BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015044
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
Length = 165
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 25/152 (16%)
Query: 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQL 138
IS+ +E+G + + +F+ RGYNIESL+V+ +D L T+V +G D +++Q+ +QL
Sbjct: 7 ISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQITKQL 66
Query: 139 QKLVNVLKVEDFSNEPVIERELMLIKVNADPK-----------------------FCAEV 175
KL+ V+K+ D S+E +EREL L+KV A K + E+
Sbjct: 67 NKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYTIEL 126
Query: 176 SGDPGKVAAVQRNSSTVGILEIARTGKTAFRR 207
+G K+ + ILEIARTG + R
Sbjct: 127 TGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 27/156 (17%)
Query: 79 RRI-SVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVI 135
RRI SV + +ESG + + +F++RGYNIESL V+ D L TI G ++VL+Q+
Sbjct: 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 136 EQLQKLVNVLKVEDFSNEPVIERELMLIKVNAD-----------------------PKFC 172
+QL KLV+VL+V + +ERE+ML+K+ A +
Sbjct: 63 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 173 AEVSGDPGKVAAVQRNSSTVG-ILEIARTGKTAFRR 207
+++G GK+ A + V I+E+AR+G R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158
>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit
From Thermotoga Maritima
Length = 193
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 68 FSFSSTNRSELRRISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS 125
F T++ +S V ++ GV + +FARRG+NI S+ V ++ GL I V
Sbjct: 19 FQGHXTDQIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVK 78
Query: 126 GTDRVLQQVIEQLQKLVNVLKVE--DFSNEPVIERELMLIKVNADP---KFCAEVSGDPG 180
G D+ ++Q+ +Q KLV V+KV D E +ERE LIKV D + V G
Sbjct: 79 GDDKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQEIFQLVEIFRG 138
Query: 181 KVAAVQRNSSTVGIL-------------------EIARTGKTAFRR 207
K+ V R + + I EIARTG A R
Sbjct: 139 KIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184
>pdb|2F06|A Chain A, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
pdb|2F06|B Chain B, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
Length = 144
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 73 TNRSELRRISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQ 132
+N +++S+F+ ++SG + + EV A+ N+ +L ++ N D G+ +VS D+ +
Sbjct: 1 SNAXVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYK 60
Query: 133 QV 134
+
Sbjct: 61 AL 62
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 284 IVLQHPSDYNVMQDAIAILCE-NDNICCQVMKSYTKKQLITKLSRS----GRKVIIATDH 338
I++ SD VM+ A IL E + ++ ++ + + +++ G +VIIA
Sbjct: 18 IIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAG 77
Query: 339 GVGAFLDKIDLLASGSPVIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQ 396
G A L + + PVIGVPV+ S + G F V+M + V +N+AK A
Sbjct: 78 G-AAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGIL 136
Query: 397 AMIICDMVHP 406
A I + +P
Sbjct: 137 AASILGIKYP 146
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 265 LEAADSSIERVTDPRTDVIIVLQHPSDYNVMQDAIAILCEND-NICCQVMKSYTKKQLIT 323
L +A S++E V I++ SD+ M+ A A+L E + ++ ++ +
Sbjct: 8 LPSASSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLA 67
Query: 324 KLSRS----GRKVIIATDHGVGAFLDKIDLLASGSPVIGVPVRASGVTGF 369
+R+ G VIIA G AFL + + PV+GVPV + + G
Sbjct: 68 DYARTAAERGLNVIIAGAGGA-AFLPGMCAAWTRLPVLGVPVESRALKGM 116
>pdb|3BRS|A Chain A, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
pdb|3BRS|B Chain B, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
Length = 289
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 21/121 (17%)
Query: 187 RNSSTVGILEIARTGKTAFRRE---KLGASVPSSGFSAASYPD-------------LCET 230
R S +G++ + KTA RE K+G S S+ A Y D L +
Sbjct: 129 RKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKY 188
Query: 231 PTFGVLVGAGDRAFLSQTGAVERGPVYCAGSVPLLEAADSSIERVTDPRTDVI--IVLQH 288
P V+VG S TGA + L DSS+E++ + +V+Q
Sbjct: 189 PDISVMVGLNQ---YSATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQK 245
Query: 289 P 289
P
Sbjct: 246 P 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,749,269
Number of Sequences: 62578
Number of extensions: 475743
Number of successful extensions: 1367
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 18
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)