Query 015040
Match_columns 414
No_of_seqs 433 out of 2416
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.4E-36 7.4E-41 296.7 25.0 170 3-191 105-279 (346)
2 TIGR01645 half-pint poly-U bin 100.0 4.7E-31 1E-35 273.4 20.6 179 4-190 106-287 (612)
3 TIGR01622 SF-CC1 splicing fact 100.0 1E-29 2.2E-34 261.9 21.7 177 3-186 87-265 (457)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3.1E-34 252.1 20.6 166 4-188 2-172 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-29 8.3E-34 249.0 22.3 186 4-189 88-351 (352)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 5E-28 1.1E-32 250.5 28.1 178 4-190 57-310 (578)
7 KOG0144 RNA-binding protein CU 100.0 7E-30 1.5E-34 245.7 13.2 171 3-192 32-211 (510)
8 KOG4205 RNA-binding protein mu 100.0 3.7E-30 8.1E-35 247.2 10.3 177 3-192 4-181 (311)
9 KOG0148 Apoptosis-promoting RN 100.0 4E-29 8.7E-34 228.0 14.7 174 5-187 62-238 (321)
10 KOG0117 Heterogeneous nuclear 100.0 4.6E-28 9.9E-33 234.3 16.0 179 5-191 83-335 (506)
11 TIGR01628 PABP-1234 polyadenyl 100.0 8E-28 1.7E-32 254.0 19.2 164 7-188 2-168 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3.2E-27 6.9E-32 249.4 18.7 183 4-189 177-366 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-26 5.4E-31 239.8 20.9 180 2-187 172-375 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.3E-26 2E-30 233.6 20.9 177 4-187 274-480 (481)
15 KOG0127 Nucleolar protein fibr 99.9 3.5E-26 7.6E-31 225.7 16.1 188 1-189 1-198 (678)
16 KOG0131 Splicing factor 3b, su 99.9 2.2E-26 4.7E-31 199.2 11.5 170 4-191 8-181 (203)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.7E-25 3.7E-30 231.6 20.4 167 5-188 2-175 (481)
18 KOG0127 Nucleolar protein fibr 99.9 3.5E-25 7.6E-30 218.6 17.0 183 5-188 117-379 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.5E-25 2.1E-29 227.9 20.3 182 4-185 294-500 (509)
20 KOG0145 RNA-binding protein EL 99.9 5.4E-25 1.2E-29 199.8 13.7 167 3-188 39-210 (360)
21 KOG0109 RNA-binding protein LA 99.9 7.8E-25 1.7E-29 201.8 10.1 148 6-190 3-153 (346)
22 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-22 6E-27 206.7 21.1 177 5-185 186-446 (457)
23 KOG0124 Polypyrimidine tract-b 99.9 2.1E-23 4.4E-28 197.3 8.4 174 5-186 113-289 (544)
24 KOG0145 RNA-binding protein EL 99.9 4.1E-22 8.8E-27 181.1 15.1 184 4-187 126-358 (360)
25 KOG0123 Polyadenylate-binding 99.9 1.9E-21 4.1E-26 193.2 15.9 152 6-190 2-156 (369)
26 KOG0147 Transcriptional coacti 99.9 3.2E-22 7E-27 198.8 8.2 180 2-186 176-357 (549)
27 KOG0146 RNA-binding protein ET 99.9 1.7E-21 3.7E-26 177.7 11.8 187 4-191 18-369 (371)
28 KOG0148 Apoptosis-promoting RN 99.9 1.4E-21 3.1E-26 178.7 10.4 140 2-188 3-143 (321)
29 KOG0110 RNA-binding protein (R 99.9 2.1E-21 4.5E-26 197.7 11.8 173 5-187 515-693 (725)
30 KOG4211 Splicing factor hnRNP- 99.8 1.6E-20 3.4E-25 184.6 15.7 171 4-185 9-180 (510)
31 KOG0105 Alternative splicing f 99.8 2.7E-19 5.9E-24 155.4 17.4 158 3-171 4-171 (241)
32 PLN03134 glycine-rich RNA-bind 99.8 2.3E-19 5E-24 156.0 16.2 85 107-191 33-118 (144)
33 KOG0123 Polyadenylate-binding 99.8 2E-19 4.4E-24 178.7 15.8 171 2-187 73-246 (369)
34 KOG0144 RNA-binding protein CU 99.8 3.5E-19 7.7E-24 172.2 11.5 183 4-187 123-504 (510)
35 TIGR01645 half-pint poly-U bin 99.8 2.1E-17 4.6E-22 172.0 20.0 79 4-82 203-283 (612)
36 KOG4206 Spliceosomal protein s 99.7 4.5E-17 9.8E-22 146.7 15.8 173 5-185 9-220 (221)
37 KOG4212 RNA-binding protein hn 99.7 4.3E-17 9.4E-22 157.8 16.8 184 4-189 43-296 (608)
38 PLN03134 glycine-rich RNA-bind 99.7 2.4E-17 5.2E-22 143.4 10.4 82 3-84 32-115 (144)
39 KOG0106 Alternative splicing f 99.7 4.2E-17 9E-22 148.3 7.8 163 6-184 2-168 (216)
40 KOG0149 Predicted RNA-binding 99.7 1.7E-16 3.6E-21 143.4 7.7 79 4-82 11-90 (247)
41 KOG0113 U1 small nuclear ribon 99.6 6.9E-16 1.5E-20 143.4 9.7 89 106-194 99-188 (335)
42 KOG0147 Transcriptional coacti 99.6 1.3E-15 2.8E-20 152.0 12.2 173 7-184 280-525 (549)
43 TIGR01659 sex-lethal sex-letha 99.6 1.3E-15 2.8E-20 150.7 11.9 84 104-187 103-187 (346)
44 KOG0129 Predicted RNA-binding 99.6 2.4E-15 5.2E-20 149.3 13.6 183 2-184 256-451 (520)
45 COG0724 RNA-binding proteins ( 99.6 3.1E-15 6.7E-20 141.2 12.9 163 5-167 115-284 (306)
46 KOG0110 RNA-binding protein (R 99.6 5.7E-15 1.2E-19 151.2 14.5 178 2-185 382-596 (725)
47 KOG0122 Translation initiation 99.6 2.6E-15 5.7E-20 136.1 9.4 83 106-188 187-270 (270)
48 KOG0149 Predicted RNA-binding 99.6 2.3E-15 4.9E-20 136.1 7.2 80 107-186 11-90 (247)
49 KOG1457 RNA binding protein (c 99.6 4.1E-14 8.8E-19 126.7 13.8 163 5-171 34-269 (284)
50 KOG1190 Polypyrimidine tract-b 99.6 7E-14 1.5E-18 134.9 16.1 172 5-186 297-490 (492)
51 KOG1548 Transcription elongati 99.6 1.2E-13 2.6E-18 131.0 17.3 176 5-185 134-350 (382)
52 TIGR01648 hnRNP-R-Q heterogene 99.5 1.8E-14 3.8E-19 150.1 10.5 123 5-135 233-368 (578)
53 KOG0122 Translation initiation 99.5 1.6E-14 3.4E-19 131.1 8.6 81 3-83 187-269 (270)
54 PF00076 RRM_1: RNA recognitio 99.5 2.8E-14 6.1E-19 107.7 8.6 69 111-180 1-70 (70)
55 KOG0120 Splicing factor U2AF, 99.5 3.6E-14 7.7E-19 143.4 10.8 181 4-184 288-489 (500)
56 PF00076 RRM_1: RNA recognitio 99.5 3.9E-14 8.5E-19 106.8 8.1 68 8-76 1-70 (70)
57 KOG4211 Splicing factor hnRNP- 99.5 1.7E-12 3.8E-17 128.3 21.5 178 4-184 102-355 (510)
58 KOG0121 Nuclear cap-binding pr 99.5 2.5E-14 5.5E-19 117.6 6.9 79 3-81 34-114 (153)
59 KOG1365 RNA-binding protein Fu 99.5 6.9E-14 1.5E-18 133.8 9.4 182 5-188 161-363 (508)
60 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.9E-18 104.5 8.8 69 111-180 1-70 (70)
61 PF14259 RRM_6: RNA recognitio 99.5 1E-13 2.2E-18 105.2 7.9 68 8-76 1-70 (70)
62 KOG0125 Ataxin 2-binding prote 99.5 1E-13 2.3E-18 130.5 8.5 83 104-188 92-175 (376)
63 KOG4207 Predicted splicing fac 99.5 5.8E-14 1.3E-18 124.4 6.3 82 104-185 9-91 (256)
64 KOG0121 Nuclear cap-binding pr 99.5 8.8E-14 1.9E-18 114.4 6.8 78 107-184 35-113 (153)
65 PLN03120 nucleic acid binding 99.5 2E-13 4.3E-18 127.5 9.9 79 3-84 2-81 (260)
66 PLN03120 nucleic acid binding 99.5 2.9E-13 6.3E-18 126.4 10.0 76 108-186 4-79 (260)
67 PLN03121 nucleic acid binding 99.5 5.7E-13 1.2E-17 122.6 11.6 81 1-84 1-82 (243)
68 KOG0130 RNA-binding protein RB 99.4 3.7E-13 8E-18 111.7 8.5 86 106-191 70-156 (170)
69 KOG0124 Polypyrimidine tract-b 99.4 1.9E-12 4E-17 123.4 13.6 77 5-81 210-288 (544)
70 KOG0107 Alternative splicing f 99.4 4.9E-13 1.1E-17 115.9 8.2 78 107-189 9-87 (195)
71 KOG1190 Polypyrimidine tract-b 99.4 1.2E-12 2.7E-17 126.4 11.4 174 2-186 25-227 (492)
72 KOG0113 U1 small nuclear ribon 99.4 5.8E-13 1.3E-17 124.1 8.5 78 4-81 100-179 (335)
73 KOG0107 Alternative splicing f 99.4 4.9E-13 1.1E-17 115.8 7.5 76 4-84 9-86 (195)
74 KOG0117 Heterogeneous nuclear 99.4 8.9E-13 1.9E-17 128.7 10.0 120 54-185 41-162 (506)
75 COG0724 RNA-binding proteins ( 99.4 1.1E-12 2.3E-17 123.8 10.2 79 108-186 115-194 (306)
76 KOG1456 Heterogeneous nuclear 99.4 1.1E-11 2.4E-16 118.6 16.7 178 4-188 286-492 (494)
77 KOG0120 Splicing factor U2AF, 99.4 6.6E-13 1.4E-17 134.3 8.7 181 3-189 173-371 (500)
78 KOG0111 Cyclophilin-type pepti 99.4 2.7E-13 5.8E-18 121.1 5.1 84 107-190 9-93 (298)
79 PLN03213 repressor of silencin 99.4 1.2E-12 2.6E-17 128.9 9.1 77 107-187 9-88 (759)
80 smart00362 RRM_2 RNA recogniti 99.4 3.8E-12 8.3E-17 95.2 9.1 71 110-182 1-72 (72)
81 KOG0105 Alternative splicing f 99.4 3.2E-12 6.9E-17 111.6 9.4 77 107-186 5-82 (241)
82 smart00362 RRM_2 RNA recogniti 99.3 4.3E-12 9.4E-17 94.9 8.6 70 7-78 1-72 (72)
83 smart00360 RRM RNA recognition 99.3 4.4E-12 9.5E-17 94.4 8.5 70 113-182 1-71 (71)
84 PLN03121 nucleic acid binding 99.3 4.6E-12 1E-16 116.6 9.8 76 107-185 4-79 (243)
85 KOG0108 mRNA cleavage and poly 99.3 1.1E-12 2.3E-17 132.0 6.0 80 6-85 19-100 (435)
86 smart00360 RRM RNA recognition 99.3 7.5E-12 1.6E-16 93.2 8.5 69 10-78 1-71 (71)
87 KOG0125 Ataxin 2-binding prote 99.3 3.8E-12 8.2E-17 120.1 7.9 82 4-87 95-178 (376)
88 PLN03213 repressor of silencin 99.3 1.2E-11 2.7E-16 121.9 11.2 76 4-83 9-88 (759)
89 KOG4212 RNA-binding protein hn 99.3 1.9E-11 4.1E-16 119.0 12.2 79 107-186 43-123 (608)
90 KOG4207 Predicted splicing fac 99.3 2.9E-12 6.2E-17 113.7 6.0 79 4-82 12-92 (256)
91 KOG0131 Splicing factor 3b, su 99.3 4.4E-12 9.6E-17 110.6 6.7 79 107-185 8-87 (203)
92 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.5E-16 91.6 9.7 73 110-183 1-74 (74)
93 KOG4210 Nuclear localization s 99.3 4.6E-12 9.9E-17 121.9 7.3 179 4-190 87-267 (285)
94 KOG1456 Heterogeneous nuclear 99.3 4.4E-11 9.5E-16 114.5 13.6 164 4-190 30-202 (494)
95 KOG0111 Cyclophilin-type pepti 99.3 2.1E-12 4.6E-17 115.5 4.0 85 1-85 6-92 (298)
96 KOG4205 RNA-binding protein mu 99.3 4.3E-12 9.4E-17 122.6 5.6 118 5-136 97-215 (311)
97 KOG0126 Predicted RNA-binding 99.3 6E-13 1.3E-17 115.8 -0.4 79 3-81 33-113 (219)
98 KOG0114 Predicted RNA-binding 99.3 3.4E-11 7.4E-16 95.7 9.5 78 107-187 17-95 (124)
99 cd00590 RRM RRM (RNA recogniti 99.3 3.6E-11 7.9E-16 90.3 9.2 71 7-78 1-73 (74)
100 KOG0116 RasGAP SH3 binding pro 99.2 9.8E-11 2.1E-15 117.3 13.4 84 108-191 288-371 (419)
101 KOG0114 Predicted RNA-binding 99.2 4.3E-11 9.4E-16 95.1 8.4 81 4-87 17-99 (124)
102 KOG0126 Predicted RNA-binding 99.2 1.5E-12 3.3E-17 113.4 0.2 78 107-184 34-112 (219)
103 KOG0130 RNA-binding protein RB 99.2 1.8E-11 3.9E-16 101.7 6.5 80 6-85 73-154 (170)
104 KOG0108 mRNA cleavage and poly 99.2 3E-11 6.6E-16 121.6 8.3 81 109-189 19-100 (435)
105 KOG0415 Predicted peptidyl pro 99.2 2.6E-11 5.6E-16 115.3 6.3 81 106-186 237-318 (479)
106 KOG4454 RNA binding protein (R 99.2 5.3E-12 1.2E-16 113.0 1.1 138 3-171 7-146 (267)
107 KOG0128 RNA-binding protein SA 99.2 1.3E-12 2.9E-17 136.3 -3.4 149 4-188 666-816 (881)
108 smart00361 RRM_1 RNA recogniti 99.1 1.6E-10 3.5E-15 87.8 7.9 61 122-182 2-70 (70)
109 KOG1365 RNA-binding protein Fu 99.1 1.8E-10 3.8E-15 110.7 9.4 176 4-183 59-239 (508)
110 KOG0109 RNA-binding protein LA 99.1 1E-10 2.2E-15 108.8 5.7 71 109-187 3-74 (346)
111 PF13893 RRM_5: RNA recognitio 99.1 3.7E-10 8E-15 81.8 7.5 55 125-184 1-56 (56)
112 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.7E-14 83.0 7.5 60 18-77 1-69 (70)
113 KOG0132 RNA polymerase II C-te 99.0 1.9E-09 4E-14 111.9 9.0 77 106-188 419-496 (894)
114 KOG0132 RNA polymerase II C-te 99.0 9.6E-10 2.1E-14 114.0 6.9 76 4-85 420-497 (894)
115 KOG0226 RNA-binding proteins [ 98.9 5.2E-10 1.1E-14 102.5 3.3 165 8-186 99-269 (290)
116 KOG0146 RNA-binding protein ET 98.9 1.1E-09 2.5E-14 100.8 5.1 82 3-84 283-366 (371)
117 PF13893 RRM_5: RNA recognitio 98.9 3.4E-09 7.5E-14 76.7 6.5 54 22-80 1-56 (56)
118 KOG0415 Predicted peptidyl pro 98.9 1.8E-09 3.9E-14 102.9 6.3 84 2-85 236-321 (479)
119 KOG0112 Large RNA-binding prot 98.9 8.1E-10 1.7E-14 116.2 4.1 158 3-188 370-532 (975)
120 KOG0153 Predicted RNA-binding 98.9 4.3E-09 9.2E-14 100.4 8.1 79 104-188 224-304 (377)
121 KOG4307 RNA binding protein RB 98.9 4.4E-09 9.6E-14 107.8 7.9 180 3-183 309-510 (944)
122 KOG0153 Predicted RNA-binding 98.8 9.4E-09 2E-13 98.1 6.8 74 3-82 226-302 (377)
123 KOG4661 Hsp27-ERE-TATA-binding 98.8 2.7E-08 5.9E-13 100.0 9.9 80 107-186 404-484 (940)
124 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.9E-08 4.2E-13 101.1 8.5 79 5-83 405-485 (940)
125 KOG4208 Nucleolar RNA-binding 98.8 2.9E-08 6.4E-13 88.7 8.6 81 107-187 48-130 (214)
126 KOG4208 Nucleolar RNA-binding 98.7 4E-08 8.6E-13 87.8 8.8 80 4-83 48-130 (214)
127 KOG4206 Spliceosomal protein s 98.7 4.8E-08 1E-12 88.7 7.7 79 107-188 8-91 (221)
128 KOG1548 Transcription elongati 98.7 4.9E-08 1.1E-12 93.2 8.1 80 106-186 132-220 (382)
129 KOG0116 RasGAP SH3 binding pro 98.7 3.3E-08 7.2E-13 99.3 7.1 78 4-81 287-365 (419)
130 KOG0533 RRM motif-containing p 98.7 6.2E-08 1.3E-12 90.4 8.3 82 107-189 82-164 (243)
131 KOG4209 Splicing factor RNPS1, 98.7 2.4E-08 5.3E-13 93.2 5.5 81 106-187 99-180 (231)
132 KOG4307 RNA binding protein RB 98.6 1.5E-07 3.3E-12 96.8 10.6 75 109-183 868-943 (944)
133 KOG1995 Conserved Zn-finger pr 98.6 1.2E-07 2.7E-12 91.3 9.1 84 106-189 64-156 (351)
134 KOG4676 Splicing factor, argin 98.6 1.6E-08 3.4E-13 97.8 2.5 168 4-175 6-214 (479)
135 KOG0533 RRM motif-containing p 98.6 1.4E-07 3.1E-12 88.1 8.2 83 2-85 80-164 (243)
136 KOG4454 RNA binding protein (R 98.6 3.1E-08 6.8E-13 89.1 2.8 76 107-184 8-84 (267)
137 KOG4209 Splicing factor RNPS1, 98.5 1.3E-07 2.8E-12 88.4 5.9 82 2-83 98-180 (231)
138 KOG4660 Protein Mei2, essentia 98.5 8.9E-08 1.9E-12 96.7 4.9 172 3-186 73-249 (549)
139 KOG0106 Alternative splicing f 98.4 2.3E-07 4.9E-12 84.9 5.0 72 109-188 2-74 (216)
140 KOG0128 RNA-binding protein SA 98.4 2.8E-08 6E-13 104.5 -1.9 163 5-176 571-735 (881)
141 PF04059 RRM_2: RNA recognitio 98.4 2.4E-06 5.2E-11 68.8 9.0 79 109-187 2-87 (97)
142 KOG2193 IGF-II mRNA-binding pr 98.4 7.1E-08 1.5E-12 94.1 -0.2 147 6-184 2-154 (584)
143 PF04059 RRM_2: RNA recognitio 98.3 3.4E-06 7.5E-11 67.9 9.1 60 6-65 2-63 (97)
144 KOG1457 RNA binding protein (c 98.3 5.9E-06 1.3E-10 74.8 10.7 86 107-192 33-123 (284)
145 KOG0151 Predicted splicing reg 98.3 2.5E-06 5.5E-11 88.2 8.9 82 105-186 171-256 (877)
146 KOG0226 RNA-binding proteins [ 98.3 9.5E-07 2.1E-11 81.3 5.1 82 3-84 188-271 (290)
147 KOG1995 Conserved Zn-finger pr 98.2 1.1E-06 2.4E-11 84.8 4.8 83 3-85 64-156 (351)
148 KOG4660 Protein Mei2, essentia 98.2 8.9E-07 1.9E-11 89.6 4.0 70 106-180 73-143 (549)
149 PF08777 RRM_3: RNA binding mo 98.1 6.9E-06 1.5E-10 67.4 5.4 69 109-183 2-76 (105)
150 KOG1855 Predicted RNA-binding 98.0 1.2E-06 2.5E-11 86.1 -0.2 66 106-171 229-307 (484)
151 KOG4849 mRNA cleavage factor I 98.0 2.2E-05 4.7E-10 75.3 7.5 75 107-181 79-156 (498)
152 KOG4849 mRNA cleavage factor I 98.0 7E-06 1.5E-10 78.6 4.2 77 5-81 80-160 (498)
153 KOG0151 Predicted splicing reg 97.9 2.6E-05 5.5E-10 81.0 7.2 78 4-81 173-255 (877)
154 PF08777 RRM_3: RNA binding mo 97.9 4.3E-05 9.3E-10 62.7 6.9 54 6-65 2-55 (105)
155 PF11608 Limkain-b1: Limkain b 97.8 8E-05 1.7E-09 57.6 6.6 68 6-83 3-77 (90)
156 PF11608 Limkain-b1: Limkain b 97.7 0.00013 2.7E-09 56.5 6.7 67 109-185 3-75 (90)
157 PF14605 Nup35_RRM_2: Nup53/35 97.7 7.9E-05 1.7E-09 53.2 5.2 53 5-64 1-53 (53)
158 KOG4210 Nuclear localization s 97.6 4.2E-05 9.1E-10 73.9 2.7 82 5-86 184-267 (285)
159 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00019 4.1E-09 51.2 4.8 52 109-167 2-53 (53)
160 KOG1855 Predicted RNA-binding 97.4 0.00018 4E-09 71.0 4.9 63 3-65 229-304 (484)
161 KOG2591 c-Mpl binding protein, 97.4 0.00037 8E-09 70.9 6.8 70 107-183 174-248 (684)
162 KOG0129 Predicted RNA-binding 97.4 0.00051 1.1E-08 69.5 7.5 78 4-81 369-452 (520)
163 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00065 1.4E-08 55.1 6.8 75 3-84 4-93 (100)
164 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0016 3.6E-08 52.7 6.7 78 107-185 5-90 (100)
165 COG5175 MOT2 Transcriptional r 97.1 0.00078 1.7E-08 64.6 5.4 82 106-187 112-203 (480)
166 PF10309 DUF2414: Protein of u 97.0 0.0032 6.9E-08 46.2 6.7 56 107-170 4-62 (62)
167 KOG0115 RNA-binding protein p5 96.8 0.0025 5.4E-08 59.3 5.8 101 57-185 7-112 (275)
168 KOG0921 Dosage compensation co 96.8 0.014 2.9E-07 63.3 11.7 14 44-57 899-912 (1282)
169 COG5175 MOT2 Transcriptional r 96.7 0.0041 8.8E-08 59.8 6.6 79 5-83 114-203 (480)
170 KOG2202 U2 snRNP splicing fact 96.7 0.00049 1.1E-08 63.9 0.4 61 20-81 83-146 (260)
171 KOG4676 Splicing factor, argin 96.6 0.0023 5E-08 62.7 4.6 76 109-184 8-86 (479)
172 KOG2314 Translation initiation 96.6 0.0031 6.8E-08 64.4 5.5 74 5-79 58-140 (698)
173 PF10567 Nab6_mRNP_bdg: RNA-re 96.6 0.04 8.8E-07 52.4 12.4 167 4-171 14-212 (309)
174 PF15023 DUF4523: Protein of u 96.5 0.017 3.8E-07 49.2 8.4 73 106-185 84-160 (166)
175 KOG2135 Proteins containing th 96.4 0.0014 3.1E-08 65.6 1.7 78 1-84 368-447 (526)
176 KOG2314 Translation initiation 96.4 0.011 2.4E-07 60.6 7.8 73 108-182 58-139 (698)
177 PF10309 DUF2414: Protein of u 96.4 0.017 3.8E-07 42.4 6.8 54 4-65 4-60 (62)
178 KOG3152 TBP-binding protein, a 96.3 0.0039 8.5E-08 58.0 4.1 71 4-74 73-157 (278)
179 PF07292 NID: Nmi/IFP 35 domai 96.3 0.0026 5.6E-08 50.2 2.0 71 50-130 1-74 (88)
180 KOG2591 c-Mpl binding protein, 96.2 0.0072 1.6E-07 61.8 5.6 69 4-79 174-248 (684)
181 PF08952 DUF1866: Domain of un 96.2 0.015 3.3E-07 50.0 6.8 56 124-187 52-107 (146)
182 KOG3152 TBP-binding protein, a 96.2 0.005 1.1E-07 57.3 4.0 72 107-178 73-157 (278)
183 KOG1996 mRNA splicing factor [ 96.2 0.012 2.5E-07 55.8 6.4 63 122-184 300-364 (378)
184 KOG2135 Proteins containing th 96.2 0.0041 8.9E-08 62.4 3.5 74 108-187 372-446 (526)
185 KOG0115 RNA-binding protein p5 96.1 0.021 4.6E-07 53.3 7.6 59 6-65 32-90 (275)
186 PF08675 RNA_bind: RNA binding 95.8 0.038 8.3E-07 42.9 6.6 52 5-65 9-60 (87)
187 KOG2202 U2 snRNP splicing fact 95.8 0.0048 1E-07 57.5 1.7 62 123-185 83-146 (260)
188 PF08952 DUF1866: Domain of un 95.7 0.022 4.9E-07 49.0 5.5 73 4-84 26-108 (146)
189 KOG2253 U1 snRNP complex, subu 95.7 0.0014 3E-08 68.2 -2.3 117 4-130 39-157 (668)
190 KOG2193 IGF-II mRNA-binding pr 95.6 0.0085 1.8E-07 59.4 3.0 75 109-189 2-78 (584)
191 PF08675 RNA_bind: RNA binding 95.4 0.061 1.3E-06 41.8 6.3 57 107-172 8-64 (87)
192 KOG2416 Acinus (induces apopto 95.3 0.028 6.1E-07 58.1 5.4 76 104-185 440-520 (718)
193 PF15023 DUF4523: Protein of u 95.1 0.094 2E-06 44.8 7.2 73 2-81 83-160 (166)
194 KOG1996 mRNA splicing factor [ 95.1 0.059 1.3E-06 51.2 6.6 65 19-83 300-367 (378)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.022 4.7E-07 51.2 2.7 63 3-65 5-73 (176)
196 KOG2416 Acinus (induces apopto 94.7 0.022 4.7E-07 58.8 2.8 74 4-83 443-522 (718)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.056 1.2E-06 48.6 5.1 79 107-185 6-96 (176)
198 KOG2318 Uncharacterized conser 94.5 0.068 1.5E-06 55.2 5.9 39 2-40 171-214 (650)
199 KOG2068 MOT2 transcription fac 93.9 0.02 4.3E-07 55.5 0.6 83 106-188 75-164 (327)
200 KOG2068 MOT2 transcription fac 93.9 0.04 8.7E-07 53.4 2.6 78 6-83 78-163 (327)
201 PF07576 BRAP2: BRCA1-associat 93.3 0.75 1.6E-05 38.0 8.9 68 107-176 12-81 (110)
202 KOG0804 Cytoplasmic Zn-finger 93.2 0.32 6.9E-06 49.0 7.7 65 4-70 73-140 (493)
203 PF07576 BRAP2: BRCA1-associat 92.9 0.9 1.9E-05 37.5 8.8 59 5-65 13-72 (110)
204 KOG4285 Mitotic phosphoprotein 92.2 0.39 8.5E-06 46.0 6.5 72 109-187 198-270 (350)
205 KOG0112 Large RNA-binding prot 92.1 0.053 1.2E-06 58.6 0.7 80 104-184 368-448 (975)
206 PF11767 SET_assoc: Histone ly 91.6 0.6 1.3E-05 34.8 5.7 50 16-74 11-62 (66)
207 PF14111 DUF4283: Domain of un 91.6 0.12 2.7E-06 44.7 2.3 118 8-143 18-140 (153)
208 PF03880 DbpA: DbpA RNA bindin 90.8 0.71 1.5E-05 35.1 5.6 58 118-184 11-74 (74)
209 PF04847 Calcipressin: Calcipr 90.7 0.61 1.3E-05 42.2 5.9 62 120-187 7-71 (184)
210 KOG4285 Mitotic phosphoprotein 90.6 0.78 1.7E-05 44.0 6.7 74 8-88 200-275 (350)
211 PF03880 DbpA: DbpA RNA bindin 90.3 1.3 2.9E-05 33.6 6.7 65 7-80 2-74 (74)
212 COG5594 Uncharacterized integr 89.2 0.18 4E-06 54.4 1.5 29 3-31 206-235 (827)
213 PF11767 SET_assoc: Histone ly 88.8 1.8 4E-05 32.2 6.2 54 119-181 11-65 (66)
214 KOG4574 RNA-binding protein (c 88.5 0.29 6.3E-06 52.8 2.4 73 110-188 300-375 (1007)
215 PF04847 Calcipressin: Calcipr 88.0 1 2.2E-05 40.7 5.3 60 17-82 7-70 (184)
216 PF07530 PRE_C2HC: Associated 87.7 0.55 1.2E-05 35.2 2.9 63 20-83 2-65 (68)
217 KOG2253 U1 snRNP complex, subu 87.6 0.42 9.1E-06 50.3 2.9 68 107-183 39-107 (668)
218 smart00596 PRE_C2HC PRE_C2HC d 87.3 0.54 1.2E-05 35.2 2.5 64 20-84 2-66 (69)
219 KOG4483 Uncharacterized conser 86.7 0.33 7.1E-06 48.1 1.4 59 107-172 390-449 (528)
220 KOG0804 Cytoplasmic Zn-finger 85.7 2.3 5E-05 43.1 6.8 67 108-176 74-142 (493)
221 KOG3973 Uncharacterized conser 85.3 0.13 2.8E-06 50.0 -2.0 21 7-27 151-171 (465)
222 PF07530 PRE_C2HC: Associated 84.5 2.1 4.5E-05 32.1 4.6 62 123-187 2-65 (68)
223 PRK11634 ATP-dependent RNA hel 84.0 15 0.00033 39.8 12.7 61 118-187 497-563 (629)
224 KOG4410 5-formyltetrahydrofola 83.5 7.3 0.00016 37.2 8.7 58 108-170 330-394 (396)
225 TIGR02542 B_forsyth_147 Bacter 82.5 2.8 6.1E-05 34.5 4.8 115 13-160 11-129 (145)
226 KOG4483 Uncharacterized conser 82.3 2.8 6.2E-05 41.8 5.7 58 5-69 391-449 (528)
227 smart00596 PRE_C2HC PRE_C2HC d 80.2 3.2 6.8E-05 31.1 4.0 60 123-185 2-63 (69)
228 PF03468 XS: XS domain; Inter 79.8 3.1 6.7E-05 34.7 4.4 47 120-169 29-76 (116)
229 KOG4574 RNA-binding protein (c 79.7 1.3 2.8E-05 48.0 2.6 72 6-83 299-374 (1007)
230 COG5638 Uncharacterized conser 78.5 8.6 0.00019 38.6 7.6 37 4-40 145-186 (622)
231 KOG3973 Uncharacterized conser 77.9 15 0.00033 36.1 8.9 8 121-128 199-206 (465)
232 PF10567 Nab6_mRNP_bdg: RNA-re 77.7 7 0.00015 37.6 6.6 80 106-185 13-106 (309)
233 KOG2891 Surface glycoprotein [ 77.7 7.4 0.00016 37.0 6.6 35 107-141 148-194 (445)
234 PF03468 XS: XS domain; Inter 77.6 2.6 5.7E-05 35.1 3.3 48 7-57 10-66 (116)
235 COG2061 ACT-domain-containing 77.5 48 0.001 28.9 11.1 120 27-171 27-152 (170)
236 KOG4213 RNA-binding protein La 75.1 0.66 1.4E-05 41.2 -0.9 68 108-179 111-179 (205)
237 PF14026 DUF4242: Protein of u 74.7 35 0.00076 26.1 8.7 59 111-171 3-68 (77)
238 KOG4213 RNA-binding protein La 73.7 2.7 5.8E-05 37.5 2.5 56 5-65 111-168 (205)
239 PF02714 DUF221: Domain of unk 73.3 4.6 0.0001 39.6 4.4 32 50-81 1-32 (325)
240 PRK14548 50S ribosomal protein 73.2 9.7 0.00021 29.8 5.3 51 12-65 27-79 (84)
241 KOG4008 rRNA processing protei 73.2 3.3 7.1E-05 38.5 3.0 35 2-36 37-71 (261)
242 TIGR03636 L23_arch archaeal ri 70.0 13 0.00027 28.7 5.2 54 9-65 17-72 (77)
243 PF07292 NID: Nmi/IFP 35 domai 69.2 2.5 5.4E-05 33.4 1.2 26 2-27 49-74 (88)
244 KOG3262 H/ACA small nucleolar 68.4 16 0.00035 32.7 6.1 18 123-140 89-106 (215)
245 PF14026 DUF4242: Protein of u 67.3 54 0.0012 25.1 8.8 56 8-65 3-65 (77)
246 KOG4019 Calcineurin-mediated s 64.8 7.3 0.00016 34.9 3.3 74 109-188 11-91 (193)
247 COG4010 Uncharacterized protei 62.3 28 0.00061 30.0 6.2 47 115-171 118-164 (170)
248 COG5193 LHP1 La protein, small 61.2 3.1 6.6E-05 41.6 0.3 61 5-65 174-244 (438)
249 PF00403 HMA: Heavy-metal-asso 60.3 34 0.00073 24.3 5.8 56 110-171 1-60 (62)
250 KOG4019 Calcineurin-mediated s 57.7 7.7 0.00017 34.7 2.2 71 6-82 11-89 (193)
251 PF14893 PNMA: PNMA 56.5 10 0.00022 37.5 3.1 52 5-57 18-72 (331)
252 PF08734 GYD: GYD domain; Int 55.1 69 0.0015 25.3 7.1 43 19-65 22-65 (91)
253 PF02714 DUF221: Domain of unk 54.0 15 0.00032 36.0 3.9 35 153-188 1-35 (325)
254 PF08002 DUF1697: Protein of u 53.8 53 0.0011 28.1 6.8 121 6-141 4-132 (137)
255 PF15513 DUF4651: Domain of un 52.4 30 0.00065 25.4 4.2 20 19-38 8-27 (62)
256 TIGR01124 ilvA_2Cterm threonin 52.4 1E+02 0.0023 32.4 10.0 62 108-171 418-483 (499)
257 KOG1177 Long chain fatty acid 51.9 77 0.0017 33.1 8.4 43 15-57 492-535 (596)
258 KOG1175 Acyl-CoA synthetase [L 51.1 57 0.0012 35.3 7.8 91 17-132 508-599 (626)
259 CHL00123 rps6 ribosomal protei 50.6 47 0.001 26.6 5.6 63 13-75 14-90 (97)
260 PRK09631 DNA topoisomerase IV 47.8 67 0.0014 34.8 7.7 58 4-65 219-280 (635)
261 PRK14548 50S ribosomal protein 47.7 44 0.00095 26.2 4.8 56 112-170 24-81 (84)
262 cd06405 PB1_Mekk2_3 The PB1 do 47.2 1.3E+02 0.0028 23.1 7.3 60 115-182 15-75 (79)
263 TIGR03636 L23_arch archaeal ri 47.0 49 0.0011 25.4 4.9 57 111-170 16-74 (77)
264 KOG2854 Possible pfkB family c 46.8 1.3E+02 0.0027 29.9 8.7 36 4-39 80-115 (343)
265 PHA00019 IV phage assembly pro 45.8 1.7E+02 0.0036 30.1 10.2 30 13-42 24-53 (428)
266 PF15063 TC1: Thyroid cancer p 45.7 10 0.00023 28.8 1.0 50 109-170 26-78 (79)
267 COG2608 CopZ Copper chaperone 45.7 1.1E+02 0.0023 22.8 6.6 58 108-171 3-64 (71)
268 PRK14461 ribosomal RNA large s 45.6 18 0.00038 36.5 2.8 40 31-80 168-212 (371)
269 PF00403 HMA: Heavy-metal-asso 45.3 92 0.002 22.0 6.0 53 7-65 1-57 (62)
270 smart00666 PB1 PB1 domain. Pho 43.8 1.2E+02 0.0026 22.7 6.8 54 113-171 14-69 (81)
271 cd06404 PB1_aPKC PB1 domain is 42.9 1.6E+02 0.0035 23.0 7.6 67 110-181 10-80 (83)
272 PRK11611 enhanced serine sensi 41.9 1.4E+02 0.003 28.4 8.0 77 107-186 128-214 (246)
273 PF14893 PNMA: PNMA 41.8 8.9 0.00019 38.0 0.1 51 107-159 17-71 (331)
274 PRK08559 nusG transcription an 41.6 67 0.0014 28.0 5.6 60 1-66 1-65 (153)
275 PTZ00237 acetyl-CoA synthetase 41.5 2.5E+02 0.0053 30.3 11.2 41 15-55 523-564 (647)
276 TIGR01033 DNA-binding regulato 41.3 1.7E+02 0.0038 27.5 8.7 42 7-55 96-143 (238)
277 PRK14464 ribosomal RNA large s 40.9 17 0.00037 36.3 1.9 41 28-78 138-181 (344)
278 TIGR02515 IV_pilus_PilQ type I 40.7 40 0.00088 34.5 4.7 64 16-82 7-76 (418)
279 COG5193 LHP1 La protein, small 40.7 13 0.00029 37.2 1.1 62 108-169 174-245 (438)
280 KOG3262 H/ACA small nucleolar 40.6 2.8E+02 0.0061 25.1 9.9 31 49-79 80-110 (215)
281 KOG4410 5-formyltetrahydrofola 40.3 34 0.00075 32.8 3.7 49 5-58 330-378 (396)
282 KOG1295 Nonsense-mediated deca 39.7 27 0.00059 34.9 3.1 62 4-65 6-70 (376)
283 PRK10905 cell division protein 39.2 46 0.001 32.6 4.5 61 109-174 248-310 (328)
284 smart00434 TOP4c DNA Topoisome 38.9 60 0.0013 33.6 5.6 59 5-64 232-294 (445)
285 PF04278 Tic22: Tic22-like fam 38.1 3.7E+02 0.008 25.9 10.6 21 152-172 203-223 (274)
286 COG5353 Uncharacterized protei 37.7 1.4E+02 0.003 26.1 6.6 58 3-60 85-155 (161)
287 PRK10629 EnvZ/OmpR regulon mod 37.5 2E+02 0.0042 24.4 7.6 57 120-184 50-108 (127)
288 PRK08279 long-chain-acyl-CoA s 37.1 2.4E+02 0.0051 29.9 10.1 41 15-55 470-512 (600)
289 cd06398 PB1_Joka2 The PB1 doma 36.9 2.1E+02 0.0046 22.6 7.5 58 119-181 24-84 (91)
290 cd00187 TOP4c DNA Topoisomeras 36.8 85 0.0019 32.5 6.3 57 6-64 226-286 (445)
291 PF10915 DUF2709: Protein of u 36.6 2.7E+02 0.0058 25.4 8.5 43 31-83 36-79 (238)
292 PRK12758 DNA topoisomerase IV 36.5 1.2E+02 0.0026 34.1 7.6 58 4-65 240-301 (869)
293 KOG3424 40S ribosomal protein 36.3 1.1E+02 0.0023 25.6 5.5 47 15-62 33-84 (132)
294 PF11411 DNA_ligase_IV: DNA li 36.0 26 0.00055 22.8 1.5 16 15-30 19-34 (36)
295 PTZ00191 60S ribosomal protein 35.3 1E+02 0.0022 26.8 5.5 58 2-64 80-139 (145)
296 PRK05738 rplW 50S ribosomal pr 34.6 1.1E+02 0.0025 24.2 5.4 30 12-41 26-57 (92)
297 PRK11901 hypothetical protein; 34.4 68 0.0015 31.6 4.8 62 108-174 245-308 (327)
298 PRK14459 ribosomal RNA large s 34.2 1.1E+02 0.0024 30.9 6.5 42 32-80 177-222 (373)
299 cd04908 ACT_Bt0572_1 N-termina 34.1 1.8E+02 0.0038 20.9 7.8 47 121-171 14-61 (66)
300 KOG2295 C2H2 Zn-finger protein 33.9 7 0.00015 40.7 -2.0 65 107-171 230-294 (648)
301 KOG2295 C2H2 Zn-finger protein 33.9 6.2 0.00013 41.1 -2.4 62 4-65 230-294 (648)
302 PRK06369 nac nascent polypepti 33.9 1E+02 0.0022 25.6 5.1 32 118-173 73-104 (115)
303 COG4874 Uncharacterized protei 33.9 1.4E+02 0.0031 28.2 6.6 30 1-31 154-183 (318)
304 PRK00110 hypothetical protein; 33.6 2.7E+02 0.0058 26.4 8.6 52 7-65 96-156 (245)
305 PF08206 OB_RNB: Ribonuclease 33.6 13 0.00028 26.7 -0.2 37 149-185 7-44 (58)
306 PF00276 Ribosomal_L23: Riboso 33.2 55 0.0012 25.9 3.4 48 12-59 26-85 (91)
307 COG4009 Uncharacterized protei 32.7 44 0.00094 25.8 2.5 19 157-175 59-77 (88)
308 PRK10629 EnvZ/OmpR regulon mod 31.7 3.2E+02 0.0068 23.1 7.9 54 4-65 34-91 (127)
309 PTZ00338 dimethyladenosine tra 31.4 84 0.0018 30.6 5.0 43 7-65 103-145 (294)
310 PF07045 DUF1330: Protein of u 31.2 1.9E+02 0.0042 20.9 5.9 44 20-65 9-57 (65)
311 PRK11230 glycolate oxidase sub 30.4 3.6E+02 0.0077 28.4 9.9 48 18-66 202-253 (499)
312 cd04889 ACT_PDH-BS-like C-term 30.3 1.8E+02 0.0039 19.9 6.0 43 19-64 12-55 (56)
313 KOG4365 Uncharacterized conser 30.2 11 0.00025 38.1 -1.2 77 108-185 3-80 (572)
314 PRK09630 DNA topoisomerase IV 30.0 89 0.0019 32.4 5.0 59 4-65 219-280 (479)
315 PF08503 DapH_N: Tetrahydrodip 29.8 2.1E+02 0.0047 22.3 6.0 65 17-81 1-75 (83)
316 PRK06131 dihydroxy-acid dehydr 29.4 2.4E+02 0.0052 30.2 8.2 38 150-188 401-439 (571)
317 KOG4365 Uncharacterized conser 29.3 17 0.00038 36.9 -0.1 74 6-80 4-79 (572)
318 TIGR01061 parC_Gpos DNA topois 29.2 1.2E+02 0.0026 33.6 6.3 58 5-64 248-309 (738)
319 PF07876 Dabb: Stress responsi 29.1 2.7E+02 0.0058 21.4 7.4 57 111-167 4-71 (97)
320 PRK11901 hypothetical protein; 28.4 1.2E+02 0.0026 29.9 5.4 57 5-66 245-303 (327)
321 PRK01178 rps24e 30S ribosomal 28.2 2.1E+02 0.0045 23.1 5.9 47 16-63 30-81 (99)
322 PRK00911 dihydroxy-acid dehydr 27.9 5.6E+02 0.012 27.4 10.5 36 150-187 398-433 (552)
323 PRK09224 threonine dehydratase 27.7 7.4E+02 0.016 26.1 12.6 62 108-171 422-487 (504)
324 cd00874 RNA_Cyclase_Class_II R 27.7 3.2E+02 0.007 27.0 8.5 46 110-156 188-236 (326)
325 KOG2891 Surface glycoprotein [ 27.5 42 0.00091 32.1 2.1 35 5-39 149-195 (445)
326 KOG4008 rRNA processing protei 27.2 48 0.001 31.0 2.3 32 107-138 39-70 (261)
327 COG3254 Uncharacterized conser 27.1 1.5E+02 0.0032 24.2 4.8 47 121-170 25-71 (105)
328 COG0820 Predicted Fe-S-cluster 27.0 1.5E+02 0.0032 29.7 5.9 42 32-80 153-196 (349)
329 KOG1635 Peptide methionine sul 26.8 84 0.0018 28.1 3.7 61 108-171 75-136 (191)
330 PF08734 GYD: GYD domain; Int 26.7 2.5E+02 0.0054 22.0 6.2 46 122-171 22-68 (91)
331 KOG0156 Cytochrome P450 CYP2 s 26.6 1E+02 0.0023 32.3 5.1 58 9-75 36-97 (489)
332 PF12687 DUF3801: Protein of u 26.6 1.7E+02 0.0037 26.8 5.9 50 120-171 39-91 (204)
333 PF00521 DNA_topoisoIV: DNA gy 26.6 81 0.0018 32.4 4.2 56 6-65 217-276 (426)
334 PF04026 SpoVG: SpoVG; InterP 26.6 1.1E+02 0.0024 23.9 4.0 26 31-56 2-27 (84)
335 KOG2014 SMT3/SUMO-activating c 26.3 44 0.00096 32.6 2.0 46 114-160 241-287 (331)
336 PF09869 DUF2096: Uncharacteri 26.2 2.2E+02 0.0049 25.2 6.2 47 115-171 118-164 (169)
337 PRK15321 putative type III sec 26.2 25 0.00054 28.1 0.3 51 113-171 26-77 (120)
338 PRK05560 DNA gyrase subunit A; 26.1 1.4E+02 0.0031 33.4 6.3 59 5-65 251-313 (805)
339 PF03439 Spt5-NGN: Early trans 26.1 78 0.0017 24.5 3.1 24 149-172 43-66 (84)
340 cd05992 PB1 The PB1 domain is 25.9 2.5E+02 0.0055 20.8 6.0 50 118-172 19-70 (81)
341 PF14111 DUF4283: Domain of un 25.8 30 0.00066 29.5 0.8 64 119-187 28-92 (153)
342 COG0217 Uncharacterized conser 25.7 1.4E+02 0.0029 28.2 5.0 52 7-65 96-158 (241)
343 TIGR01063 gyrA DNA gyrase, A s 25.5 1.4E+02 0.003 33.5 6.0 58 5-64 248-309 (800)
344 COG0351 ThiD Hydroxymethylpyri 25.4 1.6E+02 0.0034 28.3 5.6 15 156-170 151-165 (263)
345 PHA03008 hypothetical protein; 24.9 84 0.0018 28.7 3.4 40 1-40 17-56 (234)
346 COG2608 CopZ Copper chaperone 24.8 2.3E+02 0.0051 20.9 5.4 46 6-57 4-49 (71)
347 COG3048 DsdA D-serine dehydrat 24.7 26 0.00057 34.2 0.2 28 107-137 240-267 (443)
348 PF00564 PB1: PB1 domain; Int 24.5 2E+02 0.0043 21.6 5.2 53 114-171 16-70 (84)
349 COG1058 CinA Predicted nucleot 24.4 73 0.0016 30.4 3.1 68 106-175 178-247 (255)
350 cd06313 PBP1_ABC_sugar_binding 24.2 1.5E+02 0.0032 27.7 5.3 18 48-65 97-114 (272)
351 PRK05561 DNA topoisomerase IV 24.1 2E+02 0.0043 32.0 6.8 48 5-53 258-308 (742)
352 PF08544 GHMP_kinases_C: GHMP 24.0 2.6E+02 0.0056 20.8 5.8 41 20-65 37-77 (85)
353 PRK00453 rpsF 30S ribosomal pr 24.0 3.5E+02 0.0077 21.7 6.8 62 13-74 10-85 (108)
354 COG2088 SpoVG Uncharacterized 23.9 1.1E+02 0.0023 24.2 3.3 27 31-57 2-28 (95)
355 PHA01632 hypothetical protein 23.7 68 0.0015 22.9 2.0 21 8-28 19-39 (64)
356 COG5520 O-Glycosyl hydrolase [ 23.6 2.7E+02 0.0059 28.0 6.9 54 109-162 170-233 (433)
357 CHL00100 ilvH acetohydroxyacid 23.5 1.2E+02 0.0026 27.2 4.1 58 19-77 57-115 (174)
358 PF09702 Cas_Csa5: CRISPR-asso 23.2 88 0.0019 25.4 2.9 24 2-28 61-84 (105)
359 PRK13259 regulatory protein Sp 23.1 1.3E+02 0.0028 24.1 3.8 26 31-56 2-27 (94)
360 PF13607 Succ_CoA_lig: Succiny 22.9 4.8E+02 0.01 22.2 9.5 33 6-39 30-62 (138)
361 KOG2671 Putative RNA methylase 22.9 1.7E+02 0.0037 29.3 5.3 46 15-65 12-58 (421)
362 PF01282 Ribosomal_S24e: Ribos 22.7 3.5E+02 0.0076 21.0 6.2 47 15-62 11-62 (84)
363 COG0481 LepA Membrane GTPase L 22.6 2.7E+02 0.0058 29.3 6.8 60 5-65 297-361 (603)
364 PF13291 ACT_4: ACT domain; PD 22.4 3E+02 0.0066 20.4 5.8 65 8-72 9-74 (80)
365 PF08156 NOP5NT: NOP5NT (NUC12 22.3 34 0.00073 25.5 0.4 38 123-170 27-64 (67)
366 COG1922 WecG Teichoic acid bio 22.1 65 0.0014 30.7 2.3 45 7-65 9-54 (253)
367 PRK12338 hypothetical protein; 22.0 2.5E+02 0.0055 27.7 6.4 20 152-171 288-307 (319)
368 PF02426 MIase: Muconolactone 21.9 4.1E+02 0.0089 21.1 7.6 63 12-78 10-82 (91)
369 PTZ00108 DNA topoisomerase 2-l 21.8 2.7E+02 0.0058 33.3 7.5 24 5-28 885-908 (1388)
370 COG5507 Uncharacterized conser 21.6 90 0.0019 25.1 2.6 21 151-171 67-87 (117)
371 PF13193 AMP-binding_C: AMP-bi 21.3 2.5E+02 0.0054 20.5 5.0 52 124-176 1-55 (73)
372 cd04908 ACT_Bt0572_1 N-termina 21.1 3.2E+02 0.0069 19.5 7.6 44 18-65 14-58 (66)
373 PF12829 Mhr1: Transcriptional 21.0 1.7E+02 0.0037 23.2 4.1 50 13-66 20-70 (91)
374 cd04878 ACT_AHAS N-terminal AC 21.0 3E+02 0.0065 19.1 7.1 33 7-39 2-35 (72)
375 COG0225 MsrA Peptide methionin 20.9 1.8E+02 0.0038 26.1 4.6 74 109-185 58-136 (174)
376 TIGR00110 ilvD dihydroxy-acid 20.8 8.8E+02 0.019 25.8 10.4 36 150-187 383-418 (535)
377 COG5470 Uncharacterized conser 20.7 2.1E+02 0.0046 22.9 4.5 21 148-168 51-71 (96)
378 PF05189 RTC_insert: RNA 3'-te 20.7 1.8E+02 0.0038 23.3 4.3 49 7-55 12-65 (103)
379 COG0030 KsgA Dimethyladenosine 20.5 1.3E+02 0.0027 28.9 3.9 44 6-65 96-139 (259)
380 PF04026 SpoVG: SpoVG; InterP 20.5 1.4E+02 0.0031 23.3 3.5 26 134-159 2-27 (84)
381 KOG1999 RNA polymerase II tran 20.4 3.8E+02 0.0083 30.4 7.9 24 149-172 209-232 (1024)
382 PF14581 SseB_C: SseB protein 20.3 68 0.0015 25.9 1.8 63 122-185 21-89 (108)
383 COG1691 NCAIR mutase (PurE)-re 20.2 1.4E+02 0.0031 28.0 3.9 54 11-65 13-67 (254)
384 PRK07868 acyl-CoA synthetase; 20.2 9.8E+02 0.021 27.5 11.7 123 1-164 855-984 (994)
385 PF01071 GARS_A: Phosphoribosy 20.2 2.7E+02 0.0059 25.4 5.8 45 17-65 24-68 (194)
386 KOG0156 Cytochrome P450 CYP2 s 20.0 1.4E+02 0.0031 31.3 4.6 59 112-179 36-97 (489)
387 KOG3432 Vacuolar H+-ATPase V1 20.0 83 0.0018 25.8 2.1 22 15-36 43-64 (121)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.4e-36 Score=296.69 Aligned_cols=170 Identities=23% Similarity=0.418 Sum_probs=152.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||++||+++||++|+++|++|++|++|+|++++.|+++|+||||+|+++++|++||+ +.++|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 457899999999999999999999999999999999999999999999999999999999997 678999999999987
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
.+..+. ...++|||.|||+++||++|+++|++|++|++|+|++|+.++++|+||||+|+++
T Consensus 185 ~p~~~~-------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGES-------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc-------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 643211 1346799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCC--eEEEEEecCCCCCCC
Q 015040 161 DAVDNVLQKVF-HELNG--KLVEVKRALPKDASG 191 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~g--r~i~V~~a~p~~~~~ 191 (414)
++|++||++|+ ..|.+ ++|+|++++.+....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999999999 45654 799999988765443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=4.7e-31 Score=273.40 Aligned_cols=179 Identities=20% Similarity=0.448 Sum_probs=154.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||++++|++|+++|++||+|++|+|+.++.|+++||||||+|+++++|++||+ +.+.|+++.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 6789999999998644
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
......... . .........++|||.|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++++
T Consensus 186 ~~p~a~~~~-~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPII-D-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccc-c-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 321111000 0 00011124578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCCCCCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
+|++||+.++ .+|.++.|+|.++.++...
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999 6999999999999876543
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1e-29 Score=261.93 Aligned_cols=177 Identities=27% Similarity=0.501 Sum_probs=154.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +...|.+++|.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 467899999999999999999999999999999999999999999999999999999999999 7789999999998765
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
............. .......++|||.|||..+||++|+++|++||.|+.|.|+.++.++++++||||+|.+.+
T Consensus 167 ~~~~~~~~~~~~~-------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 167 AEKNRAAKAATHQ-------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred hhhhhhhhccccc-------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 4433222110000 001123689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
+|++||+.|+ ..|.+++|+|.++..
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999 699999999999863
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=252.08 Aligned_cols=166 Identities=23% Similarity=0.493 Sum_probs=150.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +...|.+++|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999998 6779999999999876
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
+.... ....+|||.+||.++++++|+++|++||.|+.++|+.+..++.+++||||+|++.+
T Consensus 82 ~~~~~-------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSDS-------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred ccccc-------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 53321 13467999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHcC-CccCC--eEEEEEecCCCC
Q 015040 162 AVDNVLQKVF-HELNG--KLVEVKRALPKD 188 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~g--r~i~V~~a~p~~ 188 (414)
+|++||++|+ ..+.+ ++|+|+++..+.
T Consensus 143 ~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999 45655 788999887654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.8e-29 Score=248.96 Aligned_cols=186 Identities=22% Similarity=0.373 Sum_probs=149.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC--ceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG--RPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g--r~l~v~~ 79 (414)
..++|||.|||+++++++|+++|++||+|+.++|+.++.++.+++||||+|++.++|++||+ +...+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998888999999999999999999998 4555555 5677777
Q ss_pred chhhhhhcccC----------CCCCC------------------------------------------------CCCCC-
Q 015040 80 ALSREEQHNSR----------SGNFN------------------------------------------------SGRGS- 100 (414)
Q Consensus 80 a~~~~~~~~~~----------~~~~~------------------------------------------------~~~~~- 100 (414)
+.......... ..... .....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 65332110000 00000 00000
Q ss_pred --------------CCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHH
Q 015040 101 --------------EGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNV 166 (414)
Q Consensus 101 --------------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~A 166 (414)
.........+|||.|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000011223699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CccCCeEEEEEecCCCCC
Q 015040 167 LQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 167 l~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
|++|+ ..|.+++|+|+++.++..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 99999 799999999999988764
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=5e-28 Score=250.53 Aligned_cols=178 Identities=24% Similarity=0.406 Sum_probs=137.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC-CCceeeeeec
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI-DGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i-~gr~l~v~~a 80 (414)
..++|||+|||++++|++|+++|++||+|++|+|++| .++++|+||||+|.++++|++||+ +..+| .++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 789999999999999999999999 44444 3555544332
Q ss_pred hhh--------------hhhcc---c------------CC-C-----------------------CCC------------
Q 015040 81 LSR--------------EEQHN---S------------RS-G-----------------------NFN------------ 95 (414)
Q Consensus 81 ~~~--------------~~~~~---~------------~~-~-----------------------~~~------------ 95 (414)
... ++... . .. . ...
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 110 00000 0 00 0 000
Q ss_pred -----CCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhcc--CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 015040 96 -----SGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENY--GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQ 168 (414)
Q Consensus 96 -----~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~ 168 (414)
.............++|||+||++++||++|+++|++| |+|++|++++ +||||+|++.++|++||+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHH
Confidence 0000001112335789999999999999999999999 9999998873 499999999999999999
Q ss_pred HcC-CccCCeEEEEEecCCCCCC
Q 015040 169 KVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 169 ~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
+|+ .+|++++|+|++++|+...
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 998 7999999999999997654
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7e-30 Score=245.73 Aligned_cols=171 Identities=29% Similarity=0.554 Sum_probs=150.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCC--ceeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDG--RPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~g--r~l~v 77 (414)
.+.-+|||+-||..++|+||+++|++||.|.+|.|++||.|+.+|+||||+|.+.++|.+|+. +.+.|.+ .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999999999999999999999999888877 5556655 56777
Q ss_pred eechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe
Q 015040 78 KRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF 157 (414)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF 157 (414)
+++....+... ..++|||+-|+..+||.||+++|.+||.|++|.|++|.. +.+||||||.|
T Consensus 112 k~Ad~E~er~~------------------~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~f 172 (510)
T KOG0144|consen 112 KYADGERERIV------------------EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKF 172 (510)
T ss_pred cccchhhhccc------------------cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEE
Confidence 77765554431 457899999999999999999999999999999999976 88999999999
Q ss_pred CCHHHHHHHHHHcC--CccCC--eEEEEEecCCCCCCCC
Q 015040 158 ETEDAVDNVLQKVF--HELNG--KLVEVKRALPKDASGG 192 (414)
Q Consensus 158 ~~~e~a~~Al~~~~--~~i~g--r~i~V~~a~p~~~~~~ 192 (414)
++.|.|..||+.++ +.+.+ .+|.|+||.+++.+..
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 99999999999999 36665 7999999998876653
No 8
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.96 E-value=3.7e-30 Score=247.16 Aligned_cols=177 Identities=58% Similarity=1.066 Sum_probs=165.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||++|+|+++||.|+++|.+|++|.+|.||+++.++++++|.||+|++++.+.++|. ..|.|+++.|+++++.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 378999999999999999999999999999999999999999999999999999999999999 6799999999999999
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
++.++....... ..++|||+.||.+++|++|+++|++|+.|.++.|+.|+++.++++|+||+|++++
T Consensus 84 ~r~~~~~~~~~~-------------~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 84 SREDQTKVGRHL-------------RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred Cccccccccccc-------------ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 988776543221 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccCCeEEEEEecCCCCCCCC
Q 015040 162 AVDNVLQKVFHELNGKLVEVKRALPKDASGG 192 (414)
Q Consensus 162 ~a~~Al~~~~~~i~gr~i~V~~a~p~~~~~~ 192 (414)
++++++.+..++|++++|+|+.|.|++....
T Consensus 151 sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 151 SVDKVTLQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccceecccceeeecCceeeEeeccchhhccc
Confidence 9999999999999999999999999987653
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4e-29 Score=227.95 Aligned_cols=174 Identities=26% Similarity=0.525 Sum_probs=150.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
+--|||+.|..+++-|+|++.|.+||+|.+++|++|.+|.++|||+||.|.+.++|++||+ +...|..|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4469999999999999999999999999999999999999999999999999999999999 67899999999999987
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
+..+.......+.. .-.....+.++|||++++..+||++|++.|++||+|.+|+|.+| +|||||.|++.|+
T Consensus 142 Kp~e~n~~~ltfde---V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDE---VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHH---HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 76332222111111 11112246799999999999999999999999999999999988 6799999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
|.+||..++ .+|.+..|++.|-+..
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccC
Confidence 999999998 6999999999997653
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.6e-28 Score=234.31 Aligned_cols=179 Identities=23% Similarity=0.415 Sum_probs=144.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC-CCceeeeeech
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI-DGRPVEAKRAL 81 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i-~gr~l~v~~a~ 81 (414)
-|.|||+.||.|+.|++|..+|++.|+|-+++||.|+.++.+||||||+|.+.++|++||+ +.++| .+|.|.|-.+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 5889999999999999999999999999999999999999999999999999999999999 55555 57777664332
Q ss_pred hh--------------hhhcc-------------------cC-------------------------------------C
Q 015040 82 SR--------------EEQHN-------------------SR-------------------------------------S 91 (414)
Q Consensus 82 ~~--------------~~~~~-------------------~~-------------------------------------~ 91 (414)
.+ ++..+ .. .
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 11 10000 00 0
Q ss_pred CCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 92 GNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.+.............+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||.|.+.++|.+||+.++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc
Confidence 0000001111112345589999999999999999999999999999999976 99999999999999999999
Q ss_pred -CccCCeEEEEEecCCCCCCC
Q 015040 172 -HELNGKLVEVKRALPKDASG 191 (414)
Q Consensus 172 -~~i~gr~i~V~~a~p~~~~~ 191 (414)
++|++..|+|.+|+|.....
T Consensus 315 gkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred CceecCceEEEEecCChhhhc
Confidence 79999999999999977543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=8e-28 Score=254.01 Aligned_cols=164 Identities=30% Similarity=0.530 Sum_probs=145.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhhh
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSRE 84 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~~ 84 (414)
+|||+|||+++||++|+++|++||+|++|+|++++.|++++|||||+|.++++|++||+ +...|.+++|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999998 5567999999998875432
Q ss_pred hhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHH
Q 015040 85 EQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVD 164 (414)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~ 164 (414)
.... ....+|||.|||.++++++|+++|++||.|++|+|+++. ++++++||||+|+++++|+
T Consensus 82 ~~~~-----------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SLRR-----------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred cccc-----------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHH
Confidence 1110 124579999999999999999999999999999999885 5788999999999999999
Q ss_pred HHHHHcC-CccCCeEEEEEecCCCC
Q 015040 165 NVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 165 ~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+||++++ ..+.++.|.|....++.
T Consensus 144 ~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 144 AAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred HHHHHhcccEecCceEEEecccccc
Confidence 9999999 68999999997765543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.2e-27 Score=249.44 Aligned_cols=183 Identities=26% Similarity=0.486 Sum_probs=153.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC----Cceeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID----GRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~----gr~l~v 77 (414)
..++|||.|||+++||++|+++|++||+|++|+|+++. ++++++||||+|+++++|++|++ +...|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 35679999999999999999999999999999999985 68899999999999999999998 667777 899999
Q ss_pred eechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe
Q 015040 78 KRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF 157 (414)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF 157 (414)
.++.++.+............ ...........+|||.||++++|+++|+++|++||+|++|+|+.| .++++++||||+|
T Consensus 256 ~~a~~k~er~~~~~~~~~~~-~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEEL-QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred ecccChhhhHHHHHhhHHhh-hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 88776654422111110000 000111234678999999999999999999999999999999999 6799999999999
Q ss_pred CCHHHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 158 ETEDAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 158 ~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
+++++|++||++++ +.|.+++|.|.+|..+..
T Consensus 334 ~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999999999 699999999999987764
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=2.5e-26 Score=239.83 Aligned_cols=180 Identities=18% Similarity=0.306 Sum_probs=141.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcc------------CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCC
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRF------------GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKH 68 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~------------G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~ 68 (414)
+...++|||+|||+++|+++|+++|+++ ..|+.|.+. +.++||||+|.++++|++||. +..
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4568999999999999999999999975 234444443 446899999999999999998 677
Q ss_pred CCCCceeeeeechhhhhhcccCCCC--------CCCC--CCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeee
Q 015040 69 TIDGRPVEAKRALSREEQHNSRSGN--------FNSG--RGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDV 138 (414)
Q Consensus 69 ~i~gr~l~v~~a~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v 138 (414)
.|.+++|+|.+.............. .... ...........++|||+|||..+|+++|+++|+.||.|+.|
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 8999999997654332111000000 0000 00111122456899999999999999999999999999999
Q ss_pred EEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 139 VVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 139 ~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
.|+++..++.++|||||+|++.++|++||+.|+ ..|.+++|.|+++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999999999999999999999998 7999999999998654
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=9.3e-26 Score=233.56 Aligned_cols=177 Identities=17% Similarity=0.332 Sum_probs=141.1
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..++|||+|||+ ++||++|+++|++||+|++|+|++++ ++||||+|.++++|++||+ +.+.|.+++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 568999999998 69999999999999999999999864 5899999999999999998 678999999999987
Q ss_pred hhhhhhcccCC---------CCCCCC---C--C----CCCCCccccceeEecCCCCCCCHHHHHHHhhccCc--eeeeEE
Q 015040 81 LSREEQHNSRS---------GNFNSG---R--G----SEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGH--VTDVVV 140 (414)
Q Consensus 81 ~~~~~~~~~~~---------~~~~~~---~--~----~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--I~~v~i 140 (414)
+.......... ...... + . .......++++|||.|||+++||++|+++|++||. |+.|+|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 65432211100 000000 0 0 00011245789999999999999999999999998 888888
Q ss_pred eecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe------EEEEEecCCC
Q 015040 141 MYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK------LVEVKRALPK 187 (414)
Q Consensus 141 ~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr------~i~V~~a~p~ 187 (414)
+.++. ..+++|||+|+++++|.+||.+|+ ++|.++ .|+|++++++
T Consensus 429 ~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 75443 257899999999999999999999 588887 4999999875
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=225.66 Aligned_cols=188 Identities=21% Similarity=0.456 Sum_probs=159.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
|+.+-.||||++||+.++.++|.++|+.+|+|..|.++.++.+..+|||+||+|+-.|++++||. +...|.++.|.|+
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 45556899999999999999999999999999999999999999999999999999999999999 5567999999999
Q ss_pred echhhhhhcccCCC-CCCCCCCC------CCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCce
Q 015040 79 RALSREEQHNSRSG-NFNSGRGS------EGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRG 151 (414)
Q Consensus 79 ~a~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG 151 (414)
.+.++......... ........ ......+..+|.|.|||+.|.+++|+.+|+.||.|.+|.|++..++..+ |
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-G 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-G 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-c
Confidence 98877655422111 11111111 1111234789999999999999999999999999999999988776665 9
Q ss_pred EEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 152 FGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 152 ~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
||||.|....+|.+||+.++ ++|.+|+|-|+||.++..
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999999999999 799999999999998763
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=199.18 Aligned_cols=170 Identities=26% Similarity=0.501 Sum_probs=152.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
...||||+||++.++|+.|.|+|-+.++|++|+|.+++.|...+|||||||.++|+|+-|++ ++..|.+|+|+|.++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999 7889999999999887
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceee-eEEeecCCCCCCceEEEEEeCCH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD-VVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
...... +....|||+||.+.++|..|.++|+.||.|.. -+|++|.+|+.+++|+||.|++.
T Consensus 88 ~~~~nl------------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 88 AHQKNL------------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred cccccc------------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 222111 13478999999999999999999999998765 58999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCeEEEEEecCCCCCCC
Q 015040 161 DAVDNVLQKVF-HELNGKLVEVKRALPKDASG 191 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~~ 191 (414)
|++.+||+.++ ..+..++|+|++++.+...+
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99999999999 68899999999998766543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.7e-25 Score=231.60 Aligned_cols=167 Identities=20% Similarity=0.295 Sum_probs=138.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH----cCCCCCCceeeeeec
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ----DKHTIDGRPVEAKRA 80 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~----~~~~i~gr~l~v~~a 80 (414)
+++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ +...|.+++|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999865 3699999999999999997 346899999999998
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
..++...... ... .........+|+|.||++++|+++|+++|++||+|++|+|++++. +++|||+|++.
T Consensus 76 ~~~~~~~~~~-~~~------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~ 144 (481)
T TIGR01649 76 TSQEIKRDGN-SDF------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESV 144 (481)
T ss_pred CCcccccCCC-Ccc------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCH
Confidence 7654222110 000 001112346799999999999999999999999999999987654 46899999999
Q ss_pred HHHHHHHHHcC-CccCC--eEEEEEecCCCC
Q 015040 161 DAVDNVLQKVF-HELNG--KLVEVKRALPKD 188 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~g--r~i~V~~a~p~~ 188 (414)
++|++|++.|+ .+|.+ ++|+|++++++.
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999999999 67754 689999998755
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.5e-25 Score=218.62 Aligned_cols=183 Identities=26% Similarity=0.515 Sum_probs=149.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
.-+|.|.||||.+.+++|+.+|.+||.|++|.|.+.+. ++..|||||.|.+..+|++||+ +.++|++|+|.|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45799999999999999999999999999999997765 4555999999999999999999 88999999999999886
Q ss_pred hhhhcc-------------------c----CCC-------------CC--C--------------------CCC-CCC--
Q 015040 83 REEQHN-------------------S----RSG-------------NF--N--------------------SGR-GSE-- 101 (414)
Q Consensus 83 ~~~~~~-------------------~----~~~-------------~~--~--------------------~~~-~~~-- 101 (414)
+..... . ... .. . ... +..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 532111 0 000 00 0 000 000
Q ss_pred ----------CCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 102 ----------GGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 102 ----------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.......++|||.|||+++||++|.++|++||+|+.+.|+.++.|++++|+|||.|.+..++.+||+...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001122799999999999999999999999999999999999999999999999999999999999883
Q ss_pred -------CccCCeEEEEEecCCCC
Q 015040 172 -------HELNGKLVEVKRALPKD 188 (414)
Q Consensus 172 -------~~i~gr~i~V~~a~p~~ 188 (414)
..|++|.|.|..|.++.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 26889999999998765
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=9.5e-25 Score=227.90 Aligned_cols=182 Identities=19% Similarity=0.354 Sum_probs=144.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||+++++++|+++|++||+|+.|.|++++.+++++|||||+|.++++|++||+ +.+.|.++.|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999999999999999999999999999998 6789999999999886
Q ss_pred hhhhhcccCCCC-------C-CC-CCCCCCCCccccceeEecCCCCC--C--------CHHHHHHHhhccCceeeeEEee
Q 015040 82 SREEQHNSRSGN-------F-NS-GRGSEGGGYFKTKKIFVGGLPPT--L--------TEDGFRQYFENYGHVTDVVVMY 142 (414)
Q Consensus 82 ~~~~~~~~~~~~-------~-~~-~~~~~~~~~~~~~~lfV~nLp~~--~--------te~~L~~~F~~~G~I~~v~i~~ 142 (414)
............ . .. ..........++++|+|.||... + ..++|+++|++||.|+.|+|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543222111100 0 00 00001112235788999999632 1 2367999999999999999987
Q ss_pred cC---CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 143 DQ---NTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 143 d~---~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+. .+...+|++||+|+++++|++||+.|+ ..|++++|.|.+..
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 53 345568999999999999999999999 69999999999864
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.4e-25 Score=199.81 Aligned_cols=167 Identities=23% Similarity=0.455 Sum_probs=151.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...+.|.|.-||..+|+|||+.+|...|+|++|++++||.|+.+.||+||.|.++++|++|+. +.-.+..|.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345668999999999999999999999999999999999999999999999999999999999 677899999999999
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
.+..+..+ ...|||.+||..+|..||+++|++||.|..-+|+.|+.|+.+||.+||.|+..
T Consensus 119 RPSs~~Ik-------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSSDSIK-------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCChhhhc-------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 87665443 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-Cc--cCCeEEEEEecCCCC
Q 015040 161 DAVDNVLQKVF-HE--LNGKLVEVKRALPKD 188 (414)
Q Consensus 161 e~a~~Al~~~~-~~--i~gr~i~V~~a~p~~ 188 (414)
++|++||+.++ +. =...+|.|++|..+.
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999999 32 334799999987554
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=7.8e-25 Score=201.76 Aligned_cols=148 Identities=27% Similarity=0.558 Sum_probs=135.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCC--CCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKH--TIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~--~i~gr~l~v~~a~~~ 83 (414)
-+|||+|||.++++.+|+.+|++||+|++|.|+++ |+||..+++..|+.||.|.| +|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 99999999999999999665 899999999988765
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHH
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAV 163 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a 163 (414)
.. .+.+|+|+||.+.|+.+||++.|++||+|.+++|++| |+||.|+..++|
T Consensus 75 sk---------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda 125 (346)
T KOG0109|consen 75 SK---------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDA 125 (346)
T ss_pred CC---------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccch
Confidence 21 4678999999999999999999999999999999955 999999999999
Q ss_pred HHHHHHcC-CccCCeEEEEEecCCCCCC
Q 015040 164 DNVLQKVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 164 ~~Al~~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
..||..|+ .+|.+++++|..+..+-+.
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred HHHHhcccccccccceeeeeeecccccc
Confidence 99999999 6999999999998776544
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=2.8e-22 Score=206.65 Aligned_cols=177 Identities=24% Similarity=0.401 Sum_probs=139.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
.++|||+|||.+++|++|+++|++||+|+.|.|++++.++++++||||+|.++++|++||+ +...|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999999999999999999999999999998 66789999999999653
Q ss_pred hhhhcccC------------------------------CC------------------------CCC--CC---------
Q 015040 83 REEQHNSR------------------------------SG------------------------NFN--SG--------- 97 (414)
Q Consensus 83 ~~~~~~~~------------------------------~~------------------------~~~--~~--------- 97 (414)
........ .. ... ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 00 000 00
Q ss_pred ------CCCCCCCccccceeEecCCCCCCC----------HHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 98 ------RGSEGGGYFKTKKIFVGGLPPTLT----------EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 98 ------~~~~~~~~~~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
...........++|+|.||....+ ++||+++|++||.|++|.|+.. ...|++||+|++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 000000124567899999955444 3689999999999999999633 35799999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+|++|++.|+ ..|+++.|+|.+..
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999999 69999999999864
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.1e-23 Score=197.27 Aligned_cols=174 Identities=21% Similarity=0.466 Sum_probs=149.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
.|+|||+.|.+++.|+.|+..|..||+|++|.+..|+.|.++|+||||||+-+|.|..|++ |...+.+|.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999 67799999999975432
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
-...+..-.. .+.+.....+|||..++.+++|+||+.+|+.||+|+.|.+.+++.+..+|||+||||++..+
T Consensus 193 mpQAQpiID~--------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 193 MPQAQPIIDM--------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred CcccchHHHH--------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 1110000000 00001135789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEecCC
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
...||..+| .+|.+.-|+|-.+..
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hHHHhhhcchhhcccceEecccccC
Confidence 999999999 699999999977643
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.1e-22 Score=181.13 Aligned_cols=184 Identities=25% Similarity=0.395 Sum_probs=148.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC--CCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI--DGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i--~gr~l~v~~ 79 (414)
....|||.+||+.+|..||+++|++||.|..-+|+.|..|+.+||.+||.|+..++|++||+ +.+.- .-.+|.||+
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999 55444 446788888
Q ss_pred chhhhhhcccCC--------C-------CCCC----------------CCCC-------------CCCCccccceeEecC
Q 015040 80 ALSREEQHNSRS--------G-------NFNS----------------GRGS-------------EGGGYFKTKKIFVGG 115 (414)
Q Consensus 80 a~~~~~~~~~~~--------~-------~~~~----------------~~~~-------------~~~~~~~~~~lfV~n 115 (414)
+........... . .... ...+ .........+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 764322111000 0 0000 0000 000112347899999
Q ss_pred CCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 116 LPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 116 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
|.++++|.-|.++|.+||.|+.|+|++|..|.++|||+||.+.+-++|..||..++ ..|.+|.|.|.+...+
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999 6999999999997654
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-21 Score=193.18 Aligned_cols=152 Identities=26% Similarity=0.497 Sum_probs=138.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
..|||+ +++||..|.++|+++++|++|+|++|. | +-+||||.|.++++|++||+ +-..+.+++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 7 99999999999999999999 556999999999988743
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHH
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAV 163 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a 163 (414)
.. .|||.||+++++..+|.++|+.||.|.+|++.+|.+- +++| ||+|+++++|
T Consensus 76 ~~------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a 128 (369)
T KOG0123|consen 76 PS------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESA 128 (369)
T ss_pred Cc------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHH
Confidence 31 1999999999999999999999999999999999875 8999 9999999999
Q ss_pred HHHHHHcC-CccCCeEEEEEecCCCCCC
Q 015040 164 DNVLQKVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 164 ~~Al~~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
++||++++ ..+.+++|.|....++..+
T Consensus 129 ~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 129 KKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 99999999 5889999999888776654
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=3.2e-22 Score=198.79 Aligned_cols=180 Identities=26% Similarity=0.471 Sum_probs=154.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
|++.+|||+--|+..+++.+|.+||+.+|+|.+|.|+.|+.+.++|+.|||+|.|.+.+..||. ....+.+.+|.|+..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 5788999999999999999999999999999999999999999999999999999999999998 778999999999877
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
...+............ .. ...+...|+|+||+++++|++|+.+|+.||.|..|.+++|.+|+++|||+||+|.+.
T Consensus 256 Eaeknr~a~~s~a~~~--k~---~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRAANASPALQG--KG---FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHHHhccccccc--cc---cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 6555442211111110 00 011233499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 161 DAVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
++|++|++.++ .+|.|+.|+|.....
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeee
Confidence 99999999999 699999999886543
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.7e-21 Score=177.73 Aligned_cols=187 Identities=24% Similarity=0.437 Sum_probs=150.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCC---CCCC--ceeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKH---TIDG--RPVEAK 78 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~---~i~g--r~l~v~ 78 (414)
+.++|||+-|.+.-.|||++.+|..||+|++|.|++.+ ++.+||||||+|.+..+|..||...| ++.+ ..|.||
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67999999999999999999999999999999999986 58999999999999999999998433 3333 456777
Q ss_pred echhhhhhcccC--------------------------------------------------------------------
Q 015040 79 RALSREEQHNSR-------------------------------------------------------------------- 90 (414)
Q Consensus 79 ~a~~~~~~~~~~-------------------------------------------------------------------- 90 (414)
++...++...++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 766544331000
Q ss_pred -C-CCCC-CCCC---------------------------------------------C----------------------
Q 015040 91 -S-GNFN-SGRG---------------------------------------------S---------------------- 100 (414)
Q Consensus 91 -~-~~~~-~~~~---------------------------------------------~---------------------- 100 (414)
. .... .... .
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 0000 0000 0
Q ss_pred ---------------------CCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 101 ---------------------EGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 101 ---------------------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
.+..-.+.+.|||-.||.+..+.||.++|-.||.|++.+|..|+.|..+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00001234899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CccCCeEEEEEecCCCCCCC
Q 015040 160 EDAVDNVLQKVF-HELNGKLVEVKRALPKDASG 191 (414)
Q Consensus 160 ~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~~ 191 (414)
+.++++||..|| ..|.=++|+|...+||+.++
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 69999999999999988764
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.4e-21 Score=178.70 Aligned_cols=140 Identities=24% Similarity=0.497 Sum_probs=121.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeech
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRAL 81 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~ 81 (414)
+.+.|||||+||+.++||+.|..||.+.|+|+.|+|+.+ +|+|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 357899999999999999999999999999999999876 34565555
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
....+.+... .....+||+.|...++-|+|++.|.+||+|.+++|++|..|.++|||+||.|.+.+
T Consensus 50 ~p~nQsk~t~--------------~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 50 APGNQSKPTS--------------NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred CcccCCCCcc--------------ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 4422222110 13567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+|+.||+.|+ .-|..|.|+..||..|.
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCc
Confidence 9999999999 68899999999998776
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=197.75 Aligned_cols=173 Identities=27% Similarity=0.432 Sum_probs=145.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTT---GRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~t---g~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
.++|||.||+++++.++|+++|.+.|.|.+|.|...++. -.+.||+||+|.++++|++|++ +.+.|+++.|.|+.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 445999999999999999999999999999988775432 1366999999999999999999 46899999999999
Q ss_pred chhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 80 ALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
+..+...... . ........++|+|.|||+.++..+|+++|..||.|++|+|++......++|||||+|.+
T Consensus 595 S~~k~~~~~g------K----~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 595 SENKPASTVG------K----KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred ccCccccccc------c----ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 8822211111 0 00011135789999999999999999999999999999999886667789999999999
Q ss_pred HHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 160 EDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 160 ~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
+.+|.+|++.|. +.|.+|+|.++||+..
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccc
Confidence 999999999998 6899999999999754
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=1.6e-20 Score=184.60 Aligned_cols=171 Identities=25% Similarity=0.437 Sum_probs=138.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+...|-+.+|||++|++||.+||+.+ .|+++++.+ .++++.|-|||||+++|++++||+ +...+..+-|+|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 34567889999999999999999998 577755554 579999999999999999999999 67789999999998876
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
.+.....+...... ......|.+..||+.|||+||.+||+-.-.|.+..++.....+++.+.|||.|++.+.
T Consensus 86 ~e~d~~~~~~g~~s--------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 86 AEADWVMRPGGPNS--------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccccccCCCCCC--------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 65433222111111 1246789999999999999999999988777764434444457799999999999999
Q ss_pred HHHHHHHcCCccCCeEEEEEecC
Q 015040 163 VDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 163 a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
|++||+++.+.|..|-|+|-++.
T Consensus 158 ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 158 AEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHHHHHHhhccceEEeehhH
Confidence 99999999999999999998764
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.7e-19 Score=155.38 Aligned_cols=158 Identities=20% Similarity=0.407 Sum_probs=127.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..+++|||+|||.++.|.+|+++|-+|+.|.+|.|...+ .+..||||+|+++.+|+.||. +.-.+++..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 468999999999999999999999999999999986543 456799999999999999999 778999999999987
Q ss_pred hhhhhhcccCCCCCCC--------CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceE
Q 015040 81 LSREEQHNSRSGNFNS--------GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGF 152 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~ 152 (414)
..-....... ..... ......+......+|.|..||.+.+|+|||+++.+-|.|....+.+| +.
T Consensus 81 rggr~s~~~~-G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~ 152 (241)
T KOG0105|consen 81 RGGRSSSDRR-GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GV 152 (241)
T ss_pred cCCCcccccc-cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cc
Confidence 6543111111 10000 00011122234578999999999999999999999999999999876 37
Q ss_pred EEEEeCCHHHHHHHHHHcC
Q 015040 153 GFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 153 aFVeF~~~e~a~~Al~~~~ 171 (414)
+.|+|.+.|+++-||.+|+
T Consensus 153 GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeeehhhHHHHHHhhc
Confidence 8999999999999999998
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2.3e-19 Score=156.00 Aligned_cols=85 Identities=33% Similarity=0.621 Sum_probs=80.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||+++||++|+++|++||+|++|+|++|++|+++++||||+|+++++|++||+.++ ++|++++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999988 79999999999998
Q ss_pred CCCCCC
Q 015040 186 PKDASG 191 (414)
Q Consensus 186 p~~~~~ 191 (414)
++....
T Consensus 113 ~~~~~~ 118 (144)
T PLN03134 113 DRPSAP 118 (144)
T ss_pred cCCCCC
Confidence 776543
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2e-19 Score=178.68 Aligned_cols=171 Identities=23% Similarity=0.466 Sum_probs=149.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
++|...|||.||++++|..+|.++|+.||+|++|+|+.+++ + +|+| ||+|+++++|++||+ +...+.+++|.|-.
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 35666799999999999999999999999999999999864 4 9999 999999999999999 77899999999998
Q ss_pred chhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 80 ALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
...+++....... .. .....++|.+++.++++++|+++|..+++|+.+.|+.+.. +++++|+||+|++
T Consensus 150 ~~~~~er~~~~~~-~~----------~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 150 FERKEEREAPLGE-YK----------KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFEN 217 (369)
T ss_pred ccchhhhcccccc-hh----------hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecC
Confidence 8887776543322 11 1456789999999999999999999999999999999977 4599999999999
Q ss_pred HHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 160 EDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 160 ~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
.++|+.|++.++ ..+.+..+.|..+..+
T Consensus 218 ~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 218 PEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hhHHHHHHHhccCCcCCccceeecccccc
Confidence 999999999999 5788899999887663
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3.5e-19 Score=172.16 Aligned_cols=183 Identities=24% Similarity=0.436 Sum_probs=146.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcC---CCC--CCceeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK---HTI--DGRPVEAK 78 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~i--~gr~l~v~ 78 (414)
++++|||+.|++.+||+||+++|.+||.|++|.|+++. .+.+||||||+|.+.|.|..||+.. +++ ...+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999995 5899999999999999999999832 344 45678898
Q ss_pred echhhhhhcccCC-------------------------------------------------------------------
Q 015040 79 RALSREEQHNSRS------------------------------------------------------------------- 91 (414)
Q Consensus 79 ~a~~~~~~~~~~~------------------------------------------------------------------- 91 (414)
++.++++...++.
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 8875543210000
Q ss_pred ----------CCCCC-------C-----CC-------CCC----------------------------------------
Q 015040 92 ----------GNFNS-------G-----RG-------SEG---------------------------------------- 102 (414)
Q Consensus 92 ----------~~~~~-------~-----~~-------~~~---------------------------------------- 102 (414)
...+. . .. ...
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 00000 0 00 000
Q ss_pred ---------------------------------------------------------CCccccceeEecCCCCCCCHHHH
Q 015040 103 ---------------------------------------------------------GGYFKTKKIFVGGLPPTLTEDGF 125 (414)
Q Consensus 103 ---------------------------------------------------------~~~~~~~~lfV~nLp~~~te~~L 125 (414)
..-.....|||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 00011167999999999999999
Q ss_pred HHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 126 RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 126 ~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
...|..||.|+..++..|+.|+-+|+|.||.|++..+|.+||..|+ ..|..++++|...+.+
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 9999999999999999999999999999999999999999999999 6899999999886554
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=2.1e-17 Score=172.03 Aligned_cols=79 Identities=14% Similarity=0.437 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++||+ +..+|.++.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999999999999999999999999999999 6779999999998766
Q ss_pred h
Q 015040 82 S 82 (414)
Q Consensus 82 ~ 82 (414)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=4.5e-17 Score=146.70 Aligned_cols=173 Identities=17% Similarity=0.337 Sum_probs=136.3
Q ss_pred CCEEEEcCCCCCCcHHHHHH----HhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 5 EGKLFIGGIAWDTTEGTLRD----YFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e----~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
+.||||.||+..+..++|+. +|++||+|++|.+.+ |.+.+|-|||+|++.+.|..|+. +...+.+++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999999 999999999998875 56899999999999999999999 5678899999999
Q ss_pred echhhhhhcccCCCC------C-------------C-----------CCCCC-CCCCccccceeEecCCCCCCCHHHHHH
Q 015040 79 RALSREEQHNSRSGN------F-------------N-----------SGRGS-EGGGYFKTKKIFVGGLPPTLTEDGFRQ 127 (414)
Q Consensus 79 ~a~~~~~~~~~~~~~------~-------------~-----------~~~~~-~~~~~~~~~~lfV~nLp~~~te~~L~~ 127 (414)
+|..+.+........ . . ..... ......+...||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 988665443321100 0 0 00000 012245678999999999999999999
Q ss_pred HhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC-CeEEEEEecC
Q 015040 128 YFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN-GKLVEVKRAL 185 (414)
Q Consensus 128 ~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~-gr~i~V~~a~ 185 (414)
+|++|.-.++|+++..+ ++.|||+|.++..+..|.+.+. ..|- ...+.|.+++
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999998643 4699999999988888888887 2333 7778887764
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=4.3e-17 Score=157.77 Aligned_cols=184 Identities=22% Similarity=0.346 Sum_probs=145.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFT-RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~-~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..|.|||.|||+++..++|+++|+ +.|+|+-|.++.|. ++++|+||.|||+++|.+++|++ +++++.+|+|.||..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456799999999999999999997 67899999999984 79999999999999999999999 889999999999875
Q ss_pred hhhhhhcccC--------------------------------------CCC--------CCCCC----------------
Q 015040 81 LSREEQHNSR--------------------------------------SGN--------FNSGR---------------- 98 (414)
Q Consensus 81 ~~~~~~~~~~--------------------------------------~~~--------~~~~~---------------- 98 (414)
...+..+..+ .+. .....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 5422110000 000 00000
Q ss_pred ----CCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Cc
Q 015040 99 ----GSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HE 173 (414)
Q Consensus 99 ----~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~ 173 (414)
+...-..+...++||.||...+..+.|++.|.-.|.|+.|.+-.|++ +.+++||.|+|+++-++.+||.+++ .-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCC
Confidence 00000123457899999999999999999999999999999999988 5899999999999999999999999 57
Q ss_pred cCCeEEEEEecCCCCC
Q 015040 174 LNGKLVEVKRALPKDA 189 (414)
Q Consensus 174 i~gr~i~V~~a~p~~~ 189 (414)
+.+++..+....-.++
T Consensus 281 ~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 281 LFDRRMTVRLDRIPDR 296 (608)
T ss_pred Cccccceeeccccccc
Confidence 7778877776544433
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=2.4e-17 Score=143.35 Aligned_cols=82 Identities=40% Similarity=0.771 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|+.++.|+++|+||||+|+++++|++||+ +.++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 357899999999999999999999999999999999999999999999999999999999998 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7543
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.2e-17 Score=148.27 Aligned_cols=163 Identities=21% Similarity=0.420 Sum_probs=126.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
.+|||++||+.+.+++|++||..|+.|.+|.++. +|+||+|.++.+|+.|+. +..+|.+..|.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999998765 499999999999999998 556777777777776643
Q ss_pred hhhcccCCCCCCCC-CCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 84 EEQHNSRSGNFNSG-RGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
.-............ ...........+.|+|.+|+..+.+++|+++|.++++++.+.+. +.++||+|+++++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 22221110000000 11111223456789999999999999999999999999555552 4589999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEec
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
|++||++++ .+|.+++|++...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999 6999999999544
No 40
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=143.38 Aligned_cols=79 Identities=41% Similarity=0.815 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc-CCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD-KHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~i~gr~l~v~~a~~ 82 (414)
.-+||||++|+|++.+|.|+++|++||+|++++|+.|+.|+|+|||+||+|+|.|+|++|+++ ...|++|+..++.+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 347899999999999999999999999999999999999999999999999999999999994 5799999999988765
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.9e-16 Score=143.40 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=84.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
++-+||||..|+.+++|.+|+++|++||+|+.|+|+.|+.|++++|||||||+++.++++|.+..+ .+|+++.|.|++.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 678999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred CCCCCCCCCC
Q 015040 185 LPKDASGGGR 194 (414)
Q Consensus 185 ~p~~~~~~~~ 194 (414)
..+....+-.
T Consensus 179 RgRTvkgW~P 188 (335)
T KOG0113|consen 179 RGRTVKGWLP 188 (335)
T ss_pred cccccccccc
Confidence 8888777644
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=1.3e-15 Score=152.02 Aligned_cols=173 Identities=21% Similarity=0.439 Sum_probs=128.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhhh
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSRE 84 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~~ 84 (414)
.|||+||.++++|++|+.+|+.||.|+.|.++.+..|+++|+|+||+|.+.++|++|++ |..+|.++.|+|-....+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 38999999999999999999999999999999998899999999999999999999988 6689999999885433322
Q ss_pred hhcccCC-----C------------------------C-----------------------CCC-CCCCCCCCc------
Q 015040 85 EQHNSRS-----G------------------------N-----------------------FNS-GRGSEGGGY------ 105 (414)
Q Consensus 85 ~~~~~~~-----~------------------------~-----------------------~~~-~~~~~~~~~------ 105 (414)
....... . . .+. .........
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 2111000 0 0 000 000000011
Q ss_pred -cccceeEecCC--CCCCC--------HHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Cc
Q 015040 106 -FKTKKIFVGGL--PPTLT--------EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HE 173 (414)
Q Consensus 106 -~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~ 173 (414)
.++.++.|.|+ |.+.| +||+++.+.+||.|.+|.|-+. +-|+.||.|.++++|.+|+.+|| .-
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhh
Confidence 34455566665 22222 2678888899999988777432 24899999999999999999999 58
Q ss_pred cCCeEEEEEec
Q 015040 174 LNGKLVEVKRA 184 (414)
Q Consensus 174 i~gr~i~V~~a 184 (414)
|.+++|++++-
T Consensus 515 F~gr~Ita~~~ 525 (549)
T KOG0147|consen 515 FAGRMITAKYL 525 (549)
T ss_pred hccceeEEEEe
Confidence 99999999874
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.3e-15 Score=150.66 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=78.8
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
.....++|||.+||+++||++|+++|++|++|++|+|++|+.++++|+||||+|+++++|++||++|+ ++|.+++|+|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred ecCCC
Q 015040 183 RALPK 187 (414)
Q Consensus 183 ~a~p~ 187 (414)
+++|.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 44
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.4e-15 Score=149.27 Aligned_cols=183 Identities=25% Similarity=0.346 Sum_probs=130.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEec--CCCCCcce---EEEEEeCCHHHHHHHHHcCCC-CCCcee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRD--KTTGRPRG---FGFVVFSDPSVLDQVLQDKHT-IDGRPV 75 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~--~~tg~~kG---~aFV~F~~~e~A~~Al~~~~~-i~gr~l 75 (414)
..-+++|||+.|||+++|++|...|..||.|..-+-.+. +.--.+|| |+|+.|+++.++++.|..-++ ....-|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 345899999999999999999999999998663332221 11224677 999999999999998873221 111112
Q ss_pred eee--echhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceE
Q 015040 76 EAK--RALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGF 152 (414)
Q Consensus 76 ~v~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~ 152 (414)
+|. ..+.++.+...+.......-.......++.+||||+.||.-++.++|..+|+ .||.|..|-|-+|++-+.+||-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 221 1122222222222222222222334456899999999999999999999998 7999999999999988999999
Q ss_pred EEEEeCCHHHHHHHHHHcCCc----cCCeEEEEEec
Q 015040 153 GFITFETEDAVDNVLQKVFHE----LNGKLVEVKRA 184 (414)
Q Consensus 153 aFVeF~~~e~a~~Al~~~~~~----i~gr~i~V~~a 184 (414)
+-|+|.+..+-.+||++...+ --.++|+|+.-
T Consensus 416 GRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred ceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 999999999999999886632 23467887653
No 45
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=3.1e-15 Score=141.20 Aligned_cols=163 Identities=25% Similarity=0.497 Sum_probs=120.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
.++|||+|||+++++++|+++|.+|++|..|.|+.++.++++++||||+|.++++|+.|++ +...|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999899999999999999999999999 55799999999999653
Q ss_pred ----hhhhccc-CCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe
Q 015040 83 ----REEQHNS-RSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF 157 (414)
Q Consensus 83 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF 157 (414)
+...... .....................+++.+++..+++.++..+|..++.+..+.+...........+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111100 00000011111222334678899999999999999999999999998777776655443333444444
Q ss_pred CCHHHHHHHH
Q 015040 158 ETEDAVDNVL 167 (414)
Q Consensus 158 ~~~e~a~~Al 167 (414)
.....+..++
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 3333333333
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=5.7e-15 Score=151.16 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=129.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.+.|+|+|||..+.+++|.++|..||+|..|.+.+.-. -++|+|.++.+|.+|+. .-..+...++-+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 35678999999999999999999999999999995543211 59999999999999998 32344444454444
Q ss_pred chhhhhhcc---------cCCC----------CCCCC-----C----CC--CC-CCccccceeEecCCCCCCCHHHHHHH
Q 015040 80 ALSREEQHN---------SRSG----------NFNSG-----R----GS--EG-GGYFKTKKIFVGGLPPTLTEDGFRQY 128 (414)
Q Consensus 80 a~~~~~~~~---------~~~~----------~~~~~-----~----~~--~~-~~~~~~~~lfV~nLp~~~te~~L~~~ 128 (414)
+........ .... ..+.. . .. .. ......++|||.||++++|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 332211100 0000 00000 0 00 00 01112234999999999999999999
Q ss_pred hhccCceeeeEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 129 FENYGHVTDVVVMYDQNTQ---RPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 129 F~~~G~I~~v~i~~d~~tg---~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
|.+.|.|+.|.|.+.++.. .+.||+||+|.++++|++|+++|+ +.|+++.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988765422 245999999999999999999999 89999999999987
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.6e-15 Score=136.14 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=79.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
++..+|.|.||+++++|++|+++|.+||.|.+|.|.+|++|+.+||||||.|++.++|.+||+.|+ +-++...|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 467889999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9973
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.3e-15 Score=136.11 Aligned_cols=80 Identities=33% Similarity=0.612 Sum_probs=76.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
..++|||++|+|+++.|+|+++|++||+|++++|+.|+.|+++|||+||+|.|.|+|.+|++..+..|++|+..++.|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988743
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=4.1e-14 Score=126.71 Aligned_cols=163 Identities=18% Similarity=0.304 Sum_probs=112.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC---Cceeeee
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMR-DKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID---GRPVEAK 78 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~-~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~---gr~l~v~ 78 (414)
-|||||.+||.|+...||..+|..|--.+.+.|.. ++.....+-++||+|.+..+|.+|++ +...|+ ...|.++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 69999999999999999999999997666665544 44445567899999999999999998 555554 3455555
Q ss_pred echhhhhhcccCCCC------------CCC-CC---------------------------CCC-----------------
Q 015040 79 RALSREEQHNSRSGN------------FNS-GR---------------------------GSE----------------- 101 (414)
Q Consensus 79 ~a~~~~~~~~~~~~~------------~~~-~~---------------------------~~~----------------- 101 (414)
.++...+........ .+. .+ ...
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 554332211111000 000 00 000
Q ss_pred ----------CCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 102 ----------GGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 102 ----------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
......+.+|||.||..+|||++|+.+|+.|--...++|... .+ -..|||+|++.+.|..||..+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhh
Confidence 000112368999999999999999999999977766666422 12 3479999999988888887775
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=7e-14 Score=134.91 Aligned_cols=172 Identities=16% Similarity=0.281 Sum_probs=132.4
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 5 EGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 5 ~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
++.|.|.||-++ +|++.|..+|.-||+|..|+|+.++.+ .|+|.+.|...|+-|++ +++.|.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 588999999655 999999999999999999999998753 89999999999999999 8899999999998877
Q ss_pred hhhhhcccCCCCC---------------CC-CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCce-eeeEEeecC
Q 015040 82 SREEQHNSRSGNF---------------NS-GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHV-TDVVVMYDQ 144 (414)
Q Consensus 82 ~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~ 144 (414)
....+.+...... .. ..........++.+|++.|+|.+++||||+++|...|-. +..++.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 5544333211110 00 001112234678899999999999999999999887755 444443
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC-eEEEEEecCC
Q 015040 145 NTQRPRGFGFITFETEDAVDNVLQKVF-HELNG-KLVEVKRALP 186 (414)
Q Consensus 145 ~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g-r~i~V~~a~p 186 (414)
.+.+-+|++.++++|+|..|+..++ +.+.. ..|+|++++.
T Consensus 449 --~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 --QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2224499999999999999988887 66654 5999998764
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=1.2e-13 Score=131.01 Aligned_cols=176 Identities=15% Similarity=0.296 Sum_probs=130.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCce
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVS--------QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRP 74 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~--------~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~ 74 (414)
+..|||.+||.++|.+++.++|.+||.|. .|+|.++. .+..||=|+|.|-..++++.|++ +...|.++.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45599999999999999999999999775 47888875 49999999999999999999999 667899999
Q ss_pred eeeeechhhhhhcccCCCCCC-------------------CCCCCCCCCccccceeEecCCC----CCCC-------HHH
Q 015040 75 VEAKRALSREEQHNSRSGNFN-------------------SGRGSEGGGYFKTKKIFVGGLP----PTLT-------EDG 124 (414)
Q Consensus 75 l~v~~a~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~lfV~nLp----~~~t-------e~~ 124 (414)
|+|++|+-...-......... .............++|.|.||= +..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999887632211000000000 0000011112245778888872 2223 356
Q ss_pred HHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 125 L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
|++..++||.|.+|.|... .+.|.+.|.|.+.++|+.||+.|+ .-|.+|+|+.+...
T Consensus 293 l~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 6677889999999998743 357899999999999999999999 68999999987643
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=1.8e-14 Score=150.06 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=96.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF--GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~--G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.++|||+|||++++||+|+++|++| |+|++|++++ +||||+|+++++|++||+ +.++|+++.|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 499999999999999998 678999999999999
Q ss_pred hhhhhhcccCC--------CCC-CCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCce
Q 015040 81 LSREEQHNSRS--------GNF-NSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHV 135 (414)
Q Consensus 81 ~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I 135 (414)
++......... ... ...............++++.+|+++++++.|.++|..++.|
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 87654321110 000 00011111222357899999999999999999999988763
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-14 Score=131.14 Aligned_cols=81 Identities=25% Similarity=0.440 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.|+++|-|.|||.+++|++|+++|.+||.|..|.|.+++.|+.+||||||.|.+.++|.+||. +.+-++...|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 478899999999999999999999999999999999999999999999999999999999999 778999999999999
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.8e-14 Score=107.66 Aligned_cols=69 Identities=29% Similarity=0.817 Sum_probs=65.3
Q ss_pred eEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
|||.|||+++|+++|+++|++||.|+.+.|+.+ .+++.+++|||+|+++++|++|++.++ ..+++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999999888 699999885
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.6e-14 Score=143.40 Aligned_cols=181 Identities=20% Similarity=0.356 Sum_probs=137.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||++||..+++++++|+++.|+++....++.+..++-+|+|||.+|.++.....|+. +...+.+++|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 46789999999999999999999999999999999999999999999999999999999999 6778889999998887
Q ss_pred hhhhhcccCCCCCCC-----CCCCCCCCccccceeEecCC--CCCC-CH-------HHHHHHhhccCceeeeEEeecC--
Q 015040 82 SREEQHNSRSGNFNS-----GRGSEGGGYFKTKKIFVGGL--PPTL-TE-------DGFRQYFENYGHVTDVVVMYDQ-- 144 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lfV~nL--p~~~-te-------~~L~~~F~~~G~I~~v~i~~d~-- 144 (414)
.............+. .....+..-.++..|.+.|+ |.++ .+ |+|+..+.+|+.|+.|.|.++-
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 665554433221110 01111222234555555554 1111 22 3345556789999999998872
Q ss_pred -CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 145 -NTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 145 -~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+..-..|..||||.+.+++++|+++|. .+|.+|+|...+-
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 223346789999999999999999999 7999999998874
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.9e-14 Score=106.83 Aligned_cols=68 Identities=32% Similarity=0.787 Sum_probs=63.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
|||+|||+++|+++|+++|++||+|+.|.|+.+ .+++.+++|||+|+++++|++|++ +.+.+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 678899999999999999999999 66788887764
No 57
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.52 E-value=1.7e-12 Score=128.32 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=132.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ-VVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~-v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
....|-+.+||+.|||+||.+||+-.-.|.+ |.++.++ ..++.+-|||.|++.++|++||+ +++.|..+-|+|.++.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 3568999999999999999999999877776 4445554 56799999999999999999999 8889999999998776
Q ss_pred hhhhhcccCC--------CC--------------------C---------------------CC---------------C
Q 015040 82 SREEQHNSRS--------GN--------------------F---------------------NS---------------G 97 (414)
Q Consensus 82 ~~~~~~~~~~--------~~--------------------~---------------------~~---------------~ 97 (414)
..+....... .. . .. .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 5443321100 00 0 00 0
Q ss_pred C---CCCCC-------CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHH
Q 015040 98 R---GSEGG-------GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167 (414)
Q Consensus 98 ~---~~~~~-------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al 167 (414)
. ..... .......++...||+..++.+|.++|...-.+ .|.|... ++++..|-|+|+|.+.++|..||
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 0 00000 00112667889999999999999999976655 5555444 45889999999999999999999
Q ss_pred HHcCCccCCeEEEEEec
Q 015040 168 QKVFHELNGKLVEVKRA 184 (414)
Q Consensus 168 ~~~~~~i~gr~i~V~~a 184 (414)
.+....+..+-|++-..
T Consensus 339 skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLN 355 (510)
T ss_pred ccCCcccCcceeeeccc
Confidence 99988888888887654
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.5e-14 Score=117.57 Aligned_cols=79 Identities=22% Similarity=0.497 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+++||||+||++-++||+|.|+|.++|+|..|.+=.|+.+..+.|||||+|-+.++|+.||+ +...++.++|.+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 468999999999999999999999999999999999999999999999999999999999999 788999999999875
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=6.9e-14 Score=133.84 Aligned_cols=182 Identities=18% Similarity=0.262 Sum_probs=135.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccC----CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFG----DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G----~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
.-.|.+.+||+++++.||.+||.+-- .++.|.+++. .++++.|-|||.|..+++|+.||. ++..|.-|-|++.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45677889999999999999996432 3556666664 468999999999999999999999 66778888899887
Q ss_pred chhhhhhcccCCCC---CCC--C-------CCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCc-eee--eEEeecC
Q 015040 80 ALSREEQHNSRSGN---FNS--G-------RGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGH-VTD--VVVMYDQ 144 (414)
Q Consensus 80 a~~~~~~~~~~~~~---~~~--~-------~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~--v~i~~d~ 144 (414)
+...+-++...... ... . ....-+......+|.+.+||++.+.|||.+||..|-. |+. |.++...
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 76655443221111 000 0 0001111223678999999999999999999998865 333 6666665
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCCeEEEEEecCCCC
Q 015040 145 NTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKRALPKD 188 (414)
Q Consensus 145 ~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~gr~i~V~~a~p~~ 188 (414)
+ +++.|-|||+|.++|+|.+|..++++ .+..|.|+|-.+...+
T Consensus 320 q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 320 Q-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred C-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 4 89999999999999999999999995 5558999997665433
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.3e-13 Score=104.52 Aligned_cols=69 Identities=28% Similarity=0.728 Sum_probs=64.1
Q ss_pred eEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
|+|.|||+++++++|+++|+.|+.|..|+++.+++ ++++++|||+|.++++|++|++.++ ..|+++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999999 799999885
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1e-13 Score=105.19 Aligned_cols=68 Identities=38% Similarity=0.746 Sum_probs=61.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
|||+|||+++++++|+++|+.++.|+.|.++.++. ++++++|||+|.++++|++|++ +.+.|++++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 8999999999999999999999 44788888874
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1e-13 Score=130.47 Aligned_cols=83 Identities=25% Similarity=0.550 Sum_probs=75.5
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
..+..++|+|.|||+..-|.||+.+|++||.|.+|.|+... .-+|||+||+|++.++|++|-++|+ ..+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34567999999999999999999999999999999999763 4579999999999999999999999 79999999999
Q ss_pred ecCCCC
Q 015040 183 RALPKD 188 (414)
Q Consensus 183 ~a~p~~ 188 (414)
.|+++-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 987654
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=5.8e-14 Score=124.39 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=77.6
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
......+|.|-||.+.++.++|+.+|++||.|-+|.|+.|+.|.+++|||||.|.+..+|+.||++|+ .+|+++.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33467889999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred ecC
Q 015040 183 RAL 185 (414)
Q Consensus 183 ~a~ 185 (414)
+|+
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 886
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.8e-14 Score=114.40 Aligned_cols=78 Identities=21% Similarity=0.467 Sum_probs=75.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+++|||+||++-++||+|.++|+++|+|+.|.+-.|+.+..+-|||||+|-+.++|+.||+.++ ..|+.++|.|+|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999 7999999999986
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2e-13 Score=127.49 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
...++|||+|||++++|++|+++|+.||+|++|.|++++. .++||||+|+++++|+.||. +...|.++.|+|.++.
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 3478999999999999999999999999999999998864 46899999999999999999 7889999999999876
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=2.9e-13 Score=126.37 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=69.7
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
.++|||+|||+.+||++|+++|+.||+|++|+|+.|++ .++||||+|+++++|++||.+....|.+++|+|+++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998865 47899999999999999997555899999999999863
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=5.7e-13 Score=122.55 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
|..+-.+|||+||++++||++|++||+.||+|++|+|+++. +.++||||+|+++++|+.||. +...|.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 67778999999999999999999999999999999999985 445799999999999999999 88999999999988
Q ss_pred chhhh
Q 015040 80 ALSRE 84 (414)
Q Consensus 80 a~~~~ 84 (414)
+....
T Consensus 78 ~~~y~ 82 (243)
T PLN03121 78 WGQYE 82 (243)
T ss_pred Ccccc
Confidence 76544
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=111.66 Aligned_cols=86 Identities=23% Similarity=0.416 Sum_probs=80.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.....|||.++++.+||++|.+.|..||+|+.|.+..|+.|+..||||+|+|++.+.|++||+.++ .+|.+..|.|+|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 7999999999998
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
..+.+..
T Consensus 150 Fv~gp~~ 156 (170)
T KOG0130|consen 150 FVKGPER 156 (170)
T ss_pred EecCCcc
Confidence 7665544
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.9e-12 Score=123.40 Aligned_cols=77 Identities=14% Similarity=0.440 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
-.+|||..+.++++|+||+..|+.||+|+.|.+.+.+.+..+|||+||||.+..+...||. |...+.+.-|+|-++.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3689999999999999999999999999999999999999999999999999999999998 6667888888875543
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.9e-13 Score=115.86 Aligned_cols=78 Identities=23% Similarity=0.482 Sum_probs=71.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
-.++|||+||+..+++.||+.+|.+||+|..|.|... +.|||||||+++.+|+.|+..|+ .+|.+..|+|++.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3688999999999999999999999999999999853 57899999999999999999999 79999999999986
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.41 E-value=1.2e-12 Score=126.39 Aligned_cols=174 Identities=14% Similarity=0.279 Sum_probs=127.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH----cCCCCCCceeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ----DKHTIDGRPVEA 77 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~----~~~~i~gr~l~v 77 (414)
...++.|.|++|||+++|+||.+++.+||.|+.+.+.+-++ -|||||+|+++|...+. -...+.+++|-|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678999999999999999999999999999999988765 89999999999988555 234677888887
Q ss_pred eechhhhhhcccCCC-------------------CCCC--CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCcee
Q 015040 78 KRALSREEQHNSRSG-------------------NFNS--GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVT 136 (414)
Q Consensus 78 ~~a~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~ 136 (414)
.++..++........ .... ...........-.+++|.++-+.|+-|-|..+|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 765544322111100 0000 0001111223456788999999999999999999999998
Q ss_pred eeEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHcC-Cc-cCC-eEEEEEecCC
Q 015040 137 DVVVMYDQNTQRPRGF-GFITFETEDAVDNVLQKVF-HE-LNG-KLVEVKRALP 186 (414)
Q Consensus 137 ~v~i~~d~~tg~~rG~-aFVeF~~~e~a~~Al~~~~-~~-i~g-r~i~V~~a~p 186 (414)
+|.-....+ +| |+|.|.+.+.|..|...|+ .. .++ +.|+|++++-
T Consensus 179 KIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 179 KIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 877654332 23 8999999999999999998 43 333 6888877653
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.8e-13 Score=124.10 Aligned_cols=78 Identities=27% Similarity=0.586 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.-+||||.-|+.+++|.+|++.|++||+|+.|.|++++.|+++||||||+|+++.+...|.+ +...|+++.|.|....
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999998 6679999999887543
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.9e-13 Score=115.83 Aligned_cols=76 Identities=25% Similarity=0.526 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
-.++|||+||+.++++.||+.+|..||+|..|+|.+.+ .|||||||+++.+|+.|+. +..+|++..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999998854 5899999999999999999 7889999999999877
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
-..
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 544
No 74
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.9e-13 Score=128.73 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=91.3
Q ss_pred eCCHHHHHHHHHcCCCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccC
Q 015040 54 FSDPSVLDQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYG 133 (414)
Q Consensus 54 F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G 133 (414)
..+.++|.++|.+ -.+..|+|+..+.+..-+... .........+.|||+.||.++.|+||..+|++.|
T Consensus 41 ~~~~eaal~al~E---~tgy~l~ve~gqrk~ggPpP~---------weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG 108 (506)
T KOG0117|consen 41 VQSEEAALKALLE---RTGYTLVVENGQRKYGGPPPG---------WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIG 108 (506)
T ss_pred cccHHHHHHHHHH---hcCceEEEeccccccCCCCCc---------ccCCCCCCCceEEecCCCccccchhhHHHHHhcc
Confidence 3445666666652 334556666555443322211 1111124678999999999999999999999999
Q ss_pred ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc-CCeEEEEEecC
Q 015040 134 HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL-NGKLVEVKRAL 185 (414)
Q Consensus 134 ~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i-~gr~i~V~~a~ 185 (414)
+|-+++||.|+.++.+||||||.|.+.++|++||+.|| ++| .++.|.|+.+.
T Consensus 109 ~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 109 KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 99999999999999999999999999999999999999 566 57888887653
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=123.76 Aligned_cols=79 Identities=34% Similarity=0.749 Sum_probs=76.0
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
..+|||+|||.++|+++|+++|.+|+.|..|.|+.|+.++++++||||+|.++++|+.|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999 799999999999653
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.40 E-value=1.1e-11 Score=118.60 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=132.8
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
+.+.++|-+|... ++.+.|..+|..||.|+.|++|+.+. +.|+||+.|+.++++|++ +...+.+.+|+|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4678999999765 88999999999999999999999864 789999999999999999 667788999998776
Q ss_pred hhhhhhccc-----------------CCCCCCC-CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCc-eeeeEEe
Q 015040 81 LSREEQHNS-----------------RSGNFNS-GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGH-VTDVVVM 141 (414)
Q Consensus 81 ~~~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~ 141 (414)
+........ +...+.+ ..........++++|+..|.|..+|||.|.++|..... .++|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 543221110 0000100 01112234467899999999999999999999975442 4566766
Q ss_pred ecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCC------eEEEEEecCCCC
Q 015040 142 YDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNG------KLVEVKRALPKD 188 (414)
Q Consensus 142 ~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~g------r~i~V~~a~p~~ 188 (414)
.-+.. ..-.+.+||++.++|..||.+++| .|++ ..|++.++.++.
T Consensus 441 p~kse--rSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 441 PLKSE--RSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred ccccc--ccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 55432 233689999999999999999995 6655 477777777654
No 77
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6.6e-13 Score=134.27 Aligned_cols=181 Identities=23% Similarity=0.398 Sum_probs=144.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc-----------C-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF-----------G-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHT 69 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~-----------G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~ 69 (414)
...+.++|.+||+.++|+.+..+|..- | .|+.|.|-..+ .||||+|.+.++|..++. +...
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccchh
Confidence 456889999999999999999999764 2 36666665554 499999999999999998 6677
Q ss_pred CCCceeeeeechhhhhhcccCCCCC----CCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCC
Q 015040 70 IDGRPVEAKRALSREEQHNSRSGNF----NSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQN 145 (414)
Q Consensus 70 i~gr~l~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 145 (414)
+.+.++++.........+....... ...............+|||.+||..+++++++|+.+.|++++...++.|..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 8888888866554333222211110 111222233445678999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 146 TQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 146 tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
++-+++|||.||.+......|+..++ ..+.+++|.|..|.+...
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 99999999999999999999999999 689999999998876543
No 78
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-13 Score=121.15 Aligned_cols=84 Identities=29% Similarity=0.597 Sum_probs=80.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||++|..+|+|.-|...|-+||.|++|.|+.|.++++.|+|+||+|+..|+|.+||..|+ .+|.+|+|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
|....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97644
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.2e-12 Score=128.89 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=71.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH--HHHHHHHHHcC-CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE--DAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~--e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
...+|||+||+++++++||+++|..||.|++|.|+ ++|+ ||||||+|.++ +++++||+.|+ .++.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 46899999999999999999999999999999999 5566 99999999876 78999999999 699999999999
Q ss_pred cCCC
Q 015040 184 ALPK 187 (414)
Q Consensus 184 a~p~ 187 (414)
|+|.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9874
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=3.8e-12 Score=95.16 Aligned_cols=71 Identities=30% Similarity=0.734 Sum_probs=66.0
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
+|+|.+||..+++++|+++|++||+|+.+.++.++ +.++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999999999 78999999874
No 81
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.2e-12 Score=111.58 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=69.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||+|||.++.|.||+++|-+|+.|.+|.+... ..+..||||+|+++.+|+.||...+ ..+++..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4688999999999999999999999999999988533 3456799999999999999999998 69999999999975
Q ss_pred C
Q 015040 186 P 186 (414)
Q Consensus 186 p 186 (414)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4.3e-12 Score=94.87 Aligned_cols=70 Identities=31% Similarity=0.716 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
+|||.+||+++++++|+++|++||+|.++.++.++ +.++++|||+|.++++|++|++ +.+.+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999999876 6788999999999999999998 4567888888763
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.4e-12 Score=94.44 Aligned_cols=70 Identities=36% Similarity=0.796 Sum_probs=65.7
Q ss_pred ecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 113 VGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 113 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
|.+||..+++++|+++|++||.|+.+.|..++.+.+++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999998888999999999999999999999999 68999999874
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=4.6e-12 Score=116.59 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=69.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
...+|||.||++.+||+||++||+.||+|++|+|++|.+ .++||||+|+++++++.||.+....|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 357899999999999999999999999999999999854 4679999999999999999777789999999998754
No 85
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=1.1e-12 Score=132.03 Aligned_cols=80 Identities=28% Similarity=0.623 Sum_probs=75.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
++|||+|||++++||+|.++|+..+.|.+++++.|+.|+++|||+|++|.++++|++|++ +..++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 667999999999997765
Q ss_pred hh
Q 015040 84 EE 85 (414)
Q Consensus 84 ~~ 85 (414)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=7.5e-12 Score=93.17 Aligned_cols=69 Identities=38% Similarity=0.782 Sum_probs=62.8
Q ss_pred EcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 10 IGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 10 VgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
|.+||+++++++|+++|++||+|++|.|..++.+.+++++|||+|.++++|++|++ +.+.+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988888999999999999999999998 4467788888763
No 87
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=120.07 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|+|.|||+...|-||+..|++||+|++|.|+.+ ..-+|||+||+|+++++|++|-+ +...|.+|+|+|+.+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3588999999999999999999999999999999986 34689999999999999999998 4568999999999998
Q ss_pred hhhhhc
Q 015040 82 SREEQH 87 (414)
Q Consensus 82 ~~~~~~ 87 (414)
.+...+
T Consensus 173 arV~n~ 178 (376)
T KOG0125|consen 173 ARVHNK 178 (376)
T ss_pred hhhccC
Confidence 774433
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=1.2e-11 Score=121.90 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHH--cCCCCCCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDP--SVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~--e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
...+|||+||++++++++|+.+|..||.|.+|.|++ .|+ |+||||+|.+. +++++||. +..++.++.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 356899999999999999999999999999999994 566 89999999987 67999999 78899999999999
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8764
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=1.9e-11 Score=119.04 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=72.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..+.+||.|||+++.|++||++|. +.|+|+.|.++.|.+ +++|+||.|||+++|.++||+++|+ +++++|+|+|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999996 789999999999965 9999999999999999999999999 6999999999986
Q ss_pred CC
Q 015040 185 LP 186 (414)
Q Consensus 185 ~p 186 (414)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 54
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=2.9e-12 Score=113.74 Aligned_cols=79 Identities=32% Similarity=0.535 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
...+|-|-||..-|+.++|+.+|++||.|.+|.|.+|+.|..++|||||.|.+..+|++||+ +..+|++++|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999 6789999999998776
Q ss_pred h
Q 015040 82 S 82 (414)
Q Consensus 82 ~ 82 (414)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 91
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=4.4e-12 Score=110.61 Aligned_cols=79 Identities=27% Similarity=0.500 Sum_probs=76.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
...+|||+||++.++++.|.++|-+.++|.+|+|++|+.+...+|||||||.++|+|+-|++.++ ..|-+++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 56899999999999999999999999999999999999999999999999999999999999999 59999999999987
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.1e-11 Score=91.62 Aligned_cols=73 Identities=36% Similarity=0.773 Sum_probs=67.4
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCCeEEEEEe
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKR 183 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~gr~i~V~~ 183 (414)
+|+|.+||..+++++|+++|+.|+.|..+.+..++.+ .++++|||+|.+.++|+.|++.++. .+++++|+|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 7789999999999999999999994 69999999864
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.29 E-value=4.6e-12 Score=121.91 Aligned_cols=179 Identities=18% Similarity=0.265 Sum_probs=143.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cC-CCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DK-HTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~-~~i~gr~l~v~~a~ 81 (414)
..+++||+++.+++.+.++..++...+.+..+.+.....+..+++++.|.|+..+.+..||+ .. +.+....+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888887777788899999999999999999999 33 46666666655544
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
.+....... .. ..........++|.+|++.+++++|+++|..++.|..|++..++.+..+++|++|+|.+..
T Consensus 167 ~~~~~~~n~----~~----~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPKNK----LS----RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccccch----hc----ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 443111100 00 0011112334449999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccCCeEEEEEecCCCCCC
Q 015040 162 AVDNVLQKVFHELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 162 ~a~~Al~~~~~~i~gr~i~V~~a~p~~~~ 190 (414)
....++......+.++++.|++..|+..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 239 SKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hHHHHhhcccCcccCcccccccCCCCccc
Confidence 99999988336899999999999887655
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.29 E-value=4.4e-11 Score=114.51 Aligned_cols=164 Identities=14% Similarity=0.186 Sum_probs=126.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH----cCCCCCCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ----DKHTIDGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~----~~~~i~gr~l~v~~ 79 (414)
.+-.|.|.+|-..++|.+|.|.++.||+|.-|.+|..+. .|.|+|+|.+.|+.++. +...+.++...+.+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 345799999999999999999999999999998887654 79999999999999987 44567777777766
Q ss_pred chhhhhhcccCCCCCCCCCCCCCCCccccceeE--ecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe
Q 015040 80 ALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIF--VGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF 157 (414)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF 157 (414)
+..+....... ....+.+.|. |-|--..+|.+-|..+...+|+|.+|.|++.. +. -|.|||
T Consensus 104 Stsq~i~R~g~------------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gV---QAmVEF 166 (494)
T KOG1456|consen 104 STSQCIERPGD------------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GV---QAMVEF 166 (494)
T ss_pred chhhhhccCCC------------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--ce---eeEEee
Confidence 65443322210 0011334443 44555678999999999999999999998662 22 599999
Q ss_pred CCHHHHHHHHHHcC-CccC--CeEEEEEecCCCCCC
Q 015040 158 ETEDAVDNVLQKVF-HELN--GKLVEVKRALPKDAS 190 (414)
Q Consensus 158 ~~~e~a~~Al~~~~-~~i~--gr~i~V~~a~p~~~~ 190 (414)
++.+.|++|.+.|+ .+|- -.+|+|++|+|.+.+
T Consensus 167 dsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 167 DSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred chhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 99999999999999 4443 489999999997643
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.1e-12 Score=115.47 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc--CCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD--KHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~--~~~i~gr~l~v~ 78 (414)
|....+||||++|..+++|..|...|-+||.|++|.|..|..+.++|+|+||+|...|+|..||++ ..+|.+|.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999994 469999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
.+++.+.
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9987654
No 96
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.27 E-value=4.3e-12 Score=122.57 Aligned_cols=118 Identities=42% Similarity=0.683 Sum_probs=94.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechhh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~~ 83 (414)
..+|||+.||.+++|++|+++|++|+.|.++.||.|+.+.++++|+||+|.+++++++++. .-|+|++++|+|++|.++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 5699999999999999999999999999999999999999999999999999999999999 669999999999999998
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCcee
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVT 136 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~ 136 (414)
+......... .......++....+--.|..+|+-|+++.
T Consensus 177 ~~~~~~~~~~--------------~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 177 EVMQSTKSSV--------------STRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred hhcccccccc--------------ccccccccccccccccccchhccccCccc
Confidence 8765432111 01111123444444555666777666553
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=6e-13 Score=115.85 Aligned_cols=79 Identities=27% Similarity=0.625 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.|+.-|||++||.++||.||...|++||+|++|.+++|+.|++++||||+.|++..+...|++ +...|.+|+|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 467789999999999999999999999999999999999999999999999999999999998 567899999999764
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=3.4e-11 Score=95.69 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=71.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
.++.|||.|||+.+|.|++.++|.+||+|..|+|-.+++| +|.|||.|++..+|++|++.|. ..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 5688999999999999999999999999999999887776 8999999999999999999999 69999999998766
Q ss_pred CC
Q 015040 186 PK 187 (414)
Q Consensus 186 p~ 187 (414)
|.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 53
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=3.6e-11 Score=90.30 Aligned_cols=71 Identities=39% Similarity=0.773 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
+|+|.+||+++++++|+++|+.+++|..+.++.++.+ .++++|||+|.++++|+.|++ +...+++++|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999998765 778999999999999999999 4456788888875
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.23 E-value=9.8e-11 Score=117.28 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=73.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~ 187 (414)
..+|||.|||.++++++|+++|..||+|+...|....-..+..+|+||+|++.++++.||++....|.+++|.|+..++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 35599999999999999999999999999999887653344449999999999999999999988999999999998775
Q ss_pred CCCC
Q 015040 188 DASG 191 (414)
Q Consensus 188 ~~~~ 191 (414)
....
T Consensus 368 ~~g~ 371 (419)
T KOG0116|consen 368 FRGN 371 (419)
T ss_pred cccc
Confidence 5443
No 101
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=4.3e-11 Score=95.11 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.++.|||.|||+++|.|++.++|-+||+|..|+|=..+ ..+|.|||+|++..+|++|++ ....++++.|.|...+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 46889999999999999999999999999999997655 458999999999999999999 5678999999999888
Q ss_pred hhhhhc
Q 015040 82 SREEQH 87 (414)
Q Consensus 82 ~~~~~~ 87 (414)
+.+...
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 766543
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.5e-12 Score=113.35 Aligned_cols=78 Identities=26% Similarity=0.565 Sum_probs=73.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
++.-|||++||+++||.||..+|++||+|++|.+++|+.|++++||||+.|++.-+..-|+..++ ..|.+|.|+|+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 56789999999999999999999999999999999999999999999999999999999999888 6999999999863
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.8e-11 Score=101.68 Aligned_cols=80 Identities=18% Similarity=0.407 Sum_probs=75.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
-.|||.+|.++++|++|.+.|..||+|++|++-.|+.|+-.||||+|+|++.++|++||+ |..+|.+..|+|.|+..+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 369999999999999999999999999999999999999999999999999999999999 667999999999998765
Q ss_pred hh
Q 015040 84 EE 85 (414)
Q Consensus 84 ~~ 85 (414)
..
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 54
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.20 E-value=3e-11 Score=121.60 Aligned_cols=81 Identities=28% Similarity=0.596 Sum_probs=77.5
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
..|||+|+|++++|++|.++|+..+.|.+++++.|++|+++|||+|++|.+++++++|++.|+ .++.+++|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999 7999999999998655
Q ss_pred CC
Q 015040 188 DA 189 (414)
Q Consensus 188 ~~ 189 (414)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.6e-11 Score=115.35 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=76.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~gr~i~V~~a 184 (414)
++...|||..|.+-+|++||.-+|+.||.|+.|.|++|..|+.+..||||||++++++++|.-+|++ .|++++|+|+++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4678999999999999999999999999999999999999999999999999999999999999985 899999999987
Q ss_pred CC
Q 015040 185 LP 186 (414)
Q Consensus 185 ~p 186 (414)
+.
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=5.3e-12 Score=112.98 Aligned_cols=138 Identities=20% Similarity=0.301 Sum_probs=110.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...+||||.||...++||.|.|+|-+-|+|..|.|..++. .+.| ||||+|+++.++.-|++ +...+.+++|+++..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3578999999999999999999999999999999988864 5667 99999999999999998 555666666655432
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
.-.. -..|...++++.+.+.|+.-++|..++|.++.+ ++.+-+.||++...
T Consensus 85 ~G~s----------------------------hapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 85 CGNS----------------------------HAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRL 135 (267)
T ss_pred cCCC----------------------------cchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhh
Confidence 1100 001556689999999999999999999998876 78888999999877
Q ss_pred HHHHHHHHHcC
Q 015040 161 DAVDNVLQKVF 171 (414)
Q Consensus 161 e~a~~Al~~~~ 171 (414)
.+.-.++....
T Consensus 136 ~~~P~~~~~y~ 146 (267)
T KOG4454|consen 136 CAVPFALDLYQ 146 (267)
T ss_pred hcCcHHhhhhc
Confidence 77766666554
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.3e-12 Score=136.31 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=128.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+..++||.||+..+.+++|.+.|..++.|+.+.|...+++++.||.|+|+|.+++++.+||. ....+.+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 45789999999999999999999999988888887667789999999999999999999997 2222221
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
...|||.++|+..|.++|+.++.+++.+++++++..+. ++++|.|||.|.++.+
T Consensus 736 -------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 -------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEAD 789 (881)
T ss_pred -------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcch
Confidence 25589999999999999999999999999999887765 8999999999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+.+++.+.+ ..++-+.++|....|..
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCCcc
Confidence 999999888 47777777777765533
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.6e-10 Score=87.82 Aligned_cols=61 Identities=21% Similarity=0.463 Sum_probs=54.9
Q ss_pred HHHHHHHhh----ccCceeeeE-EeecCCC--CCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 122 EDGFRQYFE----NYGHVTDVV-VMYDQNT--QRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 122 e~~L~~~F~----~~G~I~~v~-i~~d~~t--g~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
+++|+++|+ +||.|++|. |+.++++ ++++||+||+|+++++|++|++.|+ ..+.+++|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999996 7777777 8999999999999999999999999 69999999873
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=110.73 Aligned_cols=176 Identities=21% Similarity=0.284 Sum_probs=124.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
++..|....|||..++.+|..||+-.-.+.-...+.....++-.+++.|.|.|+|.-+.|++ .+|.+..+.|+|-++..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 45556778999999999999999865332222222211234556899999999999999999 78899999999988776
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCce----eeeEEeecCCCCCCceEEEEEeC
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHV----TDVVVMYDQNTQRPRGFGFITFE 158 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~tg~~rG~aFVeF~ 158 (414)
.+......-. .............-.|.+.+||+++++.|+.+||...-+| +.|-+++. .++++.|-|||.|.
T Consensus 139 e~f~~iagg~---s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 139 EEFLKIAGGT---SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFA 214 (508)
T ss_pred hhheEecCCc---cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEec
Confidence 5543322111 1111111111234567789999999999999999754333 34444444 35899999999999
Q ss_pred CHHHHHHHHHHcCCccCCeEEEEEe
Q 015040 159 TEDAVDNVLQKVFHELNGKLVEVKR 183 (414)
Q Consensus 159 ~~e~a~~Al~~~~~~i~gr~i~V~~ 183 (414)
.+++|+.||.++...|.-|-|+|-+
T Consensus 215 ~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988777777666544
No 110
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1e-10 Score=108.83 Aligned_cols=71 Identities=30% Similarity=0.633 Sum_probs=66.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCCeEEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~gr~i~V~~a~p~ 187 (414)
.+|||+|||..+++.+|+.+|++||+|.+|.|++. |+||..+++.+++.||..|++ +|++..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999954 999999999999999998885 999999999998877
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=3.7e-10 Score=81.83 Aligned_cols=55 Identities=22% Similarity=0.597 Sum_probs=49.5
Q ss_pred HHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 125 FRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 125 L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
|+++|++||+|++|.+..++ +++|||+|.+.++|++|++.++ ..|.+++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998664 5799999999999999999999 6999999999985
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.00 E-value=1.2e-09 Score=82.99 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=51.9
Q ss_pred cHHHHHHHhh----ccCCeeEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeee
Q 015040 18 TEGTLRDYFT----RFGDVSQVV-IMRDKTT--GRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEA 77 (414)
Q Consensus 18 tee~L~e~F~----~~G~V~~v~-i~~~~~t--g~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v 77 (414)
.+++|+++|+ +||+|.+|. |+.++.+ ++++||+||+|.++++|++|++ +.+.+.++.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3678888888 999999996 7776666 8899999999999999999999 667888888875
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=1.9e-09 Score=111.91 Aligned_cols=77 Identities=25% Similarity=0.559 Sum_probs=70.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+-++||||+.|+..++|+||+.+|+.||+|.+|.++.. ++||||.+.+..+|++||++|. ..+..++|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999999999999744 7899999999999999999999 6999999999998
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
..+-
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 7543
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=9.6e-10 Score=113.99 Aligned_cols=76 Identities=20% Similarity=0.471 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
-++||||+.|+..++|+||.++|+.||+|++|+++..+ +||||++...++|++||+ +.+.+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 47999999999999999999999999999999998764 699999999999999999 6678999999999998
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
-+-.
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6543
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.93 E-value=5.2e-10 Score=102.45 Aligned_cols=165 Identities=17% Similarity=0.287 Sum_probs=117.1
Q ss_pred EEEcCCCCCCcHHH-H--HHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 8 LFIGGIAWDTTEGT-L--RDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 8 LfVgnLp~~~tee~-L--~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
+|+.++-.++..+- | ...|+.+-.....+++++. -+..+.++|+.|+..+.-.++-. +++.+.-.+|++-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 45555544444433 2 4556666555666666654 35567799999887766555544 33344444444433332
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
.++... ........+||.+.|..+++++.|.+.|.+|-.....++++|+.|++++||.||.|.+.++
T Consensus 178 wedPsl-------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 178 WEDPSL-------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred cCCccc-------------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 222111 1112356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEecCC
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
+..|+.+|+ +.++.++|++....-
T Consensus 245 ~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred HHHHHHhhcccccccchhHhhhhhH
Confidence 999999999 788999998876543
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.1e-09 Score=100.77 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.|-|.|||=.||.+..+.||.+.|-.||.|++.+|..|+.|..+|+|+||.|+++.+|+.||+ |...|.-|+|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 467999999999999999999999999999999999999999999999999999999999999 666788888888765
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+++
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 5544
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=3.4e-09 Score=76.68 Aligned_cols=54 Identities=31% Similarity=0.700 Sum_probs=48.0
Q ss_pred HHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 22 LRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 22 L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
|+++|++||+|++|++.+++ +++|||+|.++++|++|++ +...+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998765 4699999999999999998 778999999999875
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-09 Score=102.93 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
....+.|||..|.+-+++|+|+-+|+.||+|.+|.|++++.|+.+..||||+|++.+++++|.- +...|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3567899999999999999999999999999999999999999999999999999999999987 55688999999988
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
++.-..
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 765443
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=8.1e-10 Score=116.24 Aligned_cols=158 Identities=19% Similarity=0.288 Sum_probs=120.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc--CCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD--KHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~--~~~i~gr~l~v~~a 80 (414)
..++|||++||+.++++.+|+..|..+|.|++|.|.+.+....+ -|+||.|.+.+.+-+|+.. ...|..-.+++...
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-chhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45799999999999999999999999999999998776432233 4899999998887777652 22222222222222
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
.. ....++.|+|+.|..++....|..+|..||.|..|.+-..+ -||+|.+++.
T Consensus 449 ~~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~ 501 (975)
T KOG0112|consen 449 QP---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESP 501 (975)
T ss_pred cc---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccC
Confidence 11 11257889999999999999999999999999998875432 3999999999
Q ss_pred HHHHHHHHHcC-CccCC--eEEEEEecCCCC
Q 015040 161 DAVDNVLQKVF-HELNG--KLVEVKRALPKD 188 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~g--r~i~V~~a~p~~ 188 (414)
.++++|++.+. ..|.+ ++|.|.++.+..
T Consensus 502 ~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 502 PAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred ccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 99999998887 45543 779999887654
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=4.3e-09 Score=100.44 Aligned_cols=79 Identities=28% Similarity=0.555 Sum_probs=70.5
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC--CccCCeEEEE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF--HELNGKLVEV 181 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~--~~i~gr~i~V 181 (414)
.+..-++|||++|-..++|.||+++|.+||+|+.|+|+.. +++|||+|.+.++|+.|.++.. ..|++++|+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445689999999989999999999999999999999876 3499999999999999998887 3899999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
.|..|+.
T Consensus 298 ~Wg~~~~ 304 (377)
T KOG0153|consen 298 KWGRPKQ 304 (377)
T ss_pred EeCCCcc
Confidence 9998843
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.87 E-value=4.4e-09 Score=107.79 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=125.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.|.+.|-+..+++++++.|+++||.-. .|..+.|..++....-.|-++|+|....++++|++ +...+-.|.|++..+-
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 567888889999999999999998754 34555555554444447899999999999999999 5566677888775544
Q ss_pred hhhhhcccCCCC------------------CCCCCCC--CCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEe
Q 015040 82 SREEQHNSRSGN------------------FNSGRGS--EGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVM 141 (414)
Q Consensus 82 ~~~~~~~~~~~~------------------~~~~~~~--~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 141 (414)
.....-...... ....... .........+|||..||..+++.++.++|...-.|++...+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 332211100000 0000000 00112345789999999999999999999988888885444
Q ss_pred ecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 142 YDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 142 ~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..-.+.+.+..|||+|..++++.+|+...+ +.+..+.|+|+-
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 444567788999999999777777766555 677788888864
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=9.4e-09 Score=98.12 Aligned_cols=74 Identities=26% Similarity=0.509 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v~~ 79 (414)
....||||++|-..++|.+|+++|.+||+|+.|.|+..+ ++|||+|.+.++|++|.+ +...|+++.|+|+|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999998899999999999999999999999865 499999999999999998 66688999999999
Q ss_pred chh
Q 015040 80 ALS 82 (414)
Q Consensus 80 a~~ 82 (414)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 887
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=2.7e-08 Score=100.00 Aligned_cols=80 Identities=24% Similarity=0.537 Sum_probs=74.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..+.|||.+|+..+...||+.||++||.|+-.+|++...+.-.++|+||++.+.++|.+||+.|+ ++|.+++|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999998888889999999999999999999999 69999999999987
Q ss_pred C
Q 015040 186 P 186 (414)
Q Consensus 186 p 186 (414)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=1.9e-08 Score=101.08 Aligned_cols=79 Identities=19% Similarity=0.456 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcC--CCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK--HTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~--~~i~gr~l~v~~a~~ 82 (414)
.+.|||.+|+..+...+|+.||.+||.|+-++|+.+..+.-.++|+||++.+.++|.+||++. ++|++++|.|++++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999999999888889999999999999999999954 599999999998764
Q ss_pred h
Q 015040 83 R 83 (414)
Q Consensus 83 ~ 83 (414)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=88.68 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=72.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhcc-CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-ccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENY-GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-ELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-~i~gr~i~V~~a 184 (414)
....++|..+|.-+.+.+|..+|.+| |.|+++++.+.+.|+.+|+||||||++++.|+-|.+.||. .|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 7888999999999999999999999999999999999995 788899998885
Q ss_pred CCC
Q 015040 185 LPK 187 (414)
Q Consensus 185 ~p~ 187 (414)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.74 E-value=4e-08 Score=87.84 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF-GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~-G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
....++|..||.-+.|.+|..+|.+| |.|..+++.+++.|+.+|+||||+|++++.|+-|-+ |.-.|.++.|+++..
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 678888888999999999999999999999999998 445788899998877
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 665
No 127
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.69 E-value=4.8e-08 Score=88.66 Aligned_cols=79 Identities=19% Similarity=0.464 Sum_probs=71.2
Q ss_pred ccceeEecCCCCCCCHHHHHH----HhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQ----YFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
+..||||.||++.+..++|++ +|++||.|.+|...+ |.+.||-|||.|++.++|..|+..|+ ..|-+++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999988 999999999999884 46679999999999999999999999 5999999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
.+|+.+.
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998655
No 128
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.69 E-value=4.9e-08 Score=93.23 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=72.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceee--------eEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD--------VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
...+.|||.+||.++|.+++.++|.+||.|.+ |+|.++.+ +..||=|+|.|-.+++++-||+.|+ ..|.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45677999999999999999999999998863 77888766 9999999999999999999999999 69999
Q ss_pred eEEEEEecCC
Q 015040 177 KLVEVKRALP 186 (414)
Q Consensus 177 r~i~V~~a~p 186 (414)
+.|+|+.|+=
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999999863
No 129
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=3.3e-08 Score=99.25 Aligned_cols=78 Identities=23% Similarity=0.441 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
+-.+|||.|||.++++++|+++|++||+|++..|.......+..+|+||+|.+.++++.||+ +...|.+++|.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34569999999999999999999999999998887754233444899999999999999999 7678889998886443
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=6.2e-08 Score=90.44 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=74.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
...+|.|.|||..|+++||+++|+.|++++.+.|..++. +++.|+|-|.|+..++|++|+++++ ..++++.|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 457899999999999999999999999999999998865 8899999999999999999999999 69999999998876
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
+...
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5443
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.67 E-value=2.4e-08 Score=93.23 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.+.+||+|+.+.+|.++|+.+|+.|+.|..|.|++|+.++.+|+|+||+|++.+.++++|+ ++ .+|.++.|+|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 467889999999999999999999999999999999999999999999999999999999999 55 7999999999987
Q ss_pred CCC
Q 015040 185 LPK 187 (414)
Q Consensus 185 ~p~ 187 (414)
+-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.64 E-value=1.5e-07 Score=96.77 Aligned_cols=75 Identities=12% Similarity=0.332 Sum_probs=67.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
+.|.+.|+|++++.+||.+||..|-.+-.-.+++..+.+++.|.|.|.|++.++|.+|.+.++ +.|..++|.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478999999999999999999999888766666777789999999999999999999999998 699999999874
No 133
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=91.25 Aligned_cols=84 Identities=20% Similarity=0.391 Sum_probs=77.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCcee--------eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVT--------DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
....+|||-.||..+++++|.++|.+++.|+ .|.|.+|++|.++|+-|.|.|++..+|++||+.++ +.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4567899999999999999999999999987 37888999999999999999999999999999999 79999
Q ss_pred eEEEEEecCCCCC
Q 015040 177 KLVEVKRALPKDA 189 (414)
Q Consensus 177 r~i~V~~a~p~~~ 189 (414)
.+|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999877664
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=1.6e-08 Score=97.81 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=114.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTT---GRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~t---g~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
....|-|.||.+.++.+++..+|..+|+|.++.|+.+..+ ....-.|||.|.|...+..|.. ..+.|-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 4568999999999999999999999999999999885432 2344589999999999888877 44555566665544
Q ss_pred chhhhhhcc-------cC-----CCCC---------C------C---CCCCCCCC-------ccccceeEecCCCCCCCH
Q 015040 80 ALSREEQHN-------SR-----SGNF---------N------S---GRGSEGGG-------YFKTKKIFVGGLPPTLTE 122 (414)
Q Consensus 80 a~~~~~~~~-------~~-----~~~~---------~------~---~~~~~~~~-------~~~~~~lfV~nLp~~~te 122 (414)
+........ .. .... . . ...+..+. ..-..+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 322111000 00 0000 0 0 00000000 011267999999999999
Q ss_pred HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccC
Q 015040 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELN 175 (414)
Q Consensus 123 ~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~ 175 (414)
.+|.+.|+.+|+|...++..... .-+|.|+|........||..+..++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999998777653322 34788999998899999988875444
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=1.4e-07 Score=88.06 Aligned_cols=83 Identities=22% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
|....+|+|.|||..|+++||+|+|++|++++.+.|-.++ ++++.|.|-|.|...++|++|++ +...++++.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999998888888875 69999999999999999999999 66899999998877
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 665443
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=3.1e-08 Score=89.05 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=68.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++|||.||...|+|+.|.|+|-+-|+|.+|.|..+++ ++.| ||||+|++|..+.-|+++++ ..+.++.|.|++-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 468999999999999999999999999999999998876 5566 99999999999999999999 6888888888763
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=1.3e-07 Score=88.41 Aligned_cols=82 Identities=24% Similarity=0.492 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.+.|||+|+...+|.++|+..|+.|+.|..|.|..++.++.+|+|+||+|.+.+.++++|+ +...|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4678999999999999999999999999999999999999998999999999999999999999 888999999998766
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 544
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=8.9e-08 Score=96.73 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=104.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..+++|+|-|||.+|++++|+++|+.||+|.+|+..+. .++.+||+|-|..+|++||+ +..+|.++.|+....
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 46899999999999999999999999999999765544 35899999999999999999 566888888873222
Q ss_pred hhhhhhcccCC---CCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe
Q 015040 81 LSREEQHNSRS---GNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF 157 (414)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF 157 (414)
..+........ ...........+..-....+|+- |++.++...++.+|..++.++. +.. ..-+-.-|++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~-----~~~~hq~~~~~ 220 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RET-----PLLNHQRFVEF 220 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccc-----cchhhhhhhhh
Confidence 21111111000 00000000001111113344443 8888888777777777777665 221 11111357777
Q ss_pred CCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 158 ETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 158 ~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
.+..++..++......+.+....+.++.+
T Consensus 221 ~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCCceecCCCCceEEecCC
Confidence 77666644433222345555555555433
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=2.3e-07 Score=84.93 Aligned_cols=72 Identities=29% Similarity=0.611 Sum_probs=65.3
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
..|||++||+.+.+.+|++||..|+.|.+|.+. .+|+||+|+++.+|+.|+..++ .+|.+.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999999886 5699999999999999999999 6888888999998765
Q ss_pred C
Q 015040 188 D 188 (414)
Q Consensus 188 ~ 188 (414)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=2.8e-08 Score=104.54 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=124.2
Q ss_pred CCEEEEcCCCCCCcHH-HHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEG-TLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee-~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
.+++.+.++.+...+. .++..|+.++.|+.|++......-..--+.++++..+.+++.++. ....+..+.+.|-.+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3566778887665544 778899999999999987632221112288999999999999998 66677888877776666
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
++........ ........++||.||+..+.++||.+.|..++.|+.|.|....++++.||.|+|+|..+++
T Consensus 651 ~~~~~~~kvs---------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 651 EEKEENFKVS---------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred hhhhhccCcC---------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 5532221111 1111245789999999999999999999999999998888777889999999999999999
Q ss_pred HHHHHHHcCCccCC
Q 015040 163 VDNVLQKVFHELNG 176 (414)
Q Consensus 163 a~~Al~~~~~~i~g 176 (414)
+.+||...+..+.+
T Consensus 722 ~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999888754444
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.38 E-value=2.4e-06 Score=68.76 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=67.3
Q ss_pred ceeEecCCCCCCCHHHHHHHhhc--cCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC----CeEEEE
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFEN--YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN----GKLVEV 181 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~----gr~i~V 181 (414)
+||.|+|||...|.++|.+++.. .+....+-++.|..+....|||||.|.++++|.+..+.++ ..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999975 3567778888999999999999999999999999999888 3433 578888
Q ss_pred EecCCC
Q 015040 182 KRALPK 187 (414)
Q Consensus 182 ~~a~p~ 187 (414)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=7.1e-08 Score=94.10 Aligned_cols=147 Identities=20% Similarity=0.384 Sum_probs=118.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeeeeech
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v~~a~ 81 (414)
.+|||+||.+.++..+|+.+|...- .+..-.++.. +|+||.+.+...|.+|++ .+.++.++.+++....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5799999999999999999998652 2222233332 699999999999999999 3468999999999888
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEe-ecCCCCCCceEEEEEeCCH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVM-YDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~tg~~rG~aFVeF~~~ 160 (414)
+++.+ +++|-|.|+|..+.|+.|..++..|+.|+.|..+ .|.+|- ..-|+|.+.
T Consensus 75 ~kkqr---------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~ 129 (584)
T KOG2193|consen 75 PKKQR---------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQ 129 (584)
T ss_pred hHHHH---------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHH
Confidence 77654 3458899999999999999999999999988653 444431 234678889
Q ss_pred HHHHHHHHHcC-CccCCeEEEEEec
Q 015040 161 DAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+.++.||++++ +.|....++|.+-
T Consensus 130 ~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 130 QQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHHhhcchHhhhhhhhcccC
Confidence 99999999999 5899999999884
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.4e-06 Score=67.85 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=53.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRF--GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~--G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+||+|.|||...|.++|.+++... +...-+-+..|..+..+.|||||.|.++++|.+..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~ 63 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYK 63 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHH
Confidence 699999999999999999999764 456667777788888999999999999999999887
No 144
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.31 E-value=5.9e-06 Score=74.82 Aligned_cols=86 Identities=14% Similarity=0.271 Sum_probs=68.6
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEE-eecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC---CeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVV-MYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN---GKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~---gr~i~V 181 (414)
..++|||.+||.++..-||..+|..|--.+...| +.++..+..+=++||+|.+..+|.+|+++++ ..|+ ...|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999876665444 3455545566799999999999999999999 3443 588899
Q ss_pred EecCCCCCCCC
Q 015040 182 KRALPKDASGG 192 (414)
Q Consensus 182 ~~a~p~~~~~~ 192 (414)
++|+...++..
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 98877665543
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=2.5e-06 Score=88.25 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=73.4
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQ---NTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
...++.|||.||++.++|+.|...|..||+|..|+|+..+ +..+.+-|+||.|.+..++++|++.|+ ..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998754 455677899999999999999999999 688999999
Q ss_pred EEecCC
Q 015040 181 VKRALP 186 (414)
Q Consensus 181 V~~a~p 186 (414)
+-|.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=9.5e-07 Score=81.34 Aligned_cols=82 Identities=26% Similarity=0.608 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.-+||.+.|..+++++.|...|++|-.-...++++++.|+++|+|.||.|.+++++.+|+. +.+-+..+.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456789999999999999999999999988899999999999999999999999999999998 556778888877655
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
..++
T Consensus 268 ~wke 271 (290)
T KOG0226|consen 268 EWKE 271 (290)
T ss_pred hHHh
Confidence 4443
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.24 E-value=1.1e-06 Score=84.80 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVS--------QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG 72 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~--------~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g 72 (414)
+..-+|||-.||..+++++|.++|.+++.|. .|+|-+++.|.++|+-|.|+|.++..|+.||. +...+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4567999999999999999999999999875 58888999999999999999999999999999 6788899
Q ss_pred ceeeeeechhhhh
Q 015040 73 RPVEAKRALSREE 85 (414)
Q Consensus 73 r~l~v~~a~~~~~ 85 (414)
.+|+|.++..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 8888887776553
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=8.9e-07 Score=89.63 Aligned_cols=70 Identities=21% Similarity=0.445 Sum_probs=62.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
.+..+|+|-|||.+|++++|+++|+.||+|+.|+.... .++.+||+|-|.-+|++|+++++ .+|.++.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 46789999999999999999999999999999765433 46899999999999999999999 689998888
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=6.9e-06 Score=67.44 Aligned_cols=69 Identities=22% Similarity=0.398 Sum_probs=44.4
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC------ccCCeEEEEE
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH------ELNGKLVEVK 182 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~------~i~gr~i~V~ 182 (414)
..|+|.+++..++.++|+++|++|+.|..|.+..... .|+|.|.++++|++|++++.. .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999987544 699999999999999987752 4666666655
Q ss_pred e
Q 015040 183 R 183 (414)
Q Consensus 183 ~ 183 (414)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.00 E-value=1.2e-06 Score=86.10 Aligned_cols=66 Identities=12% Similarity=0.288 Sum_probs=57.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeec---CCCCC----------CceEEEEEeCCHHHHHHHHHHcC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYD---QNTQR----------PRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~----------~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.+.++|.+.|||.+-.-+.|.++|..+|.|+.|+|++. +++.+ .+=+|||||+..++|.+|.++++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 47899999999999999999999999999999999876 33221 14589999999999999999997
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.96 E-value=2.2e-05 Score=75.33 Aligned_cols=75 Identities=15% Similarity=0.340 Sum_probs=65.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccC--ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYG--HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
...++||+||-|.+|++||.+.+...| .|.+++++..+..+++||||+|...++.++++.++.|. ++|.+..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 457899999999999999999987765 57788888888999999999999999999999999998 5888864444
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.96 E-value=7e-06 Score=78.63 Aligned_cols=77 Identities=18% Similarity=0.432 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFG--DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G--~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.-.+||+||-|.+|++||.+.+...| .+.++++..++.++.+||||+|...+.+++++.|+ -+++|++..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34689999999999999999998877 68899999999999999999999999999999998 567888887666544
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.89 E-value=2.6e-05 Score=81.04 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKT---TGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~---tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
..+.|||+||++.++|+.|...|-.||+|..|+||..+. ..+.+-|+||.|.+..+|++||+ +...+...++++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 357799999999999999999999999999999998654 24567899999999999999999 4557777777777
Q ss_pred ech
Q 015040 79 RAL 81 (414)
Q Consensus 79 ~a~ 81 (414)
|.+
T Consensus 253 Wgk 255 (877)
T KOG0151|consen 253 WGK 255 (877)
T ss_pred ccc
Confidence 764
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=4.3e-05 Score=62.73 Aligned_cols=54 Identities=28% Similarity=0.499 Sum_probs=37.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+.|+|.+++..++-++|+++|++|++|..|.+.+... .|+|.|.++++|++|++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHH
Confidence 5789999999999999999999999999999887643 79999999999999998
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.78 E-value=8e-05 Score=57.57 Aligned_cols=68 Identities=12% Similarity=0.269 Sum_probs=44.7
Q ss_pred CEEEEcCCCCCCcHHHH----HHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 6 GKLFIGGIAWDTTEGTL----RDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L----~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
..|+|.|||.+.+...| +.+++.+| .|.+|. . +.|+|.|.+++.|++|++ +...+.+.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--G--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--C--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999887654 55666776 677762 1 379999999999999999 7789999999998
Q ss_pred echhh
Q 015040 79 RALSR 83 (414)
Q Consensus 79 ~a~~~ 83 (414)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.72 E-value=0.00013 Score=56.49 Aligned_cols=67 Identities=19% Similarity=0.372 Sum_probs=46.0
Q ss_pred ceeEecCCCCCCCHHH----HHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 109 KKIFVGGLPPTLTEDG----FRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~----L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
..|+|.|||.+.+... |+++++.|| .|..| . .+.|+|.|.+++.|++|++.|+ ..+.+++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 567777776 45444 1 2479999999999999999999 68999999999
Q ss_pred ecC
Q 015040 183 RAL 185 (414)
Q Consensus 183 ~a~ 185 (414)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 863
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=7.9e-05 Score=53.24 Aligned_cols=53 Identities=13% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
++.|-|.+.+++..++ |.++|.+||+|+++.+....+ +.+|+|+++.+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 3678899999776654 555889999999988874333 8999999999999986
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.56 E-value=4.2e-05 Score=73.92 Aligned_cols=82 Identities=24% Similarity=0.534 Sum_probs=72.9
Q ss_pred CCEEE-EcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 5 EGKLF-IGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLf-VgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
..++| |.+|+.++++++|+++|..++.|..+++..++.+..+++|++|+|.+.+.+.+++. ..+.+.++++.+....+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34555 99999999999999999999999999999999999999999999999999999998 66788999998887776
Q ss_pred hhhh
Q 015040 83 REEQ 86 (414)
Q Consensus 83 ~~~~ 86 (414)
+...
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 5443
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.50 E-value=0.00019 Score=51.25 Aligned_cols=52 Identities=21% Similarity=0.530 Sum_probs=41.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHH
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVL 167 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al 167 (414)
+.|-|.+.+.+.. ++|.++|..||+|+++.+.... -+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 4678889988755 4455588899999999887333 38999999999999986
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.40 E-value=0.00018 Score=70.96 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=55.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEec---CCCCC----------cceEEEEEeCCHHHHHHHHH
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRD---KTTGR----------PRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~---~~tg~----------~kG~aFV~F~~~e~A~~Al~ 65 (414)
..++||.+-|||.+-.-|.|.++|..+|.|+.|+|+.. +.+.+ .+-+|||||...+.|++|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 46899999999999888999999999999999999886 33221 36789999999999999998
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.00037 Score=70.86 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=58.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhh--ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFE--NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~--~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V 181 (414)
+.+.|.|..||+++-+|++|.||+ .|-.+++|.+..... -||+|++++||++|.+.|. ++|.+++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 568888999999999999999996 477788888765543 7999999999999998886 5888888875
Q ss_pred Ee
Q 015040 182 KR 183 (414)
Q Consensus 182 ~~ 183 (414)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 54
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00051 Score=69.51 Aligned_cols=78 Identities=28% Similarity=0.356 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc-----CCCCCCceeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFT-RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD-----KHTIDGRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~-~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~-----~~~i~gr~l~v 77 (414)
..+||||+.||--++.++|..+|+ -||.|.-|-|=.|++-+-+||.+=|+|.+..+-.+||+. .|.-..|+|+|
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEI 448 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEI 448 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeee
Confidence 368999999999999999999999 799999999999987888999999999999999999982 23334557777
Q ss_pred eech
Q 015040 78 KRAL 81 (414)
Q Consensus 78 ~~a~ 81 (414)
+.-.
T Consensus 449 kPYv 452 (520)
T KOG0129|consen 449 KPYV 452 (520)
T ss_pred ccee
Confidence 6555
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00065 Score=55.07 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEE-------------EEecCCCCCcceEEEEEeCCHHHHHHHHH-cCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVV-------------IMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKH 68 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~-------------i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~ 68 (414)
.+++-|.|=+.|+. ....|.++|++||+|++.. +... ..+..|+|+++.+|++||. +..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~------~NWi~I~Y~~~~~A~rAL~~NG~ 76 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG------GNWIHITYDNPLSAQRALQKNGT 76 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC------TTEEEEEESSHHHHHHHHTTTTE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC------CCEEEEECCCHHHHHHHHHhCCe
Confidence 45677888899988 5667778999999998875 2222 2389999999999999999 777
Q ss_pred CCCC-ceeeeeechhhh
Q 015040 69 TIDG-RPVEAKRALSRE 84 (414)
Q Consensus 69 ~i~g-r~l~v~~a~~~~ 84 (414)
.|.+ .+|-|++.++..
T Consensus 77 i~~g~~mvGV~~~~~~~ 93 (100)
T PF05172_consen 77 IFSGSLMVGVKPCDPAD 93 (100)
T ss_dssp EETTCEEEEEEE-HHHH
T ss_pred EEcCcEEEEEEEcHHhH
Confidence 7876 456677765443
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0016 Score=52.73 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=52.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeE-EeecC------CCCCCceEEEEEeCCHHHHHHHHHHcCCccCC-eE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVV-VMYDQ------NTQRPRGFGFITFETEDAVDNVLQKVFHELNG-KL 178 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~d~------~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~g-r~ 178 (414)
....|.|.+.|+. ....|.++|++||+|.+.. +.++. ..........|+|+++.+|++||.+....|.+ .+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4566889999997 6778889999999998775 11110 00112348899999999999999999988887 46
Q ss_pred EEEEecC
Q 015040 179 VEVKRAL 185 (414)
Q Consensus 179 i~V~~a~ 185 (414)
|-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 6677764
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.10 E-value=0.00078 Score=64.63 Aligned_cols=82 Identities=21% Similarity=0.509 Sum_probs=63.7
Q ss_pred cccceeEecCCCCCCCHHH----H--HHHhhccCceeeeEEeecCCCCCC-ceE--EEEEeCCHHHHHHHHHHcC-CccC
Q 015040 106 FKTKKIFVGGLPPTLTEDG----F--RQYFENYGHVTDVVVMYDQNTQRP-RGF--GFITFETEDAVDNVLQKVF-HELN 175 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~----L--~~~F~~~G~I~~v~i~~d~~tg~~-rG~--aFVeF~~~e~a~~Al~~~~-~~i~ 175 (414)
.+..-+||-.||..+..|+ | .++|.+||.|++|.|-+....-.+ .+. .+|+|.+.|+|.+||.+.+ ..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 4566789999998887776 2 478999999999998765422211 122 3999999999999999999 6899
Q ss_pred CeEEEEEecCCC
Q 015040 176 GKLVEVKRALPK 187 (414)
Q Consensus 176 gr~i~V~~a~p~ 187 (414)
||.|+..+-..|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999876543
No 166
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0032 Score=46.24 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=46.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhcc---CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENY---GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
...+|+|.++.. ++.+||+.+|..| ....+|..+.|. .|-|.|.+++.|.+||.+|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 456799999976 8999999999988 235577777665 4999999999999999865
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.0025 Score=59.25 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCcee
Q 015040 57 PSVLDQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVT 136 (414)
Q Consensus 57 ~e~A~~Al~~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~ 136 (414)
.+.|++.|. .....++.|+|.++.. ..|+|.||+.-++-+.|.+.|+.|++|.
T Consensus 7 ae~ak~eLd-~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 7 AEIAKRELD-GRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHhcC-CCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 445555554 4556777888877652 5699999999999999999999999999
Q ss_pred eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-----ccCCeEEEEEecC
Q 015040 137 DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-----ELNGKLVEVKRAL 185 (414)
Q Consensus 137 ~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-----~i~gr~i~V~~a~ 185 (414)
...++.|.. .++.+-.+|+|..+-.+.+|+..+.+ +...+++-|+...
T Consensus 60 ~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 60 RAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred hheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 888777743 77788999999999999999888852 4455666665543
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.76 E-value=0.014 Score=63.27 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=6.2
Q ss_pred CCcceEEEEEeCCH
Q 015040 44 GRPRGFGFVVFSDP 57 (414)
Q Consensus 44 g~~kG~aFV~F~~~ 57 (414)
++-++|+--.|+++
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 33444444444443
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.0041 Score=59.85 Aligned_cols=79 Identities=15% Similarity=0.432 Sum_probs=59.2
Q ss_pred CCEEEEcCCCCCCcHHH------HHHHhhccCCeeEEEEEecCCC-CCcceEE--EEEeCCHHHHHHHHH--cCCCCCCc
Q 015040 5 EGKLFIGGIAWDTTEGT------LRDYFTRFGDVSQVVIMRDKTT-GRPRGFG--FVVFSDPSVLDQVLQ--DKHTIDGR 73 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~------L~e~F~~~G~V~~v~i~~~~~t-g~~kG~a--FV~F~~~e~A~~Al~--~~~~i~gr 73 (414)
.+.|||-+||+.+..|+ -.++|-+||.|..|.|-+...+ ......+ ||+|.+.|+|.+||. +...+++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999998866555 3479999999998887653211 1122234 999999999999999 77899999
Q ss_pred eeeeeechhh
Q 015040 74 PVEAKRALSR 83 (414)
Q Consensus 74 ~l~v~~a~~~ 83 (414)
.|+..+-..+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9998765543
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.68 E-value=0.00049 Score=63.94 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=48.3
Q ss_pred HHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 20 GTLRDYFT-RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 20 e~L~e~F~-~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
|+|...|+ +|++|++++|..+. ....+|-++|.|..+|+|++|++ +...+.+++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 89999999887764 34568899999999999999999 6778899998776654
No 171
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.62 E-value=0.0023 Score=62.65 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=63.1
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQN---TQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
..|.|.||.+.+|.++|+.||.-.|.|.++.|+.... -....-.|||.|.|+..+..|..+.+..|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 4799999999999999999999999999999876321 122346899999999999999999998777777776553
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0031 Score=64.43 Aligned_cols=74 Identities=14% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCEEEEcCCCCC--Cc----HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC-Ccee
Q 015040 5 EGKLFIGGIAWD--TT----EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID-GRPV 75 (414)
Q Consensus 5 ~~tLfVgnLp~~--~t----ee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~-gr~l 75 (414)
...|+|-++|.- .. ...|..+|+++|+|+.+.+..+..++ .+||.|++|++..+|+.|++ +.+.|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 567899999853 22 23456688999999999988876544 99999999999999999998 444444 3444
Q ss_pred eeee
Q 015040 76 EAKR 79 (414)
Q Consensus 76 ~v~~ 79 (414)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 4443
No 173
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.58 E-value=0.04 Score=52.43 Aligned_cols=167 Identities=10% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCC-------CCCcceEEEEEeCCHHHHHHHH----H----cCC
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKT-------TGRPRGFGFVVFSDPSVLDQVL----Q----DKH 68 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~-------tg~~kG~aFV~F~~~e~A~~Al----~----~~~ 68 (414)
..|.|.+.||..+++-..+.+.|.+|++|+.|.++.+.. ..+....+.+.|-+.+.+-... + -+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999998761 2234458899999988776533 2 245
Q ss_pred CCCCceeeeeechhhhhhcccCC---CCCC---CCCC-CCCCCccccceeEecCCCCCCCHHH-HHHHh---hccC----
Q 015040 69 TIDGRPVEAKRALSREEQHNSRS---GNFN---SGRG-SEGGGYFKTKKIFVGGLPPTLTEDG-FRQYF---ENYG---- 133 (414)
Q Consensus 69 ~i~gr~l~v~~a~~~~~~~~~~~---~~~~---~~~~-~~~~~~~~~~~lfV~nLp~~~te~~-L~~~F---~~~G---- 133 (414)
.+.-..|.+....-+........ .+.+ .... ..-.....++.|.|. +...+.+++ |.+.+ ..-.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceE
Confidence 67777777766543222111100 0000 0000 011122346677775 334454444 33322 1111
Q ss_pred ceeeeEEeecC--CCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 134 HVTDVVVMYDQ--NTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 134 ~I~~v~i~~d~--~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.|+.|.|+... ...-++-||.++|-+..-|.++++.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 46677777543 334477899999999888888877765
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.50 E-value=0.017 Score=49.21 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=56.9
Q ss_pred cccceeEecCCCCCCC-HHHH---HHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEE
Q 015040 106 FKTKKIFVGGLPPTLT-EDGF---RQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~t-e~~L---~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V 181 (414)
.+..+|.|.=|..++. .+|| ...++.||+|+.|.+.-. -.|.|.|+|..+|-+|+.++.....+..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 4567888876665543 3444 455678999999988732 3699999999999999999998889999998
Q ss_pred EecC
Q 015040 182 KRAL 185 (414)
Q Consensus 182 ~~a~ 185 (414)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8854
No 175
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.41 E-value=0.0014 Score=65.61 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCCCEEEEcCCCCCC-cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDT-TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~-tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~ 78 (414)
|+.+++.|-+.-+|+.+ +.++|...|.+||+|++|.|-.... .|.|+|++..+|-+|.. ....|+++.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 56788888888888885 5689999999999999999877632 79999999999966666 7789999999999
Q ss_pred echhhh
Q 015040 79 RALSRE 84 (414)
Q Consensus 79 ~a~~~~ 84 (414)
|.++..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 988754
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.011 Score=60.58 Aligned_cols=73 Identities=14% Similarity=0.333 Sum_probs=58.1
Q ss_pred cceeEecCCCCCCCH-------HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC-CeE
Q 015040 108 TKKIFVGGLPPTLTE-------DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN-GKL 178 (414)
Q Consensus 108 ~~~lfV~nLp~~~te-------~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~-gr~ 178 (414)
...|+|.++|. +.+ .-|.++|+++|+|+.+.++.+.+++ .+||.|+||.+..+|+.|++.++ +.|+ .++
T Consensus 58 D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 46788999986 332 2356789999999999999888765 89999999999999999999998 4443 455
Q ss_pred EEEE
Q 015040 179 VEVK 182 (414)
Q Consensus 179 i~V~ 182 (414)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.38 E-value=0.017 Score=42.37 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
...+|+|.+|. +++.++|+.+|..| .....|..+.|. .|-|.|.+++.|.+||.
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 34689999996 68889999999998 134456666664 69999999999999996
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.34 E-value=0.0039 Score=57.96 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=55.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCC--------CCcce----EEEEEeCCHHHHHHHHH--cCCC
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTT--------GRPRG----FGFVVFSDPSVLDQVLQ--DKHT 69 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~t--------g~~kG----~aFV~F~~~e~A~~Al~--~~~~ 69 (414)
....|||++||+.++...|+++|..||+|-.|.|.....+ +.++. -+.|+|.+...|+++.+ +.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3578999999999999999999999999999999876554 22222 34589999999998877 4455
Q ss_pred CCCce
Q 015040 70 IDGRP 74 (414)
Q Consensus 70 i~gr~ 74 (414)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 55543
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.26 E-value=0.0026 Score=50.21 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=45.6
Q ss_pred EEEEeCCHHHHHHHHH-cCC--CCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHH
Q 015040 50 GFVVFSDPSVLDQVLQ-DKH--TIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFR 126 (414)
Q Consensus 50 aFV~F~~~e~A~~Al~-~~~--~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~ 126 (414)
|+|+|.+++.|++.++ ..| .++...+.|+...-....... .+ -......++|.|.+||..++|++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k----~q------v~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK----FQ------VFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE----EE------EEEcccCCEEEEeCCCCCCChhhhe
Confidence 6899999999999999 334 455555555432211111000 00 0011256889999999999999998
Q ss_pred HHhh
Q 015040 127 QYFE 130 (414)
Q Consensus 127 ~~F~ 130 (414)
+.++
T Consensus 71 D~Le 74 (88)
T PF07292_consen 71 DKLE 74 (88)
T ss_pred eeEE
Confidence 8765
No 180
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.23 E-value=0.0072 Score=61.75 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH----cCCCCCCceeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTR--FGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ----DKHTIDGRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~--~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~----~~~~i~gr~l~v 77 (414)
+.|.|.|..||+.+.+|+|+.||+. |-++++|.+-.+. -=||+|++.+||+.|.+ +.++|.+|+|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4577889999999999999999974 6788999887764 35999999999999877 567888888865
Q ss_pred ee
Q 015040 78 KR 79 (414)
Q Consensus 78 ~~ 79 (414)
..
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.23 E-value=0.015 Score=50.04 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=45.4
Q ss_pred HHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCC
Q 015040 124 GFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187 (414)
Q Consensus 124 ~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~ 187 (414)
+|.+.|..||+|.=|+++.+ .-+|+|.+-+.|.+|+++...++.++.|+|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 57777888999988888755 369999999999999999999999999999987653
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.21 E-value=0.005 Score=57.31 Aligned_cols=72 Identities=18% Similarity=0.399 Sum_probs=59.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCC--------CCCc----eEEEEEeCCHHHHHHHHHHcC-Cc
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNT--------QRPR----GFGFITFETEDAVDNVLQKVF-HE 173 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t--------g~~r----G~aFVeF~~~e~a~~Al~~~~-~~ 173 (414)
.+-.||+++||+.+...-|+++|..||.|-+|-+.....+ +..+ --+.|||.+...|+++.+.|| +.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999998876554 1222 236899999999999999998 57
Q ss_pred cCCeE
Q 015040 174 LNGKL 178 (414)
Q Consensus 174 i~gr~ 178 (414)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77653
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.20 E-value=0.012 Score=55.82 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=50.2
Q ss_pred HHHHHHHhhccCceeeeEEeecCCCCCCc-eEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 122 EDGFRQYFENYGHVTDVVVMYDQNTQRPR-GFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 122 e~~L~~~F~~~G~I~~v~i~~d~~tg~~r-G~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
|+++++.+++||.|.+|.|..+...-... ---||+|+..++|.+|+-.|+ ..|.++.|...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45788899999999999988764322211 136999999999999999999 6899999988764
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.17 E-value=0.0041 Score=62.41 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=60.4
Q ss_pred cceeEecCCCCCC-CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTL-TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
.+.|-+.-.|+.+ |.++|...|.+||+|..|.|-...+ -|.|+|.+..+|-+|.......|+++.|+|.|-+|
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3455566566654 5688999999999999998865533 58999999999988888888899999999999877
Q ss_pred C
Q 015040 187 K 187 (414)
Q Consensus 187 ~ 187 (414)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 185
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.021 Score=53.26 Aligned_cols=59 Identities=22% Similarity=0.430 Sum_probs=52.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..|+|.||+.-++-|.|.+.|+.|++|+..+++-| ...++.+-.+|+|...-.|.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHH
Confidence 68999999999999999999999999998887776 356777899999999998888887
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.81 E-value=0.038 Score=42.89 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+..+|. +|.+....||.++|+.||.|. |..+.+. .|||.+.+.+.|+.|+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHH
Confidence 4556666 999999999999999999987 4444542 89999999999999887
No 187
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.75 E-value=0.0048 Score=57.50 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=48.6
Q ss_pred HHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 123 DGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 123 ~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+||..+|+ +|++|++++|..... -.-+|-++|.|..+|+|++|++.|+ .-|.+++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444455 899999997765432 3347789999999999999999999 48999999988753
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.69 E-value=0.022 Score=49.05 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=51.0
Q ss_pred CCCEEEEcCCC------CCCcH---HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCc
Q 015040 4 DEGKLFIGGIA------WDTTE---GTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGR 73 (414)
Q Consensus 4 ~~~tLfVgnLp------~~~te---e~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr 73 (414)
...||.|.=+. ...++ .+|.+.|.+||+|+-|+++.+ .-+|+|.+-++|.+||+ +..++.++
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 45677776555 12333 366777888999888887775 47899999999999999 88999999
Q ss_pred eeeeeechhhh
Q 015040 74 PVEAKRALSRE 84 (414)
Q Consensus 74 ~l~v~~a~~~~ 84 (414)
.|+|+...+.-
T Consensus 98 ~l~i~LKtpdW 108 (146)
T PF08952_consen 98 TLKIRLKTPDW 108 (146)
T ss_dssp EEEEEE-----
T ss_pred EEEEEeCCccH
Confidence 99998766543
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.67 E-value=0.0014 Score=68.23 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..-+|||+||...+..+-++.++..+|.|.+++... |+|.+|..+..+.+|+. ....++++.+.++.-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 456899999999999999999999999998887654 99999999999998888 4567777777665432
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhh
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFE 130 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 130 (414)
..-...... ..........-......+.++|.++|..+.+...++.|.
T Consensus 110 q~~~n~~k~-~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 110 QTIENADKE-KSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhhcCcccc-ccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 111111111 111111111111112256677888887777766666664
No 190
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.62 E-value=0.0085 Score=59.35 Aligned_cols=75 Identities=21% Similarity=0.435 Sum_probs=59.2
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC--CccCCeEEEEEecCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF--HELNGKLVEVKRALP 186 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~--~~i~gr~i~V~~a~p 186 (414)
.+|++.||.+.++.+||+.+|...-.-..-.++ ...+|+||.+.++..+.+|++.++ .++.+++++|+...|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999754111111111 125799999999999999999999 489999999999887
Q ss_pred CCC
Q 015040 187 KDA 189 (414)
Q Consensus 187 ~~~ 189 (414)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 763
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.37 E-value=0.061 Score=41.76 Aligned_cols=57 Identities=16% Similarity=0.356 Sum_probs=41.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~ 172 (414)
..+..+|. +|.+....||.++|+.||.|. |..+.|. .|||...+.+.++.|+..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34555565 999999999999999999874 3444332 699999999999999888763
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.27 E-value=0.028 Score=58.06 Aligned_cols=76 Identities=8% Similarity=0.110 Sum_probs=61.0
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC----ccCCeE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH----ELNGKL 178 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~----~i~gr~ 178 (414)
....++.|+|.||-.-.|.-+|++++. .++.|++..|-+- |-.|||.|.+.++|.+.+.+|+. .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345678999999999999999999998 5777777744222 44799999999999999999883 456788
Q ss_pred EEEEecC
Q 015040 179 VEVKRAL 185 (414)
Q Consensus 179 i~V~~a~ 185 (414)
|.|.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888864
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.11 E-value=0.094 Score=44.84 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=53.2
Q ss_pred CCCCCEEEEcCCCCCCc-HH---HHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc-CCCCCCceee
Q 015040 2 ESDEGKLFIGGIAWDTT-EG---TLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD-KHTIDGRPVE 76 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~t-ee---~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~i~gr~l~ 76 (414)
|....||.|.=|..++. .| .|...++.||+|.+|.++-.. .|.|+|+|..+|-+|+.. .....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45567888887766642 23 445566789999999887643 799999999999999983 3456677776
Q ss_pred eeech
Q 015040 77 AKRAL 81 (414)
Q Consensus 77 v~~a~ 81 (414)
..|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 66543
No 194
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.09 E-value=0.059 Score=51.18 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=50.4
Q ss_pred HHHHHHHhhccCCeeEEEEEecCCCCCcc-eEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 19 EGTLRDYFTRFGDVSQVVIMRDKTTGRPR-GFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~~~~~tg~~k-G~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
|+++++.+++||.|..|.|...+.-.... --.||+|+..++|.+|+- +...|.++.|..-+....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 46888899999999999998876432221 247999999999999987 667888998877665443
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.74 E-value=0.022 Score=51.25 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhc-cCCe---eEEEEEecCC-C-CCcceEEEEEeCCHHHHHHHHH
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTR-FGDV---SQVVIMRDKT-T-GRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~-~G~V---~~v~i~~~~~-t-g~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+..+|.|+.||+.+||+++.+.+.. +... ..+.-..... . .....-|+|.|.+.+++...++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 46779999999999999999997776 5544 2222112211 1 1234469999999999888887
No 196
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.68 E-value=0.022 Score=58.83 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCC-----CCCCceeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFT-RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKH-----TIDGRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~-~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~-----~i~gr~l~v 77 (414)
-++.|+|.||-.-+|+-+|++++. ..+.|++.+|=+- |-.|||.|.+.++|.+.++.+| .-+.+.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 468999999999999999999998 5667887755333 3489999999999988777433 235677777
Q ss_pred eechhh
Q 015040 78 KRALSR 83 (414)
Q Consensus 78 ~~a~~~ 83 (414)
.+....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 765543
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.67 E-value=0.056 Score=48.61 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=47.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhc-cCce---eeeEEeec-C-CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC---
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFEN-YGHV---TDVVVMYD-Q-NTQRPRGFGFITFETEDAVDNVLQKVF-HELNG--- 176 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~I---~~v~i~~d-~-~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g--- 176 (414)
...+|.|++||+.+||+++.+.+.. +... ..+.-... . .....-.-|+|.|.+.+++...++.++ +.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999997776 5544 23331111 1 111123569999999999999998886 33322
Q ss_pred --eEEEEEecC
Q 015040 177 --KLVEVKRAL 185 (414)
Q Consensus 177 --r~i~V~~a~ 185 (414)
.+..|++|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 466677764
No 198
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.068 Score=55.20 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=33.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcc----CCeeEEEEEec
Q 015040 2 ESDEGKLFIGGIAWD-TTEGTLRDYFTRF----GDVSQVVIMRD 40 (414)
Q Consensus 2 e~~~~tLfVgnLp~~-~tee~L~e~F~~~----G~V~~v~i~~~ 40 (414)
+..+++|-|-||.|+ +..++|.-+|+.| |.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 456889999999998 8999999999987 46888988775
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.94 E-value=0.02 Score=55.53 Aligned_cols=83 Identities=23% Similarity=0.421 Sum_probs=61.9
Q ss_pred cccceeEecCCCCCCCHHHHH---HHhhccCceeeeEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHcC-CccCCeE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFR---QYFENYGHVTDVVVMYDQNTQ---RPRGFGFITFETEDAVDNVLQKVF-HELNGKL 178 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg---~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~ 178 (414)
+....+||-.|+..+.++++. +.|.+|+.|..|.+..+.... -...-++|+|+.+|+|..||...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345678888999887666553 467788999999998876211 112348999999999999999988 5777888
Q ss_pred EEEEecCCCC
Q 015040 179 VEVKRALPKD 188 (414)
Q Consensus 179 i~V~~a~p~~ 188 (414)
|+..+..++.
T Consensus 155 lka~~gttky 164 (327)
T KOG2068|consen 155 LKASLGTTKY 164 (327)
T ss_pred hHHhhCCCcc
Confidence 8877766654
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.04 Score=53.44 Aligned_cols=78 Identities=17% Similarity=0.439 Sum_probs=56.4
Q ss_pred CEEEEcCCCCCCcHHHHH---HHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeee
Q 015040 6 GKLFIGGIAWDTTEGTLR---DYFTRFGDVSQVVIMRDKTT---GRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEA 77 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~---e~F~~~G~V~~v~i~~~~~t---g~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v 77 (414)
+.+||-.|+..+..+++. ++|.+|+.|..|.+.++..+ .-.-..++|+|..+|+|.+||+ +...++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 568888998886555444 37888899999988876521 1123348999999999999999 556777887766
Q ss_pred eechhh
Q 015040 78 KRALSR 83 (414)
Q Consensus 78 ~~a~~~ 83 (414)
.....+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 554443
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.32 E-value=0.75 Score=38.01 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=49.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
....+.+.-.|..++.++|..+.+.+- .|..++|++|.. ..+-.+.|+|.+.++|++-.+..| +.++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555666677777778877777654 577889988753 245678999999999999999988 44443
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.20 E-value=0.32 Score=49.01 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI 70 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i 70 (414)
.++.|+|=-+|..++..||..|+..+- .|.+|+|+++.. ..+=.++|+|.+.++|....+ |...|
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 368899999999999999999998765 689999999654 344478999999999999998 44433
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.93 E-value=0.9 Score=37.53 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=43.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
...+.+--+|..++.++|..+.+.+- .|+.++|+++.. .++=.++|+|.+.++|++..+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHH
Confidence 34444555566677778877777765 577888888643 466689999999999999987
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.22 E-value=0.39 Score=46.01 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=53.5
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCe-EEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGK-LVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr-~i~V~~a~p~ 187 (414)
.=|.|.++|.. .-.-|..+|++||+|.+......- -+-+|.|.+..+|++||.+....|++. .|-|+....|
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 44566677774 556678899999999887765222 278999999999999999999877764 4556654433
No 205
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.08 E-value=0.053 Score=58.59 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=60.5
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
....+.+||++||+..+++.+|+..|..+|.|.+|.|-+.+- +.-.-|+||.|.+.+.+-+|+..+. ..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345678999999999999999999999999999999865532 2223489999999888888877766 34443344444
Q ss_pred ec
Q 015040 183 RA 184 (414)
Q Consensus 183 ~a 184 (414)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 43
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.65 E-value=0.6 Score=34.81 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=36.2
Q ss_pred CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCce
Q 015040 16 DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRP 74 (414)
Q Consensus 16 ~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~ 74 (414)
.++-++|+..|++|. ..+|+.++. || ||.|.+.++|+++.. +...+..-.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEE
Confidence 478899999999984 444555543 44 899999999999998 334443333
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.62 E-value=0.12 Score=44.74 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=75.6
Q ss_pred EEEcCC-C-CCCcHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechhh
Q 015040 8 LFIGGI-A-WDTTEGTLRDYFTRF-GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 8 LfVgnL-p-~~~tee~L~e~F~~~-G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~~ 83 (414)
..|+.+ . ..++-+.|.+.+.+. .....+.+..-. .++..+.|.++++++++++ ....+++..|.++...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 344444 2 346677777777652 333334433321 2489999999999999999 446778888888777643
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCCC-CCHHHHHHHhhccCceeeeEEeec
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPT-LTEDGFRQYFENYGHVTDVVVMYD 143 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d 143 (414)
......... ....=|.|.+||.. .+++-|+++.+.+|++.++.....
T Consensus 93 ~~~~~~~~~-------------~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVKFE-------------HIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccee-------------ccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 322111000 01233567799987 577889999999999988877544
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.78 E-value=0.71 Score=35.10 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHhhccCc-----eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 118 PTLTEDGFRQYFENYGH-----VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 118 ~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++..+|..++..... |-+|+|..+ |+||+-..+ .++++++.++ ..+.+++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788889888876543 456677533 789998665 6778888888 6999999999875
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.65 E-value=0.61 Score=42.18 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEEecCCC
Q 015040 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVKRALPK 187 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~~a~p~ 187 (414)
...+.|+++|..+..+..+.+++.- .-..|.|.+.++|.+|.+.++ ..+.+..|+|.++.+-
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3558899999999988888777542 258999999999999999988 4899999999987543
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.61 E-value=0.78 Score=44.02 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=52.9
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCc-eeeeeechhhhh
Q 015040 8 LFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGR-PVEAKRALSREE 85 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr-~l~v~~a~~~~~ 85 (414)
|-|=++|+. .-..|..+|++||+|++.+.-.+-+ +-+|.|.+..+|++||. +.+.|++. .|-|+....+..
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngN------wMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGN------WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecCCCCc------eEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 334466654 3346678999999999877653322 89999999999999999 66777654 567777666654
Q ss_pred hcc
Q 015040 86 QHN 88 (414)
Q Consensus 86 ~~~ 88 (414)
...
T Consensus 273 i~~ 275 (350)
T KOG4285|consen 273 ING 275 (350)
T ss_pred hcc
Confidence 443
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.29 E-value=1.3 Score=33.56 Aligned_cols=65 Identities=25% Similarity=0.395 Sum_probs=36.0
Q ss_pred EEEEcC-CCCCCcHHHHHHHhhccCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 7 KLFIGG-IAWDTTEGTLRDYFTRFGD-----VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 7 tLfVgn-Lp~~~tee~L~e~F~~~G~-----V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
+|||.- --..++..+|..++..... |-.|.|..+ |+||+-... .|+++++ +...+.+++|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 456531 1335889999999987643 557777664 889988764 5666666 5678999999998
Q ss_pred ec
Q 015040 79 RA 80 (414)
Q Consensus 79 ~a 80 (414)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 212
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=89.20 E-value=0.18 Score=54.42 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhccCC
Q 015040 3 SDEGKLFIGGIAWD-TTEGTLRDYFTRFGD 31 (414)
Q Consensus 3 ~~~~tLfVgnLp~~-~tee~L~e~F~~~G~ 31 (414)
..+|||+|..||.+ .++++|.++|++...
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 46899999999998 577889999998753
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.77 E-value=1.8 Score=32.24 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 119 TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 119 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
.++-++|+..+.+|.- .+|+.|+. | =||.|.+.++|++|++..+ ..+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4688999999998853 34444532 2 3899999999999999998 5666666654
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.46 E-value=0.29 Score=52.81 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-C--ccCCeEEEEEecCC
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-H--ELNGKLVEVKRALP 186 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~--~i~gr~i~V~~a~p 186 (414)
+..+.|.+-.++-..|..+|.+||.|++++.+++-+ .|.|+|.+.+.|..|++++. + -+.+-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344555566677788999999999999999998866 79999999999999999998 3 46788899999886
Q ss_pred CC
Q 015040 187 KD 188 (414)
Q Consensus 187 ~~ 188 (414)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.01 E-value=1 Score=40.75 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=42.2
Q ss_pred CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc----CCCCCCceeeeeechh
Q 015040 17 TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD----KHTIDGRPVEAKRALS 82 (414)
Q Consensus 17 ~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~----~~~i~gr~l~v~~a~~ 82 (414)
-..+.|+++|..+.++.++.+++.-. -..|.|.+.++|++|... ...+.+..+++-++..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 35689999999999999888887643 689999999999999984 4578888888877643
No 216
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=87.70 E-value=0.55 Score=35.24 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=48.7
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechhh
Q 015040 20 GTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 20 e~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~ 83 (414)
++|++.|+..| +|.+|.-|..+.+..+.-..||+++...+.++++ +...|.+..|+|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~-~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY-KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee-ehHhhCCeEEEEecCCCC
Confidence 57888888888 7889999998878888788899988776644443 456788888999876544
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.60 E-value=0.42 Score=50.35 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=59.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
+..++||+++...|..+-++.++..||.|..+.++. |+|.+|.......+|+..+. ..+++..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 567899999999999999999999999998887763 89999999999999999888 578887776654
No 218
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=87.28 E-value=0.54 Score=35.16 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechhhh
Q 015040 20 GTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALSRE 84 (414)
Q Consensus 20 e~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~~ 84 (414)
++|++.|.+.| +|..|..|..+.+..+--.-||+.+...+... +-+.+.|.++.|+|++...+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcccC
Confidence 57888899888 79999999998887777788898887655555 325567888889998766543
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=0.33 Score=48.13 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=46.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~ 172 (414)
-.+.|-|.++|.....+||..+|+.|..- -+|..+.|. .||-.|.+...|..||..-+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~ 449 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHD 449 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCc
Confidence 45788999999999999999999988752 244444443 599999999999999987543
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.75 E-value=2.3 Score=43.08 Aligned_cols=67 Identities=13% Similarity=0.324 Sum_probs=54.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
...|+|--+|..+|-.||..|...|- .|.+|+|++|... .+=.++|.|.+.++|+...+.++ +.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998654 6889999996432 23357899999999999999998 45544
No 221
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=85.33 E-value=0.13 Score=49.97 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=10.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhh
Q 015040 7 KLFIGGIAWDTTEGTLRDYFT 27 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~ 27 (414)
+|=+...|.++++-+|.+-++
T Consensus 151 ~L~~~k~p~Nin~~~lfe~i~ 171 (465)
T KOG3973|consen 151 TLNFPKQPGNINEWKLFETIR 171 (465)
T ss_pred HcCCCCCCCCchHHHHHHHHH
Confidence 344444455555555444443
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.53 E-value=2.1 Score=32.12 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=45.2
Q ss_pred HHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 123 DGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 123 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
++|++.|...| +|..|.-+..+.+..+--.-||+++...+.+ +.++ +.|.+.+|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCCC
Confidence 56777777666 6788888888777778788899987765533 3344 5788899999876543
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.00 E-value=15 Score=39.76 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHhhccCce-----eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 118 PTLTEDGFRQYFENYGHV-----TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 118 ~~~te~~L~~~F~~~G~I-----~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
..++..+|..++..-..| -.|+|..+ |.||+... +.++++++.+. ..+.+++|.|+.+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 457888888887655443 45666533 78888755 44677888886 6899999999987543
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.50 E-value=7.3 Score=37.23 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=40.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC-------HHHHHHHHHHc
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-------EDAVDNVLQKV 170 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~-------~e~a~~Al~~~ 170 (414)
...|+|.||+.++.-.||+..+.+-+.+ -+.|... -+++-||+.|-+ .+++++++..+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 4679999999999999999999876543 2233221 235679999965 44666666544
No 225
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=82.48 E-value=2.8 Score=34.54 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=61.4
Q ss_pred CCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechhhhhhcccCC
Q 015040 13 IAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALSREEQHNSRS 91 (414)
Q Consensus 13 Lp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~~~~~~~~~~ 91 (414)
||+-++ +|.++|+.-|+|.+|..+.. +.| .+|.--++ ....+++. |.+-...........
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~-- 71 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQ-- 71 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCC-chhhheeeeehhhccCc-EEEccCCCcccEEEe--
Confidence 566554 68999999999998876553 222 12222222 23345555 443322211100000
Q ss_pred CCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhc---cCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 92 GNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFEN---YGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~---~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
..+.....+| -|..+|-.+|+++|++ |--|++-.|.+|-----+-..||..|...
T Consensus 72 -----------gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 72 -----------GTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred -----------cCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0001123344 5788999999999974 55566666665532222334788888653
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=2.8 Score=41.75 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCC
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGD-VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHT 69 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~-V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~ 69 (414)
.+.|-|-++|.....+||...|+.|.. =-+|+.|.+. .||-+|.+...|..||..+|.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~ 449 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHD 449 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCc
Confidence 577889999999888889999999864 2345555553 799999999999999985553
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.21 E-value=3.2 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 123 DGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 123 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
++|++.|+++| +++.|.-+..+.+..+--.-||+.....+.+. .++ +.|.+++|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888777 68889888888877787888999977654444 344 57899999998753
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=79.77 E-value=3.1 Score=34.70 Aligned_cols=47 Identities=13% Similarity=0.391 Sum_probs=27.5
Q ss_pred CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC-HHHHHHHHHH
Q 015040 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQK 169 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~-~e~a~~Al~~ 169 (414)
++-++|++.|..|.+++ |+.+..+. -.+++++|+|.. ..-.+.|+..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998875 55666554 468899999954 4445555443
No 229
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.70 E-value=1.3 Score=48.05 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=55.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCC----CCCCceeeeeech
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKH----TIDGRPVEAKRAL 81 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~----~i~gr~l~v~~a~ 81 (414)
.+..+.|.+-.++...|..+|.+|+.|.+++.+++.+ .|.|+|.+.|.|..|++.++ .+.+-+.+|..++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4455566667788889999999999999999999876 89999999999999988322 3445566666655
Q ss_pred hh
Q 015040 82 SR 83 (414)
Q Consensus 82 ~~ 83 (414)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 43
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=78.47 E-value=8.6 Score=38.55 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=30.0
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcc----CCeeEEEEEec
Q 015040 4 DEGKLFIGGIAWD-TTEGTLRDYFTRF----GDVSQVVIMRD 40 (414)
Q Consensus 4 ~~~tLfVgnLp~~-~tee~L~e~F~~~----G~V~~v~i~~~ 40 (414)
.+..|-|-||.|+ +...+|..+|+.| |+|..|.|...
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3567889999998 8889999999887 46777887764
No 231
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=77.86 E-value=15 Score=36.13 Aligned_cols=8 Identities=13% Similarity=-0.084 Sum_probs=3.3
Q ss_pred CHHHHHHH
Q 015040 121 TEDGFRQY 128 (414)
Q Consensus 121 te~~L~~~ 128 (414)
++++|+.+
T Consensus 199 ~w~~iE~~ 206 (465)
T KOG3973|consen 199 TWPEIEKQ 206 (465)
T ss_pred hHHHHHHH
Confidence 44444433
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.70 E-value=7 Score=37.59 Aligned_cols=80 Identities=11% Similarity=0.298 Sum_probs=61.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecC-------CCCCCceEEEEEeCCHHHHHHH----HHHcC---
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQ-------NTQRPRGFGFITFETEDAVDNV----LQKVF--- 171 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-------~tg~~rG~aFVeF~~~e~a~~A----l~~~~--- 171 (414)
..++.|.+.||..+++-.++...|.+|++|+.|.++.+. +..+.+....+.|-+.+.|-.- |+.+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999776 1223346788999887766533 34333
Q ss_pred CccCCeEEEEEecC
Q 015040 172 HELNGKLVEVKRAL 185 (414)
Q Consensus 172 ~~i~gr~i~V~~a~ 185 (414)
+.+....|.|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 57888888877754
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.68 E-value=7.4 Score=37.04 Aligned_cols=35 Identities=29% Similarity=0.617 Sum_probs=27.0
Q ss_pred ccceeEecCCCC-----------C-CCHHHHHHHhhccCceeeeEEe
Q 015040 107 KTKKIFVGGLPP-----------T-LTEDGFRQYFENYGHVTDVVVM 141 (414)
Q Consensus 107 ~~~~lfV~nLp~-----------~-~te~~L~~~F~~~G~I~~v~i~ 141 (414)
...+|++..||- + .+|+.|+..|+.||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 345778877772 1 3577899999999999988875
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.56 E-value=2.6 Score=35.14 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 015040 7 KLFIGGIAWD---------TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDP 57 (414)
Q Consensus 7 tLfVgnLp~~---------~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~ 57 (414)
++.|-|++.+ ++.++|++.|..|.+++ |+.+.++. -+.++++|+|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 4667788654 35689999999998875 55666543 6789999999763
No 235
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=77.53 E-value=48 Score=28.94 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred hccC-CeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHcCCCCCCce-eeeeechhhhhhcccCCCCCCCCCCCCCC
Q 015040 27 TRFG-DVSQVVIMRDKTT-GRPRGFGFVVFSDPSVLDQVLQDKHTIDGRP-VEAKRALSREEQHNSRSGNFNSGRGSEGG 103 (414)
Q Consensus 27 ~~~G-~V~~v~i~~~~~t-g~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~-l~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 103 (414)
+++| +|..|...+++.+ .+..---.++..+++.+++.++.. +..+-. +++.-+..+
T Consensus 27 s~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~-------------------- 85 (170)
T COG2061 27 SKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLR-------------------- 85 (170)
T ss_pred hhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEecCcCcc--------------------
Confidence 4454 6777777777653 333323333445566666666533 222222 222111111
Q ss_pred CccccceeEecCCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEe--CCHHHHHHHHHHcC
Q 015040 104 GYFKTKKIFVGGLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITF--ETEDAVDNVLQKVF 171 (414)
Q Consensus 104 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF--~~~e~a~~Al~~~~ 171 (414)
.....|.|+.+-.+--.+.+.++=+ .+-.|.++.+....-.+.+ .|.++| ..+++.++|+..++
T Consensus 86 --~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~S--sA~iti~a~~~e~l~ea~~~l~ 152 (170)
T COG2061 86 --EKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGES--SARITIIAVGKEKLDEALRRLK 152 (170)
T ss_pred --eeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCc--ceeEEEEEcChhHHHHHHHHHH
Confidence 1356678887765433333333332 2236777776544333444 455555 67999999998887
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=75.11 E-value=0.66 Score=41.20 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=40.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHcCCccCCeEE
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNT-QRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i 179 (414)
.++++.. +.+...++|.++.. +.+..|.+-...+. ...+|-.||+|.+.+.+.++++.......-..|
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 3455554 22233334444444 56666665443221 256889999999999999988877644443333
No 237
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=74.70 E-value=35 Score=26.10 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=42.2
Q ss_pred eEecCCCCCCCHHHHHHHhhc-------cCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 111 IFVGGLPPTLTEDGFRQYFEN-------YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
|...+||..+|.++|.+...+ +-.|+-++...+.+.+ |-||+.+=.|+|+++++.++..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHcC
Confidence 456789988999998877643 3345555544443322 6789999899999999988764
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=73.68 E-value=2.7 Score=37.49 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=36.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTG--RPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg--~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.++++.. +.+...++|.++.. +.+..|.+.+. ..+ ..+|..||+|.+.+.|.++++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhh
Confidence 3455554 22333334444433 67887776553 233 678999999999999999887
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=73.28 E-value=4.6 Score=39.61 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=22.5
Q ss_pred EEEEeCCHHHHHHHHHcCCCCCCceeeeeech
Q 015040 50 GFVVFSDPSVLDQVLQDKHTIDGRPVEAKRAL 81 (414)
Q Consensus 50 aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~ 81 (414)
|||+|+++++|+.|++..+..+.+.++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC
Confidence 79999999999999994444444444554443
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.25 E-value=9.7 Score=29.82 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 12 GIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 12 nLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
-++.+++..+|++.+++ |+ +|.+|+.+..+. ..--|||++...++|.++..
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 45678999999999997 55 688888877652 22369999999888887754
No 241
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=73.15 E-value=3.3 Score=38.53 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=30.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEE
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVV 36 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~ 36 (414)
..+..+||+-|||..+||+.|.+++.+++.|..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 45678999999999999999999999998665543
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.02 E-value=13 Score=28.67 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=39.5
Q ss_pred EEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 9 FIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 9 fVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
|+=.++.+++..+|++.+++ |+ +|..|+.+..+. ..--|||++...+.|.++-.
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 33456789999999999997 45 677888777652 22269999988877776543
No 243
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.17 E-value=2.5 Score=33.42 Aligned_cols=26 Identities=23% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhh
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFT 27 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~ 27 (414)
....+||.|.+||..++||+|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34679999999999999999997654
No 244
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=68.35 E-value=16 Score=32.73 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=8.4
Q ss_pred HHHHHHhhccCceeeeEE
Q 015040 123 DGFRQYFENYGHVTDVVV 140 (414)
Q Consensus 123 ~~L~~~F~~~G~I~~v~i 140 (414)
++|-++=|-|++|.++.+
T Consensus 89 ~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhcchhhhcccccccEE
Confidence 333333344556655544
No 245
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=67.33 E-value=54 Score=25.07 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=40.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcc-------CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 8 LFIGGIAWDTTEGTLRDYFTRF-------GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~~-------G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
|-..+||..+|.++|.++..+. -.|..++..-+.. +.|-||+.+=.|+|++.++.+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~ 65 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHAR 65 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHH
Confidence 4567899889999988876543 3444444444432 346799999999999988877
No 246
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.82 E-value=7.3 Score=34.88 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=49.3
Q ss_pred ceeEecCCCCCCCH-----HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe-EEEE
Q 015040 109 KKIFVGGLPPTLTE-----DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK-LVEV 181 (414)
Q Consensus 109 ~~lfV~nLp~~~te-----~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr-~i~V 181 (414)
.+|++.+++..+-. ...+.+|.++-+.....+++. ..+..|.|.++++|..|..+++ ..|+++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44666666655432 234455665555554444432 4467789999999999998888 588887 8888
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
-++.+-.
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776644
No 247
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.27 E-value=28 Score=29.99 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 115 GLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 115 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.|++.+.++.|.++.+-+|.|.+.. ..| -.+.|-|.+.+++||+.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4788899999999999999887766 223 3567899999999998764
No 248
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=61.19 E-value=3.1 Score=41.63 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=51.6
Q ss_pred CCEEEEcCCCCCCcHH--------HHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEG--------TLRDYFTR--FGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee--------~L~e~F~~--~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+.+|+..+..+.+.+ +|...|.+ ..++..|...++..+..+++..|++|+..+.+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4678888887765544 99999998 6788889888887778899999999999999999995
No 249
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=60.29 E-value=34 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=42.4
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
+|.|.+|.-.-....|++.+.+.-.|.++.+-... ..+-|+|+. .+++.++|+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46777787777788899999998888888886553 368888864 377778887754
No 250
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.66 E-value=7.7 Score=34.73 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=47.4
Q ss_pred CEEEEcCCCCCC-----cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCc-eeee
Q 015040 6 GKLFIGGIAWDT-----TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGR-PVEA 77 (414)
Q Consensus 6 ~tLfVgnLp~~~-----tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr-~l~v 77 (414)
.+|++.+|+.++ .....+++|.++.+++...+++.. .+.-|.|.+++.|.+|.. ....|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 457888887663 234455677777766666555543 377899999999988876 44577777 5555
Q ss_pred eechh
Q 015040 78 KRALS 82 (414)
Q Consensus 78 ~~a~~ 82 (414)
-.+++
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 44443
No 251
>PF14893 PNMA: PNMA
Probab=56.46 E-value=10 Score=37.53 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc-cCCeeEEEEEec--CCCCCcceEEEEEeCCH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR-FGDVSQVVIMRD--KTTGRPRGFGFVVFSDP 57 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~-~G~V~~v~i~~~--~~tg~~kG~aFV~F~~~ 57 (414)
.+.|.|.+||.+++|++|++.+.. +-+.-..+|... +.+-..+ .|+|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~-aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAK-AALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccc-eeeeecccc
Confidence 567999999999999999998764 222222222211 0111122 788888753
No 252
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=55.12 E-value=69 Score=25.28 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=32.8
Q ss_pred HHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 19 EGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 19 ee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
++.++++++++| +|+++.+..-+ .--...+++.|.+.|.++.-
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l 65 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASL 65 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHH
Confidence 466888888887 78888887644 33578899999998887765
No 253
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=53.98 E-value=15 Score=35.99 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCCC
Q 015040 153 GFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKD 188 (414)
Q Consensus 153 aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~~ 188 (414)
|||+|+++++|+.|++.+.+... +.++|+.|.+++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCCCcc
Confidence 79999999999999997664322 445777765544
No 254
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=53.80 E-value=53 Score=28.08 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=49.0
Q ss_pred CEEEEcCCC----CCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEE-eCCHHHHHHHHH-cCCCCCCceeeee-
Q 015040 6 GKLFIGGIA----WDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVV-FSDPSVLDQVLQ-DKHTIDGRPVEAK- 78 (414)
Q Consensus 6 ~tLfVgnLp----~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~-F~~~e~A~~Al~-~~~~i~gr~l~v~- 78 (414)
..+|+++|. ..+.-.+|+++|++.|- .+|+-... + |-.+++ =.++++.+..|+ ......+..+.|-
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~Gf-~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLGF-TNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcCC-CCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456778773 35889999999999973 44443332 2 233333 233444444444 1222233333332
Q ss_pred -echhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEe
Q 015040 79 -RALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVM 141 (414)
Q Consensus 79 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~ 141 (414)
....-....... .+... ...+.++++|.=|....+.+.+.++-..-...+.+.+.
T Consensus 77 rs~~el~~i~~~n--Pf~~~------~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAAN--PFPWE------AEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT----GGGG------S----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHC--CCccc------ccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 222111111111 11000 01134566666677777888777776654444555553
No 255
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.44 E-value=30 Score=25.40 Aligned_cols=20 Identities=15% Similarity=0.657 Sum_probs=15.9
Q ss_pred HHHHHHHhhccCCeeEEEEE
Q 015040 19 EGTLRDYFTRFGDVSQVVIM 38 (414)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~ 38 (414)
.++|+++|+++|+|.-+-|-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999998865543
No 256
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=52.42 E-value=1e+02 Score=32.36 Aligned_cols=62 Identities=10% Similarity=0.210 Sum_probs=42.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH----HHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE----DAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~----e~a~~Al~~~~ 171 (414)
..+||--.+|+ ..--|++|+...++-.+|.+..-++.++-.|-++|-|+.+ +..++.|+++.
T Consensus 418 ~e~~~~~~fpe--rpgaL~~Fl~~l~~~~~It~f~Yr~~~~~~g~~l~gi~~~~~~~~~~~~~~~~~~ 483 (499)
T TIGR01124 418 NERLYSFEFPE--RPGALLRFLNTLQGYWNISLFHYRNHGADYGRVLAGFQVPDHEPDQFEQFLAELG 483 (499)
T ss_pred CceEEEEeCCC--CccHHHHHHHhcCCCCceeeEEEecCCcccCCEEEEEecCchhHHHHHHHHHHcC
Confidence 35677777876 4567889988888777777666677778888888877642 34444455544
No 257
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=51.86 E-value=77 Score=33.13 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHhhccCCeeEEEEEecCCCCC-cceEEEEEeCCH
Q 015040 15 WDTTEGTLRDYFTRFGDVSQVVIMRDKTTGR-PRGFGFVVFSDP 57 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~-~kG~aFV~F~~~ 57 (414)
+++-..+|++||.+.-.|+++.|+--+++.- -.=+|.|.....
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~ 535 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEG 535 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecc
Confidence 5678899999999999999999987665422 123566655443
No 258
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=51.08 E-value=57 Score=35.25 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred CcHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechhhhhhcccCCCCCC
Q 015040 17 TTEGTLRDYFTRFGDVSQVVIMRDKTT-GRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFN 95 (414)
Q Consensus 17 ~tee~L~e~F~~~G~V~~v~i~~~~~t-g~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~ 95 (414)
+...||+..+..+..|.++-++-.++. .--.-+|||++++-......|.. +++....+. ...
T Consensus 508 igtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~k---------el~~~VR~~------igp-- 570 (626)
T KOG1175|consen 508 IGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTK---------ELVKHVRSV------IGP-- 570 (626)
T ss_pred ecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHH---------HHHHHHHhh------cCc--
Confidence 567899999999999998877764432 22344788888775333333321 000011000 011
Q ss_pred CCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhcc
Q 015040 96 SGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENY 132 (414)
Q Consensus 96 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 132 (414)
-..+.+.+||.+||.+.+-..++.++.+.
T Consensus 571 --------~a~P~~I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 571 --------YAVPRLIVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred --------ccccceeEecCCCCccccchhHHHHHHHH
Confidence 11267889999999999988888877653
No 259
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=50.59 E-value=47 Score=26.57 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHhhcc--------CCeeEEEEEecC-----CCCCcce-EEEEEeCCHHHHHHHHHcCCCCCCcee
Q 015040 13 IAWDTTEGTLRDYFTRF--------GDVSQVVIMRDK-----TTGRPRG-FGFVVFSDPSVLDQVLQDKHTIDGRPV 75 (414)
Q Consensus 13 Lp~~~tee~L~e~F~~~--------G~V~~v~i~~~~-----~tg~~kG-~aFV~F~~~e~A~~Al~~~~~i~gr~l 75 (414)
|.++++++++.++++++ ++|.++...-.+ -.+..+| |.++.|.-+.++.+.|+..-.++...|
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e~Vl 90 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDENVL 90 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCCCeE
Confidence 35677777776665554 355554432111 1234555 578888877777777774444544443
No 260
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=47.84 E-value=67 Score=34.82 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=36.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGF-VVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aF-V~F~~~e~A~~Al~ 65 (414)
+.++|.|..||..++.+.|.+.+.+. +.++ |.-++|..+ + ...| |+++....++.+++
T Consensus 219 ~~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~-~--~v~i~i~l~~~~~~~~~~~ 280 (635)
T PRK09631 219 DEKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTA-E--NVEIEIKLPRGVYASEVIE 280 (635)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCC-C--cEEEEEEECCCCCHHHHHH
Confidence 34789999999999998888865532 4444 555555433 2 2443 45555445555444
No 261
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.65 E-value=44 Score=26.16 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=39.5
Q ss_pred EecCCCCCCCHHHHHHHhhc-cC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 112 FVGGLPPTLTEDGFRQYFEN-YG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 112 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
++..++..++..+|++.+++ |+ .|.+|..+.-+.. .-=|||.+...++|..+..++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 44557888999999999987 44 4667776654421 235999998877777766554
No 262
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=47.24 E-value=1.3e+02 Score=23.05 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHh-hccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEE
Q 015040 115 GLPPTLTEDGFRQYF-ENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182 (414)
Q Consensus 115 nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~ 182 (414)
.+|..+.-+||+... ..||.-.++..+.. --.|-..+.+++++|++.++..-.-+.|+|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEe
Confidence 467777778877665 46888777766533 1567889999999999999964444444443
No 263
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.95 E-value=49 Score=25.41 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=38.6
Q ss_pred eEecCCCCCCCHHHHHHHhhc-cC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 111 IFVGGLPPTLTEDGFRQYFEN-YG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
-|+..++..++..+|++.++. |+ .|.+|..+.-+. ..-=|||.+...+.|..+-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 455667889999999999987 44 466666554432 1235999997766666555443
No 264
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=46.80 E-value=1.3e+02 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEe
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMR 39 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~ 39 (414)
...++|++-+-.|---|.|++..+.-|--..-.+.+
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~ 115 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKE 115 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEecc
Confidence 348999999988877788888777766433333333
No 265
>PHA00019 IV phage assembly protein
Probab=45.79 E-value=1.7e+02 Score=30.10 Aligned_cols=30 Identities=3% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCCCCcHHHHHHHhhccCCeeEEEEEecCC
Q 015040 13 IAWDTTEGTLRDYFTRFGDVSQVVIMRDKT 42 (414)
Q Consensus 13 Lp~~~tee~L~e~F~~~G~V~~v~i~~~~~ 42 (414)
+|.++.+.+|+++|+-++++..+.++-++.
T Consensus 24 ~~l~f~~~dI~~vl~~la~~~g~NiVidp~ 53 (428)
T PHA00019 24 LPVELNNSPIREFVSWYSQQTGKSVVLGPD 53 (428)
T ss_pred eEEEecCCCHHHHHHHHHHhcCceEEECCC
Confidence 345667788888888888888888888764
No 266
>PF15063 TC1: Thyroid cancer protein 1
Probab=45.73 E-value=10 Score=28.79 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=34.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCcee---eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVT---DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~---~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
++--+.||=++++.+.|+.+|++-|..+ +++|+... -.+.++..+||..|
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~------------~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWEC------------AQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhh------------CCCHHHHHHHHHhc
Confidence 4445778888999999999999988754 45555332 14566666777654
No 267
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=45.68 E-value=1.1e+02 Score=22.82 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=44.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
..+|+|.++.-.-....+++.++....|..+.+-.+.. .++|+|++ .+++..|++...
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~------~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKG------TATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccC------eEEEEEcCCcCCHHHHHHHHHHcC
Confidence 45788888887777888999999888899888876643 48999976 566667766655
No 268
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.57 E-value=18 Score=36.48 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---c--CCCCCCceeeeeec
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---D--KHTIDGRPVEAKRA 80 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~--~~~i~gr~l~v~~a 80 (414)
+|.+|++|-- + -- +.+.+.+.+||+ + ...|..+.|.|..+
T Consensus 168 ~i~NIVfMGM---G----EP---L~NydnV~~ai~il~d~~g~~is~R~ITVST~ 212 (371)
T PRK14461 168 RVTNLVFMGM---G----EP---FANYDRWWQAVERLHDPQGFNLGARSMTVSTV 212 (371)
T ss_pred ceeeEEEEcc---C----Cc---hhhHHHHHHHHHHhcCccccCcCCCceEEEee
Confidence 4667776652 1 12 245555556555 2 24667788888654
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.32 E-value=92 Score=21.97 Aligned_cols=53 Identities=8% Similarity=0.159 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH----HHHHHHHH
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDP----SVLDQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~----e~A~~Al~ 65 (414)
||.|.+|.=.--...|++.+.+.-.|.++.+-... ..+-|+|... ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHH
Confidence 57788887777888999999999889988876543 2677888654 45555554
No 270
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=43.78 E-value=1.2e+02 Score=22.73 Aligned_cols=54 Identities=7% Similarity=0.305 Sum_probs=36.0
Q ss_pred ecCCCCCCCHHHHHHHhh-ccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 113 VGGLPPTLTEDGFRQYFE-NYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 113 V~nLp~~~te~~L~~~F~-~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.-.||..++-++|+.... +|... ..+.|....+.+ -+|...+.++.+.|++.+.
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 334677889998887765 45432 244443332222 2899999999999999876
No 271
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=42.86 E-value=1.6e+02 Score=22.98 Aligned_cols=67 Identities=6% Similarity=0.113 Sum_probs=40.3
Q ss_pred eeEecCCCCCCCHHHHHHHhhc-cCcee--eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 110 KIFVGGLPPTLTEDGFRQYFEN-YGHVT--DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~-~G~I~--~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
.|+|..++..++-++|.+.... |--.+ .+.|..-.+.+. -|.|.+.++++.|+.... +.=..-.|+|
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~~n~~~~l~ihv 80 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLYELNKDSELNIHV 80 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHHHhcCcccEEEEe
Confidence 4677778888888777666542 22122 233332223344 488999999999998876 3323444444
No 272
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=41.87 E-value=1.4e+02 Score=28.40 Aligned_cols=77 Identities=8% Similarity=0.172 Sum_probs=43.8
Q ss_pred ccceeEecCCCCCC--CHHHHHHHhhccCceeeeEEe--ecCCCCCCceEEE-EEeCCHHHHHHHHHHcC-----CccCC
Q 015040 107 KTKKIFVGGLPPTL--TEDGFRQYFENYGHVTDVVVM--YDQNTQRPRGFGF-ITFETEDAVDNVLQKVF-----HELNG 176 (414)
Q Consensus 107 ~~~~lfV~nLp~~~--te~~L~~~F~~~G~I~~v~i~--~d~~tg~~rG~aF-VeF~~~e~a~~Al~~~~-----~~i~g 176 (414)
....|.|+.+...- --+.|+++|+++-.|++.-|+ ++.....+. ..+ ++++. +.++.+.... ..-++
T Consensus 128 ~g~~v~lg~p~~~P~~lv~~L~~lf~~~k~V~rAyL~~~~~~~d~~p~-LLI~le~~~--d~e~ii~~ag~~a~~~l~~d 204 (246)
T PRK11611 128 GGESLLLSEVAEPPAQMIDSLTTLFKTIKPVKRAFLASIKENADAQPN-LLIGIEADG--DIEEIIQAAGSVATDTLPGD 204 (246)
T ss_pred CCCEEEecCCccchHHHHHHHHHHHhhcchHHHHHHHHHhccCCCCCc-eEEEEecCC--CHHHHHHHHhHHHHHhCCCC
Confidence 44566776554432 236789999999999876544 333322232 322 34433 3344554432 35578
Q ss_pred eEEEEEecCC
Q 015040 177 KLVEVKRALP 186 (414)
Q Consensus 177 r~i~V~~a~p 186 (414)
..|.|.....
T Consensus 205 ~~IDi~~v~~ 214 (246)
T PRK11611 205 EPIDICQVKE 214 (246)
T ss_pred CceeEEEecC
Confidence 8888887654
No 273
>PF14893 PNMA: PNMA
Probab=41.83 E-value=8.9 Score=37.99 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=32.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhc-cCceeeeEEee---cCCCCCCceEEEEEeCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFEN-YGHVTDVVVMY---DQNTQRPRGFGFITFET 159 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~rG~aFVeF~~ 159 (414)
..+.|.|.+||.+|++++|++.+.. +-++-..+|+. .++.+ .--|+|||..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeeccc
Confidence 5678999999999999999998864 32333333321 11111 2357788754
No 274
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=41.64 E-value=67 Score=27.97 Aligned_cols=60 Identities=8% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcc----C-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRF----G-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~----G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~ 66 (414)
|+.+....||=..-.. .|+.+.+.+.+. + .|.+|.+... .+||.||+....+++..++.+
T Consensus 1 ~~~~~~~WYvv~t~sG-~E~~V~~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~ 65 (153)
T PRK08559 1 MKPEMSMIFAVKTTAG-QERNVALMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRG 65 (153)
T ss_pred CCCCCCcEEEEEeECC-hHHHHHHHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhc
Confidence 5666666666544222 355555554432 2 2555555442 689999999988888888874
No 275
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=41.53 E-value=2.5e+02 Score=30.34 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHhhccCCeeEEEEEecCCCC-CcceEEEEEeC
Q 015040 15 WDTTEGTLRDYFTRFGDVSQVVIMRDKTTG-RPRGFGFVVFS 55 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G~V~~v~i~~~~~tg-~~kG~aFV~F~ 55 (414)
..+...+|++.+.++-.|.++.++-.+... ...-.|||+..
T Consensus 523 ~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~ 564 (647)
T PTZ00237 523 NKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLK 564 (647)
T ss_pred EEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEec
Confidence 467889999999999889988777544321 23446788775
No 276
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=41.29 E-value=1.7e+02 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=28.4
Q ss_pred EEEEcCCCCC--CcHHHHHHHhhccCC-e---eEEEEEecCCCCCcceEEEEEeC
Q 015040 7 KLFIGGIAWD--TTEGTLRDYFTRFGD-V---SQVVIMRDKTTGRPRGFGFVVFS 55 (414)
Q Consensus 7 tLfVgnLp~~--~tee~L~e~F~~~G~-V---~~v~i~~~~~tg~~kG~aFV~F~ 55 (414)
.|+|--|..+ -|..+|+.+|++++- + -.|..+.++ .++|+|.
T Consensus 96 aiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 96 AIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred EEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 4566666554 467899999999874 2 246666665 5777775
No 277
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.90 E-value=17 Score=36.27 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeeee
Q 015040 28 RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEAK 78 (414)
Q Consensus 28 ~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v~ 78 (414)
+...|.+|.+|-. +.+ +.+.+.+.++++ +...|..+.|.|.
T Consensus 138 ~~~~i~nIVfmGm---GEP-------l~N~d~vl~ai~~l~~~~~i~~r~itiS 181 (344)
T PRK14464 138 RRRAVKKVVFMGM---GEP-------AHNLDNVLEAIDLLGTEGGIGHKNLVFS 181 (344)
T ss_pred hcCCCCEEEEecc---Ccc-------cCCHHHHHHHHHHhhchhcCCCceEEEe
Confidence 3456888888762 222 134455555544 3334556666653
No 278
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=40.72 E-value=40 Score=34.46 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=36.9
Q ss_pred CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC--CHHHHHHHHHcCC----CCCCceeeeeechh
Q 015040 16 DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS--DPSVLDQVLQDKH----TIDGRPVEAKRALS 82 (414)
Q Consensus 16 ~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~--~~e~A~~Al~~~~----~i~gr~l~v~~a~~ 82 (414)
++.+.+|+++|+.+.....+.|+.++. ..+..-+.|. +.++|-.+|...+ ..++..|.|....+
T Consensus 7 ~~~~~~l~dvL~~la~~~g~NiVi~~~---V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~~ 76 (418)
T TIGR02515 7 NFQDIPVRTVLQVIAEFTNLNIVVSDS---VQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLDE 76 (418)
T ss_pred EEeCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHHH
Confidence 445667777777777667777776543 2344555665 3445555554222 34677777765543
No 279
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.69 E-value=13 Score=37.21 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=49.5
Q ss_pred cceeEecCCCCCCCHH--------HHHHHhhc--cCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 015040 108 TKKIFVGGLPPTLTED--------GFRQYFEN--YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQK 169 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~--------~L~~~F~~--~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~ 169 (414)
.+.+|+..+....+.+ +|..+|.. +.++..|..-+|.....+++..|++|...+.+++.+..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 3567777776655544 89999998 67788888888876677889999999999999999953
No 280
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=40.58 E-value=2.8e+02 Score=25.09 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=18.0
Q ss_pred EEEEEeCCHHHHHHHHHcCCCCCCceeeeee
Q 015040 49 FGFVVFSDPSVLDQVLQDKHTIDGRPVEAKR 79 (414)
Q Consensus 49 ~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~ 79 (414)
-|=|-+++.+.+-++-+-.-.|+...++|+.
T Consensus 80 NAPIylenk~qIGKVDEIfG~i~d~~fsIK~ 110 (215)
T KOG3262|consen 80 NAPIYLENKEQIGKVDEIFGPINDVHFSIKP 110 (215)
T ss_pred CCceeecchhhhcchhhhcccccccEEEEec
Confidence 4557777777766665533345555555544
No 281
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.29 E-value=34 Score=32.83 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPS 58 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e 58 (414)
...|+|+|||.++.-.||+..+.+.+-+- +.|.. +-+.+-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCcc
Confidence 35699999999999999999999875322 22211 234568999997643
No 282
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.74 E-value=27 Score=34.87 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGD-VSQVVIMRDKTT--GRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~-V~~v~i~~~~~t--g~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..++|.|..||+.+++++|.+.+..|-+ |....+...... ......|+|.|..++++.....
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 3578999999999999999999888753 444433321111 1135678999999999666655
No 283
>PRK10905 cell division protein DamX; Validated
Probab=39.22 E-value=46 Score=32.61 Aligned_cols=61 Identities=7% Similarity=0.220 Sum_probs=38.2
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEE--EeCCHHHHHHHHHHcCCcc
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFI--TFETEDAVDNVLQKVFHEL 174 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV--eF~~~e~a~~Al~~~~~~i 174 (414)
.+|-|.- ..+++.|++|..+++ +....+......++. -|-.| .|.+.++|++||++|..+|
T Consensus 248 YTLQL~A---~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 248 YTLQLSS---SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred eEEEEEe---cCCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 4444443 356788888888874 454445443333332 12222 5789999999999998544
No 284
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=38.92 E-value=60 Score=33.64 Aligned_cols=59 Identities=12% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEE-EEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGF-VVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aF-V~F~~~e~A~~Al 64 (414)
.++|.|..||..++.+++++.+... ..|..|.-+++.. ....+..| |+++....++..+
T Consensus 232 ~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des-~~~~~vrivI~lk~~~~~~~~~ 294 (445)
T smart00434 232 RNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDES-HDRTGVRIVIELKRGAMAEVVL 294 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhcc-CCCCceEEEEEECCCcCHHHHH
Confidence 4689999999999999888876542 3444444444422 11233555 4454444444443
No 285
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=38.10 E-value=3.7e+02 Score=25.89 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=17.1
Q ss_pred EEEEEeCCHHHHHHHHHHcCC
Q 015040 152 FGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 152 ~aFVeF~~~e~a~~Al~~~~~ 172 (414)
--...|-+.+++++++++...
T Consensus 203 ~~iPlFF~kedL~~~l~k~~k 223 (274)
T PF04278_consen 203 RIIPLFFDKEDLQAALEKAKK 223 (274)
T ss_dssp EEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEEecHHHHHHHHHHHHH
Confidence 456678899999999998864
No 286
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.73 E-value=1.4e+02 Score=26.05 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCC---------CCcce-EEEEEeCCHHHH
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTT---------GRPRG-FGFVVFSDPSVL 60 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~t---------g~~kG-~aFV~F~~~e~A 60 (414)
.|..+|++.-++.-++|++.++..++- .++.+|.+-+.+.+ ..-+. |-+|.|++-+..
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 456899999999999999999998865 45666766554432 12233 788888876543
No 287
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=37.49 E-value=2e+02 Score=24.37 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCC-eEEEEEec
Q 015040 120 LTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNG-KLVEVKRA 184 (414)
Q Consensus 120 ~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~g-r~i~V~~a 184 (414)
.+.+.+++.+++-+ .++.+....+ -..|.|+++|+-.+|.+.+...+.. ..|.+..+
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 46677888887665 3445444322 5789999999999999988876654 46665554
No 288
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=37.12 E-value=2.4e+02 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhhccCCeeEEEEEe--cCCCCCcceEEEEEeC
Q 015040 15 WDTTEGTLRDYFTRFGDVSQVVIMR--DKTTGRPRGFGFVVFS 55 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G~V~~v~i~~--~~~tg~~kG~aFV~F~ 55 (414)
..+..++|++.+.++-.|.++.++- +.........++|.+.
T Consensus 470 ~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~ 512 (600)
T PRK08279 470 ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA 512 (600)
T ss_pred cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence 4678899999999988898887743 2222222345666554
No 289
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=36.85 E-value=2.1e+02 Score=22.61 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhhccCcee---eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEE
Q 015040 119 TLTEDGFRQYFENYGHVT---DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEV 181 (414)
Q Consensus 119 ~~te~~L~~~F~~~G~I~---~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V 181 (414)
+++-++|++...+.-.|. .+.|....+.+ -+|.+.+.++.+.|++.+...-...+|+|
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl 84 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRI 84 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEE
Confidence 567777766655422332 44443322333 48999999999999998753333334433
No 290
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=36.75 E-value=85 Score=32.51 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=34.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEE-EeCCHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFV-VFSDPSVLDQVL 64 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV-~F~~~e~A~~Al 64 (414)
++|.|..||..++.++|.+.+... ..+..|.-++|..+.. ++.|| +++....++..+
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~--~vrivI~lk~~~~~~~~~ 286 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE--GIRFVIELKRGAMAEVVL 286 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC--ceEEEEEECCCccHHHHH
Confidence 689999999999998888876542 2333344444543322 45554 455444444443
No 291
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=36.58 E-value=2.7e+02 Score=25.36 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=31.7
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechhh
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~~ 83 (414)
.+.-|.+++++ +.|.++++|.+.|+ +.+.+....|++...++.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPS 79 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcc
Confidence 45556666665 47999999999999 677778777877655543
No 292
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=36.52 E-value=1.2e+02 Score=34.07 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc---cCCeeEEEEEecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTR---FGDVSQVVIMRDKTTGRPRGFGF-VVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~---~G~V~~v~i~~~~~tg~~kG~aF-V~F~~~e~A~~Al~ 65 (414)
+.++|.|..||..++.+.|.+-+.+ -+.|. |.-+++.. . +..-| |+++...+++..++
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s-~--~~vrivI~lk~~~~~~~~~~ 301 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNT-A--ADVEILVHLAPGVSPDKTID 301 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecC-C--CceEEEEEeCCCCCHHHHHH
Confidence 4678999999999888877766643 34555 55556532 2 22333 44544444444444
No 293
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=36.33 E-value=1.1e+02 Score=25.62 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHhhcc-CC----eeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015040 15 WDTTEGTLRDYFTRF-GD----VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62 (414)
Q Consensus 15 ~~~tee~L~e~F~~~-G~----V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~ 62 (414)
..++.+||+|-+.+. -. |.-.-+...--.+++.+||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 357889999877653 22 222222222235788999987 666665554
No 294
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.05 E-value=26 Score=22.80 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHhhccC
Q 015040 15 WDTTEGTLRDYFTRFG 30 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G 30 (414)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 295
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=35.35 E-value=1e+02 Score=26.76 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
|..+.-+|+ ++..++..+|++.+++ |+ .|..|..+..+. + .--|||.+....+|..+.
T Consensus 80 E~~N~yvF~--Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 80 EDNNTLVFI--VDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred hhCCEEEEE--EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 334455555 4568899999999987 54 577777776543 1 126999997766655443
No 296
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.61 E-value=1.1e+02 Score=24.17 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCCCCcHHHHHHHhhc-cC-CeeEEEEEecC
Q 015040 12 GIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDK 41 (414)
Q Consensus 12 nLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~ 41 (414)
-++.+++..||+++|+. |+ +|.+|..+.-+
T Consensus 26 ~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 26 EVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred EECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 45779999999999997 55 57777766643
No 297
>PRK11901 hypothetical protein; Reviewed
Probab=34.38 E-value=68 Score=31.59 Aligned_cols=62 Identities=8% Similarity=0.213 Sum_probs=39.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEE--EeCCHHHHHHHHHHcCCcc
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFI--TFETEDAVDNVLQKVFHEL 174 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV--eF~~~e~a~~Al~~~~~~i 174 (414)
..+|-|.. ...+++|++|.+++. +..++|.+-...++. -|..| +|.+.++|++|++.|...|
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34444433 356888888888775 466666654433332 23333 5789999999999998543
No 298
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.24 E-value=1.1e+02 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc----CCCCCCceeeeeec
Q 015040 32 VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD----KHTIDGRPVEAKRA 80 (414)
Q Consensus 32 V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~----~~~i~gr~l~v~~a 80 (414)
|.+|++|-- |-.+..|++...+.+.|.+ ...|..+.|.|...
T Consensus 177 i~nVvfmGm-------GEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~ 222 (373)
T PRK14459 177 LSNVVFMGM-------GEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTV 222 (373)
T ss_pred eeEEEEecC-------CcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECc
Confidence 667777541 2233334444444444443 13455567777654
No 299
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.06 E-value=1.8e+02 Score=20.86 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=31.5
Q ss_pred CHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 121 TEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 121 te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.-.+|-++|.+.+ .|..+.+....+ +.+..|.+++.+.+.++|++..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCC
Confidence 4567778887665 477776644322 3566667788878888887765
No 300
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.93 E-value=7 Score=40.69 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=46.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
..++|||.|++++++-++|..+++.+--+.++.+..+....+..-+..|+|+..-.++.|+.+++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 56789999999999999999999987666666554443333445578899976544444444443
No 301
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.89 E-value=6.2 Score=41.09 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC---HHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD---PSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~---~e~A~~Al~ 65 (414)
..|+|||.||+++++-++|..+++.+--+..+.+.......+.+-+..|+|+- ...|.-||+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 35789999999999999999999998777766665544444555677888854 444555554
No 302
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=33.88 E-value=1e+02 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCc
Q 015040 118 PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHE 173 (414)
Q Consensus 118 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~ 173 (414)
..++++||+-+.++.+ .+.+.|.+||++++.+
T Consensus 73 ~~i~~edI~lv~~q~g------------------------vs~~~A~~AL~~~~gD 104 (115)
T PRK06369 73 VEIPEEDIELVAEQTG------------------------VSEEEARKALEEANGD 104 (115)
T ss_pred CCCCHHHHHHHHHHHC------------------------cCHHHHHHHHHHcCCc
Confidence 3588999988888765 2678899999988743
No 303
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=33.87 E-value=1.4e+02 Score=28.16 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCC
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGD 31 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~ 31 (414)
|+..++++|+ .|+.-++++-|+-|.++++-
T Consensus 154 ~Dh~nr~aY~-~lS~Rad~~lLe~fc~~~gy 183 (318)
T COG4874 154 MDHPNRTAYA-GLSQRADRELLEVFCEQIGY 183 (318)
T ss_pred ecccchhhhh-hhhcccCHHHHHHHHHHcCC
Confidence 4566778887 57888899888888888773
No 304
>PRK00110 hypothetical protein; Validated
Probab=33.64 E-value=2.7e+02 Score=26.41 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=32.4
Q ss_pred EEEEcCCCCC--CcHHHHHHHhhccCC-e---eEEEEEecCCCCCcceEEEEEeCC--HHHH-HHHHH
Q 015040 7 KLFIGGIAWD--TTEGTLRDYFTRFGD-V---SQVVIMRDKTTGRPRGFGFVVFSD--PSVL-DQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~--~tee~L~e~F~~~G~-V---~~v~i~~~~~tg~~kG~aFV~F~~--~e~A-~~Al~ 65 (414)
.|.|--|..+ -|..+|+.+|++++- + -.|..+.++ .+.|+|.. .+++ +.||+
T Consensus 96 aiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~~~~~d~~~e~aie 156 (245)
T PRK00110 96 AIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIEPLDEDELMEAALE 156 (245)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeCCCCHHHHHHHHHh
Confidence 4566666554 467899999999863 3 246666665 46777752 3333 34555
No 305
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=33.59 E-value=13 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=22.5
Q ss_pred CceEEEEEeCC-HHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 149 PRGFGFITFET-EDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 149 ~rG~aFVeF~~-~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
++||+||..++ .+++--.-+.|+..+++-+|.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 33333334556667788888887765
No 306
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=33.17 E-value=55 Score=25.88 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCC----CCC------cceEEEEEeCCHHH
Q 015040 12 GIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKT----TGR------PRGFGFVVFSDPSV 59 (414)
Q Consensus 12 nLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~----tg~------~kG~aFV~F~~~e~ 59 (414)
.++.+++..||+++|++ |+ +|++|..+.-+. .+. ..--|+|++...+.
T Consensus 26 ~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 26 EVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 45779999999999996 55 577777666431 111 11368888887643
No 307
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.68 E-value=44 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.3
Q ss_pred eCCHHHHHHHHHHcCCccC
Q 015040 157 FETEDAVDNVLQKVFHELN 175 (414)
Q Consensus 157 F~~~e~a~~Al~~~~~~i~ 175 (414)
.++++++++-+++++.+|+
T Consensus 59 ~~s~eev~~ele~mga~in 77 (88)
T COG4009 59 VESEEEVERELEDMGAEIN 77 (88)
T ss_pred cCCHHHHHHHHHHhCchhc
Confidence 3679999999999886554
No 308
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=31.67 E-value=3.2e+02 Score=23.10 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCCEEEEcCCCCC---CcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWD---TTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~---~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
++-.|-|...... .+.++|++++++-+ .++++....+ ...|.|+++|+-.+|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~ 91 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKE 91 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHH
Confidence 4455666665333 56678888888776 4555544332 57889999888766665
No 309
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.42 E-value=84 Score=30.58 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+.|.|||..++...|.++++..-.+..+.+| -..|.|++.+.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm----------------~QkEvA~Rl~A 145 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLM----------------FQKEFALRLLA 145 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeee----------------ehHHHHHHHhc
Confidence 47789999999999999988653333333322 24688888876
No 310
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=31.21 E-value=1.9e+02 Score=20.92 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHhhccCC-ee----EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 20 GTLRDYFTRFGD-VS----QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 20 e~L~e~F~~~G~-V~----~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+.+..+++++|- |+ .+.++.. .....-..+|+|.+.++|.++.+
T Consensus 9 ~~~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 9 EAVPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 345667777773 22 2344443 23344589999999999998875
No 311
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=30.39 E-value=3.6e+02 Score=28.39 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=35.7
Q ss_pred cHHHHHHHhh----ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 015040 18 TEGTLRDYFT----RFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66 (414)
Q Consensus 18 tee~L~e~F~----~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~ 66 (414)
+.-+|..+|. .+|.|+++.+...+. .+.+...++.|.+.++|.+++..
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHH
Confidence 3456777776 578899888877654 34455778999999999998874
No 312
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=30.26 E-value=1.8e+02 Score=19.85 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=30.3
Q ss_pred HHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 19 EGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 19 ee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
-.+|.+.|.+.+ .|+.+.+.... ..+....+++++.+.|.++|
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 345666777666 67777766542 34567888899999998886
No 313
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.16 E-value=11 Score=38.13 Aligned_cols=77 Identities=9% Similarity=-0.170 Sum_probs=55.0
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+++.|+..||..+++++|.-+|+.++.|..+.+.+..+.+..+-.+||+-.+. ++..+|+.+. ..+.+..++|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 34567889999999999999999999999888766655555566777776543 3455555555 45666666665543
No 314
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=30.04 E-value=89 Score=32.42 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+.++|.|..||..++.++|.+.+.+. +.|. |.-++|..+.. - .-.|+++...+++.+|.
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~~-v-~i~I~Lk~~~~~~~vl~ 280 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDL-P-HIEIKLPKGIYAKDLLR 280 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCCC-c-eEEEEECCCCCHHHHHH
Confidence 35789999999999998888876543 4453 44455543322 1 22355665556666665
No 315
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=29.81 E-value=2.1e+02 Score=22.29 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=39.9
Q ss_pred CcHHHHHHHhhccCCeeEEEEEe--cCCC---CCcceEE----EEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 17 TTEGTLRDYFTRFGDVSQVVIMR--DKTT---GRPRGFG----FVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 17 ~tee~L~e~F~~~G~V~~v~i~~--~~~t---g~~kG~a----FV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
++.++|.++++.--+-+-|++.. +... ...+-|+ .|.|-+.++.+.+|+ +...|....|+..+.+
T Consensus 1 m~a~eII~~I~~skKkTPVKvYv~G~l~~~~~~~~~~fg~~~~~vvfGd~~~i~~~Le~~~~~I~~y~iE~drRN 75 (83)
T PF08503_consen 1 MDAEEIIRYIKNSKKKTPVKVYVKGDLAGIDFEDVKVFGSGNFGVVFGDWDEIKPFLEANKDKIEDYRIENDRRN 75 (83)
T ss_dssp THHHHHHHHHHHCTTB-EEEEEEEESCTC---TTSEEEEESSEEEEEEEHHHHHHHHHHTTTTEEEEEEEE-GBS
T ss_pred CCHHHHHHHHHhCCCCCCEEEEEeeeecCCChhheEEEeCCCcEEEEecHHHHHHHHHhchhhCcEEEEEecCcc
Confidence 35677778887665544444433 2111 1233333 388999999999999 6677787777775433
No 316
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=29.41 E-value=2.4e+02 Score=30.21 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCc-cCCeEEEEEecCCCC
Q 015040 150 RGFGFITFETEDAVDNVLQKVFHE-LNGKLVEVKRALPKD 188 (414)
Q Consensus 150 rG~aFVeF~~~e~a~~Al~~~~~~-i~gr~i~V~~a~p~~ 188 (414)
+|-| +.|+++|++.+||..-..+ -.+..|.|.+.-|+-
T Consensus 401 ~G~A-~VF~see~a~~ai~~g~i~i~~gdVvVIRyeGPkG 439 (571)
T PRK06131 401 EGRA-VVFEGYEDYKARIDDPDLDVDEDTVLVLRNAGPKG 439 (571)
T ss_pred Eeee-EEECCHHHHHHHHhCCCcCCCCCeEEEEeCCCCCC
Confidence 4444 5799999999999887753 468888898876653
No 317
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.35 E-value=17 Score=36.86 Aligned_cols=74 Identities=7% Similarity=-0.210 Sum_probs=52.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.|+..||..+++++|.-+|+.++.|..+.+.+.-+.+..+-.+||...+ +++..+|+ .-..+++..+.+..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 456788999999999999999999999988887765556666678887665 34455555 223455555554443
No 318
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.21 E-value=1.2e+02 Score=33.62 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=34.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEE-EeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFV-VFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV-~F~~~e~A~~Al 64 (414)
..+|.|..||..++.++|.+.+.+. ..+..|.-++|..+ + +++.|| +++....++.++
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~-~-~~vrivi~lk~~~~~~~~~ 309 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESD-R-NGIRIIIELKKDANAEKIL 309 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccC-C-CceEEEEEECCCCCHHHHH
Confidence 3579999999999998888876543 23444444555433 2 245554 454444444444
No 319
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=29.07 E-value=2.7e+02 Score=21.39 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=34.4
Q ss_pred eEecCCCCCCCHHHHHHHhh-------ccCceeeeEEeecCCCCC-Cce--EE-EEEeCCHHHHHHHH
Q 015040 111 IFVGGLPPTLTEDGFRQYFE-------NYGHVTDVVVMYDQNTQR-PRG--FG-FITFETEDAVDNVL 167 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~tg~-~rG--~a-FVeF~~~e~a~~Al 167 (414)
|.+-.|...++++++.++++ +.-.|+.+.+-++..... .++ ++ +++|+++++.++-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 34445777888888755542 344567777655543222 223 34 56899999887654
No 320
>PRK11901 hypothetical protein; Reviewed
Probab=28.40 E-value=1.2e+02 Score=29.93 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHc
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFV--VFSDPSVLDQVLQD 66 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV--~F~~~e~A~~Al~~ 66 (414)
.-+|-|-.+ .+++.|++|.++.. +..++|.+....++.- |.+| .|.+.++|++|+..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~s 303 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIAT 303 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHh
Confidence 344544443 46888999988875 4667776655555543 3332 47999999999983
No 321
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=28.19 E-value=2.1e+02 Score=23.12 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCcHHHHHHHhhc-cCCeeEEEEEecCCC----CCcceEEEEEeCCHHHHHHH
Q 015040 16 DTTEGTLRDYFTR-FGDVSQVVIMRDKTT----GRPRGFGFVVFSDPSVLDQV 63 (414)
Q Consensus 16 ~~tee~L~e~F~~-~G~V~~v~i~~~~~t----g~~kG~aFV~F~~~e~A~~A 63 (414)
+.+..+|++.+.+ +..-.++.|+..-.| +++.|||.| |++.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677788876654 453333334333232 467777766 6666665543
No 322
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=27.89 E-value=5.6e+02 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCC
Q 015040 150 RGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187 (414)
Q Consensus 150 rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~ 187 (414)
+|-| +.|++++++.+||+... .-.+..|.|.+.-|+
T Consensus 398 ~GpA-~VF~see~a~~ai~~g~-I~~gdVvViRyeGPk 433 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAILAGK-IKAGDVVVIRYEGPK 433 (552)
T ss_pred eeeE-EEECCHHHHHHHHhcCC-CCCCeEEEEeCCCCC
Confidence 4444 67999999999999854 334558888887665
No 323
>PRK09224 threonine dehydratase; Reviewed
Probab=27.75 E-value=7.4e+02 Score=26.06 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=40.1
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH----HHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE----DAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~----e~a~~Al~~~~ 171 (414)
...||.-.+|+ ..-.|++|++..++-.+|....-++.++..|-++|-++.. ++.++.|+++.
T Consensus 422 ~e~~~~~~fPe--rpGal~~Fl~~l~~~~~It~f~Yr~~~~~~g~vlvgi~~~~~~~~~~~~~l~~~~ 487 (504)
T PRK09224 422 DERLYRFEFPE--RPGALLKFLSTLGTHWNISLFHYRNHGADYGRVLAGFQVPDADEPEFEAFLDELG 487 (504)
T ss_pred ceEEEEEeCCC--CCCHHHHHHHhcCCCCeeEEEEEccCCcccccEEEEEecChhhHHHHHHHHHHcC
Confidence 35677777887 4556888888777655555544456677788888887653 34445555544
No 324
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=27.65 E-value=3.2e+02 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=28.0
Q ss_pred eeEecCCCCCCCHHHHH---HHhhccCceeeeEEeecCCCCCCceEEEEE
Q 015040 110 KIFVGGLPPTLTEDGFR---QYFENYGHVTDVVVMYDQNTQRPRGFGFIT 156 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~~rG~aFVe 156 (414)
..++.+||..+.+.+++ +++++. .+.+|.|..+.+.+.+.|++.+.
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L 236 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVL 236 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEE
Confidence 56778898888776654 445442 23456666665556666765543
No 325
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.53 E-value=42 Score=32.10 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=27.4
Q ss_pred CCEEEEcCCCCC------------CcHHHHHHHhhccCCeeEEEEEe
Q 015040 5 EGKLFIGGIAWD------------TTEGTLRDYFTRFGDVSQVVIMR 39 (414)
Q Consensus 5 ~~tLfVgnLp~~------------~tee~L~e~F~~~G~V~~v~i~~ 39 (414)
..||++..||-. -+|+.|+..|+.||+|..|.|..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 457888888732 36889999999999988877643
No 326
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.21 E-value=48 Score=31.03 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=27.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeee
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDV 138 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v 138 (414)
...+||+-|||..+|++.|+++...++.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 46789999999999999999999988765544
No 327
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=1.5e+02 Score=24.19 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=31.7
Q ss_pred CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 121 TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 121 te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
-+.+|.++++++| |.+..|..|.++. .=|+++|++|.++.-++|...
T Consensus 25 vWPE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a~~ 71 (105)
T COG3254 25 VWPELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMAET 71 (105)
T ss_pred ccHHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHhCC
Confidence 3467778888876 5667777665433 449999999766665555443
No 328
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=27.02 E-value=1.5e+02 Score=29.67 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 32 VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 32 V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
|.+|.+|--- --+.-|++...|.+.+. +...+..|.|.|..+
T Consensus 153 i~NVV~MGMG-------EPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTs 196 (349)
T COG0820 153 ISNVVFMGMG-------EPLLNLDNVVKALEIINDDEGLGLSKRRITVSTS 196 (349)
T ss_pred eeeEEEecCC-------chhhhHHHHHHHHHhhcCcccccccceEEEEecC
Confidence 7788877631 22233333334444443 223455566766543
No 329
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=84 Score=28.05 Aligned_cols=61 Identities=13% Similarity=-0.051 Sum_probs=34.4
Q ss_pred cceeEecCCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
...|-|.=-|..++-++|.++|= .+-+-+.-+--.|.-|+.. .=|-|.+.|.++.|.+.+.
T Consensus 75 aEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~GtQYR---S~I~~~s~eq~k~A~~s~e 136 (191)
T KOG1635|consen 75 AEVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDVGTQYR---SGIYTYSPEQEKLARESKE 136 (191)
T ss_pred ceEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcccceee---eeeeeCCHHHHHHHHHHHH
Confidence 34566777788899999999884 4433333232223222222 2245566666666665555
No 330
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.69 E-value=2.5e+02 Score=22.02 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=32.4
Q ss_pred HHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 122 EDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 122 e~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
++.++++++++| +++++.+... +..-...+|+.|.++|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456777787765 6777777643 345578889999888887765554
No 331
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.61 E-value=1e+02 Score=32.29 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=43.2
Q ss_pred EEcCCCCCC---cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCcee
Q 015040 9 FIGGIAWDT---TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPV 75 (414)
Q Consensus 9 fVgnLp~~~---tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l 75 (414)
+|+||+.-. ....|.++-++||+|-.+++=.. -.|...+.+.|++|+. +...+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 567776543 34566677779999998887543 3688899999999998 6677888775
No 332
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=26.61 E-value=1.7e+02 Score=26.83 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=34.0
Q ss_pred CCHHHHHHH---hhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 120 LTEDGFRQY---FENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 120 ~te~~L~~~---F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
+++++|++| ..+|| +...|++|.++..++-..|+.=.|.+.+.+|++.+.
T Consensus 39 i~~~~lk~F~k~AkKyG--V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~ 91 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYG--VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFS 91 (204)
T ss_pred cCHhhHHHHHHHHHHcC--CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHH
Confidence 566666655 45676 345566777766555455555588999999998876
No 333
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=26.58 E-value=81 Score=32.41 Aligned_cols=56 Identities=11% Similarity=0.297 Sum_probs=32.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGF-VVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aF-V~F~~~e~A~~Al~ 65 (414)
.+|.|..||..++.+++++.+.+. +.|. |.-++|. |.+ ++-| |+++...+++..++
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~ 276 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILE 276 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHH
Confidence 699999999999988888877653 4566 6666665 444 4555 45555444444444
No 334
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.56 E-value=1.1e+02 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
+|++|+|..-...++.|++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47889998877678999999999987
No 335
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=44 Score=32.57 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=25.9
Q ss_pred cCCCCCCCHHHHHHHhhccCcee-eeEEeecCCCCCCceEEEEEeCCH
Q 015040 114 GGLPPTLTEDGFRQYFENYGHVT-DVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 114 ~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
.+.|..++++||+.+..---++. ...|+.|..- +.-...|.+|.-.
T Consensus 241 ~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~-~f~~~~~~ef~Pv 287 (331)
T KOG2014|consen 241 GRDPGETSEEDLERLLQIRNELLESETIIPDELL-EFLSLIFTEFAPV 287 (331)
T ss_pred CCCCccccHHHHHHHHHHHHhhccccccCCchHH-HHHHhcccccCch
Confidence 35566789999888775322222 3555555432 2334566777543
No 336
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.24 E-value=2.2e+02 Score=25.22 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 115 GLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 115 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
+|+..+.++-|.++.+-+|.|.+. .+. --.+.|-+.+.+++||+.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 689999999999999999987665 221 13778899999999998875
No 337
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=26.16 E-value=25 Score=28.14 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=29.0
Q ss_pred ecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC-HHHHHHHHHHcC
Q 015040 113 VGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQKVF 171 (414)
Q Consensus 113 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~-~e~a~~Al~~~~ 171 (414)
|..||+.++.+.||+..-+ ..+-.+|++.+.+ |||.|+. .+.++.+|.+..
T Consensus 26 l~~LP~la~S~~~KD~I~q-----~m~~F~dp~~G~p---AF~s~~QQ~~mlq~~l~k~~ 77 (120)
T PRK15321 26 LLALPESASSETLKDSIYQ-----EMNAFKDPNSGDS---AFVSFEQQTAMLQNMLAKVE 77 (120)
T ss_pred HHhCCcccCcHHHHHHHHH-----HHHHhCCCCCCCc---ccccHHHHHHHHHHHHHhcC
Confidence 4567777776666643321 1112245555654 9999976 445566666543
No 338
>PRK05560 DNA gyrase subunit A; Validated
Probab=26.09 E-value=1.4e+02 Score=33.40 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFV-VFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV-~F~~~e~A~~Al~ 65 (414)
.++|.|..||..++.++|.+.+... ..+..|.-++|..+ ..++.|| +++...+++..++
T Consensus 251 ~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~--~~~~~~~i~~~~~~~~~~~~~ 313 (805)
T PRK05560 251 REAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESD--RDGMRIVIELKRDAVPEVVLN 313 (805)
T ss_pred CcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCC--CCceEEEEEECCCCCHHHHHH
Confidence 5689999999999988877766432 33444444455433 2345554 4444444444443
No 339
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.06 E-value=78 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCC
Q 015040 149 PRGFGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 149 ~rG~aFVeF~~~e~a~~Al~~~~~ 172 (414)
.+||-|||=.+++++.+|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 589999999999999999998875
No 340
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=25.91 E-value=2.5e+02 Score=20.79 Aligned_cols=50 Identities=8% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhh-ccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC
Q 015040 118 PTLTEDGFRQYFE-NYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 118 ~~~te~~L~~~F~-~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~ 172 (414)
..++-++|++... +|... ..+.|....+.+ -+|...+.++.+.|++.+..
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~-----d~v~l~sd~Dl~~a~~~~~~ 70 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDG-----DLVTISSDEDLEEAIEEARR 70 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHhh
Confidence 7788888887775 45432 244443222211 58999999999999998753
No 341
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=25.83 E-value=30 Score=29.49 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhcc-CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCC
Q 015040 119 TLTEDGFRQYFENY-GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187 (414)
Q Consensus 119 ~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~ 187 (414)
..+.+.|.+.+.+. .....+.|..- ..++..+.|+++++++++++.-...+++..|.++.-.|.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 35666666666542 33224444322 135789999999999999998887888888888766543
No 342
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=1.4e+02 Score=28.23 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=34.1
Q ss_pred EEEEcCCCCC--CcHHHHHHHhhccCC-ee---EEEEEecCCCCCcceEEEEEeC----CHHHH-HHHHH
Q 015040 7 KLFIGGIAWD--TTEGTLRDYFTRFGD-VS---QVVIMRDKTTGRPRGFGFVVFS----DPSVL-DQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~--~tee~L~e~F~~~G~-V~---~v~i~~~~~tg~~kG~aFV~F~----~~e~A-~~Al~ 65 (414)
-|+|-.|..+ -|-.+|+.+|.+.|- +- +|..|.++ .+.|+|. ++++. +.||+
T Consensus 96 aiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~-------kGvi~~~~~~~~ed~l~e~~ie 158 (241)
T COG0217 96 AIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR-------KGVIVVEKNEIDEDELLEAAIE 158 (241)
T ss_pred EEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec-------cEEEEECCCCCCHHHHHHHHHH
Confidence 4677778654 577899999999863 32 68888876 3555554 44443 34455
No 343
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.52 E-value=1.4e+02 Score=33.49 Aligned_cols=58 Identities=16% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEE-eCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVV-FSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~-F~~~e~A~~Al 64 (414)
.++|.|..||..+..++|.+.+.+. ..+..|.=++|..+. .++-||. ++....++..+
T Consensus 248 ~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~--~~~~~~i~~k~~~~~~~~~ 309 (800)
T TIGR01063 248 REAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDR--EGIRIVIELKRDAVAEVVL 309 (800)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCC--CceEEEEEeCCCCCHHHHH
Confidence 3679999999999988777666533 234444444553322 2455544 33333344433
No 344
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=25.44 E-value=1.6e+02 Score=28.30 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=9.8
Q ss_pred EeCCHHHHHHHHHHc
Q 015040 156 TFETEDAVDNVLQKV 170 (414)
Q Consensus 156 eF~~~e~a~~Al~~~ 170 (414)
+-++++++++|.+.+
T Consensus 151 ~i~~~~d~~~a~~~i 165 (263)
T COG0351 151 KIKTEEDMKEAAKLL 165 (263)
T ss_pred ccCCHHHHHHHHHHH
Confidence 556777777774444
No 345
>PHA03008 hypothetical protein; Provisional
Probab=24.90 E-value=84 Score=28.68 Aligned_cols=40 Identities=15% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEec
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRD 40 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~ 40 (414)
|+.....+||.||..--+..-|+.+|++|..+.+|.++..
T Consensus 17 ~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg 56 (234)
T PHA03008 17 IDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPG 56 (234)
T ss_pred CcccccEEEEecccccccccHHHHHHhhccccceEEEccC
Confidence 3445667899999988899999999999999988877763
No 346
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.82 E-value=2.3e+02 Score=20.93 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=36.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDP 57 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~ 57 (414)
.+|.|.++.=.--...+++.++....|.++.+-..+ +.++|+|.+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCC
Confidence 467788777666778999999999889988887764 3589999883
No 347
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=24.68 E-value=26 Score=34.23 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=20.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceee
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTD 137 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~ 137 (414)
++++||+ -..|.-+.|+..|.+-+.+.+
T Consensus 240 ~S~~LFL---GYaVAa~Rlk~Q~d~~gi~vd 267 (443)
T COG3048 240 NSRTLFL---GYAVAAQRLKKQFDEQGIVVD 267 (443)
T ss_pred chhhhhh---hHHHHHHHHHHHHHhcCceec
Confidence 4566664 456777889999988877664
No 348
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=24.51 E-value=2e+02 Score=21.56 Aligned_cols=53 Identities=15% Similarity=0.412 Sum_probs=36.3
Q ss_pred cCCCCCCCHHHHHHHhh-ccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 114 GGLPPTLTEDGFRQYFE-NYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 114 ~nLp~~~te~~L~~~F~-~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
-.++..++.++|++..+ .|+.. ..+.|....+.+ -.|...+.++.+.|++.+.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHH
Confidence 34667778888887775 45543 445544332222 3899999999999999886
No 349
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.35 E-value=73 Score=30.40 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=43.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEe--CCHHHHHHHHHHcCCccC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITF--ETEDAVDNVLQKVFHELN 175 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF--~~~e~a~~Al~~~~~~i~ 175 (414)
.-+++|.+.+++++.-.+.|++++..+-.|+--...++.+. ..+ .--|.. ++++.++++++++...+.
T Consensus 178 ~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~ 247 (255)
T COG1058 178 YYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEV-RLR-ELVIRAEARDEEEADALLRWLEGRLR 247 (255)
T ss_pred eEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCce-ecc-ceEEEEecCCHHHHHHHHHHHHHHHH
Confidence 35678888899998888889999887744333333322221 011 112555 789999999988765443
No 350
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.17 E-value=1.5e+02 Score=27.69 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=13.7
Q ss_pred eEEEEEeCCHHHHHHHHH
Q 015040 48 GFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 48 G~aFV~F~~~e~A~~Al~ 65 (414)
.+++|...+.+.++.+.+
T Consensus 97 ~~~~v~~d~~~~g~~~~~ 114 (272)
T cd06313 97 VHSFLAPDNYFMGASVAQ 114 (272)
T ss_pred eEEEECCCcHHHHHHHHH
Confidence 356788888888777776
No 351
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=24.11 E-value=2e+02 Score=32.00 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEE
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVV 53 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~ 53 (414)
..+|.|..||..++.++|.+.+.+. ..+..|.-++|.. .+..++.||.
T Consensus 258 ~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~s-~~~~~~r~~i 308 (742)
T PRK05561 258 RWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDES-DRENPVRIVI 308 (742)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceecc-CCCCCEEEEE
Confidence 5679999999999988888876543 2344444455543 2222255543
No 352
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.02 E-value=2.6e+02 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 20 GTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 20 e~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
++|+++++++| +.-+.+.-. + .=++.|+.+++.+.++++++
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs---G-~G~~v~~l~~~~~~~~~v~~ 77 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS---G-GGPTVFALCKDEDDAERVAE 77 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT---S-SSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC---C-CCCeEEEEECCHHHHHHHHH
Confidence 46677777787 444544332 0 02378888889998888876
No 353
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.95 E-value=3.5e+02 Score=21.74 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCCCcHHHHHHHhhccC--------CeeEEEEEecCC-----CCCcce-EEEEEeCCHHHHHHHHHcCCCCCCce
Q 015040 13 IAWDTTEGTLRDYFTRFG--------DVSQVVIMRDKT-----TGRPRG-FGFVVFSDPSVLDQVLQDKHTIDGRP 74 (414)
Q Consensus 13 Lp~~~tee~L~e~F~~~G--------~V~~v~i~~~~~-----tg~~kG-~aFV~F~~~e~A~~Al~~~~~i~gr~ 74 (414)
|.++++++++.++.+.+. .|.++.-.-.+. .+..+| |.++.|....++.+.|+..-.++..-
T Consensus 10 l~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~~~~~V 85 (108)
T PRK00453 10 LRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELERLFRINEDV 85 (108)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEEEEEEEeCHHHHHHHHHHhCCCCCe
Confidence 456677777777666553 344433211111 122334 46678877777777776433344433
No 354
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=23.93 E-value=1.1e+02 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCH
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSDP 57 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~~ 57 (414)
+|++|+|.+....++.|-++-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 588999999888899999999999864
No 355
>PHA01632 hypothetical protein
Probab=23.70 E-value=68 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.7
Q ss_pred EEEcCCCCCCcHHHHHHHhhc
Q 015040 8 LFIGGIAWDTTEGTLRDYFTR 28 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~ 28 (414)
|.|-.+|..-||++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999987754
No 356
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.59 E-value=2.7e+02 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred ceeEecCCCCC--------CCHHHHHHHhhccCcee--eeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 109 KKIFVGGLPPT--------LTEDGFRQYFENYGHVT--DVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 109 ~~lfV~nLp~~--------~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
..|-|.|-|.- .|.+|..+||.+|..-. +++|+........+-..-..|.|+.+
T Consensus 170 yalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~lnDp~a 233 (433)
T COG5520 170 YALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILNDPKA 233 (433)
T ss_pred eEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhccccEEecchhcccccccccccccCHhH
Confidence 44556665532 36788888988876432 35554332222233344445555443
No 357
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=23.55 E-value=1.2e+02 Score=27.20 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=33.2
Q ss_pred HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH-HHHHHcCCCCCCceeee
Q 015040 19 EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVL-DQVLQDKHTIDGRPVEA 77 (414)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A-~~Al~~~~~i~gr~l~v 77 (414)
.++|++.|++.-.|..|..+.+. .--.|-.++|+....... ..+++--..+..+-|.+
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv 115 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDL 115 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEe
Confidence 56788888888777777776653 234566777777553222 22222223445555544
No 358
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=23.19 E-value=88 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=17.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhc
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTR 28 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~ 28 (414)
|++.+.++++.|| |.+|+++|++.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHHH
Confidence 5677889999999 55666666554
No 359
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.09 E-value=1.3e+02 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
+|++|+|.+-...++.|++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888888766668899999999987
No 360
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=22.94 E-value=4.8e+02 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=19.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEe
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMR 39 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~ 39 (414)
+.|-++| ..+++..|+.++|..--.+.-|.+..
T Consensus 30 ~~vs~Gn-~~dv~~~d~l~~~~~D~~t~~I~ly~ 62 (138)
T PF13607_consen 30 YVVSVGN-EADVDFADLLEYLAEDPDTRVIVLYL 62 (138)
T ss_dssp EEEE-TT--SSS-HHHHHHHHCT-SS--EEEEEE
T ss_pred EEEEeCc-cccCCHHHHHHHHhcCCCCCEEEEEc
Confidence 3466677 45899999999998865555444433
No 361
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=22.90 E-value=1.7e+02 Score=29.30 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 15 WDTTEGTLRDYFTRFGD-VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G~-V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+....+|+.+.+-|+. |.+.. +.+ ...-|-+|+|.+.++|.+.++
T Consensus 12 l~Fr~pE~eala~lF~~~i~~sq---~~~--t~~PF~iv~~~s~~~Ar~~~k 58 (421)
T KOG2671|consen 12 LDFRLPELEALASLFGLQIDESQ---KLH--TTSPFFIVEFESEEIARNLIK 58 (421)
T ss_pred hccchHHHHHHHHHHhhhhhhhh---hhc--CCCceEEEEeCchHHHHHHHH
Confidence 34455566666666652 32221 111 123499999999999999887
No 362
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=22.67 E-value=3.5e+02 Score=20.98 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHhhc-cCC----eeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 015040 15 WDTTEGTLRDYFTR-FGD----VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62 (414)
Q Consensus 15 ~~~tee~L~e~F~~-~G~----V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~ 62 (414)
.+.+.++|++.+.+ +.. |.-..|...--.+++.+||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 45567788877764 332 222222222223567777776 677766654
No 363
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=22.61 E-value=2.7e+02 Score=29.30 Aligned_cols=60 Identities=20% Similarity=0.392 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCc-HHHHHHHhhccCCeeEEEEEecCCCCCcceEEE----EEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTT-EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGF----VVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~t-ee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aF----V~F~~~e~A~~Al~ 65 (414)
.--||.+-.|-+.+ -++|++.+++. .+.+..+...+.|....||+| +-.-..|..+.-|+
T Consensus 297 ~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLe 361 (603)
T COG0481 297 KPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLE 361 (603)
T ss_pred CceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhhhHHHHHHHHHHHH
Confidence 45688888898854 48999999987 566677777777777666665 33344444444444
No 364
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.41 E-value=3e+02 Score=20.36 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=40.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCC
Q 015040 8 LFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDG 72 (414)
Q Consensus 8 LfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~g 72 (414)
|.|.-....=--.+|...+.+.+ .|.++.+...+..+......-|+..+.++.+..|+....+.+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~ 74 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPG 74 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTT
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Confidence 33333333334467777787776 688888877543444555556777999999999886555544
No 365
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.30 E-value=34 Score=25.47 Aligned_cols=38 Identities=11% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 123 DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 123 ~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
++|.+.|..+....++.-+ .+|..|++.++|-.++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHh
Confidence 5777777655444333222 4899999988777766554
No 366
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=22.12 E-value=65 Score=30.66 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=29.5
Q ss_pred EEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 7 KLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
++-|-++|.+ +|.+++.+++... ++ .. . ..+|.|.+.+.+..|.+
T Consensus 9 ~~~ilg~~v~~~~~~~~~~~i~~~--~~-----~~-~------~~~vv~~N~e~~~~a~~ 54 (253)
T COG1922 9 RINILGLPVDNVTWDEAVALILGR--IE-----QG-K------PTTVVTLNAEKVLLARK 54 (253)
T ss_pred eEEEecceeecCCHHHHHHHHHHH--Hh-----cC-C------ccEEEEcCHHHHHHhcc
Confidence 5778888876 6666666665543 11 11 1 34888999988887776
No 367
>PRK12338 hypothetical protein; Provisional
Probab=21.97 E-value=2.5e+02 Score=27.71 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.7
Q ss_pred EEEEEeCCHHHHHHHHHHcC
Q 015040 152 FGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 152 ~aFVeF~~~e~a~~Al~~~~ 171 (414)
+=.|+..+++++++++++|.
T Consensus 288 ~Hti~a~~~e~l~~i~~~L~ 307 (319)
T PRK12338 288 SHRICAPDEESLNRIIEELE 307 (319)
T ss_pred EEEEEeCCHHHHHHHHHHHH
Confidence 45688999999999988876
No 368
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=21.88 E-value=4.1e+02 Score=21.07 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCCCCCcHHHHHHHh----------hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeee
Q 015040 12 GIAWDTTEGTLRDYF----------TRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAK 78 (414)
Q Consensus 12 nLp~~~tee~L~e~F----------~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~ 78 (414)
+||.+++.+++.++- .+-|.+..+..+. ++...++++.-+|.++..+.|.....+.=..|+|.
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~----G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~Vt 82 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVV----GRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVT 82 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEec----CCcceEEEEECCCHHHHHHHHHhCCCccceeeeEE
Confidence 688898887766544 3347777776644 45566889999999999998885554444445443
No 369
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=21.83 E-value=2.7e+02 Score=33.28 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=21.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR 28 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~ 28 (414)
..+|.|..||..+..+++++++..
T Consensus 885 ~~~i~ITELP~~~~t~~y~e~l~~ 908 (1388)
T PTZ00108 885 DGTVEITELPIGKWTEDYKEFLES 908 (1388)
T ss_pred CCeEEEEeCCCcccHHHHHHHHHH
Confidence 458999999999999999998876
No 370
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=90 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.9
Q ss_pred eEEEEEeCCHHHHHHHHHHcC
Q 015040 151 GFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 151 G~aFVeF~~~e~a~~Al~~~~ 171 (414)
=|..++|.+.++.++|..++-
T Consensus 67 vFsW~~Y~skq~rDA~~~kmM 87 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKMM 87 (117)
T ss_pred EEEEEEcCchhHHHHHHHHhh
Confidence 378999999999999988764
No 371
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=21.27 E-value=2.5e+02 Score=20.45 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHhhccCceeeeEEeecCCC-CCCceEEEEEeCCHHHHHHHHHH-cC-CccCC
Q 015040 124 GFRQYFENYGHVTDVVVMYDQNT-QRPRGFGFITFETEDAVDNVLQK-VF-HELNG 176 (414)
Q Consensus 124 ~L~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFVeF~~~e~a~~Al~~-~~-~~i~g 176 (414)
||++.+.++-.|.++.++...+. ....-+|||+. +++++.+.+.. +. .++..
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P~ 55 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVPR 55 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-S
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCcceee
Confidence 56778888888888776544321 22456889988 55666666554 33 34443
No 372
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.10 E-value=3.2e+02 Score=19.47 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=31.0
Q ss_pred cHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 18 TEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 18 tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.-.+|-++|.+.+ .|+.+.+..... +...-|.+.+.+.|.++|+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHH
Confidence 4567778888776 677777655322 3566677788888888887
No 373
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=20.96 E-value=1.7e+02 Score=23.24 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=33.9
Q ss_pred CCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 015040 13 IAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66 (414)
Q Consensus 13 Lp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~ 66 (414)
+.+.+++..|...|...+ +-+-..+.+|.- +.+|.|.|.+.+.+..|.++
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~ 70 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQK 70 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHH
Confidence 345677777776666554 233344444433 56899999999999999884
No 374
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=20.96 E-value=3e+02 Score=19.12 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEe
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMR 39 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~ 39 (414)
+|.|.-....-.-.+|.++|.+++ .|.++....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~ 35 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGP 35 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeee
Confidence 444533222223457778888876 567776544
No 375
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=1.8e+02 Score=26.08 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=34.7
Q ss_pred ceeEecCCCCCCCHHHHHHHhhc-cCceeeeEEeecCCCCCCceEEEEEeCCHH---HHHHHHHHcCC-ccCCeEEEEEe
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFEN-YGHVTDVVVMYDQNTQRPRGFGFITFETED---AVDNVLQKVFH-ELNGKLVEVKR 183 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e---~a~~Al~~~~~-~i~gr~i~V~~ 183 (414)
-.|.|.=-|..++-++|.++|=+ +-+-..-+--.|.-++-. --|-+.+++ .|++.++++.. ....++|.++.
T Consensus 58 E~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~GtqYR---s~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 58 EAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYR---SAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEEeCCccccHHHHHHHHheecCCCCCCccCCcccccce---eEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 34555545666788887776632 222211122222222211 123334444 44455555553 55566666665
Q ss_pred cC
Q 015040 184 AL 185 (414)
Q Consensus 184 a~ 185 (414)
..
T Consensus 135 ~p 136 (174)
T COG0225 135 EP 136 (174)
T ss_pred ec
Confidence 43
No 376
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=20.80 E-value=8.8e+02 Score=25.85 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCC
Q 015040 150 RGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPK 187 (414)
Q Consensus 150 rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~ 187 (414)
+|-| +.|++++++.+||+.... -.+..|.|.+.-||
T Consensus 383 ~G~A-~VF~see~a~~ai~~g~i-~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPA-KVFESEEEALEAILGGKI-KEGDVVVIRYEGPK 418 (535)
T ss_pred EEeE-EEECCHHHHHHHHhcCCC-CCCeEEEEeCCCCC
Confidence 4444 569999999999988653 35668888887665
No 377
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=2.1e+02 Score=22.92 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.4
Q ss_pred CCceEEEEEeCCHHHHHHHHH
Q 015040 148 RPRGFGFITFETEDAVDNVLQ 168 (414)
Q Consensus 148 ~~rG~aFVeF~~~e~a~~Al~ 168 (414)
.+.-...|||+|.++|..+..
T Consensus 51 ~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 51 RPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred CcccEEEEEcCCHHHHHHHhc
Confidence 345578999999999887754
No 378
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.68 E-value=1.8e+02 Score=23.29 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEEe----cCCCCCcceEEEEEeC
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGD-VSQVVIMR----DKTTGRPRGFGFVVFS 55 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~-V~~v~i~~----~~~tg~~kG~aFV~F~ 55 (414)
..|+.+||..+-+.++...-+.+.. +.++.|.. .+......|++++.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688999999888776655544432 22344433 2344566777766554
No 379
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.52 E-value=1.3e+02 Score=28.86 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=33.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
-...|+|||..++..-|..+++..-.+..+.+|.. .|.|++.+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q----------------kEva~Rl~A 139 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ----------------KEVAERLVA 139 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH----------------HHHHHHHhC
Confidence 45679999999999999999987655555555553 477777766
No 380
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.50 E-value=1.4e+02 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 134 HVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 134 ~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
+|++|+|.+-...++-+++|-|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766668889999999977
No 381
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.43 E-value=3.8e+02 Score=30.42 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCC
Q 015040 149 PRGFGFITFETEDAVDNVLQKVFH 172 (414)
Q Consensus 149 ~rG~aFVeF~~~e~a~~Al~~~~~ 172 (414)
-|||-|||-.-+.+++.||+-+-.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~n 232 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRN 232 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhh
Confidence 489999999999999999987753
No 382
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=20.27 E-value=68 Score=25.87 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHhhccCceeeeEEeecCC-CCCCceEEEEEeCCHHHHHHHHHHcC----Ccc-CCeEEEEEecC
Q 015040 122 EDGFRQYFENYGHVTDVVVMYDQN-TQRPRGFGFITFETEDAVDNVLQKVF----HEL-NGKLVEVKRAL 185 (414)
Q Consensus 122 e~~L~~~F~~~G~I~~v~i~~d~~-tg~~rG~aFVeF~~~e~a~~Al~~~~----~~i-~gr~i~V~~a~ 185 (414)
.+.|.++|++...|..+.+..-.. ...+.=+-.|+|+. ++.++++.++. ..+ .+..|.+-...
T Consensus 21 ~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~-~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~ 89 (108)
T PF14581_consen 21 LAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDG-EDIEEIFQEIGRAARPYLPDGWPVDFVLLD 89 (108)
T ss_pred HHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccC-hhHHHHHHHHHHHhhhcCCCCceEEEEEcc
Confidence 366888999999998877655444 34444444567766 34444433332 223 33666665543
No 383
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=20.24 E-value=1.4e+02 Score=27.97 Aligned_cols=54 Identities=24% Similarity=0.481 Sum_probs=35.4
Q ss_pred cCCCCCCcHHHHHH-HhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 11 GGIAWDTTEGTLRD-YFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 11 gnLp~~~tee~L~e-~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+.|+.+--|++|+. .|+..++...+.+.+++.|+-+. ..|-.-+++|+..++++
T Consensus 13 g~i~~~~a~~~i~~~~~~~~~~~~k~D~~R~~RtG~pE-vv~a~gKt~eqi~~i~~ 67 (254)
T COG1691 13 GKISLEEAEEQIKSLAFESLGEFAKLDIHREKRTGFPE-VVFAPGKTPEQIVEIVE 67 (254)
T ss_pred CCccHHHHHHHHhhhhhhhhchhhhccchhhccCCCce-EeecCCCCHHHHHHHHH
Confidence 34444444566666 66777777777777777665444 45555578888888777
No 384
>PRK07868 acyl-CoA synthetase; Validated
Probab=20.23 E-value=9.8e+02 Score=27.47 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC-----CHHHHHHHHHcCCCCCCcee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS-----DPSVLDQVLQDKHTIDGRPV 75 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~-----~~e~A~~Al~~~~~i~gr~l 75 (414)
+.+....|-+++-. +..++|++++.++..|.++.++-.+.....+-.|||+.+ ++++..+.+.. +...++
T Consensus 855 ~GR~dd~Ik~~G~~--I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~---l~~y~v 929 (994)
T PRK07868 855 VDRRGSVIRTARGP--VYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS---LPVGLG 929 (994)
T ss_pred eccCCCEEEeCCce--EcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh---CCCCcC
Q ss_pred eeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccC--ceeeeEEeecCCCCCCceEE
Q 015040 76 EAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYG--HVTDVVVMYDQNTQRPRGFG 153 (414)
Q Consensus 76 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~rG~a 153 (414)
+...++|..||.+.+-.-++..+.+.. +........++++ .+
T Consensus 930 -------------------------------P~~i~~v~~lP~T~sGKi~r~~L~~~~lp~p~~~~~~~~~~~-----~~ 973 (994)
T PRK07868 930 -------------------------------PDIVHVVPEIPLSATYRPTVSALRAAGIPKPGRQAWYFDPET-----NR 973 (994)
T ss_pred -------------------------------CeEEEEeCCCCCCccccEehHHHHhcCCCCCCCceEEEcCCC-----Ce
Q ss_pred EEEeCCHHHHH
Q 015040 154 FITFETEDAVD 164 (414)
Q Consensus 154 FVeF~~~e~a~ 164 (414)
|+....+..++
T Consensus 974 ~~~~~~~~~~~ 984 (994)
T PRK07868 974 YRRLTPAVRAE 984 (994)
T ss_pred eEECCHHHHHH
No 385
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.18 E-value=2.7e+02 Score=25.35 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=30.8
Q ss_pred CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 17 TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 17 ~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+.++.+++++.+..-. +.|..| +...|-..+...+.++|.++++
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHH
Confidence 46788888888876433 444444 3444445667799999999998
No 386
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.04 E-value=1.4e+02 Score=31.27 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=45.0
Q ss_pred EecCCCCCCCH---HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEE
Q 015040 112 FVGGLPPTLTE---DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLV 179 (414)
Q Consensus 112 fV~nLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i 179 (414)
+|+||+.-... ..|.++-++||+|-.+++-.. -.|...+.+.|++|+.+.+.++.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 67787754333 456666678999998887422 368889999999999999988888876
No 387
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=20.03 E-value=83 Score=25.84 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHhhccCCeeEEE
Q 015040 15 WDTTEGTLRDYFTRFGDVSQVV 36 (414)
Q Consensus 15 ~~~tee~L~e~F~~~G~V~~v~ 36 (414)
.++|+++|++.|.+|-.-.+|-
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIa 64 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIA 64 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeE
Confidence 5799999999999995544333
Done!