BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015040
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/237 (64%), Positives = 187/237 (78%), Gaps = 6/237 (2%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
M+SD+GKLF+GGI+W+T E LR++FT +G+VSQ ++MRDK TGRPRGFGFV+FSDPSVL
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHNS-RSGNFNSGRGSEGGGYFKTKKIFVGGLPPT 119
D+VLQ+KH+ID R V+ KRA+SREEQ S R+GN N+ R S G Y KTKKIFVGGLPPT
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
LT++ FRQYFE YG VTDV +MYDQ T RPRGFGF++F++EDAVD+VL K FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 180 EVKRALPKDAS-----GGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGGFP 231
EVKRALPKDA+ GG GY GGN SS+DGR+D NR++Q QS G P
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLP 237
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/277 (41%), Positives = 159/277 (57%), Gaps = 29/277 (10%)
Query: 1 MESDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSV 59
ME DE GKLF+GG++W+TT+ L YF RFGD+ V+M++ +GR RGFGFV F+DP+
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 60 LDQVLQD-KHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPP 118
++ VLQ+ HT+DGR ++ K R Q + +GGGY K+F+GGLP
Sbjct: 61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQ-----------KPKKGGGY----KVFLGGLPS 105
Query: 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKL 178
+TE R +F YG VT+VV+MYDQ ++ RGFGF++FE E +V++V + + LNGK
Sbjct: 106 NVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQ 165
Query: 179 VEVKRALPKDASGGGRSGGYQ---GYGASGGNTSSFDGRLDGNRYMQTQSNAGGFPPFSG 235
VE+K+A P+D SGG S YG G S + MQ Q+ G PP +
Sbjct: 166 VEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLN- 224
Query: 236 YGAAGYGYGAASGGVGYGGYGGYGMG---GYGSTGPG 269
GA + GY G+G GYG++GPG
Sbjct: 225 -----MPIGAPNMMPGYQGWGTSPQQQQYGYGNSGPG 256
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 142/258 (55%), Gaps = 39/258 (15%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
++GK+FIGG+ W+TT+ +LRDYF +FG+V +MRD TTGR RGFGF+ F +P +++V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 LQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTED 123
+ +H +DG+ ++ KRA+ REEQ KT K+FVGG+P TE+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE-------------------KTAKMFVGGVPGDCTEE 261
Query: 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183
FR +F +G V D +M D++T RPRGFGF+T+E E AV+ + + + ++GK VEVKR
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKR 321
Query: 184 ALPKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGGFPP---------FS 234
A PK + GY GN + + Y Q + GG P
Sbjct: 322 ATPKASLRDSHDRHQHGY---HGNANPY--------YAQNMNMYGGMTPAMMAQYYRQMQ 370
Query: 235 GYGAAGYGYGAASGGVGY 252
Y A AA+G V Y
Sbjct: 371 QYMEAMRNMPAAAGAVPY 388
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
K+F+GG+ D TE R++F +FG V +M DK TGRPRGFGFV + + S ++ +
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Query: 66 DKH-TIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDG 124
+ TI G+PVE KRA + +S + + G+ Y + ++ GG+ P +
Sbjct: 307 QPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNMNMY-GGMTPAMMAQY 365
Query: 125 FRQ---YFENYGHVTDVV--VMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
+RQ Y E ++ V Y Q P G + + ++ G V
Sbjct: 366 YRQMQQYMEAMRNMPAAAGAVPYPQPVM-PAGMADWQQQQQQGAAYFDPSKMNQGTGDGV 424
Query: 180 EVKRALPKDASGGGRSGGYQGYGASGGN 207
++P SG R GGY G G N
Sbjct: 425 PFSPSMP---SGSSR-GGYHGRNPGGPN 448
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 121/189 (64%), Gaps = 16/189 (8%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL Q H +D + ++ K A R Q + +TKKIFVGGL
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANT 121
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+ +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+VE
Sbjct: 122 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Query: 181 VKRALPKDA 189
K+A PK+
Sbjct: 182 CKKAQPKEV 190
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 121/189 (64%), Gaps = 16/189 (8%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D GK+FIGG++W T+ +LRDYF++FG++ + ++MRD TT R RGFGFV F+DP+ +D
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL Q H +D + ++ K A R Q + +TKKIFVGGL
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSANT 121
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+ +QYFE +G V D ++M+D+ T R RGFGF+TFE ED V+ V + FHE+N K+VE
Sbjct: 122 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Query: 181 VKRALPKDA 189
K+A PK+
Sbjct: 182 CKKAQPKEV 190
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 16/190 (8%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
+ +D GK+FIGG++W T+ +LRDYF R+GD+S+ ++M+D TT R RGFGFV FSDP+ +
Sbjct: 24 VPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV 83
Query: 61 DQVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPT 119
D+VL Q H +DG+ V+ K A R + +TKKIFVGGL
Sbjct: 84 DKVLTQGTHELDGKKVDPKVAFPRRAHPKMVT---------------RTKKIFVGGLSAP 128
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
T + + YFE +G + D ++M+D+ T R RGFGF+TF++ED VD V + FHE+N K+V
Sbjct: 129 TTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMV 188
Query: 180 EVKRALPKDA 189
E K+A PK+
Sbjct: 189 ECKKAQPKEV 198
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 9/193 (4%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSR---EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLP 117
VL + HT+DGR ++ K R E+ + G + G S+ K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEG-WQKGPRSDSS---KSNKIFVGGIP 121
Query: 118 PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGK 177
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 178 LVEVKRALPKDAS 190
VEVKRA P+D+
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E LR+YF +FG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQHNS 89
+ H I G+ VE KRA R+ ++ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKNQA 197
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 9/193 (4%)
Query: 3 SDE-GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+DE GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 62 QVLQDK-HTIDGRPVEAKRALSR---EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLP 117
VL + HT+DGR ++ K R E+ + G + G S+ K+ KIFVGG+P
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEG-WQKGPRSDNS---KSNKIFVGGIP 121
Query: 118 PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGK 177
E R+YF+ +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 178 LVEVKRALPKDAS 190
VEVKRA P+D+
Sbjct: 182 KVEVKRAEPRDSK 194
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 145/255 (56%), Gaps = 23/255 (9%)
Query: 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
GKLF+GG+ W TT+ TLR YF+++G+V VIM+DKTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HTIDGRPVEAKRALSR---EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLT 121
+ HT+DGR ++ K R E+ R G +E ++ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENS---RSNKIFVGGIPHNCG 126
Query: 122 EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEV 181
E ++YF +G VT+VV++YD QRPRGFGFITFE E +VD + FH++ GK VEV
Sbjct: 127 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 186
Query: 182 KRALPKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSN-AGGFPPFSGYGAAG 240
KRA P+D+ Q G G N G+R MQ+ +N G PP + G +
Sbjct: 187 KRAEPRDSKS-------QTPGPPGSNQW-------GSRAMQSTANGWTGQPPQTWQGYSP 232
Query: 241 YGYGAASGGVGYGGY 255
G +G GGY
Sbjct: 233 QGMWMPTGQT-IGGY 246
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
S K+F+GGI + E L++YF RFG V++VV++ D RPRGFGF+ F D +DQ
Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Query: 63 VLQDK-HTIDGRPVEAKRALSREEQHNS 89
+ H I G+ VE KRA R+ + +
Sbjct: 171 AVNMHFHDIMGKKVEVKRAEPRDSKSQT 198
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 122/198 (61%), Gaps = 21/198 (10%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q + +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ +QYFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKDA-----SGGGRS 195
+A PK+ S GRS
Sbjct: 183 KAQPKEVMSPTGSARGRS 200
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 21/198 (10%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q + +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKDA-----SGGGRS 195
+A PK+ S GRS
Sbjct: 183 KAQPKEVMSPTGSARGRS 200
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 21/198 (10%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D K+FIGG++W TT+ LR+YF +FG+V + ++MRD T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTE 122
L Q +H +D + ++ K A R Q + +TKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT---------------RTKKIFVGGLSVNTTV 122
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YFE +G V D ++M+D+ T R RGFGF+TFE+ED V+ V + FHE+N K+VE K
Sbjct: 123 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK 182
Query: 183 RALPKDA-----SGGGRS 195
+A PK+ S GRS
Sbjct: 183 KAQPKEVMSPTGSARGRS 200
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 116/187 (62%), Gaps = 19/187 (10%)
Query: 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL 60
+ + K+FIGG+ WDTTE LR+YF ++G V+ + IM+D TGR RGFGF+ F PS +
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 DQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
D+V++ +H +DG+ ++ KRA+ R+EQ KT KIFVGG+ P +
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD-------------------KTGKIFVGGIGPDV 254
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
F ++F +G + D +M D++T + RGFGF+T+++ DAVD V Q F + + +E
Sbjct: 255 RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIE 314
Query: 181 VKRALPK 187
+KRA P+
Sbjct: 315 IKRAEPR 321
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL Q +H +DGR ++ K+A++ ++ KKIFVGGL P
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKKD--------------------PVKKIFVGGLNPEA 170
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
TE+ R+YF +G + + + D + RGF FITF+ ED V VL+K FH ++G E
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCE 230
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 231 IKVAQPKEV 239
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 22/190 (11%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
E D GK+F+GG++WDT++ L+DYFT+FG+V I D TGR RGFGF++F D + ++
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGL-PPT 119
+VL Q +H +DGR ++ K+A++ ++ KKIFVGGL P +
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAMAMKKD--------------------PVKKIFVGGLNPES 164
Query: 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179
TE+ R+YF +G + + + D + RGF FITF+ E+ V VL+K FH ++G
Sbjct: 165 PTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKC 224
Query: 180 EVKRALPKDA 189
E+K A PK+
Sbjct: 225 EIKVAQPKEV 234
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 94 FNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFG 153
N+ + E G K+FVGGL ++ + YF +G V D + D NT R RGFG
Sbjct: 59 INASKNEEDAG-----KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 113
Query: 154 FITFETEDAVDNVLQKVFHELNGKLVEVKRAL--PKDASGGGRSGGYQ------------ 199
FI F+ +V+ VL + H L+G++++ K+A+ KD GG
Sbjct: 114 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREY 173
Query: 200 --GYGASGGNTSSFDGRLDGNR------YMQTQSNAGGF-PPFSGYGAAGYGYGAASGGV 250
+G D +L+ R + + + F + A
Sbjct: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
Query: 251 GYGGYGGY 258
Y Y
Sbjct: 234 VYQQ-QQY 240
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 114/182 (62%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ HTIDGR VE KRA++REE ++ G + KK+FVGG+ E
Sbjct: 70 RPHTIDGRVVEPKRAVAREE-------------SAKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + ++ D+ + + RGF F+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 117 REYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 176
Query: 186 PK 187
K
Sbjct: 177 SK 178
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ S
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESA 91
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 113/182 (62%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+++ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ HTIDGR VE KRA++REE ++ G + KK+FVGG+ E
Sbjct: 70 RPHTIDGRVVEPKRAVAREE-------------SAKPGAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + ++ D+ + + RGFGF+TF D VD ++ + +H +NG EV++AL
Sbjct: 117 REYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKAL 176
Query: 186 PK 187
K
Sbjct: 177 SK 178
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R ++E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ S
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESA 91
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H + G EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 186 PK 187
PK
Sbjct: 182 PK 183
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNTTPHKVDGRVVEPKRAVSREDS 95
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD + R RGFGFV + +D +
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ S G + KKIFVGG+ ED
Sbjct: 75 RPHKVDGRVVEPKRAVSRED-------------SSRPGAHLTVKKIFVGGIKEDTEEDHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YFE YG + + +M D+ + + RGF F+TFE D+VD ++ + +H +N +V++AL
Sbjct: 122 REYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 59/84 (70%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R++FE +G +TD VVM D N++R RGFGF+T+ + D VD
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MTARPHKVDGRVVEPKRAVSREDS 95
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 CK 183
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 109/189 (57%), Gaps = 20/189 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ DEGK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D +D
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL+ K H +DG+ ++ KRA + +G E KK+FVGGL P
Sbjct: 82 KVLETKEHKLDGKLIDPKRA--------------KALKGKE-----PPKKVFVGGLSPET 122
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
TE+ +QYF +G + ++ + D T RGF F+T+ E+ V +L+ FH++ E
Sbjct: 123 TEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCE 182
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 183 IKVAQPKEV 191
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + G + KKIFVGG+ E
Sbjct: 88 RPHKVDGRVVEPKRAVSRED-------------SARPGAHLTVKKIFVGGIKEDTEEYHL 134
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R Y E+YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 135 RDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 194
Query: 186 PK 187
K
Sbjct: 195 SK 196
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 57/85 (67%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 167 LQKVFHELNGKLVEVKRALPKDASG 191
+ H+++G++VE KRA+ ++ S
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDSA 109
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 116/183 (63%), Gaps = 14/183 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+F+GG+ +TT+ +R+++++FG+++ +++MRD TT R RGFGFV FS + +D ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H IDG+ V+ KRA+ R++++ S S TK+++V G+ TED
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESN-------------VSTKRLYVSGVREDHTEDML 130
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+YF YG VT ++ D+ TQ+PRGFGF+TF+ D+VD + + H +NG +V++ L
Sbjct: 131 TEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGL 190
Query: 186 PKD 188
KD
Sbjct: 191 SKD 193
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+KIFVGGL T+D R+++ +G +TD++VM D T+R RGFGF+TF + VD ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 169 KVFHELNGKLVEVKRALPKDASGGGRSG 196
+ H ++GK V+ KRA+P+D S
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESN 110
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ D+VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED-------------SVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS 116
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED-------------SVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS 116
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED-------------SVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +NG EVK+AL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 186 PK 187
K
Sbjct: 203 SK 204
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS 116
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR +F ++G ++ V+MRD T R RGFGFV ++ +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHL 121
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + +M D+ + + RGF F+TF+ ++VD ++ + +H +NG EV++AL
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 186 PK 187
K
Sbjct: 182 SK 183
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T++ R +FE +G +TD VVM D NT+R RGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 167 LQKVFHELNGKLVEVKRALPKDAS 190
+ H+++G++VE KRA+ ++ S
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDS 95
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TT+ +LR++F ++G ++ V+MRD T R RGFGFV +S +D +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+SRE+ + G + KKIFVGG+ E
Sbjct: 88 RPHKVDGRVVEPKRAVSRED-------------SARPGAHLTVKKIFVGGIKEDTEEYHL 134
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + VM D+ + + RGF F+TF+ D VD ++ + +H +N EVK+AL
Sbjct: 135 RDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKAL 194
Query: 186 PK 187
K
Sbjct: 195 SK 196
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 57/85 (67%)
Query: 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166
+ +K+F+GGL T+D R++FE +G +TD VVM D T+R RGFGF+T+ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 167 LQKVFHELNGKLVEVKRALPKDASG 191
+ H+++G++VE KRA+ ++ S
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDSA 109
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FGDV + D TGR RGFGFV+F + +D
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+V+ Q +H ++G+ ++ KRA + + + KKIFVGGL P
Sbjct: 151 KVMDQKEHKLNGKVIDPKRAKAMKTKE-------------------PVKKIFVGGLSPDT 191
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E+ R+YF +G V + + D T + RGF FITF+ E+ V +++K +H + E
Sbjct: 192 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE 251
Query: 181 VKRALPKD 188
+K A+ K+
Sbjct: 252 IKVAMSKE 259
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ DEGK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D +D
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 QVLQ-DKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL+ ++H +DG+ ++ KRA + +G E KK+FVGGL P
Sbjct: 82 KVLETNEHKLDGKLIDPKRA--------------KALKGKE-----PPKKVFVGGLSPET 122
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
TE+ +QYF +G + ++ + D T RGF F+T+ E+ V +L+ FH++ E
Sbjct: 123 TEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCE 182
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 183 IKAAQPKEV 191
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+V+ Q +H ++G+ ++ KRA + + + KKIFVGGL P
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTKE-------------------PVKKIFVGGLSPDT 193
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E+ R+YF +G V + + D T + RGF FITF+ E+ V +++K +H + E
Sbjct: 194 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE 253
Query: 181 VKRALPKD 188
+K A+ K+
Sbjct: 254 IKVAMSKE 261
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ +E K+FIGG++WDTT+ L+DYF++FG+V + D TGR RGFGFV+F + +D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 QVL-QDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+V+ Q +H ++G+ ++ KRA + + + KKIFVGGL P
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTKE-------------------PVKKIFVGGLSPDT 193
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
E+ R+YF +G V + + D T + RGF FITF+ E+ V +++K +H + E
Sbjct: 194 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE 253
Query: 181 VKRALPKD 188
+K A+ K+
Sbjct: 254 IKVAMSKE 261
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL+ K H +DG+ ++ KRA + +G E KK+FVGGL P
Sbjct: 204 KVLELKEHKLDGKLIDPKRA--------------KALKGKEP-----PKKVFVGGLSPDT 244
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+ +H++ E
Sbjct: 245 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 304
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 305 IKVAQPKEV 313
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + ++
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL+ K H +DG+ ++ KRA + +G E KK+FVGGL P
Sbjct: 86 KVLELKEHKLDGKLIDPKRA--------------KALKGKE-----PPKKVFVGGLSPDT 126
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+ +H++ E
Sbjct: 127 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 186
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 187 IKVAQPKEV 195
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Query: 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLD 61
+ D+GK+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 QVLQDK-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL 120
+VL+ K H +DG+ ++ KRA + +G E KK+FVGGL P
Sbjct: 85 KVLELKEHKLDGKLIDPKRA--------------KALKGKEP-----PKKVFVGGLSPDT 125
Query: 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVE 180
+E+ ++YF +G + ++ + D T RGF FIT+ E+ V +L+ +H++ E
Sbjct: 126 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 185
Query: 181 VKRALPKDA 189
+K A PK+
Sbjct: 186 IKVAQPKEV 194
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 114/182 (62%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ + TT+ L+ +F ++G++ VV+M+D T R RGFGF+ +S S++D+ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H IDGR VE KRA+ R++ + +G KK+FVG L E
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGA-------------TVKKLFVGALKDDHDEQSI 138
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YF+++G++ D+ ++ D+ T + RGF F+ F+ D VD V+ + H+LNGK+V+VK+AL
Sbjct: 139 RDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL 198
Query: 186 PK 187
PK
Sbjct: 199 PK 200
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167
+K+F+GGL T++ + +FE +G++ DVVVM D T+R RGFGFIT+ +D
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 168 QKVFHELNGKLVEVKRALPK 187
+ H+++G++VE KRA+P+
Sbjct: 90 KSRPHKIDGRVVEPKRAVPR 109
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ + TT+ +L+ +F ++G++ VV+M+D T R RGFGF+ +S ++D
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H +DGR VE KRA+ R E GR G KK+FVGG+ + E+
Sbjct: 78 RPHKVDGRVVEPKRAVPRTE----------IGRPEAGAT---VKKLFVGGIKEEMEENDL 124
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YF+ YG V ++ D+ T++ RGF F+ F+ D VD + H++ GK ++VK+AL
Sbjct: 125 RDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKAL 184
Query: 186 PK 187
PK
Sbjct: 185 PK 186
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%)
Query: 94 FNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFG 153
N R ++ G +K+F+GGL T++ +Q+FE +G + DVVVM D T+R RGFG
Sbjct: 2 VNMDRENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFG 61
Query: 154 FITFETEDAVDNVLQKVFHELNGKLVEVKRALPKDASGGGRSGG 197
FIT+ VD+ H+++G++VE KRA+P+ G +G
Sbjct: 62 FITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGA 105
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 20/184 (10%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
K H +DG+ ++ KRA + +G E KK+FVGGL P +E+
Sbjct: 112 KEHKLDGKLIDPKRA--------------KALKGKEP-----PKKVFVGGLSPDTSEEQI 152
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
++YF +G + ++ + D T RGF FIT+ E+ V +L+ +H++ E+K A
Sbjct: 153 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 212
Query: 186 PKDA 189
PK+
Sbjct: 213 PKEV 216
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 20/184 (10%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
K+FIGG++WDT++ L +Y +RFG+V I D TGR RGFGFV+F D +D+VL+
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
K H +DG+ ++ KRA + +G E KK+FVGGL P TE+
Sbjct: 95 KEHKLDGKLIDPKRA--------------KALQGKEP-----PKKVFVGGLSPETTEEQI 135
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
+QYF +G + ++ + D T RGF F+T+ E+ V +L+ FH++ E+K A
Sbjct: 136 KQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQ 195
Query: 186 PKDA 189
PK+
Sbjct: 196 PKEV 199
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 14/180 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+A TTE L+ ++ ++G V VV+MRD T R RGFGF+ ++ ++D+ ++
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H IDG+ VEAKRAL R E+ SR N + KK+FVGGL E+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERE-SRETNIS------------VKKLFVGGLKDNHDEECL 139
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF +G+V V ++ D+ T + RGF F+ F+ DAVD + K H + V+VK+++
Sbjct: 140 REYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL P TE+ + ++ +G V DVVVM D T+R RGFGFIT+ VD +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 169 KVFHELNGKLVEVKRALPK 187
H ++GK VE KRALP+
Sbjct: 92 NRPHIIDGKTVEAKRALPR 110
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 14/182 (7%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG+ + TT+ L+ +F ++G++ VV+M+D T R RGFGF+ +S ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H IDGR VE KRA+ R+E + +G KK+FVGGL E+
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGA-------------TVKKLFVGGLRDDHDEECL 131
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R+YF+++G + V ++ D++T + RGF FI F+ D VD ++ + H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 186 PK 187
K
Sbjct: 192 AK 193
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 86 QHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQN 145
+ N +GN++ G E + +K+F+GGL T+DG + +FE +G++ DVVVM D
Sbjct: 3 EQNDSNGNYDDG--EEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPK 60
Query: 146 TQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187
T+R RGFGFIT+ +DN H+++G+ VE KRA+P+
Sbjct: 61 TKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 25/185 (13%)
Query: 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
D+ KLF+GG++W+TTE LRD+F ++G++ + + D TGR RGF F+VF++ +D+V
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 64 -LQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTE 122
D+H I+ + V+ K+A +R H KIFVGGL +++
Sbjct: 114 SAADEHIINSKKVDPKKAKAR---HG---------------------KIFVGGLTTEISD 149
Query: 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182
+ + YF +G++ +V + +D+ + +GF FITF++E V ++L+ ++ GK V+VK
Sbjct: 150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVK 209
Query: 183 RALPK 187
RA PK
Sbjct: 210 RATPK 214
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+FVGGL TE R +F YG + + V D T R RGF FI F +A+D V
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 169 KVFHELNGKLVEVKRALPKDASGGGRSGGY---------QGYGASGGNTSSFDGRLDGNR 219
H +N K V+ K+A K G GG + Y GN + D +
Sbjct: 116 ADEHIINSKKVDPKKA--KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQK 173
Query: 220 YMQTQSNAGGFPPFSGYGAAGYGYGAASGGVGYGGYGGYGMGGYGSTGP-------GFG 271
+Q F F + G + P G
Sbjct: 174 ---SQRKGFCFITFDSEQVVTDLLKTPKQKIA----GKEVDVKRATPKPENQMMGGMRG 225
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 66/249 (26%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE SG+ G + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREE----------SGKP---GAHVTVKKLFVGGIKEDTEEHHL 116
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +NG EV++AL
Sbjct: 117 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKAL 176
Query: 186 PKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGGFPPFSGYGAAGYGYGA 245
+ MQ
Sbjct: 177 SRQE-------------------------------MQE---------------------V 184
Query: 246 ASGGVGYGG 254
S G GG
Sbjct: 185 QSSRSGRGG 193
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ SG
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 44/224 (19%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE SG+ G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE----------SGKP---GAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTI----------- 177
Query: 186 PKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGG 229
G+ + L + QS+ G
Sbjct: 178 -------------------NGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ SG
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 44/224 (19%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE SG+ G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE----------SGKP---GAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD ++ + +H +
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTI----------- 177
Query: 186 PKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGG 229
G+ + L + QS+ G
Sbjct: 178 -------------------NGHNAEVRKALSRQEMQEVQSSRSG 202
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ SG
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 120/251 (47%), Gaps = 66/251 (26%)
Query: 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66
KLFIGG++++TTE +LR+Y+ ++G ++ V+MRD + R RGFGFV FS + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGF 125
+ H+IDGR VE KRA++REE SG+ G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE----------SGKP---GAHVTVKKLFVGGIKEDTEEHHL 128
Query: 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185
R YFE YG + + ++ D+ + + RGFGF+TF+ D VD + + +H +NG EV++AL
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKAL 188
Query: 186 PKDASGGGRSGGYQGYGASGGNTSSFDGRLDGNRYMQTQSNAGGFPPFSGYGAAGYGYGA 245
+ MQ
Sbjct: 189 SRQE-------------------------------MQE---------------------V 196
Query: 246 ASGGVGYGGYG 256
S G GG
Sbjct: 197 QSSRSGRGGNF 207
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168
+K+F+GGL TE+ R Y+E +G +TD VVM D ++R RGFGF+TF + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 169 KVFHELNGKLVEVKRALPKDASG 191
H ++G++VE KRA+ ++ SG
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,819,302
Number of Sequences: 539616
Number of extensions: 10988651
Number of successful extensions: 116110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 1558
Number of HSP's that attempted gapping in prelim test: 34818
Number of HSP's gapped (non-prelim): 25322
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)