVGGL
Sbjct: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSAN 116
Query: 119 TLTEDGFRQYFENYGHVT 136
T+ ED +QYFE +G V+
Sbjct: 117 TVVED-VKQYFEQFGKVS 133
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
+ K+F+GGL + D R YF +G + + +VM D T+R RGFGF+TF +VD VL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 168 QKVFHELNGKLVEVKRALPK 187
+ HEL+ K ++ K A P+
Sbjct: 76 GQPHHELDSKTIDPKVAFPR 95
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 62/182 (34%), Positives = 94/182 (51%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-D 66
+ IG T+E LR +F FG ++ V++ + T R R FGFV +S+ D +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 67 KHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFR 126
H +DG VE KRA+SRE+ + K KK+FVGGL + E
Sbjct: 69 PHAVDGNTVELKRAVSREDS-------------ARPGAHAKVKKLFVGGLKGDVAEGDLI 115
Query: 127 QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186
++F +G V ++ D+ + + RGFGF+ F++ DA D FH + G VEVK+A+P
Sbjct: 116 EHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVP 175
Query: 187 KD 188
K+
Sbjct: 176 KE 177
Score = 169 (64.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLF+GG+ D EG L ++F++FG V + I+ DK +G+ RGFGFV F D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H I G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 58/134 (43%), Positives = 77/134 (57%)
Query: 56 DPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVG 114
DP+ + VL + HT+DGR ++ K R Q K+ KIFVG
Sbjct: 3 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS-KSNKIFVG 61
Query: 115 GLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHEL 174
G+P E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++
Sbjct: 62 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 121
Query: 175 NGKLVEVKRALPKD 188
GK VEVKRA P+D
Sbjct: 122 MGKKVEVKRAEPRD 135
Score = 177 (67.4 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 53 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 112
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQ 86
+ H I G+ VE KRA R+ +
Sbjct: 113 AVNMHFHDIMGKKVEVKRAEPRDSK 137
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 155 (59.6 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ KK+FVGGLP +E R +FE +G V D+ +D+ T+ R F FI FE E++ D
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
Query: 167 LQKVFHELNGKLVEVKRALPK 187
+ + +VK+A+P+
Sbjct: 168 SSQTKQTFGTRECDVKKAVPQ 188
Score = 150 (57.9 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
+++ K+F+GGI+ + L +FT++G+V+Q + D+T GR RGF FV F+
Sbjct: 26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKL 85
Query: 63 VLQDKH-TIDGRPVEAKRALSREEQ 86
L + TI G+ VE K A SRE +
Sbjct: 86 ALAAREQTIKGKSVEVKPAKSRENK 110
Score = 142 (55.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGG+ P + + +F YG V V YD+ R RGF F+ F T + L
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 169 KVFHELNGKLVEVKRALPKD 188
+ GK VEVK A ++
Sbjct: 89 AREQTIKGKSVEVKPAKSRE 108
Score = 119 (46.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-Q 65
K+F+GG+ D +E LR +F +FG V + DK T R F F+VF + D+ Q
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 66 DKHTIDGRPVEAKRAL 81
K T R + K+A+
Sbjct: 171 TKQTFGTRECDVKKAV 186
Score = 47 (21.6 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 285 ISAAP-GALKSSWGSQNPSGY-GTSGYDANAGYGANRG 320
I A P GA ++WG +GY G G + G+++G
Sbjct: 224 IGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNSGSSQG 261
Score = 39 (18.8 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGSAVSP 325
G Q+ +G SG+D GA +G+ P
Sbjct: 265 GYQSFAG-NNSGFDYQQAQGARQGNNGQP 292
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 228 (85.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 57/151 (37%), Positives = 78/151 (51%)
Query: 38 MRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXX 96
MRD T R RGFGFV +S +D + + H R VE KRA+SRE+
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSREDS---------- 47
Query: 97 XXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFIT 156
+ KKIFVGG+ E R FENYG + + VM D+ + + RG F+T
Sbjct: 48 ---VKPGAHLTVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVT 104
Query: 157 FETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
F+ D VD ++ + +H +NG EVK+AL K
Sbjct: 105 FDDHDTVDKIVVQKYHTINGHNCEVKKALSK 135
Score = 181 (68.8 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI DT E LRD F +G + + +M D+ +G+ RG FV F D +D+++
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQ 117
Query: 67 K-HTIDGRPVEAKRALSREE 85
K HTI+G E K+ALS++E
Sbjct: 118 KYHTINGHNCEVKKALSKQE 137
Score = 51 (23.0 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 289 PGALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
PG + G G G GY+ +G N G
Sbjct: 225 PGGYGNQGGGYGGGGGGYDGYNEGGNFGGNYG 256
Score = 51 (23.0 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 289 PG-ALKSSWGSQNPSGYGTSGYDANAGYGANRG 320
PG + + +G P GYG G GYG G
Sbjct: 212 PGYSSRGGYGGGGPGGYGNQG----GGYGGGGG 240
Score = 46 (21.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
GS+ G G GY+ G G N G
Sbjct: 186 GSRGSYGGGDGGYNGFGGGGGNYG 209
Score = 46 (21.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 290 GALKSSWGSQNPSGYG--TSGYDANAGYGANRGS 321
G +S++G +G +SG GYG+ GS
Sbjct: 269 GQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 302
Score = 45 (20.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANR 319
S GS GYG+ G + GYG R
Sbjct: 287 SSGSPYGGGYGSGG--GSGGYGRRR 309
Score = 37 (18.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG G
Sbjct: 179 GYGGGGGGSRGSYGGGDG 196
Score = 37 (18.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G N G G Y GY + G
Sbjct: 196 GGYNGFGGGGGNYGGGPGYSSRGG 219
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 164 (62.8 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT R +F + G ++ V+ RD T R RGFGFV ++ +D +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 67 K-HTIDGRPVEAKRALSREE 85
+ H +D R VE RA+SRE+
Sbjct: 61 RPHKVDARVVEPNRAVSRED 80
Score = 160 (61.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T R +FE G +TD VV D NT+R RGFGF+T+ T + VD +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++ ++VE RA+ ++
Sbjct: 61 RPHKVDARVVEPNRAVSRE 79
Score = 132 (51.5 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 FIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKH 68
F+ GI DT E L++ + ++G + + IM D+ G+ R F FV F D + + VLQ H
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQKYH 145
Query: 69 TIDGRPVEAKRALSRE 84
+ G E ++ALS++
Sbjct: 146 NVHGYNCEVRKALSKQ 161
Score = 120 (47.3 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 112 FVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171
FV G+ E + +E YG + + +M D+ + R F F+TF D + VLQK +
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQK-Y 144
Query: 172 HELNGKLVEVKRALPK 187
H ++G EV++AL K
Sbjct: 145 HNVHGYNCEVRKALSK 160
Score = 46 (21.3 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDANAGYGANRG 320
G+ ++G Q SGYG SG YD G +RG
Sbjct: 173 GSGGQNYGKQG-SGYGGSGSYDTYNN-GGSRG 202
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 61/162 (37%), Positives = 94/162 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++ ++ V+MRD T R RGFGFV +S +D +
Sbjct: 14 KLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMCA 71
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DG VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 72 RPHKVDGHVVEPKRAISREDS-------------VKPGAHLMVKKIFVGGIKEDTEEYNL 118
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
R YFE YG++ + V+ D+ + + RGF F+TF+ D VD ++
Sbjct: 119 RDYFE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++F+ + +TD VVM D T+R RGFGF+ + + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMC 70
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G +VE KRA+ ++
Sbjct: 71 ARPHKVDGHVVEPKRAISRE 90
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 160 (61.4 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
T KIF+ G+ E R YFE Y + + +M D+ +++ R F F+TF+ D+VD +
Sbjct: 102 TVKIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIF 161
Query: 168 QKVFHELNGKLVEVKRALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDG 217
+ +H +NG EV++AL K N G G
Sbjct: 162 IQKYHTVNGHNCEVRKALSKQEMASASSSQRGESGSGNYNNGGDRGSFGG 211
Score = 158 (60.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
K+FI GI DT E LRDYF ++ + + IM D+ + + R F FV F + +D++ +Q
Sbjct: 104 KIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQ 163
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 164 KYHTVNGHNCEVRKALSKQE 183
Score = 140 (54.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R +FE + + VVM D NT+R RG GF T+ T + +D +
Sbjct: 19 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 78
Query: 169 KVFHELNGKLV 179
H+++G++V
Sbjct: 79 ARPHKVDGRVV 89
Score = 136 (52.9 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TTE +LR +F ++ + V+MRD T R RG GF ++ +D +
Sbjct: 20 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 79
Query: 67 K-HTIDGRPV 75
+ H +DGR V
Sbjct: 80 RPHKVDGRVV 89
Score = 38 (18.4 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDANAGYGANRGSAVSPL 326
G + S+G + S +G G Y+ Y N+ S P+
Sbjct: 203 GGDRGSFGGGSGSNFGDGGSYNDFGNYN-NQSSNFRPM 239
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 196 (74.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D+V+ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HTIDGRPVEAKRA 80
H ++G+ ++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 164 (62.8 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170
+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 171 FHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 79 (32.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHV 135
KKIFVGGL P E+ R+YF +G V
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEV 110
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 59/162 (36%), Positives = 89/162 (54%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-Q 65
KLFIGG++++ T+ +LR++F ++G ++ V+MRD T R R F FV +S +D +
Sbjct: 14 KLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCA 73
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
H +DGR VE KRA+SRE+ + KKIFVGG+ E
Sbjct: 74 QPHNVDGRVVEPKRAVSREDS-------------VKPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
R YFE YG + + VM D+ + + R F+TF+ D VD ++
Sbjct: 121 RDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
Score = 170 (64.9 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD VVM D T+R R F F+T+ VD +
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
H ++G++VE KRA+ ++
Sbjct: 73 AQPHNVDGRVVEPKRAVSRE 92
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 230 (86.0 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 52/147 (35%), Positives = 78/147 (53%)
Query: 43 TGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXX 101
T R RGFGFV + +D + + H +DGR VE KRA+SRE+
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDA---------- 50
Query: 102 XXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161
+ KKIFVG + E R YFE YG + + +M D+ +++ RGF F+TF+ D
Sbjct: 51 ---HLTVKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHD 107
Query: 162 AVDNVLQKVFHELNGK-LVEVKRALPK 187
+VD ++ + +H +NG EV++ L K
Sbjct: 108 SVDKIVTQKYHTVNGHHKCEVRKPLSK 134
Score = 164 (62.8 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+G I DT E LRDYF ++G + + IM D+ + + RGF FV F D +D+++
Sbjct: 56 KIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQ 115
Query: 67 K-HTIDGR-PVEAKRALSREE 85
K HT++G E ++ LS++E
Sbjct: 116 KYHTVNGHHKCEVRKPLSKQE 136
Score = 40 (19.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANR 319
GA +SS + GYG G +++ YG+ R
Sbjct: 225 GA-RSSGPNDGGGGYG--GSSSSSSYGSGR 251
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 65/215 (30%), Positives = 104/215 (48%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
+LFI G+ ++TT +LR +F ++G + V+M D T R FGFV+++ +D +
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 67 K-HTID--GRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTED 123
+ H ++ G+P K A+SRE+ + KK FVGG+ E
Sbjct: 75 RPHKVNRIGKP---KMAVSREDSQRPGA-------------HLTGKKTFVGGIKEDTEEH 118
Query: 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183
R YFE YG + + +M DQ + + RGF F+T + D++D ++ + H +NG EV+R
Sbjct: 119 HLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRR 178
Query: 184 ALPKDXXXXXXXXXXXXXXXXXXNTSSFDGRLDGN 218
AL K + +FDG GN
Sbjct: 179 ALSKQEMASASTSRRSK------GSGNFDGGCGGN 207
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 151 (58.2 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 108 TKKIF-VGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
T KIF V G+ E R YFE Y + + +M D+ +++ R F F+TF+ D+VD +
Sbjct: 98 TVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 157
Query: 167 LQKVFHELNGKLVEVKRALPK 187
+ +H +NG EV++AL K
Sbjct: 158 FIQKYHTVNGHNCEVRKALSK 178
Score = 149 (57.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 7 KLFI-GGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-L 64
K+FI GI DT E LRDYF ++ + + IM D+ + + R F FV F + +D++ +
Sbjct: 100 KIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFI 159
Query: 65 QDKHTIDGRPVEAKRALSREE 85
Q HT++G E ++ALS++E
Sbjct: 160 QKYHTVNGHNCEVRKALSKQE 180
Score = 140 (54.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R +FE + + VVM D NT+R RG GF T+ T + +D +
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 169 KVFHELNGKLV 179
H+++G++V
Sbjct: 75 ARPHKVDGRVV 85
Score = 136 (52.9 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+++ TTE +LR +F ++ + V+MRD T R RG GF ++ +D +
Sbjct: 16 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 75
Query: 67 K-HTIDGRPV 75
+ H +DGR V
Sbjct: 76 RPHKVDGRVV 85
Score = 49 (22.3 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 300 NPSGYGTSG-YDANAGYGANRGS 321
N SGYG SG YD+ G +RGS
Sbjct: 220 NGSGYGGSGSYDSYNN-GGDRGS 241
Score = 38 (18.4 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 290 GALKSSWGSQNPSGYGTSG-YDANAGYGANRGSAVSPL 326
G + S+G + S +G G Y+ Y N+ S P+
Sbjct: 236 GGDRGSFGGGSGSNFGDGGSYNDFGNYN-NQSSNFRPM 272
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 55/134 (41%), Positives = 79/134 (58%)
Query: 56 DPSVLDQVL-QDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVG 114
D + +D+VL Q +H +D + ++ K A R Q +TKKIFVG
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVG 46
Query: 115 GLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHEL 174
GL T + +QYFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+
Sbjct: 47 GLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 106
Query: 175 NGKLVEVKRALPKD 188
N K+VE K+A PK+
Sbjct: 107 NNKMVECKKAQPKE 120
Score = 167 (63.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +TT ++ YF +FG V ++M DKTT R RGFGFV F ++++V +
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 102 HFHEINNKMVECKKAQPKE 120
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 225 (84.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 56/179 (31%), Positives = 90/179 (50%)
Query: 10 IGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-H 68
I G++++TT+ +L+ + S ++MRD T R RGFGFV ++ +D + + H
Sbjct: 18 IRGLSFETTDESLKT----MENTSNFLVMRDPNTKRSRGFGFVPYTTVEEVDATMNARPH 73
Query: 69 TIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQY 128
+ GR V KR E+ KK+ VGG+ E R Y
Sbjct: 74 KVGGRVVGPKRVSCGMEKSQRPGAPLTM------------KKVLVGGINEDTEEHHLRDY 121
Query: 129 FENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
FE YG + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL K
Sbjct: 122 FEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 180
Score = 168 (64.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+ +GGI DT E LRDYF +G + IM D+ + + RGF FV F D +D+ V+Q
Sbjct: 103 KVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQ 162
Query: 66 DKHTIDGRPVEAKRALSREEQ 86
HT++G E ++ALS++E+
Sbjct: 163 KYHTVNGHNCEVRKALSKQER 183
Score = 40 (19.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGANR--GSAVSPLGH 328
+S + SG G G G+G+N GS + GH
Sbjct: 186 ASSSQRGRSGSGNFGGGRGGGFGSNDNFGSGGNFCGH 222
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 57 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 117 KYHTVNGHNCEVRKALSKQE 136
Score = 182 (69.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
+ KKIFVGG+ E R YFE YG + + +M D+ + + RGF F+TF+ D+VD
Sbjct: 52 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 111
Query: 165 NVLQKVFHELNGKLVEVKRALPK 187
++ + +H +NG EV++AL K
Sbjct: 112 KIVIQKYHTVNGHNCEVRKALSK 134
Score = 76 (31.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVV 36
KLFIGG++++TT+ +LR +F ++G ++ V
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCV 44
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 251 (93.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 55/153 (35%), Positives = 89/153 (58%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ-VVIMRDKTTGRPRGFGFVVFSDPSVL 60
+S GK+F+GG+ ++ L+DYF+ FG+V + +VI + + RGFGFV F DPSV+
Sbjct: 102 KSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVI 161
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL 120
D+V+ H+I+G+ VE +RA+ +EE K +K+FVGGLP +
Sbjct: 162 DEVILINHSIEGKNVEIRRAIPKEEMTEEP----------------KKQKLFVGGLPKHI 205
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQN-TQRPRGF 152
T D F YF +G +++ ++ ++N T + GF
Sbjct: 206 TSDDFNNYFSEFGEISEYNLLTEKNGTIKGFGF 238
Score = 168 (64.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTD-VVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KIFVGGL T + + + YF N+G V + +V+ + + RGFGF+TF +D V+
Sbjct: 107 KIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVIL 166
Query: 169 KVFHELNGKLVEVKRALPKD 188
+ H + GK VE++RA+PK+
Sbjct: 167 -INHSIEGKNVEIRRAIPKE 185
Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
K +K+FVGGLP +T D F YF +G +++ ++ ++N +GFGFI F+ E + +
Sbjct: 192 KKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKNGTI-KGFGFICFKDESVNEII 250
Query: 167 LQKVFHELNGKLVEVKRA 184
L + H + GK V+++ A
Sbjct: 251 LNEQQHIILGKRVDIRIA 268
Score = 136 (52.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E + KLF+GG+ T +YF+ FG++S+ ++ +K G +GFGF+ F D SV +
Sbjct: 190 EPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICFKDESVNE 248
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQ 86
+L ++ H I G+ V+ + A S+ ++
Sbjct: 249 IILNEQQHIILGKRVDIRIADSQNKR 274
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 107 KTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDN 165
+TKKIFVGGL T+ ED +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+
Sbjct: 47 RTKKIFVGGLSANTVVED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 166 VLQKVFHELNGKLVEVKRALPKD 188
V + FHE+N K+VE K+A PK+
Sbjct: 106 VCEIHFHEINNKMVECKKAQPKE 128
Score = 164 (62.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +T ++ YF +FG V ++M DKTT R RGFGFV F + V+++V +
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 110 HFHEINNKMVECKKAQPKE 128
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 202 (76.2 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 44/120 (36%), Positives = 65/120 (54%)
Query: 68 HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQ 127
H +DGR VE KRA+SRE+ + KKIFVGG+ E R
Sbjct: 41 HKVDGRVVEPKRAVSREDSQRPGA-------------HLTVKKIFVGGIKEDTEEHHLRD 87
Query: 128 YFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
YFE YG + + +M + + + RGF F+TF+ D+VD ++ + +H +NG EV++AL K
Sbjct: 88 YFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 147
Score = 184 (69.8 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + IM + +G+ RGF FV F D +D+ V+Q
Sbjct: 70 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQ 129
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT++G E ++ALS++E
Sbjct: 130 KYHTVNGHNCEVRKALSKQE 149
Score = 49 (22.3 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 194 GSRGGGGYGGSG-DGYNGFG-NDGS 216
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 60/183 (32%), Positives = 95/183 (51%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++T++ +LR++F ++ ++ V+M D T R R FGFV +S +D +
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +DG VE KR RE+ KKIF+GG+ E
Sbjct: 73 RPHKVDGCVVEPKRPF-REDS-------------VKPVVCLLAKKIFIGGIKEDTEEHNL 118
Query: 126 RQYFENYGHVTDVVVMY-DQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184
R YFE YG + + +M D+ + RGF F+TF+ VD ++ + H +N +VK+A
Sbjct: 119 RDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKKA 178
Query: 185 LPK 187
K
Sbjct: 179 PSK 181
Score = 172 (65.6 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMR-DKTTGRPRGFGFVVFSDPSVLDQVLQ 65
K+FIGGI DT E LRDYF ++G + + IM D+ +G RGF FV F D +D+++
Sbjct: 103 KIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVV 162
Query: 66 DK-HTIDGRPVEAKRALSREE 85
K HTI+ + K+A S++E
Sbjct: 163 QKCHTINRHNCDVKKAPSKQE 183
Score = 137 (53.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL ++D R++FE + +T VVM D T+R R FGF+T+ VD +
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++G +VE KR +D
Sbjct: 73 RPHKVDGCVVEPKRPFRED 91
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 55/175 (31%), Positives = 91/175 (52%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KL IGG+ + TT +LR++F ++G + V+MRD T R R GFV ++ +D +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ +DGR V+ KRA+SRE+ KKIF GG+ E
Sbjct: 84 RPQKMDGRLVKPKRAVSREDSQRPGTQLT-------------VKKIFEGGIKEDTEEHNV 130
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
R YFE+YG + + +M D+++ + + F + + D+VD + + +H +NG V+
Sbjct: 131 RDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYHTVNGTTVK 184
Score = 156 (60.0 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+ +GGL T + R +FE +G TD VVM D NT+R R GF+T+ T + VD +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 170 VFHELNGKLVEVKRALPKD 188
+++G+LV+ KRA+ ++
Sbjct: 84 RPQKMDGRLVKPKRAVSRE 102
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 213 (80.0 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 62/180 (34%), Positives = 92/180 (51%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV-LQ 65
KLFIGG++ TT G +Y+ ++G + VVI RD T+ + R F + F +D
Sbjct: 17 KLFIGGLSSQTT-GKGLNYYKQWGKLDCVVI-RDPTSQKSR-FILLHFHPWLRVDAARAA 73
Query: 66 DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+IDG+ V K A+ RE+ KK+F+GGL E
Sbjct: 74 TPRSIDGKMVAPKHAVPREDYGKPGPLVT-------------VKKLFIGGLTEDTEEHHL 120
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE Y + + ++ D+ + + RGFGF+TF+ D VD +LQK H +NG EV++AL
Sbjct: 121 RDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQKN-HTVNGHHAEVRKAL 179
Score = 185 (70.2 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ DT E LRDYF ++ + + I+ D+ + + RGFGFV F D +D++LQ
Sbjct: 105 KLFIGGLTEDTEEHHLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQK 164
Query: 67 KHTIDGRPVEAKRALSREE 85
HT++G E ++ALS+ +
Sbjct: 165 NHTVNGHHAEVRKALSQSK 183
Score = 38 (18.4 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRG 320
G P GY ++G++ G + G
Sbjct: 252 GYGGPGGYSSTGHEYGNQDGGSEG 275
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 59/172 (34%), Positives = 89/172 (51%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR + + S +M D T RGF FV ++ +D +
Sbjct: 14 KLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +D R VE KR +SRE + KKIF GG+ E
Sbjct: 70 RPHKVDRRVVEPKRGVSREGSQRPGA-------------HLTVKKIFAGGIKEDTEERHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDN-VLQKVFHELNG 176
R YFE G + + +M D ++ + RGF F+TF+ D+VD V+QK +H +NG
Sbjct: 117 RDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQK-YHTVNG 167
Score = 157 (60.3 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F GGI DT E LRDYF + G + + IM D ++G+ RGF FV F D +D+ V+Q
Sbjct: 101 KIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 160
Query: 66 DKHTIDGRPVEAKRA 80
HT++G E R+
Sbjct: 161 KYHTVNGHNRERGRS 175
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R + + + VM D NT+ RGF F+T+ T + VD +
Sbjct: 13 RKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMN 68
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++ ++VE KR + ++
Sbjct: 69 ARPHKVDRRVVEPKRGVSRE 88
>UNIPROTKB|J9P0Y4 [details] [associations]
symbol:J9P0Y4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03013644
Ensembl:ENSCAFT00000045249 OMA:SEEGYNG Uniprot:J9P0Y4
Length = 223
Score = 163 (62.4 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQV-------VIMRDKTTGRPRGFGFVVFSDPSV 59
KLF GG++++TT+ +LR + ++G ++ V V++RD T R R FG+ +
Sbjct: 3 KLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGE--- 59
Query: 60 LDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPP 118
++ ++ K H +DG VE KR +S+E + +KIFVGG+
Sbjct: 60 VEAIMNGKPHKVDGIAVELKRPISKESSQRPGA-------------HLTLRKIFVGGIKE 106
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYD 143
E R YFE YG + +++ YD
Sbjct: 107 DAEEHHLRDYFEQYGKI-EMIDDYD 130
Score = 118 (46.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVT-------DVVVMYDQNTQRPRGFGFITFETED 161
+K+F GGL T++ R + E +G +T D VV+ D NT+R R FG+ T +
Sbjct: 2 QKLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGEVE 61
Query: 162 AVDNVLQKVFHELNGKLVEVKRALPKD 188
A+ N H+++G VE+KR + K+
Sbjct: 62 AIMNGKP---HKVDGIAVELKRPISKE 85
Score = 59 (25.8 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 161 DAVDNVLQKVFHELNGKLVEVKRALPK 187
D+VD ++ + +H +NG EV++AL K
Sbjct: 130 DSVDKIIIQKYHTVNGHDSEVRKALSK 156
Score = 44 (20.5 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 294 SSWGSQNPSGYGTSGYDANAGYGAN 318
+S + PSG G G +G+G N
Sbjct: 162 ASSSQRGPSGCGNFGGGHGSGFGGN 186
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 196 (74.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREE 85
+ H +DGR VE KRA+SRE+
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 193 (73.0 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 35/80 (43%), Positives = 56/80 (70%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 49 (22.3 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 297 GSQNPSGYGTSGYDANAGYGANRGS 321
GS+ GYG SG D G+G N GS
Sbjct: 114 GSRGGGGYGGSG-DGYNGFG-NDGS 136
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 60/184 (32%), Positives = 97/184 (52%)
Query: 7 KLFIGGIAWDTT-EG-TLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64
KLF+GG++++ T E +L +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAM 74
Query: 65 QDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTED 123
+ H + GR VE KRA S++ Q + KKIFVGG+ E
Sbjct: 75 NARPHKVGGRAVEPKRAGSKDSQRPGA--------------HLTMKKIFVGGVKEDTEEH 120
Query: 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183
R Y E G + D+ + + R F F+TF+ ++VD ++ + + +NG EV++
Sbjct: 121 RLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFD--NSVDKIVIQKYSTVNGHNCEVRK 177
Query: 184 ALPK 187
AL K
Sbjct: 178 ALSK 181
Score = 173 (66.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 109 KKIFVGGLP--PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+K+FVGGL TL +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ H++ G+ VE KRA KD
Sbjct: 74 MNARPHKVGGRAVEPKRAGSKD 95
Score = 137 (53.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ DT E LRDY + G I D+ +G+ R F FV F D SV V+Q
Sbjct: 107 KIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTF-DNSVDKIVIQK 164
Query: 67 KHTIDGRPVEAKRALSREE 85
T++G E ++ALS++E
Sbjct: 165 YSTVNGHNCEVRKALSKQE 183
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 199 (75.1 bits), Expect = 6.2e-19, Sum P(2) = 6.2e-19
Identities = 47/133 (35%), Positives = 67/133 (50%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
L + G+ W T+E L+DYF FG+V V + RD TG +GFGFV F D +V+ +
Sbjct: 112 LIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQR 171
Query: 68 HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQ 127
H IDGR + K S++ +++K+FVG +T D RQ
Sbjct: 172 HMIDGRWCDCKLPNSKQ----------------GIDEPMRSRKVFVGRCTEDMTADELRQ 215
Query: 128 YFENYGHVTDVVV 140
+F YG VTDV +
Sbjct: 216 FFMQYGEVTDVFI 228
Score = 100 (40.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
KT + V GLP +E + YF +G V V V D T +GFGF+ F + V
Sbjct: 108 KTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKV 167
Query: 167 LQKVFHELNGKLVEVK 182
+ + H ++G+ + K
Sbjct: 168 MTQR-HMIDGRWCDCK 182
Score = 54 (24.1 bits), Expect = 6.2e-19, Sum P(2) = 6.2e-19
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 285 ISAAPGALKSSWG------SQNPSGYGTSGYDANAGYGANRGSA 322
++AA AL+SSWG QN SG TSG + +G ++R A
Sbjct: 323 MAAAQAALQSSWGMMGMLAQQNQSG--TSG-TSTSGTSSSRDQA 363
Score = 45 (20.9 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 296 WGSQNPSGYGTSGYDANAGYGANRGSAVSPLG 327
WG+ + SG ++G+ N+ +G++ S S G
Sbjct: 382 WGTGSNSGAASAGF--NSSFGSSMESKSSGWG 411
Score = 44 (20.5 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 295 SWGSQNPSGYGTSGYDANAGYGANRGSA 322
++ S N S YG+S G G+N G+A
Sbjct: 365 TYSSAN-SNYGSSSAALGWGTGSNSGAA 391
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K F+GG+P +T +YFE YG V VV+ D T+R RGF F+T + + +L+
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 170 VFHELNGKLVEVK 182
HELNGK V+V+
Sbjct: 175 T-HELNGKRVDVR 186
Score = 152 (58.6 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+KIFVGGL T+D YF +G + DVV + ++ R R FGF+ F E++V VL+
Sbjct: 198 RKIFVGGLNYYWTKDTLESYFSTFGEI-DVVQIVLDSSGRSRCFGFVVFSNENSVAKVLK 256
Query: 169 KVFHELNGKLVEVKRALPK 187
H++ K+VEV++A PK
Sbjct: 257 HKRHKIYDKMVEVRKAEPK 275
Score = 147 (56.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 3 SD-EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
SD + K+F+GG+ + T+ TL YF+ FG++ V I+ D ++GR R FGFVVFS+ + +
Sbjct: 194 SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVA 252
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H I + VE ++A
Sbjct: 253 KVLKHKRHKIYDKMVEVRKA 272
Score = 134 (52.2 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K FIGGI T + +YF ++G V VVI +D T R RGF FV + +++L+D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 67 KHTIDGRPVEAK 78
H ++G+ V+ +
Sbjct: 175 THELNGKRVDVR 186
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K F+GG+P +T +YFE YG V VV+ D T+R RGF F+T + + +L+
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 170 VFHELNGKLVEVK 182
HELNGK V+V+
Sbjct: 175 T-HELNGKRVDVR 186
Score = 152 (58.6 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+KIFVGGL T+D YF +G + DVV + ++ R R FGF+ F E++V VL+
Sbjct: 198 RKIFVGGLNYYWTKDTLESYFSTFGEI-DVVQIVLDSSGRSRCFGFVVFSNENSVAKVLK 256
Query: 169 KVFHELNGKLVEVKRALPK 187
H++ K+VEV++A PK
Sbjct: 257 HKRHKIYDKMVEVRKAEPK 275
Score = 147 (56.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 3 SD-EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
SD + K+F+GG+ + T+ TL YF+ FG++ V I+ D ++GR R FGFVVFS+ + +
Sbjct: 194 SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVA 252
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+VL+ K H I + VE ++A
Sbjct: 253 KVLKHKRHKIYDKMVEVRKA 272
Score = 134 (52.2 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K FIGGI T + +YF ++G V VVI +D T R RGF FV + +++L+D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 67 KHTIDGRPVEAK 78
H ++G+ V+ +
Sbjct: 175 THELNGKRVDVR 186
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 195 (73.7 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 78 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 137
Query: 62 QVLQDK----HTIDGRPVE-AKRALSREEQ 86
+V++ K + ++ P E AKR ++++
Sbjct: 138 KVIEIKQRREYGLECGPKEIAKRQKDKKKK 167
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
K+FVGGL ++ + YF +G V D + D NT R RGFGFI F+ +V+ V++
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVIE 141
Score = 54 (24.1 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 154 FITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188
FI F E+ V L K+ ++G E+K A PK+
Sbjct: 213 FIDFSVEEPVRASLVKLLVVISGSRCEIKVAQPKE 247
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 160 (61.4 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KK+FVGGL P +E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+
Sbjct: 29 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 88
Query: 169 KVFHELNGKLVEVKRALPKD 188
+H++ E+K A PK+
Sbjct: 89 SRYHQIGSGKCEIKVAQPKE 108
Score = 131 (51.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT+E +++YF FG++ + + D T RGF F+ ++D + ++L+
Sbjct: 30 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 89
Query: 67 K-HTIDGRPVEAKRALSRE 84
+ H I E K A +E
Sbjct: 90 RYHQIGSGKCEIKVAQPKE 108
Score = 52 (23.4 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 290 GALKSSWGS-QNPSGYGT---SGYD-ANAGYG 316
G S++G QN SGYG +GY+ N GYG
Sbjct: 155 GNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYG 186
Score = 40 (19.1 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 63 VLQDK-HTIDGRPVEAKRA 80
VL+ K H +DG+ ++ KRA
Sbjct: 1 VLELKEHKLDGKLIDPKRA 19
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 169 (64.5 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 87
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 88 KKYHNVGLSKCEIKVAMSKE 107
Score = 144 (55.7 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 29 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 88
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 89 KYHNVGLSKCEIKVAMSKEQ 108
Score = 40 (19.1 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 296 WGSQNPSGYGT---SGYDANAGYG 316
+ SQ GYG +GY+ GYG
Sbjct: 153 YNSQGYGGYGGYDYTGYNNYYGYG 176
Score = 39 (18.8 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 65 QDKHTIDGRPVEAKRA 80
Q +H ++G+ ++ KRA
Sbjct: 3 QKEHKLNGKVIDPKRA 18
Score = 37 (18.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 303 GYGTSGYDANAGY 315
GY + GY GY
Sbjct: 152 GYNSQGYGGYGGY 164
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 201 (75.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
L + G+ W TTE L++YF+ FG+V V + +D TG +GFGFV F++ +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQ 127
H IDGR + K S++ Q +++K+FVG +TED R+
Sbjct: 166 HMIDGRWCDCKLPNSKQSQDEP----------------LRSRKVFVGRCTEDMTEDELRE 209
Query: 128 YFENYGHVTDVVV 140
+F YG V DV +
Sbjct: 210 FFSQYGDVMDVFI 222
Score = 112 (44.5 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF-ETEDAVDN 165
KT + V GLP TE ++YF +G V V V D T +GFGF+ F E E V
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 166 VLQKVFHELNGKLVEVK 182
+ Q+ H ++G+ + K
Sbjct: 162 MSQR--HMIDGRWCDCK 176
Score = 49 (22.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 285 ISAAPGALKSSWG-------SQNPSGYGTSGYDANAG 314
++AA AL+SSWG QN SG SG + N G
Sbjct: 323 MAAAQAALQSSWGMMGMLASQQNQSG--PSGNNQNQG 357
Score = 47 (21.6 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 300 NPSGYGTSGYDAN-----AGYGANRGS 321
NP G+G G N AG G N+GS
Sbjct: 279 NPGGFGNQGGFGNSRGGGAGLGNNQGS 305
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 216 (81.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E LF+G ++W+ TE L F +FG++S IM ++ TGR RGFG+V F++ +
Sbjct: 273 EGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAA 331
Query: 62 QVLQ--DKHTIDGRPVEAKRALSR---EEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGL 116
+ + +H IDGR + A R ++Q ++ +FVG L
Sbjct: 332 KAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNL 391
Query: 117 PPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNG 176
P + ED + F G+V + + D + RP+GFG++ + + D +K ++EL G
Sbjct: 392 PFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA----RKAYNELQG 447
Query: 177 KLVE 180
++
Sbjct: 448 AEID 451
Score = 37 (18.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 10/33 (30%), Positives = 10/33 (30%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA 322
G G P G G G G G G A
Sbjct: 474 GGFGGRGGRGGPRGGGRGGRGGFGGRGGGAGGA 506
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E DEGK+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 62 QVLQDK-HTIDGRPVEAKRA 80
+V+ K H ++G+ ++ KRA
Sbjct: 134 KVMDQKEHKLNGKVIDPKRA 153
Score = 169 (64.5 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F+ ++VD V+ +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 170 VFHELNGKLVEVKRA 184
H+LNGK+++ KRA
Sbjct: 139 KEHKLNGKVIDPKRA 153
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 169 (64.5 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGGL P E+ R+YF +G V + + D T + RGF FITF+ E+ V +++
Sbjct: 29 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 88
Query: 169 KVFHELNGKLVEVKRALPKD 188
K +H + E+K A+ K+
Sbjct: 89 KKYHNVGLSKCEIKVAMSKE 108
Score = 144 (55.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ DT E +R+YF FG+V + + D T + RGF F+ F + + ++++
Sbjct: 30 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 89
Query: 67 K-HTIDGRPVEAKRALSREE 85
K H + E K A+S+E+
Sbjct: 90 KYHNVGLSKCEIKVAMSKEQ 109
Score = 39 (18.8 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 65 QDKHTIDGRPVEAKRA 80
Q +H ++G+ ++ KRA
Sbjct: 4 QKEHKLNGKVIDPKRA 19
Score = 38 (18.4 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 303 GYGTSGYDANAGYG 316
GY +GY+ GYG
Sbjct: 164 GYDYTGYNNYYGYG 177
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 185 (70.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPS-VLD 61
SDEGKLFIGG+ +DT E +L F+++G +S+VV+++D+ T R RGFGFV F +P D
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 62 QVL-QDKHTIDGRPVEAKRA 80
++ + +DGR + +A
Sbjct: 62 AMMAMNGKAVDGRQIRVDQA 81
Score = 153 (58.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQ 168
K+F+GGL E+ Q F YG +++VVV+ D+ T+R RGFGF+TFE +DA D ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 169 KVFHELNGKLVEVKRA 184
++G+ + V +A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
Score = 51 (23.0 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 303 GYGTSGYD-ANAGYGANRGS 321
GYG+S +D + GYG + GS
Sbjct: 115 GYGSSRFDNRSGGYGGSSGS 134
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 53/143 (37%), Positives = 75/143 (52%)
Query: 46 PRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXX 104
P+ FGFV +S +D + + H +DGR VE KRA+SRE+
Sbjct: 41 PQSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL----------- 89
Query: 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
T KIFVGG+ E R YFE YG + + VM D+ + + RGF F+TF+ D VD
Sbjct: 90 ---TVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 146
Query: 165 NVLQKVFHELNGKLVEVKRALPK 187
++ +H +NG EV++AL K
Sbjct: 147 KIVVN-YHTINGHNCEVRKALSK 168
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GGI D E LRDYF ++G + + +M D+ +G+ RGF FV F D +D+++ +
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN 151
Query: 67 KHTIDGRPVEAKRALSREE 85
HTI+G E ++ALS++E
Sbjct: 152 YHTINGHNCEVRKALSKQE 170
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
+LFIGG++++T E +LR+ F G ++ V+MRD P+ FGFV +S +D +
Sbjct: 8 RLFIGGLSFETIEDSLREGF-EMGTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMCA 61
Query: 67 K-HTIDGRPVEAKRALSREE 85
+ H +DGR VE KRA+SRE+
Sbjct: 62 RPHKVDGRVVEPKRAVSRED 81
Score = 128 (50.1 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+++F+GGL ED R+ FE G + D VVM D P+ FGF+T+ + VD +
Sbjct: 7 RRLFIGGLSFETIEDSLREGFE-MGTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMC 60
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+++G++VE KRA+ ++
Sbjct: 61 ARPHKVDGRVVEPKRAVSRE 80
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 38/81 (46%), Positives = 59/81 (72%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRAL 81
+VL Q H +D + ++ L
Sbjct: 77 KVLGQPHHELDSKTCRRQKRL 97
Score = 160 (61.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL + D R YF +G + + +VM D T+R RGFGF+TF +VD VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 170 VFHELNGKLVEVKRAL 185
HEL+ K ++ L
Sbjct: 82 PHHELDSKTCRRQKRL 97
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 221 (82.9 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 54/180 (30%), Positives = 93/180 (51%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++ DTT+ L +YF+++G V +++RD T RGFGFV F+ + + D
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTL-TEDG 124
+ H + G+ V++KRA+ RE+ K+ + G+ + + D
Sbjct: 131 RPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGC------KLLLNGITNGVHSVDS 184
Query: 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL--QKVFHELNGKLVEVK 182
R YFE +G + V ++ +PRG GF+ +E +++ D L H +N + +EV+
Sbjct: 185 LRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVR 239
Score = 174 (66.3 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T++ YF +G V D +V+ D NT+ RGFGF+TF + + ++ +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+L GK V+ KRA+P++
Sbjct: 130 DRPHKLGGKTVDSKRAIPRE 149
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 190 (71.9 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
V++ + ++DGR + A
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHA 82
Score = 146 (56.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + +V++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
+ E L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 44 (20.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 303 GYGTSGYDAN-AGYGANRG 320
GYG+ YD+ GYG G
Sbjct: 111 GYGSGRYDSRPGGYGYGYG 129
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 188 (71.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 50/145 (34%), Positives = 71/145 (48%)
Query: 45 RPRGFGFVVFSDPSVLDQ-VLQDKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXX 103
R RGFGF+ +S +D V H R V KRA+SRE+
Sbjct: 35 RSRGFGFLTYSCVEEVDAAVCARPHKAAVRVV-GKRAVSREDS-------------VKPG 80
Query: 104 XYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAV 163
+ KK++VGG+ E R YF+ YG + + VM + + + RGF F+TF+ D V
Sbjct: 81 AHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTV 140
Query: 164 DNVLQKVFHELNGKLVEVKRALPKD 188
D +LQK H +NG EV + L K+
Sbjct: 141 DKILQK-HHAINGNNCEVGKVLSKE 164
Score = 182 (69.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KL++GGI DT E LR YF ++G + + +M + +G+ RGF FV F D +D++LQ
Sbjct: 87 KLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK 146
Query: 67 KHTIDGRPVEAKRALSREEQ 86
H I+G E + LS+E Q
Sbjct: 147 HHAINGNNCEVGKVLSKEMQ 166
Score = 117 (46.2 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
KLFIGG++++TT+ +LR++F ++G ++ D R RGFGF+ +S +D V
Sbjct: 3 KLFIGGLSFETTDDSLREHFEKWGTLT------DCGNKRSRGFGFLTYSCVEEVDAAVCA 56
Query: 66 DKHTIDGRPVEAKRALSREE 85
H R V KRA+SRE+
Sbjct: 57 RPHKAAVRVV-GKRAVSRED 75
Score = 115 (45.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL T+D R++FE +G +TD +R RGFGF+T+ + VD +
Sbjct: 2 RKLFIGGLSFETTDDSLREHFEKWGTLTDC------GNKRSRGFGFLTYSCVEEVDAAVC 55
Query: 169 KVFHELNGKLVEVKRALPKD 188
H+ ++V KRA+ ++
Sbjct: 56 ARPHKAAVRVVG-KRAVSRE 74
Score = 46 (21.3 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 290 GALKSSWGSQN-PSGYG--TSGYDANAGYGANRGSAVSP 325
G + S+G +G+G Y + GY + RG P
Sbjct: 204 GGSRGSYGGNGGDNGFGGDAGSYGSRPGYSSRRGYGGGP 242
Score = 43 (20.2 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 303 GYGTSGYDANAGYGANRG 320
GYG G + YG N G
Sbjct: 198 GYGGGGGGSRGSYGGNGG 215
Score = 40 (19.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 304 YGTS-GYDANAGYGANRG 320
YG+ GY + GYG G
Sbjct: 226 YGSRPGYSSRRGYGGGPG 243
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 158 (60.7 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
KKIFVGG+ E R YFE YG + + M D+ + + RGF F+TF+ D+VD ++
Sbjct: 100 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVI 159
Query: 169 KVFHELNGKLVEVKRALPK 187
+ +H NG V++ L K
Sbjct: 160 QKYHAANGHNRVVRKTLWK 178
Score = 156 (60.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+GGI DT E LRDYF ++G + + M D+ +G+ RGF FV F D +D+ V+Q
Sbjct: 101 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 160
Query: 66 DKHTIDGRPVEAKRALSREE 85
H +G ++ L ++E
Sbjct: 161 KYHAANGHNRVVRKTLWKQE 180
Score = 119 (46.9 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+ GL +T++ R +FE +G +TD VVM D NT+ RGFG + E + A+++
Sbjct: 14 QKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAME-EVDAAMNSRPC 72
Query: 169 KVFHELNGKLVEVKRALPKD 188
KV +++E KRA+ ++
Sbjct: 73 KV----GRRVLEPKRAVSQE 88
Score = 117 (46.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFI G++++ T+ +LR +F ++G ++ V+MRD T RGFG + +D +
Sbjct: 15 KLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAM-----EEVDAAMNS 69
Query: 67 KHTIDGRPV-EAKRALSREE 85
+ GR V E KRA+S+E+
Sbjct: 70 RPCKVGRRVLEPKRAVSQED 89
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 189 (71.6 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F FG +S+VV+++D+ T R RGFGF+ F+DP
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 142 (55.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF-ETEDAVDNVLQ 168
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + E A D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 169 KVFHELNGKLVEVKRA 184
L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 44 (20.5 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 303 GYGTSGYDAN-AGYGANRG 320
GYG+ YD+ GYG G
Sbjct: 111 GYGSGRYDSRPGGYGYGYG 129
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 184 (69.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
SDEGKLFIGG+++DTTE +L D F+++G ++ V + R++ T R RGFGFV F +P
Sbjct: 2 SDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKD 61
Query: 63 VLQDKH--TIDGRPVEAKRA 80
L+ + ++DGR + A
Sbjct: 62 ALEGMNGKSVDGRTIRVDEA 81
Score = 134 (52.2 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL TE F YG +T+V V ++ T R RGFGF+TFE D + L+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 170 VFHELNGKLVE 180
+NGK V+
Sbjct: 66 ----MNGKSVD 72
Score = 47 (21.6 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 290 GALKSSWGSQNPSGYGTSGYDANAGYGANRGSA 322
G KS G + G G D +GYG +R S+
Sbjct: 142 GGYKSGGGGYSSGGGGGYNRDRGSGYG-DRSSS 173
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 186 (70.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 142 (55.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + + ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
+ E L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 44 (20.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 303 GYGTSGYDAN-AGYGANRG 320
GYG+ YD+ GYG G
Sbjct: 109 GYGSGRYDSRPGGYGYGYG 127
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 186 (70.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 142 (55.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + + ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
+ E L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 44 (20.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 303 GYGTSGYDAN-AGYGANRG 320
GYG+ YD+ GYG G
Sbjct: 111 GYGSGRYDSRPGGYGYGYG 129
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 186 (70.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
Score = 147 (56.8 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + N ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
+ E L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 303 GYGTSGYDAN-AGYGANRG 320
GYG YD+ GYG G
Sbjct: 109 GYGNGRYDSRPGGYGYGYG 127
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 40/82 (48%), Positives = 57/82 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+TKKIFVGGL T + +QYFE +G VT ++ +D+ + R FGF+TFE+ED V+ V
Sbjct: 18 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKV 77
Query: 167 LQKVFHELNGKLVEVKRALPKD 188
+ FHE+N K+VE K+A PK+
Sbjct: 78 CEIHFHEINNKMVECKKAQPKE 99
Score = 127 (49.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG++ +TT ++ YF +FG V+ ++ D+ R FGFV F ++++V +
Sbjct: 21 KIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCEI 80
Query: 67 K-HTIDGRPVEAKRALSRE 84
H I+ + VE K+A +E
Sbjct: 81 HFHEINNKMVECKKAQPKE 99
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 186 (70.5 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
Score = 145 (56.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G +++VVV+ D+ TQR RGFGFITF + N ++
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
+ E L+G+ + V A
Sbjct: 67 MNGESLDGRQIRVDHA 82
Score = 40 (19.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 303 GYGTSGYDANAG-YGANRG 320
GYG+ YD G YG G
Sbjct: 111 GYGSGRYDNRPGAYGFGYG 129
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 52/159 (32%), Positives = 77/159 (48%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
L + G+ W TTE L+DYF FG+V V + RD +G +GFGFV F+D +V+ +
Sbjct: 107 LIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQR 166
Query: 68 HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQ 127
H IDGR + K S+ +++K+FVG +T D RQ
Sbjct: 167 HMIDGRWCDCKLPNSK-----------YFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQ 215
Query: 128 YFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+F YG VTDV + + R F F+TF + ++
Sbjct: 216 FFMQYGEVTDVFI-----PKPFRAFAFVTFADDQVAQSL 249
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 174 (66.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD-PSVLD 61
SDEGKLFIGG+ ++T E L FT++G +S+VV+++D+ T R RGFGFV F + D
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 62 QVL-QDKHTIDGRPVEAKRA 80
++ + ++DGR + +A
Sbjct: 62 AMMAMNGKSVDGRQIRVDQA 81
Score = 153 (58.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQ 168
K+F+GGL ED Q F YG +++VVV+ D+ T+R RGFGF+TFE +DA D ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 169 KVFHELNGKLVEVKRA 184
++G+ + V +A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
Score = 51 (23.0 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 303 GYGTSGYD-ANAGYGANRGS 321
GYG+S +D + GYG + GS
Sbjct: 115 GYGSSRFDNRSGGYGGSSGS 134
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 153 (58.9 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
L + G+ W TTE +LR+YF +G+V I +D +G+ +GFGFV F +VL ++
Sbjct: 109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNR 168
Query: 68 HTIDGRPVEAKRALSREEQH 87
H IDGR E K S+ H
Sbjct: 169 HLIDGRWCEVKVPNSKGMGH 188
Score = 123 (48.4 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170
+ V GLP TE+ R+YFE YG V + D + + +GFGF+ F + DA VL
Sbjct: 109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNR 168
Query: 171 FHELNGKLVEVK 182
H ++G+ EVK
Sbjct: 169 -HLIDGRWCEVK 179
Score = 123 (48.4 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 29/81 (35%), Positives = 40/81 (49%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+G D LR+YF++FG+V+ V I R R F FV F DP V + +
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF-----RAFSFVTFLDPDVAQSLCGE 247
Query: 67 KHTIDGRPVEAKRALSREEQH 87
H I G V A + EQ+
Sbjct: 248 DHIIKGVSVHVSNAAPKAEQN 268
Score = 110 (43.8 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRP-RGFGFITFETEDAVDNVLQ 168
K+FVG + D R+YF +G VTDV + RP R F F+TF D ++
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFI------PRPFRAFSFVTFLDPDVAQSLCG 246
Query: 169 KVFHELNGKLVEVKRALPK 187
+ H + G V V A PK
Sbjct: 247 ED-HIIKGVSVHVSNAAPK 264
Score = 40 (19.1 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 286 SAAPGALKSSWGSQNPSGYGTSGYDANAGYGANR 319
+A G +++G + GY +G + ++G NR
Sbjct: 328 TAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNR 361
Score = 37 (18.1 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 378 NGNSGYTNAS 387
NGN+G++N S
Sbjct: 509 NGNTGWSNQS 518
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 47/126 (37%), Positives = 66/126 (52%)
Query: 38 MRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRPVEAKRALSREEQHXXXXXXXXX 96
MRD T R RGFGFV ++ +D + + H +DGR VE KRA+SRE+
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA----- 55
Query: 97 XXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFIT 156
+ KKIFVGG+ E R YFE YG + + +M D+ + + RGF F+T
Sbjct: 56 --------HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 107
Query: 157 FETEDA 162
F+ D+
Sbjct: 108 FDDHDS 113
Score = 138 (53.6 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD 56
K+F+GGI DT E LRDYF ++G + + IM D+ +G+ RGF FV F D
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 110
Score = 114 (45.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 141 MYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188
M D NT+R RGFGF+T+ T + VD + H+++G++VE KRA+ ++
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE 48
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 182 (69.1 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
SDEGKLFIGG+++DTTE +L + F+++G +++V ++RD+ T R RGFGFV F +P
Sbjct: 20 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79
Query: 63 VL--QDKHTIDGRPVEAKRA 80
+ + +DGR + A
Sbjct: 80 AMAAMNGKQVDGRMIRVDEA 99
Score = 146 (56.5 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQ 168
K+F+GGL TE + F YG + V V+ D+ T R RGFGF+TFE EDA D +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 169 KVFHELNGKLVEVKRA 184
+++G+++ V A
Sbjct: 84 MNGKQVDGRMIRVDEA 99
Score = 40 (19.1 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 303 GYGTSGYDANAGYGANR 319
G G GY + YG++R
Sbjct: 126 GRGGGGYGGDRSYGSDR 142
Score = 38 (18.4 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 295 SWGSQNPSGYG--TSGYDANAGYGANR 319
S+G GY + GY + GY NR
Sbjct: 176 SYGGGG-GGYSNRSGGYSSGGGYRDNR 201
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 170 (64.9 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 31/82 (37%), Positives = 53/82 (64%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EGKLF+GG+ ++T E L D+F+ FG + +VV+++D T R +GFGF+ F++P
Sbjct: 1 MSSEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHA 60
Query: 61 DQVLQ--DKHTIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SNAMRATNGESLDGRQIHVDHA 82
Score = 131 (51.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVGGL E +F ++G + +VVV+ D T+R +GFGFITF + N ++
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 170 VFHE-LNGKLVEVKRA 184
E L+G+ + V A
Sbjct: 67 TNGESLDGRQIHVDHA 82
Score = 52 (23.4 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 295 SWGSQN----PSGYGTS-GYDANAGYGANRGS 321
S+GS P GYG GY + YG+++GS
Sbjct: 109 SYGSSRYDSLPGGYGYGYGYGRSRDYGSSQGS 140
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 171 (65.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 31/82 (37%), Positives = 53/82 (64%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M S+EG LF+GG+ ++T E L D+F+ FG +S+VV+++D+ T R RGF F+ F++P
Sbjct: 1 MSSEEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHA 60
Query: 61 DQVLQDKH--TIDGRPVEAKRA 80
++ + ++DGR + A
Sbjct: 61 SDAMRPMNGKSLDGRQIRVDHA 82
Score = 123 (48.4 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQK 169
+F+GGL E +F ++G +++VVV+ D+ TQR RGF FITF E A D +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 170 VFHELNGKLVEVKRA 184
L+G+ + V A
Sbjct: 68 NGKSLDGRQIRVDHA 82
Score = 49 (22.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 303 GYGTSGYDAN-AGYGANRGSAVSPLGH 328
GYG+ YD+ GYG G + H
Sbjct: 111 GYGSGRYDSQPGGYGYGSGRSQDSFDH 137
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/130 (35%), Positives = 70/130 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++ T+ LR +F ++G ++ V+MRD T R GFGFV ++ +D + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 67 K-HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGF 125
+ H +D R +E KRA+SRE+ + KKIFVG + E
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGT-------------HLTVKKIFVGVVKEDTEEHHL 107
Query: 126 RQYFENYGHV 135
R YFE YG +
Sbjct: 108 RDYFEQYGKI 117
Score = 174 (66.3 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 32/79 (40%), Positives = 55/79 (69%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+F+GGL T++G R +FE +G +T+ VVM D NT+R GFGF+T+ T + VD + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 170 VFHELNGKLVEVKRALPKD 188
H+++ +++E KRA+ ++
Sbjct: 61 RPHKVDERVLEPKRAVSRE 79
Score = 122 (48.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164
+ KKIFVG + E R YFE YG + Q + GF F TF+ D+VD
Sbjct: 87 HLTVKKIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVD 138
Query: 165 NVLQKVFHELNGKLVEVKRALPK 187
++ + +H + G EV++ L K
Sbjct: 139 KIVIQKYHTVGGHTCEVRKPLSK 161
Score = 117 (46.2 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ-VLQ 65
K+F+G + DT E LRDYF ++G + + + GF F F D +D+ V+Q
Sbjct: 92 KIFVGVVKEDTEEHHLRDYFEQYGKIQR--------QWKKEGFCFFTFDDHDSVDKIVIQ 143
Query: 66 DKHTIDGRPVEAKRALSREE 85
HT+ G E ++ LS++E
Sbjct: 144 KYHTVGGHTCEVRKPLSKQE 163
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 49/189 (25%), Positives = 86/189 (45%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ- 65
KLF+G + ++ L F G+V V ++ DK TGR RGFGFV S S ++ Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 66 -DKHTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYF--------KTKKIFVGGL 116
+ + +DGRP+ ++ Y +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 117 PPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELN 175
+ + F G V + V+YD+++ R +GFGF+T+++ V N ++ + +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 176 GKLVEVKRA 184
G+ + V A
Sbjct: 272 GRQIRVSEA 280
Score = 127 (49.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169
K+FVG LP + Q FE+ G+V V V+YD+ T R RGFGF+T + V+ Q+
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 170 VF-HELNGKLVEVKRALP 186
+EL+G+ + V P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
Score = 51 (23.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 285 ISAAPGALKSSWG-SQNP-SGYGTSG--YDANAGYGANRGSAV 323
++A P K G S+ P S +G+SG Y G GA G+ V
Sbjct: 164 VNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRV 206
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK 67
L + G+ W TTE L++YF+ FG+V V + +D TG +GFGFV F++ +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HTIDGRPVEAKRALSREEQHXXXXXXXXXXXXXXXXXYFKTKKIFVGGLPPTLTEDGFRQ 127
H IDGR + K S++ Q +++K+FVG +TED R+
Sbjct: 166 HMIDGRWCDCKLPNSKQSQDEP----------------LRSRKVFVGRCTEDMTEDELRE 209
Query: 128 YFENYGHVTDVVV 140
+F YG V DV +
Sbjct: 210 FFSQYGDVMDVFI 222
Score = 112 (44.5 bits), Expect = 0.00050, P = 0.00050
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF-ETEDAVDN 165
KT + V GLP TE ++YF +G V V V D T +GFGF+ F E E V
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 166 VLQKVFHELNGKLVEVK 182
+ Q+ H ++G+ + K
Sbjct: 162 MSQR--HMIDGRWCDCK 176
WARNING: HSPs involving 828 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 414 268 0.00096 114 3 11 22 0.39 34
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1078
No. of states in DFA: 594 (63 KB)
Total size of DFA: 191 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.64u 0.09s 18.73t Elapsed: 00:00:01
Total cpu time: 18.68u 0.09s 18.77t Elapsed: 00:00:01
Start: Fri May 10 00:24:26 2013 End: Fri May 10 00:24:27 2013
WARNINGS ISSUED: 2