Query 015040
Match_columns 414
No_of_seqs 433 out of 2416
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.9E-36 1.3E-40 272.1 20.0 177 3-192 11-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 5.5E-36 1.9E-40 264.3 15.5 166 3-188 1-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 4E-35 1.4E-39 270.6 19.0 166 4-188 14-182 (213)
4 2qfj_A FBP-interacting repress 100.0 1.6E-34 5.5E-39 265.5 15.8 180 4-191 27-209 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 1.1E-33 3.7E-38 248.6 18.5 163 6-186 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-33 5.1E-38 248.7 17.9 162 4-184 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 3.3E-33 1.1E-37 245.7 19.8 162 4-184 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 1.2E-32 4E-37 244.3 19.7 164 3-185 1-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 2.3E-32 7.9E-37 243.2 11.6 163 3-188 11-175 (175)
10 2yh0_A Splicing factor U2AF 65 100.0 2.9E-31 1E-35 240.4 18.7 182 3-190 2-197 (198)
11 2g4b_A Splicing factor U2AF 65 100.0 3.9E-31 1.3E-35 234.2 16.5 158 3-185 2-172 (172)
12 3smz_A Protein raver-1, ribonu 100.0 3E-30 1E-34 247.6 20.9 170 3-189 93-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 3.7E-30 1.3E-34 246.7 20.3 175 3-185 7-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.5E-30 8.5E-35 237.5 16.5 174 4-184 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 4.9E-30 1.7E-34 239.1 18.8 175 3-187 32-228 (229)
16 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-30 1.1E-34 248.2 17.1 171 4-188 116-292 (292)
17 1qm9_A Polypyrimidine tract-bi 100.0 3.6E-30 1.2E-34 233.9 15.6 174 4-187 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 5.1E-29 1.7E-33 240.0 17.5 160 2-190 38-200 (292)
19 3smz_A Protein raver-1, ribonu 100.0 1.4E-28 4.9E-33 235.9 19.1 155 3-189 20-177 (284)
20 3sde_A Paraspeckle component 1 100.0 1.2E-28 4.1E-33 234.3 16.8 155 3-189 20-181 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.7E-23 6E-28 183.4 16.0 149 34-191 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 1E-21 3.4E-26 163.4 9.0 108 4-124 4-113 (115)
23 3pgw_S U1-70K; protein-RNA com 99.9 7.5E-22 2.5E-26 200.5 9.4 87 106-192 100-187 (437)
24 2i2y_A Fusion protein consists 99.9 2.7E-21 9.4E-26 168.1 11.7 137 43-188 9-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 4.2E-20 1.4E-24 149.5 10.6 80 107-186 18-98 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 1E-19 3.5E-24 159.2 12.0 85 107-191 38-123 (156)
27 2lxi_A RNA-binding protein 10; 99.8 5.9E-20 2E-24 146.3 8.3 83 108-190 1-86 (91)
28 2dnz_A Probable RNA-binding pr 99.8 4.2E-19 1.4E-23 141.8 11.9 86 107-192 4-90 (95)
29 4fxv_A ELAV-like protein 1; RN 99.8 2.5E-19 8.4E-24 144.9 10.5 80 3-82 17-98 (99)
30 2cqd_A RNA-binding region cont 99.8 9.4E-19 3.2E-23 145.3 14.2 87 105-191 14-100 (116)
31 2dgs_A DAZ-associated protein 99.8 7.1E-19 2.4E-23 141.7 12.3 86 106-192 8-94 (99)
32 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-18 4E-23 149.3 14.2 88 105-192 39-127 (139)
33 2cq0_A Eukaryotic translation 99.8 8.6E-19 3E-23 142.3 12.3 86 106-191 13-99 (103)
34 2cpz_A CUG triplet repeat RNA- 99.8 9.2E-19 3.1E-23 145.1 12.7 87 106-192 23-110 (115)
35 1x5t_A Splicing factor 3B subu 99.8 6.1E-19 2.1E-23 141.1 11.1 86 107-192 4-91 (96)
36 1x5s_A Cold-inducible RNA-bind 99.8 5.5E-19 1.9E-23 143.1 10.9 87 106-192 10-97 (102)
37 3s8s_A Histone-lysine N-methyl 99.8 5.2E-19 1.8E-23 145.8 10.9 82 107-188 5-87 (110)
38 1x5u_A Splicing factor 3B subu 99.8 8.8E-19 3E-23 142.7 12.1 86 106-191 13-99 (105)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.5E-19 2.6E-23 142.3 11.4 87 106-192 10-97 (102)
40 2lxi_A RNA-binding protein 10; 99.8 6.4E-20 2.2E-24 146.0 4.9 83 5-87 1-87 (91)
41 2dnm_A SRP46 splicing factor; 99.8 6.8E-19 2.3E-23 142.9 10.4 86 106-191 11-97 (103)
42 1whw_A Hypothetical protein ri 99.8 1.9E-18 6.4E-23 139.2 12.5 86 106-191 6-92 (99)
43 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-18 5.8E-23 140.9 12.4 84 106-191 13-98 (104)
44 2do4_A Squamous cell carcinoma 99.8 2E-18 7E-23 139.3 12.6 84 106-190 15-99 (100)
45 2lea_A Serine/arginine-rich sp 99.8 1.9E-19 6.6E-24 153.9 6.8 86 106-191 45-131 (135)
46 3s8s_A Histone-lysine N-methyl 99.8 9.4E-19 3.2E-23 144.3 10.7 85 2-86 3-89 (110)
47 2cph_A RNA binding motif prote 99.8 2E-18 6.9E-23 140.9 12.4 86 106-191 13-101 (107)
48 2dng_A Eukaryotic translation 99.8 3E-18 1E-22 139.1 13.0 84 106-191 13-97 (103)
49 1x4b_A Heterogeneous nuclear r 99.8 1.5E-18 5.3E-23 144.0 11.4 87 106-192 25-111 (116)
50 1x4h_A RNA-binding protein 28; 99.8 3.5E-18 1.2E-22 140.4 13.4 86 106-191 13-105 (111)
51 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-18 5.5E-23 141.4 11.2 86 106-191 11-100 (106)
52 2dh8_A DAZ-associated protein 99.8 1.4E-18 4.7E-23 141.6 10.7 88 105-192 13-100 (105)
53 2lkz_A RNA-binding protein 5; 99.8 6.5E-19 2.2E-23 141.4 8.6 80 107-186 8-94 (95)
54 2dgo_A Cytotoxic granule-assoc 99.8 3.1E-18 1.1E-22 141.8 12.8 86 106-191 13-99 (115)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-18 4.9E-23 136.3 10.2 82 107-188 5-87 (87)
56 2cpe_A RNA-binding protein EWS 99.8 2.6E-18 8.8E-23 141.9 12.2 86 106-191 13-107 (113)
57 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-18 3.9E-23 154.1 10.7 86 106-191 70-156 (165)
58 2d9p_A Polyadenylate-binding p 99.8 3E-18 1E-22 139.1 12.2 85 106-192 13-98 (103)
59 2cpf_A RNA binding motif prote 99.8 1.7E-18 5.7E-23 139.2 10.6 86 107-192 4-93 (98)
60 3md1_A Nuclear and cytoplasmic 99.8 2.2E-18 7.6E-23 134.0 10.9 81 108-188 1-82 (83)
61 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.3E-23 140.8 10.0 84 3-86 13-96 (103)
62 2cqg_A TDP-43, TAR DNA-binding 99.8 5.8E-18 2E-22 137.4 13.4 86 106-192 13-98 (103)
63 2cqc_A Arginine/serine-rich sp 99.8 4E-18 1.4E-22 136.0 12.0 82 105-186 12-94 (95)
64 2dgs_A DAZ-associated protein 99.8 2.3E-18 7.7E-23 138.8 10.6 84 3-86 8-92 (99)
65 2cq3_A RNA-binding protein 9; 99.8 9.2E-18 3.2E-22 136.2 13.8 85 106-192 13-98 (103)
66 1x4a_A Splicing factor, argini 99.8 7.9E-18 2.7E-22 138.1 13.2 84 106-192 20-104 (109)
67 2fy1_A RNA-binding motif prote 99.8 4.9E-18 1.7E-22 141.3 12.1 85 106-191 5-90 (116)
68 3ex7_B RNA-binding protein 8A; 99.8 1.8E-18 6.3E-23 145.6 9.6 87 106-192 20-107 (126)
69 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-18 7.4E-23 139.6 9.6 85 1-85 8-94 (102)
70 3p5t_L Cleavage and polyadenyl 99.8 8.6E-19 3E-23 138.9 7.0 82 109-190 2-86 (90)
71 2e5h_A Zinc finger CCHC-type a 99.8 4.8E-18 1.6E-22 135.3 11.4 80 106-185 14-94 (94)
72 3s7r_A Heterogeneous nuclear r 99.8 3E-18 1E-22 134.6 9.8 79 2-80 8-87 (87)
73 3q2s_C Cleavage and polyadenyl 99.8 9.4E-19 3.2E-23 163.0 8.0 81 107-187 67-150 (229)
74 3s7r_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 134.4 10.0 79 106-184 9-87 (87)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 7.4E-18 2.5E-22 137.2 12.4 85 106-191 13-101 (105)
76 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.1E-17 3.8E-22 135.7 13.3 84 106-191 13-97 (103)
77 2rs2_A Musashi-1, RNA-binding 99.8 3.5E-18 1.2E-22 140.5 10.4 85 106-190 23-107 (109)
78 1s79_A Lupus LA protein; RRM, 99.8 4.3E-18 1.5E-22 138.7 10.7 85 2-87 8-93 (103)
79 1wez_A HnRNP H', FTP-3, hetero 99.8 2.3E-18 7.8E-23 140.0 9.0 83 106-190 13-95 (102)
80 2kxn_B Transformer-2 protein h 99.7 3.3E-18 1.1E-22 145.1 10.2 84 106-189 44-128 (129)
81 1whw_A Hypothetical protein ri 99.7 3.4E-18 1.2E-22 137.6 9.7 84 3-86 6-91 (99)
82 1p27_B RNA-binding protein 8A; 99.7 4.4E-18 1.5E-22 138.7 10.4 84 106-189 21-105 (106)
83 2lkz_A RNA-binding protein 5; 99.7 1.3E-18 4.3E-23 139.7 6.8 81 2-82 6-94 (95)
84 2cqp_A RNA-binding protein 12; 99.7 5.1E-18 1.7E-22 136.4 10.5 83 106-188 13-96 (98)
85 2x1f_A MRNA 3'-END-processing 99.7 5.1E-18 1.7E-22 136.0 10.4 82 108-189 2-84 (96)
86 2fc8_A NCL protein; structure 99.7 8.4E-18 2.9E-22 136.1 11.8 83 106-191 13-96 (102)
87 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.3E-18 1.5E-22 133.0 9.7 79 107-185 6-85 (85)
88 2dgo_A Cytotoxic granule-assoc 99.7 7.6E-18 2.6E-22 139.5 11.7 85 3-87 13-99 (115)
89 2dnz_A Probable RNA-binding pr 99.7 5.4E-18 1.8E-22 135.3 10.4 83 3-85 3-87 (95)
90 2dhg_A TRNA selenocysteine ass 99.7 6E-18 2.1E-22 137.4 10.8 85 106-191 7-94 (104)
91 4f25_A Polyadenylate-binding p 99.7 4.8E-18 1.6E-22 141.1 10.3 82 107-190 4-86 (115)
92 1oo0_B CG8781-PA, drosophila Y 99.7 5.8E-18 2E-22 139.1 10.7 85 106-190 24-109 (110)
93 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.3E-18 1.8E-22 133.0 10.0 81 3-83 4-86 (87)
94 2dh8_A DAZ-associated protein 99.7 2.4E-18 8E-23 140.2 8.2 84 3-86 14-98 (105)
95 2div_A TRNA selenocysteine ass 99.7 4.5E-18 1.5E-22 136.9 9.5 84 106-189 7-96 (99)
96 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.1E-18 1.7E-22 132.5 9.3 81 1-81 3-85 (85)
97 2cpz_A CUG triplet repeat RNA- 99.7 4.5E-18 1.5E-22 140.9 9.4 83 3-85 23-107 (115)
98 2cpi_A CCR4-NOT transcription 99.7 8.8E-18 3E-22 138.5 10.9 86 106-191 13-105 (111)
99 1x5u_A Splicing factor 3B subu 99.7 5.8E-18 2E-22 137.8 9.6 83 3-85 13-97 (105)
100 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.1E-18 7.2E-23 139.6 6.9 85 1-85 8-94 (102)
101 3ucg_A Polyadenylate-binding p 99.7 2.4E-18 8.1E-23 135.6 7.0 82 1-82 2-84 (89)
102 3ucg_A Polyadenylate-binding p 99.7 8.4E-18 2.9E-22 132.5 10.1 81 107-188 5-86 (89)
103 2dgw_A Probable RNA-binding pr 99.7 1.3E-17 4.4E-22 132.2 11.2 82 106-190 8-90 (91)
104 2jrs_A RNA-binding protein 39; 99.7 1.3E-17 4.3E-22 137.0 11.5 83 106-188 24-107 (108)
105 3p5t_L Cleavage and polyadenyl 99.7 3.3E-18 1.1E-22 135.5 7.7 81 6-86 2-86 (90)
106 2hgn_A Heterogeneous nuclear r 99.7 7.5E-19 2.6E-23 150.8 4.2 81 107-190 45-126 (139)
107 2cq0_A Eukaryotic translation 99.7 4.4E-18 1.5E-22 138.1 8.5 83 3-85 13-97 (103)
108 3ns6_A Eukaryotic translation 99.7 3.3E-18 1.1E-22 138.4 7.7 84 3-86 4-96 (100)
109 2cqd_A RNA-binding region cont 99.7 1.3E-17 4.4E-22 138.3 11.4 84 2-85 14-98 (116)
110 3lqv_A PRE-mRNA branch site pr 99.7 7.2E-18 2.5E-22 139.6 9.7 102 3-134 6-109 (115)
111 4a8x_A RNA-binding protein wit 99.7 6.3E-18 2.2E-22 132.8 8.9 83 107-189 3-87 (88)
112 2cpy_A RNA-binding protein 12; 99.7 4E-18 1.4E-22 141.3 7.9 86 2-88 12-99 (114)
113 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-17 4.9E-22 133.5 10.9 82 106-190 7-93 (96)
114 1x4h_A RNA-binding protein 28; 99.7 6.5E-18 2.2E-22 138.8 9.1 84 3-86 13-104 (111)
115 2khc_A Testis-specific RNP-typ 99.7 1.3E-17 4.5E-22 138.7 11.0 81 105-185 37-118 (118)
116 2hvz_A Splicing factor, argini 99.7 7.4E-18 2.5E-22 136.3 9.2 99 6-118 1-101 (101)
117 2dnm_A SRP46 splicing factor; 99.7 5.1E-18 1.8E-22 137.7 8.3 82 3-84 11-94 (103)
118 1x4c_A Splicing factor, argini 99.7 2.6E-17 8.8E-22 135.0 12.4 79 106-191 13-97 (108)
119 3md1_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 130.3 9.4 80 5-84 1-82 (83)
120 1x5t_A Splicing factor 3B subu 99.7 5.4E-18 1.8E-22 135.6 8.1 84 2-85 2-88 (96)
121 2rs2_A Musashi-1, RNA-binding 99.7 4.3E-18 1.5E-22 140.0 7.7 84 2-85 22-106 (109)
122 2m2b_A RNA-binding protein 10; 99.7 3.6E-18 1.2E-22 145.1 7.4 84 106-190 21-111 (131)
123 1sjq_A Polypyrimidine tract-bi 99.7 6.6E-18 2.3E-22 137.5 8.6 80 106-191 14-96 (105)
124 2la6_A RNA-binding protein FUS 99.7 1.3E-17 4.5E-22 134.3 10.3 81 105-185 10-99 (99)
125 2fc9_A NCL protein; structure 99.7 3.5E-17 1.2E-21 132.3 12.5 82 106-191 13-95 (101)
126 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4.1E-22 134.8 9.6 81 3-84 15-97 (100)
127 2cpf_A RNA binding motif prote 99.7 7.9E-18 2.7E-22 135.2 8.5 83 3-85 3-90 (98)
128 2ek1_A RNA-binding protein 12; 99.7 7.5E-18 2.6E-22 134.5 8.3 80 107-186 14-94 (95)
129 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-17 5.7E-22 131.7 10.2 84 106-191 6-90 (92)
130 2ywk_A Putative RNA-binding pr 99.7 1.6E-17 5.6E-22 132.5 10.2 80 106-186 14-94 (95)
131 1p27_B RNA-binding protein 8A; 99.7 1.5E-17 5.1E-22 135.6 10.1 82 3-84 21-104 (106)
132 3ns6_A Eukaryotic translation 99.7 2.9E-18 9.9E-23 138.8 5.6 82 107-188 5-94 (100)
133 1p1t_A Cleavage stimulation fa 99.7 8.6E-18 2.9E-22 136.4 8.5 84 106-189 6-90 (104)
134 1wez_A HnRNP H', FTP-3, hetero 99.7 7.4E-18 2.5E-22 137.0 7.9 79 3-83 13-92 (102)
135 1wg5_A Heterogeneous nuclear r 99.7 2.9E-17 9.9E-22 133.8 11.3 84 106-190 13-97 (104)
136 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 3.9E-22 136.2 8.9 84 2-85 10-98 (106)
137 2cq4_A RNA binding motif prote 99.7 8.6E-18 2.9E-22 139.0 8.1 84 105-189 22-106 (114)
138 2fy1_A RNA-binding motif prote 99.7 3.7E-17 1.3E-21 135.9 12.0 83 3-86 5-89 (116)
139 2dgu_A Heterogeneous nuclear r 99.7 5.8E-17 2E-21 131.5 12.9 79 106-192 9-88 (103)
140 1wg5_A Heterogeneous nuclear r 99.7 1.6E-17 5.3E-22 135.4 9.5 81 3-84 13-95 (104)
141 2do0_A HnRNP M, heterogeneous 99.7 3.8E-17 1.3E-21 134.9 11.9 84 106-190 13-97 (114)
142 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5E-22 132.7 9.0 80 3-82 13-94 (95)
143 2dnh_A Bruno-like 5, RNA bindi 99.7 2.7E-17 9.1E-22 133.8 10.6 83 3-86 13-100 (105)
144 3ulh_A THO complex subunit 4; 99.7 2.5E-17 8.7E-22 134.4 10.5 79 106-185 27-106 (107)
145 3n9u_C Cleavage and polyadenyl 99.7 2E-17 6.7E-22 144.9 10.5 82 4-85 54-139 (156)
146 2d9p_A Polyadenylate-binding p 99.7 2E-17 6.8E-22 134.2 9.8 82 3-86 13-96 (103)
147 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4.3E-22 132.9 8.3 79 3-81 14-94 (94)
148 2dng_A Eukaryotic translation 99.7 1.7E-17 5.9E-22 134.6 9.2 82 3-85 13-95 (103)
149 2dhg_A TRNA selenocysteine ass 99.7 3.2E-17 1.1E-21 133.1 10.7 82 3-85 7-92 (104)
150 2cpx_A Hypothetical protein FL 99.7 2E-17 6.8E-22 136.8 9.7 87 106-192 23-110 (115)
151 2div_A TRNA selenocysteine ass 99.7 2.4E-17 8.3E-22 132.6 9.9 81 3-83 7-94 (99)
152 1p1t_A Cleavage stimulation fa 99.7 8.1E-18 2.8E-22 136.6 7.1 86 2-87 5-92 (104)
153 2cph_A RNA binding motif prote 99.7 2E-17 7E-22 134.9 9.5 84 2-85 12-99 (107)
154 2mss_A Protein (musashi1); RNA 99.7 1.2E-17 4E-22 127.4 7.6 74 7-80 1-75 (75)
155 2dnq_A RNA-binding protein 4B; 99.7 4.4E-17 1.5E-21 128.9 11.1 78 106-191 6-84 (90)
156 2x1f_A MRNA 3'-END-processing 99.7 2.1E-17 7.2E-22 132.4 9.3 82 5-86 2-85 (96)
157 2jrs_A RNA-binding protein 39; 99.7 2.4E-17 8.2E-22 135.3 9.8 82 3-84 24-107 (108)
158 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 145.5 9.3 81 107-187 54-137 (156)
159 2cq4_A RNA binding motif prote 99.7 6.7E-18 2.3E-22 139.7 6.5 85 4-88 24-109 (114)
160 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.5E-18 2.6E-22 129.0 6.2 76 109-184 1-76 (77)
161 2cq1_A PTB-like protein L; RRM 99.7 6E-17 2.1E-21 131.3 11.8 80 106-191 13-95 (101)
162 2dnn_A RNA-binding protein 12; 99.7 8.6E-18 2.9E-22 138.3 6.8 83 3-87 14-97 (109)
163 2kt5_A RNA and export factor-b 99.7 7.7E-17 2.6E-21 135.3 12.8 85 105-190 32-117 (124)
164 2jwn_A Embryonic polyadenylate 99.7 3.5E-17 1.2E-21 137.3 10.6 83 107-190 35-118 (124)
165 2dis_A Unnamed protein product 99.7 2.9E-17 1E-21 134.5 9.9 84 3-86 6-95 (109)
166 1x4b_A Heterogeneous nuclear r 99.7 1.5E-17 5.2E-22 138.0 8.2 82 4-85 26-108 (116)
167 2dnn_A RNA-binding protein 12; 99.7 2.5E-17 8.5E-22 135.5 9.4 81 106-188 14-94 (109)
168 2ywk_A Putative RNA-binding pr 99.7 2.8E-17 9.5E-22 131.2 9.4 79 2-81 13-93 (95)
169 1wi8_A EIF-4B, eukaryotic tran 99.7 1.8E-17 6E-22 134.8 8.3 82 3-85 13-96 (104)
170 2cpy_A RNA-binding protein 12; 99.7 1.5E-17 5E-22 137.8 8.0 82 106-188 13-95 (114)
171 2db1_A Heterogeneous nuclear r 99.7 1.7E-17 5.9E-22 138.4 8.2 84 3-87 15-102 (118)
172 1x4d_A Matrin 3; structural ge 99.7 3.8E-17 1.3E-21 132.6 10.0 77 107-189 14-94 (102)
173 2kxn_B Transformer-2 protein h 99.7 2.1E-17 7E-22 140.2 8.8 82 3-84 44-127 (129)
174 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.5E-17 1.2E-21 132.7 9.7 83 2-86 12-96 (103)
175 2cq3_A RNA-binding protein 9; 99.7 4.5E-17 1.5E-21 132.1 10.3 83 2-86 12-96 (103)
176 2dis_A Unnamed protein product 99.7 2.8E-17 9.7E-22 134.6 9.2 83 107-189 7-94 (109)
177 2do0_A HnRNP M, heterogeneous 99.7 6.1E-17 2.1E-21 133.7 11.3 81 3-84 13-95 (114)
178 2cpe_A RNA-binding protein EWS 99.7 2E-17 6.7E-22 136.5 8.2 83 3-85 13-105 (113)
179 1sjq_A Polypyrimidine tract-bi 99.7 2.3E-17 7.9E-22 134.3 8.4 78 3-86 14-95 (105)
180 2la6_A RNA-binding protein FUS 99.7 6E-17 2.1E-21 130.4 10.8 79 3-81 11-99 (99)
181 3r27_A HnRNP L, heterogeneous 99.7 5.6E-17 1.9E-21 130.8 10.4 76 107-188 20-98 (100)
182 1u6f_A Tcubp1, RNA-binding pro 99.7 2.9E-17 1E-21 140.6 9.4 84 3-86 40-125 (139)
183 2dha_A FLJ20171 protein; RRM d 99.7 2.2E-17 7.4E-22 138.8 8.3 84 3-87 21-109 (123)
184 2dgt_A RNA-binding protein 30; 99.7 1.1E-16 3.7E-21 127.2 11.8 79 106-192 8-87 (92)
185 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.4E-17 1.5E-21 142.4 10.4 81 3-83 37-119 (156)
186 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-17 5E-22 127.4 6.5 75 6-80 1-76 (77)
187 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.2E-22 134.2 8.1 80 106-186 9-88 (103)
188 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-17 4.5E-22 127.1 6.1 74 7-80 1-75 (75)
189 2ek1_A RNA-binding protein 12; 99.7 1.5E-17 5E-22 132.8 6.6 79 3-81 13-93 (95)
190 2hgl_A HNRPF protein, heteroge 99.7 2.3E-17 8E-22 141.0 8.2 84 3-87 42-129 (136)
191 2mss_A Protein (musashi1); RNA 99.7 1.8E-17 6.3E-22 126.3 6.8 75 110-184 1-75 (75)
192 2hgm_A HNRPF protein, heteroge 99.7 2.5E-17 8.6E-22 138.8 8.3 81 3-85 40-123 (126)
193 2ad9_A Polypyrimidine tract-bi 99.7 4.5E-17 1.5E-21 135.7 9.7 79 107-191 30-111 (119)
194 3ex7_B RNA-binding protein 8A; 99.7 3.3E-17 1.1E-21 137.8 9.0 84 3-86 20-105 (126)
195 2khc_A Testis-specific RNP-typ 99.7 2.2E-17 7.6E-22 137.3 7.8 79 3-81 38-118 (118)
196 1wex_A Hypothetical protein (r 99.7 7.7E-17 2.6E-21 131.4 10.8 80 106-191 13-95 (104)
197 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-17 4E-22 135.1 5.9 83 107-191 16-99 (101)
198 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4E-22 130.6 5.7 79 107-185 4-83 (85)
199 1why_A Hypothetical protein ri 99.7 8E-17 2.7E-21 129.2 10.7 78 106-189 15-95 (97)
200 2m2b_A RNA-binding protein 10; 99.7 2E-17 6.9E-22 140.4 7.4 82 3-85 21-110 (131)
201 2dgv_A HnRNP M, heterogeneous 99.7 7.7E-17 2.6E-21 127.8 10.3 80 3-84 6-87 (92)
202 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-17 1.1E-21 134.5 8.4 82 3-84 24-107 (110)
203 1x4e_A RNA binding motif, sing 99.7 2E-17 6.8E-22 129.3 6.8 79 3-81 3-83 (85)
204 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5.2E-22 134.4 6.3 81 106-188 17-99 (100)
205 2dgw_A Probable RNA-binding pr 99.7 4.6E-17 1.6E-21 129.0 8.9 79 3-83 8-87 (91)
206 1x5o_A RNA binding motif, sing 99.7 1.3E-16 4.4E-21 131.8 11.8 81 106-187 23-112 (114)
207 2err_A Ataxin-2-binding protei 99.7 5.7E-17 2E-21 133.2 9.5 81 106-188 27-108 (109)
208 1wel_A RNA-binding protein 12; 99.7 1.6E-17 5.5E-22 139.6 6.3 83 3-85 23-106 (124)
209 2cqp_A RNA-binding protein 12; 99.7 2E-17 6.7E-22 132.9 6.6 80 3-82 13-94 (98)
210 1wel_A RNA-binding protein 12; 99.7 2.1E-17 7.2E-22 138.9 7.0 82 106-188 23-105 (124)
211 2lcw_A RNA-binding protein FUS 99.5 1.5E-18 5.3E-23 144.0 0.0 85 107-191 6-99 (116)
212 3ulh_A THO complex subunit 4; 99.7 7.9E-17 2.7E-21 131.5 10.0 78 3-81 27-106 (107)
213 2cpd_A Apobec-1 stimulating pr 99.7 2.6E-16 8.9E-21 126.7 12.9 78 106-191 13-93 (99)
214 2db1_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 135.8 8.6 81 106-188 15-99 (118)
215 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-17 5E-22 126.8 5.1 75 110-184 1-75 (75)
216 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.6E-21 135.2 12.3 80 105-184 60-140 (140)
217 4a8x_A RNA-binding protein wit 99.7 3.8E-17 1.3E-21 128.3 7.3 81 3-83 2-85 (88)
218 1wf1_A RNA-binding protein RAL 99.7 7.3E-17 2.5E-21 132.6 9.3 76 107-190 26-103 (110)
219 2hgl_A HNRPF protein, heteroge 99.7 3.8E-17 1.3E-21 139.7 7.7 81 106-188 42-126 (136)
220 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-17 9.8E-22 132.8 6.5 80 3-83 17-98 (100)
221 3q2s_C Cleavage and polyadenyl 99.7 6.6E-17 2.2E-21 150.5 9.7 81 4-84 67-151 (229)
222 2lmi_A GRSF-1, G-rich sequence 99.7 3.4E-17 1.2E-21 134.0 6.9 84 3-87 9-96 (107)
223 2ki2_A SS-DNA binding protein 99.7 1.4E-17 4.9E-22 131.5 4.4 81 109-190 2-83 (90)
224 2cpj_A Non-POU domain-containi 99.7 1.6E-16 5.6E-21 127.9 10.6 80 106-191 13-93 (99)
225 2dnp_A RNA-binding protein 14; 99.7 1.9E-16 6.6E-21 125.2 10.7 78 106-191 7-85 (90)
226 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-16 7.5E-21 126.7 10.8 79 106-189 17-96 (97)
227 2jwn_A Embryonic polyadenylate 99.7 3.9E-17 1.3E-21 137.0 6.6 80 4-83 35-115 (124)
228 2hgm_A HNRPF protein, heteroge 99.7 2.9E-17 9.9E-22 138.5 5.7 81 106-188 40-122 (126)
229 2ki2_A SS-DNA binding protein 99.7 2.9E-17 1E-21 129.7 5.5 80 6-86 2-83 (90)
230 2xs2_A Deleted in azoospermia- 99.7 2.5E-17 8.7E-22 133.3 5.2 82 3-85 7-88 (102)
231 2dgx_A KIAA0430 protein; RRM d 99.7 7E-17 2.4E-21 129.5 7.5 79 3-84 7-91 (96)
232 1x4a_A Splicing factor, argini 99.7 1.4E-16 4.7E-21 130.6 9.3 79 3-84 20-100 (109)
233 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-16 8.7E-21 129.1 10.8 79 107-191 24-103 (109)
234 2lea_A Serine/arginine-rich sp 99.7 5.2E-17 1.8E-21 138.7 6.7 82 3-84 45-128 (135)
235 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.6E-21 131.9 9.7 78 3-86 29-110 (119)
236 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.4E-21 131.6 8.4 78 107-188 27-106 (111)
237 1fjc_A Nucleolin RBD2, protein 99.7 2.2E-16 7.4E-21 126.3 9.5 80 106-190 14-94 (96)
238 2dha_A FLJ20171 protein; RRM d 99.7 4.8E-17 1.6E-21 136.7 5.7 81 107-188 22-106 (123)
239 2hgn_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 140.4 5.0 80 3-84 44-124 (139)
240 2kt5_A RNA and export factor-b 99.7 1.8E-16 6.2E-21 133.0 9.3 82 3-85 33-116 (124)
241 2cq1_A PTB-like protein L; RRM 99.7 1.8E-16 6.2E-21 128.5 8.9 77 3-85 13-93 (101)
242 1x5o_A RNA binding motif, sing 99.7 2.9E-16 9.8E-21 129.7 10.2 80 2-82 22-111 (114)
243 2lmi_A GRSF-1, G-rich sequence 99.7 4.6E-17 1.6E-21 133.3 5.2 81 106-188 9-93 (107)
244 2wbr_A GW182, gawky, LD47780P; 99.7 1.9E-16 6.5E-21 123.7 8.4 72 108-185 7-79 (89)
245 2hvz_A Splicing factor, argini 99.7 2.2E-16 7.5E-21 127.5 9.1 77 109-190 1-78 (101)
246 2cqh_A IGF-II mRNA-binding pro 99.7 2.6E-16 8.8E-21 125.1 9.2 78 107-191 7-87 (93)
247 2kn4_A Immunoglobulin G-bindin 99.7 2E-16 6.7E-21 138.3 8.9 81 4-84 69-151 (158)
248 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.7E-21 125.5 7.1 79 107-191 4-82 (88)
249 3beg_B Splicing factor, argini 99.7 1.8E-16 6.2E-21 131.5 8.1 78 107-191 15-98 (115)
250 2nlw_A Eukaryotic translation 99.7 2.7E-16 9.3E-21 128.2 9.0 80 107-188 14-101 (105)
251 2xs2_A Deleted in azoospermia- 99.7 1.2E-16 4.2E-21 129.2 6.8 82 106-189 7-88 (102)
252 1x4f_A Matrin 3; structural ge 99.7 3.1E-16 1.1E-20 129.2 9.2 79 106-190 23-105 (112)
253 2cpi_A CCR4-NOT transcription 99.7 9.9E-17 3.4E-21 132.1 6.3 82 3-84 13-102 (111)
254 1wex_A Hypothetical protein (r 99.7 4.9E-16 1.7E-20 126.7 10.2 77 3-85 13-93 (104)
255 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.6E-16 9E-21 134.4 9.0 78 3-80 61-140 (140)
256 2ytc_A PRE-mRNA-splicing facto 99.6 5.4E-16 1.9E-20 121.0 10.0 74 106-185 10-85 (85)
257 2la4_A Nuclear and cytoplasmic 99.6 2.7E-16 9.2E-21 127.0 8.4 75 107-187 26-101 (101)
258 3d2w_A TAR DNA-binding protein 99.6 1.7E-16 5.7E-21 125.6 6.8 78 3-85 9-86 (89)
259 2wbr_A GW182, gawky, LD47780P; 99.6 2.8E-16 9.5E-21 122.8 7.9 74 4-83 6-81 (89)
260 2dnl_A Cytoplasmic polyadenyla 99.6 1.9E-16 6.4E-21 131.1 7.3 78 3-81 6-86 (114)
261 2dnq_A RNA-binding protein 4B; 99.6 5.2E-16 1.8E-20 122.7 9.5 75 3-85 6-82 (90)
262 2jvo_A Nucleolar protein 3; nu 99.6 4.3E-16 1.5E-20 127.8 9.4 77 106-190 29-106 (108)
263 1x4d_A Matrin 3; structural ge 99.6 2.6E-16 8.8E-21 127.7 7.9 77 3-85 13-94 (102)
264 2err_A Ataxin-2-binding protei 99.6 2.3E-16 7.9E-21 129.5 7.6 80 2-83 26-107 (109)
265 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.5E-16 1.5E-20 137.4 9.6 84 3-86 70-155 (165)
266 2fc8_A NCL protein; structure 99.6 3E-16 1E-20 126.8 7.7 80 3-85 13-94 (102)
267 1fj7_A Nucleolin RBD1, protein 99.6 3.7E-17 1.3E-21 132.1 2.1 81 3-84 15-96 (101)
268 1x4c_A Splicing factor, argini 99.6 6.4E-16 2.2E-20 126.6 9.5 75 3-84 13-94 (108)
269 3d2w_A TAR DNA-binding protein 99.6 4.7E-16 1.6E-20 123.0 8.4 78 106-189 9-86 (89)
270 2f3j_A RNA and export factor b 99.6 7.6E-16 2.6E-20 137.6 10.7 83 105-188 85-168 (177)
271 2krb_A Eukaryotic translation 99.6 4.7E-16 1.6E-20 120.5 8.1 71 5-77 1-80 (81)
272 1x5p_A Negative elongation fac 99.6 2.6E-15 8.9E-20 120.4 12.7 78 106-191 13-91 (97)
273 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.4E-20 121.4 10.7 79 107-191 7-86 (94)
274 4f02_A Polyadenylate-binding p 99.6 8.5E-16 2.9E-20 141.0 10.8 82 107-188 14-96 (213)
275 2a3j_A U1 small nuclear ribonu 99.6 7.9E-16 2.7E-20 129.9 9.7 79 107-188 28-111 (127)
276 2kvi_A Nuclear polyadenylated 99.6 3.6E-16 1.2E-20 125.2 7.2 78 106-191 8-87 (96)
277 2fc9_A NCL protein; structure 99.6 3.7E-16 1.3E-20 126.2 7.3 79 2-84 12-92 (101)
278 2lcw_A RNA-binding protein FUS 99.4 2.3E-17 7.8E-22 136.9 0.0 85 2-86 4-98 (116)
279 2e44_A Insulin-like growth fac 99.6 8.1E-16 2.8E-20 122.9 9.0 79 107-189 14-94 (96)
280 2xnq_A Nuclear polyadenylated 99.6 1.5E-15 5.2E-20 122.0 10.4 75 106-188 20-96 (97)
281 1x4f_A Matrin 3; structural ge 99.6 4.9E-16 1.7E-20 128.0 7.6 77 3-85 23-104 (112)
282 1why_A Hypothetical protein ri 99.6 8.4E-16 2.9E-20 123.2 8.8 75 3-83 15-93 (97)
283 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-16 6E-21 124.8 4.7 78 3-85 3-80 (88)
284 2dgu_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 124.9 8.6 78 3-88 9-88 (103)
285 2la4_A Nuclear and cytoplasmic 99.6 7.5E-16 2.6E-20 124.3 8.4 74 3-82 25-100 (101)
286 1l3k_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 136.5 11.2 84 106-189 11-94 (196)
287 2nlw_A Eukaryotic translation 99.6 4.3E-16 1.5E-20 127.0 6.9 78 4-83 14-100 (105)
288 1x4g_A Nucleolysin TIAR; struc 99.6 9.1E-16 3.1E-20 125.7 8.9 77 3-85 23-101 (109)
289 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.6E-20 121.3 9.6 77 3-84 6-83 (94)
290 1nu4_A U1A RNA binding domain; 99.6 4.3E-16 1.5E-20 124.7 6.6 81 106-189 6-91 (97)
291 2cpx_A Hypothetical protein FL 99.6 2.1E-16 7.1E-21 130.7 4.7 82 4-85 24-107 (115)
292 2f3j_A RNA and export factor b 99.6 1.1E-15 3.9E-20 136.4 9.8 82 4-86 87-170 (177)
293 2krb_A Eukaryotic translation 99.6 3.3E-16 1.1E-20 121.3 5.5 72 109-182 2-81 (81)
294 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.9E-20 126.4 9.0 77 107-185 7-86 (114)
295 3r27_A HnRNP L, heterogeneous 99.6 1.3E-15 4.4E-20 122.7 9.0 76 3-84 19-98 (100)
296 2cpj_A Non-POU domain-containi 99.6 8.1E-16 2.8E-20 123.7 7.9 76 3-84 13-90 (99)
297 3lqv_A PRE-mRNA branch site pr 99.6 9.9E-16 3.4E-20 126.6 8.2 79 107-188 7-86 (115)
298 2a3j_A U1 small nuclear ribonu 99.6 1.6E-15 5.3E-20 128.1 9.3 82 4-88 28-115 (127)
299 1sjr_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 131.1 11.1 80 107-190 45-127 (164)
300 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-15 4.8E-20 121.9 8.3 77 3-84 17-95 (97)
301 1fxl_A Paraneoplastic encephal 99.6 2.7E-15 9.3E-20 130.9 10.8 82 108-189 2-84 (167)
302 2ytc_A PRE-mRNA-splicing facto 99.6 2.1E-15 7.4E-20 117.5 8.9 74 2-81 9-85 (85)
303 2dgt_A RNA-binding protein 30; 99.6 1.6E-15 5.4E-20 120.4 8.2 76 2-85 7-84 (92)
304 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.8E-20 119.3 8.1 75 107-188 4-79 (88)
305 1b7f_A Protein (SXL-lethal pro 99.6 2.3E-15 7.9E-20 131.7 9.7 83 107-189 2-85 (168)
306 1whx_A Hypothetical protein ri 99.6 1.5E-15 5.1E-20 125.2 7.8 76 107-188 9-85 (111)
307 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.7E-20 119.7 7.8 74 3-84 7-82 (90)
308 1whx_A Hypothetical protein ri 99.6 1.6E-15 5.4E-20 125.0 7.9 76 2-83 7-84 (111)
309 2jvo_A Nucleolar protein 3; nu 99.6 2.2E-15 7.4E-20 123.6 8.6 75 2-84 28-104 (108)
310 2jvr_A Nucleolar protein 3; RN 99.6 1.1E-15 3.6E-20 126.1 6.7 77 3-83 26-105 (111)
311 2kvi_A Nuclear polyadenylated 99.6 2.7E-15 9.2E-20 120.1 8.1 75 3-85 8-85 (96)
312 2e44_A Insulin-like growth fac 99.6 1.7E-15 5.7E-20 121.1 6.9 76 4-83 14-92 (96)
313 3egn_A RNA-binding protein 40; 99.6 1.2E-15 4.2E-20 131.2 6.2 84 107-190 44-133 (143)
314 2voo_A Lupus LA protein; RNA-b 99.6 2.5E-15 8.6E-20 136.1 8.6 79 107-186 108-186 (193)
315 3zzy_A Polypyrimidine tract-bi 99.6 8.4E-15 2.9E-19 123.6 11.1 79 107-190 27-109 (130)
316 1wf1_A RNA-binding protein RAL 99.6 3E-15 1E-19 122.8 8.0 73 4-84 26-101 (110)
317 1nu4_A U1A RNA binding domain; 99.6 9.8E-16 3.4E-20 122.6 5.0 81 3-86 6-92 (97)
318 2cqh_A IGF-II mRNA-binding pro 99.6 1.4E-15 4.8E-20 120.8 5.6 76 3-85 6-85 (93)
319 2cpd_A Apobec-1 stimulating pr 99.6 5.3E-15 1.8E-19 118.9 9.0 74 3-84 13-90 (99)
320 2e5i_A Heterogeneous nuclear r 99.6 2.2E-14 7.5E-19 120.3 12.8 77 107-189 24-104 (124)
321 2xnq_A Nuclear polyadenylated 99.6 7.5E-15 2.6E-19 117.9 9.4 73 3-83 20-95 (97)
322 3beg_B Splicing factor, argini 99.6 3E-15 1E-19 124.1 7.3 69 3-78 14-84 (115)
323 1wg1_A KIAA1579 protein, homol 99.6 2.5E-15 8.7E-20 118.3 6.4 73 3-82 3-77 (88)
324 2j8a_A Histone-lysine N-methyl 99.6 3.9E-15 1.3E-19 124.1 7.5 77 109-185 3-94 (136)
325 2cq2_A Hypothetical protein LO 99.6 6.3E-15 2.2E-19 121.6 8.6 77 107-189 24-108 (114)
326 1fjc_A Nucleolin RBD2, protein 99.6 1.5E-15 5E-20 121.4 4.7 78 2-84 13-92 (96)
327 2cjk_A Nuclear polyadenylated 99.6 2.9E-15 1E-19 131.1 6.8 80 4-83 86-166 (167)
328 2i2y_A Fusion protein consists 99.6 5.5E-15 1.9E-19 128.1 8.5 76 3-83 71-148 (150)
329 2qfj_A FBP-interacting repress 99.6 1.2E-14 4E-19 132.6 11.1 81 4-84 124-206 (216)
330 3md3_A Nuclear and cytoplasmic 99.6 1.3E-14 4.4E-19 126.4 10.2 79 3-81 85-165 (166)
331 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 126.6 10.4 77 5-85 46-126 (164)
332 2j8a_A Histone-lysine N-methyl 99.6 4.9E-15 1.7E-19 123.5 6.9 76 6-81 3-94 (136)
333 3pgw_S U1-70K; protein-RNA com 99.5 8E-15 2.7E-19 148.8 9.7 82 4-85 101-184 (437)
334 2hzc_A Splicing factor U2AF 65 99.5 7.9E-15 2.7E-19 114.7 7.5 71 3-79 4-86 (87)
335 2voo_A Lupus LA protein; RNA-b 99.5 8.3E-15 2.9E-19 132.7 8.2 80 4-84 108-188 (193)
336 2hzc_A Splicing factor U2AF 65 99.5 1.7E-14 6E-19 112.7 8.9 70 107-183 5-86 (87)
337 2bz2_A Negative elongation fac 99.5 1.7E-14 5.7E-19 120.8 8.8 77 106-190 37-114 (121)
338 2pe8_A Splicing factor 45; RRM 99.5 3.6E-14 1.2E-18 115.8 10.1 80 107-186 7-93 (105)
339 1x5p_A Negative elongation fac 99.5 2.4E-14 8.2E-19 114.7 9.0 74 3-84 13-88 (97)
340 2g4b_A Splicing factor U2AF 65 99.5 2.1E-14 7.1E-19 126.2 9.1 78 4-81 93-172 (172)
341 2yh0_A Splicing factor U2AF 65 99.5 1.7E-14 5.9E-19 129.7 8.6 82 3-84 112-195 (198)
342 3egn_A RNA-binding protein 40; 99.5 2.8E-15 9.7E-20 128.9 3.1 82 3-84 43-131 (143)
343 2diu_A KIAA0430 protein; struc 99.5 3.4E-14 1.2E-18 112.1 8.4 73 107-189 7-86 (96)
344 3nmr_A Cugbp ELAV-like family 99.5 4E-14 1.4E-18 124.5 9.1 83 107-189 2-90 (175)
345 2pe8_A Splicing factor 45; RRM 99.5 1.3E-13 4.4E-18 112.4 11.2 86 2-87 5-98 (105)
346 3tyt_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 128.9 9.4 77 107-188 3-81 (205)
347 3zzy_A Polypyrimidine tract-bi 99.5 7.9E-14 2.7E-18 117.6 9.9 75 6-85 29-108 (130)
348 2cq2_A Hypothetical protein LO 99.5 2.2E-14 7.5E-19 118.3 6.3 74 3-82 23-105 (114)
349 3u1l_A PRE-mRNA-splicing facto 99.5 6.6E-14 2.3E-18 130.3 8.6 76 107-188 133-230 (240)
350 2dit_A HIV TAT specific factor 99.5 3.7E-13 1.3E-17 110.8 12.2 81 106-190 13-105 (112)
351 2e5i_A Heterogeneous nuclear r 99.5 2E-13 6.7E-18 114.5 10.3 73 7-85 27-104 (124)
352 2bz2_A Negative elongation fac 99.5 9.9E-14 3.4E-18 116.0 8.3 74 3-84 37-112 (121)
353 2diu_A KIAA0430 protein; struc 99.5 1.3E-13 4.5E-18 108.7 8.4 73 4-86 7-87 (96)
354 3pgw_A U1-A; protein-RNA compl 99.5 1.8E-13 6.3E-18 130.3 10.8 81 106-189 7-92 (282)
355 2adc_A Polypyrimidine tract-bi 99.4 1.8E-13 6.1E-18 126.9 8.2 77 107-188 33-111 (229)
356 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.2E-17 105.6 11.8 68 118-191 27-94 (100)
357 1fje_B Nucleolin RBD12, protei 99.4 1E-13 3.4E-18 122.4 5.4 82 106-189 11-93 (175)
358 3u1l_A PRE-mRNA-splicing facto 99.4 3.7E-13 1.3E-17 125.3 8.8 79 2-86 131-232 (240)
359 3v4m_A Splicing factor U2AF 65 99.4 3.7E-13 1.3E-17 109.7 7.4 80 107-186 4-96 (105)
360 1qm9_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 121.8 6.4 77 107-188 2-80 (198)
361 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.2E-12 7.4E-17 104.1 10.5 76 4-84 9-91 (100)
362 3sde_A Paraspeckle component 1 99.4 1.9E-12 6.4E-17 122.4 11.0 76 106-187 20-96 (261)
363 2dit_A HIV TAT specific factor 99.4 1.7E-12 6E-17 106.7 9.0 78 3-84 13-103 (112)
364 3ue2_A Poly(U)-binding-splicin 99.3 1.7E-12 5.9E-17 107.9 7.9 80 107-186 19-108 (118)
365 3ue2_A Poly(U)-binding-splicin 99.3 3.6E-12 1.2E-16 106.0 8.7 83 4-86 19-112 (118)
366 1jmt_A Splicing factor U2AF 35 99.3 5.9E-13 2E-17 108.3 3.6 71 113-184 20-103 (104)
367 3v4m_A Splicing factor U2AF 65 99.3 3.8E-12 1.3E-16 103.6 8.2 84 3-86 3-100 (105)
368 1jmt_A Splicing factor U2AF 35 99.2 2.8E-12 9.5E-17 104.3 3.9 69 11-80 21-103 (104)
369 3tht_A Alkylated DNA repair pr 99.2 3.3E-11 1.1E-15 117.9 8.3 74 106-185 16-97 (345)
370 3s6e_A RNA-binding protein 39; 99.2 7.3E-11 2.5E-15 97.4 8.6 75 107-185 6-91 (114)
371 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.7E-15 114.3 9.4 62 3-70 16-81 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 3.4E-10 1.2E-14 93.9 8.8 75 105-185 15-94 (121)
373 3s6e_A RNA-binding protein 39; 99.0 9.9E-10 3.4E-14 90.6 9.7 79 4-86 6-96 (114)
374 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.9E-14 90.7 8.6 72 4-81 17-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 1.3E-09 4.3E-14 85.2 7.4 72 107-187 6-86 (91)
376 2dhx_A Poly (ADP-ribose) polym 98.8 1.9E-08 6.4E-13 79.9 10.2 88 3-121 6-99 (104)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 8.6E-09 3E-13 80.9 6.5 71 107-186 14-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 5.2E-08 1.8E-12 89.4 10.6 67 119-185 140-211 (222)
379 2dnr_A Synaptojanin-1; RRM dom 98.7 3E-08 1E-12 77.4 6.5 72 4-83 6-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.5 2.2E-07 7.6E-12 85.1 9.4 70 17-86 141-216 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 1E-07 3.5E-12 74.7 5.4 70 4-81 14-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.5E-06 5.3E-11 69.5 8.8 71 107-183 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 6.4E-06 2.2E-10 65.3 8.9 75 107-189 7-86 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.2 4.5E-06 1.5E-10 66.8 7.8 73 3-81 19-98 (117)
385 1whv_A Poly(A)-specific ribonu 97.5 0.0003 1E-08 55.1 7.1 53 4-65 15-67 (100)
386 1wey_A Calcipressin 1; structu 97.4 0.00026 8.7E-09 56.4 5.8 74 108-187 5-84 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.00069 2.4E-08 55.3 8.1 75 4-85 23-99 (119)
388 1uw4_A UPF3X; nonsense mediate 97.3 0.00057 2E-08 53.3 7.3 65 6-70 2-70 (91)
389 1whv_A Poly(A)-specific ribonu 97.3 0.00054 1.9E-08 53.7 6.8 56 107-171 15-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.0012 4E-08 51.5 8.3 77 109-185 2-86 (91)
391 1wey_A Calcipressin 1; structu 97.0 0.001 3.5E-08 52.9 6.0 72 4-81 4-82 (104)
392 1wwh_A Nucleoporin 35, nucleop 96.9 0.0032 1.1E-07 51.4 8.2 72 106-184 22-94 (119)
393 3ctr_A Poly(A)-specific ribonu 96.9 0.00087 3E-08 52.7 4.4 51 6-65 7-57 (101)
394 3ctr_A Poly(A)-specific ribonu 96.9 0.001 3.6E-08 52.2 4.6 56 107-171 5-60 (101)
395 2l08_A Regulator of nonsense t 96.8 0.0021 7.3E-08 50.5 6.2 78 107-184 8-93 (97)
396 3p3d_A Nucleoporin 53; structu 96.7 0.0014 4.9E-08 54.3 4.8 87 1-88 3-104 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.5 0.00093 3.2E-08 67.4 2.9 56 4-65 52-107 (464)
398 2l08_A Regulator of nonsense t 96.2 0.0029 9.8E-08 49.7 3.0 62 4-65 8-71 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.8 0.0038 1.3E-07 62.9 3.1 58 108-171 53-110 (464)
400 3p3d_A Nucleoporin 53; structu 95.7 0.013 4.3E-07 48.6 5.0 77 108-185 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 89.2 1 3.6E-05 45.8 8.7 56 107-171 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.8 0.73 2.5E-05 47.0 7.2 52 5-65 440-491 (507)
403 4eyt_A Telomerase associated p 81.9 7.3 0.00025 29.6 7.9 55 4-66 11-65 (129)
404 4eyt_A Telomerase associated p 78.7 11 0.00039 28.6 8.0 72 107-186 11-90 (129)
405 2cu1_A Mitogen-activated prote 68.5 23 0.00077 27.5 7.5 62 115-184 23-87 (103)
406 2ew9_A Copper-transporting ATP 68.1 15 0.00053 29.4 7.3 134 1-171 1-142 (149)
407 3fry_A Probable copper-exporti 62.1 14 0.00046 26.0 5.1 58 107-171 5-62 (73)
408 3lpe_A Putative transcription 60.5 44 0.0015 25.2 8.1 43 18-65 21-68 (92)
409 2g0c_A ATP-dependent RNA helic 56.7 29 0.00098 24.9 6.2 66 7-81 2-75 (76)
410 1vd2_A Protein kinase C, IOTA 54.5 36 0.0012 25.8 6.5 56 111-171 17-75 (89)
411 3lfj_A Manxb, phosphotransfera 52.7 21 0.00071 31.1 5.5 29 47-77 97-125 (187)
412 2hiy_A Hypothetical protein; C 51.5 67 0.0023 27.6 8.7 32 6-38 7-42 (183)
413 3j21_T 50S ribosomal protein L 51.4 28 0.00096 26.3 5.3 55 5-64 24-80 (86)
414 4e8u_A Putative uncharacterize 50.7 37 0.0013 29.1 6.6 58 109-169 13-82 (172)
415 3zzp_A TS9, ribosomal protein 49.5 16 0.00054 27.0 3.6 64 49-134 7-70 (77)
416 1yjr_A Copper-transporting ATP 49.3 58 0.002 21.9 7.5 50 1-56 1-50 (75)
417 3dxs_X Copper-transporting ATP 48.2 44 0.0015 23.0 6.0 59 108-172 3-65 (74)
418 4hhu_A OR280; engineered prote 47.9 31 0.001 27.5 5.2 71 108-183 42-128 (170)
419 4e8u_A Putative uncharacterize 47.6 32 0.0011 29.5 5.7 49 7-58 14-73 (172)
420 2g0c_A ATP-dependent RNA helic 45.9 28 0.00094 25.0 4.5 58 119-185 12-75 (76)
421 2inr_A DNA topoisomerase 4 sub 43.8 31 0.0011 34.8 5.9 59 5-65 275-337 (514)
422 4a4j_A Pacszia, cation-transpo 43.3 63 0.0022 21.7 6.1 58 108-171 3-63 (69)
423 2jrh_A Mitogen-activated prote 42.6 67 0.0023 24.3 6.1 61 115-183 19-82 (94)
424 3bb5_A Stress responsive alpha 41.9 79 0.0027 25.0 7.1 59 109-167 22-91 (121)
425 2c60_A Human mitogen-activated 40.7 51 0.0017 25.6 5.3 60 115-182 46-108 (111)
426 3ilw_A DNA gyrase subunit A; D 40.4 24 0.00082 35.2 4.4 61 4-65 235-299 (470)
427 2npt_B Mitogen-activated prote 38.9 48 0.0016 25.4 4.8 60 115-182 35-97 (100)
428 2qyc_A Ferredoxin-like protein 38.3 86 0.003 23.8 6.6 74 111-185 8-99 (103)
429 2lfv_A Protein DAMX; cell divi 43.7 7 0.00024 30.8 0.0 54 120-175 34-89 (106)
430 2rop_A Copper-transporting ATP 37.3 1.9E+02 0.0064 24.4 12.0 153 6-171 22-184 (202)
431 3fry_A Probable copper-exporti 37.1 58 0.002 22.5 5.1 54 5-65 6-59 (73)
432 1yg0_A COP associated protein; 37.0 84 0.0029 20.3 6.3 56 110-171 4-62 (66)
433 2xmw_A PACS-N, cation-transpor 36.9 89 0.003 20.5 6.0 58 108-171 4-64 (71)
434 4a17_R RPL23A, 60S ribosomal p 36.7 37 0.0013 28.3 4.3 55 5-64 88-144 (150)
435 3bgu_A Ferredoxin-like protein 36.2 80 0.0027 24.8 6.2 58 109-167 23-90 (116)
436 2kpo_A Rossmann 2X2 fold prote 35.1 82 0.0028 23.2 5.4 51 17-80 33-86 (110)
437 3u5e_X 60S ribosomal protein L 34.6 34 0.0012 28.3 3.8 55 5-64 80-136 (142)
438 1osd_A MERP, hypothetical prot 34.4 1E+02 0.0034 20.4 6.9 58 108-171 4-65 (72)
439 3ii6_X DNA ligase 4; XRCC4, NH 33.9 44 0.0015 30.4 4.9 27 5-31 13-39 (263)
440 2kt2_A Mercuric reductase; nme 33.0 1E+02 0.0036 20.2 6.3 56 110-171 3-61 (69)
441 1q4r_A Protein AT3G17210; cent 32.7 1.7E+02 0.0057 22.5 7.6 76 110-185 13-107 (112)
442 2ko1_A CTR148A, GTP pyrophosph 32.1 1.3E+02 0.0044 21.4 6.5 64 7-72 7-71 (88)
443 2ofg_X Zinc-transporting ATPas 31.8 1.5E+02 0.0053 22.3 7.2 58 108-171 9-70 (111)
444 3iz5_X 60S ribosomal protein L 31.4 31 0.0011 28.9 3.0 55 5-64 90-146 (152)
445 1tr0_A Stable protein 1; plant 31.4 1.1E+02 0.0038 23.4 6.2 57 110-166 11-80 (108)
446 3cjk_B Copper-transporting ATP 31.0 1.2E+02 0.0041 20.3 6.2 57 109-171 4-64 (75)
447 2xcs_B DNA gyrase subunit B, D 30.9 32 0.0011 36.1 3.6 61 5-65 457-520 (692)
448 1kvi_A Copper-transporting ATP 30.9 1.3E+02 0.0043 20.5 7.9 59 107-171 8-70 (79)
449 2g9o_A Copper-transporting ATP 30.3 70 0.0024 23.2 4.7 57 108-170 4-64 (90)
450 2i9x_A Putative septation prot 30.1 60 0.002 24.5 4.1 26 31-56 5-30 (87)
451 3ts2_A Protein LIN-28 homolog 29.0 11 0.00038 31.5 -0.1 29 122-158 1-29 (148)
452 3bde_A MLL5499 protein; stress 28.9 1.3E+02 0.0044 23.8 6.3 55 111-165 24-86 (120)
453 3lpe_A Putative transcription 28.5 1E+02 0.0034 23.2 5.3 32 135-171 40-71 (92)
454 1q8l_A Copper-transporting ATP 28.5 1.5E+02 0.0052 20.7 8.1 59 107-171 9-71 (84)
455 1yjr_A Copper-transporting ATP 28.4 1.3E+02 0.0045 19.9 6.8 58 108-171 5-66 (75)
456 3dxs_X Copper-transporting ATP 28.4 1.4E+02 0.0048 20.2 6.5 54 6-65 4-61 (74)
457 3h7h_B Transcription elongatio 28.3 86 0.0029 24.4 5.0 25 149-173 50-74 (106)
458 2l3m_A Copper-ION-binding prot 28.1 1.3E+02 0.0044 19.8 6.3 58 108-171 6-67 (71)
459 1aw0_A Menkes copper-transport 27.4 94 0.0032 20.5 4.8 58 108-171 4-65 (72)
460 1wj6_A KIAA0049 protein, RSGI 27.4 79 0.0027 24.5 4.4 63 116-185 32-94 (101)
461 1y3j_A Copper-transporting ATP 27.3 97 0.0033 21.1 4.9 58 108-171 4-65 (77)
462 3lpx_A GYRA, DNA gyrase, A sub 27.3 66 0.0023 32.2 5.1 61 4-65 225-288 (500)
463 1p6t_A Potential copper-transp 27.1 2.2E+02 0.0077 22.2 13.5 120 7-171 9-136 (151)
464 2kpo_A Rossmann 2X2 fold prote 26.9 71 0.0024 23.5 3.9 49 120-181 33-83 (110)
465 2exu_A Transcription initiatio 26.8 1.6E+02 0.0054 25.7 7.0 30 149-178 148-177 (200)
466 2ia9_A Putative septation prot 26.8 71 0.0024 24.7 4.1 26 31-56 5-30 (100)
467 4a4j_A Pacszia, cation-transpo 26.4 92 0.0031 20.8 4.5 54 6-65 4-60 (69)
468 1i4w_A Mitochondrial replicati 25.9 46 0.0016 31.9 3.6 22 7-28 144-165 (353)
469 4ev1_A Anabena TIC22; TIC22 fo 25.5 3.8E+02 0.013 24.2 10.0 28 154-181 159-186 (252)
470 2i9z_A Putative septation prot 25.5 79 0.0027 24.7 4.2 26 31-56 5-30 (105)
471 3j21_T 50S ribosomal protein L 25.2 1.2E+02 0.0041 22.7 5.1 56 112-170 26-83 (86)
472 3swz_A Steroid 17-alpha-hydrox 25.0 58 0.002 31.8 4.4 50 8-66 17-70 (494)
473 3h7h_B Transcription elongatio 24.3 1.7E+02 0.0058 22.7 6.0 35 31-70 40-74 (106)
474 3uzu_A Ribosomal RNA small sub 24.2 33 0.0011 31.6 2.2 44 6-65 115-158 (279)
475 1vq8_S 50S ribosomal protein L 24.0 1.2E+02 0.0041 22.7 4.9 50 12-64 28-79 (85)
476 2kjw_A TS9, 30S ribosomal prot 24.0 89 0.003 23.9 4.2 62 49-132 7-68 (96)
477 4bby_A Alkyldihydroxyacetoneph 24.0 65 0.0022 33.6 4.6 56 115-171 350-409 (658)
478 1opz_A Potential copper-transp 23.9 1.6E+02 0.0055 19.4 7.6 59 107-171 6-68 (76)
479 3fut_A Dimethyladenosine trans 23.8 58 0.002 29.8 3.8 44 5-65 110-153 (271)
480 1l6j_A Matrix metalloproteinas 23.8 1.2E+02 0.0041 29.8 6.2 23 108-130 101-123 (425)
481 1mwy_A ZNTA; open-faced beta-s 23.8 1.7E+02 0.0057 19.5 7.3 58 108-171 4-63 (73)
482 3bn7_A Ferredoxin-like protein 23.7 1.6E+02 0.0055 23.1 6.0 56 110-165 23-91 (120)
483 1fvq_A Copper-transporting ATP 23.4 1.4E+02 0.0048 19.6 5.1 57 109-171 4-63 (72)
484 2crl_A Copper chaperone for su 23.2 1.3E+02 0.0046 22.3 5.2 53 6-65 21-74 (98)
485 2kyz_A Heavy metal binding pro 23.2 75 0.0026 21.1 3.5 55 110-171 4-58 (67)
486 1xn9_A 30S ribosomal protein S 23.1 2.4E+02 0.0084 21.7 6.6 49 15-64 28-81 (101)
487 1fme_A FSD-EY peptide; beta-BE 23.0 41 0.0014 18.9 1.5 13 17-29 13-25 (28)
488 2crl_A Copper chaperone for su 22.9 2.1E+02 0.0071 21.2 6.3 57 108-171 20-77 (98)
489 2i9x_A Putative septation prot 22.4 79 0.0027 23.8 3.6 26 134-159 5-30 (87)
490 1ywx_A 30S ribosomal protein S 22.4 2.4E+02 0.0082 21.8 6.4 47 15-62 28-79 (102)
491 2xzm_P RPS24E; ribosome, trans 22.3 72 0.0025 26.5 3.6 48 15-63 31-83 (149)
492 3fmb_A Dimeric protein of unkn 22.3 2.5E+02 0.0085 21.9 6.8 58 110-167 23-92 (118)
493 1eak_A 72 kDa type IV collagen 22.2 1.6E+02 0.0054 28.9 6.7 23 108-130 92-114 (421)
494 2v94_A RPS24, 30S ribosomal pr 21.9 1.7E+02 0.0059 22.8 5.6 48 15-63 37-89 (107)
495 1kvi_A Copper-transporting ATP 21.9 1.9E+02 0.0065 19.5 6.8 55 5-65 9-67 (79)
496 1yg0_A COP associated protein; 21.2 1.7E+02 0.0058 18.7 6.2 53 7-65 4-59 (66)
497 1rjj_A Expressed protein; beta 21.1 2.8E+02 0.0095 21.1 7.0 73 113-185 11-100 (111)
498 3mfb_A Uncharacterized protein 21.1 1.1E+02 0.0039 25.6 4.7 37 120-156 3-42 (157)
499 1wf8_A Neurabin-I; PDZ domain, 20.7 1.8E+02 0.0063 21.7 5.7 38 5-42 63-101 (107)
500 2keb_A DNA polymerase subunit 20.5 49 0.0017 25.6 2.0 25 110-134 16-40 (101)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.9e-36 Score=272.13 Aligned_cols=177 Identities=40% Similarity=0.778 Sum_probs=152.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 467899999999999999999999999999999999999999999999999999999999999 6788999999999987
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
.+...... ......++|||.|||+++|+++|+++|++||.|+.|+|+.++.++++++||||+|++++
T Consensus 91 ~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 91 SREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp C------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccccc-------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 65433221 11235689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccCCeEEEEEecCCCCCCCC
Q 015040 162 AVDNVLQKVFHELNGKLVEVKRALPKDASGG 192 (414)
Q Consensus 162 ~a~~Al~~~~~~i~gr~i~V~~a~p~~~~~~ 192 (414)
+|++||+++.+.|+++.|+|+++.++.....
T Consensus 158 ~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 158 SVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHCSCCEETTEECEEEECC-------
T ss_pred HHHHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 9999999866899999999999999887654
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=5.5e-36 Score=264.28 Aligned_cols=166 Identities=45% Similarity=0.906 Sum_probs=155.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechh
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
+++++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||++.+.++++.|.|+++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999988899999999999887
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHH
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDA 162 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~ 162 (414)
+.... +.++|||.|||.++|+++|+++|++||.|++|+|+.++.+++++|||||+|+++++
T Consensus 81 ~~~~~-------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 81 RDEQD-------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp HHHHH-------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred hhhcc-------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 65442 35789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 163 VDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 163 a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
|++||+ ++ ..|.+++|+|++|+||+
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 999998 55 79999999999999874
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4e-35 Score=270.65 Aligned_cols=166 Identities=26% Similarity=0.486 Sum_probs=150.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..+||||+|||+++||++|+++|++||+|++|+|++++.|+++++||||+|.++++|++||+ +.+.+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 6678999999998876
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
........ ..++|||.|||+++|+++|+++|++||.|++|+|++|+. .+++||||+|++++
T Consensus 94 ~~~~~~~~-----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 94 RDPSLRKS-----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQE 154 (213)
T ss_dssp CCTHHHHH-----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHH
T ss_pred cccccccc-----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHH
Confidence 55443321 346899999999999999999999999999999999864 47999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+|++||++|+ ..|++++|+|++++++.
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999988 79999999999998865
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.6e-34 Score=265.46 Aligned_cols=180 Identities=21% Similarity=0.437 Sum_probs=153.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999998 6789999999998866
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
............ .......++|||.|||.++|+++|+++|++||.|++|+|++++.++++++||||+|++++
T Consensus 107 ~~~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPIIDQL--------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHHHHH--------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhhhhh--------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 543221100000 000124589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCCCCCCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALPKDASG 191 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~~ 191 (414)
+|++||++++ ..|.+++|+|++++++....
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999988 69999999999999876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=248.60 Aligned_cols=163 Identities=25% Similarity=0.483 Sum_probs=148.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
|+|||+|||+++||++|+++|++||+|++|+|++++. +++++||||+|.++++|++||+ +.+.+.++.|.|+++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6999999999999999999999999999999999874 6799999999999999999996 778999999999987654
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHH
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAV 163 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a 163 (414)
... ...+.++|||.|||.++|+++|+++|++||.|++|+|+.++.++++++||||+|+++++|
T Consensus 80 ~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 80 QQS-----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CCC-----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CCC-----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 321 112568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC-CccCCeEEEEEecCC
Q 015040 164 DNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 164 ~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
++||++++ ..|.+++|+|++|++
T Consensus 143 ~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 143 QNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHhCCCccCCcEEEEEecCC
Confidence 99999888 799999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-33 Score=248.67 Aligned_cols=162 Identities=24% Similarity=0.450 Sum_probs=150.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.+++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++ +.+.+.+++|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999999999999999999999999999997 7789999999999887
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
+.... .+.++|||.|||.++++++|+++|++||.|+.|+|++++.++++++||||+|++++
T Consensus 82 ~~~~~-------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGES-------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSST-------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccc-------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 54321 24678999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHcC-CccCC--eEEEEEec
Q 015040 162 AVDNVLQKVF-HELNG--KLVEVKRA 184 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~g--r~i~V~~a 184 (414)
+|++|++.++ ..|.+ ++|+|++|
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999998 68877 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.3e-33 Score=245.71 Aligned_cols=162 Identities=25% Similarity=0.517 Sum_probs=148.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.+++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.+.+++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999998 7789999999999887
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
+.... ...++|||.|||.++++++|+++|++||.|++|+|+.++.++++++||||+|++++
T Consensus 81 ~~~~~-------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSAS-------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCGG-------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccc-------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 54322 24578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCeE--EEEEec
Q 015040 162 AVDNVLQKVF-HELNGKL--VEVKRA 184 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~--i~V~~a 184 (414)
+|++|+++++ ..|.++. |+|++|
T Consensus 142 ~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999998 6898864 888875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.2e-32 Score=244.30 Aligned_cols=164 Identities=23% Similarity=0.440 Sum_probs=142.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHH--cCCCCC---Ccee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTG--RPRGFGFVVFSDPSVLDQVLQ--DKHTID---GRPV 75 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg--~~kG~aFV~F~~~e~A~~Al~--~~~~i~---gr~l 75 (414)
+++++|||+|||+++||++|+++|++||+|++|+|++++.++ ++++||||+|.++++|++||+ +...+. .+.|
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 478999999999999999999999999999999999998887 899999999999999999998 443443 4666
Q ss_pred eeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEE
Q 015040 76 EAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFI 155 (414)
Q Consensus 76 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV 155 (414)
.+.++...... ....++|||.|||+++|+++|+++|++||.|++|+|++++. +++++||||
T Consensus 81 ~~~~~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV 141 (175)
T 3nmr_A 81 QMKPADSEKNN------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFV 141 (175)
T ss_dssp EEEECGGGCCS------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEE
T ss_pred EEccccccccc------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEE
Confidence 66655543221 12568899999999999999999999999999999999964 889999999
Q ss_pred EeCCHHHHHHHHHHcC-CccC---CeEEEEEecC
Q 015040 156 TFETEDAVDNVLQKVF-HELN---GKLVEVKRAL 185 (414)
Q Consensus 156 eF~~~e~a~~Al~~~~-~~i~---gr~i~V~~a~ 185 (414)
+|+++++|++||++++ ..+. +++|+|++|.
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 142 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999999 4555 4999999873
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.3e-32 Score=243.21 Aligned_cols=163 Identities=20% Similarity=0.362 Sum_probs=142.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++||++|+++|++|+.|.. .++.+..++++++||||+|.++++|++||+ +.+.|.+++|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 56899999999999999999999999998776 344445678899999999999999999998 6679999999999887
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETED 161 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e 161 (414)
++.... ....++|||.|||.++|+++|+++|++|+.|+.+ ..++++++||||+|++++
T Consensus 90 ~~~~~~-----------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 90 GRDSKK-----------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp CSSCST-----------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHH
T ss_pred Cccccc-----------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHH
Confidence 643211 1357899999999999999999999999988766 566889999999999999
Q ss_pred HHHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 162 AVDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 162 ~a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+|++||+.++ ..|.+++|+|++++||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 9999999988 79999999999999874
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.9e-31 Score=240.37 Aligned_cols=182 Identities=20% Similarity=0.344 Sum_probs=148.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF----G-------DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTI 70 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~----G-------~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i 70 (414)
..+++|||+|||+++||++|+++|++| + .|.++.+. ++++||||+|.++++|++||+ +.+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999 4 55665553 457899999999999999997 66789
Q ss_pred CCceeeeeechhhhhhcccCCCCC-CCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCC
Q 015040 71 DGRPVEAKRALSREEQHNSRSGNF-NSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRP 149 (414)
Q Consensus 71 ~gr~l~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~ 149 (414)
.+++|.|+++.............. ............+.++|||.|||+++++++|+++|++||.|++|+|+++++++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999998876533222111100 0001111222346799999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCCCCC
Q 015040 150 RGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 150 rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
++||||+|+++++|++||+.++ ..|++++|+|++++|+...
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999988 6999999999999987653
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=3.9e-31 Score=234.25 Aligned_cols=158 Identities=24% Similarity=0.471 Sum_probs=141.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF----G-------DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTI 70 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~----G-------~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i 70 (414)
+++++|||+|||+++||++|+++|++| + .|.++.+.++ ++||||+|.++++|++||+ +.+.+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467999999999999999999999999 6 6777776543 6899999999999999997 67889
Q ss_pred CCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCc
Q 015040 71 DGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPR 150 (414)
Q Consensus 71 ~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~r 150 (414)
.+++|.|+++...... ...++|||.|||.++|+++|+++|++||+|+.|+|++++.+++++
T Consensus 76 ~g~~i~v~~~~~~~~~-------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~ 136 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 136 (172)
T ss_dssp TTEECEEECCSSCCCC-------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEE
T ss_pred cCceeeecCCcccCCC-------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcc
Confidence 9999999876532211 136889999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 151 GFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 151 G~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+||||+|+++++|++|+++++ ..|.+++|+|++|.
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 137 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999988 79999999999873
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3e-30 Score=247.61 Aligned_cols=170 Identities=15% Similarity=0.285 Sum_probs=154.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|.+++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999996 778999999999998
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCC-CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTL-TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
.++..... ....++|||.|||+++ |+++|+++|++||.|++|+|+.++ +++++++|||+|++
T Consensus 173 ~~~~~~~~----------------~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTPA----------------LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCTT----------------TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSS
T ss_pred CCCCCCcc----------------cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCC
Confidence 76543211 1256889999999995 999999999999999999999987 68999999999999
Q ss_pred HHHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 160 EDAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 160 ~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
+++|++||+.++ ..|.+++|+|++++|+..
T Consensus 236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999999998 799999999999998764
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.7e-30 Score=246.71 Aligned_cols=175 Identities=15% Similarity=0.301 Sum_probs=142.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLR----DYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~----e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
..+++|||+|||++++|++|+ ++|++||+|++|+|++ ++++|+||||+|.++++|++||+ +...|.++.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 468999999999999999977 8999999999999886 67899999999999999999997 67899999999
Q ss_pred eeechhhhhhcccCCCCCCC------------------------------------------------------------
Q 015040 77 AKRALSREEQHNSRSGNFNS------------------------------------------------------------ 96 (414)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~------------------------------------------------------------ 96 (414)
|+++..+.............
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99886544211000000000
Q ss_pred --------------------------------CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecC
Q 015040 97 --------------------------------GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQ 144 (414)
Q Consensus 97 --------------------------------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 144 (414)
..........+.++|||.|||.++|+++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 000000122356889999999999999999999999999999999654
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHcC-CccC-CeEEEEEecC
Q 015040 145 NTQRPRGFGFITFETEDAVDNVLQKVF-HELN-GKLVEVKRAL 185 (414)
Q Consensus 145 ~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~-gr~i~V~~a~ 185 (414)
++||||+|++.++|++||+.|+ ..|. +++|+|++++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5899999999999999999999 6888 9999999986
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.5e-30 Score=237.49 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=138.5
Q ss_pred CCCEEEEcCCC-CCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIA-WDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp-~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
++++|||+||| +++|+++|+++|++||+|++|+|++++ +|||||+|.++++|++||+ +.+.|.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998753 6899999999999999998 778999999999988
Q ss_pred hhhhhhcccC---CC------CCCC---CCC------CCCCCccccceeEecCCCCCCCHHHHHHHhhccCce--eeeEE
Q 015040 81 LSREEQHNSR---SG------NFNS---GRG------SEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHV--TDVVV 140 (414)
Q Consensus 81 ~~~~~~~~~~---~~------~~~~---~~~------~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I--~~v~i 140 (414)
+.+...+... .. .... .+. .......+.++|||.|||+++||++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6433211000 00 0000 000 000112356789999999999999999999999999 89999
Q ss_pred eecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe----EEEEEec
Q 015040 141 MYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK----LVEVKRA 184 (414)
Q Consensus 141 ~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr----~i~V~~a 184 (414)
+.++ +.+++||||+|+++++|++||+.|+ .+|.++ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 4567999999999999999999999 588775 6777664
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.9e-30 Score=239.14 Aligned_cols=175 Identities=17% Similarity=0.282 Sum_probs=143.2
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
.++++|||+|||+ +++|++|+++|++||+|++|+|++++ ++||||+|.++++|++||+ +...|.+++|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4679999999999 99999999999999999999999875 6899999999999999997 77899999999998
Q ss_pred chhhhhhcccCCCCC----------CCCCC------CCCCCccccceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEee
Q 015040 80 ALSREEQHNSRSGNF----------NSGRG------SEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMY 142 (414)
Q Consensus 80 a~~~~~~~~~~~~~~----------~~~~~------~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~ 142 (414)
+.............. ..... .......+.++|||.|||.++++++|+++|++|| .|+.|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 875432211100000 00000 0011123578999999999999999999999999 999999975
Q ss_pred cCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC-CeEEEEEecCCC
Q 015040 143 DQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN-GKLVEVKRALPK 187 (414)
Q Consensus 143 d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~-gr~i~V~~a~p~ 187 (414)
+ .++||||+|++.++|++||+.++ ..|. +++|+|++++|+
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36899999999999999999988 6888 999999999875
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.3e-30 Score=248.23 Aligned_cols=171 Identities=17% Similarity=0.283 Sum_probs=143.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
+.++|||+|||+++++++|+++|++|| +|++|.|++++. +++++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999875 7889999999999999999999 778999999999998
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCC-CCHHHHHHHhhccCceeeeEEeecCC-CCCCceEEEEEeC
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPT-LTEDGFRQYFENYGHVTDVVVMYDQN-TQRPRGFGFITFE 158 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~rG~aFVeF~ 158 (414)
.+....... .......++|||.|||++ +|+++|+++|++||.|+.|+|+++.. |+++++||||+|.
T Consensus 195 ~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 195 NPLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CCC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 765443221 011235789999999999 99999999999999999999999877 6899999999999
Q ss_pred CHHHHHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 159 TEDAVDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 159 ~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
++++|++|| .++ ..|.+++|+|+++++|+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999999 888 69999999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.6e-30 Score=233.90 Aligned_cols=174 Identities=17% Similarity=0.325 Sum_probs=143.2
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
++++|||+|||+ +++|++|+++|++||+|++|+|++++ ++||||+|.++++|++||+ +...|.+++|.|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 579999999999 99999999999999999999999875 6899999999999999998 778999999999988
Q ss_pred hhhhhhcccCCCC---------------CCC-CCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeec
Q 015040 81 LSREEQHNSRSGN---------------FNS-GRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYD 143 (414)
Q Consensus 81 ~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d 143 (414)
............. ... ..........+.++|||.|||.++++++|+++|++|| .|++|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7543221110000 000 0000111224578999999999999999999999999 9999999764
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC-CeEEEEEecCCC
Q 015040 144 QNTQRPRGFGFITFETEDAVDNVLQKVF-HELN-GKLVEVKRALPK 187 (414)
Q Consensus 144 ~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~-gr~i~V~~a~p~ 187 (414)
.+++|||+|+++++|++||+.++ ..|. +++|+|++++|+
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 27899999999999999999998 6888 999999999875
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=5.1e-29 Score=239.96 Aligned_cols=160 Identities=11% Similarity=0.231 Sum_probs=137.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++||+ +...|.+++|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998754 57999999999999999998 667899999999864
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
..++|||.|||+++++++|+++|++|| .|+.|+|+.++. +++++||||+|.+
T Consensus 116 --------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~ 168 (292)
T 2ghp_A 116 --------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTS 168 (292)
T ss_dssp --------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSS
T ss_pred --------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECC
Confidence 257899999999999999999999999 999999999876 7789999999999
Q ss_pred HHHHHHHHHHcC-CccCCeEEEEEecCCCCCC
Q 015040 160 EDAVDNVLQKVF-HELNGKLVEVKRALPKDAS 190 (414)
Q Consensus 160 ~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~~ 190 (414)
+++|++||+.++ ..|.+++|.|+++.|+...
T Consensus 169 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 169 KEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999999888 7999999999999877543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.4e-28 Score=235.90 Aligned_cols=155 Identities=17% Similarity=0.397 Sum_probs=141.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.++++|||+|||+++||++|+++|++|| |++|++ .++++||||+|.++++|++||+ +...|.+++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3579999999999999999999999999 999988 3456899999999999999997 677899999999863
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
. ...+|||.|||+++|+++|+++|++||.|+.|+|+.++.++++++||||+|.++
T Consensus 93 ~-------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 93 P-------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp C-------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred C-------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH
Confidence 2 346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 161 DAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 161 e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
++|++|++.++ ..|.+++|+|+++.++..
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999998888 799999999999987654
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.2e-28 Score=234.32 Aligned_cols=155 Identities=28% Similarity=0.485 Sum_probs=140.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ++||||+|.++++|++||+ +.+.|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35689999999999999999999999999999999754 5799999999999999998 778999999999987
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCH
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETE 160 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~ 160 (414)
. +..+|||.|||..+|+++|+++|++||.|++|+|+.| .++++++||||+|.+.
T Consensus 94 ~-------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 94 T-------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAK 147 (261)
T ss_dssp C-------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSH
T ss_pred c-------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCH
Confidence 5 2468999999999999999999999999999999999 5799999999999999
Q ss_pred HHHHHHHHHcC-C-ccC---CeEEEEEecCCCCC
Q 015040 161 DAVDNVLQKVF-H-ELN---GKLVEVKRALPKDA 189 (414)
Q Consensus 161 e~a~~Al~~~~-~-~i~---gr~i~V~~a~p~~~ 189 (414)
++|++||+.++ . .+. +++|.|+++.+...
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99999999985 3 333 89999999887643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.7e-23 Score=183.42 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=112.9
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc--C-CCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccce
Q 015040 34 QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD--K-HTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKK 110 (414)
Q Consensus 34 ~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~--~-~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (414)
+++|+.+.. +++||+||+|.++++|++||+. . ..+++. +.+............. ............++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 72 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGE-WTYDDATKTFTVTEGS------HHHHHHMDVEGMTS 72 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCE-EEEETTTTEEEEECCC------CCSSCCCCCCBCCE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCc-ccccCccccccccccc------cccccccCCCCCCE
Confidence 567777654 6899999999999999999972 1 233332 2222211111111000 00111122246789
Q ss_pred eEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCCCC
Q 015040 111 IFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPKDA 189 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~~ 189 (414)
|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.|+ +.|.+++|+|++++++..
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 699999999999988755
Q ss_pred CC
Q 015040 190 SG 191 (414)
Q Consensus 190 ~~ 191 (414)
..
T Consensus 153 ~~ 154 (158)
T 2kn4_A 153 PD 154 (158)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1e-21 Score=163.38 Aligned_cols=108 Identities=20% Similarity=0.407 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.+.+|||+|||+++||++|+++|++||+|++|+|++++. .+|+||||+|+++++|++||+ +.+.|++++|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 467899999999999999999999999999999999864 589999999999999999997 7789999999999987
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHH
Q 015040 82 SREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDG 124 (414)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~ 124 (414)
++.+....... ......+|||.|||+++|++.
T Consensus 82 ~~~~~~~~~~~-----------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGA-----------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC---------------------------------------
T ss_pred Ccccccccccc-----------ccCCCCceEeCCCCCCccccc
Confidence 65433221111 112356799999999999874
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=7.5e-22 Score=200.53 Aligned_cols=87 Identities=25% Similarity=0.477 Sum_probs=81.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+.||+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||++|+ +.|.+++|+|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++....+
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 98776544
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.7e-21 Score=168.13 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=111.4
Q ss_pred CCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCC
Q 015040 43 TGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPT 119 (414)
Q Consensus 43 tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~ 119 (414)
..+.+|+++|+|.++++|++||+ +...+++ +|.++++..+......... ...........+.++|||+|||++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH---HHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---CCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---ccccccccCCCCCCEEEEeCCCCC
Confidence 35789999999999999999997 4568999 9999887654433221111 111112223346789999999999
Q ss_pred CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCCC
Q 015040 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPKD 188 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~~ 188 (414)
+|+++|+++|++||.|++|+|+++ +++||||+|+++++|++||+.++ ..|.+++|+|++++++.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999976 58999999999999999999888 69999999999998874
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=149.48 Aligned_cols=80 Identities=24% Similarity=0.483 Sum_probs=77.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|.+++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999988 79999999999998
Q ss_pred C
Q 015040 186 P 186 (414)
Q Consensus 186 p 186 (414)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1e-19 Score=159.16 Aligned_cols=85 Identities=16% Similarity=0.366 Sum_probs=80.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++|+++|+++|++||+|++|+|+++++++++++||||+|+++++|++||+.|+ +.|.+++|+|++++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999988 79999999999998
Q ss_pred CCCCCC
Q 015040 186 PKDASG 191 (414)
Q Consensus 186 p~~~~~ 191 (414)
++....
T Consensus 118 ~~~~~~ 123 (156)
T 1h2v_Z 118 GFKEGR 123 (156)
T ss_dssp CCCTTC
T ss_pred CCCCcC
Confidence 876543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-20 Score=146.25 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=77.4
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC--CccCCeEEEEEec
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF--HELNGKLVEVKRA 184 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~--~~i~gr~i~V~~a 184 (414)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999875 3799999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987653
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=141.81 Aligned_cols=86 Identities=31% Similarity=0.614 Sum_probs=80.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||.++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|++++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999999999999999999999999999999999888 79999999999999
Q ss_pred CCCCCCC
Q 015040 186 PKDASGG 192 (414)
Q Consensus 186 p~~~~~~ 192 (414)
++.....
T Consensus 84 ~~~~~~~ 90 (95)
T 2dnz_A 84 ERLDGGS 90 (95)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=144.95 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.|++++|||||+|.++++|++||+ +...|++++|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hh
Q 015040 81 LS 82 (414)
Q Consensus 81 ~~ 82 (414)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-19 Score=145.28 Aligned_cols=87 Identities=31% Similarity=0.565 Sum_probs=81.1
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
..+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++..|.+++|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 34679999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 94 ~~~~~~~ 100 (116)
T 2cqd_A 94 YLGAKPR 100 (116)
T ss_dssp TTTCCCC
T ss_pred ccCCCcc
Confidence 8765443
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=141.75 Aligned_cols=86 Identities=52% Similarity=0.951 Sum_probs=80.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+ ++ +.|.+++|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999 56 7999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876553
No 32
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=149.29 Aligned_cols=88 Identities=25% Similarity=0.475 Sum_probs=82.1
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
....++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||++++ ..|.+++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999988 699999999999
Q ss_pred cCCCCCCCC
Q 015040 184 ALPKDASGG 192 (414)
Q Consensus 184 a~p~~~~~~ 192 (414)
++++..+..
T Consensus 119 a~~~~~~~~ 127 (139)
T 1u6f_A 119 AASGHQRPG 127 (139)
T ss_dssp SSCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876643
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-19 Score=142.30 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=81.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 467999999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 93 ~~~~~~~ 99 (103)
T 2cq0_A 93 KPSTNSG 99 (103)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 9887654
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=9.2e-19 Score=145.12 Aligned_cols=87 Identities=21% Similarity=0.398 Sum_probs=81.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||.|++|+|+++++++++++||||+|+++++|++||+.|+ ..|.+++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpz_A 103 RSKNDSKS 110 (115)
T ss_dssp CCSCCCCC
T ss_pred CCCCcCCC
Confidence 98876543
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=141.14 Aligned_cols=86 Identities=28% Similarity=0.526 Sum_probs=80.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeee-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDV-VVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+.++|||.|||+++++++|+++|++||.|++| +|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 999999999999999999999999999999888 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 84 ~~~~~~~~ 91 (96)
T 1x5t_A 84 FKKDSKGS 91 (96)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=143.14 Aligned_cols=87 Identities=34% Similarity=0.634 Sum_probs=81.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 90 ~~~~~~~~ 97 (102)
T 1x5s_A 90 GKSSDNRS 97 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=145.84 Aligned_cols=82 Identities=13% Similarity=0.333 Sum_probs=78.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.|+ ..|.+++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999998 69999999999987
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
.+.
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 543
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=142.67 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=81.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.|+ +.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 9887654
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=142.33 Aligned_cols=87 Identities=25% Similarity=0.510 Sum_probs=81.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 367899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876654
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-20 Score=146.05 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc---CCCCCCceeeeeec
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD---KHTIDGRPVEAKRA 80 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~i~gr~l~v~~a 80 (414)
+++|||+|||+++||++|+++|++|| +|++|+|++++.|+++||||||+|.++++|++||+. ...|++++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999999999999999999999999999999983 23689999999999
Q ss_pred hhhhhhc
Q 015040 81 LSREEQH 87 (414)
Q Consensus 81 ~~~~~~~ 87 (414)
.+++...
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8765443
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=142.91 Aligned_cols=86 Identities=27% Similarity=0.396 Sum_probs=80.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 467999999999999999999999999999999999999999999999999999999999999888 7999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dnm_A 91 RYGRRDL 97 (103)
T ss_dssp SSCCSCC
T ss_pred CcCCCCC
Confidence 8876544
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=139.20 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=80.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 367899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9887643
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=140.86 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=78.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNT-QRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
.+.++|||.|||+++|+++|+++|++|| |++|+|+.++.+ +++++||||+|+++++|++|| .++ ..|.+++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999999988 999999999999999999999 777 799999999999
Q ss_pred cCCCCCCC
Q 015040 184 ALPKDASG 191 (414)
Q Consensus 184 a~p~~~~~ 191 (414)
++++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=139.29 Aligned_cols=84 Identities=19% Similarity=0.463 Sum_probs=79.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 89999999999999999999999988 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+|+..+
T Consensus 94 ~~~~~~ 99 (100)
T 2do4_A 94 NSGPSS 99 (100)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987654
No 45
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.9e-19 Score=153.92 Aligned_cols=86 Identities=26% Similarity=0.418 Sum_probs=80.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 125 ~~~~~~~ 131 (135)
T 2lea_A 125 RYGRPPD 131 (135)
T ss_dssp CCCCCCT
T ss_pred CCCCCCc
Confidence 8876554
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=144.31 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+...++|||+|||++++|++|+++|++||+|++|+|++++.|+++||||||+|+++++|++||+ +.+.|++++|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999998 77899999999999
Q ss_pred chhhhhh
Q 015040 80 ALSREEQ 86 (414)
Q Consensus 80 a~~~~~~ 86 (414)
+......
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 8765443
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=140.93 Aligned_cols=86 Identities=23% Similarity=0.400 Sum_probs=80.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeec-CCCCCCceEEEEEeCCHHHHHHHHHHc-C-CccCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYD-QNTQRPRGFGFITFETEDAVDNVLQKV-F-HELNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~rG~aFVeF~~~e~a~~Al~~~-~-~~i~gr~i~V~ 182 (414)
.+.++|||.|||+++|+++|+++|++||+|+.|+|+++ +.++++++||||+|+++++|++||+.+ + +.|.+++|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46789999999999999999999999999999999999 889999999999999999999999998 6 79999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 93 ~a~~~~~~~ 101 (107)
T 2cph_A 93 WADSEVTVQ 101 (107)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999877654
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3e-18 Score=139.11 Aligned_cols=84 Identities=19% Similarity=0.351 Sum_probs=78.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++|+ |++|+|++++.++++++||||+|+++++|++|| +++ ..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4678999999999999999999999996 999999999999999999999999999999999 777 7999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876654
No 49
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=143.96 Aligned_cols=87 Identities=41% Similarity=0.785 Sum_probs=81.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|||.|||+++|+++|+++|++||.|++|+|+.++.++++++||||+|+++++|++||+...+.|++++|+|++++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999994479999999999999
Q ss_pred CCCCCCC
Q 015040 186 PKDASGG 192 (414)
Q Consensus 186 p~~~~~~ 192 (414)
++.....
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 9876553
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=140.42 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=80.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-------CccCCeE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-------HELNGKL 178 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-------~~i~gr~ 178 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 467899999999999999999999999999999999999999999999999999999999999986 4899999
Q ss_pred EEEEecCCCCCCC
Q 015040 179 VEVKRALPKDASG 191 (414)
Q Consensus 179 i~V~~a~p~~~~~ 191 (414)
|+|++++++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999887654
No 51
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.6e-18 Score=141.36 Aligned_cols=86 Identities=22% Similarity=0.467 Sum_probs=80.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc---CCeEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL---NGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i---~gr~i~V 181 (414)
.+.++|||.|||.++|+++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.++ ..+ .+++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999988 466 8899999
Q ss_pred EecCCCCCCC
Q 015040 182 KRALPKDASG 191 (414)
Q Consensus 182 ~~a~p~~~~~ 191 (414)
++++++....
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9999877654
No 52
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=141.62 Aligned_cols=88 Identities=36% Similarity=0.668 Sum_probs=81.3
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
..+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+...+.|++++|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 34679999999999999999999999999999999999999999999999999999999999999337999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++...+.
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876553
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=6.5e-19 Score=141.36 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=74.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCc--eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC-----ccCCeEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGH--VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH-----ELNGKLV 179 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~-----~i~gr~i 179 (414)
...+|||+|||+++|+++|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+.++. .|++|+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4678999999999999999999999995 67999999999999999999999999999999999873 4899999
Q ss_pred EEEecCC
Q 015040 180 EVKRALP 186 (414)
Q Consensus 180 ~V~~a~p 186 (414)
.|++|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=3.1e-18 Score=141.84 Aligned_cols=86 Identities=26% Similarity=0.502 Sum_probs=81.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.|+ +.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 9877654
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=136.32 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=75.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||.++++++|+++|++||.|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999988 79999999999998
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 863
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=141.87 Aligned_cols=86 Identities=21% Similarity=0.381 Sum_probs=80.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCcee--------eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVT--------DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
.+.++|||.|||+++|+++|+++|++||.|+ .|+|+.++.++++++||||+|+++++|++||+.|+ +.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 79999999999999999999999999999999988 79999
Q ss_pred eEEEEEecCCCCCCC
Q 015040 177 KLVEVKRALPKDASG 191 (414)
Q Consensus 177 r~i~V~~a~p~~~~~ 191 (414)
++|+|++++++....
T Consensus 93 ~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 93 SKLKVSLARKKPPMN 107 (113)
T ss_dssp EECEEECSSCCCCST
T ss_pred CEEEEEECCCCCCCC
Confidence 999999999887654
No 57
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.1e-18 Score=154.12 Aligned_cols=86 Identities=19% Similarity=0.370 Sum_probs=78.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+.|+ ..|.+++|+|+++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8876543
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=139.10 Aligned_cols=85 Identities=21% Similarity=0.457 Sum_probs=79.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.+ ++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999998 78899999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98876553
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=139.20 Aligned_cols=86 Identities=19% Similarity=0.415 Sum_probs=79.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCC---CCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQN---TQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
+.++|||.|||+++|+++|+++|++||+|++|+|+.++. |+++++||||+|+++++|++||+.|+ +.|.+++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 578999999999999999999999999999999999887 66899999999999999999999988 79999999999
Q ss_pred ecCCCCCCCC
Q 015040 183 RALPKDASGG 192 (414)
Q Consensus 183 ~a~p~~~~~~ 192 (414)
+++++.....
T Consensus 84 ~a~~~~~~~~ 93 (98)
T 2cpf_A 84 ISERATKPAS 93 (98)
T ss_dssp CSSCSSCCCC
T ss_pred EccCCCCCCC
Confidence 9988776543
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.2e-18 Score=133.96 Aligned_cols=81 Identities=27% Similarity=0.571 Sum_probs=77.4
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
+.+|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++|++.++ ..|.+++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999988 799999999999998
Q ss_pred CC
Q 015040 187 KD 188 (414)
Q Consensus 187 ~~ 188 (414)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=140.78 Aligned_cols=84 Identities=37% Similarity=0.700 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechh
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||++.+.|+++.|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999988899999999999987
Q ss_pred hhhh
Q 015040 83 REEQ 86 (414)
Q Consensus 83 ~~~~ 86 (414)
+.+.
T Consensus 93 ~~~~ 96 (103)
T 2cqg_A 93 KQSQ 96 (103)
T ss_dssp TCCC
T ss_pred CCcC
Confidence 6543
No 62
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=137.36 Aligned_cols=86 Identities=30% Similarity=0.517 Sum_probs=79.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+. .+.|++++|+|++++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEecC
Confidence 4678999999999999999999999999999999999999999999999999999999999995 468999999999999
Q ss_pred CCCCCCC
Q 015040 186 PKDASGG 192 (414)
Q Consensus 186 p~~~~~~ 192 (414)
++.....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqg_A 92 SKQSQDS 98 (103)
T ss_dssp TTCCCCC
T ss_pred CCCcCCC
Confidence 8876543
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=136.02 Aligned_cols=82 Identities=32% Similarity=0.504 Sum_probs=77.8
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3478999999999999999999999999999999999999999999999999999999999999988 699999999999
Q ss_pred cCC
Q 015040 184 ALP 186 (414)
Q Consensus 184 a~p 186 (414)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=138.79 Aligned_cols=84 Identities=44% Similarity=0.814 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|++++|.|+++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 568999999999999999999999999999999999999999999999999999999999999 7789999999999988
Q ss_pred hhhhh
Q 015040 82 SREEQ 86 (414)
Q Consensus 82 ~~~~~ 86 (414)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.2e-18 Score=136.17 Aligned_cols=85 Identities=26% Similarity=0.583 Sum_probs=78.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.++.+ +++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999999998753 89999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cq3_A 91 TARVMTNS 98 (103)
T ss_dssp CSSCCCCC
T ss_pred ccCCCCCC
Confidence 98876654
No 66
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=138.08 Aligned_cols=84 Identities=20% Similarity=0.404 Sum_probs=75.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|++|+|+.+ .++++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999765 4579999999999999999999888 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4a_A 97 RSGRGTGS 104 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98765543
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=141.28 Aligned_cols=85 Identities=29% Similarity=0.533 Sum_probs=79.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||+++|+++|+++|++||.|++|.|+.++ ++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999998 89999999999999999999999998 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8876554
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.8e-18 Score=145.56 Aligned_cols=87 Identities=20% Similarity=0.427 Sum_probs=81.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|++|.|+.++.++++++||||+|+++++|++||+.|+ ..|.+++|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999888 7999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 100 ~~~~~~~~ 107 (126)
T 3ex7_B 100 FVRGPPKG 107 (126)
T ss_dssp EESSSCCC
T ss_pred cCCCCCCC
Confidence 88776543
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=139.60 Aligned_cols=85 Identities=39% Similarity=0.802 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
|..+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999997 7789999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9886553
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=8.6e-19 Score=138.93 Aligned_cols=82 Identities=13% Similarity=0.308 Sum_probs=71.5
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccC--ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYG--HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
.+|||+|||+++|+++|+++|++|| .|++|+|+.|+.+++++|||||+|+++++|++||+.++ .+|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999988 69999999999998
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
|+...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=135.35 Aligned_cols=80 Identities=28% Similarity=0.572 Sum_probs=76.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 467899999999999999999999999999999999999999999999999999999999999988 6999999999998
Q ss_pred C
Q 015040 185 L 185 (414)
Q Consensus 185 ~ 185 (414)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=3e-18 Score=134.60 Aligned_cols=79 Identities=48% Similarity=1.029 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999999999999999999999999999999999 667899999999875
No 73
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=9.4e-19 Score=162.95 Aligned_cols=81 Identities=15% Similarity=0.328 Sum_probs=76.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccC--ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYG--HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||++|+ ++|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999998 799999999999
Q ss_pred cCCC
Q 015040 184 ALPK 187 (414)
Q Consensus 184 a~p~ 187 (414)
++++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 74
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=3.3e-18 Score=134.36 Aligned_cols=79 Identities=38% Similarity=0.739 Sum_probs=75.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.+++.|++++|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3678999999999999999999999999999999999999999999999999999999999988778999999999986
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=7.4e-18 Score=137.16 Aligned_cols=85 Identities=20% Similarity=0.374 Sum_probs=78.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC---eEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG---KLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g---r~i~V 181 (414)
.+.++|||.|||+++++++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.|+ ..|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357899999999999999999999999999999999998 68999999999999999999999988 57887 99999
Q ss_pred EecCCCCCCC
Q 015040 182 KRALPKDASG 191 (414)
Q Consensus 182 ~~a~p~~~~~ 191 (414)
++++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877654
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=135.69 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=77.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|++++.+ +++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 46799999999999999999999999999999999998654 68999999999999999999888 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9876554
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.5e-18 Score=140.51 Aligned_cols=85 Identities=42% Similarity=0.752 Sum_probs=78.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.+++.|++++|+|+++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 35789999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
++...
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=138.66 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++. +++||||||+|+++++|++||+ +.+.|++++|.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999999999987 9999999999999999999999 678999999999998
Q ss_pred hhhhhhc
Q 015040 81 LSREEQH 87 (414)
Q Consensus 81 ~~~~~~~ 87 (414)
....+..
T Consensus 87 ~~~~~~k 93 (103)
T 1s79_A 87 DDYFAKK 93 (103)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8754443
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=140.03 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=74.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
...++|||.|||+++||+||+++|++|+. ++|+|++|+ ++++||||||+|+++++|++||++..+.|.++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999994 599999998 8999999999999999999999653379999999999988
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
++...
T Consensus 91 ~~~~~ 95 (102)
T 1wez_A 91 TAGTS 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76643
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=3.3e-18 Score=145.08 Aligned_cols=84 Identities=32% Similarity=0.531 Sum_probs=79.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||++++ ..|++++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
+++..
T Consensus 124 ~~~~p 128 (129)
T 2kxn_B 124 ITKRP 128 (129)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 88764
No 81
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=137.61 Aligned_cols=84 Identities=26% Similarity=0.515 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 578999999999999999999999999999999999999899999999999999999999997 667999999999999
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876554
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=138.72 Aligned_cols=84 Identities=19% Similarity=0.419 Sum_probs=79.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 357899999999999999999999999999999999999999999999999999999999999888 7999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88653
No 83
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=139.71 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCC----CCCCc
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGD--VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKH----TIDGR 73 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~--V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~----~i~gr 73 (414)
+....||||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.++++|++||+ +.. .|++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999995 7799999999999999999999999999999998 332 58999
Q ss_pred eeeeeechh
Q 015040 74 PVEAKRALS 82 (414)
Q Consensus 74 ~l~v~~a~~ 82 (414)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=136.36 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=78.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
...++|||.|||+++++++|+++|++|+.|++++|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999999998 7999999999998
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7654
No 85
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=5.1e-18 Score=135.98 Aligned_cols=82 Identities=21% Similarity=0.473 Sum_probs=78.1
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
+++|||+|||.++++++|+++|++||.|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999988 699999999999988
Q ss_pred CCC
Q 015040 187 KDA 189 (414)
Q Consensus 187 ~~~ 189 (414)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 753
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=136.09 Aligned_cols=83 Identities=28% Similarity=0.535 Sum_probs=76.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|+.| ..|+|+.++.++++++||||+|+++++|++||+.|+ +.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 467999999999999999999999977 478889999999999999999999999999999888 7999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2fc8_A 90 KPKGEGG 96 (102)
T ss_dssp CCCCSSS
T ss_pred cCCCCCC
Confidence 9987654
No 87
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=4.3e-18 Score=132.96 Aligned_cols=79 Identities=27% Similarity=0.550 Sum_probs=75.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 57899999999999999999999999999999999999999999999999999999999999888 79999999999985
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=7.6e-18 Score=139.46 Aligned_cols=85 Identities=24% Similarity=0.492 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 568999999999999999999999999999999999999899999999999999999999998 668999999999999
Q ss_pred hhhhhhc
Q 015040 81 LSREEQH 87 (414)
Q Consensus 81 ~~~~~~~ 87 (414)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765443
No 89
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=135.33 Aligned_cols=83 Identities=33% Similarity=0.725 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 568999999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=137.44 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=79.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhc-cCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Cc-cCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFEN-YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HE-LNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~-i~gr~i~V~ 182 (414)
.+.++|||.|||+++|+++|+++|++ ||.|++|+|++++ ++++++||||+|+++++|++||+.++ .. |.+++|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35789999999999999999999999 9999999999998 89999999999999999999999998 57 999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998876554
No 91
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=4.8e-18 Score=141.05 Aligned_cols=82 Identities=26% Similarity=0.513 Sum_probs=74.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
...+|||+|||+++||++|+++|++||+|++|+|++|+. .+|+||||+|+++++|++||++|+ +.|++++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999864 479999999999999999999988 79999999999998
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87654
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=5.8e-18 Score=139.06 Aligned_cols=85 Identities=19% Similarity=0.379 Sum_probs=79.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||.++|+++|+++|++||.|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999888 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887643
No 93
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=133.03 Aligned_cols=81 Identities=23% Similarity=0.506 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999999899999999999999999999998 678999999999998
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 94
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=140.20 Aligned_cols=84 Identities=50% Similarity=0.946 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|++++|+|+++.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 568999999999999999999999999999999999999999999999999999999999999 7779999999999988
Q ss_pred hhhhh
Q 015040 82 SREEQ 86 (414)
Q Consensus 82 ~~~~~ 86 (414)
++...
T Consensus 94 ~~~~~ 98 (105)
T 2dh8_A 94 PRGMQ 98 (105)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 95
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=136.93 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=78.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCcee-eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeE----E
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVT-DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKL----V 179 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~----i 179 (414)
.+.++|||.|||+++++++|+++|++||+|+ +|+|++++.++++++||||+|+++++|++||+.++ ..|.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 99999999999999999999999999999999988 6899998 9
Q ss_pred EEEecCCCCC
Q 015040 180 EVKRALPKDA 189 (414)
Q Consensus 180 ~V~~a~p~~~ 189 (414)
+|+++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 96
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=5.1e-18 Score=132.51 Aligned_cols=81 Identities=27% Similarity=0.489 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
++.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 46788999999999999999999999999999999999998999999999999999999999997 7789999999998
Q ss_pred ech
Q 015040 79 RAL 81 (414)
Q Consensus 79 ~a~ 81 (414)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 864
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=4.5e-18 Score=140.94 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999999899999999999999999999997 678999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86654
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.8e-18 Score=138.51 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=78.4
Q ss_pred cccceeEecCCCCCCCHHHHH---HHhhccCceeeeEEeecCCCC---CCceEEEEEeCCHHHHHHHHHHcC-CccCCeE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFR---QYFENYGHVTDVVVMYDQNTQ---RPRGFGFITFETEDAVDNVLQKVF-HELNGKL 178 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg---~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~ 178 (414)
.+.++|||.|||+++++++|+ ++|++||+|++|+|++++.++ +++|||||+|+++++|++||+.|+ +.|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999999988754 566999999999999999999988 6999999
Q ss_pred EEEEecCCCCCCC
Q 015040 179 VEVKRALPKDASG 191 (414)
Q Consensus 179 i~V~~a~p~~~~~ 191 (414)
|+|++++++....
T Consensus 93 l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 93 LKASLGTTKYCSY 105 (111)
T ss_dssp EEEESCCCCSCSS
T ss_pred EEEEecccccccc
Confidence 9999999987543
No 99
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=137.80 Aligned_cols=83 Identities=24% Similarity=0.531 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999999899999999999999999999999 667999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 100
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=139.65 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|++++|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999997 6789999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9886553
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=2.4e-18 Score=135.64 Aligned_cols=82 Identities=29% Similarity=0.594 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
||.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||. +.+.|++++|+|++
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999999999997 67899999999998
Q ss_pred chh
Q 015040 80 ALS 82 (414)
Q Consensus 80 a~~ 82 (414)
+.+
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 865
No 102
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=8.4e-18 Score=132.46 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=76.6
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++|| .++ +.|.+++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 777 79999999999998
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 103
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=132.17 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=76.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
...++|||.|||+++|+++|+++|++| .|++|+|+++ .+++++|||||+|+++++|++||+ ++ ..|.+++|+|+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 357899999999999999999999999 9999999999 789999999999999999999999 77 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++..+
T Consensus 85 ~~~~~s 90 (91)
T 2dgw_A 85 KSGPSS 90 (91)
T ss_dssp SSCCCC
T ss_pred CcCCCC
Confidence 887644
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=136.99 Aligned_cols=83 Identities=30% Similarity=0.602 Sum_probs=79.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||.++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999888 6999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8875
No 105
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=3.3e-18 Score=135.53 Aligned_cols=81 Identities=20% Similarity=0.447 Sum_probs=70.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFG--DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G--~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.+|||+|||++++|++|+++|++|| +|++|+|+.++.|++++|||||+|.++++|++||+ +.+.|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999997 7789999999999988
Q ss_pred hhhhh
Q 015040 82 SREEQ 86 (414)
Q Consensus 82 ~~~~~ 86 (414)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 106
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=7.5e-19 Score=150.84 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=73.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||+++||+||+++|++|+ |++|+|++|++ +++||||||+|+++++|++|| +++ +.|.++.|+|..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 568999999999999999999999999 77999999987 999999999999999999999 555 79999999999998
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
++...
T Consensus 122 ~~~~~ 126 (139)
T 2hgn_A 122 TTGAS 126 (139)
T ss_dssp CSCC-
T ss_pred CCCCC
Confidence 87654
No 107
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=138.10 Aligned_cols=83 Identities=24% Similarity=0.452 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|+++.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999999999999 667899999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 108
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.3e-18 Score=138.40 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCC------CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC-c
Q 015040 3 SDEGKLFIGGIAW------DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG-R 73 (414)
Q Consensus 3 ~~~~tLfVgnLp~------~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g-r 73 (414)
..+++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++||+ +.+.|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999997 7789999 9
Q ss_pred eeeeeechhhhhh
Q 015040 74 PVEAKRALSREEQ 86 (414)
Q Consensus 74 ~l~v~~a~~~~~~ 86 (414)
+|.|+++.+++..
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999887654
No 109
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=138.35 Aligned_cols=84 Identities=33% Similarity=0.725 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ ..+.|++++|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 4568999999999999999999999999999999999999999999999999999999999999 334899999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.+...
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76543
No 110
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=7.2e-18 Score=139.61 Aligned_cols=102 Identities=17% Similarity=0.292 Sum_probs=90.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|.|+++. ++++||||+|.++++|++||+ +.+.|+++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 457899999999999999999999999999999999754 458999999999999999998 678999999999999
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCc
Q 015040 81 LSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGH 134 (414)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 134 (414)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 876543 245667889999999999975
No 111
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=132.77 Aligned_cols=83 Identities=19% Similarity=0.451 Sum_probs=77.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCC-CceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQR-PRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++|||.|||+++|+++|+++|++||.|++|+|+.++.+.. +++||||+|+++++|++|++.++ ..|.+++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468899999999999999999999999999999999988766 89999999999999999999888 7999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
.|+..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-18 Score=141.26 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDV-SQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V-~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++||++|+++|++|+.| ++|+|+.++ +++++|||||+|+++++|++||+ +.+.|++++|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4578999999999999999999999999999 899999998 89999999999999999999999 67799999999999
Q ss_pred chhhhhhcc
Q 015040 80 ALSREEQHN 88 (414)
Q Consensus 80 a~~~~~~~~ 88 (414)
+.+++....
T Consensus 91 a~~~~~~~~ 99 (114)
T 2cpy_A 91 VTLEDMREI 99 (114)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHHH
Confidence 988775543
No 113
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=133.53 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=75.7
Q ss_pred cccceeEecCCCCCCCHHHHH----HHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFR----QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ ++||||+|+++++|++||+.++ .+|.+++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999876 8899999999999999999998 699999999
Q ss_pred EEecCCCCCC
Q 015040 181 VKRALPKDAS 190 (414)
Q Consensus 181 V~~a~p~~~~ 190 (414)
|++++++...
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887543
No 114
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=138.81 Aligned_cols=84 Identities=24% Similarity=0.493 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c------CCCCCCce
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D------KHTIDGRP 74 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~------~~~i~gr~ 74 (414)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ + .+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999998 5 67999999
Q ss_pred eeeeechhhhhh
Q 015040 75 VEAKRALSREEQ 86 (414)
Q Consensus 75 l~v~~a~~~~~~ 86 (414)
|.|+++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999998876543
No 115
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.3e-17 Score=138.69 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=76.3
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..+.++|||.|||+++++++|+++|++||+|++|+|+++++++++++||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999999998 699999999999
Q ss_pred cC
Q 015040 184 AL 185 (414)
Q Consensus 184 a~ 185 (414)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=136.26 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=81.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
++|||+|||+++||++|+++|++||+|++|.|+++ +++||||+|.++++|++||+ +.+.|++++|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999986 67899999999999999998 678999999999999876
Q ss_pred hhhcccCCCCCCCCCCCCCCCccccceeEecCCCC
Q 015040 84 EEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPP 118 (414)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~ 118 (414)
........ .........+|||++|+.
T Consensus 76 ~~~~~~~~---------~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDR---------PPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCS---------CCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCC---------CCccccCCCceecCCCCC
Confidence 53321111 111113467899999973
No 117
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.1e-18 Score=137.69 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|.|+.++.|+++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 467999999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8654
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=134.97 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=72.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC-----eEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG-----KLV 179 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g-----r~i 179 (414)
...++|||.|||+++|+++|+++|++||+|++|+|+++ +||||+|+++++|++||++|+ ++|.+ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999876 799999999999999999998 68999 999
Q ss_pred EEEecCCCCCCC
Q 015040 180 EVKRALPKDASG 191 (414)
Q Consensus 180 ~V~~a~p~~~~~ 191 (414)
+|++++++....
T Consensus 86 ~V~~a~~~~~~~ 97 (108)
T 1x4c_A 86 RVKVDGPRSPSY 97 (108)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999977654
No 119
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=9.9e-18 Score=130.26 Aligned_cols=80 Identities=29% Similarity=0.524 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
+.+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ +.+.|++++|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999998 67899999999999886
Q ss_pred hh
Q 015040 83 RE 84 (414)
Q Consensus 83 ~~ 84 (414)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 120
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-18 Score=135.59 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQV-VIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v-~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
....++|||+|||+++++++|+++|++||+|++| +|++++.++++++||||+|+++++|++||+ +.+.|++++|.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 999998999999999999999999999999 6678999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++.++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9886553
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=4.3e-18 Score=139.97 Aligned_cols=84 Identities=44% Similarity=0.872 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ ..+.|+++.|.|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4578999999999999999999999999999999999999999999999999999999999999 447899999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86543
No 122
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=145.06 Aligned_cols=84 Identities=27% Similarity=0.369 Sum_probs=78.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceee--eEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-C----ccCCeE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD--VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-H----ELNGKL 178 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~----~i~gr~ 178 (414)
...++|||+|||+++||++|+++|++||.|+. |+|++|+.++++||||||+|+++ +|++||+.++ . .|++++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 99999999999999999999999 9999999998 6 899999
Q ss_pred EEEEecCCCCCC
Q 015040 179 VEVKRALPKDAS 190 (414)
Q Consensus 179 i~V~~a~p~~~~ 190 (414)
|+|++++++...
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887654
No 123
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=137.50 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=73.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~ 182 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.++ .+|.+++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999975 7899999999999999999775 48999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 999877654
No 124
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=134.34 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=76.6
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceee--------eEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD--------VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN 175 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~ 175 (414)
..+.++|||+|||+++++++|+++|++||.|++ |+|+.++.+++++|||||+|+++++|++||+.++ ..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346799999999999999999999999999999 9999999999999999999999999999999888 6999
Q ss_pred CeEEEEEecC
Q 015040 176 GKLVEVKRAL 185 (414)
Q Consensus 176 gr~i~V~~a~ 185 (414)
+++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=132.28 Aligned_cols=82 Identities=18% Similarity=0.400 Sum_probs=73.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++|+.| +|+.+ .++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 467999999999999999999999999987 56666 678899999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2fc9_A 89 GPRGSPN 95 (101)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 126
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=134.75 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 89999999999999999999997 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 127
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.9e-18 Score=135.24 Aligned_cols=83 Identities=30% Similarity=0.547 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKT---TGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~---tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v 77 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++. |+++++||||+|.++++|++||+ +.+.|++++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5789999999999999999999999999999999999887 66899999999999999999999 678999999999
Q ss_pred eechhhhh
Q 015040 78 KRALSREE 85 (414)
Q Consensus 78 ~~a~~~~~ 85 (414)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 128
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7.5e-18 Score=134.50 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=75.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||+++|+++|+++|++|+.|++++|+.++.++++++||||+|+++++|++||+.++ +.|.+++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999888 79999999999875
Q ss_pred C
Q 015040 186 P 186 (414)
Q Consensus 186 p 186 (414)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 129
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.7e-17 Score=131.66 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=77.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|+++ ++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999974 68899999999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 8876543
No 130
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=132.51 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=75.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|++++. +++++||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4678999999999999999999999999999999999986 8999999999999999999999888 7999999999998
Q ss_pred CC
Q 015040 185 LP 186 (414)
Q Consensus 185 ~p 186 (414)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 131
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=135.55 Aligned_cols=82 Identities=20% Similarity=0.456 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999999999999999999999999999999998 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=2.9e-18 Score=138.76 Aligned_cols=82 Identities=16% Similarity=0.310 Sum_probs=77.7
Q ss_pred ccceeEecCCCC------CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC-eE
Q 015040 107 KTKKIFVGGLPP------TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG-KL 178 (414)
Q Consensus 107 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g-r~ 178 (414)
..++|||.|||. ++++++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ ..|.+ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999988 79999 99
Q ss_pred EEEEecCCCC
Q 015040 179 VEVKRALPKD 188 (414)
Q Consensus 179 i~V~~a~p~~ 188 (414)
|+|++++|+.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998753
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.6e-18 Score=136.43 Aligned_cols=84 Identities=24% Similarity=0.581 Sum_probs=79.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||.|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 367899999999999999999999999999999999999999999999999999999999999988 6999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
+++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 88764
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-18 Score=136.97 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
...++|||+|||+++||++|+++|++|+.| +|+|++++ ++++||||||+|+++++|++||+ +.+.|.++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 467899999999999999999999999954 99999997 89999999999999999999998 7789999999998876
Q ss_pred hh
Q 015040 82 SR 83 (414)
Q Consensus 82 ~~ 83 (414)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=133.77 Aligned_cols=84 Identities=17% Similarity=0.323 Sum_probs=76.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceee-eEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTD-VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
...++|||+|||+++||++|+++|++|+.|++ |+|+.+ .+++++|||||+|+++++|++||++..+.|.++.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45789999999999999999999999999998 888888 7899999999999999999999999447999999999998
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
.+++..
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 876643
No 136
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.2e-17 Score=136.24 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC---CCceee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI---DGRPVE 76 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i---~gr~l~ 76 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.+ .+++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4578999999999999999999999999999999999999999999999999999999999998 55566 889999
Q ss_pred eeechhhhh
Q 015040 77 AKRALSREE 85 (414)
Q Consensus 77 v~~a~~~~~ 85 (414)
|+++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999886543
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.6e-18 Score=139.00 Aligned_cols=84 Identities=19% Similarity=0.385 Sum_probs=78.1
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
....++|||.|||+++++++|+++|++||.|++|+|+.++.++++++||||+|+++++|++|| .++ +.|.++.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 346789999999999999999999999999999999999999999999999999999999999 777 799999999999
Q ss_pred cCCCCC
Q 015040 184 ALPKDA 189 (414)
Q Consensus 184 a~p~~~ 189 (414)
++++..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 987653
No 138
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=135.91 Aligned_cols=83 Identities=30% Similarity=0.668 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|.|+.++ ++++++||||+|+++++|++||+ +...|++++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 89999999999999999999998 678999999999999
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 866543
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=5.8e-17 Score=131.54 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=72.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|++|+|+ ++||||+|+++++|++||+.|+ +.|++++|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 357899999999999999999999999999999997 4599999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 98776543
No 140
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=135.37 Aligned_cols=81 Identities=21% Similarity=0.422 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ-VVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~-v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++|++|++ |+|+.+ .+++++|||||+|+++++|++||+ +.+.|.++.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46799999999999999999999999999998 888888 789999999999999999999999 778999999999988
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7544
No 141
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=134.95 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=77.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||+.|+ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 357899999999999999999999999999999999997 48999999999999999999999888 7999999999998
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
++....
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 765443
No 142
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=132.69 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999 667999999999987
Q ss_pred hh
Q 015040 81 LS 82 (414)
Q Consensus 81 ~~ 82 (414)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 143
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=2.7e-17 Score=133.82 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC---ceeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG---RPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g---r~l~v 77 (414)
...++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+ +.+.|.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357999999999999999999999999999999999997 79999999999999999999998 6677887 99999
Q ss_pred eechhhhhh
Q 015040 78 KRALSREEQ 86 (414)
Q Consensus 78 ~~a~~~~~~ 86 (414)
+++.++.+.
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 998876543
No 144
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.5e-17 Score=134.43 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=75.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||++|+ ..|.+++|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 467899999999999999999999999999999999998 89999999999999999999999988 7999999999997
Q ss_pred C
Q 015040 185 L 185 (414)
Q Consensus 185 ~ 185 (414)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 145
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=144.92 Aligned_cols=82 Identities=20% Similarity=0.479 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFG--DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G--~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.++|||+|||+++||++|+++|++|| +|++|+|+.++.|+++||||||+|.++++|++||+ +.+.|+++.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999 67899999999999
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876543
No 146
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=134.19 Aligned_cols=82 Identities=26% Similarity=0.520 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ ++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 56899999999999999999999999999999999997 78999999999999999999998 778999999999999
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876543
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=132.92 Aligned_cols=79 Identities=24% Similarity=0.551 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|.+++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 467899999999999999999999999999999999999999999999999999999999997 667899999999887
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.7e-17 Score=134.62 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
...++|||+|||++++|++|+++|++|+ |++|+|++++.|+++++||||+|+++++|++||+ +.+.|.+++|.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4678999999999999999999999996 9999999999999999999999999999999997 6679999999999988
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 149
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=133.12 Aligned_cols=82 Identities=26% Similarity=0.531 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCC-CCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTR-FGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHT-IDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~-~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~-i~gr~l~v~ 78 (414)
...++|||+|||+++||++|+++|++ ||+|++|+|++++ ++++++||||+|.++++|++||+ +.+. |++++|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45799999999999999999999999 9999999999998 89999999999999999999999 5567 999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9876543
No 150
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=136.83 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=77.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|+.|.+..+..++++++||||+|+++++|++||+.|+ ..|.+++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 357899999999999999999999999999766555555578899999999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 98876543
No 151
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=132.62 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCce----e
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVS-QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRP----V 75 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~-~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~----l 75 (414)
...++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++||+ +.+.|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999999999999999999999999 99999999999999999999999999999999 667889998 8
Q ss_pred eeeechhh
Q 015040 76 EAKRALSR 83 (414)
Q Consensus 76 ~v~~a~~~ 83 (414)
+|+++.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88887654
No 152
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.1e-18 Score=136.58 Aligned_cols=86 Identities=26% Similarity=0.589 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999998 67799999999999
Q ss_pred chhhhhhc
Q 015040 80 ALSREEQH 87 (414)
Q Consensus 80 a~~~~~~~ 87 (414)
+.++....
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 88765543
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=134.90 Aligned_cols=84 Identities=24% Similarity=0.462 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRD-KTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEA 77 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~-~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v 77 (414)
+.+.++|||+|||+++++++|+++|++||+|++|+|+++ +.++++++||||+|.++++|++||+ +.+.|.+++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356899999999999999999999999999999999999 7899999999999999999999998 467999999999
Q ss_pred eechhhhh
Q 015040 78 KRALSREE 85 (414)
Q Consensus 78 ~~a~~~~~ 85 (414)
+++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 154
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.2e-17 Score=127.42 Aligned_cols=74 Identities=42% Similarity=0.806 Sum_probs=70.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ +.+.|++++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999999 778999999999875
No 155
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=128.91 Aligned_cols=78 Identities=27% Similarity=0.573 Sum_probs=72.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+ ++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 367899999999999999999999999999999998 6799999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 156
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.1e-17 Score=132.35 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=77.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechh
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~ 82 (414)
+++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|+++.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999999999997 77899999999999987
Q ss_pred hhhh
Q 015040 83 REEQ 86 (414)
Q Consensus 83 ~~~~ 86 (414)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6544
No 157
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=135.31 Aligned_cols=82 Identities=30% Similarity=0.688 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|.+++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7653
No 158
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=145.45 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=76.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccC--ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYG--HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..++|||+|||+++||++|+++|++|| .|++|+|+.|+.+++++|||||+|+++++|++||+.|+ ..|.+++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999999998 799999999999
Q ss_pred cCCC
Q 015040 184 ALPK 187 (414)
Q Consensus 184 a~p~ 187 (414)
++++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 159
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-18 Score=139.67 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+.++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||. +.+.|+++.|.|+++.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999997 67799999999999988
Q ss_pred hhhhcc
Q 015040 83 REEQHN 88 (414)
Q Consensus 83 ~~~~~~ 88 (414)
+.....
T Consensus 104 ~~~~~~ 109 (114)
T 2cq4_A 104 EKNRLS 109 (114)
T ss_dssp HHHHHS
T ss_pred CccCCC
Confidence 766543
No 160
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-18 Score=129.03 Aligned_cols=76 Identities=45% Similarity=0.794 Sum_probs=73.5
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
++|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++|++.+++.|++++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999987
No 161
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=131.33 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=72.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~ 182 (414)
.+.++|||+|||+++||++|+++|++||.|++|.|+++ |+||||+|+++++|++||+.++ .+|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 36789999999999999999999999999999999865 7899999999999999999764 47999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999877654
No 162
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=138.25 Aligned_cols=83 Identities=27% Similarity=0.432 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++||++|+++|++| .|++|+|+.++. ++++|||||+|+++++|++||+ +.+.|.++.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 346799999999999999999999999 999999999975 9999999999999999999998 7789999999999988
Q ss_pred hhhhhc
Q 015040 82 SREEQH 87 (414)
Q Consensus 82 ~~~~~~ 87 (414)
+++...
T Consensus 92 ~~~~~~ 97 (109)
T 2dnn_A 92 ERQWVA 97 (109)
T ss_dssp HHHHHH
T ss_pred ccchhh
Confidence 765443
No 163
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=7.7e-17 Score=135.31 Aligned_cols=85 Identities=16% Similarity=0.306 Sum_probs=79.1
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
....++|||.|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999888 699999999999
Q ss_pred cCCCCCC
Q 015040 184 ALPKDAS 190 (414)
Q Consensus 184 a~p~~~~ 190 (414)
|.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9886654
No 164
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.5e-17 Score=137.32 Aligned_cols=83 Identities=17% Similarity=0.433 Sum_probs=77.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++|+++|+++|++||.|++|+|+.++.++++++||||+|+++++|++|| +++ +.|.+++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 676 79999999999998
Q ss_pred CCCCC
Q 015040 186 PKDAS 190 (414)
Q Consensus 186 p~~~~ 190 (414)
++...
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 165
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=134.50 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGD-VSQVVIM-RDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVE 76 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~-V~~v~i~-~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~ 76 (414)
.+.++|||+|||+++++++|+++|++||+ |++|.|+ .++.++++++||||+|.++++|++||+ + .+.|++++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 56789999999999999999999999998 9999998 788889999999999999999999999 3 3689999999
Q ss_pred eeechhhhhh
Q 015040 77 AKRALSREEQ 86 (414)
Q Consensus 77 v~~a~~~~~~ 86 (414)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876543
No 166
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=137.95 Aligned_cols=82 Identities=49% Similarity=0.897 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|+++.|.|+++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999999 66789999999999887
Q ss_pred hhh
Q 015040 83 REE 85 (414)
Q Consensus 83 ~~~ 85 (414)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=135.48 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=73.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
....+|||+|||+++||+||+++|++| .|++|+|++|++ ++++|||||+|+++++|++||++..+.|.++.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456899999999999999999999999 999999999986 999999999999999999999544479999999999987
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
++.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 168
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=131.17 Aligned_cols=79 Identities=27% Similarity=0.603 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++||+ +.+.|++++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35679999999999999999999999999999999999975 8999999999999999999998 77899999999998
Q ss_pred ch
Q 015040 80 AL 81 (414)
Q Consensus 80 a~ 81 (414)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 169
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=134.82 Aligned_cols=82 Identities=23% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTT-GRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~t-g~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++|| |++|+|++++.+ +++++||||+|.++++|++||. +.+.|.+++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4578999999999999999999999999 999999999887 8999999999999999999997 677999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87554
No 170
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=137.84 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=76.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++|+.| +.|+|++|+ +++++|||||+|+++++|++||++..+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 457899999999999999999999999999 899999998 899999999999999999999999447999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8765
No 171
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.7e-17 Score=138.38 Aligned_cols=84 Identities=17% Similarity=0.333 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGD---VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~---V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~ 78 (414)
.+.++|||+|||+++||++|+++|++|++ |++|+|+.++. ++++|||||+|+++++|++||+ +.+.|.++.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45789999999999999999999999999 89999999976 9999999999999999999999 6679999999999
Q ss_pred echhhhhhc
Q 015040 79 RALSREEQH 87 (414)
Q Consensus 79 ~a~~~~~~~ 87 (414)
++..++.+.
T Consensus 94 ~a~~~~~~~ 102 (118)
T 2db1_A 94 KSHRTEMDW 102 (118)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998776443
No 172
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=132.65 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=70.3
Q ss_pred ccceeEecCCCC-CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEE
Q 015040 107 KTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVK 182 (414)
Q Consensus 107 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~ 182 (414)
+.++|||+|||+ ++||+||+++|++||.|++|+|+++ |+||||+|+++++|++||+.++ .+|.+++|.|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 678999999999 9999999999999999999999875 4799999999999999999887 35999999999
Q ss_pred ecCCCCC
Q 015040 183 RALPKDA 189 (414)
Q Consensus 183 ~a~p~~~ 189 (414)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9986554
No 173
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.1e-17 Score=140.17 Aligned_cols=82 Identities=27% Similarity=0.504 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +...|++++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+++
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7653
No 174
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=132.73 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+ +++||||+|.++++|++||+ +.+.|.+++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 356799999999999999999999999999999999998654 68999999999999999998 66789999999999
Q ss_pred chhhhhh
Q 015040 80 ALSREEQ 86 (414)
Q Consensus 80 a~~~~~~ 86 (414)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875543
No 175
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=132.09 Aligned_cols=83 Identities=27% Similarity=0.527 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++. .+++||||+|.++++|++||+ +.+.|++++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999999999999999864 389999999999999999998 67899999999999
Q ss_pred chhhhhh
Q 015040 80 ALSREEQ 86 (414)
Q Consensus 80 a~~~~~~ 86 (414)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 8876543
No 176
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=134.58 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=78.0
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCc-eeeeEEe-ecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGH-VTDVVVM-YDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V 181 (414)
+.++|||+|||+++|+++|+++|++||. |++|.|+ .++.++++++||||+|+++++|++||+.++ ..|.+++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5689999999999999999999999998 9999999 888999999999999999999999999985 5899999999
Q ss_pred EecCCCCC
Q 015040 182 KRALPKDA 189 (414)
Q Consensus 182 ~~a~p~~~ 189 (414)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998765
No 177
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=133.67 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999997 58999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 178
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=136.54 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVS--------QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG 72 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~--------~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g 72 (414)
.+.++|||+|||+++++++|+++|++||+|+ .|+|+.++.++++++||||+|.++++|++||+ +.+.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4689999999999999999999999999999 69999999999999999999999999999998 7789999
Q ss_pred ceeeeeechhhhh
Q 015040 73 RPVEAKRALSREE 85 (414)
Q Consensus 73 r~l~v~~a~~~~~ 85 (414)
++|.|+++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999887554
No 179
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=134.30 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~v~ 78 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ + ..+|.+++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 56899999999999999999999999999999999975 5899999999999999998 3 257999999999
Q ss_pred echhhhhh
Q 015040 79 RALSREEQ 86 (414)
Q Consensus 79 ~a~~~~~~ 86 (414)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 98865543
No 180
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=130.41 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ--------VVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG 72 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~--------v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g 72 (414)
...++|||+|||+++++++|+++|++||.|++ |+|+.++.++++++||||+|.++++|++||+ +.+.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 9999999999999999999999999999998 7789999
Q ss_pred ceeeeeech
Q 015040 73 RPVEAKRAL 81 (414)
Q Consensus 73 r~l~v~~a~ 81 (414)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998863
No 181
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=130.78 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=70.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-C--ccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-H--ELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~--~i~gr~i~V~~ 183 (414)
++++|||+|||+++||++|+++|++||.|++|+|++ .|+||||+|+++++|++|++.++ . .|.+++|.|++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 678999999999999999999999999999999985 37899999999999999999987 4 48999999999
Q ss_pred cCCCC
Q 015040 184 ALPKD 188 (414)
Q Consensus 184 a~p~~ 188 (414)
+++++
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98875
No 182
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=140.56 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.+++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999998 667899999999998
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 183
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=138.77 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCe----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDV----SQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V----~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v 77 (414)
.+.++|||+|||+++||++|+++|++|++| ++|+|+.++ +++++|||||+|+++++|++||+ +.+.|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 467899999999999999999999999975 689999984 89999999999999999999999 678999999999
Q ss_pred eechhhhhhc
Q 015040 78 KRALSREEQH 87 (414)
Q Consensus 78 ~~a~~~~~~~ 87 (414)
..+.+++.+.
T Consensus 100 ~~a~~~e~~~ 109 (123)
T 2dha_A 100 FRSTAAEVQQ 109 (123)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9987766443
No 184
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=127.16 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=72.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|++|+|++ +||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3678999999999999999999999999999999983 399999999999999999988 6999999999999
Q ss_pred CCCCCCCC
Q 015040 185 LPKDASGG 192 (414)
Q Consensus 185 ~p~~~~~~ 192 (414)
+++.....
T Consensus 80 ~~~~~~~~ 87 (92)
T 2dgt_A 80 TSRLRTAS 87 (92)
T ss_dssp SCCCSCCC
T ss_pred cCCCCCCC
Confidence 98876543
No 185
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=4.4e-17 Score=142.38 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|+.++.|+++++||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999999999999999999999999999999999999 678999999999998
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.+.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 186
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=127.39 Aligned_cols=75 Identities=47% Similarity=0.938 Sum_probs=71.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ ..+.+++++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999 338999999999886
No 187
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=134.21 Aligned_cols=80 Identities=14% Similarity=0.305 Sum_probs=73.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|++|+. ++++|||||+|+++++|++||+...+.|++++|+|+++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3578999999999999999999999999999999999988 999999999999999999999943379999999999865
Q ss_pred C
Q 015040 186 P 186 (414)
Q Consensus 186 p 186 (414)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.3e-17 Score=127.09 Aligned_cols=74 Identities=32% Similarity=0.660 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
||||+|||++++|++|+++|++||+|++|.|++++.++++++||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999 668999999999874
No 189
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.5e-17 Score=132.78 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++|++|++|+++.++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999999999999999999999999999999999998 778999999999987
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 190
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.3e-17 Score=141.00 Aligned_cols=84 Identities=15% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGD---VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~---V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~ 78 (414)
.+.++|||+|||+++||++|+++|++||+ |++|+|++++. +++||||||+|+++++|++||+ +.+.|.++.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 46789999999999999999999999999 89999999987 9999999999999999999999 6679999999999
Q ss_pred echhhhhhc
Q 015040 79 RALSREEQH 87 (414)
Q Consensus 79 ~a~~~~~~~ 87 (414)
++.+++.+.
T Consensus 121 ~a~~~e~~~ 129 (136)
T 2hgl_A 121 KSHRTEMDW 129 (136)
T ss_dssp ECCHHHHHH
T ss_pred ECChHHHHH
Confidence 988766543
No 191
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.8e-17 Score=126.35 Aligned_cols=75 Identities=52% Similarity=0.952 Sum_probs=70.5
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
+|||+|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+...+.|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999984337999999999875
No 192
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2.5e-17 Score=138.82 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVS--QVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~--~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~ 79 (414)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++++. +++||||||+|+++++|++||+ +.+.|.++.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 457899999999999999999999999 777 999999986 9999999999999999999999 66899999999999
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 876653
No 193
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=135.72 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=72.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~~ 183 (414)
+.++|||+|||+++||++|+++|++||.|++|+|+++ |+||||+|+++++|++||+.++ .+|.+++|+|++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 5789999999999999999999999999999999976 6899999999999999999886 479999999999
Q ss_pred cCCCCCCC
Q 015040 184 ALPKDASG 191 (414)
Q Consensus 184 a~p~~~~~ 191 (414)
++++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 99887654
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=3.3e-17 Score=137.83 Aligned_cols=84 Identities=19% Similarity=0.442 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 467899999999999999999999999999999999999999999999999999999999997 778999999999999
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 866543
No 195
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.2e-17 Score=137.29 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999998 677899999999876
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 196
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=131.42 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=72.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V~ 182 (414)
.+.++|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|+++++|++||+.++ ..|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 36789999999999999999999999999999999864 7899999999999999999875 35999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 998876543
No 197
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=135.05 Aligned_cols=83 Identities=18% Similarity=0.404 Sum_probs=76.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||+|||+++|+++|+++|++||.|+. .++.++.++++++||||+|+++++|++||+ ++ ..|.+++|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5689999999999999999999999999998 778888889999999999999999999999 77 79999999999999
Q ss_pred CCCCCC
Q 015040 186 PKDASG 191 (414)
Q Consensus 186 p~~~~~ 191 (414)
++..++
T Consensus 94 ~~~~~~ 99 (101)
T 1fj7_A 94 GRDGTR 99 (101)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 877654
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=130.62 Aligned_cols=79 Identities=16% Similarity=0.472 Sum_probs=74.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++++++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.++ ..|.++.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999988 68999999887653
No 199
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8e-17 Score=129.19 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=72.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC--CeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN--GKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~--gr~i~V~ 182 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.++ ..|. +++|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35689999999999999999999999999999999854 6799999999999999999988 6899 9999999
Q ss_pred ecCCCCC
Q 015040 183 RALPKDA 189 (414)
Q Consensus 183 ~a~p~~~ 189 (414)
+++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998764
No 200
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=140.41 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCC----CCCCce
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ--VVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKH----TIDGRP 74 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~--v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~----~i~gr~ 74 (414)
...++|||+|||+++||++|+++|++||+|+. |+|++++.|+++||||||+|.++ +|++||+ +.+ .|++++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 99999999999999999999999 9999998 666 899999
Q ss_pred eeeeechhhhh
Q 015040 75 VEAKRALSREE 85 (414)
Q Consensus 75 l~v~~a~~~~~ 85 (414)
|.|+++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999886543
No 201
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=7.7e-17 Score=127.77 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999999999984 78899999999999999999998 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 202
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=3.3e-17 Score=134.52 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999999999999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7654
No 203
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-17 Score=129.30 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|+++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 568999999999999999999999999999999999999999999999999999999999998 667889998888765
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 204
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=134.39 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=74.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecC-CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQ-NTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
...++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|+++++|++|| +++ ..|.++.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 9999999998 68999999999999999999999 677 799999999999
Q ss_pred cCCCC
Q 015040 184 ALPKD 188 (414)
Q Consensus 184 a~p~~ 188 (414)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98864
No 205
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=128.99 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++++++|+++|++| .|++|+|+++ .++++++||||+|.++++|++||+ +.+.|.++.|+|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567999999999999999999999999 9999999999 789999999999999999999999 6668999999999987
Q ss_pred hh
Q 015040 82 SR 83 (414)
Q Consensus 82 ~~ 83 (414)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 206
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=131.81 Aligned_cols=81 Identities=17% Similarity=0.392 Sum_probs=75.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc--------CC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL--------NG 176 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i--------~g 176 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.++ ..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 89999999999999999999999988 577 58
Q ss_pred eEEEEEecCCC
Q 015040 177 KLVEVKRALPK 187 (414)
Q Consensus 177 r~i~V~~a~p~ 187 (414)
++|+|+++.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999875
No 207
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=133.19 Aligned_cols=81 Identities=27% Similarity=0.612 Sum_probs=75.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||.++|+++|+++|++||+|++|+|+.++. .+++||||+|+++++|++|++.++ ..|++++|+|+++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999999864 489999999999999999999888 6999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8864
No 208
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=139.62 Aligned_cols=83 Identities=16% Similarity=0.334 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++||++|+++|++||+|+++.++.++.+++++|||||+|+++++|++||+ +.+.|+++.|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 356899999999999999999999999999997777777899999999999999999999999 6789999999999988
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
+++.
T Consensus 103 ~~~~ 106 (124)
T 1wel_A 103 KKGM 106 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 209
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-17 Score=132.89 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++|++|++++++.++.++++++||||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999997 667999999999987
Q ss_pred hh
Q 015040 81 LS 82 (414)
Q Consensus 81 ~~ 82 (414)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 210
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=138.89 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=76.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
...++|||.|||+++|+++|+++|++||.|+++.++.+..+++++|||||+|+++++|++||+ ++ +.|.+++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999998888888899999999999999999999999 66 7999999999998
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 211
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-18 Score=144.04 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=79.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceee--------eEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTD--------VVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK 177 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr 177 (414)
+.++|||.|||+++++++|+++|++||.|+. |+|+.++.++++++||||+|+++++|++||+.|+ ..|.++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 5789999999999999999999999999999 9999999999999999999999999999999988 699999
Q ss_pred EEEEEecCCCCCCC
Q 015040 178 LVEVKRALPKDASG 191 (414)
Q Consensus 178 ~i~V~~a~p~~~~~ 191 (414)
+|+|++++++....
T Consensus 86 ~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 86 PIKVSFATRRADFN 99 (116)
Confidence 99999999887653
No 212
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=7.9e-17 Score=131.46 Aligned_cols=78 Identities=21% Similarity=0.484 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +.+.|.+++|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357899999999999999999999999999999999998 89999999999999999999999 778999999999987
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 213
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=126.66 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=71.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhcc--CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENY--GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVK 182 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~ 182 (414)
.+.++|||.|||+++|+++|+++|++| +.|++|+++ ++||||+|+++++|++||+.++ ..|.+++|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367899999999999999999999999 999999885 6799999999999999999888 69999999999
Q ss_pred ecCCCCCCC
Q 015040 183 RALPKDASG 191 (414)
Q Consensus 183 ~a~p~~~~~ 191 (414)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2cpd_A 85 LAKPVDKDS 93 (99)
T ss_dssp CCCCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 214
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.6e-17 Score=135.78 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=74.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCc---eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGH---VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
...++|||+|||+++||++|+++|++|+. |+.|+|+++++ ++++|||||+|+++++|++||+ ++ +.|.++.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35689999999999999999999999999 89999999987 9999999999999999999999 56 7999999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
.++++++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 215
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.5e-17 Score=126.79 Aligned_cols=75 Identities=40% Similarity=0.767 Sum_probs=71.7
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEec
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRA 184 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a 184 (414)
+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++||++..+.|.+++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999998668999999999875
No 216
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=135.24 Aligned_cols=80 Identities=26% Similarity=0.534 Sum_probs=75.4
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..+.++|||.|||.++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3467999999999999999999999999999999999999999999999999999999999999998 699999999998
Q ss_pred c
Q 015040 184 A 184 (414)
Q Consensus 184 a 184 (414)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 217
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=128.27 Aligned_cols=81 Identities=21% Similarity=0.498 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGR-PRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~-~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
.+.++|||+|||++++|++|+++|++||+|++|.|+.++.+.. +++||||+|.++++|++|++ +.+.|+++.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4678999999999999999999999999999999999987766 89999999999999999999 77899999999998
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 218
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=7.3e-17 Score=132.56 Aligned_cols=76 Identities=18% Similarity=0.432 Sum_probs=69.7
Q ss_pred ccceeEecCCCCC-CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPT-LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++|||.|||++ +|+++|+++|++||+|++|+| +++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999999 47899999999999999999988 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++...
T Consensus 98 ~~~~~~ 103 (110)
T 1wf1_A 98 GEPKPD 103 (110)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 865543
No 219
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.8e-17 Score=139.72 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=75.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCc---eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGH---VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
...++|||+|||+++||++|+++|++||. |++|+|++|++ +++||||||+|+++++|++||+ ++ ++|.++.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35689999999999999999999999999 89999999988 9999999999999999999999 66 7999999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
.++.+++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987654
No 220
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=132.77 Aligned_cols=80 Identities=25% Similarity=0.505 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDK-TTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~-~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++|| |++|+|++++ .++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4679999999999999999999999999 9999999998 689999999999999999999997 677999999999998
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 764
No 221
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=6.6e-17 Score=150.46 Aligned_cols=81 Identities=19% Similarity=0.425 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFG--DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G--~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.++|||+|||+++||++|+++|++|| +|++|+|++++.|+++||||||+|+++++|++||+ +.+.|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999998 66799999999999
Q ss_pred chhhh
Q 015040 80 ALSRE 84 (414)
Q Consensus 80 a~~~~ 84 (414)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87654
No 222
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=134.01 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGD---VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~---V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~ 78 (414)
.+.++|||+|||+++||++|+++|++||. |++|+|+.++. ++++|||||+|.++++|++||+ +.+.|.++.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999988 89999999987 9999999999999999999999 6679999999999
Q ss_pred echhhhhhc
Q 015040 79 RALSREEQH 87 (414)
Q Consensus 79 ~a~~~~~~~ 87 (414)
++.+++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 988766443
No 223
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.4e-17 Score=131.54 Aligned_cols=81 Identities=31% Similarity=0.682 Sum_probs=72.7
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
++|||+|||.++++++|+++|++||+|++|+|++++.++++++||||+|++++ |++|++.++ ..|.+++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999998 6999999999999886
Q ss_pred CCC
Q 015040 188 DAS 190 (414)
Q Consensus 188 ~~~ 190 (414)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 224
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=127.85 Aligned_cols=80 Identities=34% Similarity=0.605 Sum_probs=73.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.++ +.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 7899999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2cpj_A 87 CHSASLT 93 (99)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 9876543
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=125.15 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=71.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|||+++|+++|+++|++||.|++|+|++ +||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3678999999999999999999999999999999983 399999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 79 ~~~~~~~ 85 (90)
T 2dnp_A 79 TKGQKKS 85 (90)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 226
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=126.70 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=71.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
...++|||.|||+++|+++|+++|++||.|+ ++|+.+ ++++||||+|+++++|++||+.|+ ..|.+++|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999997 777755 568999999999999999999988 6999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 227
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=3.9e-17 Score=136.97 Aligned_cols=80 Identities=21% Similarity=0.588 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|+++.|.|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999997 66789999999998874
Q ss_pred h
Q 015040 83 R 83 (414)
Q Consensus 83 ~ 83 (414)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=2.9e-17 Score=138.46 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=74.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCcee--eeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVT--DVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~ 183 (414)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++|++ +++||||||+|+++++|++||++++..|.++.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 356889999999999999999999999 676 999999988 9999999999999999999999877899999999998
Q ss_pred cCCCC
Q 015040 184 ALPKD 188 (414)
Q Consensus 184 a~p~~ 188 (414)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87643
No 229
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.9e-17 Score=129.74 Aligned_cols=80 Identities=25% Similarity=0.625 Sum_probs=71.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhh
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSR 83 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~ 83 (414)
++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.+++ |++|++ +.+.|++++|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999998 677999999999998876
Q ss_pred hhh
Q 015040 84 EEQ 86 (414)
Q Consensus 84 ~~~ 86 (414)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 230
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=2.5e-17 Score=133.31 Aligned_cols=82 Identities=27% Similarity=0.622 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechh
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||++.+.|++++|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 357899999999999999999999999999999999998 8999999999999999999999977899999999999886
Q ss_pred hhh
Q 015040 83 REE 85 (414)
Q Consensus 83 ~~~ 85 (414)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 554
No 231
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=129.47 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLR----DYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~----e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
.+.++|||+|||++++|++|+ ++|++||+|++|+|+.++.+ |+||||+|+++++|++||+ +.+.|++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999998776 7899999999999999999 66789999999
Q ss_pred eeechhhh
Q 015040 77 AKRALSRE 84 (414)
Q Consensus 77 v~~a~~~~ 84 (414)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99987543
No 232
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=130.62 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++||++|+++|++||+|++|+|+.+ .++++||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999654 4589999999999999999997 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 233
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=129.07 Aligned_cols=79 Identities=22% Similarity=0.494 Sum_probs=73.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||.++++++|+++|++||.|++|+|+.+ ++||||+|+++++|++||+.|+ ..|.+++|+|++++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4689999999999999999999999999999999876 7899999999999999999988 69999999999999
Q ss_pred CCCCCC
Q 015040 186 PKDASG 191 (414)
Q Consensus 186 p~~~~~ 191 (414)
++....
T Consensus 98 ~~~~~~ 103 (109)
T 1x4g_A 98 ESPDMT 103 (109)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 234
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=5.2e-17 Score=138.73 Aligned_cols=82 Identities=30% Similarity=0.514 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999999899999999999999999999998 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+..
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 235
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=131.90 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~v~ 78 (414)
..+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ + ...|.+++|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999976 5899999999999999998 3 368999999999
Q ss_pred echhhhhh
Q 015040 79 RALSREEQ 86 (414)
Q Consensus 79 ~a~~~~~~ 86 (414)
++.+++..
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 98865543
No 236
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.3e-16 Score=131.58 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=70.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
...+|||+|||+++||++|+++|++|| +|+.|.|+.+ +++|||||+|+++++|++||++++ .+|++++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 8999998643 478999999999999999999998 6999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+.++
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 237
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=126.26 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=72.3
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||+++|+++|+++|++|+.|+.+ ..++++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 367899999999999999999999999988766 3457889999999999999999999998 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 887654
No 238
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=136.65 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=73.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCce----eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHV----TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVK 182 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~ 182 (414)
...+|||+|||+++||+||+++|++|++| ++|+|++| .+++++|||||+|+++++|++||++..+.|.++.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46889999999999999999999999875 68999998 47999999999999999999999985579999999999
Q ss_pred ecCCCC
Q 015040 183 RALPKD 188 (414)
Q Consensus 183 ~a~p~~ 188 (414)
.+.+++
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887644
No 239
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3.5e-17 Score=140.39 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
.+.++|||+|||+++||++|+++|++|+ |++|+|++++. +++||||||+|+++++|++||+ +.+.|.++.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999976 9999999999999999999998 6789999999998877
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
+++
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 240
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=1.8e-16 Score=133.04 Aligned_cols=82 Identities=20% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +.+.|+++.|+|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 356899999999999999999999999999999999998 89999999999999999999998 677999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 86543
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=128.48 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH----cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ----DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~----~~~~i~gr~l~v~ 78 (414)
..+++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ +...|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998875 6899999999999999998 2457999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9886543
No 242
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=129.69 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC--------C
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI--------D 71 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i--------~ 71 (414)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+ +.+.| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567999999999999999999999999999999999998 89999999999999999999998 66677 4
Q ss_pred Cceeeeeechh
Q 015040 72 GRPVEAKRALS 82 (414)
Q Consensus 72 gr~l~v~~a~~ 82 (414)
+++|.|+++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 66677776653
No 243
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-17 Score=133.26 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=75.1
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCc---eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGH---VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
...++|||+|||+++|+++|+++|++|+. |+.|+|++++. ++++|||||+|+++++|++||+ ++ +.|.++.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35789999999999999999999999998 89999999988 9999999999999999999999 56 7999999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9988754
No 244
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.9e-16 Score=123.70 Aligned_cols=72 Identities=8% Similarity=0.152 Sum_probs=67.9
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+..|+|+||++.+||++|+++|.+||+|++++|+. +||||||+|.++++|++|++.|| .+|.+++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999975 58999999999999999999999 59999999999984
No 245
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=127.52 Aligned_cols=77 Identities=22% Similarity=0.419 Sum_probs=71.9
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCCC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALPK 187 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p~ 187 (414)
++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.++ ..|.+++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999977 68999999999999999999888 7999999999999987
Q ss_pred CCC
Q 015040 188 DAS 190 (414)
Q Consensus 188 ~~~ 190 (414)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 246
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=125.12 Aligned_cols=78 Identities=24% Similarity=0.528 Sum_probs=69.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCc-eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC--CccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGH-VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF--HELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~--~~i~gr~i~V~~ 183 (414)
+.++|||+|||+++|+++|+++|++||. |+.+.|. +++||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5789999999999999999999999999 6666653 47899999999999999999887 589999999999
Q ss_pred cCCCCCCC
Q 015040 184 ALPKDASG 191 (414)
Q Consensus 184 a~p~~~~~ 191 (414)
++++..+.
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 99876654
No 247
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=2e-16 Score=138.28 Aligned_cols=81 Identities=31% Similarity=0.520 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +.+.|.+++|.|+++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999999999998 6678999999999988
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
++.
T Consensus 149 ~~~ 151 (158)
T 2kn4_A 149 YGR 151 (158)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 248
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=125.48 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=69.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
+.++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|+++++|++|+.. ...+.+++|+|++++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5689999999999999999999999999999999865 689999999999999875443 3577999999999998
Q ss_pred CCCCC
Q 015040 187 KDASG 191 (414)
Q Consensus 187 ~~~~~ 191 (414)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 249
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.8e-16 Score=131.51 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=66.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeE-----EE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKL-----VE 180 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~-----i~ 180 (414)
..++|||.|||+++||++|+++|++||+|++|.|+.+ +||||+|+++++|++||++|+ ++|++++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999866 799999999999999999988 6999988 88
Q ss_pred EEecCCCCCCC
Q 015040 181 VKRALPKDASG 191 (414)
Q Consensus 181 V~~a~p~~~~~ 191 (414)
|+.+.++....
T Consensus 88 v~~~~~~~~~~ 98 (115)
T 3beg_B 88 VKVDGPRSPSY 98 (115)
T ss_dssp EEECC----CC
T ss_pred eccCCCCCCCC
Confidence 88877765443
No 250
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=128.18 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=73.5
Q ss_pred ccceeEecCCCCCC------CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe-E
Q 015040 107 KTKKIFVGGLPPTL------TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK-L 178 (414)
Q Consensus 107 ~~~~lfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr-~ 178 (414)
..++|||+|||+.+ |+++|+++|++||.|++|.|+ +.+++++|||||+|+++++|++||+.++ ..|.++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999998 4678999999999999999999999998 699998 9
Q ss_pred EEEEecCCCC
Q 015040 179 VEVKRALPKD 188 (414)
Q Consensus 179 i~V~~a~p~~ 188 (414)
|+|+++.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 251
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.2e-16 Score=129.23 Aligned_cols=82 Identities=27% Similarity=0.605 Sum_probs=75.9
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
...++|||+|||+++++++|+++|++||.|++|+|+.++ ++++++||||+|+++++|++||+ ..+.|++++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 467899999999999999999999999999999999998 89999999999999999999999 5579999999999998
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7654
No 252
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=129.23 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=71.2
Q ss_pred cccceeEecCCCCC-CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC---CccCCeEEEE
Q 015040 106 FKTKKIFVGGLPPT-LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF---HELNGKLVEV 181 (414)
Q Consensus 106 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~---~~i~gr~i~V 181 (414)
.+.++|||+|||++ +||++|+++|++||.|++|+|++ .|+||||+|+++++|++||+.++ ..|.+++|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 36789999999998 99999999999999999999974 37899999999999999999875 3699999999
Q ss_pred EecCCCCCC
Q 015040 182 KRALPKDAS 190 (414)
Q Consensus 182 ~~a~p~~~~ 190 (414)
++++++...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999876654
No 253
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-17 Score=132.14 Aligned_cols=82 Identities=20% Similarity=0.418 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHH---HHhhccCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHH--cCCCCCCce
Q 015040 3 SDEGKLFIGGIAWDTTEGTLR---DYFTRFGDVSQVVIMRDKTTG---RPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRP 74 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~---e~F~~~G~V~~v~i~~~~~tg---~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~ 74 (414)
...++|||+|||++++|++|+ ++|++||+|++|.|++++.++ ++++||||+|+++++|++||+ +.+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999987643 567999999999999999999 678999999
Q ss_pred eeeeechhhh
Q 015040 75 VEAKRALSRE 84 (414)
Q Consensus 75 l~v~~a~~~~ 84 (414)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999988664
No 254
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=126.66 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~v~ 78 (414)
..+++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ + ...|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999999864 5799999999999999998 2 346999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9886543
No 255
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=134.41 Aligned_cols=78 Identities=27% Similarity=0.498 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.+++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 468999999999999999999999999999999999999999999999999999999999997 567899999999875
No 256
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=120.97 Aligned_cols=74 Identities=28% Similarity=0.470 Sum_probs=68.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc-C-CccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV-F-HELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~-~-~~i~gr~i~V~~ 183 (414)
.+.++|||.|||.++++++|+++|++||+|++|+|+++ ++||||+|+++++|++|++.+ + ..|.+++|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 46789999999999999999999999999999999864 689999999999999999987 6 699999999999
Q ss_pred cC
Q 015040 184 AL 185 (414)
Q Consensus 184 a~ 185 (414)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 257
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.7e-16 Score=126.99 Aligned_cols=75 Identities=17% Similarity=0.406 Sum_probs=69.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||+|||.++++++|+++|++||.|++|+|+ ++++||||+|++.++|++||+.++ ..|++++|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999998 357899999999999999999988 69999999999998
Q ss_pred CC
Q 015040 186 PK 187 (414)
Q Consensus 186 p~ 187 (414)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 258
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=1.7e-16 Score=125.64 Aligned_cols=78 Identities=28% Similarity=0.501 Sum_probs=65.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechh
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++....+.+.+++|.|+++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 46789999999999999999999999999999999874 6899999999999999655455567899999999887
Q ss_pred hhh
Q 015040 83 REE 85 (414)
Q Consensus 83 ~~~ 85 (414)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 259
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.8e-16 Score=122.77 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
.+.-|||+||++.+||++|+++|.+||+|++|+|+. +||||||+|.++++|++|++ +..++.+++|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999975 57999999999999999999 6779999999999885
Q ss_pred hh
Q 015040 82 SR 83 (414)
Q Consensus 82 ~~ 83 (414)
+.
T Consensus 80 e~ 81 (89)
T 2wbr_A 80 EN 81 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 260
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=131.13 Aligned_cols=78 Identities=24% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTT---GRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~t---g~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~ 79 (414)
.+.++|||+|||++++|++|+++|++||+|+ +.++.++.+ +++|+||||+|+++++|++||+..+.++++.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5689999999999999999999999999999 888888777 699999999999999999999977788999988875
Q ss_pred ch
Q 015040 80 AL 81 (414)
Q Consensus 80 a~ 81 (414)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 261
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=122.66 Aligned_cols=75 Identities=24% Similarity=0.528 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|+ |+||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 568999999999999999999999999999999998 4699999999999999997 667899999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86554
No 262
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=4.3e-16 Score=127.83 Aligned_cols=77 Identities=19% Similarity=0.480 Sum_probs=70.7
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||+++|+++|+++|++||.|++|+|+ ++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467899999999999999999999999999999998 6899999999999999999988 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++..+
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 887654
No 263
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=127.72 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceeee
Q 015040 3 SDEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~v 77 (414)
..+++|||+|||+ ++||++|+++|++||+|++|+|++++ +||||+|+++++|++||+ + ...|.+++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999998764 699999999999999998 3 24599999999
Q ss_pred eechhhhh
Q 015040 78 KRALSREE 85 (414)
Q Consensus 78 ~~a~~~~~ 85 (414)
.++...+.
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 264
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=129.55 Aligned_cols=80 Identities=28% Similarity=0.567 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++. ++++||||+|.++++|++|++ +.+.|++++|.|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999999999853 489999999999999999998 67899999999999
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 265
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=4.5e-16 Score=137.37 Aligned_cols=84 Identities=15% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++++++|+++|++||+|+.|.|+.++.|+++++||||+|.++++|++||+ +.+.|.+++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999999999999999999999999999998 678899999999998
Q ss_pred hhhhhh
Q 015040 81 LSREEQ 86 (414)
Q Consensus 81 ~~~~~~ 86 (414)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 865543
No 266
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=126.83 Aligned_cols=80 Identities=33% Similarity=0.511 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++| .+|+|+.++.++++++||||+|+++++|++||+ +.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 467999999999999999999999976 578899998899999999999999999999998 778999999999999
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++.+
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87553
No 267
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-17 Score=132.11 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
...++|||+|||+++++++|+++|++||+|++ .++.++.++++++||||+|.++++|++||+ +.+.|.++.|+|+++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999988 677777788999999999999999999999 6689999999999987
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 268
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-16 Score=126.55 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC-----cee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG-----RPV 75 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g-----r~l 75 (414)
...++|||+|||++++|++|+++|++||+|++|+|+.+ +||||+|+++++|++||+ +.++|++ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999886 799999999999999999 5568888 999
Q ss_pred eeeechhhh
Q 015040 76 EAKRALSRE 84 (414)
Q Consensus 76 ~v~~a~~~~ 84 (414)
+|+++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999988754
No 269
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=4.7e-16 Score=123.04 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=64.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+..+|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++. .....+.+++|+|++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcC
Confidence 36789999999999999999999999999999999874 6899999999999998532 22346789999999999
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
|+..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8764
No 270
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.6e-16 Score=137.61 Aligned_cols=83 Identities=17% Similarity=0.323 Sum_probs=77.5
Q ss_pred ccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 105 YFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
..+.++|||.|||+++++++|+++|++||+|++|.|+.++ ++++++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999998 699999999999
Q ss_pred cCCCC
Q 015040 184 ALPKD 188 (414)
Q Consensus 184 a~p~~ 188 (414)
+.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 271
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=120.49 Aligned_cols=71 Identities=13% Similarity=0.395 Sum_probs=65.1
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCc-ee
Q 015040 5 EGKLFIGGIAWDT------TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGR-PV 75 (414)
Q Consensus 5 ~~tLfVgnLp~~~------tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr-~l 75 (414)
+++|||+|||+++ ++++|+++|++||+|++|.|+ +.++++++||||+|.++++|++||+ +.+.|+++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 4678999999999999999999999 66789998 88
Q ss_pred ee
Q 015040 76 EA 77 (414)
Q Consensus 76 ~v 77 (414)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 272
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=120.36 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=70.4
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||.|| ++|+++|+++|++||+|++|+|. ++++||||+|+++++|++||+.|+ ..|.+++|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999996 89999999999999999999995 458899999999999999999988 6999999999999
Q ss_pred CCCCCCC
Q 015040 185 LPKDASG 191 (414)
Q Consensus 185 ~p~~~~~ 191 (414)
+++....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8876544
No 273
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=121.42 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=70.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||+|||+++|+++|+++|++||+|++| +.++.+++ ||||+|+++++|++||+ ++ +.|++++|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 66666655 99999999999999999 77 79999999999988
Q ss_pred CCCCCC
Q 015040 186 PKDASG 191 (414)
Q Consensus 186 p~~~~~ 191 (414)
++....
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 766543
No 274
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=8.5e-16 Score=141.01 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=76.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.++ ..+.++.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999998 69999999999987
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
+..
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 643
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=129.94 Aligned_cols=79 Identities=13% Similarity=0.327 Sum_probs=71.9
Q ss_pred ccceeEecCCCCCCCHHHHH----HHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFR----QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
+.++|||+|||+.+++++|+ ++|++||+|++|.|.+ ++++||||||+|++.++|++||+.++ ..|.+++|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 56899999999999999876 6999999999998863 57789999999999999999999999 6999999999
Q ss_pred EecCCCC
Q 015040 182 KRALPKD 188 (414)
Q Consensus 182 ~~a~p~~ 188 (414)
++++++.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998765
No 276
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.6e-16 Score=125.22 Aligned_cols=78 Identities=21% Similarity=0.454 Sum_probs=70.1
Q ss_pred cccceeEecCCCC-CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
.+.++|||+|||+ ++|+++|+++|++||.|++|+|. ++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3678999999998 99999999999999999999995 7899999999999999999988 689999999999
Q ss_pred cCCCCCCC
Q 015040 184 ALPKDASG 191 (414)
Q Consensus 184 a~p~~~~~ 191 (414)
++++....
T Consensus 80 a~~~~~~~ 87 (96)
T 2kvi_A 80 SSSNARPQ 87 (96)
T ss_dssp EECCCC--
T ss_pred cCcCCCCC
Confidence 98766543
No 277
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=126.16 Aligned_cols=79 Identities=20% Similarity=0.457 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||++++|++|+++|++|++| +|+.+ .++++++||||+|.++++|++||+ +.+.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3568999999999999999999999999876 55665 678999999999999999999999 66789999999999
Q ss_pred chhhh
Q 015040 80 ALSRE 84 (414)
Q Consensus 80 a~~~~ 84 (414)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 88654
No 278
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-17 Score=136.92 Aligned_cols=85 Identities=26% Similarity=0.527 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQ--------VVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID 71 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~--------v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~ 71 (414)
+.+.++|||+|||+++++++|+++|++||+|++ |+|+.++.++++++||||+|.++++|++||+ +.+.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 567899999999999999999999999999999 9999998899999999999999999999998 678999
Q ss_pred Cceeeeeechhhhhh
Q 015040 72 GRPVEAKRALSREEQ 86 (414)
Q Consensus 72 gr~l~v~~a~~~~~~ 86 (414)
+++|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876544
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=122.88 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=71.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeee-EEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDV-VVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++|||.|||+++|+++|+++|++||+|++| .|+.++.++ .|||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999999 488887654 39999999999999999888 7999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
+|++.
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98853
No 280
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.5e-15 Score=122.00 Aligned_cols=75 Identities=21% Similarity=0.500 Sum_probs=69.5
Q ss_pred cccceeEecCCCC-CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEe
Q 015040 106 FKTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKR 183 (414)
Q Consensus 106 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~ 183 (414)
.+.++|||+|||+ ++++++|+++|++||.|++|+|. ++||||+|+++++|++||+.++ ..|.+++|+|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3678999999998 99999999999999999999994 7899999999999999999888 689999999999
Q ss_pred cCCCC
Q 015040 184 ALPKD 188 (414)
Q Consensus 184 a~p~~ 188 (414)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 281
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=128.04 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--c--CCCCCCceeee
Q 015040 3 SDEGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--D--KHTIDGRPVEA 77 (414)
Q Consensus 3 ~~~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~--~~~i~gr~l~v 77 (414)
..+++|||+|||++ ++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ + ...|.+++|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 999999999999999999999853 5899999999999999998 2 35699999999
Q ss_pred eechhhhh
Q 015040 78 KRALSREE 85 (414)
Q Consensus 78 ~~a~~~~~ 85 (414)
.++..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99876543
No 282
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=123.18 Aligned_cols=75 Identities=17% Similarity=0.369 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC--Cceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID--GRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~--gr~l~v~ 78 (414)
...++|||+|||++++|++|+++|++||+|++|+|+++ ++||||+|+++++|++||+ +.+.|+ +++|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35689999999999999999999999999999999864 5799999999999999998 677899 9999999
Q ss_pred echhh
Q 015040 79 RALSR 83 (414)
Q Consensus 79 ~a~~~ 83 (414)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98764
No 283
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-16 Score=124.85 Aligned_cols=78 Identities=31% Similarity=0.552 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceeeeeechh
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
..+++|||+|||++++|++|+++|++||+|++|+|+++ +|+||||+|+++++|++|+...+.+.+++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 56899999999999999999999999999999999864 6799999999999999877666677999999998876
Q ss_pred hhh
Q 015040 83 REE 85 (414)
Q Consensus 83 ~~~ 85 (414)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 284
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=7.7e-16 Score=124.87 Aligned_cols=78 Identities=19% Similarity=0.411 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999874 499999999999999998 677999999999999
Q ss_pred hhhhhhcc
Q 015040 81 LSREEQHN 88 (414)
Q Consensus 81 ~~~~~~~~ 88 (414)
.++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 87665443
No 285
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.5e-16 Score=124.34 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|++ +++||||+|.+.++|++||+ +.+.|+++.|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3578999999999999999999999999999999983 46899999999999999997 778999999999988
Q ss_pred hh
Q 015040 81 LS 82 (414)
Q Consensus 81 ~~ 82 (414)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 286
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.5e-15 Score=136.49 Aligned_cols=84 Identities=42% Similarity=0.770 Sum_probs=77.5
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.+.+.|.++.|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999996689999999999987
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
++..
T Consensus 91 ~~~~ 94 (196)
T 1l3k_A 91 SRED 94 (196)
T ss_dssp C---
T ss_pred Cccc
Confidence 7643
No 287
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=4.3e-16 Score=127.00 Aligned_cols=78 Identities=12% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCC------cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCc-e
Q 015040 4 DEGKLFIGGIAWDT------TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGR-P 74 (414)
Q Consensus 4 ~~~tLfVgnLp~~~------tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr-~ 74 (414)
..++|||+|||+++ ++++|+++|++||+|++|.|+ +.+++++|||||+|.++++|++||+ +.+.|+++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 4678999999999999999999999 66799998 9
Q ss_pred eeeeechhh
Q 015040 75 VEAKRALSR 83 (414)
Q Consensus 75 l~v~~a~~~ 83 (414)
|.|+++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988654
No 288
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=125.74 Aligned_cols=77 Identities=23% Similarity=0.487 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999986 5799999999999999997 778999999999998
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87553
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=121.35 Aligned_cols=77 Identities=27% Similarity=0.521 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeech
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~ 81 (414)
...++|||+|||++++|++|+++|++||+|++| +.++.+++ ||||+|.++++|++||+ +.+.|++++|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 457899999999999999999999999999987 55555655 99999999999999999 6679999999999876
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
+++
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=4.3e-16 Score=124.65 Aligned_cols=81 Identities=19% Similarity=0.409 Sum_probs=73.8
Q ss_pred cccceeEecCCCCCCCHHHHH----HHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFR----QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
.+.++|||.|||+++++++|+ ++|++||.|++|.|+. ++++++||||+|+++++|++|++.++ ..|.+++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 367899999999999999999 9999999999999974 46678999999999999999999988 699999999
Q ss_pred EEecCCCCC
Q 015040 181 VKRALPKDA 189 (414)
Q Consensus 181 V~~a~p~~~ 189 (414)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988754
No 291
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-16 Score=130.66 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||+++|+++|+++|++||.|++|.+..+..++++++||||+|.++++|++||+ +.+.|.+++|.|+++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 56899999999999999999999999998544333333378899999999999999999998 6789999999999998
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
++..
T Consensus 104 ~~~~ 107 (115)
T 2cpx_A 104 NKKQ 107 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=136.45 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||+++++++|+++|++||+|++|.|+.++ ++++++||||+|.++++|++||+ +.+.|++++|+|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999999998 89999999999999999999999 6779999999999988
Q ss_pred hhhhh
Q 015040 82 SREEQ 86 (414)
Q Consensus 82 ~~~~~ 86 (414)
.....
T Consensus 166 ~~~~~ 170 (177)
T 2f3j_A 166 SQIDL 170 (177)
T ss_dssp SGGGG
T ss_pred CCCCC
Confidence 65543
No 293
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-16 Score=121.32 Aligned_cols=72 Identities=14% Similarity=0.332 Sum_probs=66.1
Q ss_pred ceeEecCCCCCC------CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe-EEE
Q 015040 109 KKIFVGGLPPTL------TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK-LVE 180 (414)
Q Consensus 109 ~~lfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr-~i~ 180 (414)
++|||+|||.++ |+++|+++|++||+|++|+|+ +++++++|||||+|+++++|++||+.++ ..|.++ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 4678999999999999999999999998 699998 887
Q ss_pred EE
Q 015040 181 VK 182 (414)
Q Consensus 181 V~ 182 (414)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 294
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=126.38 Aligned_cols=77 Identities=30% Similarity=0.588 Sum_probs=68.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCC---CCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNT---QRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~ 183 (414)
..++|||+|||+++|+++|+++|++||+|+ +.++.++.+ ++++|||||+|+++++|++||+.+ +.++++.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 568999999999999999999999999999 889888887 699999999999999999999988 346777776665
Q ss_pred cC
Q 015040 184 AL 185 (414)
Q Consensus 184 a~ 185 (414)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 295
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=122.75 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCC--CCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKH--TIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~--~i~gr~l~v~ 78 (414)
..+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++|++ +.. .|.+++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 35789999999999999999999999999999999864 5799999999999999998 333 4789999999
Q ss_pred echhhh
Q 015040 79 RALSRE 84 (414)
Q Consensus 79 ~a~~~~ 84 (414)
+++.++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987643
No 296
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.1e-16 Score=123.75 Aligned_cols=76 Identities=25% Similarity=0.570 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||+ +.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999864 5799999999999999997 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8654
No 297
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=9.9e-16 Score=126.63 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=72.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++|+++|+++|++||.|++|.|+.+. .+++||||+|.+.++|++||+.++ ..|.++.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 56899999999999999999999999999999999764 458999999999999999999888 79999999999998
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
++.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 754
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=128.13 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeee
Q 015040 4 DEGKLFIGGIAWDTTEGTLR----DYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~----e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v 77 (414)
..++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.++++|++||+ +...|.+++|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46899999999999999876 6999999999998754 57889999999999999999998 678999999999
Q ss_pred eechhhhhhcc
Q 015040 78 KRALSREEQHN 88 (414)
Q Consensus 78 ~~a~~~~~~~~ 88 (414)
+++..+.....
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99987665544
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=3e-15 Score=131.06 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=71.6
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC--eEEEEEe
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG--KLVEVKR 183 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g--r~i~V~~ 183 (414)
...+|||.||++.+|+++|+++|++||+|++|+|+.++ +++||||+|+++++|++|++.|+ .+|.+ ++|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 45789999999999999999999999999999997543 57899999999999999999999 68865 9999999
Q ss_pred cCCCCCC
Q 015040 184 ALPKDAS 190 (414)
Q Consensus 184 a~p~~~~ 190 (414)
++++...
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9987643
No 300
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=121.92 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|+ +.|+.+ ++++||||+|.++++|++||+ +.+.|+++.|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999997 666654 578999999999999999997 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 301
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=2.7e-15 Score=130.86 Aligned_cols=82 Identities=23% Similarity=0.474 Sum_probs=77.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRALP 186 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~p 186 (414)
.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++ ..|.+++|+|+++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999999999999999999999999999999888 699999999999987
Q ss_pred CCC
Q 015040 187 KDA 189 (414)
Q Consensus 187 ~~~ 189 (414)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=117.54 Aligned_cols=74 Identities=22% Similarity=0.491 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH---cCCCCCCceeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ---DKHTIDGRPVEAK 78 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~---~~~~i~gr~l~v~ 78 (414)
+...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++||+ +.+.+++++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999974 5799999999999999998 4568999999998
Q ss_pred ech
Q 015040 79 RAL 81 (414)
Q Consensus 79 ~a~ 81 (414)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 864
No 303
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=120.35 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
..+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|+++++|++||+ +.+.|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356899999999999999999999999999999999843 99999999999999997 77899999999999
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 986543
No 304
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.7e-15 Score=119.25 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=68.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||+|||+++++++|+++|++| +|++|+|. ++++||||+|+++++|++||+.++ .+|.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46889999999999999999999999 99999984 568999999999999999999998 69999999999986
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 305
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2.3e-15 Score=131.74 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=78.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+.++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++ ..|.+++|+|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46889999999999999999999999999999999999999999999999999999999999888 69999999999998
Q ss_pred CCCC
Q 015040 186 PKDA 189 (414)
Q Consensus 186 p~~~ 189 (414)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.18 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=69.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
..++|||.|||+++|+++|+++|++||.|++|.|++ .++||||+|++.++|++||+.|+ ..|.+++|.|++++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999874 47899999999999999999998 69999999999987
Q ss_pred CCC
Q 015040 186 PKD 188 (414)
Q Consensus 186 p~~ 188 (414)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=119.71 Aligned_cols=74 Identities=19% Similarity=0.418 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999999999853 99999999999999998 678999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 308
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=125.01 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++++++|+++|++||+|++|.|++ +++||||+|.++++|++||+ +.+.|.+++|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999875 45799999999999999998 67899999999999
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 309
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.2e-15 Score=123.57 Aligned_cols=75 Identities=24% Similarity=0.480 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||++++|++|+++|++||+|++|.|+ ++||||+|.++++|++||+ +.+.|+++.|.|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999999999998 5799999999999999998 77899999999999
Q ss_pred chhhh
Q 015040 80 ALSRE 84 (414)
Q Consensus 80 a~~~~ 84 (414)
+.++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87654
No 310
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=1.1e-15 Score=126.09 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
...++|||+|||+++++++|+++|++|| +|+.|.|+.+ +++|||||+|+++++|++||+ +..+|++++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999 8999988642 478999999999999999998 67799999999998
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8644
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.7e-15 Score=120.11 Aligned_cols=75 Identities=21% Similarity=0.484 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
.+.++|||+|||+ ++++++|+++|++||+|++|.|. ++||||+|.++++|++||+ +.+.+.+++|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4688999999998 99999999999999999999984 5799999999999999998 67799999999999
Q ss_pred chhhhh
Q 015040 80 ALSREE 85 (414)
Q Consensus 80 a~~~~~ 85 (414)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876543
No 312
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=121.05 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQV-VIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v-~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..++|||+|||+++++++|+++|++||+|++| .|+.++.++ .|||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 588876553 39999999999999998 778999999999998
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=131.19 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=72.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeE--Ee---ecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVV--VM---YDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~--i~---~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
+.++|||+|||+++|+++|+++|++||.|+.|. ++ ....++++++||||+|.+.++|++||+.++ ..|.+++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 578999999999999999999999999998752 12 223568899999999999999999999988 699999999
Q ss_pred EEecCCCCCC
Q 015040 181 VKRALPKDAS 190 (414)
Q Consensus 181 V~~a~p~~~~ 190 (414)
|++++++...
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 314
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=2.5e-15 Score=136.08 Aligned_cols=79 Identities=14% Similarity=0.308 Sum_probs=74.3
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALP 186 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p 186 (414)
..++|||.|||+++|+++|+++|++||+|+.|+|++++. ++++|||||+|+++++|++||+.+++.|++++|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 468999999999999999999999999999999999875 8899999999999999999999888899999999998765
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=8.4e-15 Score=123.59 Aligned_cols=79 Identities=13% Similarity=0.213 Sum_probs=71.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHcC-CccCC--eEEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGF-GFITFETEDAVDNVLQKVF-HELNG--KLVEVK 182 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFVeF~~~e~a~~Al~~~~-~~i~g--r~i~V~ 182 (414)
+...|||.||++.+|+++|+++|++||+|++|+|+.+ .++| |||+|++.++|++|++.|+ .+|.+ ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4578899999999999999999999999999998864 3678 9999999999999999999 78888 999999
Q ss_pred ecCCCCCC
Q 015040 183 RALPKDAS 190 (414)
Q Consensus 183 ~a~p~~~~ 190 (414)
+++++...
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99987643
No 316
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=3e-15 Score=122.82 Aligned_cols=73 Identities=16% Similarity=0.421 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 4 DEGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 4 ~~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
..++|||+|||++ ++|++|+++|++||+|++|+| +++||||+|+++++|++||+ +.+.|++++|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3589999999999 999999999999999999998 46799999999999999997 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.+..
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=9.8e-16 Score=122.56 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLR----DYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~----e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
..+++|||+|||+++++++|+ ++|++||+|++|.|++ ++++++||||+|.++++|++|++ +.+.|.+++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467999999999999999999 9999999999999874 46778999999999999999998 77899999999
Q ss_pred eeechhhhhh
Q 015040 77 AKRALSREEQ 86 (414)
Q Consensus 77 v~~a~~~~~~ 86 (414)
|+++.++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9998876543
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=120.84 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cC-CCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGD-VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DK-HTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~-V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~-~~i~gr~l~v~ 78 (414)
...++|||+|||+++||++|+++|++||+ |+.+.|+ +++||||+|.++++|++||+ +. +.|++++|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666653 35799999999999999998 66 78999999999
Q ss_pred echhhhh
Q 015040 79 RALSREE 85 (414)
Q Consensus 79 ~a~~~~~ 85 (414)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9986543
No 319
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.3e-15 Score=118.93 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF--GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~--G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
...++|||+|||+++++++|+++|++| +.|++|+++ ++||||+|.++++|++||+ +.+.|++++|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 899998875 4699999999999999998 6779999999999
Q ss_pred echhhh
Q 015040 79 RALSRE 84 (414)
Q Consensus 79 ~a~~~~ 84 (414)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 987654
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=2.2e-14 Score=120.33 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=68.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceE-EEEEeCCHHHHHHHHHHcC-CccCC--eEEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGF-GFITFETEDAVDNVLQKVF-HELNG--KLVEVK 182 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFVeF~~~e~a~~Al~~~~-~~i~g--r~i~V~ 182 (414)
....|||.||++.+|+++|+++|++||.|++|+|+.. +|| |||+|+++++|++|++.|+ .+|.+ ++|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999999752 276 9999999999999999999 68877 699999
Q ss_pred ecCCCCC
Q 015040 183 RALPKDA 189 (414)
Q Consensus 183 ~a~p~~~ 189 (414)
+|+++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998864
No 321
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=7.5e-15 Score=117.91 Aligned_cols=73 Identities=22% Similarity=0.482 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 3 SDEGKLFIGGIAW-DTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 3 ~~~~tLfVgnLp~-~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
.+.++|||+|||+ ++++++|+++|++||+|++|+|. ++||||+|.++++|++||+ +...|++++|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5689999999998 99999999999999999999983 5799999999999999999 66788999999998
Q ss_pred chhh
Q 015040 80 ALSR 83 (414)
Q Consensus 80 a~~~ 83 (414)
+..+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 322
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=3e-15 Score=124.05 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=60.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
...++|||+|||++++|++|+++|++||+|++|.|+.+ +||||+|+++++|++||+ +.++|++++|+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 35689999999999999999999999999999999875 799999999999999999 6789999984443
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=2.5e-15 Score=118.26 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++| +|++|+|. ++++||||+|.++++|++||+ +...+++++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999984 568999999999999999998 667899999999987
Q ss_pred hh
Q 015040 81 LS 82 (414)
Q Consensus 81 ~~ 82 (414)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.9e-15 Score=124.08 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=68.7
Q ss_pred ceeEecCC----CCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----H-H---HHHHHHH--HcC-Cc
Q 015040 109 KKIFVGGL----PPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----E-D---AVDNVLQ--KVF-HE 173 (414)
Q Consensus 109 ~~lfV~nL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~-e---~a~~Al~--~~~-~~ 173 (414)
++|||.|| |+.++|++|+++|++||+|++|.++.|++|++++|||||+|.+ + + +|.+|++ +++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 3 2 2888888 556 69
Q ss_pred cCCeEEEEEecC
Q 015040 174 LNGKLVEVKRAL 185 (414)
Q Consensus 174 i~gr~i~V~~a~ 185 (414)
|++++|+|+..+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.3e-15 Score=121.58 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=68.4
Q ss_pred ccceeEe--cCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc-----CCeE
Q 015040 107 KTKKIFV--GGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL-----NGKL 178 (414)
Q Consensus 107 ~~~~lfV--~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i-----~gr~ 178 (414)
++++||| +||++++||++|+++|++||+|++|.|+.+ |+||||+|+++++|++|++.|+ ++| .+++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5688999 679999999999999999999999988743 7899999999999999999999 677 6899
Q ss_pred EEEEecCCCCC
Q 015040 179 VEVKRALPKDA 189 (414)
Q Consensus 179 i~V~~a~p~~~ 189 (414)
|.|++++..+.
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999876543
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-15 Score=121.38 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeee
Q 015040 2 ESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKR 79 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~ 79 (414)
+.+.++|||+|||+++++++|+++|++|++|..| +.++++++||||+|.++++|++||+ +.+.|++++|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999887765 3467899999999999999999999 55689999999999
Q ss_pred chhhh
Q 015040 80 ALSRE 84 (414)
Q Consensus 80 a~~~~ 84 (414)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87643
No 327
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=2.9e-15 Score=131.07 Aligned_cols=80 Identities=36% Similarity=0.699 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
..++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.++++|++||+ +.+.|.+++|+|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35799999999999999999999999999999999999899999999999999999999999 56799999999999876
Q ss_pred h
Q 015040 83 R 83 (414)
Q Consensus 83 ~ 83 (414)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 328
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=5.5e-15 Score=128.11 Aligned_cols=76 Identities=25% Similarity=0.473 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||++++|++|+++|++||+|++|+|+++ +++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35789999999999999999999999999999999876 57899999999999999998 678999999999998
Q ss_pred hhh
Q 015040 81 LSR 83 (414)
Q Consensus 81 ~~~ 83 (414)
.++
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 329
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.2e-14 Score=132.64 Aligned_cols=81 Identities=17% Similarity=0.509 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999 7789999999999988
Q ss_pred hhh
Q 015040 82 SRE 84 (414)
Q Consensus 82 ~~~ 84 (414)
++.
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 330
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.3e-14 Score=126.39 Aligned_cols=79 Identities=29% Similarity=0.546 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||.|||+++++++|+++|++||+|++|.|+.++.+++++++|||+|.++++|++||+ +.+.|++++|+|+++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999998 778999999999987
Q ss_pred h
Q 015040 81 L 81 (414)
Q Consensus 81 ~ 81 (414)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.5e-14 Score=126.64 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCC--ceeeeeec
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG--RPVEAKRA 80 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g--r~l~v~~a 80 (414)
..+|||+||++++||++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++ +..+|.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456899999999999999999999999999998753 257899999999999999999 6678865 99999999
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 87643
No 332
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.9e-15 Score=123.46 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=67.5
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH----cCCC
Q 015040 6 GKLFIGGI----AWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD----PSV----LDQVLQ----DKHT 69 (414)
Q Consensus 6 ~tLfVgnL----p~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~----~e~----A~~Al~----~~~~ 69 (414)
.+|||+|| |+.++|++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+. +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788877 5679
Q ss_pred CCCceeeeeech
Q 015040 70 IDGRPVEAKRAL 81 (414)
Q Consensus 70 i~gr~l~v~~a~ 81 (414)
|++++|+|+...
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998644
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=8e-15 Score=148.79 Aligned_cols=82 Identities=28% Similarity=0.555 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||++||+++|+++|.+||+|+.|.|+.++.|+++++||||+|.++++|++||+ +.+.|.+++|.|+++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999999997 6789999999999988
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 334
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=7.9e-15 Score=114.73 Aligned_cols=71 Identities=27% Similarity=0.535 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCC
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF----G-------DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTI 70 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~----G-------~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i 70 (414)
.+.++|||+|||+++++++|+++|++| | +|++|+++++ ++||||+|.++++|++||. +.+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 567999999999999999999999999 8 8999998865 5899999999999999997 66789
Q ss_pred CCceeeeee
Q 015040 71 DGRPVEAKR 79 (414)
Q Consensus 71 ~gr~l~v~~ 79 (414)
++++|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999875
No 335
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=8.3e-15 Score=132.65 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCceeeeeechh
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRPVEAKRALS 82 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~l~v~~a~~ 82 (414)
+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|+++++|++||+ ..+.|++++|.|+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999986 58999999999999999999999 55789999999998765
Q ss_pred hh
Q 015040 83 RE 84 (414)
Q Consensus 83 ~~ 84 (414)
..
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.7e-14 Score=112.74 Aligned_cols=70 Identities=23% Similarity=0.548 Sum_probs=64.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhcc----C-------ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENY----G-------HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL 174 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i 174 (414)
+.++|||+|||+++++++|+++|++| | +|++|+|+++ ++||||+|+++++|++|| .++ ..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 57899999999999999999999999 8 8999999755 789999999999999999 877 799
Q ss_pred CCeEEEEEe
Q 015040 175 NGKLVEVKR 183 (414)
Q Consensus 175 ~gr~i~V~~ 183 (414)
.+++|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999985
No 337
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.7e-14 Score=120.78 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=69.2
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|| ++|+++|+++|++||+|++|.|+ ++++||||+|+++++|++||+.++ ..|.+++|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35789999996 69999999999999999999996 468899999999999999999988 6999999999999
Q ss_pred CCCCCC
Q 015040 185 LPKDAS 190 (414)
Q Consensus 185 ~p~~~~ 190 (414)
+++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 887543
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=3.6e-14 Score=115.75 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=71.3
Q ss_pred ccceeEecCCCC-----CCCHHHHHHHhhccCceeeeEEeecCCC-CCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEE
Q 015040 107 KTKKIFVGGLPP-----TLTEDGFRQYFENYGHVTDVVVMYDQNT-QRPRGFGFITFETEDAVDNVLQKVF-HELNGKLV 179 (414)
Q Consensus 107 ~~~~lfV~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i 179 (414)
++++|+|.||.. +.++++|+++|++||+|++|+|++++++ ++++||+||+|+++++|++|++.|+ ..|.+|+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999963 2478999999999999999999998764 6889999999999999999999999 79999999
Q ss_pred EEEecCC
Q 015040 180 EVKRALP 186 (414)
Q Consensus 180 ~V~~a~p 186 (414)
+|+++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=114.68 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.+.++|||+|| ++++++|+++|++||+|++|.|. ++++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999985 456899999999999999997 667899999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=2.1e-14 Score=126.21 Aligned_cols=78 Identities=26% Similarity=0.524 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~ 81 (414)
..++|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++|++ +.+.|++++|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36899999999999999999999999999999999998899999999999999999999998 7789999999999863
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=1.7e-14 Score=129.70 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456999999999999999999999999999999999998899999999999999999999998 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=2.8e-15 Score=128.87 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEE-----EecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCcee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVI-----MRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPV 75 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i-----~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l 75 (414)
..+++|||+|||+++|+++|+++|++||.|+.|.| ++.+.++++++||||+|.++++|++||+ +.+.|.++.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35789999999999999999999999999887411 1112468899999999999999999999 6779999999
Q ss_pred eeeechhhh
Q 015040 76 EAKRALSRE 84 (414)
Q Consensus 76 ~v~~a~~~~ 84 (414)
.|+++.+..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999987543
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=112.06 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=64.5
Q ss_pred ccce-eEecCCCCCCCHHH----HHHHhhcc-CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEE
Q 015040 107 KTKK-IFVGGLPPTLTEDG----FRQYFENY-GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLV 179 (414)
Q Consensus 107 ~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i 179 (414)
++.+ |||.|||+.+++++ |+++|++| |+|.+| ++ |+|||+|++.++|++|++.|+ .+|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 499998 22 899999999999999999999 79999999
Q ss_pred EEEecCCCCC
Q 015040 180 EVKRALPKDA 189 (414)
Q Consensus 180 ~V~~a~p~~~ 189 (414)
+|++|+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999988764
No 344
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=4e-14 Score=124.51 Aligned_cols=83 Identities=28% Similarity=0.484 Sum_probs=74.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCC--CCceEEEEEeCCHHHHHHHHHHcC-CccC---CeEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQ--RPRGFGFITFETEDAVDNVLQKVF-HELN---GKLVE 180 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg--~~rG~aFVeF~~~e~a~~Al~~~~-~~i~---gr~i~ 180 (414)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.++ ++++||||+|.++++|++||+.++ ..+. .++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 899999999999999999999888 3444 68888
Q ss_pred EEecCCCCC
Q 015040 181 VKRALPKDA 189 (414)
Q Consensus 181 V~~a~p~~~ 189 (414)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776543
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=1.3e-13 Score=112.40 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCC-----CCcHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHH--cCCCCCCc
Q 015040 2 ESDEGKLFIGGIAW-----DTTEGTLRDYFTRFGDVSQVVIMRDKTT-GRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGR 73 (414)
Q Consensus 2 e~~~~tLfVgnLp~-----~~tee~L~e~F~~~G~V~~v~i~~~~~t-g~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr 73 (414)
...+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|++ +.+.++++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999952 2378999999999999999999998754 6899999999999999999998 77899999
Q ss_pred eeeeeechhhhhhc
Q 015040 74 PVEAKRALSREEQH 87 (414)
Q Consensus 74 ~l~v~~a~~~~~~~ 87 (414)
+|.|.++....-..
T Consensus 85 ~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 85 VVKACFYNLDKFRV 98 (105)
T ss_dssp ECEEEECCHHHHHT
T ss_pred EEEEEEcCHHHhhh
Confidence 99999998755443
No 346
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=4.7e-14 Score=128.89 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=70.9
Q ss_pred ccceeEecCCC-CCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLP-PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+.++|||+||| +.+|+++|+++|++||.|++|+|+++ .+|||||+|+++++|++||+.|+ .+|.+++|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999865 37899999999999999999998 7999999999998
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7554
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=7.9e-14 Score=117.63 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=66.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHH--cCCCCCC--ceeeeeec
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGF-GFVVFSDPSVLDQVLQ--DKHTIDG--RPVEAKRA 80 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~-aFV~F~~~e~A~~Al~--~~~~i~g--r~l~v~~a 80 (414)
-+|||+||++.+||++|+++|++||+|++|+|+.+. ++| |||+|.++++|++|++ +.+.|.+ ++|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 457799999999999999999999999999988642 578 9999999999999999 7788888 89999999
Q ss_pred hhhhh
Q 015040 81 LSREE 85 (414)
Q Consensus 81 ~~~~~ 85 (414)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87643
No 348
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-14 Score=118.32 Aligned_cols=74 Identities=9% Similarity=0.196 Sum_probs=62.1
Q ss_pred CCCCEEEE--cCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC-----CCc
Q 015040 3 SDEGKLFI--GGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI-----DGR 73 (414)
Q Consensus 3 ~~~~tLfV--gnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i-----~gr 73 (414)
..+++||| +||+++++|++|+++|++||+|++|.|+.+ |+||||+|+++++|++|++ +.++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788999 779999999999999999999999988643 6899999999999999998 44555 466
Q ss_pred eeeeeechh
Q 015040 74 PVEAKRALS 82 (414)
Q Consensus 74 ~l~v~~a~~ 82 (414)
+|.|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 777776653
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=6.6e-14 Score=130.32 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=68.0
Q ss_pred ccceeEecCCCCCC---------CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc--
Q 015040 107 KTKKIFVGGLPPTL---------TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL-- 174 (414)
Q Consensus 107 ~~~~lfV~nLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i-- 174 (414)
..++|||+||+..+ +|++|+++|++||+|++|+|+.+ |+||||+|+++++|++|+++|+ ..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 57899999999998 79999999999999999999854 7899999999999999999999 577
Q ss_pred ----------CCeEEEEEecCCCC
Q 015040 175 ----------NGKLVEVKRALPKD 188 (414)
Q Consensus 175 ----------~gr~i~V~~a~p~~ 188 (414)
.+++|.|+||+++.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC---
T ss_pred cccccccccCCCCEEEEEEccCCC
Confidence 89999999998754
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.7e-13 Score=110.84 Aligned_cols=81 Identities=11% Similarity=0.318 Sum_probs=69.5
Q ss_pred cccceeEecCCCCCCC-----------HHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Cc
Q 015040 106 FKTKKIFVGGLPPTLT-----------EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HE 173 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~ 173 (414)
.++++|+|.||....+ +++|+++|++||+|++|.| .++. ++|||||+|+++++|++||+.|+ ..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3678999999954332 5899999999999999966 5543 79999999999999999999999 69
Q ss_pred cCCeEEEEEecCCCCCC
Q 015040 174 LNGKLVEVKRALPKDAS 190 (414)
Q Consensus 174 i~gr~i~V~~a~p~~~~ 190 (414)
|++++|+|+++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999887643
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=2e-13 Score=114.53 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHH--cCCCCCC--ceeeeeech
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGF-GFVVFSDPSVLDQVLQ--DKHTIDG--RPVEAKRAL 81 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~-aFV~F~~~e~A~~Al~--~~~~i~g--r~l~v~~a~ 81 (414)
.|||+||++.+++++|+++|++||+|++|+|+. + +|| |||+|+++++|++|++ +..+|.+ ++|+|++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 467999999999999999999999999999975 2 276 9999999999999999 7788887 689999988
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=9.9e-14 Score=116.04 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
...++|||+|| ++||++|+++|++||+|++|.|. ++++||||+|.++++|++||+ +.+.|.+++|.|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35789999996 79999999999999999999986 456899999999999999997 778999999999998
Q ss_pred hhhh
Q 015040 81 LSRE 84 (414)
Q Consensus 81 ~~~~ 84 (414)
.++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8654
No 353
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=108.67 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=63.4
Q ss_pred CCCE-EEEcCCCCCCcHHH----HHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCcee
Q 015040 4 DEGK-LFIGGIAWDTTEGT----LRDYFTRF-GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPV 75 (414)
Q Consensus 4 ~~~t-LfVgnLp~~~tee~----L~e~F~~~-G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l 75 (414)
.+.| |||.|||+++++++ |+++|++| |+|++| |+ |+|||+|.+.++|++|++ +..+|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599998 22 899999999999999998 7789999999
Q ss_pred eeeechhhhhh
Q 015040 76 EAKRALSREEQ 86 (414)
Q Consensus 76 ~v~~a~~~~~~ 86 (414)
+|.+++.+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876543
No 354
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=1.8e-13 Score=130.33 Aligned_cols=81 Identities=19% Similarity=0.411 Sum_probs=73.9
Q ss_pred cccceeEecCCCCCCCHHHHH----HHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 106 FKTKKIFVGGLPPTLTEDGFR----QYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
.+.++|||+|||+++|+++|+ ++|++||.|++|+|++ ++++|+||||+|+++++|++||+.++ ..|.++.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467899999999999999977 8999999999999986 57789999999999999999999988 699999999
Q ss_pred EEecCCCCC
Q 015040 181 VKRALPKDA 189 (414)
Q Consensus 181 V~~a~p~~~ 189 (414)
|++++++..
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999977653
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=1.8e-13 Score=126.88 Aligned_cols=77 Identities=17% Similarity=0.396 Sum_probs=71.7
Q ss_pred ccceeEecCCCC-CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
+.++|||.|||+ ++++++|+++|++||.|++|+|++++ ++||||+|.++++|++||+.++ ..|.+++|+|+++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 578999999999 99999999999999999999999875 7899999999999999999888 6999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 108 ~~~~ 111 (229)
T 2adc_A 108 KHQN 111 (229)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 8764
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=105.57 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecCCCCCCC
Q 015040 118 PTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRALPKDASG 191 (414)
Q Consensus 118 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~p~~~~~ 191 (414)
.+++|++|+++|++||+|++|+|+ .+++|||||+|+++++|++||+.+ +.+.+++|+|++++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 468999999999999999999998 367999999999999999999984 45789999999998876544
No 357
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=1e-13 Score=122.39 Aligned_cols=82 Identities=18% Similarity=0.400 Sum_probs=72.6
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||.++|+++|+++|++|+.|.. .++.+..++++++||||+|.++++|++||+ ++ ..|.+++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 36799999999999999999999999999877 455566778899999999999999999996 66 7999999999999
Q ss_pred CCCCC
Q 015040 185 LPKDA 189 (414)
Q Consensus 185 ~p~~~ 189 (414)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 87653
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.7e-13 Score=125.28 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCC---------cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC
Q 015040 2 ESDEGKLFIGGIAWDT---------TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI 70 (414)
Q Consensus 2 e~~~~tLfVgnLp~~~---------tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i 70 (414)
+.+.++|||+||++++ +|++|+++|++||+|++|+|+.+ |+||||+|.+.++|++|++ +...|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3568999999999998 79999999999999999999864 6899999999999999998 55677
Q ss_pred ------------CCceeeeeechhhhhh
Q 015040 71 ------------DGRPVEAKRALSREEQ 86 (414)
Q Consensus 71 ------------~gr~l~v~~a~~~~~~ 86 (414)
.++.|.|+++......
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=3.7e-13 Score=109.68 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred ccceeEecCC--CCCCC--------HHHHHHHhhccCceeeeEEeecCCC--CCCceEEEEEeCCHHHHHHHHHHcC-Cc
Q 015040 107 KTKKIFVGGL--PPTLT--------EDGFRQYFENYGHVTDVVVMYDQNT--QRPRGFGFITFETEDAVDNVLQKVF-HE 173 (414)
Q Consensus 107 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~t--g~~rG~aFVeF~~~e~a~~Al~~~~-~~ 173 (414)
+++.|.|.|+ |.++. ++||+++|++||+|++|+|++++.+ .+++|++||+|+++++|++|++.|+ ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 44443 3689999999999999999998865 3689999999999999999999999 79
Q ss_pred cCCeEEEEEecCC
Q 015040 174 LNGKLVEVKRALP 186 (414)
Q Consensus 174 i~gr~i~V~~a~p 186 (414)
|.+|+|+|+++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=3.1e-13 Score=121.83 Aligned_cols=77 Identities=17% Similarity=0.396 Sum_probs=71.0
Q ss_pred ccceeEecCCCC-CCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 107 KTKKIFVGGLPP-TLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 107 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
..++|||.|||+ ++++++|+++|++||.|++|+|++++ ++||||+|.++++|++||+.++ ..|.+++|+|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999999775 7899999999999999999888 6999999999999
Q ss_pred CCCC
Q 015040 185 LPKD 188 (414)
Q Consensus 185 ~p~~ 188 (414)
+++.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8664
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-12 Score=104.11 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCEEEEcCCC-------CCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCCceee
Q 015040 4 DEGKLFIGGIA-------WDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRPVE 76 (414)
Q Consensus 4 ~~~tLfVgnLp-------~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~ 76 (414)
..++|-|.-.. .+++|++|+++|++||+|++|.|+. ++||||||+|+++++|++||+..+.+.+++|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~ 83 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLK 83 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEE
Confidence 45677776554 4589999999999999999999983 67899999999999999999987888999999
Q ss_pred eeechhhh
Q 015040 77 AKRALSRE 84 (414)
Q Consensus 77 v~~a~~~~ 84 (414)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987654
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.9e-12 Score=122.37 Aligned_cols=76 Identities=30% Similarity=0.587 Sum_probs=70.0
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a 184 (414)
.+.++|||+|||+++|+++|+++|++||.|++|+|.++ ++||||+|.++++|++||+.++ ..|.++.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 46789999999999999999999999999999999643 7899999999999999999888 7999999999998
Q ss_pred CCC
Q 015040 185 LPK 187 (414)
Q Consensus 185 ~p~ 187 (414)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 763
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-12 Score=106.74 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCCCCC-----------cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCC
Q 015040 3 SDEGKLFIGGIAWDT-----------TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHT 69 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~-----------tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~ 69 (414)
..+++|+|.||.... ++++|+++|++||+|++|.| .++ .++|||||+|.++++|++||+ +.+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999994332 26899999999999999966 443 379999999999999999998 6678
Q ss_pred CCCceeeeeechhhh
Q 015040 70 IDGRPVEAKRALSRE 84 (414)
Q Consensus 70 i~gr~l~v~~a~~~~ 84 (414)
|++++|.|+++.++.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987654
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=1.7e-12 Score=107.90 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=69.3
Q ss_pred ccceeEecCCCC--C---CCHHHHHHHhhccCceeeeEEeecCC----CCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 107 KTKKIFVGGLPP--T---LTEDGFRQYFENYGHVTDVVVMYDQN----TQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 107 ~~~~lfV~nLp~--~---~te~~L~~~F~~~G~I~~v~i~~d~~----tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
++++|+|.|+-. + ..++||+++|++||+|++|+|++++. +.+++|++||+|+++++|++|++.|+ ..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 568899999832 2 24789999999999999999999875 45678999999999999999999999 79999
Q ss_pred eEEEEEecCC
Q 015040 177 KLVEVKRALP 186 (414)
Q Consensus 177 r~i~V~~a~p 186 (414)
|+|+|+++.+
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=3.6e-12 Score=105.98 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=71.4
Q ss_pred CCCEEEEcCC--CCCC---cHHHHHHHhhccCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHH--cCCCCCC
Q 015040 4 DEGKLFIGGI--AWDT---TEGTLRDYFTRFGDVSQVVIMRDKT----TGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDG 72 (414)
Q Consensus 4 ~~~tLfVgnL--p~~~---tee~L~e~F~~~G~V~~v~i~~~~~----tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~g 72 (414)
.+++|+|.|| |.++ .+++|++.|++||+|++|+|++++. +.+++|++||+|+++++|++|++ +...+++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5889999999 3333 4789999999999999999999865 45788999999999999999999 7789999
Q ss_pred ceeeeeechhhhhh
Q 015040 73 RPVEAKRALSREEQ 86 (414)
Q Consensus 73 r~l~v~~a~~~~~~ 86 (414)
|+|.|.++....-.
T Consensus 99 R~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 99 RKVVAEVYDQERFD 112 (118)
T ss_dssp EECEEEEECHHHHH
T ss_pred cEEEEEEcChHhcc
Confidence 99999998765433
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=5.9e-13 Score=108.26 Aligned_cols=71 Identities=17% Similarity=0.375 Sum_probs=61.3
Q ss_pred ecCCCCCCCHHHHHHHh------------hccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEE
Q 015040 113 VGGLPPTLTEDGFRQYF------------ENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLV 179 (414)
Q Consensus 113 V~nLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i 179 (414)
+.+||+.+++++|+++| ++||+|++|+|++++. ++++|||||+|+++++|++|++.++ ..|.+|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777666555 9999999999998875 6899999999999999999999999 79999999
Q ss_pred EEEec
Q 015040 180 EVKRA 184 (414)
Q Consensus 180 ~V~~a 184 (414)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=3.8e-12 Score=103.62 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCCCEEEEcCC--CCCCc--------HHHHHHHhhccCCeeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHH--cCC
Q 015040 3 SDEGKLFIGGI--AWDTT--------EGTLRDYFTRFGDVSQVVIMRDKTT--GRPRGFGFVVFSDPSVLDQVLQ--DKH 68 (414)
Q Consensus 3 ~~~~tLfVgnL--p~~~t--------ee~L~e~F~~~G~V~~v~i~~~~~t--g~~kG~aFV~F~~~e~A~~Al~--~~~ 68 (414)
..++.|.|.|| |.++. +++|+++|++||+|++|+|++++.+ .+++|++||+|+++++|++|++ +.+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999998 44543 4799999999999999999998765 4689999999999999999998 778
Q ss_pred CCCCceeeeeechhhhhh
Q 015040 69 TIDGRPVEAKRALSREEQ 86 (414)
Q Consensus 69 ~i~gr~l~v~~a~~~~~~ 86 (414)
.+++|+|.|.++....-.
T Consensus 83 ~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp EETTEECEEEEECHHHHH
T ss_pred EeCCCEEEEEEeCHHHHh
Confidence 999999999998766543
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=2.8e-12 Score=104.28 Aligned_cols=69 Identities=13% Similarity=0.355 Sum_probs=58.4
Q ss_pred cCCCCCCcHHHHHHHh------------hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 11 GGIAWDTTEGTLRDYF------------TRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 11 gnLp~~~tee~L~e~F------------~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
.+||+++++++|+++| ++||+|++|+|++++. ++++|||||+|.++++|++|++ +.+.+++++|.
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 4455556677666655 9999999999998764 7899999999999999999998 77899999999
Q ss_pred eeec
Q 015040 77 AKRA 80 (414)
Q Consensus 77 v~~a 80 (414)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=3.3e-11 Score=117.86 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=62.5
Q ss_pred cccceeEecC--CCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-Ccc---CCe--
Q 015040 106 FKTKKIFVGG--LPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HEL---NGK-- 177 (414)
Q Consensus 106 ~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i---~gr-- 177 (414)
.++++|||+| |+..+||++|+++|++||+|++|+|.. .|+||||+|++.++|++||+.|+ .++ .++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3678999999 588999999999999999999988863 47899999999999999999999 544 244
Q ss_pred EEEEEecC
Q 015040 178 LVEVKRAL 185 (414)
Q Consensus 178 ~i~V~~a~ 185 (414)
+|.|.+++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 56667663
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=7.3e-11 Score=97.41 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=63.5
Q ss_pred ccceeEecCCCCCC----------CHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccC
Q 015040 107 KTKKIFVGGLPPTL----------TEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELN 175 (414)
Q Consensus 107 ~~~~lfV~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~ 175 (414)
++++|.|.|+=... .++||+++|++||.|++|.|.++. ++||+||+|+++++|++|++.|+ ..|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 56788888873221 235789999999999999997653 48999999999999999999999 7999
Q ss_pred CeEEEEEecC
Q 015040 176 GKLVEVKRAL 185 (414)
Q Consensus 176 gr~i~V~~a~ 185 (414)
+|+|+|+++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999975
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=1.1e-10 Score=114.26 Aligned_cols=62 Identities=8% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCCCEEEEcC--CCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCC
Q 015040 3 SDEGKLFIGG--IAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTI 70 (414)
Q Consensus 3 ~~~~tLfVgn--Lp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i 70 (414)
..+++|||+| |++++||++|+++|++||+|++|+|.. .|+||||+|++.++|++||+ +..++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4678999999 578999999999999999999987753 46899999999999999999 44444
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=3.4e-10 Score=93.92 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=67.1
Q ss_pred ccccceeEecCCCCC-CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC-HHHHHHHHHHcC---CccCCeEE
Q 015040 105 YFKTKKIFVGGLPPT-LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQKVF---HELNGKLV 179 (414)
Q Consensus 105 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~-~e~a~~Al~~~~---~~i~gr~i 179 (414)
..+.+.|+|.||+.+ +++++|+++|++|++|+.|.|+++.. .|||+|.+ +++|++|+++++ .+|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346789999999999 99999999999999999999998876 59999999 899999999985 48999988
Q ss_pred EEEecC
Q 015040 180 EVKRAL 185 (414)
Q Consensus 180 ~V~~a~ 185 (414)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887653
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.03 E-value=9.9e-10 Score=90.57 Aligned_cols=79 Identities=8% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCEEEEcCC--CCCC--------cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCC
Q 015040 4 DEGKLFIGGI--AWDT--------TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTID 71 (414)
Q Consensus 4 ~~~tLfVgnL--p~~~--------tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~ 71 (414)
.++.|.|.|| |.+. .+++|+++|++||+|++|.|.++. ++||+||+|+++++|++|++ +.+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5788999998 3321 246889999999999999997653 58999999999999999998 778999
Q ss_pred Cceeeeeechhhhhh
Q 015040 72 GRPVEAKRALSREEQ 86 (414)
Q Consensus 72 gr~l~v~~a~~~~~~ 86 (414)
++.|.|.++....-.
T Consensus 82 GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 82 GKMITAAYVPLPTYH 96 (114)
T ss_dssp TEECEEEEECHHHHH
T ss_pred CEEEEEEEEcHHHHH
Confidence 999999998765543
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.1e-09 Score=90.75 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHc----CCCCCCceeee
Q 015040 4 DEGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD-PSVLDQVLQD----KHTIDGRPVEA 77 (414)
Q Consensus 4 ~~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~-~e~A~~Al~~----~~~i~gr~l~v 77 (414)
..+.|+|+||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ +++|++|+.. ..+|.+..+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4688999999999 99999999999999999999999875 69999999 7889988882 45778877777
Q ss_pred eech
Q 015040 78 KRAL 81 (414)
Q Consensus 78 ~~a~ 81 (414)
+...
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 6544
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.3e-09 Score=85.17 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=59.5
Q ss_pred ccceeEecCCCC----CCCH----HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCe
Q 015040 107 KTKKIFVGGLPP----TLTE----DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGK 177 (414)
Q Consensus 107 ~~~~lfV~nLp~----~~te----~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr 177 (414)
+.-+|+|.-++. +..+ .+|.+.|.+||+|..|+|+.|+ +||+|++.++|.+||+ |+ .++.+|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345677766652 2333 6789999999999999999874 8999999999999999 66 799999
Q ss_pred EEEEEecCCC
Q 015040 178 LVEVKRALPK 187 (414)
Q Consensus 178 ~i~V~~a~p~ 187 (414)
.|+|+.++|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999874
No 376
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-08 Score=79.91 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc-CCCCCCceee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF-----GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD-KHTIDGRPVE 76 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~-----G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~i~gr~l~ 76 (414)
+..++|.|.|||++++++.|+-+|++- |+|++|.... .-|+|+|.++++|+++|+. .|.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 346899999999999999999999982 4899888765 2799999999999999996 8999999999
Q ss_pred eeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCC
Q 015040 77 AKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLT 121 (414)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 121 (414)
|....++ ...+|++.+|++.++
T Consensus 78 V~P~~~~-----------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR-----------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC-----------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC-----------------------CcceEeeecCCCCCC
Confidence 9764432 346688888888764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=8.6e-09 Score=80.85 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=59.4
Q ss_pred ccceeEecCCCCC-----CCH----HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 015040 107 KTKKIFVGGLPPT-----LTE----DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNG 176 (414)
Q Consensus 107 ~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~g 176 (414)
+.-||+|.-++.+ ..+ .+|.+.|.+||+|+.|+|+.|+ +||+|.+.++|.+||+ |+ .++.+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4577888877643 222 5688999999999999999884 9999999999999999 66 89999
Q ss_pred eEEEEEecCC
Q 015040 177 KLVEVKRALP 186 (414)
Q Consensus 177 r~i~V~~a~p 186 (414)
|.|+|++..|
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=5.2e-08 Score=89.37 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=59.6
Q ss_pred CCCHHHHHHHhhccCceeeeEEeecC----CCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 119 TLTEDGFRQYFENYGHVTDVVVMYDQ----NTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 119 ~~te~~L~~~F~~~G~I~~v~i~~d~----~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
+..+++|+++|++||.|++|.|+++. ++++++|++||+|.++++|++|++.|+ ..+.+|+|.|++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34678999999999999999999654 445899999999999999999999999 69999999999864
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=3e-08 Score=77.38 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCC----C-CcH---HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCce
Q 015040 4 DEGKLFIGGIAW----D-TTE---GTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGRP 74 (414)
Q Consensus 4 ~~~tLfVgnLp~----~-~te---e~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr~ 74 (414)
...||+|.-++. + .++ .+|.+.|.+||+|+.++|+.++ +||+|.+.++|.+||+ +...+.+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 456888877662 2 332 6789999999999999999874 8999999999999999 778999999
Q ss_pred eeeeechhh
Q 015040 75 VEAKRALSR 83 (414)
Q Consensus 75 l~v~~a~~~ 83 (414)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999987753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=2.2e-07 Score=85.13 Aligned_cols=70 Identities=26% Similarity=0.278 Sum_probs=61.0
Q ss_pred CcHHHHHHHhhccCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeechhhhhh
Q 015040 17 TTEGTLRDYFTRFGDVSQVVIMRDKT----TGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRALSREEQ 86 (414)
Q Consensus 17 ~tee~L~e~F~~~G~V~~v~i~~~~~----tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a~~~~~~ 86 (414)
-.+++|++.|.+||+|++|+|+++.. +.+++|++||+|.+.++|++|++ +...+.+|+|.+..+....-.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 45789999999999999999996654 44899999999999999999999 778999999999998765543
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1e-07 Score=74.72 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCC------CcH---HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCCCc
Q 015040 4 DEGKLFIGGIAWD------TTE---GTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTIDGR 73 (414)
Q Consensus 4 ~~~tLfVgnLp~~------~te---e~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~gr 73 (414)
...||+|.-++.+ .++ .+|.+.|.+||+|+.|+|+.++ +||+|.+.++|.+||+ +..++.+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4578999887643 332 5688999999999999999874 9999999999999999 77899999
Q ss_pred eeeeeech
Q 015040 74 PVEAKRAL 81 (414)
Q Consensus 74 ~l~v~~a~ 81 (414)
.|+|+...
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.5e-06 Score=69.48 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=64.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhcc-----CceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENY-----GHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVE 180 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~ 180 (414)
..++|-|-+||..++++.|+.+++++ +.|++|.+..|.. =|+|+|+|+.+|-+|...++ .+|.+++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 9999999998866 69999999999999988887 699999999
Q ss_pred EEe
Q 015040 181 VKR 183 (414)
Q Consensus 181 V~~ 183 (414)
+--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=6.4e-06 Score=65.34 Aligned_cols=75 Identities=29% Similarity=0.444 Sum_probs=65.2
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhc-----cCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFEN-----YGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEV 181 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~-----~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V 181 (414)
-.++|.|.|||+++.++.|+-+|++ =|+|++|.... .-|+|+|.+.++|+++|++..|.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4588999999999999999999986 25888888864 3699999999999999999999999999999
Q ss_pred EecCCCCC
Q 015040 182 KRALPKDA 189 (414)
Q Consensus 182 ~~a~p~~~ 189 (414)
....++..
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88666554
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.5e-06 Score=66.83 Aligned_cols=73 Identities=10% Similarity=0.216 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcc-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCcee
Q 015040 3 SDEGKLFIGGIAWDTTEGTLRDYFTRF-----GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPV 75 (414)
Q Consensus 3 ~~~~tLfVgnLp~~~tee~L~e~F~~~-----G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l 75 (414)
.+.++|-|=+||.+++++.|+.+++++ +.++.|.++.|.. =|+|+|+|..+|-+|.- +..+|.+++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357899999999999999999999999 9999999999874 79999999999888864 8889999999
Q ss_pred eeeech
Q 015040 76 EAKRAL 81 (414)
Q Consensus 76 ~v~~a~ 81 (414)
.+-...
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 886543
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.46 E-value=0.0003 Score=55.08 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=44.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..+.++| .+|++....||.++|++|+.|. |+.+.|. .|||.|.+++.|..||.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 3566777 9999999999999999998544 5555552 89999999999999998
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00026 Score=56.38 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred cceeEecCCCCCC-CH----HHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 108 TKKIFVGGLPPTL-TE----DGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 108 ~~~lfV~nLp~~~-te----~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
.++|+|.||+.+| +. +.++++|..|.++.....++.-. -..|.|.++++|.+|..+++ ..+++++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998766 22 56788999999988877775432 47899999999999999999 5999999999
Q ss_pred EecCCC
Q 015040 182 KRALPK 187 (414)
Q Consensus 182 ~~a~p~ 187 (414)
-++++-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998754
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00069 Score=55.34 Aligned_cols=75 Identities=11% Similarity=0.203 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH-cCCCCC-Cceeeeeech
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ-DKHTID-GRPVEAKRAL 81 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~i~-gr~l~v~~a~ 81 (414)
+.+.|.|-++|++. .+.|.++|++||+|++...... .-+-.|.|+++.+|++||. +...|. ..+|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46778888999885 6677789999999998886322 2399999999999999999 667776 4778887765
Q ss_pred hhhh
Q 015040 82 SREE 85 (414)
Q Consensus 82 ~~~~ 85 (414)
.+..
T Consensus 96 d~~v 99 (119)
T 1wwh_A 96 DKNV 99 (119)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4433
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.34 E-value=0.00057 Score=53.33 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=52.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHH--cCCCC
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGR--PRGFGFVVFSDPSVLDQVLQ--DKHTI 70 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~--~kG~aFV~F~~~e~A~~Al~--~~~~i 70 (414)
++|.|+.||+.+||+++.+.+....++.....+.-+.+.+ .-.-|+|.|++.+++....+ +.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 6899999999999999999999988888777776554332 33569999999999998887 54443
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.31 E-value=0.00054 Score=53.67 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=45.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
..+.++| .+|.++...||.++|+.|+. ..|+.+.|. .|||.|.+++.|..||..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566667 99999999999999999983 345555553 69999999999999998763
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.26 E-value=0.0012 Score=51.53 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=57.7
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHcC-CccCC-----eEEE
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQR--PRGFGFITFETEDAVDNVLQKVF-HELNG-----KLVE 180 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFVeF~~~e~a~~Al~~~~-~~i~g-----r~i~ 180 (414)
++|.|++||+.+||+++.+.+.....+.....+..+.+.+ .-.-|+|.|.+.+++....+..+ +.|.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999887777666655443332 23579999999999999999888 43322 3445
Q ss_pred EEecC
Q 015040 181 VKRAL 185 (414)
Q Consensus 181 V~~a~ 185 (414)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.001 Score=52.93 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCCCC-c----HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceee
Q 015040 4 DEGKLFIGGIAWDT-T----EGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVE 76 (414)
Q Consensus 4 ~~~tLfVgnLp~~~-t----ee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~ 76 (414)
-.++|+|.||+.++ + .++++++|..|.++.....+++-. -..|.|.++++|.+|-. +...+.+++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36799999998865 2 267899999999999888887643 57899999999999988 55578999999
Q ss_pred eeech
Q 015040 77 AKRAL 81 (414)
Q Consensus 77 v~~a~ 81 (414)
|-.++
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98887
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0032 Score=51.38 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=58.8
Q ss_pred cccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccC-CeEEEEEec
Q 015040 106 FKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELN-GKLVEVKRA 184 (414)
Q Consensus 106 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~-gr~i~V~~a 184 (414)
...+-|.|.++|.. ..+.|.++|++||+|.+...... .-+-.|.|+++.+|++||.+....|. +.+|-|...
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35678899999997 57778889999999998887322 34899999999999999999888887 477777764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.00087 Score=52.66 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=43.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
+.++| .+|++....||.++|++||. ..|+.+.|. .|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45667 99999999999999999983 345555552 89999999999999998
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.001 Score=52.22 Aligned_cols=56 Identities=14% Similarity=0.295 Sum_probs=45.1
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
..+.++| .+|.++...||.++|+.|| -..|+.+.|. .|||.|.+++.|..||..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456666 9999999999999999998 3345555443 69999999999999998763
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.83 E-value=0.0021 Score=50.46 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=54.7
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCC--CceEEEEEeCCHHHHHHHHHHcC-CccCC-----eE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQR--PRGFGFITFETEDAVDNVLQKVF-HELNG-----KL 178 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFVeF~~~e~a~~Al~~~~-~~i~g-----r~ 178 (414)
.+.+|.|+.||+.+||+++.+.+...-++.....+.-+.+.+ .-.-|+|.|.+.+++....+..+ +.|.+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 457899999999999999999888765554443333322222 12458999999999999999988 33322 35
Q ss_pred EEEEec
Q 015040 179 VEVKRA 184 (414)
Q Consensus 179 i~V~~a 184 (414)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 556666
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.75 E-value=0.0014 Score=54.25 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEec---------CCCCC-----cceEEEEEeCCHHHHHHHHH-
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRD---------KTTGR-----PRGFGFVVFSDPSVLDQVLQ- 65 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~---------~~tg~-----~kG~aFV~F~~~e~A~~Al~- 65 (414)
|+.....|.|=+.|++++ ..|.+.|++||.|++-.-+.+ +.+.+ ...+..|+|+++.+|++||.
T Consensus 3 ~~~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 3 LSNGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -----CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred cccCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 455677788889986654 566689999999876221110 00111 24588999999999999999
Q ss_pred cCCCCCCceeeeeechhhhhhcc
Q 015040 66 DKHTIDGRPVEAKRALSREEQHN 88 (414)
Q Consensus 66 ~~~~i~gr~l~v~~a~~~~~~~~ 88 (414)
+.+.|.+..|=|++..+...++.
T Consensus 82 NG~ii~G~mIGV~Py~~~~ve~l 104 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTKDAVERL 104 (132)
T ss_dssp TTCEETTEECEEEECCHHHHHHH
T ss_pred CCeEeCcEEEEEEECCHHHHHHH
Confidence 88899999999988876655443
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.00093 Score=67.40 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..|+|||. .|.++++.+|.++|.+||+|.++.+-+++. -||+|||.+.+++++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 46899997 799999999999999999999999887653 599999999999998886
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.16 E-value=0.0029 Score=49.73 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGR--PRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~--~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+-+|.|+.||+.+||+++.+.+..+=++.....+.-+.+.+ .-.-|+|.|++.+++....+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 456899999999999999998888765554433333332221 22458999999999998887
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.85 E-value=0.0038 Score=62.95 Aligned_cols=58 Identities=10% Similarity=0.386 Sum_probs=44.2
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.++|+|. +|..+++.+|.++|++||+|.++.+.+++ .-||.|||.+++++++++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 5789997 79999999999999999999999987653 3599999999999998876643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.67 E-value=0.013 Score=48.55 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=56.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceee-eEEeecC--------CCCC-----CceEEEEEeCCHHHHHHHHHHcCCc
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTD-VVVMYDQ--------NTQR-----PRGFGFITFETEDAVDNVLQKVFHE 173 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~--------~tg~-----~rG~aFVeF~~~e~a~~Al~~~~~~ 173 (414)
...|.|.+.|++ ....+.++|++||.|.+ +.+.++. ...+ ......|+|+++.+|++||.+....
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456788899885 55667788999999876 3322110 0011 1357799999999999999999999
Q ss_pred cCCeEEEEEecC
Q 015040 174 LNGKLVEVKRAL 185 (414)
Q Consensus 174 i~gr~i~V~~a~ 185 (414)
|.+..|-|..-.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.20 E-value=1 Score=45.84 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=44.5
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
..+.++|. +|..+...+|.++|+.|+. .+|+.+.|. .|||.|.+.++|..+++.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 45566666 8888999999999999984 345544332 69999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.83 E-value=0.73 Score=47.00 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=42.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.+.++|+ +|..+...+|.++|+.|+.| +|+.+.+. .|||.|.+++.|..+|+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHH
Confidence 4567776 88899999999999999954 45555442 89999999999999998
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.89 E-value=7.3 Score=29.64 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~ 66 (414)
.+|.|-|-|||..+-..++.-.....|----|..+. |.|.|.|.+.++...|++.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 467888999999999999988888887655555543 4799999999999999983
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=78.68 E-value=11 Score=28.57 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=51.9
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-C-------ccCCeE
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-H-------ELNGKL 178 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~-------~i~gr~ 178 (414)
..+-|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++...||+++- + +|.+..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45778889999999988887777766655556555 3469999999999999988763 2 455666
Q ss_pred EEEEecCC
Q 015040 179 VEVKRALP 186 (414)
Q Consensus 179 i~V~~a~p 186 (414)
+.|-...|
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 55544333
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=68.50 E-value=23 Score=27.50 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHh-hccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC--ccCCeEEEEEec
Q 015040 115 GLPPTLTEDGFRQYF-ENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH--ELNGKLVEVKRA 184 (414)
Q Consensus 115 nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~--~i~gr~i~V~~a 184 (414)
.++..+.-+||.... +.||.-.++..+ +.+ ..|-..+.+++++||+.++. .+..-+|.+...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cce-------EEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 356778888877666 468887777666 333 67899999999999999983 455556655543
No 406
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=68.05 E-value=15 Score=29.36 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHHHHHHHHcCCCCCCceee
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD----PSVLDQVLQDKHTIDGRPVE 76 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~----~e~A~~Al~~~~~i~gr~l~ 76 (414)
|.....+|.|.++.=.--...|+..+.+.-.|..+.+-... .-+.|+|.. .+...+++++. +..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQDL----GFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH----TCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhcC----CCceE
Confidence 44445678888887776778889999887777766654322 246677743 34445555421 11111
Q ss_pred eeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEE
Q 015040 77 AKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFIT 156 (414)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVe 156 (414)
+... . . ......+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+
T Consensus 71 ~~~~-------~---~-----------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~ 123 (149)
T 2ew9_A 71 VMED-------Y---A-----------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVK 123 (149)
T ss_dssp ECSC-------S---C-----------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEE
T ss_pred eecc-------c---c-----------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEE
Confidence 1000 0 0 00124568888887766677888989888778887775443 368888
Q ss_pred eC----CHHHHHHHHHHcC
Q 015040 157 FE----TEDAVDNVLQKVF 171 (414)
Q Consensus 157 F~----~~e~a~~Al~~~~ 171 (414)
|+ +.+++.++|+.+.
T Consensus 124 ~~~~~~~~~~i~~~i~~~G 142 (149)
T 2ew9_A 124 FDPEIIGPRDIIKIIEEIG 142 (149)
T ss_dssp CCTTTSCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 86 4677778887765
No 407
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=62.08 E-value=14 Score=26.02 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=45.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
...+|.|.++.-.-....|++.+.+ -.|..+.+-.. ..-+.|+|++.+++.++|+.+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 4567889999888888999999998 77888877543 3467888887778888888765
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=60.54 E-value=44 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=28.5
Q ss_pred cHHHHHHHhhc----cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 18 TEGTLRDYFTR----FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 18 tee~L~e~F~~----~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
.|..+++.+++ .+ +|.+|.+.. ..+||.||++...+++..+|.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIK 68 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHH
Confidence 35555554443 22 355555543 378999999999988888886
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.74 E-value=29 Score=24.92 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=37.9
Q ss_pred EEEEcCCC-CCCcHHHHHHHhhccCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeee
Q 015040 7 KLFIGGIA-WDTTEGTLRDYFTRFGD-----VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAK 78 (414)
Q Consensus 7 tLfVgnLp-~~~tee~L~e~F~~~G~-----V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~ 78 (414)
+|||.-=. ..++..+|..++..-.. |-.|.|..+ |.||+..... |+++++ +...+.++.|.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 67775332 34778888888876543 556776543 7888876543 445555 4557889988887
Q ss_pred ech
Q 015040 79 RAL 81 (414)
Q Consensus 79 ~a~ 81 (414)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 410
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=54.48 E-value=36 Score=25.81 Aligned_cols=56 Identities=7% Similarity=0.127 Sum_probs=36.7
Q ss_pred eEecCCCCCCCHHHHHHHhhc-cCc--eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 111 IFVGGLPPTLTEDGFRQYFEN-YGH--VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
|.+-.+|.+++-++|.+.+.. |.. -..+.|..-.+.+. +|++.+.++++.||..+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD-----~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGD-----PCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSC-----CEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCC-----cccccCHHHHHHHHHHHH
Confidence 445556888999998877753 332 12233333222243 699999999999999765
No 411
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=52.71 E-value=21 Score=31.13 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=21.7
Q ss_pred ceEEEEEeCCHHHHHHHHHcCCCCCCceeee
Q 015040 47 RGFGFVVFSDPSVLDQVLQDKHTIDGRPVEA 77 (414)
Q Consensus 47 kG~aFV~F~~~e~A~~Al~~~~~i~gr~l~v 77 (414)
+--.||.|+++++|.++++....| +.|.|
T Consensus 97 ~~~v~il~k~p~d~~~lve~Gv~i--~~vNv 125 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMDGGLPI--TTLNI 125 (187)
T ss_dssp CEEEEEEESSHHHHHHHHHTTCCC--SEEEE
T ss_pred CceEEEEECCHHHHHHHHHcCCCC--CEEEE
Confidence 346899999999999999965544 34444
No 412
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=51.54 E-value=67 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=22.5
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhhccCCeeEEEEE
Q 015040 6 GKLFIGGI----AWDTTEGTLRDYFTRFGDVSQVVIM 38 (414)
Q Consensus 6 ~tLfVgnL----p~~~tee~L~e~F~~~G~V~~v~i~ 38 (414)
..+++++| ...+.-.||+++|+..|- ++|+-.
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lGf-~~V~Ty 42 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLGL-EKVESY 42 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHTC-EEEEEE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcCC-ccceEE
Confidence 35677777 356889999999999873 344433
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.38 E-value=28 Score=26.26 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=38.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
+.-+|+ +..+++..+|++.+++ |+ .|..|..+..+. + .--|+|+++...+|..+.
T Consensus 24 n~~~F~--Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 24 NKLTFI--VDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp CEEEEE--ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHH
T ss_pred CEEEEE--EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHH
Confidence 333444 4568999999999987 45 677887777542 2 225999998877666654
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=50.69 E-value=37 Score=29.07 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=37.1
Q ss_pred ceeEecCCCC-C--------CCHHHHHHHh--hccCceeeeEEeecCCCCCCceEEEEEeCC-HHHHHHHHHH
Q 015040 109 KKIFVGGLPP-T--------LTEDGFRQYF--ENYGHVTDVVVMYDQNTQRPRGFGFITFET-EDAVDNVLQK 169 (414)
Q Consensus 109 ~~lfV~nLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~-~e~a~~Al~~ 169 (414)
-.+.|.|+|. . ...++|++.| ..|.+++ |+.+..+. -.+++|+|+|.+ ..-...|+..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 3455667765 1 3447899977 8898866 55554443 367899999965 4444555443
No 415
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=49.53 E-value=16 Score=26.99 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=38.9
Q ss_pred EEEEEeCCHHHHHHHHHcCCCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHH
Q 015040 49 FGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQY 128 (414)
Q Consensus 49 ~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~ 128 (414)
|.++.|+-+.++.+-|+....++...|+....+..+.. .--++|| |.++++|++++.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r--------------------~YE~m~I--l~P~l~ee~~~~~ 64 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPG--------------------RYEVNIV--LNPNLDQSQLQNE 64 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTT--------------------EEEEEEE--ECTTCCHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCC--------------------ceEEEEE--ECCCCCHHHHHHH
Confidence 88899987766666676444455444433222211100 2345676 6778999999988
Q ss_pred hhccCc
Q 015040 129 FENYGH 134 (414)
Q Consensus 129 F~~~G~ 134 (414)
.++|-.
T Consensus 65 vek~~~ 70 (77)
T 3zzp_A 65 KEIIQR 70 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 416
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=49.28 E-value=58 Score=21.94 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 1 MESDEGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 1 me~~~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
|+....+|.|.++.-..-...|++.+.+.-.|..+.+-... ..+.|+|..
T Consensus 1 m~~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 50 (75)
T 1yjr_A 1 MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDP 50 (75)
T ss_dssp CCCCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECT
T ss_pred CCceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECC
Confidence 56667788999998777788899999998888888775432 367788864
No 417
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=48.19 E-value=44 Score=23.01 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcCC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVFH 172 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~~ 172 (414)
..++.|.++.-.-....|++.+.+.-.|..+.+-... .-+.|+|+ +.+++.++|+.+..
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 4567888887766778899999988788888776543 35889885 57788888887753
No 418
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=47.91 E-value=31 Score=27.53 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=44.6
Q ss_pred cceeEecCCCCCCCHHHHH---HHhhccCceeeeEEeecCCCCCCceEEEEEe--CCHHHHHHHHHHcC-----------
Q 015040 108 TKKIFVGGLPPTLTEDGFR---QYFENYGHVTDVVVMYDQNTQRPRGFGFITF--ETEDAVDNVLQKVF----------- 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF--~~~e~a~~Al~~~~----------- 171 (414)
...|.|.++|+.+..+-.+ .+-..|..-....|+ +...|.-.|.| +|.|+.++||+++-
T Consensus 42 ~l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvt 116 (170)
T 4hhu_A 42 RLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVT 116 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEE
Confidence 4567788888876544322 222345444455565 44466778888 67999999998764
Q ss_pred CccCCeEEEEEe
Q 015040 172 HELNGKLVEVKR 183 (414)
Q Consensus 172 ~~i~gr~i~V~~ 183 (414)
..+.+..|.|..
T Consensus 117 ytl~gn~l~i~i 128 (170)
T 4hhu_A 117 YTLSGNRLVIVI 128 (170)
T ss_dssp EEECSSEEEEEE
T ss_pred EEEeCCEEEEEE
Confidence 135566666554
No 419
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.55 E-value=32 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.7
Q ss_pred EEEEcCCCCC---------CcHHHHHHHh--hccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 015040 7 KLFIGGIAWD---------TTEGTLRDYF--TRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPS 58 (414)
Q Consensus 7 tLfVgnLp~~---------~tee~L~e~F--~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e 58 (414)
++.|-|+|.+ ....+|++.| ..|.++. |+.+..+. -+.++++|+|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCCh
Confidence 4567788872 3447899977 8898876 55555543 57889999997643
No 420
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.92 E-value=28 Score=25.02 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhhccCc-----eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEEEecC
Q 015040 119 TLTEDGFRQYFENYGH-----VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEVKRAL 185 (414)
Q Consensus 119 ~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V~~a~ 185 (414)
.++..+|..++..-.. |-.|.|..+ |.||+..... ++++++.+. ..+.++.|.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 4566777777764433 445666432 7888886644 556777777 58899999988764
No 421
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=43.79 E-value=31 Score=34.84 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEE-EEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFG-FVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~a-FV~F~~~e~A~~Al~ 65 (414)
..+|.|..||..++.++|.+.+... ..|..|.-++|..+ + .+.- .|+++....++.+++
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd-~-~gvrivIelk~~~~~e~vl~ 337 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD-R-TGLRIAIELKKDVNSESIKN 337 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB-T-TBCCEEEEC------CHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC-C-CceEEEEEECCCcCHHHHHH
Confidence 3689999999999998887765532 34444444455433 2 1233 355665555555554
No 422
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=43.32 E-value=63 Score=21.71 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=42.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC---CHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE---TEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~---~~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-.... -+.|+|+ +.+++.++|+++.
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~i~~~i~~~G 63 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE------QAVVSYHGETTPQILTDAVERAG 63 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEECTTCCHHHHHHHHHHTT
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC------EEEEEECCCCCHHHHHHHHHHcC
Confidence 45678888877767788999999887888887765432 5788874 3667777777664
No 423
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=42.57 E-value=67 Score=24.26 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC--ccCCeEEEEEe
Q 015040 115 GLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH--ELNGKLVEVKR 183 (414)
Q Consensus 115 nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~--~i~gr~i~V~~ 183 (414)
.++..+.-+||..... .||.-.++..+.. + -.|-..+.+++++|++.++. .+..-+|.+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn-E-------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-E-------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS-S-------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-e-------eEEeccCHHHHHHHHHHhccCccccceEEEEEc
Confidence 3566678888776664 6888777776622 2 46888999999999999884 44444444443
No 424
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=41.89 E-value=79 Score=25.02 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=35.8
Q ss_pred ceeEecCCCCCCCHHHHHHHhh-------ccCceeeeEEeecCCC-CCCce--EE-EEEeCCHHHHHHHH
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFE-------NYGHVTDVVVMYDQNT-QRPRG--FG-FITFETEDAVDNVL 167 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~rG--~a-FVeF~~~e~a~~Al 167 (414)
+-|.+-.|..++++++++++.+ +.-.|+.+.+-++... ...++ ++ +++|+++++.+.-+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3445557888888876655543 3455677766555431 22233 34 46999999887544
No 425
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=40.69 E-value=51 Score=25.59 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC--ccCCeEEEEE
Q 015040 115 GLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH--ELNGKLVEVK 182 (414)
Q Consensus 115 nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~--~i~gr~i~V~ 182 (414)
.++..+.-+||+.... .||.-.++..+.. + -.|-..+.+++++|++.++. .+..-+|.+.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn-E-------L~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 108 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-E-------LSILLKNQDDLDKAIDILDRSSSMKSLRILLL 108 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS-S-------CEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-e-------EEEecccHHHHHHHHHHhccCccccceEEEEe
Confidence 3566678888877664 6888777776632 2 46888999999999999883 4555555443
No 426
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=40.42 E-value=24 Score=35.25 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=35.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGF-GFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~-aFV~F~~~e~A~~Al~ 65 (414)
...+|.|..||..++.+.|.+.+... ..+..|.-++|.+|.+. +. -.|+++....++.+++
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~-gvrivI~lk~~~~~~~~l~ 299 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV-GLRIVIEIKRDAVAKVVIN 299 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTT-BCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCC-ceEEEEEECCCCCHHHHHH
Confidence 45579999999999998877766542 33444444555422221 23 3455655444444443
No 427
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=38.90 E-value=48 Score=25.41 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHhh-ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCC--ccCCeEEEEE
Q 015040 115 GLPPTLTEDGFRQYFE-NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFH--ELNGKLVEVK 182 (414)
Q Consensus 115 nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~--~i~gr~i~V~ 182 (414)
.++..+.-+||..... .||.-.++..+.. + -.|-..+.+++++|++.++. .+..-+|.+.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn-E-------L~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~ 97 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-E-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 97 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET-T-------EEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-e-------eEEecccHHHHHHHHHHhccCccccceEEEEe
Confidence 4566788888877664 6888777777632 2 57888999999999999883 4555555544
No 428
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=38.28 E-value=86 Score=23.76 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=42.2
Q ss_pred eEecCCCCCCCHHHHHHHhh-------ccCceeeeEEeecCCCCCCce--E-EEEEeCCHHHHHHHHH--------HcCC
Q 015040 111 IFVGGLPPTLTEDGFRQYFE-------NYGHVTDVVVMYDQNTQRPRG--F-GFITFETEDAVDNVLQ--------KVFH 172 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~tg~~rG--~-aFVeF~~~e~a~~Al~--------~~~~ 172 (414)
|.+-.|...+++++++++.+ +.-.|+.+.+-++.. ...++ + -.++|+++++.+.-+. +.-.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~hP~H~~~~~~~~ 86 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQVCPAHVAMKAFMG 86 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTTCHHHHHHHHHHG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHH
Confidence 34446777888776555543 245577777766543 33333 3 4569999988765321 1112
Q ss_pred ccCCeEEEEEecC
Q 015040 173 ELNGKLVEVKRAL 185 (414)
Q Consensus 173 ~i~gr~i~V~~a~ 185 (414)
.+....+.+++..
T Consensus 87 ~~~~~~~v~D~~~ 99 (103)
T 2qyc_A 87 PRIKRVVVYDGEV 99 (103)
T ss_dssp GGEEEEEEEEEEE
T ss_pred HHhcCcEEEEEec
Confidence 3445666666643
No 429
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=43.68 E-value=7 Score=30.85 Aligned_cols=54 Identities=7% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCHHHHHHHhhccCceeeeEEeecCCCCCCceEEE--EEeCCHHHHHHHHHHcCCccC
Q 015040 120 LTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGF--ITFETEDAVDNVLQKVFHELN 175 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aF--VeF~~~e~a~~Al~~~~~~i~ 175 (414)
.++++|+++.+++. +..+.|.+....+++ -|.. =.|.+.++|++|++.|...+.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 45667777777665 445555543222222 1222 267999999999999986554
No 430
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=37.27 E-value=1.9e+02 Score=24.39 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=82.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHHHHHHHHcCCCCCCceeeeeech
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD----PSVLDQVLQDKHTIDGRPVEAKRAL 81 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~----~e~A~~Al~~~~~i~gr~l~v~~a~ 81 (414)
.+|.|.+|.=.--...|++.+.+.-.|.++.+-... .-+.|+|.. .++..++|+.. ...+..+.+....
T Consensus 22 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~-~~gg~~v~~~~~~ 94 (202)
T 2rop_A 22 LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLEN------KTAQVKYDPSCTSPVALQRAIEAL-PPGNFKVSLPDGA 94 (202)
T ss_dssp EEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHTTS-SSSCSEEEC----
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHh-ccCCeEEEecccc
Confidence 357777776666677899999998888887764432 257788754 34455555421 0011122111000
Q ss_pred hhhhhc--ccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC-
Q 015040 82 SREEQH--NSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE- 158 (414)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~- 158 (414)
...... ......................+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~ 168 (202)
T 2rop_A 95 EGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNP 168 (202)
T ss_dssp -------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECT
T ss_pred ccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECC
Confidence 000000 000000000000000001134578888887776778899999988888888875443 36888885
Q ss_pred ---CHHHHHHHHHHcC
Q 015040 159 ---TEDAVDNVLQKVF 171 (414)
Q Consensus 159 ---~~e~a~~Al~~~~ 171 (414)
+.+++.++|+.+.
T Consensus 169 ~~~~~~~i~~~i~~~G 184 (202)
T 2rop_A 169 AVISPEELRAAIEDMG 184 (202)
T ss_dssp TTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcC
Confidence 4567777787765
No 431
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.09 E-value=58 Score=22.49 Aligned_cols=54 Identities=6% Similarity=-0.019 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..+|.|.+|.=.--...|++.+++ -.|..+.+-.. ...+.|+|.++++..++|+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHH
Confidence 457889999877788999999999 88888877443 2367788886666667776
No 432
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=37.02 E-value=84 Score=20.30 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=38.3
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC---CHHHHHHHHHHcC
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE---TEDAVDNVLQKVF 171 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~---~~e~a~~Al~~~~ 171 (414)
++.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|+ +.+++.++|+.+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHcC
Confidence 4667777665566778888888777877777543 235778885 4566677776654
No 433
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=36.91 E-value=89 Score=20.55 Aligned_cols=58 Identities=7% Similarity=0.139 Sum_probs=39.2
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC---HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET---EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~---~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~G 64 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERAG 64 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHHcC
Confidence 3467788876655667788888888778888775443 367888864 455566666654
No 434
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.68 E-value=37 Score=28.34 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
+.-+|+- +.+++..+|++.+++ |+ .|..|..+..+. + .--|||++....+|..+.
T Consensus 88 N~~vF~V--d~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 88 NTMVFYV--HNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp SEEEEEE--CTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHH
T ss_pred CEEEEEE--cCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHH
Confidence 3445554 568899999998886 45 677888777543 2 225999998766555543
No 435
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=36.23 E-value=80 Score=24.79 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred ceeEecCCCCCCCHHHHHHHhhc-------cCceeeeEEeecCCCCCCce--EE-EEEeCCHHHHHHHH
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFEN-------YGHVTDVVVMYDQNTQRPRG--FG-FITFETEDAVDNVL 167 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~tg~~rG--~a-FVeF~~~e~a~~Al 167 (414)
+-|.+-.|...+++++++++.+. .-.|+.+.+-++.. ...++ ++ +++|+++++.++-+
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 33445568888888876665543 33466666655543 23233 34 46899988876443
No 436
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=35.06 E-value=82 Score=23.22 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=32.0
Q ss_pred CcHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH--cCCCCCCceeeeeec
Q 015040 17 TTEGTLRDYFTRFGD-VSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ--DKHTIDGRPVEAKRA 80 (414)
Q Consensus 17 ~tee~L~e~F~~~G~-V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~--~~~~i~gr~l~v~~a 80 (414)
.||++|+.+++.|-. ..+|+ .+|...+.++.++|.+ .+.+|+-+.-+|...
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkvtsp 86 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKVTSP 86 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeecCCh
Confidence 588999999888742 22222 2344556677777766 566777776666543
No 437
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=34.64 E-value=34 Score=28.30 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
+.-+|+ +..+++..+|++.+++ |+ .|+.|..+..+. + .--|||++....+|..+.
T Consensus 80 N~~vF~--Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 80 NILVFQ--VSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIA 136 (142)
T ss_dssp CEEEEE--ECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHH
T ss_pred CEEEEE--EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHH
Confidence 334454 4568899999998886 45 678888777543 2 225999998766555543
No 438
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=34.43 E-value=1e+02 Score=20.40 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=41.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+ +.+++.++|+.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1osd_A 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADAG 65 (72)
T ss_dssp EEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHTT
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467788887766778899999888778877775442 36788885 3566777777764
No 439
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=33.88 E-value=44 Score=30.42 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=19.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCC
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGD 31 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~ 31 (414)
...+||-+-..+.+.++|++++.++|-
T Consensus 13 G~~f~V~sg~~~~~k~~L~~lI~~~GG 39 (263)
T 3ii6_X 13 DVEFCVMSGTDSQPKPDLENRIAEFGG 39 (263)
T ss_dssp TCEEEECCCC--CCHHHHHHHHHHTTC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHcCC
Confidence 355678665678899999999999884
No 440
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=32.98 E-value=1e+02 Score=20.19 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=39.1
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC---HHHHHHHHHHcC
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET---EDAVDNVLQKVF 171 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~---~e~a~~Al~~~~ 171 (414)
++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~G 61 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAGLG 61 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHTTT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHHCC
Confidence 46777777666677888888888778888775443 357788863 566667776654
No 441
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=32.72 E-value=1.7e+02 Score=22.49 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred eeEecCCCCCCCHHHHHHHhhc-------cCceeeeEEeecCCC-CCCce---EEEEEeCCHHHHHHHHHH--------c
Q 015040 110 KIFVGGLPPTLTEDGFRQYFEN-------YGHVTDVVVMYDQNT-QRPRG---FGFITFETEDAVDNVLQK--------V 170 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~t-g~~rG---~aFVeF~~~e~a~~Al~~--------~ 170 (414)
.|.+-.|...+++++++++.+. .-.|+.+.+-++... ...++ ..+++|+++++.+.-+.. .
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~H~~~~~~ 92 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATI 92 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHH
Confidence 3444568888888876655533 344666666554432 22233 345699999988764431 1
Q ss_pred CCccCCeEEEEEecC
Q 015040 171 FHELNGKLVEVKRAL 185 (414)
Q Consensus 171 ~~~i~gr~i~V~~a~ 185 (414)
-..+....+.+++..
T Consensus 93 ~~~~~~~~~v~D~~~ 107 (112)
T 1q4r_A 93 FLGSLDKVLVIDYKP 107 (112)
T ss_dssp HHHTEEEEEEEEECC
T ss_pred HHHHhcCcEEEeeec
Confidence 113445667777643
No 442
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=32.13 E-value=1.3e+02 Score=21.40 Aligned_cols=64 Identities=9% Similarity=0.184 Sum_probs=35.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCCCC
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDG 72 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i~g 72 (414)
+|.|--....=.-.+|.++|.+.+ .|.++.+..... ...-..-|+..+.+..+++++....+.+
T Consensus 7 ~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~ 71 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQG 71 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCC
Confidence 344433333334578888888876 688877765321 1111222445677777777775444443
No 443
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=31.77 E-value=1.5e+02 Score=22.34 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=43.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
..+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~G 70 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAALG 70 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4567888888777788899999988778888775442 368889863 466777777765
No 444
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=31.44 E-value=31 Score=28.93 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
+.-+|+- ..+++..+|++.+++ |+ .|..|..+..+. + .--|||++....+|..+.
T Consensus 90 N~~vF~V--d~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 90 NTLVFIV--DLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-G--KKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp SEEEEEE--CSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHH
T ss_pred CEEEEEE--cCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEcCCCCcHHHHH
Confidence 3344543 557888888888886 45 677887777542 2 225999998876666654
No 445
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=31.36 E-value=1.1e+02 Score=23.36 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=34.1
Q ss_pred eeEecCCCCCCCHHHHHHHhhc-------cCceeeeEEeecCCC---CCCce--EE-EEEeCCHHHHHHH
Q 015040 110 KIFVGGLPPTLTEDGFRQYFEN-------YGHVTDVVVMYDQNT---QRPRG--FG-FITFETEDAVDNV 166 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~t---g~~rG--~a-FVeF~~~e~a~~A 166 (414)
.|.+-.|...+++++++++.+. .-.|+.+.+-.+... ...++ ++ +++|++.++.+.-
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 3444568888888876555433 445666666555432 22333 34 4699999988644
No 446
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=30.95 E-value=1.2e+02 Score=20.31 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=39.6
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 64 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDMG 64 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 457777776655567788888887778877775443 367888853 566777777764
No 447
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=30.92 E-value=32 Score=36.08 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..+|.|..||..++.+.|.+.+... ..|..|.=++|.++.+.----.|+++....++.+++
T Consensus 457 ~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~ 520 (692)
T 2xcs_B 457 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILN 520 (692)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHH
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHH
Confidence 5689999999999988877755432 344445445554122211123456665555554444
No 448
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=30.87 E-value=1.3e+02 Score=20.51 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=43.8
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
...++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 70 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDMG 70 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHC
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHCC
Confidence 45678888988877888899999888778777775543 357888853 566777777764
No 449
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=30.26 E-value=70 Score=23.22 Aligned_cols=57 Identities=11% Similarity=0.267 Sum_probs=40.5
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHc
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKV 170 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~ 170 (414)
..+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 4567788776655667788888888778888775443 368888853 56677777766
No 450
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.09 E-value=60 Score=24.48 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
+|++|+|.+-...++.|++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998877778999999999986
No 451
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.99 E-value=11 Score=31.52 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=17.4
Q ss_pred HHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC
Q 015040 122 EDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE 158 (414)
Q Consensus 122 e~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~ 158 (414)
++||.++|...|.|+..... |||+||+-+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CCcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 35666777777777665442 789999875
No 452
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=28.89 E-value=1.3e+02 Score=23.75 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=32.0
Q ss_pred eEecCCCCCCCHHHHHHHhh-------ccCceeeeEEeecCCCCCCceEEE-EEeCCHHHHHH
Q 015040 111 IFVGGLPPTLTEDGFRQYFE-------NYGHVTDVVVMYDQNTQRPRGFGF-ITFETEDAVDN 165 (414)
Q Consensus 111 lfV~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~tg~~rG~aF-VeF~~~e~a~~ 165 (414)
|.+-.|...+++++++++.+ +.-.|+.+.+-++......--++| ++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 44446777777776555543 345567777655543211122444 68999988765
No 453
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.49 E-value=1e+02 Score=23.19 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=25.1
Q ss_pred eeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 135 VTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 135 I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
|.+|.++. ...||.||+++..+++..+|+.+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55555553 268999999999999988887776
No 454
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=28.48 E-value=1.5e+02 Score=20.66 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=43.4
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~ 171 (414)
...+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+ +.+++.++|+.+.
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 34568888888777778899999888888888775442 36888885 3566777777764
No 455
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=28.43 E-value=1.3e+02 Score=19.93 Aligned_cols=58 Identities=7% Similarity=0.086 Sum_probs=40.6
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++++.+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 66 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIESLG 66 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4568888888777778899999888778887775442 367888864 344556665543
No 456
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.37 E-value=1.4e+02 Score=20.20 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=40.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC----CHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS----DPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~----~~e~A~~Al~ 65 (414)
.+|.|.++.-.--...|++.+++.-.|.++.+-... .-+.|+|. +.++..++|+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~ 61 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIE 61 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHH
Confidence 467888887776778999999999888888775543 26788885 4566666665
No 457
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.30 E-value=86 Score=24.45 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=22.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCc
Q 015040 149 PRGFGFITFETEDAVDNVLQKVFHE 173 (414)
Q Consensus 149 ~rG~aFVeF~~~e~a~~Al~~~~~~ 173 (414)
.|||-|||=+++.+++.|++.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999999988753
No 458
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=28.11 E-value=1.3e+02 Score=19.75 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=39.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~ 171 (414)
..+|.|.++.-......|++.+.+.-.|..+.+-.. .+.+.|+|+ +.+++.++|+.+.
T Consensus 6 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 67 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQG 67 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHTT
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 456788888665556778888888777877777543 235788885 3566677776654
No 459
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=27.43 E-value=94 Score=20.55 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=39.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC----HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET----EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~----~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1aw0_A 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDMG 65 (72)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHCC
Confidence 3457777776554566788888887777777775442 367888863 566777777664
No 460
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.38 E-value=79 Score=24.48 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcCCccCCeEEEEEecC
Q 015040 116 LPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVFHELNGKLVEVKRAL 185 (414)
Q Consensus 116 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~i~V~~a~ 185 (414)
.+.++|+++|..++...-.+..+.|-.-.+.+. -|...+..+.+.||+..-+ .++.|++..-+
T Consensus 32 ~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD-----~V~i~Sq~E~eEAlkva~k--~~n~L~m~V~~ 94 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMAVK--QGNQLQMQVHE 94 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC-----EECCCSHHHHHHHHHHHHH--HTSEEEEECCB
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-----EEEEecHHHHHHHHHHhcc--CCCEEEEEEee
Confidence 456799999999987533444444433222232 3667778888888774322 23445555433
No 461
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=27.30 E-value=97 Score=21.07 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=40.4
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~ 171 (414)
..+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+ +.+++.++|+.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (77)
T 1y3j_A 4 KCYIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIRELG 65 (77)
T ss_dssp EEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHHT
T ss_pred EEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3567788887766778889999887777776664332 35788885 3566777777764
No 462
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=27.30 E-value=66 Score=32.23 Aligned_cols=61 Identities=10% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 4 DEGKLFIGGIAWDTTEGTLRDYFTRF---GDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 4 ~~~tLfVgnLp~~~tee~L~e~F~~~---G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
...+|.|..||..++.+.|.+.+... ..|..|.-++|..+...- --.|+++....++.+++
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gv-rivIelk~~~~~~~~l~ 288 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGM-RMVIEIKRGEVGEVVLN 288 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCC-CEEEEECTTSCHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCce-EEEEEECCCCCHHHHHH
Confidence 35689999999999988877765432 344444445554332211 22455655444544444
No 463
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=27.14 E-value=2.2e+02 Score=22.19 Aligned_cols=120 Identities=8% Similarity=0.163 Sum_probs=76.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHHHHHHHHcCCCCCCceeeeeechh
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD----PSVLDQVLQDKHTIDGRPVEAKRALS 82 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~----~e~A~~Al~~~~~i~gr~l~v~~a~~ 82 (414)
++.|.++.-..-...|+..+.+.-.|.++.+-... ..+.|+|.. .++..+++++. +..+.
T Consensus 9 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~------ 72 (151)
T 1p6t_A 9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKL----GYHVV------ 72 (151)
T ss_dssp EEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGG------TEEEEEECTTTSCHHHHHHHHHHH----TCEEC------
T ss_pred EEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccC------CEEEEEEcCCcCCHHHHHHHHHHc----CCccc------
Confidence 46677766555567788888887778777654332 245666652 33333444310 00000
Q ss_pred hhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----
Q 015040 83 REEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE---- 158 (414)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~---- 158 (414)
....+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+
T Consensus 73 -----------------------~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~ 123 (151)
T 1p6t_A 73 -----------------------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEA 123 (151)
T ss_dssp -----------------------CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTT------TEEEEEECTTTC
T ss_pred -----------------------ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccC------CEEEEEECCCCC
Confidence 023568888888877788899999988888877775442 36888886
Q ss_pred CHHHHHHHHHHcC
Q 015040 159 TEDAVDNVLQKVF 171 (414)
Q Consensus 159 ~~e~a~~Al~~~~ 171 (414)
+.+++.++|+.+.
T Consensus 124 ~~~~i~~~i~~~G 136 (151)
T 1p6t_A 124 SVSDLKEAVDKLG 136 (151)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC
Confidence 4677778887765
No 464
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=26.91 E-value=71 Score=23.54 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCHHHHHHHhhccCce-eeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC-CccCCeEEEE
Q 015040 120 LTEDGFRQYFENYGHV-TDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF-HELNGKLVEV 181 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~-~~i~gr~i~V 181 (414)
.||++|+++++.|-.- ..|+ .+|...+.+++++|.+... .+|+=+.-+|
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 5899999999887531 1222 2344566777888877665 3555444333
No 465
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.82 E-value=1.6e+02 Score=25.74 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=25.1
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCccCCeE
Q 015040 149 PRGFGFITFETEDAVDNVLQKVFHELNGKL 178 (414)
Q Consensus 149 ~rG~aFVeF~~~e~a~~Al~~~~~~i~gr~ 178 (414)
-|||-|||=+++.++++||+.+.+.+..++
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~~~ 177 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYISQK 177 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcCCc
Confidence 589999999999999999999987544443
No 466
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.78 E-value=71 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
+|++|+|.+-...++.|+||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998877778999999999986
No 467
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.39 E-value=92 Score=20.81 Aligned_cols=54 Identities=11% Similarity=0.221 Sum_probs=38.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC---CHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS---DPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~---~~e~A~~Al~ 65 (414)
.++.|.+|.-..-...|++.+++...|.++.+-... .-+.|+|. ++++..++|+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHH
Confidence 467788887777788999999999888888775543 25778874 3445555554
No 468
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.93 E-value=46 Score=31.89 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTR 28 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~ 28 (414)
.++|+|||.+++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
No 469
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=25.52 E-value=3.8e+02 Score=24.22 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=19.5
Q ss_pred EEEeCCHHHHHHHHHHcCCccCCeEEEE
Q 015040 154 FITFETEDAVDNVLQKVFHELNGKLVEV 181 (414)
Q Consensus 154 FVeF~~~e~a~~Al~~~~~~i~gr~i~V 181 (414)
.-.|-+.++++.+|++.......-.|.|
T Consensus 159 iPlFF~KedL~~~l~~~kkq~P~~~I~V 186 (252)
T 4ev1_A 159 VPLFLSKQDAQGLLGQVKPKHPKADIQV 186 (252)
T ss_dssp EEEESSHHHHHHHHHHHTTTCTTCEEEE
T ss_pred EeeEecHHHHHHHHHHHHHhCCCCcEEE
Confidence 3467889999999998875444444554
No 470
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.50 E-value=79 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSD 56 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~ 56 (414)
+|++|+|.+-...++.|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 68889998877778999999999986
No 471
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.18 E-value=1.2e+02 Score=22.72 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=36.4
Q ss_pred EecCCCCCCCHHHHHHHhhc-cC-ceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHc
Q 015040 112 FVGGLPPTLTEDGFRQYFEN-YG-HVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKV 170 (414)
Q Consensus 112 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~ 170 (414)
++..++..++..+|++.+++ |+ .|..|..+.-+. + .--|+|.+....+|.....++
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHhh
Confidence 44456778999999999987 44 456666654432 1 235999997766555554443
No 472
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=25.05 E-value=58 Score=31.75 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=37.0
Q ss_pred EEEcCCCCCC----cHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 015040 8 LFIGGIAWDT----TEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQD 66 (414)
Q Consensus 8 LfVgnLp~~~----tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~ 66 (414)
-+|+||..-. ....+.++.++||+|..+++-. .-+|...+++.+++++.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHh
Confidence 3677775432 2467888889999998887643 346778999999999973
No 473
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.33 E-value=1.7e+02 Score=22.71 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.1
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHcCCCC
Q 015040 31 DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTI 70 (414)
Q Consensus 31 ~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~~~~~i 70 (414)
.|.+|.... ..|||-|||-.++.++++|++....+
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 366665543 25899999999999999999954333
No 474
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.16 E-value=33 Score=31.59 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=34.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
..+.|+|||..++...|.++++....++.+.+|.. .|.|++.+.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q----------------kEva~Rl~A 158 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ----------------NEVVERMVA 158 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE----------------HHHHHHHTC
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee----------------HHHHHHHhC
Confidence 46789999999999999999987655666655553 477787776
No 475
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.04 E-value=1.2e+02 Score=22.66 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCCCCcHHHHHHHhhc-cC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 12 GIAWDTTEGTLRDYFTR-FG-DVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 12 nLp~~~tee~L~e~F~~-~G-~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
.++.+++..+|++.+++ |+ +|..|..+..+. ..--|+|+++..++|..+.
T Consensus 28 ~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 28 AVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHH
T ss_pred EECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHH
Confidence 35678999999999986 55 678888777542 2226999998776655443
No 476
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=24.03 E-value=89 Score=23.93 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=36.1
Q ss_pred EEEEEeCCHHHHHHHHHcCCCCCCceeeeeechhhhhhcccCCCCCCCCCCCCCCCccccceeEecCCCCCCCHHHHHHH
Q 015040 49 FGFVVFSDPSVLDQVLQDKHTIDGRPVEAKRALSREEQHNSRSGNFNSGRGSEGGGYFKTKKIFVGGLPPTLTEDGFRQY 128 (414)
Q Consensus 49 ~aFV~F~~~e~A~~Al~~~~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~ 128 (414)
|+++.|+-+.++.+-|+....|+...|.......... ..--++|| |.+++++++++++
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~M--------------------r~YE~m~I--l~P~l~ee~~~~~ 64 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP--------------------GRYEVNIV--LNPNLDQSQLALE 64 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSSS--------------------SCEEEEEE--CCSSCCHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhhh--------------------hhhheeee--eCCCCCHHHHHHH
Confidence 7899998888887777733333332222211111000 02345676 7788999988877
Q ss_pred hhcc
Q 015040 129 FENY 132 (414)
Q Consensus 129 F~~~ 132 (414)
.++|
T Consensus 65 ve~~ 68 (96)
T 2kjw_A 65 KEII 68 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 477
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.98 E-value=65 Score=33.57 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHhh----ccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 115 GLPPTLTEDGFRQYFE----NYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 115 nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
.++.+.+--||.++|- .+|.|+++.|-..+. .+.+-+++|.|.+.+++.+++..+.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 4455555568899883 689999887755433 2335678999999998888887654
No 478
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=23.86 E-value=1.6e+02 Score=19.40 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=41.6
Q ss_pred ccceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC----CHHHHHHHHHHcC
Q 015040 107 KTKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE----TEDAVDNVLQKVF 171 (414)
Q Consensus 107 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~----~~e~a~~Al~~~~ 171 (414)
...++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+ +.+++.++|+.+.
T Consensus 6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 68 (76)
T 1opz_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKLG 68 (76)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCC
Confidence 34568888887766677799999887778777765443 35778885 3566677777654
No 479
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.84 E-value=58 Score=29.85 Aligned_cols=44 Identities=11% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~~e~A~~Al~ 65 (414)
...+.|+|||..++...|.++++. ..+..+.+|.. .|.|++.+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q----------------kEva~Rl~A 153 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ----------------KEVAERMTA 153 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE----------------HHHHHHHTC
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee----------------eeeeeeccc
Confidence 346789999999999999999987 55655555443 477888776
No 480
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=23.80 E-value=1.2e+02 Score=29.79 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=15.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhh
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFE 130 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~ 130 (414)
..+-.|.+.+.+++.+++++++.
T Consensus 101 ~LTY~i~~~t~~l~~~~v~~~i~ 123 (425)
T 1l6j_A 101 NITYWIQNYSEDLPRAVIDDAFA 123 (425)
T ss_dssp EEEEEECCCCTTSCHHHHHHHHH
T ss_pred eeEEEEecCCCCCCHHHHHHHHH
Confidence 34556778888888877766654
No 481
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=23.76 E-value=1.7e+02 Score=19.51 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=41.2
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCC--HHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFET--EDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~--~e~a~~Al~~~~ 171 (414)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+++.++|+.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~G 63 (73)
T 1mwy_A 4 RYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKAG 63 (73)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHHT
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHcC
Confidence 3467888887766778899999888778887775443 357888865 455666666654
No 482
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=23.68 E-value=1.6e+02 Score=23.12 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=32.3
Q ss_pred eeEecCCCCCCCHHHHHHHhhc------cCceeeeEEeecCCC----CCCce--EE-EEEeCCHHHHHH
Q 015040 110 KIFVGGLPPTLTEDGFRQYFEN------YGHVTDVVVMYDQNT----QRPRG--FG-FITFETEDAVDN 165 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~------~G~I~~v~i~~d~~t----g~~rG--~a-FVeF~~~e~a~~ 165 (414)
-|.+-.|...+++++++++.+. .-.|+.+.+-.+..+ ...++ ++ +++|+++++.++
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 3444567788888876555433 334556665554432 22333 34 468999888764
No 483
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=23.43 E-value=1.4e+02 Score=19.57 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=37.6
Q ss_pred ceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC---CHHHHHHHHHHcC
Q 015040 109 KKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE---TEDAVDNVLQKVF 171 (414)
Q Consensus 109 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~---~~e~a~~Al~~~~ 171 (414)
.+|.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|+ +.+.+.++|+.+.
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G 63 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDCG 63 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHCC
Confidence 35677777655556678888887777777666433 336778885 3566677777664
No 484
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.23 E-value=1.3e+02 Score=22.29 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=35.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 015040 6 GKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS-DPSVLDQVLQ 65 (414)
Q Consensus 6 ~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~-~~e~A~~Al~ 65 (414)
.+|.|. +.-..-...|++.+.+.-.|.++.+-... ..+.|++. ++++..++|+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~ 74 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLE 74 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHH
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHH
Confidence 456666 65555567889999998888888875543 25667764 4555666665
No 485
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=23.23 E-value=75 Score=21.07 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=36.2
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeCCHHHHHHHHHHcC
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFETEDAVDNVLQKVF 171 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~~~e~a~~Al~~~~ 171 (414)
++.|.++.-......+++.+.+. .|..+.+-.. ...+.|+++..+++.++|+.+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 58 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEEID 58 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHTTT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHHcC
Confidence 45666665554566788888877 7877776543 2367888876555566666554
No 486
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.10 E-value=2.4e+02 Score=21.65 Aligned_cols=49 Identities=10% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHhhcc-CC---eeEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHH
Q 015040 15 WDTTEGTLRDYFTRF-GD---VSQVVIMR-DKTTGRPRGFGFVVFSDPSVLDQVL 64 (414)
Q Consensus 15 ~~~tee~L~e~F~~~-G~---V~~v~i~~-~~~tg~~kG~aFV~F~~~e~A~~Al 64 (414)
.+.+..+|++.+.+. .. ++-|.=++ .--.+++.|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 467888888877653 32 22222222 2224567788865 77777766554
No 487
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.97 E-value=41 Score=18.89 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=11.2
Q ss_pred CcHHHHHHHhhcc
Q 015040 17 TTEGTLRDYFTRF 29 (414)
Q Consensus 17 ~tee~L~e~F~~~ 29 (414)
-+|.+|++++++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 4789999999987
No 488
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.95 E-value=2.1e+02 Score=21.16 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=39.3
Q ss_pred cceeEecCCCCCCCHHHHHHHhhccCceeeeEEeecCCCCCCceEEEEEeC-CHHHHHHHHHHcC
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFENYGHVTDVVVMYDQNTQRPRGFGFITFE-TEDAVDNVLQKVF 171 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFVeF~-~~e~a~~Al~~~~ 171 (414)
..+|.|. +.-......|++.+.+.-.|..+.+-... ..+.|+++ +.+++.++|+++.
T Consensus 20 ~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~G 77 (98)
T 2crl_A 20 TLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGTG 77 (98)
T ss_dssp EEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTTT
T ss_pred EEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHhC
Confidence 3456666 65544557788888888778888876543 35778774 5677778887764
No 489
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.44 E-value=79 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=21.1
Q ss_pred ceeeeEEeecCCCCCCceEEEEEeCC
Q 015040 134 HVTDVVVMYDQNTQRPRGFGFITFET 159 (414)
Q Consensus 134 ~I~~v~i~~d~~tg~~rG~aFVeF~~ 159 (414)
+|++|+|.+-...++-|+||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887776677889999999975
No 490
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.43 E-value=2.4e+02 Score=21.78 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHhhcc-CC---eeEE-EEEecCCCCCcceEEEEEeCCHHHHHH
Q 015040 15 WDTTEGTLRDYFTRF-GD---VSQV-VIMRDKTTGRPRGFGFVVFSDPSVLDQ 62 (414)
Q Consensus 15 ~~~tee~L~e~F~~~-G~---V~~v-~i~~~~~tg~~kG~aFV~F~~~e~A~~ 62 (414)
.+.+..+|++.+.+. .. ++-| .+...--.+++.|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 467888888877653 32 2222 22222234568888866 788777765
No 491
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.34 E-value=72 Score=26.55 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHhhc-cCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHH
Q 015040 15 WDTTEGTLRDYFTR-FGDVSQVVIMRDKT----TGRPRGFGFVVFSDPSVLDQV 63 (414)
Q Consensus 15 ~~~tee~L~e~F~~-~G~V~~v~i~~~~~----tg~~kG~aFV~F~~~e~A~~A 63 (414)
.+++..||++.+.+ |..-.++.|+..-. .+++.|||.| |++++.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35788889888875 44322222222212 3567888877 7787777654
No 492
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=22.30 E-value=2.5e+02 Score=21.94 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred eeEecCCCCCCCHHHH-------HHHhh----ccCceeeeEEeecCCCCCCceEE-EEEeCCHHHHHHHH
Q 015040 110 KIFVGGLPPTLTEDGF-------RQYFE----NYGHVTDVVVMYDQNTQRPRGFG-FITFETEDAVDNVL 167 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L-------~~~F~----~~G~I~~v~i~~d~~tg~~rG~a-FVeF~~~e~a~~Al 167 (414)
-|.+-.|...+++++. ++.|+ +.-.|+.+.+-++......--++ .++|+|+++.++-+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~Y~ 92 (118)
T 3fmb_A 23 HIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKFYA 92 (118)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHHHh
Confidence 3444467777776653 23343 23446666666553321122234 46999999877443
No 493
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=22.17 E-value=1.6e+02 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=15.8
Q ss_pred cceeEecCCCCCCCHHHHHHHhh
Q 015040 108 TKKIFVGGLPPTLTEDGFRQYFE 130 (414)
Q Consensus 108 ~~~lfV~nLp~~~te~~L~~~F~ 130 (414)
..+-.|.+.+..++.++++++++
T Consensus 92 ~LTY~i~~~~~~l~~~~v~~~i~ 114 (421)
T 1eak_A 92 QITYRIIGYTPDLDPETVDDAFA 114 (421)
T ss_dssp EEEEEECCCCTTSCHHHHHHHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHH
Confidence 34556778888888877766654
No 494
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.94 E-value=1.7e+02 Score=22.80 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHhhc-cCC---eeEEEEEec-CCCCCcceEEEEEeCCHHHHHHH
Q 015040 15 WDTTEGTLRDYFTR-FGD---VSQVVIMRD-KTTGRPRGFGFVVFSDPSVLDQV 63 (414)
Q Consensus 15 ~~~tee~L~e~F~~-~G~---V~~v~i~~~-~~tg~~kG~aFV~F~~~e~A~~A 63 (414)
.+.+..+|++.+.+ +.. ++-|.=++. --.+++.|||.| |++.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888887764 332 222222222 223568888866 7888777654
No 495
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=21.91 E-value=1.9e+02 Score=19.51 Aligned_cols=55 Identities=9% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHHHHHHHH
Q 015040 5 EGKLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFSD----PSVLDQVLQ 65 (414)
Q Consensus 5 ~~tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~~----~e~A~~Al~ 65 (414)
..+|.|.++.-..-...|++.+.+.-.|.++.+-... ..+.|+|.. .++..++|+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~ 67 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAID 67 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHH
Confidence 4467888988777888899999998878777765543 367788753 345555565
No 496
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.23 E-value=1.7e+02 Score=18.65 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=35.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC---CHHHHHHHHH
Q 015040 7 KLFIGGIAWDTTEGTLRDYFTRFGDVSQVVIMRDKTTGRPRGFGFVVFS---DPSVLDQVLQ 65 (414)
Q Consensus 7 tLfVgnLp~~~tee~L~e~F~~~G~V~~v~i~~~~~tg~~kG~aFV~F~---~~e~A~~Al~ 65 (414)
++.|.++.-..-...|++.+.+.-.|..+.+-... ..+.|++. ++++..++|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 59 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALL 59 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHH
Confidence 56677776666678899999988888887775432 25677775 3444455554
No 497
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=21.08 E-value=2.8e+02 Score=21.10 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=41.0
Q ss_pred ecCCCCCCCHHHHHHHhh----ccCceeeeEEeecC-CC-CCCce--E-EEEEeCCHHHHHHHHHH--------cCCccC
Q 015040 113 VGGLPPTLTEDGFRQYFE----NYGHVTDVVVMYDQ-NT-QRPRG--F-GFITFETEDAVDNVLQK--------VFHELN 175 (414)
Q Consensus 113 V~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~-~t-g~~rG--~-aFVeF~~~e~a~~Al~~--------~~~~i~ 175 (414)
+-.|..+++.+++++.++ +.-.|+.+.+-++. .. ...++ + ..++|+|+++.+.-+.. .-..+.
T Consensus 11 lfklk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~ 90 (111)
T 1rjj_A 11 VVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVI 90 (111)
T ss_dssp EEECSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTC
T ss_pred EEEECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 334555555566655554 34456777666554 32 22233 3 45699999988754321 112455
Q ss_pred CeEEEEEecC
Q 015040 176 GKLVEVKRAL 185 (414)
Q Consensus 176 gr~i~V~~a~ 185 (414)
...+.+++..
T Consensus 91 ~~~~v~D~~~ 100 (111)
T 1rjj_A 91 DKIVLLDFPV 100 (111)
T ss_dssp SEEEEEEEEE
T ss_pred cceEEEEeEc
Confidence 6777777754
No 498
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.05 E-value=1.1e+02 Score=25.59 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCHHHHHHHhhccCcee---eeEEeecCCCCCCceEEEEE
Q 015040 120 LTEDGFRQYFENYGHVT---DVVVMYDQNTQRPRGFGFIT 156 (414)
Q Consensus 120 ~te~~L~~~F~~~G~I~---~v~i~~d~~tg~~rG~aFVe 156 (414)
+|+++|+++-++.+++. ++.+..|.++++.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999999999876 44455554478877776654
No 499
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.72 E-value=1.8e+02 Score=21.73 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEEecCC
Q 015040 5 EGKLFIGGIAWD-TTEGTLRDYFTRFGDVSQVVIMRDKT 42 (414)
Q Consensus 5 ~~tLfVgnLp~~-~tee~L~e~F~~~G~V~~v~i~~~~~ 42 (414)
...|-|.+.+.. ++.+++.+++...+..+.+.|.++..
T Consensus 63 D~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 63 DQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP 101 (107)
T ss_dssp CBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred CEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 445556665543 46666666666666666677766543
No 500
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.47 E-value=49 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=15.4
Q ss_pred eeEecCCCCCCCHHHHHHHhhccCc
Q 015040 110 KIFVGGLPPTLTEDGFRQYFENYGH 134 (414)
Q Consensus 110 ~lfV~nLp~~~te~~L~~~F~~~G~ 134 (414)
.||-+.--..|+.++|++.|+.||.
T Consensus 16 ~~~~~~~~~~Vsae~L~eEfdefGi 40 (101)
T 2keb_A 16 VLFQGPGSMSASAQQLAEELQIFGL 40 (101)
T ss_dssp --------CCCCHHHHHHHHHHHTC
T ss_pred heeeCCchhhccHHHHHHHHHHcCC
Confidence 4555555567999999999999985
Done!