Query 015044
Match_columns 414
No_of_seqs 324 out of 2428
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2663 Acetolactate synthase, 100.0 9.5E-47 2.1E-51 361.9 5.1 221 28-262 15-261 (309)
2 COG0041 PurE Phosphoribosylcar 100.0 7.5E-44 1.6E-48 320.9 11.0 127 281-410 4-139 (162)
3 PRK11895 ilvH acetolactate syn 100.0 2.4E-42 5.2E-47 313.9 16.2 133 78-210 1-159 (161)
4 COG0440 IlvH Acetolactate synt 100.0 2.7E-42 5.9E-47 313.6 13.1 135 77-211 2-162 (163)
5 TIGR00119 acolac_sm acetolacta 100.0 1.4E-41 3E-46 307.8 16.1 131 79-209 1-157 (157)
6 CHL00100 ilvH acetohydroxyacid 100.0 1.9E-41 4.2E-46 311.4 12.9 136 78-213 1-162 (174)
7 TIGR01162 purE phosphoribosyla 100.0 2.8E-41 6.1E-46 305.6 9.5 126 282-410 1-135 (156)
8 PF00731 AIRC: AIR carboxylase 100.0 8.2E-40 1.8E-44 294.6 4.3 128 280-410 1-137 (150)
9 PLN02948 phosphoribosylaminoim 100.0 2E-35 4.3E-40 311.9 11.2 130 278-410 409-547 (577)
10 PRK13562 acetolactate synthase 100.0 1.4E-28 3.1E-33 202.9 10.0 77 78-154 1-83 (84)
11 PRK08178 acetolactate synthase 100.0 2.9E-28 6.2E-33 205.5 9.5 80 81-161 11-92 (96)
12 PRK06737 acetolactate synthase 99.9 3.8E-27 8.2E-32 191.2 10.1 73 78-150 1-76 (76)
13 COG1691 NCAIR mutase (PurE)-re 99.9 1.4E-25 3.1E-30 213.6 7.8 122 280-406 118-252 (254)
14 PRK11152 ilvM acetolactate syn 99.9 9.3E-25 2E-29 177.1 9.7 71 78-149 2-75 (76)
15 PF13710 ACT_5: ACT domain; PD 99.8 7.9E-21 1.7E-25 148.2 8.4 61 87-147 1-63 (63)
16 PF10369 ALS_ss_C: Small subun 99.6 9.4E-16 2E-20 123.6 3.7 52 157-208 1-75 (75)
17 KOG2835 Phosphoribosylamidoimi 99.5 5.6E-15 1.2E-19 149.3 0.7 126 280-408 209-341 (373)
18 COG4747 ACT domain-containing 98.9 6.1E-09 1.3E-13 92.2 9.4 93 78-194 3-95 (142)
19 cd04908 ACT_Bt0572_1 N-termina 98.8 1.5E-08 3.4E-13 78.0 7.6 49 78-126 1-49 (66)
20 COG3978 Acetolactate synthase 98.7 4.6E-08 1E-12 81.0 6.9 71 81-152 6-78 (86)
21 PF01842 ACT: ACT domain; Int 98.7 9.9E-08 2.1E-12 71.4 7.5 63 81-143 3-66 (66)
22 cd04878 ACT_AHAS N-terminal AC 98.5 1E-06 2.2E-11 65.8 9.3 67 81-147 3-71 (72)
23 cd04879 ACT_3PGDH-like ACT_3PG 98.5 6.1E-07 1.3E-11 66.7 7.7 68 81-150 2-71 (71)
24 PF13291 ACT_4: ACT domain; PD 98.4 2.3E-06 5.1E-11 67.9 9.6 67 81-148 9-79 (80)
25 cd04901 ACT_3PGDH C-terminal A 98.4 8.1E-07 1.8E-11 67.6 5.5 68 81-150 2-69 (69)
26 cd04903 ACT_LSD C-terminal ACT 98.3 3.1E-06 6.7E-11 63.3 7.6 68 81-150 2-71 (71)
27 cd04874 ACT_Af1403 N-terminal 98.3 7.2E-06 1.6E-10 61.6 9.1 68 81-149 3-71 (72)
28 PRK06349 homoserine dehydrogen 98.3 2.3E-06 5E-11 88.4 8.1 67 81-147 351-419 (426)
29 cd04889 ACT_PDH-BS-like C-term 98.2 3.1E-06 6.8E-11 62.8 6.4 49 81-129 1-50 (56)
30 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.2 4.7E-06 1E-10 63.3 7.5 68 81-148 3-73 (79)
31 cd04888 ACT_PheB-BS C-terminal 98.2 7.7E-06 1.7E-10 63.3 8.7 70 81-150 3-75 (76)
32 cd04902 ACT_3PGDH-xct C-termin 98.1 7.8E-06 1.7E-10 62.5 7.0 69 81-151 2-72 (73)
33 PRK08577 hypothetical protein; 98.1 2E-05 4.4E-10 69.4 9.7 70 81-150 59-132 (136)
34 cd04877 ACT_TyrR N-terminal AC 98.1 2.5E-05 5.5E-10 61.5 9.1 70 80-151 2-71 (74)
35 cd04876 ACT_RelA-SpoT ACT dom 98.0 5E-05 1.1E-09 54.4 8.8 68 81-148 1-70 (71)
36 PRK04435 hypothetical protein; 97.9 9E-05 2E-09 66.8 10.1 71 81-151 72-145 (147)
37 cd04905 ACT_CM-PDT C-terminal 97.9 8.7E-05 1.9E-09 59.2 8.9 63 81-143 4-71 (80)
38 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 0.00015 3.2E-09 56.1 9.9 67 81-148 2-71 (74)
39 cd04869 ACT_GcvR_2 ACT domains 97.9 4E-05 8.7E-10 60.4 6.9 61 81-141 2-69 (81)
40 cd04883 ACT_AcuB C-terminal AC 97.9 6.7E-05 1.5E-09 57.6 7.6 59 80-140 3-63 (72)
41 cd04884 ACT_CBS C-terminal ACT 97.9 7.9E-05 1.7E-09 58.1 8.1 64 81-145 2-70 (72)
42 cd04880 ACT_AAAH-PDT-like ACT 97.8 0.00016 3.4E-09 56.9 8.8 66 81-146 2-72 (75)
43 PRK00194 hypothetical protein; 97.8 2.8E-05 6E-10 63.1 4.7 68 81-148 6-75 (90)
44 cd04909 ACT_PDH-BS C-terminal 97.7 0.00012 2.5E-09 56.2 7.1 59 81-140 4-64 (69)
45 cd04882 ACT_Bt0572_2 C-termina 97.7 0.00011 2.4E-09 54.9 6.2 46 81-126 2-49 (65)
46 cd04886 ACT_ThrD-II-like C-ter 97.7 0.00017 3.7E-09 53.9 7.2 61 81-141 1-67 (73)
47 cd04872 ACT_1ZPV ACT domain pr 97.7 5.6E-05 1.2E-09 61.4 4.4 66 81-148 4-73 (88)
48 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00016 3.4E-09 56.8 6.7 61 81-141 2-66 (74)
49 cd04873 ACT_UUR-ACR-like ACT d 97.6 0.0003 6.4E-09 53.1 7.8 58 81-138 3-66 (70)
50 cd02116 ACT ACT domains are co 97.6 0.00038 8.2E-09 47.1 7.1 57 81-138 1-59 (60)
51 cd04870 ACT_PSP_1 CT domains f 97.6 0.00017 3.6E-09 57.1 6.1 63 81-143 2-65 (75)
52 PF13740 ACT_6: ACT domain; PD 97.6 0.0003 6.5E-09 56.1 7.3 61 81-141 5-65 (76)
53 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.0007 1.5E-08 51.7 7.9 61 81-141 3-69 (70)
54 cd04926 ACT_ACR_4 C-terminal 97.4 0.00077 1.7E-08 53.2 7.8 44 81-124 4-47 (72)
55 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0011 2.3E-08 52.2 7.5 60 81-140 4-71 (73)
56 cd04925 ACT_ACR_2 ACT domain-c 97.2 0.0017 3.7E-08 51.6 7.4 61 81-141 3-71 (74)
57 cd04893 ACT_GcvR_1 ACT domains 97.2 0.0011 2.5E-08 53.0 6.3 61 81-141 4-64 (77)
58 cd04904 ACT_AAAH ACT domain of 97.2 0.0028 6E-08 50.5 8.3 67 81-147 3-72 (74)
59 cd04927 ACT_ACR-like_2 Second 97.0 0.0044 9.5E-08 49.8 8.2 60 81-140 3-69 (76)
60 COG4492 PheB ACT domain-contai 97.0 0.0041 8.9E-08 56.6 8.5 71 81-151 75-148 (150)
61 COG1707 ACT domain-containing 96.9 0.0046 1E-07 58.4 8.6 77 81-158 5-83 (218)
62 PRK11589 gcvR glycine cleavage 96.8 0.0059 1.3E-07 57.7 8.9 116 78-201 5-129 (190)
63 PRK13011 formyltetrahydrofolat 96.8 0.006 1.3E-07 60.7 9.2 103 76-193 3-114 (286)
64 PRK06027 purU formyltetrahydro 96.8 0.005 1.1E-07 61.2 8.1 102 77-193 3-114 (286)
65 PRK11790 D-3-phosphoglycerate 96.7 0.0033 7.2E-08 65.2 6.6 69 80-150 340-408 (409)
66 cd04930 ACT_TH ACT domain of t 96.6 0.011 2.4E-07 51.7 8.1 67 81-147 44-113 (115)
67 cd04931 ACT_PAH ACT domain of 96.5 0.014 3E-07 49.1 7.9 60 81-140 17-80 (90)
68 cd04928 ACT_TyrKc Uncharacteri 96.5 0.016 3.4E-07 46.7 7.9 45 80-124 3-48 (68)
69 cd04895 ACT_ACR_1 ACT domain-c 96.3 0.018 3.8E-07 46.8 7.3 59 81-139 4-69 (72)
70 PRK11092 bifunctional (p)ppGpp 96.3 0.017 3.8E-07 64.1 9.7 68 81-150 629-700 (702)
71 PRK11589 gcvR glycine cleavage 96.3 0.0081 1.8E-07 56.7 6.1 63 81-143 98-167 (190)
72 TIGR00655 PurU formyltetrahydr 96.3 0.025 5.3E-07 56.3 9.4 99 81-194 3-110 (280)
73 cd04929 ACT_TPH ACT domain of 96.2 0.025 5.4E-07 45.7 7.5 60 81-140 3-65 (74)
74 PRK10872 relA (p)ppGpp synthet 96.1 0.022 4.8E-07 63.7 9.1 70 81-150 669-741 (743)
75 TIGR00691 spoT_relA (p)ppGpp s 96.1 0.027 5.9E-07 62.3 9.5 67 81-148 613-682 (683)
76 TIGR00719 sda_beta L-serine de 96.0 0.015 3.3E-07 55.1 6.4 53 81-133 151-207 (208)
77 PRK13010 purU formyltetrahydro 96.0 0.053 1.1E-06 54.3 10.4 106 74-194 3-119 (289)
78 cd04896 ACT_ACR-like_3 ACT dom 96.0 0.024 5.2E-07 46.4 6.5 60 81-140 3-70 (75)
79 PRK13581 D-3-phosphoglycerate 95.9 0.016 3.6E-07 61.8 6.5 70 81-150 455-524 (526)
80 cd04897 ACT_ACR_3 ACT domain-c 95.7 0.034 7.3E-07 45.5 6.5 61 81-141 4-71 (75)
81 PRK11899 prephenate dehydratas 95.6 0.054 1.2E-06 54.0 8.5 66 81-146 197-267 (279)
82 cd04891 ACT_AK-LysC-DapG-like_ 95.3 0.074 1.6E-06 38.2 6.4 51 85-137 8-59 (61)
83 cd04935 ACT_AKiii-DAPDC_1 ACT 95.1 0.092 2E-06 42.2 6.9 57 85-145 11-72 (75)
84 cd04871 ACT_PSP_2 ACT domains 95.1 0.027 5.8E-07 46.3 3.9 63 81-143 2-74 (84)
85 PRK07334 threonine dehydratase 95.1 0.1 2.2E-06 53.8 8.9 61 81-141 329-395 (403)
86 COG2716 GcvR Glycine cleavage 95.1 0.019 4E-07 54.1 3.2 66 81-147 95-168 (176)
87 COG0317 SpoT Guanosine polypho 95.1 0.088 1.9E-06 58.7 8.8 67 81-149 630-700 (701)
88 PRK06382 threonine dehydratase 95.0 0.082 1.8E-06 54.6 8.0 61 81-141 333-399 (406)
89 TIGR01327 PGDH D-3-phosphoglyc 94.8 0.049 1.1E-06 58.3 5.8 68 81-150 454-523 (525)
90 TIGR01127 ilvA_1Cterm threonin 94.7 0.11 2.4E-06 52.8 8.0 62 80-141 307-374 (380)
91 PRK06545 prephenate dehydrogen 94.7 0.086 1.9E-06 53.4 7.2 63 81-144 293-357 (359)
92 PRK06635 aspartate kinase; Rev 94.6 0.11 2.3E-06 53.2 7.7 103 85-198 270-374 (404)
93 cd04885 ACT_ThrD-I Tandem C-te 94.6 0.16 3.4E-06 39.5 6.9 59 81-140 1-61 (68)
94 TIGR00656 asp_kin_monofn aspar 94.1 0.16 3.5E-06 51.9 7.7 101 81-194 263-366 (401)
95 cd04913 ACT_AKii-LysC-BS-like_ 94.1 0.17 3.6E-06 38.0 5.8 42 85-126 9-51 (75)
96 COG4747 ACT domain-containing 94.1 0.17 3.8E-06 45.6 6.7 56 81-140 72-128 (142)
97 PRK08818 prephenate dehydrogen 94.0 0.14 3E-06 53.0 7.0 48 81-128 298-347 (370)
98 cd04912 ACT_AKiii-LysC-EC-like 94.0 0.27 5.9E-06 38.9 7.1 52 85-140 11-67 (75)
99 COG0077 PheA Prephenate dehydr 93.7 0.32 6.9E-06 48.9 8.7 71 78-148 193-269 (279)
100 PRK08210 aspartate kinase I; R 93.6 0.5 1.1E-05 48.5 10.2 94 81-194 274-368 (403)
101 PRK10622 pheA bifunctional cho 93.6 0.28 6.2E-06 51.0 8.4 63 81-143 300-367 (386)
102 cd04932 ACT_AKiii-LysC-EC_1 AC 93.4 0.26 5.5E-06 39.8 6.2 56 85-144 11-71 (75)
103 COG2150 Predicted regulator of 93.3 0.22 4.8E-06 46.6 6.3 67 81-149 96-166 (167)
104 PRK11898 prephenate dehydratas 93.3 0.33 7.1E-06 48.3 7.9 63 81-143 199-267 (283)
105 PRK08198 threonine dehydratase 93.0 0.4 8.7E-06 49.2 8.4 62 80-141 329-396 (404)
106 cd04890 ACT_AK-like_1 ACT doma 92.9 0.31 6.8E-06 36.5 5.6 49 86-138 11-61 (62)
107 PRK03059 PII uridylyl-transfer 92.8 0.26 5.5E-06 56.0 7.2 64 81-144 789-856 (856)
108 PRK05092 PII uridylyl-transfer 92.6 0.3 6.6E-06 55.8 7.5 63 81-143 846-915 (931)
109 cd04934 ACT_AK-Hom3_1 CT domai 92.2 0.39 8.5E-06 38.6 5.6 55 86-144 12-69 (73)
110 PRK03381 PII uridylyl-transfer 92.0 0.35 7.6E-06 54.3 6.9 59 81-141 602-665 (774)
111 PRK12483 threonine dehydratase 91.9 1.5 3.1E-05 47.6 11.2 105 81-198 348-471 (521)
112 TIGR01268 Phe4hydrox_tetr phen 91.6 0.65 1.4E-05 49.4 8.0 62 81-142 19-84 (436)
113 PLN02317 arogenate dehydratase 91.6 0.83 1.8E-05 47.8 8.6 63 81-143 286-367 (382)
114 cd04906 ACT_ThrD-I_1 First of 91.5 0.91 2E-05 36.9 7.1 72 81-156 4-78 (85)
115 TIGR01270 Trp_5_monoox tryptop 91.3 0.69 1.5E-05 49.5 7.8 68 81-148 34-105 (464)
116 PF04350 PilO: Pilus assembly 91.3 0.5 1.1E-05 40.9 5.8 66 87-152 51-121 (144)
117 cd04936 ACT_AKii-LysC-BS-like_ 90.6 1.3 2.9E-05 32.3 6.8 50 85-140 10-59 (63)
118 cd04933 ACT_AK1-AT_1 ACT domai 90.5 0.9 1.9E-05 37.3 6.2 52 85-140 11-70 (78)
119 PRK05092 PII uridylyl-transfer 90.3 0.76 1.6E-05 52.6 7.6 121 81-201 735-877 (931)
120 TIGR01693 UTase_glnD [Protein- 90.3 0.88 1.9E-05 51.4 8.0 60 81-140 782-847 (850)
121 cd04892 ACT_AK-like_2 ACT doma 90.2 1.3 2.9E-05 31.8 6.4 51 86-140 11-61 (65)
122 PRK07431 aspartate kinase; Pro 89.4 1.3 2.8E-05 48.0 8.1 98 85-194 278-377 (587)
123 COG0527 LysC Aspartokinases [A 89.3 2.4 5.2E-05 45.1 9.9 92 87-194 319-412 (447)
124 PF13840 ACT_7: ACT domain ; P 89.1 1.4 2.9E-05 34.4 6.0 52 81-139 9-64 (65)
125 cd08170 GlyDH Glycerol dehydro 89.0 0.87 1.9E-05 45.8 6.1 82 280-363 23-111 (351)
126 PRK00275 glnD PII uridylyl-tra 88.8 1.1 2.4E-05 51.2 7.4 62 81-142 817-885 (895)
127 cd04919 ACT_AK-Hom3_2 ACT doma 88.7 1.3 2.8E-05 33.3 5.5 50 86-139 12-61 (66)
128 TIGR01693 UTase_glnD [Protein- 88.6 1.1 2.3E-05 50.8 7.1 123 81-203 671-815 (850)
129 cd04922 ACT_AKi-HSDH-ThrA_2 AC 88.6 1.3 2.8E-05 33.0 5.4 49 86-138 12-60 (66)
130 cd08171 GlyDH-like2 Glycerol d 88.3 0.79 1.7E-05 46.2 5.3 82 280-363 23-112 (345)
131 cd04916 ACT_AKiii-YclM-BS_2 AC 88.3 1.9 4E-05 32.1 6.1 40 86-127 12-51 (66)
132 PRK05007 PII uridylyl-transfer 88.0 1.5 3.2E-05 50.2 7.8 117 81-199 704-840 (884)
133 PRK03381 PII uridylyl-transfer 87.8 1.6 3.5E-05 49.1 7.9 36 81-116 710-745 (774)
134 PRK01759 glnD PII uridylyl-tra 86.7 2 4.2E-05 49.1 7.7 120 81-200 680-816 (854)
135 PRK05007 PII uridylyl-transfer 86.6 1.8 3.9E-05 49.5 7.4 62 81-142 811-878 (884)
136 cd04868 ACT_AK-like ACT domain 86.5 4.2 9.1E-05 28.5 6.8 46 87-136 12-57 (60)
137 PRK09423 gldA glycerol dehydro 86.2 1.9 4.2E-05 43.8 6.8 82 280-363 30-118 (366)
138 cd04924 ACT_AK-Arch_2 ACT doma 86.1 1.9 4.2E-05 31.9 5.1 51 86-140 12-62 (66)
139 PRK03059 PII uridylyl-transfer 86.0 2.1 4.5E-05 48.9 7.5 60 81-140 681-747 (856)
140 PRK00275 glnD PII uridylyl-tra 85.7 2.2 4.7E-05 48.9 7.5 61 81-141 707-776 (895)
141 cd08549 G1PDH_related Glycerol 84.9 1.4 3E-05 44.4 5.0 80 281-363 26-114 (332)
142 COG3830 ACT domain-containing 84.6 1.6 3.4E-05 37.4 4.3 67 81-149 6-80 (90)
143 cd04911 ACT_AKiii-YclM-BS_1 AC 84.5 2.9 6.2E-05 34.6 5.7 58 85-146 11-71 (76)
144 PRK04374 PII uridylyl-transfer 84.4 2.4 5.2E-05 48.6 7.0 60 81-140 693-757 (869)
145 KOG2663 Acetolactate synthase, 84.4 0.22 4.8E-06 49.9 -1.0 41 174-214 247-287 (309)
146 PRK04374 PII uridylyl-transfer 84.2 2.7 5.8E-05 48.2 7.3 62 81-142 799-866 (869)
147 cd08550 GlyDH-like Glycerol_de 84.0 1.6 3.4E-05 44.1 4.9 81 281-363 24-111 (349)
148 cd04923 ACT_AK-LysC-DapG-like_ 84.0 4.5 9.7E-05 29.5 6.1 38 85-126 10-47 (63)
149 cd04921 ACT_AKi-HSDH-ThrA-like 83.9 4 8.7E-05 31.8 6.2 52 85-138 11-64 (80)
150 cd04914 ACT_AKi-DapG-BS_1 ACT 83.8 3.1 6.7E-05 32.6 5.4 38 85-126 9-46 (67)
151 COG0788 PurU Formyltetrahydrof 83.5 2.6 5.7E-05 42.6 6.1 63 81-143 10-76 (287)
152 PRK09084 aspartate kinase III; 83.5 7.2 0.00016 41.2 9.7 90 87-195 318-414 (448)
153 PRK15385 magnesium transport p 83.5 7.8 0.00017 38.1 9.2 69 81-149 145-220 (225)
154 cd04937 ACT_AKi-DapG-BS_2 ACT 83.4 3.9 8.4E-05 31.2 5.8 49 86-140 12-60 (64)
155 PRK08961 bifunctional aspartat 83.4 6.6 0.00014 44.8 10.0 91 86-195 333-428 (861)
156 cd08551 Fe-ADH iron-containing 83.4 1.6 3.5E-05 44.1 4.7 81 281-363 25-132 (370)
157 cd08182 HEPD Hydroxyethylphosp 83.3 1.6 3.6E-05 44.2 4.7 63 281-345 25-93 (367)
158 cd08173 Gro1PDH Sn-glycerol-1- 83.0 2.5 5.4E-05 42.5 5.8 80 281-363 27-112 (339)
159 PLN02551 aspartokinase 83.0 8.4 0.00018 41.8 10.1 95 87-201 378-481 (521)
160 cd08195 DHQS Dehydroquinate sy 82.8 1.8 3.9E-05 43.7 4.8 80 281-362 26-120 (345)
161 PRK09034 aspartate kinase; Rev 82.8 6.2 0.00014 41.7 8.9 97 87-199 320-420 (454)
162 PRK00843 egsA NAD(P)-dependent 82.6 2.2 4.7E-05 43.3 5.3 80 281-363 36-121 (350)
163 PRK06291 aspartate kinase; Pro 82.5 4.2 9.2E-05 43.0 7.5 95 87-194 333-427 (465)
164 TIGR00657 asp_kinases aspartat 82.4 7.1 0.00015 40.8 9.1 94 89-198 315-412 (441)
165 cd08174 G1PDH-like Glycerol-1- 82.3 3.1 6.7E-05 41.6 6.2 77 281-363 27-109 (331)
166 PF10741 T2SM_b: Type II secre 81.9 7.1 0.00015 33.2 7.4 65 89-153 16-85 (110)
167 PLN02550 threonine dehydratase 81.8 10 0.00022 42.0 10.3 113 81-198 420-541 (591)
168 cd07766 DHQ_Fe-ADH Dehydroquin 80.9 2.7 5.9E-05 41.7 5.2 80 281-363 25-114 (332)
169 cd08192 Fe-ADH7 Iron-containin 80.9 2.2 4.7E-05 43.4 4.6 61 281-341 26-93 (370)
170 cd04918 ACT_AK1-AT_2 ACT domai 80.9 6.8 0.00015 30.1 6.3 49 87-139 12-60 (65)
171 PRK09224 threonine dehydratase 80.7 17 0.00038 39.0 11.4 103 81-195 331-451 (504)
172 COG2716 GcvR Glycine cleavage 80.1 9.4 0.0002 36.4 8.1 110 78-194 2-118 (176)
173 cd08175 G1PDH Glycerol-1-phosp 79.5 2.3 5E-05 42.8 4.2 80 281-363 25-114 (348)
174 PRK01759 glnD PII uridylyl-tra 79.3 5.6 0.00012 45.4 7.6 60 81-140 786-851 (854)
175 PRK07431 aspartate kinase; Pro 79.1 6.4 0.00014 42.7 7.7 98 85-194 447-548 (587)
176 PRK09181 aspartate kinase; Val 79.1 12 0.00027 40.1 9.7 97 87-201 341-438 (475)
177 TIGR01357 aroB 3-dehydroquinat 79.1 2.9 6.3E-05 42.0 4.8 81 280-362 21-116 (344)
178 cd08176 LPO Lactadehyde:propan 78.4 6.7 0.00014 40.1 7.2 59 281-339 30-95 (377)
179 cd08193 HVD 5-hydroxyvalerate 78.0 3.1 6.8E-05 42.4 4.7 81 281-363 28-135 (376)
180 cd04915 ACT_AK-Ectoine_2 ACT d 78.0 8.7 0.00019 29.9 6.2 47 88-138 14-60 (66)
181 cd08178 AAD_C C-terminal alcoh 77.6 3.9 8.4E-05 42.2 5.3 62 280-341 22-90 (398)
182 cd08189 Fe-ADH5 Iron-containin 77.5 3.4 7.4E-05 42.2 4.8 65 281-345 28-99 (374)
183 cd08197 DOIS 2-deoxy-scyllo-in 77.2 3.9 8.5E-05 41.9 5.1 80 281-362 25-119 (355)
184 PRK00002 aroB 3-dehydroquinate 77.2 3.5 7.7E-05 41.8 4.8 82 280-363 32-128 (358)
185 cd04910 ACT_AK-Ectoine_1 ACT d 76.4 9.9 0.00021 31.0 6.2 52 88-143 14-65 (71)
186 PF02700 PurS: Phosphoribosylf 76.3 11 0.00024 31.2 6.6 53 81-138 3-65 (80)
187 cd08194 Fe-ADH6 Iron-containin 76.2 5.1 0.00011 40.9 5.6 60 281-340 25-91 (375)
188 cd08181 PPD-like 1,3-propanedi 76.1 3.8 8.2E-05 41.6 4.6 66 280-345 26-99 (357)
189 TIGR00656 asp_kin_monofn aspar 75.6 6.8 0.00015 40.1 6.4 54 81-140 340-396 (401)
190 cd08187 BDH Butanol dehydrogen 75.4 4.5 9.9E-05 41.4 5.0 61 280-340 29-97 (382)
191 cd08199 EEVS 2-epi-5-epi-valio 75.1 4.2 9.2E-05 41.6 4.7 81 280-362 27-123 (354)
192 cd08186 Fe-ADH8 Iron-containin 74.9 4.3 9.3E-05 41.6 4.7 62 280-341 27-96 (383)
193 PRK10820 DNA-binding transcrip 74.0 8.8 0.00019 41.2 7.0 69 80-151 2-71 (520)
194 cd08169 DHQ-like Dehydroquinat 73.8 9.3 0.0002 38.9 6.7 79 281-362 25-118 (344)
195 cd08183 Fe-ADH2 Iron-containin 73.6 4.7 0.0001 41.1 4.6 64 280-345 23-91 (374)
196 cd08172 GlyDH-like1 Glycerol d 73.0 2 4.4E-05 43.3 1.8 81 281-363 25-110 (347)
197 PRK08639 threonine dehydratase 72.6 17 0.00038 37.9 8.6 75 81-157 339-416 (420)
198 TIGR02079 THD1 threonine dehyd 72.0 16 0.00035 38.1 8.2 76 81-158 328-406 (409)
199 PRK09977 putative Mg(2+) trans 69.7 25 0.00054 34.2 8.3 65 81-148 147-213 (215)
200 TIGR01124 ilvA_2Cterm threonin 69.6 38 0.00083 36.6 10.5 105 81-191 328-442 (499)
201 COG1828 PurS Phosphoribosylfor 69.2 20 0.00042 30.4 6.5 55 78-137 1-61 (83)
202 COG2061 ACT-domain-containing 67.0 19 0.00041 34.0 6.5 61 78-138 4-69 (170)
203 PRK08526 threonine dehydratase 66.6 21 0.00046 37.3 7.7 61 81-141 329-395 (403)
204 COG2844 GlnD UTP:GlnB (protein 66.3 16 0.00035 42.1 7.1 43 81-123 794-838 (867)
205 cd08191 HHD 6-hydroxyhexanoate 65.9 8.7 0.00019 39.5 4.6 65 281-345 24-95 (386)
206 cd08185 Fe-ADH1 Iron-containin 65.3 17 0.00036 37.2 6.6 60 280-339 26-93 (380)
207 PLN02834 3-dehydroquinate synt 65.3 10 0.00022 40.2 5.1 81 280-362 101-198 (433)
208 PRK09466 metL bifunctional asp 65.2 41 0.00089 38.6 10.1 92 87-194 329-420 (810)
209 PRK02047 hypothetical protein; 64.0 62 0.0013 27.3 8.6 66 81-146 19-89 (91)
210 PF04455 Saccharop_dh_N: LOR/S 63.4 20 0.00043 31.3 5.7 56 89-144 15-74 (103)
211 cd08177 MAR Maleylacetate redu 61.1 6.6 0.00014 39.5 2.7 81 281-363 25-111 (337)
212 PRK05925 aspartate kinase; Pro 61.0 82 0.0018 33.6 10.9 95 88-202 311-409 (440)
213 TIGR01269 Tyr_3_monoox tyrosin 60.4 30 0.00065 37.4 7.4 70 80-149 39-115 (457)
214 PF13685 Fe-ADH_2: Iron-contai 59.1 4 8.6E-05 40.3 0.7 88 281-371 21-116 (250)
215 COG3199 Predicted inorganic po 58.7 19 0.00042 37.6 5.6 82 302-403 65-157 (355)
216 PRK06635 aspartate kinase; Rev 58.3 12 0.00027 38.3 4.2 50 85-140 350-399 (404)
217 PRK09436 thrA bifunctional asp 57.7 20 0.00044 40.9 6.1 101 81-194 318-425 (819)
218 PRK00907 hypothetical protein; 56.4 96 0.0021 26.5 8.5 65 81-145 20-89 (92)
219 PRK08210 aspartate kinase I; R 56.3 20 0.00044 36.9 5.3 54 81-140 342-398 (403)
220 cd04917 ACT_AKiii-LysC-EC_2 AC 55.7 51 0.0011 24.8 6.2 48 86-139 12-59 (64)
221 PF00465 Fe-ADH: Iron-containi 54.9 22 0.00048 35.9 5.3 58 281-340 23-88 (366)
222 cd01988 Na_H_Antiporter_C The 54.8 46 0.00099 27.2 6.3 50 293-342 56-107 (132)
223 PRK05783 hypothetical protein; 54.4 88 0.0019 26.4 7.9 56 81-141 5-67 (84)
224 PRK01372 ddl D-alanine--D-alan 54.4 13 0.00028 36.1 3.4 56 281-339 6-66 (304)
225 cd04920 ACT_AKiii-DAPDC_2 ACT 54.3 52 0.0011 25.2 6.1 47 86-138 11-57 (63)
226 COG2984 ABC-type uncharacteriz 52.6 67 0.0014 33.4 8.2 115 288-406 138-282 (322)
227 PRK04998 hypothetical protein; 50.2 1.4E+02 0.003 24.9 8.4 65 81-145 18-85 (88)
228 cd00860 ThrRS_anticodon ThrRS 49.1 89 0.0019 24.3 6.9 57 280-337 2-59 (91)
229 TIGR00657 asp_kinases aspartat 48.9 24 0.00053 36.9 4.6 49 85-139 388-436 (441)
230 PRK09860 putative alcohol dehy 48.8 36 0.00078 35.1 5.7 59 281-340 33-98 (383)
231 PRK14021 bifunctional shikimat 47.1 31 0.00068 37.4 5.2 79 281-362 211-304 (542)
232 PLN02551 aspartokinase 47.1 39 0.00085 36.8 5.9 56 81-138 448-507 (521)
233 PRK08841 aspartate kinase; Val 46.7 44 0.00096 34.9 6.1 56 81-142 321-376 (392)
234 TIGR01205 D_ala_D_alaTIGR D-al 46.5 35 0.00076 33.2 5.0 61 281-341 1-75 (315)
235 PRK10586 putative oxidoreducta 46.4 20 0.00044 36.9 3.5 79 281-363 36-120 (362)
236 cd00861 ProRS_anticodon_short 45.9 60 0.0013 25.7 5.5 57 280-336 2-61 (94)
237 cd03028 GRX_PICOT_like Glutare 45.3 60 0.0013 26.4 5.5 30 281-310 9-41 (90)
238 PRK00341 hypothetical protein; 44.9 1.8E+02 0.0039 24.6 8.4 64 81-145 20-88 (91)
239 PRK14569 D-alanyl-alanine synt 44.6 48 0.001 32.7 5.7 78 280-362 4-86 (296)
240 PRK12419 riboflavin synthase s 44.5 49 0.0011 31.0 5.4 68 278-355 9-85 (158)
241 cd08196 DHQS-like1 Dehydroquin 44.4 26 0.00057 36.0 4.0 78 281-362 21-111 (346)
242 cd08179 NADPH_BDH NADPH-depend 43.5 59 0.0013 33.3 6.3 59 281-339 25-91 (375)
243 TIGR02638 lactal_redase lactal 43.4 50 0.0011 33.9 5.8 59 281-339 31-96 (379)
244 PRK06291 aspartate kinase; Pro 42.6 47 0.001 35.2 5.6 57 81-141 401-460 (465)
245 cd08188 Fe-ADH4 Iron-containin 42.2 59 0.0013 33.4 6.1 59 281-339 30-95 (377)
246 PRK10624 L-1,2-propanediol oxi 41.4 56 0.0012 33.6 5.8 59 281-339 32-97 (382)
247 PRK09181 aspartate kinase; Val 41.4 70 0.0015 34.5 6.7 45 81-127 405-451 (475)
248 PRK09034 aspartate kinase; Rev 41.4 53 0.0012 34.8 5.8 55 81-139 388-445 (454)
249 cd00859 HisRS_anticodon HisRS 41.4 1.3E+02 0.0029 22.7 6.7 56 281-336 3-58 (91)
250 PF08753 NikR_C: NikR C termin 41.3 1.9E+02 0.0042 23.4 9.4 69 81-149 4-74 (78)
251 PLN02828 formyltetrahydrofolat 41.3 81 0.0017 31.7 6.7 85 95-194 1-96 (268)
252 KOG2797 Prephenate dehydratase 41.1 61 0.0013 33.9 5.9 33 81-113 284-316 (377)
253 TIGR00302 phosphoribosylformyl 40.4 1.2E+02 0.0025 24.8 6.4 53 81-138 3-65 (80)
254 COG3283 TyrR Transcriptional r 40.1 63 0.0014 34.8 5.9 70 80-152 2-72 (511)
255 cd08180 PDD 1,3-propanediol de 39.8 39 0.00085 33.9 4.3 82 281-363 24-119 (332)
256 COG0527 LysC Aspartokinases [A 39.0 65 0.0014 34.6 6.0 47 85-138 393-440 (447)
257 PF09383 NIL: NIL domain; Int 37.7 43 0.00092 26.4 3.4 24 174-197 51-75 (76)
258 cd01989 STK_N The N-terminal d 37.0 1.4E+02 0.003 25.3 6.7 48 295-342 67-116 (146)
259 TIGR00365 monothiol glutaredox 36.7 72 0.0016 26.6 4.8 30 281-310 13-45 (97)
260 PRK13805 bifunctional acetalde 36.6 66 0.0014 36.9 5.9 61 280-340 481-550 (862)
261 PF13399 LytR_C: LytR cell env 36.5 1.2E+02 0.0025 24.5 5.9 58 81-139 4-65 (90)
262 PF01709 Transcrip_reg: Transc 36.1 72 0.0016 31.3 5.3 60 88-149 172-231 (234)
263 PF03129 HGTP_anticodon: Antic 36.0 1E+02 0.0022 24.6 5.4 55 282-336 2-59 (94)
264 PRK00227 glnD PII uridylyl-tra 35.9 1E+02 0.0022 35.0 7.2 64 81-145 549-620 (693)
265 PRK06203 aroB 3-dehydroquinate 35.6 51 0.0011 34.4 4.5 80 281-362 44-146 (389)
266 PF04028 DUF374: Domain of unk 35.1 1.7E+02 0.0037 23.9 6.6 54 280-337 10-67 (74)
267 COG4026 Uncharacterized protei 35.0 1.3E+02 0.0028 30.3 6.8 56 280-337 7-66 (290)
268 cd08190 HOT Hydroxyacid-oxoaci 34.8 1E+02 0.0022 32.2 6.6 59 281-339 25-90 (414)
269 KOG3820 Aromatic amino acid hy 33.6 1.2E+02 0.0027 32.6 6.8 62 81-142 39-103 (461)
270 PF00585 Thr_dehydrat_C: C-ter 33.5 1.6E+02 0.0035 24.6 6.3 72 81-156 13-87 (91)
271 PF09383 NIL: NIL domain; Int 33.5 1.3E+02 0.0028 23.6 5.5 52 90-142 17-70 (76)
272 PRK11914 diacylglycerol kinase 33.4 1.2E+02 0.0027 29.8 6.6 64 286-353 19-84 (306)
273 PRK00061 ribH 6,7-dimethyl-8-r 33.3 1.4E+02 0.003 27.7 6.5 111 277-404 10-150 (154)
274 TIGR01506 ribC_arch riboflavin 33.0 80 0.0017 29.5 4.8 96 292-404 12-130 (151)
275 cd03027 GRX_DEP Glutaredoxin ( 32.6 1.2E+02 0.0025 23.3 5.1 20 291-310 10-29 (73)
276 PRK15454 ethanol dehydrogenase 32.2 89 0.0019 32.5 5.6 60 281-341 51-117 (395)
277 PRK05974 phosphoribosylformylg 30.9 1.6E+02 0.0034 24.0 5.8 53 81-138 3-65 (80)
278 COG0337 AroB 3-dehydroquinate 30.9 82 0.0018 33.2 5.0 88 272-362 27-129 (360)
279 COG1454 EutG Alcohol dehydroge 30.7 1.4E+02 0.0031 31.5 6.8 60 281-341 31-97 (377)
280 PRK06455 riboflavin synthase; 30.3 1.1E+02 0.0025 28.6 5.4 91 281-388 3-100 (155)
281 PF03927 NapD: NapD protein; 29.8 2.9E+02 0.0063 22.6 7.2 65 81-149 6-71 (79)
282 PRK14571 D-alanyl-alanine synt 29.7 69 0.0015 31.3 4.1 58 281-340 2-64 (299)
283 COG2515 Acd 1-aminocyclopropan 29.2 1E+02 0.0022 32.1 5.3 69 293-364 132-218 (323)
284 COG2263 Predicted RNA methylas 28.8 1.3E+02 0.0027 29.5 5.5 70 252-335 91-166 (198)
285 PF02016 Peptidase_S66: LD-car 28.5 57 0.0012 32.4 3.3 61 282-343 1-75 (284)
286 PRK11175 universal stress prot 28.3 1.8E+02 0.0038 28.0 6.6 46 298-343 228-275 (305)
287 PRK13337 putative lipid kinase 28.0 1.5E+02 0.0033 29.2 6.2 63 287-353 13-77 (304)
288 PRK14421 acylphosphatase; Prov 27.9 87 0.0019 27.0 3.9 37 115-151 39-75 (99)
289 cd00858 GlyRS_anticodon GlyRS 27.8 2.2E+02 0.0047 24.3 6.4 55 280-336 27-84 (121)
290 PRK14444 acylphosphatase; Prov 27.8 83 0.0018 26.4 3.7 37 114-150 38-74 (92)
291 PRK14429 acylphosphatase; Prov 27.4 94 0.002 25.9 3.9 38 114-151 36-73 (90)
292 PRK14435 acylphosphatase; Prov 27.2 74 0.0016 26.6 3.3 35 117-151 39-73 (90)
293 PRK14451 acylphosphatase; Prov 27.2 82 0.0018 26.3 3.6 38 114-151 37-74 (89)
294 PRK15138 aldehyde reductase; P 27.2 1E+02 0.0022 32.0 5.0 57 280-339 30-94 (387)
295 PRK09436 thrA bifunctional asp 27.0 1.1E+02 0.0024 35.2 5.6 68 81-150 399-471 (819)
296 PRK14423 acylphosphatase; Prov 26.9 1.1E+02 0.0023 25.7 4.2 37 115-151 40-76 (92)
297 TIGR03702 lip_kinase_YegS lipi 26.9 2.5E+02 0.0053 27.6 7.4 63 287-353 8-72 (293)
298 PRK14449 acylphosphatase; Prov 26.6 1.1E+02 0.0025 25.4 4.3 37 115-151 38-74 (90)
299 TIGR00114 lumazine-synth 6,7-d 26.2 71 0.0015 29.1 3.2 65 281-355 2-75 (138)
300 cd08198 DHQS-like2 Dehydroquin 26.1 1E+02 0.0023 32.2 4.9 81 280-362 31-134 (369)
301 PRK15424 propionate catabolism 25.9 92 0.002 34.2 4.6 105 286-404 19-132 (538)
302 PF10096 DUF2334: Uncharacteri 25.8 2.2E+02 0.0047 27.8 6.7 47 289-335 12-74 (243)
303 PRK13055 putative lipid kinase 25.5 1.9E+02 0.004 29.3 6.4 64 286-353 13-79 (334)
304 PRK00861 putative lipid kinase 25.5 1.9E+02 0.0041 28.4 6.3 64 286-354 13-78 (300)
305 COG0371 GldA Glycerol dehydrog 25.3 55 0.0012 34.4 2.6 81 281-363 32-118 (360)
306 PRK14425 acylphosphatase; Prov 25.0 1.1E+02 0.0023 25.9 3.9 38 114-151 40-77 (94)
307 TIGR00300 conserved hypothetic 24.9 1.6E+02 0.0035 31.6 5.9 54 89-142 15-72 (407)
308 COG1635 THI4 Ribulose 1,5-bisp 24.7 99 0.0021 31.2 4.1 44 294-337 81-131 (262)
309 COG0054 RibH Riboflavin syntha 24.4 50 0.0011 30.9 1.9 66 280-355 13-87 (152)
310 PRK14430 acylphosphatase; Prov 24.4 1.1E+02 0.0023 25.8 3.8 38 114-151 38-75 (92)
311 PRK14445 acylphosphatase; Prov 24.1 99 0.0021 25.8 3.5 35 115-149 39-73 (91)
312 cd07943 DRE_TIM_HOA 4-hydroxy- 24.0 1.5E+02 0.0032 28.9 5.2 61 276-337 95-161 (263)
313 KOG1250 Threonine/serine dehyd 23.8 50 0.0011 35.6 2.0 64 81-144 376-444 (457)
314 PRK14433 acylphosphatase; Prov 23.4 99 0.0021 25.7 3.4 33 117-149 38-70 (87)
315 COG0695 GrxC Glutaredoxin and 23.1 2.2E+02 0.0048 22.9 5.3 31 288-318 7-38 (80)
316 KOG2835 Phosphoribosylamidoimi 22.9 86 0.0019 33.2 3.5 56 295-355 252-313 (373)
317 PRK14645 hypothetical protein; 22.6 2.8E+02 0.006 25.7 6.4 61 85-145 5-71 (154)
318 PRK14420 acylphosphatase; Prov 22.6 99 0.0021 25.7 3.2 34 116-149 38-71 (91)
319 COG2241 CobL Precorrin-6B meth 22.3 1.4E+02 0.003 29.2 4.6 77 253-337 68-148 (210)
320 cd03522 MoeA_like MoeA_like. T 22.2 2.7E+02 0.0058 28.6 6.8 47 298-345 184-234 (312)
321 PF06874 FBPase_2: Firmicute f 21.9 53 0.0012 36.9 1.9 60 291-355 507-571 (640)
322 TIGR00147 lipid kinase, YegS/R 21.9 2.7E+02 0.0059 27.0 6.6 73 287-363 13-93 (293)
323 PRK14448 acylphosphatase; Prov 21.8 1.2E+02 0.0027 25.3 3.7 36 116-151 38-73 (90)
324 PF14257 DUF4349: Domain of un 21.7 7.4E+02 0.016 24.0 9.5 68 81-148 54-124 (262)
325 KOG3857 Alcohol dehydrogenase, 21.6 1.5E+02 0.0033 31.7 5.0 62 281-343 72-140 (465)
326 PRK01002 nickel responsive reg 21.6 6.1E+02 0.013 23.0 8.8 68 81-149 60-130 (141)
327 PRK14440 acylphosphatase; Prov 21.4 1.2E+02 0.0025 25.5 3.4 36 115-150 38-73 (90)
328 cd01994 Alpha_ANH_like_IV This 21.4 3.1E+02 0.0068 25.8 6.7 59 283-345 91-151 (194)
329 PF12745 HGTP_anticodon2: Anti 21.3 3E+02 0.0065 27.7 6.9 60 278-337 4-65 (273)
330 PF13941 MutL: MutL protein 20.9 2.9E+02 0.0064 30.0 7.1 93 251-351 99-195 (457)
331 PRK15456 universal stress prot 20.7 2.1E+02 0.0045 24.4 4.9 25 317-341 92-117 (142)
332 PF06506 PrpR_N: Propionate ca 20.6 34 0.00075 31.3 0.1 92 302-403 3-101 (176)
333 cd06305 PBP1_methylthioribose_ 20.4 4E+02 0.0086 24.4 7.1 56 282-337 2-63 (273)
334 PRK14442 acylphosphatase; Prov 20.4 1.4E+02 0.003 25.1 3.6 36 115-150 39-74 (91)
335 PRK14436 acylphosphatase; Prov 20.1 1.5E+02 0.0032 24.9 3.8 36 116-151 40-75 (91)
336 PF04359 DUF493: Protein of un 20.0 3.2E+02 0.007 22.2 5.7 67 81-147 13-84 (85)
No 1
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-47 Score=361.86 Aligned_cols=221 Identities=36% Similarity=0.478 Sum_probs=196.0
Q ss_pred cccccccccccccc-chhhhhhhcc--ccCCCCcccccccC------Cc-cccCCCccccccE--EEEEEeCchhHHHHH
Q 015044 28 DSRKSYSFPARVPF-SLSNYKASSR--RAASKPVVCATIID------GA-FSFSSTNRSELRR--ISVFVRDESGVVDLI 95 (414)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~p~~~~~~~~------~i-~~~~~~~~~~Mkr--LSVlVeN~pGVLsRI 95 (414)
.|.+|+|||+.-+. ++++||+.|| +.++.|+.+.|.+. .| -.+|.+.+++.|| |++||+|+||+|+||
T Consensus 15 ~ss~~~~~~~sts~ts~i~yk~~h~~~~rp~~~~~~~p~~~~d~avS~ii~~tP~~~~qr~krHvinclVqnEpGvlsRi 94 (309)
T KOG2663|consen 15 ASSCRTMFPASTSSTSAIAYKQMHRHGTRPRLPTLDTPSANADSAVSSIISETPAPSRQRVKRHVINCLVQNEPGVLSRI 94 (309)
T ss_pred hhccceeeeccCcccchhhHHHHHhcCCCCCCceecCccccchHHHHHHhhcCCccccccccceeEEEEecCCchHHHHH
Confidence 46689999998874 7899999997 45567777777542 23 3588888888766 999999999999999
Q ss_pred HHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEEEecCcc--c
Q 015044 96 DEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIKVNADPK--F 171 (414)
Q Consensus 96 tgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiKV~~~~~--~ 171 (414)
+|+|++||||||||.||.||++.+ ||||+.|+|++++|.++||+||++|++|+||+++++|+|||||+||+.-.- -
T Consensus 95 sGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~e~~VeRELmlakvsllg~d~F 174 (309)
T KOG2663|consen 95 SGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTNEPIVERELMLAKVSLLGVDYF 174 (309)
T ss_pred HHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCCChHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999986 899999999999999999999999999999999999999999999986321 1
Q ss_pred c----------ccccCCHHHHHHHHHhhccCCcEEEecccceeeecccCCcCCCCCCccccCCCCcCCCCCccccccccc
Q 015044 172 C----------AEVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREKLGASVPSSGFSAASYPDLCETPTFGVLVGAGD 241 (414)
Q Consensus 172 r----------~EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~ 241 (414)
| .|+|||++ ++...|++|+|-|++|||. |+.|.+++...++|+|++++||++.+..+...+++..
T Consensus 175 ravd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allrlk~~~la~i~rlta~f~grvvdis~~s~i~elt- 249 (309)
T KOG2663|consen 175 RAVDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLRLKMGHLAPIWRLTAAFYGRVVDISETSCIVELT- 249 (309)
T ss_pred HhhhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHHHhhhccchHHHHhhhhccchhccccceeeeeec-
Confidence 2 29999999 7889999999999999999 9999999999999999999999999988888776654
Q ss_pred ccccCCCCCCCCCceeecCCC
Q 015044 242 RAFLSQTGAVERGPVYCAGSV 262 (414)
Q Consensus 242 ~~~~~~~~~~~~gdvy~v~~~ 262 (414)
+.+|||||++++
T Consensus 250 ---------a~p~rV~~fl~l 261 (309)
T KOG2663|consen 250 ---------AKPGRVYPFLPL 261 (309)
T ss_pred ---------cCCCcccccccc
Confidence 778999999885
No 2
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.5e-44 Score=320.90 Aligned_cols=127 Identities=30% Similarity=0.374 Sum_probs=123.9
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP 355 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~ 355 (414)
+|+|||||+|||++|++|+++|++|||+|+ +|.||| || ++|.++++++|++||||+| |.+|||| ||+|++|+
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA-GgAAHLP--GmvAa~T~ 80 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGA-GGAAHLP--GMVAAKTP 80 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecC-cchhhcc--hhhhhcCC
Confidence 899999999999999999999999999999 999999 88 8899999999999999999 9999999 99999999
Q ss_pred --EEEecCcCCCCCCcceee--ccCCCCCeEEEEecCCcchHHHHHHHHHhccCCCccc
Q 015044 356 --VIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQAMIICDMVHPGGRT 410 (414)
Q Consensus 356 --VIgVP~~~~~l~G~daLl--vqMP~GvpVatV~Id~~~nAA~~A~~IL~~~~~~~~~ 410 (414)
|||||+.+..|+|+|+|| ||||+|+|||||+|++++|||++|+|||++.|+++++
T Consensus 81 lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~ 139 (162)
T COG0041 81 LPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAE 139 (162)
T ss_pred CCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999875
No 3
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=2.4e-42 Score=313.95 Aligned_cols=133 Identities=47% Similarity=0.699 Sum_probs=128.0
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCch
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEP 154 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~ 154 (414)
|+| |+++++|+||+|+||+++|+||||||+||++++++++++ |||++++|++.++|+.|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 778 999999999999999999999999999999999998876 99999999999999999999999999999999999
Q ss_pred hhheeeeEEEEecCccccc-----------------------cccCCHHHHHHHHHhhccCCcEEEecccceeeecccC
Q 015044 155 VIERELMLIKVNADPKFCA-----------------------EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREKL 210 (414)
Q Consensus 155 ~V~REL~LiKV~~~~~~r~-----------------------EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~~ 210 (414)
.|+|||+|+||++++++|. |+||+++||++|+++|+||||+|++|||++||.||+.
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999887665 9999999999999999999999999999999999963
No 4
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-42 Score=313.64 Aligned_cols=135 Identities=49% Similarity=0.738 Sum_probs=130.0
Q ss_pred cccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCc
Q 015044 77 ELRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNE 153 (414)
Q Consensus 77 ~Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~ 153 (414)
.|+| ||++++|+||+|+||+|+|+||||||+||+|++||+++. |||++.||++.+||++|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 5888 999999999999999999999999999999999999986 9999999999999999999999999999999999
Q ss_pred hhhheeeeEEEEecCccccc-----------------------cccCCHHHHHHHHHhhccCCcEEEecccceeeecccC
Q 015044 154 PVIERELMLIKVNADPKFCA-----------------------EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREKL 210 (414)
Q Consensus 154 ~~V~REL~LiKV~~~~~~r~-----------------------EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~~ 210 (414)
++++|||+|+||++++..|. |+||+++|+++|+++|+||||+|++|||.+||.||+.
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999887765 9999999999999999999999999999999999976
Q ss_pred C
Q 015044 211 G 211 (414)
Q Consensus 211 ~ 211 (414)
.
T Consensus 162 ~ 162 (163)
T COG0440 162 K 162 (163)
T ss_pred C
Confidence 4
No 5
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=1.4e-41 Score=307.82 Aligned_cols=131 Identities=47% Similarity=0.716 Sum_probs=125.8
Q ss_pred cE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchh
Q 015044 79 RR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPV 155 (414)
Q Consensus 79 kr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~ 155 (414)
|| |+++++|+||+|+||+++|+||||||+||++++++++++ |||+|+++++.++|+.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 46 999999999999999999999999999999999998876 999999999999999999999999999999999999
Q ss_pred hheeeeEEEEecCccccc-----------------------cccCCHHHHHHHHHhhccCCcEEEecccceeeeccc
Q 015044 156 IERELMLIKVNADPKFCA-----------------------EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREK 209 (414)
Q Consensus 156 V~REL~LiKV~~~~~~r~-----------------------EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~ 209 (414)
|+|||+||||++++++|. |+||+++|+++|+++|+||||+|++|||.+||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 999999999999887765 999999999999999999999999999999999983
No 6
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=1.9e-41 Score=311.40 Aligned_cols=136 Identities=52% Similarity=0.817 Sum_probs=130.0
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCch
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEP 154 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~ 154 (414)
||| |+++++|+||+|+||+++|+||||||+||+++++++++. |||++.++++.++||.+||+||+||++|+++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 778 999999999999999999999999999999999999986 99999999888999999999999999999999999
Q ss_pred hhheeeeEEEEecCccccc-----------------------cccCCHHHHHHHHHhhccCCcEEEecccceeeecccCC
Q 015044 155 VIERELMLIKVNADPKFCA-----------------------EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREKLG 211 (414)
Q Consensus 155 ~V~REL~LiKV~~~~~~r~-----------------------EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~~~ 211 (414)
.|+|||+||||++++++|. |+||+++|+++|+++|+||||+|++|||.+||.|+++.
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 9999999999999887765 99999999999999999999999999999999998765
Q ss_pred cC
Q 015044 212 AS 213 (414)
Q Consensus 212 ~~ 213 (414)
..
T Consensus 161 ~~ 162 (174)
T CHL00100 161 NT 162 (174)
T ss_pred hH
Confidence 44
No 7
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=2.8e-41 Score=305.65 Aligned_cols=126 Identities=30% Similarity=0.341 Sum_probs=121.1
Q ss_pred EEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc-
Q 015044 282 VIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP- 355 (414)
Q Consensus 282 V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~- 355 (414)
|+|||||+||+++|+|+..+|++|||+|+ +|+|+| +| .+++++++++|.+||||+| |++|||| ||+||+|+
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~A-G~aa~Lp--gvva~~t~~ 77 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGA-GGAAHLP--GMVAALTPL 77 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeC-CccchhH--HHHHhccCC
Confidence 68999999999999999999999999999 999999 77 7788888889999999999 9999999 99999999
Q ss_pred -EEEecCcCCCCCCcceee--ccCCCCCeEEEEecCCcchHHHHHHHHHhccCCCccc
Q 015044 356 -VIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQAMIICDMVHPGGRT 410 (414)
Q Consensus 356 -VIgVP~~~~~l~G~daLl--vqMP~GvpVatV~Id~~~nAA~~A~~IL~~~~~~~~~ 410 (414)
|||||++++.++|+|+|| +|||+|+||+||+|||++|||++|+|||+++|++++.
T Consensus 78 PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~ 135 (156)
T TIGR01162 78 PVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAE 135 (156)
T ss_pred CEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHH
Confidence 999999988899999999 9999999999999999999999999999999998864
No 8
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=8.2e-40 Score=294.59 Aligned_cols=128 Identities=28% Similarity=0.326 Sum_probs=109.4
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
++|+|||||+||+++++|+.++|++||++|+ +|+|+| +| .+++++++.+|++|||++| |++|||| ||+||+|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~A-G~~a~Lp--gvva~~t 77 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVA-GMSAALP--GVVASLT 77 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEE-ESS--HH--HHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEEC-CCcccch--hhheecc
Confidence 4899999999999999999999999999999 999999 77 5677777778899999999 9999999 9999999
Q ss_pred c--EEEecCcCCCCCCcceee--ccCCCCCeEEEEecCCcchHHHHHHHHHhccCCCccc
Q 015044 355 P--VIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQAMIICDMVHPGGRT 410 (414)
Q Consensus 355 ~--VIgVP~~~~~l~G~daLl--vqMP~GvpVatV~Id~~~nAA~~A~~IL~~~~~~~~~ 410 (414)
+ |||||++++.+.|+|+|+ +|||+|+||+||+|||++|||++|+|||++.|++++.
T Consensus 78 ~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~ 137 (150)
T PF00731_consen 78 TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELRE 137 (150)
T ss_dssp SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHH
Confidence 9 999999999999999999 9999999999999999999999999999999998875
No 9
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=2e-35 Score=311.91 Aligned_cols=130 Identities=28% Similarity=0.296 Sum_probs=123.3
Q ss_pred CCCeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCcccc
Q 015044 278 PRTDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLAS 352 (414)
Q Consensus 278 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg 352 (414)
+.++|+|||||+||+++|++|.++|++|||+|+ +|+|+| +| .+++++++.+|++||||+| ||+|||| ||+||
T Consensus 409 ~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~a-g~~~~l~--~~~a~ 485 (577)
T PLN02948 409 GTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGA-GGAAHLP--GMVAS 485 (577)
T ss_pred CCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEc-Cccccch--HHHhh
Confidence 346899999999999999999999999999999 999999 77 6677888889999999999 9999999 99999
Q ss_pred Ccc--EEEecCcCCCCCCcceee--ccCCCCCeEEEEecCCcchHHHHHHHHHhccCCCccc
Q 015044 353 GSP--VIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQAMIICDMVHPGGRT 410 (414)
Q Consensus 353 ~T~--VIgVP~~~~~l~G~daLl--vqMP~GvpVatV~Id~~~nAA~~A~~IL~~~~~~~~~ 410 (414)
+|+ |||||++++.++|+|+|| ||||+|+||+||+|||++|||++|+|||++.|++++.
T Consensus 486 ~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~ 547 (577)
T PLN02948 486 MTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLD 547 (577)
T ss_pred ccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHH
Confidence 999 999999998999999999 9999999999999999999999999999999988753
No 10
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.95 E-value=1.4e-28 Score=202.93 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=73.1
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEEEE--ecC
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLKVE--DFS 151 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVikV~--dlt 151 (414)
||| ||++|+|+||||+||+++|+||||||+||+||+||++++ |||+++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 788 999999999999999999999999999999999999996 999997 99999999999999999999999 777
Q ss_pred Cch
Q 015044 152 NEP 154 (414)
Q Consensus 152 ~~~ 154 (414)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 643
No 11
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.95 E-value=2.9e-28 Score=205.51 Aligned_cols=80 Identities=30% Similarity=0.511 Sum_probs=76.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhhe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIER 158 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~R 158 (414)
||++|+|+||||+||+|||+||||||+||+||+|+++++ |||++. +++.++||+|||+||+||++|.++++++.|++
T Consensus 11 isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~~~~v~~ 89 (96)
T PRK08178 11 LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQSDPTMFN 89 (96)
T ss_pred EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCCchhHHH
Confidence 999999999999999999999999999999999999986 999998 57899999999999999999999999999999
Q ss_pred eee
Q 015044 159 ELM 161 (414)
Q Consensus 159 EL~ 161 (414)
|+.
T Consensus 90 e~~ 92 (96)
T PRK08178 90 KIA 92 (96)
T ss_pred HHH
Confidence 874
No 12
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.94 E-value=3.8e-27 Score=191.18 Aligned_cols=73 Identities=30% Similarity=0.558 Sum_probs=70.5
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|+| |+++|+|+||||+||+++|+||||||+||++|+||++++ |||++.|+++.++||.|||+||+||++|+++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 788 999999999999999999999999999999999999996 9999999999999999999999999999985
No 13
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.92 E-value=1.4e-25 Score=213.62 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=112.5
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-----eEeecCchHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-----QVMKSYTKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-----~V~SaH~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
.+|+|+++++||+|+++||..+++++|++.. .|++.|+.+.-+++++.++.+++|++| ||+++|| +|+||++
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvA-GMEGaLP--svvagLv 194 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVA-GMEGALP--SVVAGLV 194 (254)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEc-ccccchH--HHHHhcc
Confidence 4799999999999999999999999999855 789999998888888878899999999 9999999 9999999
Q ss_pred c--EEEecCcCC---CCCCcceee--ccCCCCCe-EEEEecCCcchHHHHHHHHHhccCC
Q 015044 355 P--VIGVPVRAS---GVTGFPHQF--VEMCPKHA-ILLVPVNDAKGAARQAMIICDMVHP 406 (414)
Q Consensus 355 ~--VIgVP~~~~---~l~G~daLl--vqMP~Gvp-VatV~Id~~~nAA~~A~~IL~~~~~ 406 (414)
. |||||++++ +++|+.+|| ||+|+ | |++||||||++||.+|+||++.-++
T Consensus 195 D~PVIavPTsVGYG~g~gGiaaLltMLqSCs--pGv~VVNIdNGfGAa~~A~~I~r~~~~ 252 (254)
T COG1691 195 DVPVIAVPTSVGYGAGGGGIAALLTMLQSCS--PGVGVVNIDNGFGAAVLAVQILRRIRK 252 (254)
T ss_pred CCCeEecccccccCcCCccHHHHHHHHHhcC--CCeEEEEccCchHHHHHHHHHHHHHHh
Confidence 8 999999985 578899999 99998 5 9999999999999999999987543
No 14
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.91 E-value=9.3e-25 Score=177.13 Aligned_cols=71 Identities=25% Similarity=0.424 Sum_probs=67.1
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|+| ||++|+|+||||+||+|+|+||||||+||++++|++++. |||+|. +++.++||.|||+||+||++|+.
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 577 999999999999999999999999999999999999986 888884 89999999999999999999985
No 15
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.84 E-value=7.9e-21 Score=148.16 Aligned_cols=61 Identities=52% Similarity=0.890 Sum_probs=56.4
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEE
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV 147 (414)
|+||+|+||+++|+||||||+||++++++++++ |||+++|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999997 9999999999999999999999999987
No 16
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.58 E-value=9.4e-16 Score=123.63 Aligned_cols=52 Identities=50% Similarity=0.713 Sum_probs=47.0
Q ss_pred heeeeEEEEecCccccc-----------------------cccCCHHHHHHHHHhhccCCcEEEecccceeeecc
Q 015044 157 ERELMLIKVNADPKFCA-----------------------EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRRE 208 (414)
Q Consensus 157 ~REL~LiKV~~~~~~r~-----------------------EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~ 208 (414)
+|||+||||++++++|. |+||+++|||+|+++|++|||+|++|||.+||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 69999999999776655 99999999999999999999999999999999997
No 17
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.48 E-value=5.6e-15 Score=149.34 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=115.2
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
..+.+.|++.+|..+|..+...++.++++++ .+.++| ++ ..|...+..+|.+++||.| |.++|+| +++++.+
T Consensus 209 ~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga-~~~~~~p--~~v~a~f 285 (373)
T KOG2835|consen 209 DNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGA-YKAGHEP--LMVDAEF 285 (373)
T ss_pred chhheEEcccCCcceeeeeeEEeccccCCccceEEEeecCchhHhhhhhhcccCceEEEEecc-CCCCCCh--hhHHhhc
Confidence 3588999999999999999999999999999 889999 44 5566667788999999999 9999999 9999999
Q ss_pred cEEEecCcCCCCCCcceee--ccCCCCCeEEEEecCCcchHHHHHHHHHhccCCCc
Q 015044 355 PVIGVPVRASGVTGFPHQF--VEMCPKHAILLVPVNDAKGAARQAMIICDMVHPGG 408 (414)
Q Consensus 355 ~VIgVP~~~~~l~G~daLl--vqMP~GvpVatV~Id~~~nAA~~A~~IL~~~~~~~ 408 (414)
.--|||+....+.|.|.+| ||||.|+||+||+|+++.|||++|++||+..|+-+
T Consensus 286 ~~~gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i 341 (373)
T KOG2835|consen 286 ERPGVPVVFVAVDGRDNLLSIVQMPNGVPVATVAVNNPENAALLAARILGLSNEMI 341 (373)
T ss_pred cccCcceeeeecccccccccceeccCCccccccccCCHHHHHHHHHHHHHhhhhHH
Confidence 9339999988999999999 99999999999999999999999999999988654
No 18
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.92 E-value=6.1e-09 Score=92.20 Aligned_cols=93 Identities=22% Similarity=0.393 Sum_probs=69.1
Q ss_pred ccEEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 78 LRRISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 78 MkrLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
.||||+|+||+||-|..++..++..|+||..++.++|.|+|+++++|+.+++.-.-+. +..++-
T Consensus 3 vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Le----------------e~gF~V 66 (142)
T COG4747 3 VKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLE----------------EAGFTV 66 (142)
T ss_pred eeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHH----------------HCCcEE
Confidence 4669999999999999999999999999999999999999999999998776555444 344444
Q ss_pred eeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 158 RELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 158 REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
||--.+-| |+-..|+-+....+.|..++|
T Consensus 67 r~~dVlaV--------EmeD~PG~l~~I~~vl~d~di 95 (142)
T COG4747 67 RETDVLAV--------EMEDVPGGLSRIAEVLGDADI 95 (142)
T ss_pred EeeeEEEE--------EecCCCCcHHHHHHHHhhcCc
Confidence 44444433 334445555555555555554
No 19
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.82 E-value=1.5e-08 Score=78.04 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=43.8
Q ss_pred ccEEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC
Q 015044 78 LRRISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG 126 (414)
Q Consensus 78 MkrLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g 126 (414)
||||++.++|+||+|++|+.+|+++|+||+|+.+.++++++.+.+.++.
T Consensus 1 ~~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~ 49 (66)
T cd04908 1 IKQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSD 49 (66)
T ss_pred CEEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECC
Confidence 5789999999999999999999999999999999888777667777743
No 20
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.69 E-value=4.6e-08 Score=80.96 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=65.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSN 152 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~ 152 (414)
+++.+..+|+.|.||.++-.+|||-+.+++.+..-|.+. +.++|++ ++.++.|..||+||.||..|+..-.
T Consensus 6 ldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~~ 78 (86)
T COG3978 6 LDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQS 78 (86)
T ss_pred EeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEeeh
Confidence 999999999999999999999999999999999888886 8888986 5699999999999999999987543
No 21
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.66 E-value=9.9e-08 Score=71.35 Aligned_cols=63 Identities=32% Similarity=0.574 Sum_probs=54.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cEEEEEEeCchhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GLFTIVVSGTDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~iiTIVV~gde~~veQl~kQL~KLid 143 (414)
|.+.++|+||+|.+|+.+|+++|+||.++....+.+. ..+.++...++...+++.+.|+++.+
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 7899999999999999999999999999999988874 34555566678889999999988753
No 22
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.50 E-value=1e-06 Score=65.83 Aligned_cols=67 Identities=55% Similarity=0.878 Sum_probs=55.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--EEEEEEeCchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTIVVSGTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTIVV~gde~~veQl~kQL~KLidVikV 147 (414)
|.+.+.|+||+|.+|+.+|++.|+||+++........+ .+.+.+......+++++++|.++-+|.+|
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 78999999999999999999999999999987652233 35555553337899999999999999987
No 23
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.49 E-value=6.1e-07 Score=66.71 Aligned_cols=68 Identities=21% Similarity=0.434 Sum_probs=58.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC--CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK--DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te--d~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.+.+.|++|+|++|+.+|+.+|+||.++.+...+ +...+++.++.. ..++++++|+++-+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 67899999999999999999999999999998765 333477777543 588999999999999999864
No 24
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.41 E-value=2.3e-06 Score=67.85 Aligned_cols=67 Identities=31% Similarity=0.496 Sum_probs=55.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E--EEEEEeCchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L--FTIVVSGTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i--iTIVV~gde~~veQl~kQL~KLidVikV~ 148 (414)
|.|.+.|+||+|+.|+.+++..|.||.++++....+.+ . +++.|. +-+.+++++++|+++-+|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-DLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-SHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-CHHHHHHHHHHHHCCCCeeEEE
Confidence 99999999999999999999999999999999875333 3 455554 6679999999999999999996
No 25
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.35 E-value=8.1e-07 Score=67.60 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=57.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|-+..+|+||+|++|+.+|++.|+||.+++...+...+++++.++.. .+++++++|.++-+|+.|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 56789999999999999999999999999876554444566666654 788999999999999999764
No 26
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=3.1e-06 Score=63.25 Aligned_cols=68 Identities=28% Similarity=0.432 Sum_probs=57.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC--CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK--DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te--d~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.+.+.|+||+|.+|+.+|++.|+||.++.+.... +.+.+.|.+++. .+++++++|+++-.|.+|..+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 67899999999999999999999999999987643 333466777654 788999999999999998753
No 27
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=7.2e-06 Score=61.59 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=57.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|.+.+.|+||+|++|+.+|++.++||.++...... +...+++.+++. +.++.+.++|++.-+|..|..
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 67889999999999999999999999999886543 333477778876 688899999999999999874
No 28
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.26 E-value=2.3e-06 Score=88.40 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=59.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cEEEEEEe-CchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GLFTIVVS-GTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~iiTIVV~-gde~~veQl~kQL~KLidVikV 147 (414)
|++.++|+||+|++|+++|+++|+||+|+...++++. ..++|+++ .++..++++++||+||.+|.+.
T Consensus 351 lRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 351 LRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred EEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 9999999999999999999999999999999876542 34777776 7889999999999999998654
No 29
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.24 E-value=3.1e-06 Score=62.84 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=41.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcEEEEEEeCchh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGLFTIVVSGTDR 129 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~iiTIVV~gde~ 129 (414)
|++.+.|+||.|.|++.+|+++|+||+++.+..++ +.+++.+.++..+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~ 50 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPER 50 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHH
Confidence 57899999999999999999999999999999887 55567777775443
No 30
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=4.7e-06 Score=63.32 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=56.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--EEEEEEe-CchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTIVVS-GTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTIVV~-gde~~veQl~kQL~KLidVikV~ 148 (414)
|.+.+.|+||+|++|+.+|++.|+||+++......+.+ .+++++. .+...+++++++|+++-+|..+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 78999999999999999999999999999886554323 3666553 56788999999999998887653
No 31
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=7.7e-06 Score=63.30 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=56.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cE--EEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~i--iTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.+...|+||+|++|+..+++.|.||++++.....+. .. +++.+.+.+..+++++++|.++-+|.+|+.+
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7899999999999999999999999999987432211 22 4555555555999999999999999999854
No 32
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.15 E-value=7.8e-06 Score=62.53 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=55.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--EEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+-+.+.|+||+|++|+.+|+++|+||.++.+.+.+..+ .+.+.++++ ....+.+.|.++-+|+.|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 45788999999999999999999999999988764334 466667663 3458888899999998888764
No 33
>PRK08577 hypothetical protein; Provisional
Probab=98.11 E-value=2e-05 Score=69.45 Aligned_cols=70 Identities=30% Similarity=0.357 Sum_probs=58.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--EEEEE--EeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTIV--VSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTIV--V~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.+.+.|+||+|+.|+.+|+..|+||.++.+......+ .++++ ++..+..+++++++|+++-+|..|...
T Consensus 59 I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 59 IELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred EEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 99999999999999999999999999999987655334 34444 444446799999999999999999854
No 34
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.10 E-value=2.5e-05 Score=61.53 Aligned_cols=70 Identities=10% Similarity=0.266 Sum_probs=58.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+|.|...|++|+|+.|+.+|+..|+||.++.+... ..-.+++.+. +-+.+++++++|.++-.|.+|+...
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 38899999999999999999999999999999654 2211566655 4567999999999999999998653
No 35
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.03 E-value=5e-05 Score=54.41 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=55.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcEEEEEEe-CchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGLFTIVVS-GTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~iiTIVV~-gde~~veQl~kQL~KLidVikV~ 148 (414)
|.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.+.++|.++-.|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46889999999999999999999999999987654 2233555554 45678999999999999998875
No 36
>PRK04435 hypothetical protein; Provisional
Probab=97.90 E-value=9e-05 Score=66.83 Aligned_cols=71 Identities=27% Similarity=0.323 Sum_probs=58.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cEE--EEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GLF--TIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~ii--TIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+ |+.+...+..+++|+.+|+++-.|.+|+-+.
T Consensus 72 L~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 72 LSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999999999999987533322 224 4445555568999999999999999998764
No 37
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.90 E-value=8.7e-05 Score=59.21 Aligned_cols=63 Identities=25% Similarity=0.377 Sum_probs=51.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cE--EEEEEeCc--hhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GL--FTIVVSGT--DRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~i--iTIVV~gd--e~~veQl~kQL~KLid 143 (414)
|.+.+.|+||.|.+|..+|+++|+||.|+..-+..+. .. +.+.+++. ++.++++.++|++..+
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 6778899999999999999999999999998887653 33 45556664 6778888888887544
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=0.00015 Score=56.14 Aligned_cols=67 Identities=10% Similarity=0.253 Sum_probs=55.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVikV~ 148 (414)
|.+.+.|+||.|++|+.++++.|.||.++...... .+. +++++. .+.+.++++++.|+++-+|.--+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 67899999999999999999999999999987654 343 555554 36778999999999999987543
No 39
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.90 E-value=4e-05 Score=60.39 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=47.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC----CcE--EEEEEeCchh-HHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD----KGL--FTIVVSGTDR-VLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted----~~i--iTIVV~gde~-~veQl~kQL~KL 141 (414)
|++...|+||.+++|+.+|+++|.||.++.....+. .+. |++.++.++. .+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999966552 244 6667765543 477777766554
No 40
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=6.7e-05 Score=57.60 Aligned_cols=59 Identities=31% Similarity=0.438 Sum_probs=45.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhc
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~K 140 (414)
++++.++|+||.|.+++.+|+++|+||+++........+. +.|.+++++ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence 4889999999999999999999999999998877654443 666666533 2355555544
No 41
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=7.9e-05 Score=58.09 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=48.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CC--cE--EEEEEeCchhHHHHHHHHHhcCccEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DK--GL--FTIVVSGTDRVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~--~i--iTIVV~gde~~veQl~kQL~KLidVi 145 (414)
+++.+.|+||.|.+++.+|++.|.||.|+...... +. .. +++.++. +..++.|.+.|++-.+|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~~ 70 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTVV 70 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccEE
Confidence 78999999999999999999999999999887652 22 23 4554543 334888888887765443
No 42
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.81 E-value=0.00016 Score=56.86 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=52.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC-CcE--EEEEEeC--chhHHHHHHHHHhcCccEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD-KGL--FTIVVSG--TDRVLQQVIEQLQKLVNVLK 146 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted-~~i--iTIVV~g--de~~veQl~kQL~KLidVik 146 (414)
+.+.++|+||.|++|...|+++|+||.+|..-+... .+- +-|-++| ++..++++.+.|++..+-++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~~ 72 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDVK 72 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeeE
Confidence 456778999999999999999999999997777665 332 5566777 57889999999988655433
No 43
>PRK00194 hypothetical protein; Validated
Probab=97.80 E-value=2.8e-05 Score=63.13 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=52.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--hHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--RVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~~veQl~kQL~KLidVikV~ 148 (414)
|++...|+||++++|+++|+.+|+||..+......+.-.++++++.+. ..++.+.+.|+++-+...++
T Consensus 6 ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 6 ITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 999999999999999999999999999998776433223666666543 34678888777777766555
No 44
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.75 E-value=0.00012 Score=56.19 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=47.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC--CCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK--DKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te--d~~iiTIVV~gde~~veQl~kQL~K 140 (414)
+++.++|+||.|.+++++|++.|+||+++...... ..+.+.++++.++ ..+++.+-|++
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 78899999999999999999999999999877753 2456777787543 56666666654
No 45
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00011 Score=54.91 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=38.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--EEEEEEeC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTIVVSG 126 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTIVV~g 126 (414)
|.+.+.|+||.|.+++++|++.|+||.++........+ .+++.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 67899999999999999999999999999886665334 36666665
No 46
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00017 Score=53.88 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=46.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC---CcE--EEEEEeC-chhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD---KGL--FTIVVSG-TDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted---~~i--iTIVV~g-de~~veQl~kQL~KL 141 (414)
|.+.+.|+||.|.+|+.+|+..|.||.++......+ .+. +.+.++. +.+.++++++.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999876532 333 4444443 346788888888764
No 47
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=5.6e-05 Score=61.45 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=52.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCch--hHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTD--RVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde--~~veQl~kQL~KLidVikV~ 148 (414)
|++...|+||++++|++.|+++|.||..+..... .+. ++++++.+. ..++++.+.|++|-+-..++
T Consensus 4 l~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 4 ITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 8899999999999999999999999999988763 333 677777554 45888888888777554433
No 48
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00016 Score=56.82 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=47.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchh--HHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDR--VLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~--~veQl~kQL~KL 141 (414)
|++...|+||++++|++.|+.+|+||..+........+. +++.++.+.. .++++.+.|+++
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 688999999999999999999999999998875444444 5666665542 578888777665
No 49
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.64 E-value=0.0003 Score=53.06 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=44.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch------hHHHHHHHHH
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD------RVLQQVIEQL 138 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde------~~veQl~kQL 138 (414)
|.|.+.|+||+|.+|+++|+..|+||.++.+...++....++.+.+.+ +..+++.+-|
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l 66 (70)
T cd04873 3 VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999999999999987766444566665443 4455554444
No 50
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.59 E-value=0.00038 Score=47.14 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=45.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHH
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQL 138 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL 138 (414)
|++...|++|.+.+|++.|+++|+||.++........+. +++.++..+ .+++++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 478899999999999999999999999999977654433 666666544 666666655
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.00017 Score=57.14 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=47.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh-HHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR-VLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~-~veQl~kQL~KLid 143 (414)
+++.-.|+||.+++|++.|+.+|.||+.+........=.+.+.++.++. .++++.+.|+++-+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999975544322125566666554 67888887776643
No 52
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.57 E-value=0.0003 Score=56.12 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=50.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KL 141 (414)
|+++-.|+||++++|++.+++.|.||+.+......+.=.+.+.++++++..+++.+.|+++
T Consensus 5 Itv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 5 ITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 8999999999999999999999999999998877754447777888888899999988876
No 53
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.0007 Score=51.66 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC------chhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG------TDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g------de~~veQl~kQL~KL 141 (414)
|.|.+.|+||+|++|+++|+..|+||.++.+....+....++.+.+ +++..+++.+.|.+.
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999766553344554431 234566666666543
No 54
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.00077 Score=53.23 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=36.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVV 124 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV 124 (414)
+.|.+.|+||+|.+|+++|++.|+||.|..+...++..+.++.|
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 78999999999999999999999999999987654432345544
No 55
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0011 Score=52.24 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=44.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---C----chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---G----TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---g----de~~veQl~kQL~K 140 (414)
|.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-. =+..|. + +++..+++.+.|.+
T Consensus 4 i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 889999999999999999999999999999987754433 222222 1 34556667766654
No 56
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0017 Score=51.64 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=45.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEe----C----chhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVS----G----TDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~----g----de~~veQl~kQL~KL 141 (414)
|+++..|+||+|.+|++.|++.|.||.+-.+....+.-.-++.|. + +++..+++.+.|.+.
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999985522212333332 2 345677888777664
No 57
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.17 E-value=0.0011 Score=53.00 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=46.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KL 141 (414)
|++...|+||..++|+++++.+|.||..+......+.-.|++.++.+....+++.+.|+++
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 64 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL 64 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence 7899999999999999999999999999998873322236677765554566666655443
No 58
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.15 E-value=0.0028 Score=50.51 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=53.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeCchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSGTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~gde~~veQl~kQL~KLidVikV 147 (414)
|.+.+.|+||.|.+|...|+.+|+|+.+|---|..... + +=|-++|+++.++++.++|.+...=+++
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~~ 72 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVNI 72 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEEE
Confidence 45566899999999999999999999999998877543 2 5566777778899999999886654443
No 59
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0044 Score=49.76 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=44.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEE-eC-----chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVV-SG-----TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV-~g-----de~~veQl~kQL~K 140 (414)
|.|+..|+||+|.+|++.|++.|+||.+-.+..|.+.-. =+..| +. +++..+++.+.|.+
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988766543 22333 22 22445556666554
No 60
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.96 E-value=0.0041 Score=56.55 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=59.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEee-ecCCCcEEEEE--EeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVS-GNKDKGLFTIV--VSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg-~Ted~~iiTIV--V~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
|++.++++.|.|+++....++++.||-+++-. +-+...-+||. .++-+..++.|+..|.|+-.|.+|+-..
T Consensus 75 L~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 75 LSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred EEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 99999999999999999999999999988876 33333335555 4577889999999999999999998653
No 61
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.90 E-value=0.0046 Score=58.37 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=60.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC--CcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhhe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD--KGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIER 158 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted--~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~R 158 (414)
||+.++|+||+|..++|+.+.+|.||.-....-..| .+.+-+-++|-+ ..+.+...|...-.|+.|+.+..-+.++-
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~iyG 83 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEEIYG 83 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHHHhC
Confidence 999999999999999999999999998665543333 234666666644 57889999999999999998776555443
No 62
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.84 E-value=0.0059 Score=57.69 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=80.5
Q ss_pred ccE---EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccE----EEEEec
Q 015044 78 LRR---ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNV----LKVEDF 150 (414)
Q Consensus 78 Mkr---LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidV----ikV~dl 150 (414)
|++ |+++-.|+||..++|+.+++..|.||+......-...--|.+.|++....+.++...|.++.+- +.+...
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~ 84 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT 84 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence 644 9999999999999999999999999998888766654346666788888888888887776632 223332
Q ss_pred CCchhhheeee-EEEEecCccccccccCCHHHHHHHHHhhccCCc-EEEeccc
Q 015044 151 SNEPVIERELM-LIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIARTG 201 (414)
Q Consensus 151 t~~~~V~REL~-LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEiaRTG 201 (414)
.... .++.. .+.|.+.. -..|+=+..+-+.|..+|| ++-.+|-
T Consensus 85 ~~~~--~~~~~~~~~v~v~G------~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 85 TARP--RPAMPATVWVQVEV------ADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred cccc--cccCCceEEEEEEE------CCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 2211 12221 23343332 2457888889999999997 5555554
No 63
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.81 E-value=0.006 Score=60.75 Aligned_cols=103 Identities=12% Similarity=0.076 Sum_probs=69.3
Q ss_pred ccccE--EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCc-hhHHHHHHHHHhcCcc----EEE
Q 015044 76 SELRR--ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGT-DRVLQQVIEQLQKLVN----VLK 146 (414)
Q Consensus 76 ~~Mkr--LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gd-e~~veQl~kQL~KLid----Vik 146 (414)
.+|++ |++...|+||+.++||++|+.+|+||+.++...+...++ |++.+..+ ...++++...|+++-+ .+.
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~ 82 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFGMQWE 82 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCcEEE
Confidence 36777 999999999999999999999999999999985555555 44455422 2236777766655533 233
Q ss_pred EEecCCchhhheeeeEEEEecCccccccccCCHHHHHHHHHhhccCC
Q 015044 147 VEDFSNEPVIERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVG 193 (414)
Q Consensus 147 V~dlt~~~~V~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fG 193 (414)
+...+.. . ||.. =.+|....+.++++..+.-.
T Consensus 83 i~~~~~~---~------ri~v------l~Sg~g~nl~al~~~~~~~~ 114 (286)
T PRK13011 83 LHDPAAR---P------KVLI------MVSKFDHCLNDLLYRWRIGE 114 (286)
T ss_pred EeecccC---c------eEEE------EEcCCcccHHHHHHHHHcCC
Confidence 3322221 1 1211 35788888899988776543
No 64
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.75 E-value=0.005 Score=61.19 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=68.4
Q ss_pred cccE--EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeC--chhHHHHHHHHHhcCccEEE----
Q 015044 77 ELRR--ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSG--TDRVLQQVIEQLQKLVNVLK---- 146 (414)
Q Consensus 77 ~Mkr--LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~g--de~~veQl~kQL~KLidVik---- 146 (414)
.|.+ |++...|+||..+.|+++|+.+|.||+.++.......+. |++.++. ....++++...|+++-+=..
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~i~ 82 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMDWR 82 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence 4566 999999999999999999999999999999987444444 4555554 12346677766655543222
Q ss_pred EEecCCchhhheeeeEEEEecCccccccccCCHHHHHHHHHhhccCC
Q 015044 147 VEDFSNEPVIERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVG 193 (414)
Q Consensus 147 V~dlt~~~~V~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fG 193 (414)
+.+.... . ||.. =++|.-..+.++++..+.-.
T Consensus 83 l~~~~~~---~------ri~v------l~Sg~gsnl~al~~~~~~~~ 114 (286)
T PRK06027 83 LLDSAER---K------RVVI------LVSKEDHCLGDLLWRWRSGE 114 (286)
T ss_pred EcccccC---c------EEEE------EEcCCCCCHHHHHHHHHcCC
Confidence 2221111 1 2211 46788888999998877643
No 65
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.69 E-value=0.0033 Score=65.18 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=57.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
+|.+.=+|+||++++|+.++++.|+||..+.+....+..++.|-+++ ..-+.++++|+++-+|++|..+
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 38899999999999999999999999999999776655567776765 3456888899999999998754
No 66
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.59 E-value=0.011 Score=51.72 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=54.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeCchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSGTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~gde~~veQl~kQL~KLidVikV 147 (414)
|.+.+.|+||.|.+|...|+.+|+|+.+|---++.... + +=|-++|..+.+++++++|.+...-++|
T Consensus 44 lifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 44 LLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 77777999999999999999999999999998875443 3 5566777777788888888886664444
No 67
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.014 Score=49.08 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=48.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeCc-hhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSGT-DRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~gd-e~~veQl~kQL~K 140 (414)
|.+.+.|+||.|.+|...|+++|+|+.+|.--++.... + +=|-++|. +..++++.+.|.+
T Consensus 17 lif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 17 LIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 77777999999999999999999999999998876543 2 44556664 6677788887776
No 68
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.016 Score=46.67 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=38.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEE
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVV 124 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV 124 (414)
+|.|+..|+||++++|++.|++.|+||.+-.+..+.+.-. -+.+|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V 48 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVV 48 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEE
Confidence 3889999999999999999999999999999988766543 34444
No 69
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.018 Score=46.80 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEE-eC----chhHHHHHHHHHh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVV-SG----TDRVLQQVIEQLQ 139 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV-~g----de~~veQl~kQL~ 139 (414)
|.|...|+||+|.+|+..|++-|++|.+-.++.-.+.-. |-+.- +| +++..+.|.++|.
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 789999999999999999999999999988876655433 44432 22 3566777777764
No 70
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.33 E-value=0.017 Score=64.06 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=57.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE----EEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL----FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i----iTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.|.+.|++|+|+.|+.+++..+.||.++++.... .+. |+|.|. +-+.+++|+++|.++-+|.+|...
T Consensus 629 i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~ieV~-~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 629 IKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD-GRVYSAFIRLTAR-DRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC-CCEEEEEEEEEEC-CHHHHHHHHHHHhCCCCcceEEEc
Confidence 99999999999999999999999999999975443 333 444454 567999999999999999999864
No 71
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.31 E-value=0.0081 Score=56.75 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=46.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC--Cc--E--EEEEEeCc-hhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD--KG--L--FTIVVSGT-DRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted--~~--i--iTIVV~gd-e~~veQl~kQL~KLid 143 (414)
+++...|+||.+.+||.+|+.||+||++|....... .+ + +++.+.-+ +..++++..+|+++-+
T Consensus 98 v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 98 VQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCT 167 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875442 22 2 55555532 2346666666665544
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.25 E-value=0.025 Score=56.33 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCch--hHHHHHHHHHhc----Ccc-EEEEEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTD--RVLQQVIEQLQK----LVN-VLKVEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde--~~veQl~kQL~K----Lid-VikV~dlt 151 (414)
|++...|+||..++||++++++|.||..++....++.+. |++.++.++ ...+++...|+. -.+ -+++.+.+
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i~l~~~~ 82 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELILAD 82 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 788999999999999999999999999999887766676 666666543 346666655544 222 22333221
Q ss_pred CchhhheeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 152 NEPVIERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 152 ~~~~V~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
+ ..| |.+ =++|....+.++++..+.-.+
T Consensus 83 ~---~~k------i~v------l~Sg~g~nl~~l~~~~~~g~l 110 (280)
T TIGR00655 83 K---LKR------VAI------LVSKEDHCLGDLLWRWYSGEL 110 (280)
T ss_pred C---CcE------EEE------EEcCCChhHHHHHHHHHcCCC
Confidence 1 112 111 468889999999998875433
No 73
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.025 Score=45.73 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=48.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeCchhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~gde~~veQl~kQL~K 140 (414)
|.+.+.|+||.|.++...|+++|+|+..|.--+..... + +=|-++|+...++++.+.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 44556899999999999999999999999998876553 2 556677877778888877766
No 74
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.10 E-value=0.022 Score=63.66 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=58.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVikV~dl 150 (414)
|.|.+.|++|+|+.|+.+++.-+.||.++++......+. +++++. .+-+.+++++++|.++-+|++|+..
T Consensus 669 I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 669 VRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 999999999999999999999999999999864432333 444443 4677999999999999999999864
No 75
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.06 E-value=0.027 Score=62.29 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=56.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVikV~ 148 (414)
|.|.+.|++|+|+.|+.++++-+.||.++++.... .+. +++.+. .+-+.+..|+.+|.++-+|++|.
T Consensus 613 I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 613 INIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 99999999999999999999999999999996543 333 444432 36779999999999999999885
No 76
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.02 E-value=0.015 Score=55.09 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeC--chhHHHH
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSG--TDRVLQQ 133 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~g--de~~veQ 133 (414)
|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+. |.|.+++ +++.+++
T Consensus 151 L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 151 ILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 667778999999999999999999999999999876664 6677765 4555554
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.01 E-value=0.053 Score=54.28 Aligned_cols=106 Identities=8% Similarity=0.127 Sum_probs=66.5
Q ss_pred ccccccE--EEEEEeCchhHHHHHHHHHhccCcceeeEEeee-cCCCcE-EEEEEe--Cc-hhHHHHHHHHH---hcCcc
Q 015044 74 NRSELRR--ISVFVRDESGVVDLIDEVFARRGYNIESLAVSG-NKDKGL-FTIVVS--GT-DRVLQQVIEQL---QKLVN 143 (414)
Q Consensus 74 ~~~~Mkr--LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~-Ted~~i-iTIVV~--gd-e~~veQl~kQL---~KLid 143 (414)
++++|.+ |++...|+||+.++||+++++.|.||..++... +....+ |.+.+. +. +..++++...| .+-.+
T Consensus 3 ~~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 3 AKPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred ccccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4557887 999999999999999999999999999999863 222233 343333 21 22344444433 33333
Q ss_pred -EEEEEecCCchhhheeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 144 -VLKVEDFSNEPVIERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 144 -VikV~dlt~~~~V~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
-+++...++. .| +++ =++|....+.++++..+.-.+
T Consensus 83 l~~~i~~~~~~---~k-iav-----------l~Sg~g~nl~al~~~~~~~~l 119 (289)
T PRK13010 83 MQWAIHPDGQR---PK-VVI-----------MVSKFDHCLNDLLYRWRMGEL 119 (289)
T ss_pred CeEEEecCCCC---eE-EEE-----------EEeCCCccHHHHHHHHHCCCC
Confidence 2333332221 12 111 468888999999998775443
No 78
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.98 E-value=0.024 Score=46.40 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEee--ecCCCc--EEEEEEeC----chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVS--GNKDKG--LFTIVVSG----TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg--~Ted~~--iiTIVV~g----de~~veQl~kQL~K 140 (414)
|.|...|+||+|.+|+..|++-|++|.+--++ .-.+.- .|-+..+| +++..+.|...|.+
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999998887 433332 25554444 44556677766644
No 79
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.86 E-value=0.016 Score=61.80 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=56.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|-+.-.|+||++.+|+.+|++.++||.++.++..+..+.-.++++-|+..-+.+.++|.++.+|.+|..+
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 5556689999999999999999999999999987766653334444455667888888889898888765
No 80
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.75 E-value=0.034 Score=45.55 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=47.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEE-EeC----chhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIV-VSG----TDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIV-V~g----de~~veQl~kQL~KL 141 (414)
+.|...|+||+|.+|+..|++-|++|.+-.++...+... |-|. .+| ++...+.|.+.|...
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999987665543 4443 234 566677777777654
No 81
>PRK11899 prephenate dehydratase; Provisional
Probab=95.58 E-value=0.054 Score=53.97 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-c-E-EEEEEeC--chhHHHHHHHHHhcCccEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-G-L-FTIVVSG--TDRVLQQVIEQLQKLVNVLK 146 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~-i-iTIVV~g--de~~veQl~kQL~KLidVik 146 (414)
|.+.+.|+||.|.+|.+.|++||+|+.+|.--|+.+. + + |-|-++| ++..+++..++|++.-.-++
T Consensus 197 l~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~k 267 (279)
T PRK11899 197 FVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR 267 (279)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEE
Confidence 7778899999999999999999999999999988654 3 2 5566666 45667888887776555333
No 82
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.31 E-value=0.074 Score=38.24 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=37.3
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEeCchhHHHHHHHH
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVSGTDRVLQQVIEQ 137 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~gde~~veQl~kQ 137 (414)
..|++|++.++...|++.|+||+.++.+.+.+... ++++++. +..++..+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~ 59 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI 59 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence 47899999999999999999999998876544323 6777663 334444433
No 83
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.11 E-value=0.092 Score=42.24 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=43.9
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch-----hHHHHHHHHHhcCccEE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD-----RVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde-----~~veQl~kQL~KLidVi 145 (414)
..+.+|++.+|.+.|++.|+|++-++.+. .-+.+++..++ +.+++|.+.|+++-+|.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v~ 72 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK 72 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEEE
Confidence 35789999999999999999999997522 33666666443 37889999999955544
No 84
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.09 E-value=0.027 Score=46.28 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=48.0
Q ss_pred EEEEEeC-chhHHHHHHHHHhccCcceeeEEeeecC-------C-Cc-EEEEEEeCchhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRD-ESGVVDLIDEVFARRGYNIESLAVSGNK-------D-KG-LFTIVVSGTDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN-~pGVLsRItgLFsRRGyNIeSLtVg~Te-------d-~~-iiTIVV~gde~~veQl~kQL~KLid 143 (414)
++++-.+ ++|.+++|+.+++.+|+||+.+.-=... . +- .|.+.+++.+...+.+.++|.++-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5778888 9999999999999999999988762111 1 12 3677788877788888888776543
No 85
>PRK07334 threonine dehydratase; Provisional
Probab=95.08 E-value=0.1 Score=53.80 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=49.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC---CCcE--EEEEEe-CchhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK---DKGL--FTIVVS-GTDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te---d~~i--iTIVV~-gde~~veQl~kQL~KL 141 (414)
|.|.+.|++|+|.+|+.+++..++||.+++..... +.+. +.+++. .+.+.+++++++|++.
T Consensus 329 l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 329 LRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999986431 2233 444443 3677899999999886
No 86
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.07 E-value=0.019 Score=54.11 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=47.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc----EE----EEEEeCchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG----LF----TIVVSGTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~----ii----TIVV~gde~~veQl~kQL~KLidVikV 147 (414)
+.+-+.++||.+++++.+|.++|+||++|..-....++ .+ |+-+.. --.+.+++.+++.|-|=+.|
T Consensus 95 v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 95 VYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNV 168 (176)
T ss_pred EEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999987654443 23 333322 23466777776665544433
No 87
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.06 E-value=0.088 Score=58.66 Aligned_cols=67 Identities=25% Similarity=0.406 Sum_probs=58.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE----EEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL----FTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i----iTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|.|...|++|+|+.|+.++++-+.||.+++...+ +.+. |+|.|. +-..+.+|+.||..+-+|+.|..
T Consensus 630 i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 630 IEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred EEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999999999999999999999999999999876 3332 455555 67789999999999999999874
No 88
>PRK06382 threonine dehydratase; Provisional
Probab=95.01 E-value=0.082 Score=54.56 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=47.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEee----ecCC-CcEEEEEEeCc-hhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVS----GNKD-KGLFTIVVSGT-DRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg----~Ted-~~iiTIVV~gd-e~~veQl~kQL~KL 141 (414)
|.+.+.|+||.|.+++.+|.+.|.||.++... +.++ ...+++.++.. .+..++|.+.|++.
T Consensus 333 l~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 333 IECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred EEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999876 3332 22366766643 34566888888664
No 89
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.78 E-value=0.049 Score=58.28 Aligned_cols=68 Identities=19% Similarity=0.400 Sum_probs=53.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
|-+.-.|+||++.+|+.+|++.++||-++.++..+..+. |.|.++ +..-+.+.++|.++.+|.+|..+
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 555557899999999999999999999999998876665 444444 44557777788888888877654
No 90
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.74 E-value=0.11 Score=52.77 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=48.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEee---ecCCCcE--EEEEEeC-chhHHHHHHHHHhcC
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVS---GNKDKGL--FTIVVSG-TDRVLQQVIEQLQKL 141 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg---~Ted~~i--iTIVV~g-de~~veQl~kQL~KL 141 (414)
+|++.+.|+||.|.+++.++++.|.||.++... .+.+.+. +++.++. +++..++|++.|++.
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 399999999999999999999999999999776 2222233 6666653 456778888888664
No 91
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.70 E-value=0.086 Score=53.41 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=51.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC--cEEEEEEeCchhHHHHHHHHHhcCccE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK--GLFTIVVSGTDRVLQQVIEQLQKLVNV 144 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~--~iiTIVV~gde~~veQl~kQL~KLidV 144 (414)
|.|.+.|+||.|.+|+.++++.|+||+.|.+-++.+. |.++|.+.. ++..++..+.|++-..+
T Consensus 293 ~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (359)
T PRK06545 293 LYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWTY 357 (359)
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999776543 568888873 45666777777665443
No 92
>PRK06635 aspartate kinase; Reviewed
Probab=94.63 E-value=0.11 Score=53.19 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=72.0
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCC-CcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhheeeeEE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKD-KGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLI 163 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted-~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~REL~Li 163 (414)
..|+||+|.||...|++.|+||+.++.+.+++ +.-++++++.+ ..++..+.|+++.+-+.+. .=.+.+.++++
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~----~i~~~~~ia~i 343 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD--DLEKALELLEEVKDEIGAE----SVTYDDDIAKV 343 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcc----eEEEcCCeEEE
Confidence 67899999999999999999999998887665 34477777643 3455555566532111110 11245677888
Q ss_pred EEecCccccccccCCHHHHHHHHHhhccCCc-EEEe
Q 015044 164 KVNADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIA 198 (414)
Q Consensus 164 KV~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEia 198 (414)
.|... ++.+.++-+..+++.|..+|| +++.
T Consensus 344 svvG~-----~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 344 SVVGV-----GMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred EEECC-----CCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 77644 456678889999999999997 5554
No 93
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.62 E-value=0.16 Score=39.53 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=45.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcEEEEEEeC-chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGLFTIVVSG-TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~iiTIVV~g-de~~veQl~kQL~K 140 (414)
+++.+.++||-|.+++.+++. |.||-.+.-.... +.+.++++++. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999876544 22335555442 34678888888865
No 94
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.14 E-value=0.16 Score=51.87 Aligned_cols=101 Identities=14% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEEE---EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVF---VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVl---VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+++. ..|++|++.||...|++.|+||+.++.+.++ .-++++++. +..+++.+.|++...-... ..=.++
T Consensus 263 vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~----~~i~~~ 334 (401)
T TIGR00656 263 VTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGL----DRVEVE 334 (401)
T ss_pred EEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCC----ceEEEe
Confidence 7777 7899999999999999999999999887544 337777753 3355555555554321110 111356
Q ss_pred eeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 158 RELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 158 REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
+.+++|.|--. ++...++-...+++.|...||
T Consensus 335 ~~~a~IsvVG~-----~~~~~~g~~a~i~~~L~~~gI 366 (401)
T TIGR00656 335 EGLAKVSIVGA-----GMVGAPGVASEIFSALEEKNI 366 (401)
T ss_pred CCeEEEEEECC-----CcccCccHHHHHHHHHHHCCC
Confidence 77888877654 456677888889999999886
No 95
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.05 E-value=0.17 Score=38.02 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=32.8
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCc-EEEEEEeC
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG-LFTIVVSG 126 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~-iiTIVV~g 126 (414)
+.|++|++.++...|++.|+||+.+..+..++.+ .+++++..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH
Confidence 4688999999999999999999988766444322 36777763
No 96
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.05 E-value=0.17 Score=45.59 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=43.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc-EEEEEEeCchhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG-LFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~-iiTIVV~gde~~veQl~kQL~K 140 (414)
+.+-++++||-|+||+++|...++|++-+-...++... ++-+-++. ++..++.|++
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed----~d~~~~aLed 128 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED----IDRAIKALED 128 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH----HHHHHHHHHH
Confidence 89999999999999999999999999999998888743 33333443 4444455544
No 97
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.01 E-value=0.14 Score=53.03 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=39.5
Q ss_pred EEEEEe-CchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEeCch
Q 015044 81 ISVFVR-DESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVSGTD 128 (414)
Q Consensus 81 LSVlVe-N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~gde 128 (414)
|.+.+. |+||.|.+|+.+|+++|+||.+|....+....+ +.|.+.+.+
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~ 347 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS 347 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence 888885 999999999999999999999999955554443 777776544
No 98
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=93.96 E-value=0.27 Score=38.94 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=41.9
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch-----hHHHHHHHHHhc
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD-----RVLQQVIEQLQK 140 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde-----~~veQl~kQL~K 140 (414)
..+.+|++.||...|++.|+|++.++.++ .-+++++..++ ..++.|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~----~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE----VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC----cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 46789999999999999999999986422 34777776544 488899999999
No 99
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.73 E-value=0.32 Score=48.92 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=54.6
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-c-E-EEEEEe--CchhHHHHHHHHHhcCccEEEEE
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-G-L-FTIVVS--GTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~-i-iTIVV~--gde~~veQl~kQL~KLidVikV~ 148 (414)
.|. |.+.+.|+||.|.++.+.|+.||+|+..|---++... + + |-|-+. .++..+++..+.|.+.-..+++-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~kil 269 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKIL 269 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEEE
Confidence 344 8888999999999999999999999999999888743 3 2 555554 45556777777777776655553
No 100
>PRK08210 aspartate kinase I; Reviewed
Probab=93.62 E-value=0.5 Score=48.53 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=67.4
Q ss_pred EEEEEeCc-hhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhhee
Q 015044 81 ISVFVRDE-SGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERE 159 (414)
Q Consensus 81 LSVlVeN~-pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~RE 159 (414)
|+++-.|. ||.++||.+.|++.|+||+.++.+. + -+++++.. ...+++.+.|+++- ..-.+.+.
T Consensus 274 isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~~~~ 338 (403)
T PRK08210 274 IKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSVREN 338 (403)
T ss_pred EEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEEeCC
Confidence 77776666 9999999999999999999997762 2 24455542 23556555565531 12345677
Q ss_pred eeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 160 LMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 160 L~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
+++|.|--. ++.+.++-...+++.|...||
T Consensus 339 ~a~isvvG~-----~~~~~~g~~~~i~~aL~~~~I 368 (403)
T PRK08210 339 CAKVSIVGA-----GMAGVPGVMAKIVTALSEEGI 368 (403)
T ss_pred cEEEEEEcC-----CcCCCccHHHHHHHHHHhCCC
Confidence 888877654 556678888889999999886
No 101
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.58 E-value=0.28 Score=50.95 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=50.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeC--chhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSG--TDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~g--de~~veQl~kQL~KLid 143 (414)
|.+.+.|+||.|.++.+.|+.||+|+.+|---|+.... + |=|-+.| ++..+++..++|++.-.
T Consensus 300 l~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 300 LLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 77778899999999999999999999999998877653 2 5566665 34567888888877654
No 102
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.45 E-value=0.26 Score=39.75 Aligned_cols=56 Identities=13% Similarity=0.317 Sum_probs=41.5
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh----HHH-HHHHHHhcCccE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR----VLQ-QVIEQLQKLVNV 144 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~----~ve-Ql~kQL~KLidV 144 (414)
..++||++.+|...|++.|+||+-++.++ .-+++++..++. .+. .|.+-|+|+=+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 56889999999999999999999997522 336777765542 344 577778885444
No 103
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=93.31 E-value=0.22 Score=46.64 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=53.9
Q ss_pred EEEEE--eCchhHHHHHHHHHhccCcceeeEEeeecC--CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFV--RDESGVVDLIDEVFARRGYNIESLAVSGNK--DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlV--eN~pGVLsRItgLFsRRGyNIeSLtVg~Te--d~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|.+.. .++||+|..|+++.+.||++|..+-..+.| ++..+||++++ ..-..++.||.|+--|.+|..
T Consensus 96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 96 IEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred EEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence 66666 468999999999999999999998887653 44568888874 356678888889988888764
No 104
>PRK11898 prephenate dehydratase; Provisional
Probab=93.27 E-value=0.33 Score=48.32 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=48.1
Q ss_pred EEEEEeCc-hhHHHHHHHHHhccCcceeeEEeeecCCC--cE-EEEEEeC--chhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDE-SGVVDLIDEVFARRGYNIESLAVSGNKDK--GL-FTIVVSG--TDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~-pGVLsRItgLFsRRGyNIeSLtVg~Ted~--~i-iTIVV~g--de~~veQl~kQL~KLid 143 (414)
|.+.+.|+ ||.|.++.+.|+++|+|+.+|---+.... .+ |=|-++| ++..++++.+.|++...
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 66667665 99999999999999999999999887543 23 4444554 44478888888887655
No 105
>PRK08198 threonine dehydratase; Provisional
Probab=93.00 E-value=0.4 Score=49.19 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=48.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC---CCcE--EEEEEeC-chhHHHHHHHHHhcC
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK---DKGL--FTIVVSG-TDRVLQQVIEQLQKL 141 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te---d~~i--iTIVV~g-de~~veQl~kQL~KL 141 (414)
++++.+.++||.|.++..+++..|.||.+++-.... ..+. ++|+++. +.+.+++|.+.|++.
T Consensus 329 ~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 329 KLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred EEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 399999999999999999999999999999987532 1232 6666553 455788899888765
No 106
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=92.90 E-value=0.31 Score=36.54 Aligned_cols=49 Identities=18% Similarity=0.385 Sum_probs=37.9
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--hHHHHHHHHH
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--RVLQQVIEQL 138 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~~veQl~kQL 138 (414)
.+++|+..+|..+|++.|+|++.++.+. .-+++++..++ +.++.+++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 3679999999999999999999996522 44777777655 6677776655
No 107
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.81 E-value=0.26 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=48.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC----chhHHHHHHHHHhcCccE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG----TDRVLQQVIEQLQKLVNV 144 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g----de~~veQl~kQL~KLidV 144 (414)
|.|.+.|+||+|.+|+++|++.|+||.+-.+..+.+.-.=+..|.+ +++..++|.+.|.+.++|
T Consensus 789 i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 789 LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888877222222233332 346678888888776664
No 108
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.62 E-value=0.3 Score=55.76 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=47.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEE-e----CchhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVV-S----GTDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV-~----gde~~veQl~kQL~KLid 143 (414)
|.|...|+||+|.+|++.|++.|+||.+..+....+... |.|.- + .+++..+.|.+.|.+.++
T Consensus 846 i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred EEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999984422222 34432 1 234457778887776663
No 109
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=92.18 E-value=0.39 Score=38.55 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=41.2
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--h-HHHHHHHHHhcCccE
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--R-VLQQVIEQLQKLVNV 144 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~-~veQl~kQL~KLidV 144 (414)
-.++|.+.+|.+.|++.|+|++-+..++ .-+++++..++ + .++.|.+-|+|+-+|
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 3469999999999999999999997522 33666665332 3 788888888885443
No 110
>PRK03381 PII uridylyl-transferase; Provisional
Probab=91.96 E-value=0.35 Score=54.32 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=43.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeCch---hHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTD---RVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde---~~veQl~kQL~KL 141 (414)
+.|+..|+||++++|+++|++.|+||.+-.+.. ..|. .++.|.+.+ ...+++.+.|++.
T Consensus 602 V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 602 VTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred EEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999998874 3443 455554311 2235555555544
No 111
>PRK12483 threonine dehydratase; Reviewed
Probab=91.91 E-value=1.5 Score=47.58 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=74.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC-cEE--EEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhh-
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK-GLF--TIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVI- 156 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~-~ii--TIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V- 156 (414)
+++..-++||-|.+++.+++.+ ||..+.-...... ..+ +|-+.+.+...++|+++|++.= .++.++++.+..
T Consensus 348 ~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdne~~k 423 (521)
T PRK12483 348 IAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDDELAK 423 (521)
T ss_pred EEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCCHHHH
Confidence 9999999999999999999998 9998877643222 224 4445554544599999997643 467788776553
Q ss_pred --------------heeeeEEEEecCccccccccCCHHHHHHHHHhhcc-CCcEEEe
Q 015044 157 --------------ERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSST-VGILEIA 198 (414)
Q Consensus 157 --------------~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~-fGIlEia 198 (414)
.||- |+.| ++--.|+-+-.|++.|.+ ..|-|+-
T Consensus 424 ~h~r~~~g~~~~~~~~E~-~~~v--------~iPE~pGa~~~f~~~l~~~~niTeF~ 471 (521)
T PRK12483 424 LHIRHMVGGRAPLAHDER-LFRF--------EFPERPGALMKFLSRLGPRWNISLFH 471 (521)
T ss_pred HHHHhccCCCCCCCCceE-EEEE--------EcCCCCcHHHHHHHHhCCCcceeeee
Confidence 3332 2323 555678889999999998 5787763
No 112
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.61 E-value=0.65 Score=49.38 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=49.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc--E-EEEEEeCc-hhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG--L-FTIVVSGT-DRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~--i-iTIVV~gd-e~~veQl~kQL~KLi 142 (414)
|.+.+.|+||.|.+|..+|+++|+|+.+|---++.... + +=|-++|. +..++++++.|.+..
T Consensus 19 LiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 19 LIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 77777999999999999999999999999988865442 3 44555555 477888888888876
No 113
>PLN02317 arogenate dehydratase
Probab=91.56 E-value=0.83 Score=47.83 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=47.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC----------------cE-EEEEEeCc--hhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK----------------GL-FTIVVSGT--DRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~----------------~i-iTIVV~gd--e~~veQl~kQL~KL 141 (414)
|.+..+|+||.|.++...|+.||+|+..|---+.... .+ |-|-+++. +..+++..+.|++.
T Consensus 286 ivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L~~~ 365 (382)
T PLN02317 286 IVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHLQEF 365 (382)
T ss_pred EEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHHHHh
Confidence 7777799999999999999999999999987775433 22 44445554 56677888777765
Q ss_pred cc
Q 015044 142 VN 143 (414)
Q Consensus 142 id 143 (414)
-.
T Consensus 366 ~~ 367 (382)
T PLN02317 366 AT 367 (382)
T ss_pred cC
Confidence 54
No 114
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.50 E-value=0.91 Score=36.95 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=49.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcEEEEEEeC-c-hhHHHHHHHHHhcCccEEEEEecCCchhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGLFTIVVSG-T-DRVLQQVIEQLQKLVNVLKVEDFSNEPVI 156 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~iiTIVV~g-d-e~~veQl~kQL~KLidVikV~dlt~~~~V 156 (414)
+.+.+.++||-|.+++.+++ +-||..+.-.... +.+.+.++++. + .+.++++.+.|++.= +++.+.++.+..
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~~ 78 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDELA 78 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHHH
Confidence 78889999999999999999 6788866665433 33344454442 3 467888888886643 245556665543
No 115
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=91.28 E-value=0.69 Score=49.54 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=55.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC--c-E-EEEEEeCchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK--G-L-FTIVVSGTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~--~-i-iTIVV~gde~~veQl~kQL~KLidVikV~ 148 (414)
|.+.+.|+||.|.++..+|+.+|+|+..|---++... . + +=|-++|+...++++.+.|.+..+.+.|.
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 5555699999999999999999999999988876533 3 3 45566788888999999999888876664
No 116
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=91.28 E-value=0.5 Score=40.92 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCc-E----EEEEEeCchhHHHHHHHHHhcCccEEEEEecCC
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKG-L----FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSN 152 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~-i----iTIVV~gde~~veQl~kQL~KLidVikV~dlt~ 152 (414)
+-|.+|..|..+-...|..+.+++.+.....+ + ++|.+.|+-..+-+..++|+++-.++.|++++=
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~l 121 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLSL 121 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeEE
Confidence 46899999999999999999999998755443 3 788899999999999999999999999998763
No 117
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=90.62 E-value=1.3 Score=32.29 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=35.5
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
..+.+|++.|+.+.+++.|+|++.++.. +.-+++++..+ ..+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDED--DAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeHH--HHHHHHHHHHH
Confidence 4577999999999999999999999842 24477777643 33444444443
No 118
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.46 E-value=0.9 Score=37.26 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=36.8
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh--------HHHHHHHHHhc
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR--------VLQQVIEQLQK 140 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~--------~veQl~kQL~K 140 (414)
..++||++.+|-..|++.|+||+-++.++ .-+.+++..++. .++++.+.|+|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35789999999999999999999997522 336666664442 34455554444
No 119
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.30 E-value=0.76 Score=52.60 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEE---eC----chhHHHHHHHHHhcCccE-EEEEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVV---SG----TDRVLQQVIEQLQKLVNV-LKVEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV---~g----de~~veQl~kQL~KLidV-ikV~dlt 151 (414)
|.|...|+||++++|+++|++.|+||.+-.+..+.+.-. -++.| .| +++..+.|.+.|++...= ..+...-
T Consensus 735 v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 814 (931)
T PRK05092 735 VTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEAL 814 (931)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 999999999999999999999999999999988765433 45555 33 345677777777665410 0010000
Q ss_pred -C--ch----hhheeeeEEEEecCcccc-c----cccCCHHHHHHHHHhhccCCc-EEEeccc
Q 015044 152 -N--EP----VIERELMLIKVNADPKFC-A----EVSGDPGKVAAVQRNSSTVGI-LEIARTG 201 (414)
Q Consensus 152 -~--~~----~V~REL~LiKV~~~~~~r-~----EvTG~~~KIdafi~~L~~fGI-lEiaRTG 201 (414)
. .+ ....---.|.+.-+.... . .....|+=+-.+...|..+|| ++.++.-
T Consensus 815 ~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 815 AKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred ccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 0 00 000000112222221111 1 444568888888889999997 6776654
No 120
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.27 E-value=0.88 Score=51.44 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=45.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-C---chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-G---TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-g---de~~veQl~kQL~K 140 (414)
+.|...|+||+|.+|+.+|+..|+||.+..+....+... |.+.-. | +++..+.|.++|.+
T Consensus 782 ~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~ 847 (850)
T TIGR01693 782 MEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA 847 (850)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987665443 444321 1 23556677766643
No 121
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=90.18 E-value=1.3 Score=31.80 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.7
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
.+++|++.++...|++.++|+..++.+.++ .-++++++. ...+.+.+.|+|
T Consensus 11 ~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~--~~i~~~v~~--~~~~~~~~~l~~ 61 (65)
T cd04892 11 RGTPGVAARIFSALAEAGINIIMISQGSSE--VNISFVVDE--DDADKAVKALHE 61 (65)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEcCCCc--eeEEEEEeH--HHHHHHHHHHHH
Confidence 478999999999999999999988775522 225666654 334444444444
No 122
>PRK07431 aspartate kinase; Provisional
Probab=89.44 E-value=1.3 Score=47.95 Aligned_cols=98 Identities=18% Similarity=0.325 Sum_probs=66.2
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEeCchhHHHHHHHHHhcCccEEEEEecC-CchhhheeeeE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS-NEPVIERELML 162 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~gde~~veQl~kQL~KLidVikV~dlt-~~~~V~REL~L 162 (414)
+.+++|.++||.+.|.+.|+||+.++.+.++.... +.++++.++ +++..+.|+++.+ ++. .+=.+.+++++
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~-----~~~~~~i~~~~~~a~ 350 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAP-----ALGGAEVLVETNVAK 350 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHH-----HcCCCcEEEeCCeEE
Confidence 45789999999999999999999998776554322 566665432 4444444444321 111 12235678889
Q ss_pred EEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 163 IKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 163 iKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
|.|--. .+.+.++-...+++.|..+||
T Consensus 351 IsvvG~-----gm~~~~gi~~ki~~aL~~~~I 377 (587)
T PRK07431 351 LSISGA-----GMMGRPGIAAKMFDTLAEAGI 377 (587)
T ss_pred EEEECC-----CcccCccHHHHHHHHHHHCCC
Confidence 988754 455667777888999999985
No 123
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.35 E-value=2.4 Score=45.13 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=65.2
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--hHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEE
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--RVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIK 164 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiK 164 (414)
+++|++.||.+++++.|+|++.+..+.+++. +++++.+++ +..+.+.+....+.. +-.+++.+++|-
T Consensus 319 ~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~~~~~~a~vs 387 (447)
T COG0527 319 GMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA---------EVEVEEGLALVS 387 (447)
T ss_pred ccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc---------eEEeeCCeeEEE
Confidence 3459999999999999999999988877776 777777544 223333333332222 223556677776
Q ss_pred EecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 165 VNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 165 V~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
+--. -+.+.++-...|.+.|.+++|
T Consensus 388 iVG~-----gm~~~~gvaa~~f~aL~~~~i 412 (447)
T COG0527 388 IVGA-----GMRSNPGVAARIFQALAEENI 412 (447)
T ss_pred EEcc-----ccccCcCHHHHHHHHHHhCCC
Confidence 5443 567888888999999999886
No 124
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.11 E-value=1.4 Score=34.44 Aligned_cols=52 Identities=31% Similarity=0.385 Sum_probs=35.6
Q ss_pred EEEEEe----CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 81 ISVFVR----DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 81 LSVlVe----N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
|++.-. +.||+++|++..++..|+||.-++ |+. -+.+.|. ++.+++..+-|+
T Consensus 9 i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~--~~~~~~A~~~L~ 64 (65)
T PF13840_consen 9 ISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVK--EEDLEKAVEALH 64 (65)
T ss_dssp EEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEE--GGGHHHHHHHHH
T ss_pred EEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEe--HHHHHHHHHHhc
Confidence 666555 699999999999999999998887 332 2455555 334555555443
No 125
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=88.96 E-value=0.87 Score=45.81 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=58.8
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC-
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG- 353 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~- 353 (414)
-++.||+|+.+--...++....|++.|+.+. .....+ +. .+..+.+++.+.|+|||+=||..--.. -.+|.+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~a--K~ia~~~ 100 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTA--KAVADYL 100 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHH--HHHHHHc
Confidence 3788999876655788899999999999876 333344 22 455566667789999999966665666 445443
Q ss_pred -ccEEEecCcC
Q 015044 354 -SPVIGVPVRA 363 (414)
Q Consensus 354 -T~VIgVP~~~ 363 (414)
.++|.||+..
T Consensus 101 ~~P~iaIPTTa 111 (351)
T cd08170 101 GAPVVIVPTIA 111 (351)
T ss_pred CCCEEEeCCcc
Confidence 3399999865
No 126
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=88.76 E-value=1.1 Score=51.23 Aligned_cols=62 Identities=6% Similarity=0.221 Sum_probs=46.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEE-e--C----chhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVV-S--G----TDRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV-~--g----de~~veQl~kQL~KLi 142 (414)
|.|+..|+||+|.+|+++|++.|+||.+-.+..+.+.-.=++.| + | +++..++|.+.|.+.+
T Consensus 817 i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998883332323333 2 2 2346677777776544
No 127
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.69 E-value=1.3 Score=33.28 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=36.0
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
.+.+|++.|+...|++.|+|++.++-+.++ .-+.+++..++ .+.+.+.|.
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh 61 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIH 61 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHH
Confidence 367999999999999999999999876643 34667776433 333344443
No 128
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=88.64 E-value=1.1 Score=50.80 Aligned_cols=123 Identities=21% Similarity=0.288 Sum_probs=73.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---C----chhHHHHHHHHHhcCccEEE-EEecC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---G----TDRVLQQVIEQLQKLVNVLK-VEDFS 151 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---g----de~~veQl~kQL~KLidVik-V~dlt 151 (414)
|.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-. =+..|. | +++..++|.+.|.+.++=.. ....-
T Consensus 671 i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~ 750 (850)
T TIGR01693 671 VFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTI 750 (850)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 999999999999999999999999999999998876543 233332 2 22345556655544442100 00000
Q ss_pred Cchh-hheeeeE----EEEecCcc---ccc----cccCCHHHHHHHHHhhccCCc-EEEecccce
Q 015044 152 NEPV-IERELML----IKVNADPK---FCA----EVSGDPGKVAAVQRNSSTVGI-LEIARTGKT 203 (414)
Q Consensus 152 ~~~~-V~REL~L----iKV~~~~~---~r~----EvTG~~~KIdafi~~L~~fGI-lEiaRTG~i 203 (414)
.... ..|.+-- -+|..+++ +++ .....|+=+..+.+.|..+|| ++.+++...
T Consensus 751 ~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~ 815 (850)
T TIGR01693 751 SARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTF 815 (850)
T ss_pred ccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEec
Confidence 0000 0111110 12222221 122 444568889999999999997 787777654
No 129
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=88.59 E-value=1.3 Score=32.99 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=35.7
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHH
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQL 138 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL 138 (414)
.+.+|++.||...|++.|+|++.++-+.++ .-+++++..++ .++..+.|
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~l 60 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAV 60 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHH
Confidence 478999999999999999999999775532 34777776433 34444444
No 130
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=88.28 E-value=0.79 Score=46.21 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=57.8
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
.++.||+|..+-....++..+.|++-|+.+..+ ...+ +. .+..+.+++.++++|||+=||..--+. ..+|..
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~a--K~ia~~ 100 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTV--KVLADK 100 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHH--HHHHHH
Confidence 479999998776667788888999889887622 2334 22 445555667788999999866666666 555543
Q ss_pred --ccEEEecCcC
Q 015044 354 --SPVIGVPVRA 363 (414)
Q Consensus 354 --T~VIgVP~~~ 363 (414)
.++|.||+..
T Consensus 101 ~~~p~i~VPTt~ 112 (345)
T cd08171 101 LGKPVFTFPTIA 112 (345)
T ss_pred cCCCEEEecCcc
Confidence 2399999865
No 131
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.26 E-value=1.9 Score=32.12 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=32.2
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCc
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGT 127 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gd 127 (414)
.+.+|++.|+...+++.|+|++.++.+.++ .-+++++..+
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~ 51 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNE 51 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence 468999999999999999999999876533 3477777653
No 132
>PRK05007 PII uridylyl-transferase; Provisional
Probab=88.02 E-value=1.5 Score=50.18 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=69.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---C---chhHHHHHHHHHhcCccEE-EEEecCC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---G---TDRVLQQVIEQLQKLVNVL-KVEDFSN 152 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---g---de~~veQl~kQL~KLidVi-kV~dlt~ 152 (414)
|.|...|+||+|.+|++.|++.|+||.+-.+..+.+.-. =+..|. | +++.+++|.+.|.+.++=- .......
T Consensus 704 V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~~~~~~~~ 783 (884)
T PRK05007 704 IFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPR 783 (884)
T ss_pred EEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccc
Confidence 999999999999999999999999999999988866322 233331 2 2245556666666544211 0000000
Q ss_pred chhhheeeeEE----EEecCcc---ccc----cccCCHHHHHHHHHhhccCCc-EEEec
Q 015044 153 EPVIERELMLI----KVNADPK---FCA----EVSGDPGKVAAVQRNSSTVGI-LEIAR 199 (414)
Q Consensus 153 ~~~V~REL~Li----KV~~~~~---~r~----EvTG~~~KIdafi~~L~~fGI-lEiaR 199 (414)
...|..--. +|..+.+ +++ .....|+=+-.+.+.|..+|| +..+|
T Consensus 784 --~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~Ak 840 (884)
T PRK05007 784 --RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGAR 840 (884)
T ss_pred --ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEE
Confidence 001111110 1222221 111 344558888888888888887 55554
No 133
>PRK03381 PII uridylyl-transferase; Provisional
Probab=87.84 E-value=1.6 Score=49.12 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=34.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD 116 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted 116 (414)
|.|...|+||+|.+|+++|+..|+||.+..+....+
T Consensus 710 i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~ 745 (774)
T PRK03381 710 LEVRAADRPGLLARLARALERAGVDVRWARVATLGA 745 (774)
T ss_pred EEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 999999999999999999999999999999988833
No 134
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=86.70 E-value=2 Score=49.05 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=71.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---C---chhHHHHHHHHHhcCccEEE-EEecCC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---G---TDRVLQQVIEQLQKLVNVLK-VEDFSN 152 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---g---de~~veQl~kQL~KLidVik-V~dlt~ 152 (414)
|.|...|+||+|.+|++.|++.|+||.+=.+..+.+.-. =++.|. | +++.+++|.+.|++.++--. ......
T Consensus 680 V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~~~~~~~~ 759 (854)
T PRK01759 680 IFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLE 759 (854)
T ss_pred EEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCCCcchhcc
Confidence 999999999999999999999999999988877665543 233332 2 23456667776666554211 000000
Q ss_pred chhhheeee-EEEEecCcc---ccc--cc--cCCHHHHHHHHHhhccCCc-EEEecc
Q 015044 153 EPVIERELM-LIKVNADPK---FCA--EV--SGDPGKVAAVQRNSSTVGI-LEIART 200 (414)
Q Consensus 153 ~~~V~REL~-LiKV~~~~~---~r~--Ev--TG~~~KIdafi~~L~~fGI-lEiaRT 200 (414)
.+...+... =-+|..+.+ +++ |+ -+.|+=+-.+-+.|..+|| ++.+|=
T Consensus 760 ~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI 816 (854)
T PRK01759 760 ENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI 816 (854)
T ss_pred ccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence 000000000 012333222 122 44 4558888999999999997 676653
No 135
>PRK05007 PII uridylyl-transferase; Provisional
Probab=86.60 E-value=1.8 Score=49.48 Aligned_cols=62 Identities=13% Similarity=0.355 Sum_probs=46.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-C---chhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-G---TDRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-g---de~~veQl~kQL~KLi 142 (414)
|.|.+.|+||+|.+|+.+|.+-|+||.+--+..-.+.-. |-|.-. | +++..+.|.++|...+
T Consensus 811 lEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 811 MELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred EEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887555543 444332 2 2455666766665444
No 136
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=86.46 E-value=4.2 Score=28.47 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHH
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIE 136 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~k 136 (414)
+.+|.+.|+...|++.++||+.++.+.+ ..-+++++..+ ..+++.+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~ 57 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVK 57 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHH
Confidence 4789999999999999999999988765 22366776632 3444443
No 137
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=86.24 E-value=1.9 Score=43.80 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=58.6
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
.++.||++..+--...++..+.|+..|+.+. .....+ +. .+..+.+++.+.++|||+=||..--+. ..+|.+.
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~a--K~iA~~~ 107 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTA--KAVADYL 107 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHH--HHHHHHc
Confidence 3788888876655577888889999898775 223344 22 556666777789999999977777777 6666542
Q ss_pred --cEEEecCcC
Q 015044 355 --PVIGVPVRA 363 (414)
Q Consensus 355 --~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 108 ~~p~i~IPTta 118 (366)
T PRK09423 108 GVPVVIVPTIA 118 (366)
T ss_pred CCCEEEeCCcc
Confidence 399999864
No 138
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.12 E-value=1.9 Score=31.93 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=36.1
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
.+.+|++.++...|++.|+|++-++.+.++ .-+++++..+ ..+++.+.|.+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~ 62 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence 467999999999999999999999876543 3366676643 24444444443
No 139
>PRK03059 PII uridylyl-transferase; Provisional
Probab=86.04 E-value=2.1 Score=48.89 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=45.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---Cc---hhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---GT---DRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---gd---e~~veQl~kQL~K 140 (414)
|.|+..|+||++++|+|+|+..|.||.+--+-.+.+.-. =|..|. |. ++..++|.+.|++
T Consensus 681 v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 681 VMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAE 747 (856)
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877765543 355552 22 2346666666655
No 140
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=85.69 E-value=2.2 Score=48.94 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=44.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEe---Cc-----hhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVS---GT-----DRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~---gd-----e~~veQl~kQL~KL 141 (414)
+.|+..|+||++.+|+|.|++.|+||.+=.+..+.+.-. =+..|. |. ++.+++|.+.|.+.
T Consensus 707 V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~ 776 (895)
T PRK00275 707 IFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEA 776 (895)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877665433 244442 22 23556666666554
No 141
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=84.95 E-value=1.4 Score=44.37 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=57.6
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEe-ecC-ch-----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVM-KSY-TK-----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~-SaH-~p-----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
+|.||+++..-....++..+.|++.|+.+..+. ... +| .+..+.+++ +.++|||+=||...-+. +.+|-+
T Consensus 26 kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~a--K~iA~~ 102 (332)
T cd08549 26 KIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLV--KFVSFK 102 (332)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHH--HHHHHH
Confidence 789999877755567888899999888766222 223 33 445555655 78999999988877888 777744
Q ss_pred c--cEEEecCcC
Q 015044 354 S--PVIGVPVRA 363 (414)
Q Consensus 354 T--~VIgVP~~~ 363 (414)
. ++|.||+..
T Consensus 103 ~gip~I~VPTT~ 114 (332)
T cd08549 103 VGKPFISVPTAP 114 (332)
T ss_pred cCCCEEEeCCCc
Confidence 2 399999865
No 142
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=84.61 E-value=1.6 Score=37.44 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=45.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEE--EEeCc--hhHHHHH----HHHHhcCccEEEEEe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTI--VVSGT--DRVLQQV----IEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTI--VV~gd--e~~veQl----~kQL~KLidVikV~d 149 (414)
|+|.-+||||+.+.|+++|++.|.||.- ++.|--.+++|+ .|+.+ ......+ .+..++|==-+.|+.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~vq~ 80 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRVQR 80 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEEEEee
Confidence 8999999999999999999999999974 555655666555 35543 2233333 344555544444443
No 143
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.51 E-value=2.9 Score=34.57 Aligned_cols=58 Identities=12% Similarity=0.264 Sum_probs=44.4
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCc---hhHHHHHHHHHhcCccEEE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGT---DRVLQQVIEQLQKLVNVLK 146 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gd---e~~veQl~kQL~KLidVik 146 (414)
..++.|.+.|+..+|.+.|+++|.+..|-. + |+|+++.+ ++.+++|++.|.+-.+.=.
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSGID---~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSGID---D-ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCCCc---c-EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 467899999999999999999998765421 2 89999876 4477778888877554433
No 144
>PRK04374 PII uridylyl-transferase; Provisional
Probab=84.41 E-value=2.4 Score=48.58 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=44.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEeCc----hhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVSGT----DRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~gd----e~~veQl~kQL~K 140 (414)
+.|+..|+||++++|+|+|++.|+||.+--+..+.+.-. =|+.|... ++..+++.+.|++
T Consensus 693 v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 693 VFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQ 757 (869)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999988887766543 34444321 2334555555544
No 145
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=84.38 E-value=0.22 Score=49.86 Aligned_cols=41 Identities=34% Similarity=0.456 Sum_probs=37.8
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEecccceeeecccCCcCC
Q 015044 174 EVSGDPGKVAAVQRNSSTVGILEIARTGKTAFRREKLGASV 214 (414)
Q Consensus 174 EvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R~~~~~~~ 214 (414)
|+|.+++++..|+.+++|||++|-.|||..|+.|.....+.
T Consensus 247 elta~p~rV~~fl~l~dp~gvle~~rSGl~a~trspl~n~v 287 (309)
T KOG2663|consen 247 ELTAKPGRVYPFLPLVDPKGVLEEDRSGLRAHTRSPLVNSV 287 (309)
T ss_pred eeccCCCcccccccccCcccchhhcccchhhcccccccccC
Confidence 99999999999999999999999999999999999765443
No 146
>PRK04374 PII uridylyl-transferase; Provisional
Probab=84.21 E-value=2.7 Score=48.21 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=45.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEE-eC---chhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVV-SG---TDRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV-~g---de~~veQl~kQL~KLi 142 (414)
|.|.+.|+||+|.+|++.|++.|+||.+--+....+.-. +.|.- +| ++...++|.++|.+.+
T Consensus 799 leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 799 ISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred EEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988833323 34432 12 1223366666665544
No 147
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=83.99 E-value=1.6 Score=44.10 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=57.3
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc-
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS- 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T- 354 (414)
++.||+|..+-....++....|++-|+.++ .+.+-+ +. .+..+.+++.++++|||+=||..--.. ..+|.+.
T Consensus 24 ~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~a--K~ia~~~~ 101 (349)
T cd08550 24 KVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTA--KAVADRLD 101 (349)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHH--HHHHHHcC
Confidence 678888876655677888899998888765 343334 33 455666677789999999866666666 5565432
Q ss_pred -cEEEecCcC
Q 015044 355 -PVIGVPVRA 363 (414)
Q Consensus 355 -~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 102 ~p~i~VPTta 111 (349)
T cd08550 102 KPIVIVPTIA 111 (349)
T ss_pred CCEEEeCCcc
Confidence 399999865
No 148
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.96 E-value=4.5 Score=29.48 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=30.2
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG 126 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g 126 (414)
..+.+|++.++...+++.|+|++.++.. ..-+++++..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~ 47 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE 47 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence 3477999999999999999999999843 2336777764
No 149
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=83.95 E-value=4 Score=31.82 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=35.6
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCc--hhHHHHHHHHH
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGT--DRVLQQVIEQL 138 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gd--e~~veQl~kQL 138 (414)
..+.+|++.++...|++.|+|++.++.+.++ . -+++++..+ ++.++.+.+.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~-~-~isf~v~~~d~~~~~~~l~~~~ 64 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE-H-SISFVVDESDADKALEALEEEF 64 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc-c-eEEEEEeHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999887333 2 355666533 23344444444
No 150
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=83.78 E-value=3.1 Score=32.56 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=29.8
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG 126 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g 126 (414)
.+|.||++++|.+.++++|+||+-++.. .+ + +++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~--~-isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE--E-VIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC--C-EEEEEch
Confidence 4578999999999999999999999555 22 2 5566653
No 151
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.53 E-value=2.6 Score=42.58 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=47.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEeC--chhHHHHHHHHHhcCcc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVSG--TDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~g--de~~veQl~kQL~KLid 143 (414)
|.+-.-+++|..++|++.+.++|.||....--...+.|. |++...+ .....+++...+..+-+
T Consensus 10 LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 10 LTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred EEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999999888774334554 6776653 32457777776655444
No 152
>PRK09084 aspartate kinase III; Validated
Probab=83.51 E-value=7.2 Score=41.22 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh-------HHHHHHHHHhcCccEEEEEecCCchhhhee
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR-------VLQQVIEQLQKLVNVLKVEDFSNEPVIERE 159 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~-------~veQl~kQL~KLidVikV~dlt~~~~V~RE 159 (414)
+++|.++||...|++.|+||+-++.++ .-++++++.++. ..+.+.+.|+++-. -.+++.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~----------i~~~~~ 383 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR----------VEVEEG 383 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe----------EEEECC
Confidence 689999999999999999999998432 236777765442 22455555553211 134677
Q ss_pred eeEEEEecCccccccccCCHHHHHHHHHhhccCCcE
Q 015044 160 LMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGIL 195 (414)
Q Consensus 160 L~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGIl 195 (414)
+++|.|--. .+.+.++-...+++.|...+|.
T Consensus 384 va~IsvvG~-----gm~~~~gv~arif~aL~~~nI~ 414 (448)
T PRK09084 384 LALVALIGN-----NLSKACGVAKRVFGVLEPFNIR 414 (448)
T ss_pred eEEEEEECC-----CcccCcChHHHHHHHHHhCCeE
Confidence 888888654 3455667777778888766653
No 153
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=83.45 E-value=7.8 Score=38.06 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEEEeCch--hHHHHHHHHHhccCcceeeEEeeecCCCc--EEEE--EEeC-chhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDES--GVVDLIDEVFARRGYNIESLAVSGNKDKG--LFTI--VVSG-TDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~p--GVLsRItgLFsRRGyNIeSLtVg~Ted~~--iiTI--VV~g-de~~veQl~kQL~KLidVikV~d 149 (414)
+++.+.++. .++.++...+...+|.+.++.+.+.++++ .++. ...+ ++..+++++.+|...-.|.+|.=
T Consensus 145 ~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~W 220 (225)
T PRK15385 145 LKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHW 220 (225)
T ss_pred EEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEEE
Confidence 777777755 56999999999999999999998766554 3444 3443 57889999999999999998863
No 154
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=83.41 E-value=3.9 Score=31.22 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=33.1
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
.+.||++.|+...|++.|+|+...+. .+--+.++++.+ ..+++.+.|++
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~ 60 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE 60 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence 36899999999999999999974443 222377777643 34444444443
No 155
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=83.40 E-value=6.6 Score=44.79 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=61.2
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch-----hHHHHHHHHHhcCccEEEEEecCCchhhheee
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD-----RVLQQVIEQLQKLVNVLKVEDFSNEPVIEREL 160 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde-----~~veQl~kQL~KLidVikV~dlt~~~~V~REL 160 (414)
-+++|+++||.+.|++.|+||+-++.+ + .-++++++..+ +.++++.++|.++-.|. +++.+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e--~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~~v 398 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSS--E--TNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIVPC 398 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcC--C--CEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeCCe
Confidence 468999999999999999999988543 2 23677776543 45666667776532221 33556
Q ss_pred eEEEEecCccccccccCCHHHHHHHHHhhccCCcE
Q 015044 161 MLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGIL 195 (414)
Q Consensus 161 ~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGIl 195 (414)
++|.|--. .+.+.++-...+++.|...||.
T Consensus 399 a~ISvVG~-----gm~~~~gv~arif~aL~~~~I~ 428 (861)
T PRK08961 399 AAVSLVGR-----GMRSLLHKLGPAWATFGAERVH 428 (861)
T ss_pred EEEEEeCC-----CcccCcChHHHHHHHHhhcCeE
Confidence 77766544 4556666666777777777753
No 156
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=83.36 E-value=1.6 Score=44.12 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=56.9
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
++.|++|..+-. ....+..+.|++.|+.+..+ ...| +. .+.++.++..++++|||+=||..-.+. ..+|..
T Consensus 25 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~A--K~va~~ 102 (370)
T cd08551 25 KALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTA--KAIALL 102 (370)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH--HHHHHH
Confidence 788899877655 67778889999988877633 3345 33 556666777889999999855554555 344432
Q ss_pred --------------------ccEEEecCcC
Q 015044 354 --------------------SPVIGVPVRA 363 (414)
Q Consensus 354 --------------------T~VIgVP~~~ 363 (414)
.++|.||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 103 ATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred HhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 2399999975
No 157
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=83.34 E-value=1.6 Score=44.17 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=43.5
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
++.||+|..+- ...+..+.|++.|+.+..... .| +. .+..+.+++.++++|||+=||..-...
T Consensus 25 ~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~a 93 (367)
T cd08182 25 RVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTA 93 (367)
T ss_pred eEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHH
Confidence 78899887764 667788889999987653322 33 22 556666777889999999855444444
No 158
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=83.05 E-value=2.5 Score=42.51 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=57.7
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC--c
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG--S 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~--T 354 (414)
++.||++...-....++..+.|++.| .+..+...+ +. .+..+.+++.+.++|||+=||...-+. +.+|-+ .
T Consensus 27 ~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~a--K~~a~~~~~ 103 (339)
T cd08173 27 RVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVA--KVAAYKLGI 103 (339)
T ss_pred eEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHH--HHHHHhcCC
Confidence 68888887766677888899999998 666333333 33 455566666788999999977777777 666643 2
Q ss_pred cEEEecCcC
Q 015044 355 PVIGVPVRA 363 (414)
Q Consensus 355 ~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 104 p~i~iPTT~ 112 (339)
T cd08173 104 PFISVPTAA 112 (339)
T ss_pred CEEEecCcc
Confidence 399999865
No 159
>PLN02551 aspartokinase
Probab=82.98 E-value=8.4 Score=41.85 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh--------HHHHHHHHHhcCccEEEEEecCCchhhhe
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR--------VLQQVIEQLQKLVNVLKVEDFSNEPVIER 158 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~--------~veQl~kQL~KLidVikV~dlt~~~~V~R 158 (414)
+++|+++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|+++. .-.+++
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~----------~V~v~~ 443 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKIA----------VVNLLQ 443 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC----------eEEEeC
Confidence 68999999999999999999999643 2 236777775542 2223333343311 123556
Q ss_pred eeeEEEEecCccccccccCCHHHHHHHHHhhccCCc-EEEeccc
Q 015044 159 ELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIARTG 201 (414)
Q Consensus 159 EL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEiaRTG 201 (414)
++++|-|--. +.+.++-...+++.|...|| +.+.=.|
T Consensus 444 ~vAiISvVG~------~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 444 GRSIISLIGN------VQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred CEEEEEEEcc------CCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 7888877543 23456667789999999987 5555544
No 160
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=82.82 E-value=1.8 Score=43.67 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=60.3
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeec-C-ch-----HHHHHHHHhCCC---eEEEEEeCCCCCCCCcCCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKS-Y-TK-----KQLITKLSRSGR---KVIIATDHGVGAFLDKIDL 349 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~Sa-H-~p-----~~~~~~~~~~g~---~ViIavA~G~sa~Lp~~gv 349 (414)
++.|+++....-.+.++..+.|+..|+.+. .+... . +| .+..+.+.+.++ +++||+=||...-+. ++
T Consensus 26 ~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~a--k~ 103 (345)
T cd08195 26 KILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLA--GF 103 (345)
T ss_pred eEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHH--HH
Confidence 688898887766788999999999998877 33332 2 33 445555666666 899999988888888 88
Q ss_pred cccC----ccEEEecCc
Q 015044 350 LASG----SPVIGVPVR 362 (414)
Q Consensus 350 vAg~----T~VIgVP~~ 362 (414)
+|+. .+.|.||+.
T Consensus 104 vA~~~~rgip~i~VPTT 120 (345)
T cd08195 104 VAATYMRGIDFIQIPTT 120 (345)
T ss_pred HHHHHhcCCCeEEcchh
Confidence 8853 239999985
No 161
>PRK09034 aspartate kinase; Reviewed
Probab=82.80 E-value=6.2 Score=41.71 Aligned_cols=97 Identities=14% Similarity=0.283 Sum_probs=65.4
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchh--HH-HHHHHHHhcCccEEEEEecCCchhhheeeeEE
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDR--VL-QQVIEQLQKLVNVLKVEDFSNEPVIERELMLI 163 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~--~v-eQl~kQL~KLidVikV~dlt~~~~V~REL~Li 163 (414)
.++|++.||.+.|++.|+||+.++ ....-++++++.++. .. ..+.+.|++-..+..| .+.+.+++|
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va~V 388 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLAII 388 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEEEE
Confidence 478999999999999999999983 222237777775432 11 4555556544432222 456778888
Q ss_pred EEecCccccccccCCHHHHHHHHHhhccCCc-EEEec
Q 015044 164 KVNADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIAR 199 (414)
Q Consensus 164 KV~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEiaR 199 (414)
.|--. .+.++++-...+++.|.+.|| +.++-
T Consensus 389 sivG~-----g~~~~~gv~arif~aL~~~~InV~mIs 420 (454)
T PRK09034 389 MVVGE-----GMRQTVGVAAKITKALAEANINIQMIN 420 (454)
T ss_pred EEECC-----CCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 87543 344567778889999999997 55543
No 162
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=82.63 E-value=2.2 Score=43.33 Aligned_cols=80 Identities=19% Similarity=0.106 Sum_probs=58.9
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC--c
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG--S 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~--T 354 (414)
++.||++..+--...++..+.|++.| .+..+...| +. .+..+.+++.+.++|||+=||...-+. +.+|-. .
T Consensus 36 ~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~a--k~vA~~rgi 112 (350)
T PRK00843 36 RALIVTGPTTKKIAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVA--KLAAYRLGI 112 (350)
T ss_pred eEEEEECCcHHHHHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHH--HHHHHhcCC
Confidence 78999998887667777888898888 666334445 43 455566666788999999977777777 777643 2
Q ss_pred cEEEecCcC
Q 015044 355 PVIGVPVRA 363 (414)
Q Consensus 355 ~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 113 p~I~IPTT~ 121 (350)
T PRK00843 113 PFISVPTAA 121 (350)
T ss_pred CEEEeCCCc
Confidence 399999865
No 163
>PRK06291 aspartate kinase; Provisional
Probab=82.47 E-value=4.2 Score=42.98 Aligned_cols=95 Identities=17% Similarity=0.330 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEEEe
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIKVN 166 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiKV~ 166 (414)
+.+|++.|+...|++.|+|++-++.+.++ .-++++++.++ .++..+.|++...=. .-..=.+.+++++|.|-
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isvv 404 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEG----LVRDVTFDKDVCVVAVV 404 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHh----cCcceEEeCCEEEEEEE
Confidence 78999999999999999999999776433 22666666432 333344343321100 01122355678888776
Q ss_pred cCccccccccCCHHHHHHHHHhhccCCc
Q 015044 167 ADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 167 ~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
-. .+.+.++-...+++.|...||
T Consensus 405 G~-----gm~~~~gv~~rif~aL~~~~I 427 (465)
T PRK06291 405 GA-----GMAGTPGVAGRIFSALGESGI 427 (465)
T ss_pred cC-----CccCCcChHHHHHHHHHHCCC
Confidence 54 344566677778888888885
No 164
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=82.40 E-value=7.1 Score=40.78 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc---CccEEEEEecCCchhhheeeeEEEE
Q 015044 89 SGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK---LVNVLKVEDFSNEPVIERELMLIKV 165 (414)
Q Consensus 89 pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K---LidVikV~dlt~~~~V~REL~LiKV 165 (414)
+|++.||...|++.|+||+.++.+.++ .-++++++.++ .+...+.|.+ ...+-.| .+.+.+++|.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSV-------EVEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceE-------EEcCCeEEEEE
Confidence 899999999999999999999744443 22666666433 3444444433 2222222 34567888887
Q ss_pred ecCccccccccCCHHHHHHHHHhhccCCc-EEEe
Q 015044 166 NADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIA 198 (414)
Q Consensus 166 ~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEia 198 (414)
-.. .+.+.++-...+++.|...|| +.+.
T Consensus 384 vG~-----~~~~~~g~~a~if~~La~~~Inv~~i 412 (441)
T TIGR00657 384 VGA-----GMKSAPGVASKIFEALAQNGINIEMI 412 (441)
T ss_pred EcC-----CCCCCCchHHHHHHHHHHCCCCEEEE
Confidence 643 355678888889999999886 4444
No 165
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=82.33 E-value=3.1 Score=41.62 Aligned_cols=77 Identities=8% Similarity=-0.082 Sum_probs=53.9
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCC-ceeeEeec-C-chHHHHHHHHhC-CCeEEEEEeCCCCCCCCcCCccccCcc-
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDN-ICCQVMKS-Y-TKKQLITKLSRS-GRKVIIATDHGVGAFLDKIDLLASGSP- 355 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi-~~~~V~Sa-H-~p~~~~~~~~~~-g~~ViIavA~G~sa~Lp~~gvvAg~T~- 355 (414)
++.||+|... .++..+.|++.++ .+..+... + +..+..+.++.. +.++|||+=||...-+. +++|....
T Consensus 27 r~livtd~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~a--K~vA~~~~~ 100 (331)
T cd08174 27 RVAVVSGPGV----GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVA--KYAAFLRGI 100 (331)
T ss_pred ceEEEECCcH----HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHH--HHHHhhcCC
Confidence 6889988776 6678888888777 22233222 2 335555566554 48999999988888888 78877633
Q ss_pred -EEEecCcC
Q 015044 356 -VIGVPVRA 363 (414)
Q Consensus 356 -VIgVP~~~ 363 (414)
+|.||+..
T Consensus 101 p~i~vPTt~ 109 (331)
T cd08174 101 PLSVPTTNL 109 (331)
T ss_pred CEEEecCcc
Confidence 99999865
No 166
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=81.92 E-value=7.1 Score=33.22 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhccCcceeeEEeeecCCCc---E--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCc
Q 015044 89 SGVVDLIDEVFARRGYNIESLAVSGNKDKG---L--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNE 153 (414)
Q Consensus 89 pGVLsRItgLFsRRGyNIeSLtVg~Ted~~---i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~ 153 (414)
..+.+|+..+..+.|.+|.|..+-+....+ . +++.+.|+-..+.++...||.--..+-|++++=.
T Consensus 16 A~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i~ 85 (110)
T PF10741_consen 16 AALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSIQ 85 (110)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEEE
Confidence 367899999999999999999998865543 2 6777889999999999999999999999988744
No 167
>PLN02550 threonine dehydratase
Probab=81.82 E-value=10 Score=42.02 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=76.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC-CcEEE--EEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD-KGLFT--IVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted-~~iiT--IVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+.+..-++||-|.+++.++..+ ||..+.--.... .+.+. |-+. +.+.+++|+..|++.= +++.|+++.+...
T Consensus 420 ~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~-~~~~~~~i~~~l~~~g--~~~~~l~~~~~~~ 494 (591)
T PLN02550 420 LATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH-TEQELQALKKRMESAQ--LRTVNLTSNDLVK 494 (591)
T ss_pred EEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC-CHHHHHHHHHHHHHCC--CCeEeCCCChHHh
Confidence 8999999999999999999987 999887766322 22344 4444 4668999999998854 5888888876652
Q ss_pred eeeeEEE-EecC-ccc---cccccCCHHHHHHHHHhhcc-CCcEEEe
Q 015044 158 RELMLIK-VNAD-PKF---CAEVSGDPGKVAAVQRNSST-VGILEIA 198 (414)
Q Consensus 158 REL~LiK-V~~~-~~~---r~EvTG~~~KIdafi~~L~~-fGIlEia 198 (414)
--|=.+- =+++ ..+ |.++--.|+-+-.|++.|.+ ..|.|+-
T Consensus 495 ~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~ 541 (591)
T PLN02550 495 DHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFH 541 (591)
T ss_pred hhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEE
Confidence 2111110 0000 001 12666678889999999998 5777653
No 168
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=80.91 E-value=2.7 Score=41.65 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=56.7
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
++.||+|...--...++..+.|++. +.+..+ ...+ +. .+..+.+++.+.++|||+=||..--+. ..+|...
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~a--K~ia~~~ 101 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTA--KAVAALL 101 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHH--HHHHHHh
Confidence 6888887765447788888899887 666522 2233 22 455666677789999999977777777 6666654
Q ss_pred ----cEEEecCcC
Q 015044 355 ----PVIGVPVRA 363 (414)
Q Consensus 355 ----~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 102 ~~~~p~i~iPTt~ 114 (332)
T cd07766 102 NRGLPIIIVPTTA 114 (332)
T ss_pred cCCCCEEEEeCCC
Confidence 399999865
No 169
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=80.88 E-value=2.2 Score=43.36 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=42.3
Q ss_pred eEEecccCcC-CHHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 281 DVIIVLQHPS-DYNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 281 ~V~IimGS~S-D~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~s 341 (414)
++.|++|... +....++..+.|++.|+.+..+.. .| +. .+..+.++..++++|||+=||-.
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6788887544 334688999999999998764433 34 22 45566677788999999984433
No 170
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.85 E-value=6.8 Score=30.09 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
+++|++.|+...|++.|+||.-++-+.++. -++++++.+ ..++..+.|.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh 60 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALH 60 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHH
Confidence 468999999999999999999988877632 367777643 3444444443
No 171
>PRK09224 threonine dehydratase; Reviewed
Probab=80.73 E-value=17 Score=39.04 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=72.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+++..-++||-|.+++.+++ +-||..++--... +.+. +.|-+.+.+..+++|++.|++.= .+++++++.+...
T Consensus 331 l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ne~~k 406 (504)
T PRK09224 331 LAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDDELAK 406 (504)
T ss_pred EEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCCHHHH
Confidence 99999999999999999999 6899888765532 2233 44445555555899999997754 4777887765432
Q ss_pred e---ee-----------eEEEEecCccccccccCCHHHHHHHHHhhcc-CCcE
Q 015044 158 R---EL-----------MLIKVNADPKFCAEVSGDPGKVAAVQRNSST-VGIL 195 (414)
Q Consensus 158 R---EL-----------~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~-fGIl 195 (414)
. -| .+++| |+--.|+-+..|++.|.+ ..|.
T Consensus 407 ~h~r~~~g~~~~~~~~e~~~~~--------~fPerpGal~~Fl~~l~~~~~It 451 (504)
T PRK09224 407 LHVRYMVGGRPPKPLDERLYRF--------EFPERPGALLKFLSTLGTHWNIS 451 (504)
T ss_pred HHHHhccCCCCCCCCceEEEEE--------eCCCCCCHHHHHHHhcCCCCeeE
Confidence 1 11 12322 666788999999999987 5563
No 172
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=80.13 E-value=9.4 Score=36.36 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred ccE---EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHH---hcCccEEEEEecC
Q 015044 78 LRR---ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQL---QKLVNVLKVEDFS 151 (414)
Q Consensus 78 Mkr---LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL---~KLidVikV~dlt 151 (414)
|.| |+++-.|+||..++|+...+..|-|+..=-++.-.+.--..+-+.|+-+.+..+..-| .+--|..-+-.-+
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~m~rt 81 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVVMKRT 81 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEEEeec
Confidence 566 8999999999999999999999999986555443333224445667777777776643 3312222111111
Q ss_pred Cchhh-heeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 152 NEPVI-ERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 152 ~~~~V-~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
. ++. ..-..-++|.. +.-.+|+-++.|-.++...||
T Consensus 82 ~-~~~~~a~~~~v~v~v------~a~DrpgIv~~~T~lf~~~~i 118 (176)
T COG2716 82 G-AHPTPANPAPVWVYV------DANDRPGIVEEFTALFDGHGI 118 (176)
T ss_pred C-CCccCCCCceEEEEE------EecCCccHHHHHHHHHHhcCC
Confidence 1 111 22222233333 556678889999999998886
No 173
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=79.54 E-value=2.3 Score=42.80 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=53.7
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC--ch-----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCcccc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY--TK-----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLAS 352 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH--~p-----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg 352 (414)
++.||++..+--....+..+.|++.|+++. .+...+ .| .+..+.+++ +.++|||+=||..--.. ..+|.
T Consensus 25 ~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~a--K~vA~ 101 (348)
T cd08175 25 KALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDIT--KYVSY 101 (348)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHH--HHHHH
Confidence 688888765543346788899999999876 222222 24 344444555 78999999966666666 56655
Q ss_pred Cc--cEEEecCcC
Q 015044 353 GS--PVIGVPVRA 363 (414)
Q Consensus 353 ~T--~VIgVP~~~ 363 (414)
+. ++|.||+..
T Consensus 102 ~~~~p~i~IPTTa 114 (348)
T cd08175 102 KTGIPYISVPTAP 114 (348)
T ss_pred hcCCCEEEecCcc
Confidence 43 399999874
No 174
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=79.27 E-value=5.6 Score=45.44 Aligned_cols=60 Identities=17% Similarity=0.355 Sum_probs=43.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-C---chhHHHHHHHHHhc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-G---TDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-g---de~~veQl~kQL~K 140 (414)
|.|.+.|+||+|.+|+.+|.+-|+||.+--++.-.+.-. |-|.-. | +++..+.|.++|.+
T Consensus 786 iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 786 MELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred EEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999988876655543 444321 2 12223666666543
No 175
>PRK07431 aspartate kinase; Provisional
Probab=79.10 E-value=6.4 Score=42.67 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=66.2
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCC-CcE--EEEEEeCch-hHHHHHHHHHhcCccEEEEEecCCchhhheee
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKD-KGL--FTIVVSGTD-RVLQQVIEQLQKLVNVLKVEDFSNEPVIEREL 160 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted-~~i--iTIVV~gde-~~veQl~kQL~KLidVikV~dlt~~~~V~REL 160 (414)
..+++|.++++.++|+++|+||+.++.....+ .+. ++++++.++ ..+.++.++|++..+...+ .+++.+
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~~~v 519 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDGPAI 519 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEeCCe
Confidence 45789999999999999999999998864333 344 666665332 2344555555543332222 245667
Q ss_pred eEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 161 MLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 161 ~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
++|.|--. .+...++-...+++.|...||
T Consensus 520 a~VSvVG~-----gm~~~~gv~~ri~~aL~~~~I 548 (587)
T PRK07431 520 AKVSIVGA-----GMPGTPGVAARMFRALADAGI 548 (587)
T ss_pred EEEEEECC-----CccCCcCHHHHHHHHHHHCCC
Confidence 77766544 455677888889999999996
No 176
>PRK09181 aspartate kinase; Validated
Probab=79.10 E-value=12 Score=40.08 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEEEe
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIKVN 166 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiKV~ 166 (414)
+++|++.||.+.|.+.|+||+.+..+. .-+++++..+.+.++++.+.|++...--.+ ..+++++|-|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~----~sis~~v~~~~~~~~~~~~~L~~~~~~~~i--------~~~~~a~VsvV 408 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA----NTITHYLWGSLKTLKRVIAELEKRYPNAEV--------TVRKVAIVSAI 408 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC----cEEEEEEcCChHHHHHHHHHHHHhcCCceE--------EECCceEEEEe
Confidence 679999999999999999999765442 236777766533467777777764432111 12667777665
Q ss_pred cCccccccccCCHHHHHHHHHhhccCCc-EEEeccc
Q 015044 167 ADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIARTG 201 (414)
Q Consensus 167 ~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEiaRTG 201 (414)
-. .+ ..++=...+++.|...|| +.+.-+|
T Consensus 409 G~-----gm-~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 409 GS-----NI-AVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred CC-----CC-CcccHHHHHHHHHHHCCCCeEEEEec
Confidence 44 23 256666778899999997 5555555
No 177
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=79.10 E-value=2.9 Score=42.03 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=57.5
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEee-cC-ch-----HHHHHHHHhCCC---eEEEEEeCCCCCCCCcCC
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMK-SY-TK-----KQLITKLSRSGR---KVIIATDHGVGAFLDKID 348 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~S-aH-~p-----~~~~~~~~~~g~---~ViIavA~G~sa~Lp~~g 348 (414)
-++.|+++...--...++..+.|++.|+++. .+.. .. .| .+..+.+++.+. +++||+=||..--+. +
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~a--K 98 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLA--G 98 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHH--H
Confidence 3788888876655578888899999999876 3333 22 33 445555666555 899999977777777 7
Q ss_pred ccccC----ccEEEecCc
Q 015044 349 LLASG----SPVIGVPVR 362 (414)
Q Consensus 349 vvAg~----T~VIgVP~~ 362 (414)
.+|+. .++|.||+.
T Consensus 99 ~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 99 FVAATYMRGIRFIQVPTT 116 (344)
T ss_pred HHHHHHccCCCEEEecCc
Confidence 77642 239999995
No 178
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=78.38 E-value=6.7 Score=40.11 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=43.0
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
++.|++|..... ...+++.+.|++.|+.+..... .| +. .+..+.+++.++++||++=||
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 95 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGG 95 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 688888876544 5788899999999998763322 34 32 556666777889999999843
No 179
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=78.03 E-value=3.1 Score=42.37 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred eEEecccCcC-CHHHHHHHHHHHHHcCCceeeEeecC-ch-----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 281 DVIIVLQHPS-DYNVMQDAIAILCENDNICCQVMKSY-TK-----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 281 ~V~IimGS~S-D~~v~~~a~~~L~~~gi~~~~V~SaH-~p-----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
++.|++|+.- +....++....|++.|+.+..+-... .| .+..+.+++.++++|||+=||..--.. ..+|.+
T Consensus 28 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~a--K~ia~~ 105 (376)
T cd08193 28 RVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVA--KLVAVL 105 (376)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH--HHHHHH
Confidence 6888887642 45567888889999999876333333 33 456666777789999999855444444 344332
Q ss_pred --------------------ccEEEecCcC
Q 015044 354 --------------------SPVIGVPVRA 363 (414)
Q Consensus 354 --------------------T~VIgVP~~~ 363 (414)
.++|.||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 106 AGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 2399999875
No 180
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=78.00 E-value=8.7 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHH
Q 015044 88 ESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQL 138 (414)
Q Consensus 88 ~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL 138 (414)
++|++.|+...+++.|+|+..++.+.++ --++++|+. +..++.++.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~L 60 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKAL 60 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHH
Confidence 7899999999999999999988887752 236666663 3344444444
No 181
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=77.63 E-value=3.9 Score=42.17 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=43.2
Q ss_pred CeEEecccCcC-CHHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 280 TDVIIVLQHPS-DYNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 280 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~s 341 (414)
-+|.||+|... +....++..+.|++.|+.+..+.+ .+ +. .+.++.+++.++++|||+=||-.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 37888887543 334778899999999988763322 33 22 55666677788999999984443
No 182
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=77.53 E-value=3.4 Score=42.15 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=44.1
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
+|.|++|....- ...++..+.|++.|+.+..+.. .| +. .+..+.+++.++++|||+=||-.--..
T Consensus 28 ~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~a 99 (374)
T cd08189 28 KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCA 99 (374)
T ss_pred eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 788888865432 3568888899999998764323 33 22 556666777889999999844443333
No 183
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=77.22 E-value=3.9 Score=41.94 Aligned_cols=80 Identities=20% Similarity=0.195 Sum_probs=59.2
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeec-C-ch-----HHHHHHHHhCCCe---EEEEEeCCCCCCCCcCCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKS-Y-TK-----KQLITKLSRSGRK---VIIATDHGVGAFLDKIDL 349 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~Sa-H-~p-----~~~~~~~~~~g~~---ViIavA~G~sa~Lp~~gv 349 (414)
++.|+++..-.-...++..+.|++.|+++. .+... . .| .+..+.+.+.|++ +|||+=||...-+. +.
T Consensus 25 rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~a--k~ 102 (355)
T cd08197 25 KYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIA--GL 102 (355)
T ss_pred eEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHH--HH
Confidence 688888876544477888999999999877 44432 2 33 4555566677887 99999988888888 88
Q ss_pred cccC----ccEEEecCc
Q 015044 350 LASG----SPVIGVPVR 362 (414)
Q Consensus 350 vAg~----T~VIgVP~~ 362 (414)
+|+. .++|.||+.
T Consensus 103 ~A~~~~rgip~I~IPTT 119 (355)
T cd08197 103 LAALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHHhccCCCEEEecCc
Confidence 8764 339999985
No 184
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=77.19 E-value=3.5 Score=41.85 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=59.7
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEee-cC-ch-----HHHHHHHHhCCC---eEEEEEeCCCCCCCCcCC
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMK-SY-TK-----KQLITKLSRSGR---KVIIATDHGVGAFLDKID 348 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~S-aH-~p-----~~~~~~~~~~g~---~ViIavA~G~sa~Lp~~g 348 (414)
-++.|+++....-...++..+.|++.|+.+. .+.+ .. .| .+..+.+++.|+ +++||+=||...-+. +
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~a--K 109 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLA--G 109 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHH--H
Confidence 3788999887766788889999999999887 3333 22 33 445555666665 999999977777777 7
Q ss_pred ccccC----ccEEEecCcC
Q 015044 349 LLASG----SPVIGVPVRA 363 (414)
Q Consensus 349 vvAg~----T~VIgVP~~~ 363 (414)
.+|+. .++|.||+..
T Consensus 110 ~iA~~~~~gip~i~IPTT~ 128 (358)
T PRK00002 110 FAAATYMRGIRFIQVPTTL 128 (358)
T ss_pred HHHHHhcCCCCEEEcCchh
Confidence 77742 2399999963
No 185
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=76.39 E-value=9.9 Score=30.97 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCcc
Q 015044 88 ESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVN 143 (414)
Q Consensus 88 ~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLid 143 (414)
.+|.-.+|..+|+|.+.+|-+- +.+..-+|+.+.++.+.++++.+.|+|..+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4789999999999999999876 445566999999999999999999988653
No 186
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=76.29 E-value=11 Score=31.16 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=36.2
Q ss_pred EEEEEeCchhHHH----HHHHHHhccCcc-eeeEEeeecCCCcEEEEEEeCc-----hhHHHHHHHHH
Q 015044 81 ISVFVRDESGVVD----LIDEVFARRGYN-IESLAVSGNKDKGLFTIVVSGT-----DRVLQQVIEQL 138 (414)
Q Consensus 81 LSVlVeN~pGVLs----RItgLFsRRGyN-IeSLtVg~Ted~~iiTIVV~gd-----e~~veQl~kQL 138 (414)
..|+|..+||+|. .|.+-+.+.||+ |.++.+| .++++.++++ ++.++++.+.|
T Consensus 3 ~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~G-----K~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 3 VRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVG-----KYIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEE-----EEEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEE-----EEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 5789999999996 678888999999 9999887 3578888766 34455555544
No 187
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=76.20 E-value=5.1 Score=40.92 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=43.4
Q ss_pred eEEecccCcCC-HHHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCCC
Q 015044 281 DVIIVLQHPSD-YNVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 281 ~V~IimGS~SD-~~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G~ 340 (414)
++.||+|..+- ....++..+.|++.|+.+..+ ...| +. .+..+.++..++++|||+=||-
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGS 91 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 68899987654 337788999999999987733 2334 22 5566667778899999998443
No 188
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=76.07 E-value=3.8 Score=41.64 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=45.5
Q ss_pred CeEEecccCcC-C-HHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 280 TDVIIVLQHPS-D-YNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 280 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
.++.|++|..+ . .....+..+.|++.|+.+..+.. .+ +. .+..+.+++.++++|||+=||-.--..
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 37888888765 3 34567888899999998764333 33 22 556666778899999999855444444
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=75.60 E-value=6.8 Score=40.13 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=37.8
Q ss_pred EEEEE---eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 81 ISVFV---RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlV---eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
|++.- .|+||+++|+...|++.|+||.+++ + ...-++++++.+ ..++..+.|.+
T Consensus 340 IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~---~-s~~~is~vv~~~--d~~~av~~Lh~ 396 (401)
T TIGR00656 340 VSIVGAGMVGAPGVASEIFSALEEKNINILMIG---S-SETNISFLVDEK--DAEKAVRKLHE 396 (401)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---c-CCCEEEEEEeHH--HHHHHHHHHHH
Confidence 44444 4899999999999999999999876 1 123377777743 34555555544
No 190
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=75.37 E-value=4.5 Score=41.38 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=42.7
Q ss_pred CeEEecccCcCC--HHHHHHHHHHHHHcCCceeeEe--ecC-ch---HHHHHHHHhCCCeEEEEEeCCC
Q 015044 280 TDVIIVLQHPSD--YNVMQDAIAILCENDNICCQVM--KSY-TK---KQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 280 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~~~V~--SaH-~p---~~~~~~~~~~g~~ViIavA~G~ 340 (414)
-++.||+|..+- ....++..+.|++.|+.+..+. .+| +. .+.++.++..++|+||++=||-
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 97 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGS 97 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChH
Confidence 378899886554 3456788899999998776332 234 22 4556667778899999998443
No 191
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=75.10 E-value=4.2 Score=41.63 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=58.4
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC--c--h---HHHHHHHHhCCC----eEEEEEeCCCCCCCCcC
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY--T--K---KQLITKLSRSGR----KVIIATDHGVGAFLDKI 347 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH--~--p---~~~~~~~~~~g~----~ViIavA~G~sa~Lp~~ 347 (414)
-++.||++....-...++..+.|+..|+++. .+...- . . .+..+.+.+.++ ++|||+=||...-+.
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~a-- 104 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVA-- 104 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHH--
Confidence 4788888776654466788899999999887 344332 2 2 445555666666 999999978888888
Q ss_pred CccccC----ccEEEecCc
Q 015044 348 DLLASG----SPVIGVPVR 362 (414)
Q Consensus 348 gvvAg~----T~VIgVP~~ 362 (414)
+.+|+. .+.|.||+.
T Consensus 105 k~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 105 GLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHHHHhcCCCCEEEEcCc
Confidence 888853 239999995
No 192
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=74.95 E-value=4.3 Score=41.65 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=43.1
Q ss_pred CeEEecccCcC-C-HHHHHHHHHHHHHcCCceeeEeecC-ch-----HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 280 TDVIIVLQHPS-D-YNVMQDAIAILCENDNICCQVMKSY-TK-----KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 280 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~~~V~SaH-~p-----~~~~~~~~~~g~~ViIavA~G~s 341 (414)
-++.|++|..+ + ....++..+.|++.|+.+....+.- .| .+..+.+++.++++|||+=||-.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 37889998654 2 4556888999999999776332222 23 55666677788999999984443
No 193
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=74.05 E-value=8.8 Score=41.23 Aligned_cols=69 Identities=13% Similarity=0.326 Sum_probs=54.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC-chhHHHHHHHHHhcCccEEEEEecC
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG-TDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g-de~~veQl~kQL~KLidVikV~dlt 151 (414)
||.|..+|+.|+..-|..+|..+++||.++-+.+. +.|-+-+.. +.....++++++.++-.|..|....
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 71 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhc
Confidence 48899999999999999999999999999998443 555454433 2345788899998888888875443
No 194
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=73.77 E-value=9.3 Score=38.94 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEecccCcCCHHHHHHHHHHHHH-cCCceeeEeecC--ch-----HHHHHHHHhCC---CeEEEEEeCCCCCCCCcCCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCE-NDNICCQVMKSY--TK-----KQLITKLSRSG---RKVIIATDHGVGAFLDKIDL 349 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~-~gi~~~~V~SaH--~p-----~~~~~~~~~~g---~~ViIavA~G~sa~Lp~~gv 349 (414)
++.|+++..-.-...++..+.|+. .++.+.. .+.- .| .+..+.+.+.| .+++||+=||...-+. +.
T Consensus 25 k~livtd~~v~~~~~~~v~~~L~~~~~~~~~~-~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~a--k~ 101 (344)
T cd08169 25 QYFFISDSGVADLIAHYIAEYLSKILPVHILV-IEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVA--GF 101 (344)
T ss_pred eEEEEECccHHHHHHHHHHHHHHhhcCceEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHH--HH
Confidence 688888877666788889999987 6765542 2321 22 44445565544 7999999978888888 88
Q ss_pred cccC----ccEEEecCc
Q 015044 350 LASG----SPVIGVPVR 362 (414)
Q Consensus 350 vAg~----T~VIgVP~~ 362 (414)
+|+. .+.|.||+.
T Consensus 102 vA~~~~rgip~i~VPTT 118 (344)
T cd08169 102 VASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHHhccCCcEEEecCC
Confidence 8763 339999985
No 195
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=73.62 E-value=4.7 Score=41.13 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=44.5
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCceeeE-eecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICCQV-MKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V-~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
-++.||+|..+= ..++....|++.|+.+..+ .... +. .+..+.+++.++|+|||+=||..--..
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~a 91 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAG 91 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence 378999987653 7888889999999987722 2223 22 556666777889999999855443333
No 196
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=72.99 E-value=2 Score=43.26 Aligned_cols=81 Identities=20% Similarity=0.098 Sum_probs=52.7
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee---eEeecCchHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc--
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC---QVMKSYTKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP-- 355 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~---~V~SaH~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~-- 355 (414)
++.||++..+-....++..+.|++.++.+. .+.+...-.+..+.+++.++++|||+=||..--+. ..+|....
T Consensus 25 ~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~a--K~ia~~~~~p 102 (347)
T cd08172 25 RPLIVTGPRSWAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTA--KAVADRLGVP 102 (347)
T ss_pred eEEEEECHHHHHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHH--HHHHHHhCCC
Confidence 688888866633455555566655566544 23111122666677777889999999966666666 66665433
Q ss_pred EEEecCcC
Q 015044 356 VIGVPVRA 363 (414)
Q Consensus 356 VIgVP~~~ 363 (414)
+|.||+..
T Consensus 103 ~i~VPTT~ 110 (347)
T cd08172 103 VITVPTLA 110 (347)
T ss_pred EEEecCcc
Confidence 99999865
No 197
>PRK08639 threonine dehydratase; Validated
Probab=72.61 E-value=17 Score=37.90 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=51.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC--cEEEEEEeC-chhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK--GLFTIVVSG-TDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~--~iiTIVV~g-de~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+++..-++||-|.+++.+....+-||..+.--...+. +.+.++++. +.+.++++..+|++.= .+++++++.+.+.
T Consensus 339 ~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~~~~~ 416 (420)
T PRK08639 339 FIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINPNEPLY 416 (420)
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCCCHHHH
Confidence 9999999999999999944444449998865432222 335555443 3467899999998864 3555667666554
No 198
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=71.98 E-value=16 Score=38.07 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC--cEEEEEEeC-chhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK--GLFTIVVSG-TDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~--~iiTIVV~g-de~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+++..-++||-|.+++.+....+-||..+.-..+... +.+.++++. +.+.++++.+.|++.= .+++++++.+.+.
T Consensus 328 ~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~~~~~ 405 (409)
T TIGR02079 328 FIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINENDILY 405 (409)
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCCHHHH
Confidence 9999999999999999944444449997776543333 334444442 3467899999988764 3566777766655
Q ss_pred e
Q 015044 158 R 158 (414)
Q Consensus 158 R 158 (414)
.
T Consensus 406 ~ 406 (409)
T TIGR02079 406 N 406 (409)
T ss_pred H
Confidence 3
No 199
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=69.68 E-value=25 Score=34.22 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=49.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEE--EEEEeCchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLF--TIVVSGTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~ii--TIVV~gde~~veQl~kQL~KLidVikV~ 148 (414)
+.+.++++ -+..+...|.+.+++|.++.....+++..+ ++.+. .+...+++..+|.++-+|.+|+
T Consensus 147 ~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 147 LQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 55554443 368888999999999999998876665554 44455 3567889999999999999886
No 200
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=69.55 E-value=38 Score=36.56 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=69.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCC-CcEEEE--EEeCchhHHHHHHHHHhcCccEEEEEecCCchhhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKD-KGLFTI--VVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIE 157 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted-~~iiTI--VV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~ 157 (414)
+++..-++||.|.+++.+++.+ ||..+.--.+.. ...+.+ -+. +.+.+++|+++|++.= .++.|+++.+...
T Consensus 328 l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~-~~~~~~~l~~~L~~~G--y~~~dls~ne~~k 402 (499)
T TIGR01124 328 LAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS-NPQERQEILARLNDGG--YSVVDLTDDELAK 402 (499)
T ss_pred EEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC-CHHHHHHHHHHHHHcC--CCeEECCCCHHHH
Confidence 9999999999999999999984 998887765332 223444 444 4678999999997753 6677777654331
Q ss_pred eeeeEEEE--ec--Cccc---cccccCCHHHHHHHHHhhcc
Q 015044 158 RELMLIKV--NA--DPKF---CAEVSGDPGKVAAVQRNSST 191 (414)
Q Consensus 158 REL~LiKV--~~--~~~~---r~EvTG~~~KIdafi~~L~~ 191 (414)
. .+=.-| +. ..++ |-|.--.|+-+..|++.|.|
T Consensus 403 ~-h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~ 442 (499)
T TIGR01124 403 L-HVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQG 442 (499)
T ss_pred H-HHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC
Confidence 1 000001 00 0111 22666788999999998876
No 201
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=69.22 E-value=20 Score=30.41 Aligned_cols=55 Identities=20% Similarity=0.512 Sum_probs=41.0
Q ss_pred ccEEEEEEeCchhHHH----HHHHHHhccCcc-eeeEEeeecCCCcEEEEEEeC-chhHHHHHHHH
Q 015044 78 LRRISVFVRDESGVVD----LIDEVFARRGYN-IESLAVSGNKDKGLFTIVVSG-TDRVLQQVIEQ 137 (414)
Q Consensus 78 MkrLSVlVeN~pGVLs----RItgLFsRRGyN-IeSLtVg~Ted~~iiTIVV~g-de~~veQl~kQ 137 (414)
|.+..|.|..|||||+ -|.+-+.+.||+ +..+.+| .+|.|.++. +++..++..+.
T Consensus 1 ~~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g-----K~~el~ld~~~~e~a~~~v~~ 61 (83)
T COG1828 1 MYKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG-----KVIELELDAESEEKAEEEVKE 61 (83)
T ss_pred CeEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee-----eEEEEEecCcchhHHHHHHHH
Confidence 3457899999999995 688999999998 8877765 468888876 34344444443
No 202
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=66.96 E-value=19 Score=34.04 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=48.6
Q ss_pred ccE-EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCc-E--EEEEEeCc-hhHHHHHHHHH
Q 015044 78 LRR-ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKG-L--FTIVVSGT-DRVLQQVIEQL 138 (414)
Q Consensus 78 Mkr-LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~-i--iTIVV~gd-e~~veQl~kQL 138 (414)
|+- |.|-.+++||=|-++..=++.-|-||-|+.=...+..+ + +.|++.+| +.....+.+-+
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~ 69 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL 69 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH
Confidence 444 99999999999999999999999999988776655433 3 78888877 56666677666
No 203
>PRK08526 threonine dehydratase; Provisional
Probab=66.65 E-value=21 Score=37.27 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=47.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCC---c--EEEEEEe-CchhHHHHHHHHHhcC
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDK---G--LFTIVVS-GTDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~---~--iiTIVV~-gde~~veQl~kQL~KL 141 (414)
+.+.+-++||-|.+++.++++.|-||..+.-...... + .++++++ -+.+.+++|...|++.
T Consensus 329 ~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 329 LHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred EEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999988653322 2 2555554 2456788888888553
No 204
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.34 E-value=16 Score=42.08 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIV 123 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIV 123 (414)
+.+...|+||.|.+|+++|+.-+.+|.|-.+..-.+.-. +.++
T Consensus 794 lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 794 LEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred EEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 999999999999999999999999999988876554433 4444
No 205
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=65.89 E-value=8.7 Score=39.46 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=43.4
Q ss_pred eEEecccCcCC-HHHHHHHHHHHHHcCCceeeEee--cCch----HHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 281 DVIIVLQHPSD-YNVMQDAIAILCENDNICCQVMK--SYTK----KQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 281 ~V~IimGS~SD-~~v~~~a~~~L~~~gi~~~~V~S--aH~p----~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
+|.||+|...- .....+..+.|++-|+.+..+-. .+.+ .+..+.+++.++++|||+=||-.--..
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 95 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLA 95 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 68888876543 36788889999999998773322 3322 344555666789999999844433333
No 206
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=65.34 E-value=17 Score=37.21 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=44.5
Q ss_pred CeEEecccCcC--CHHHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 280 TDVIIVLQHPS--DYNVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 280 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
-+|.||+|..+ ......+..+.|++.|+.+..+ ...+ +. .+..+.+++.++++|||+=||
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 37999999876 5678889999999999987632 2234 22 555566777889999999833
No 207
>PLN02834 3-dehydroquinate synthase
Probab=65.26 E-value=10 Score=40.21 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=57.5
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee---eEeecC--ch-----HHHHHHHHhCCCe---EEEEEeCCCCCCCCc
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC---QVMKSY--TK-----KQLITKLSRSGRK---VIIATDHGVGAFLDK 346 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~---~V~SaH--~p-----~~~~~~~~~~g~~---ViIavA~G~sa~Lp~ 346 (414)
-++.||++....--+.++..+.|++-|+.+. .+.... ++ .+..+.+.+.|++ +|||+=||...-+.
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~a- 179 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMC- 179 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHH-
Confidence 4788888877665688889999999898655 233322 22 4444556666766 99999988888888
Q ss_pred CCccccC----ccEEEecCc
Q 015044 347 IDLLASG----SPVIGVPVR 362 (414)
Q Consensus 347 ~gvvAg~----T~VIgVP~~ 362 (414)
+++|+. .+.|.||+.
T Consensus 180 -k~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 180 -GFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred -HHHHHHhcCCCCEEEECCc
Confidence 777752 239999995
No 208
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=65.20 E-value=41 Score=38.62 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=59.1
Q ss_pred CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEEEe
Q 015044 87 DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIKVN 166 (414)
Q Consensus 87 N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiKV~ 166 (414)
+.+|++.||.+.|++.|+|++-++.+.++. -+.+++. ....+.+.+.|+++-. ..+=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~--~~~~~~~~~~l~~~~~-------~~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYT--SEVADSALKLLDDAAL-------PGELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEe--HHHHHHHHHHHHhhcC-------CCcEEEeCCeEEEEEe
Confidence 568999999999999999999998663332 3444444 2245566666666421 1222466788888775
Q ss_pred cCccccccccCCHHHHHHHHHhhccCCc
Q 015044 167 ADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 167 ~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
-.. +.+.++-...+++.|.+.+|
T Consensus 398 G~g-----m~~~~gv~~~~f~aL~~~~I 420 (810)
T PRK09466 398 GAG-----VTRNPLHCHRFYQQLKDQPV 420 (810)
T ss_pred CCC-----cccCccHHHHHHHHHHhCCC
Confidence 542 33344555566777777775
No 209
>PRK02047 hypothetical protein; Provisional
Probab=64.04 E-value=62 Score=27.31 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=51.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcc--eeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYN--IESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLK 146 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyN--IeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVik 146 (414)
+.+...|.++..+.|..++.++... -++++.-++....+ +|+.+. .+++.++.|=+.|.+.-.|.-
T Consensus 19 ~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 19 IKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKV 89 (91)
T ss_pred EEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 8999999999999999999998555 56677777777665 455433 357789999999988877743
No 210
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=63.36 E-value=20 Score=31.35 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhccC--cceeeEEeeecC-CCcEEEEEEeC-chhHHHHHHHHHhcCccE
Q 015044 89 SGVVDLIDEVFARRG--YNIESLAVSGNK-DKGLFTIVVSG-TDRVLQQVIEQLQKLVNV 144 (414)
Q Consensus 89 pGVLsRItgLFsRRG--yNIeSLtVg~Te-d~~iiTIVV~g-de~~veQl~kQL~KLidV 144 (414)
.|+|+|+-.+.-..| |.|..+.||.+. ++++..|.|.+ |++.+++|..+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999998776665 899999999765 45677777764 567899999998877654
No 211
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=61.07 E-value=6.6 Score=39.53 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=51.8
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc--
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS-- 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T-- 354 (414)
++.|++|...--...++..+.|++.++..-.-...| +. .+..+.+++.++++|||+=||..--+. .++|.+.
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~a--K~ia~~~~~ 102 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLA--KAIALRTGL 102 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHH--HHHHHHhcC
Confidence 688888866544467778888877643221112234 22 445555666789999999866666666 5555442
Q ss_pred cEEEecCcC
Q 015044 355 PVIGVPVRA 363 (414)
Q Consensus 355 ~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 103 p~i~IPTta 111 (337)
T cd08177 103 PIIAIPTTL 111 (337)
T ss_pred CEEEEcCCc
Confidence 399999864
No 212
>PRK05925 aspartate kinase; Provisional
Probab=61.04 E-value=82 Score=33.60 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch---hHHHHHHHHHhcCccEEEEEecCCchhhheeeeEEE
Q 015044 88 ESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD---RVLQQVIEQLQKLVNVLKVEDFSNEPVIERELMLIK 164 (414)
Q Consensus 88 ~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde---~~veQl~kQL~KLidVikV~dlt~~~~V~REL~LiK 164 (414)
..|.++||.+.|.+.|+||+.++... .-++++++.++ ..++.+.+.+.++- ++ .++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~----~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i-------~~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN----LGVYFTIDDDDISEEYPQHLTDALSAFG---TV-------SCEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC----CEEEEEEechhccHHHHHHHHHHhcCCc---eE-------EEECCEEEEE
Confidence 57889999999999999999886432 13556665332 23444444444321 11 2445677777
Q ss_pred EecCccccccccCCHHHHHHHHHhhccCCc-EEEecccc
Q 015044 165 VNADPKFCAEVSGDPGKVAAVQRNSSTVGI-LEIARTGK 202 (414)
Q Consensus 165 V~~~~~~r~EvTG~~~KIdafi~~L~~fGI-lEiaRTG~ 202 (414)
|--.. +.. ++-...|++.|...|| +.+.-+|-
T Consensus 377 vVG~g-----m~~-~~v~~~~~~aL~~~~Ini~~i~~s~ 409 (440)
T PRK05925 377 MIGAK-----LAS-WKVVRTFTEKLRGYQTPVFCWCQSD 409 (440)
T ss_pred EeCCC-----ccc-ccHHHHHHHHHhhCCCCEEEEECCC
Confidence 65442 222 2346788999999886 44444443
No 213
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=60.36 E-value=30 Score=37.41 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=51.7
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccCcceeeEEeeecCCC-----cE-EEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 80 RISVFVRDE-SGVVDLIDEVFARRGYNIESLAVSGNKDK-----GL-FTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 80 rLSVlVeN~-pGVLsRItgLFsRRGyNIeSLtVg~Ted~-----~i-iTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
.+.+...++ .|.|.++..+|...++||..|---++... .+ +.+-++++...++++++-|.+-.....+..
T Consensus 39 ~~~~~~~~~~~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (457)
T TIGR01269 39 NNQFYIRTKEISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGINL 115 (457)
T ss_pred eEEEEeccCcchhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccccccc
Confidence 345555554 99999999999999999999988765422 23 556667788889999998887665544443
No 214
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=59.10 E-value=4 Score=40.29 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=54.7
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEee-cCch-----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMK-SYTK-----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~S-aH~p-----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
++.||++...--...++..+.|+..|+++..+.. .+.+ .+..+.++..+++++|++=||...-+. =.+|..+
T Consensus 21 ~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~--K~~A~~~ 98 (250)
T PF13685_consen 21 KVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIA--KYAAFEL 98 (250)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHH--HHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHH--HHHHHhc
Confidence 7899999888777778888899999999883321 1222 334444444578999999977777776 4455544
Q ss_pred c--EEEecCcCCCCCCcce
Q 015044 355 P--VIGVPVRASGVTGFPH 371 (414)
Q Consensus 355 ~--VIgVP~~~~~l~G~da 371 (414)
- .|.||+.. +.+|+.+
T Consensus 99 ~~p~isVPTa~-S~DG~aS 116 (250)
T PF13685_consen 99 GIPFISVPTAA-SHDGFAS 116 (250)
T ss_dssp T--EEEEES---SSGGGTS
T ss_pred CCCEEEecccc-ccccccC
Confidence 4 99999976 4455543
No 215
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=58.71 E-value=19 Score=37.62 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=52.4
Q ss_pred HHHcCCceeeE--------eecCchHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCcccc---CccEEEecCcCCCCCCcc
Q 015044 302 LCENDNICCQV--------MKSYTKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLAS---GSPVIGVPVRASGVTGFP 370 (414)
Q Consensus 302 L~~~gi~~~~V--------~SaH~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg---~T~VIgVP~~~~~l~G~d 370 (414)
++.++.+|+.+ .++|......+++.++|+++ |++| |..+..- .|..+ -++|+|+|.-+....|.-
T Consensus 65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdl-Ivfa-GGDGTar--DVa~av~~~vPvLGipaGvk~~Sgvf 140 (355)
T COG3199 65 AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDL-IVFA-GGDGTAR--DVAEAVGADVPVLGIPAGVKNYSGVF 140 (355)
T ss_pred HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceE-EEEe-CCCccHH--HHHhhccCCCceEeeccccceecccc
Confidence 45566677633 33444466777788888665 5677 6666665 55555 455999998664433322
Q ss_pred eeeccCCCCCeEEEEecCCcchHHHHHHHHHhc
Q 015044 371 HQFVEMCPKHAILLVPVNDAKGAARQAMIICDM 403 (414)
Q Consensus 371 aLlvqMP~GvpVatV~Id~~~nAA~~A~~IL~~ 403 (414)
+ ..+.-||.++.+.+.-
T Consensus 141 A----------------~~P~~aa~l~~~~lkg 157 (355)
T COG3199 141 A----------------LSPEDAARLLGAFLKG 157 (355)
T ss_pred c----------------cChHHHHHHHHHHhcc
Confidence 1 3677888888887755
No 216
>PRK06635 aspartate kinase; Reviewed
Probab=58.33 E-value=12 Score=38.27 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=35.5
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
..|+||++.+|...|++.|+||+.++. + ..-+.+++..++ .++..+.|++
T Consensus 350 ~~~~~g~~a~i~~~La~~~Ini~~i~s--s--~~~is~vv~~~d--~~~a~~~Lh~ 399 (404)
T PRK06635 350 MRSHPGVAAKMFEALAEEGINIQMIST--S--EIKISVLIDEKY--LELAVRALHE 399 (404)
T ss_pred CCCCchHHHHHHHHHHHCCCCEEEEEe--c--CCeEEEEEcHHH--HHHHHHHHHH
Confidence 468999999999999999999999863 1 233666776433 4444544443
No 217
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=57.66 E-value=20 Score=40.90 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=57.4
Q ss_pred EEEE---EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCc--cEE--EEEecCCc
Q 015044 81 ISVF---VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLV--NVL--KVEDFSNE 153 (414)
Q Consensus 81 LSVl---VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLi--dVi--kV~dlt~~ 153 (414)
|++. ..++||++.||...|++.|+||+-++.+.++. -++++++.++ .+..++-|++-. +.. ++. .
T Consensus 318 IsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~--sIsf~V~~~d--~~~av~~L~~~f~~el~~~~~~----~ 389 (819)
T PRK09436 318 FNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEY--SISFCVPQSD--AAKAKRALEEEFALELKEGLLE----P 389 (819)
T ss_pred EEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCc--eEEEEEeHHH--HHHHHHHHHHHHHHHhccCCcc----e
Confidence 5554 34689999999999999999999887765432 2677776432 333333333311 000 000 1
Q ss_pred hhhheeeeEEEEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 154 PVIERELMLIKVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 154 ~~V~REL~LiKV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
=.+...+++|.|--. .+.+.++-...+++.|...||
T Consensus 390 i~~~~~valIsvvG~-----gm~~~~gv~arif~aL~~~~I 425 (819)
T PRK09436 390 LEVEENLAIISVVGD-----GMRTHPGIAAKFFSALGRANI 425 (819)
T ss_pred EEEeCCEEEEEEEcc-----CcccCcCHHHHHHHHHHHCCC
Confidence 123456777776544 233344445555566655553
No 218
>PRK00907 hypothetical protein; Provisional
Probab=56.40 E-value=96 Score=26.53 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCc--ceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGY--NIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGy--NIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVi 145 (414)
|.|.-.+++++...|..++.+..- +-+++++-++....+ +|+.+. ..++.++.|=+.|.+.-.|.
T Consensus 20 iKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 20 LSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred EEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 899999999999999999998765 556777777777665 555443 34678999999998887774
No 219
>PRK08210 aspartate kinase I; Reviewed
Probab=56.28 E-value=20 Score=36.92 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.8
Q ss_pred EEEEE---eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhc
Q 015044 81 ISVFV---RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQK 140 (414)
Q Consensus 81 LSVlV---eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~K 140 (414)
||+.- .++||++.|+...|++.|+||.+.+. ....+++++..++ .++..+.|.|
T Consensus 342 isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~----s~~~is~vv~~~~--~~~a~~~Lh~ 398 (403)
T PRK08210 342 VSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD----SHTTIWVLVKEED--MEKAVNALHD 398 (403)
T ss_pred EEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec----CCCEEEEEEcHHH--HHHHHHHHHH
Confidence 55554 37899999999999999999986332 2234777776443 4455555444
No 220
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.73 E-value=51 Score=24.81 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=32.3
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
.+.||++.|+...|++ +||.-++-+.+ +--++++|+.++ .+.+.+.|.
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~~--~~~a~~~Lh 59 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEED--KDEVVQRLH 59 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHHH--HHHHHHHHH
Confidence 3689999999999964 77877666654 234777776433 455555443
No 221
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=54.85 E-value=22 Score=35.95 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=44.1
Q ss_pred eEEecccCcCCHH--HHHHHHHHHHHcCCceeeEe--ecC-ch---HHHHHHHHhCCCeEEEEEeCCC
Q 015044 281 DVIIVLQHPSDYN--VMQDAIAILCENDNICCQVM--KSY-TK---KQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 281 ~V~IimGS~SD~~--v~~~a~~~L~~~gi~~~~V~--SaH-~p---~~~~~~~~~~g~~ViIavA~G~ 340 (414)
+|.||++. +-.. .+++....|++-|+.+..+. ..| +. .+..+.+++.++++|||+= |.
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG-GG 88 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIG-GG 88 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEE-SH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcC-CC
Confidence 89999987 3333 68888889999999998443 455 33 5666677888999999998 54
No 222
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=54.82 E-value=46 Score=27.24 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCcee-eEeecCch-HHHHHHHHhCCCeEEEEEeCCCCC
Q 015044 293 NVMQDAIAILCENDNICC-QVMKSYTK-KQLITKLSRSGRKVIIATDHGVGA 342 (414)
Q Consensus 293 ~v~~~a~~~L~~~gi~~~-~V~SaH~p-~~~~~~~~~~g~~ViIavA~G~sa 342 (414)
...+++.+.+++.|++++ .+...+.+ .++.+..++.+++++|.+.+|.+.
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~ 107 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTS 107 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 445566666677899988 55545666 556666777789999999955554
No 223
>PRK05783 hypothetical protein; Provisional
Probab=54.45 E-value=88 Score=26.43 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=39.3
Q ss_pred EEEEEeCchhHHH----HHHHHHhccCcc-eeeEEeeecCCCcEEEEEEeCc-hhHHHHHHHHH-hcC
Q 015044 81 ISVFVRDESGVVD----LIDEVFARRGYN-IESLAVSGNKDKGLFTIVVSGT-DRVLQQVIEQL-QKL 141 (414)
Q Consensus 81 LSVlVeN~pGVLs----RItgLFsRRGyN-IeSLtVg~Ted~~iiTIVV~gd-e~~veQl~kQL-~KL 141 (414)
..|+|..|+|||+ -|.+-+.++||+ ++++.+| .++.+.++++ ++..++..+++ +||
T Consensus 5 ~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvG-----K~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 5 VELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAG-----KYLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred EEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEee-----EEEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 8899999999995 678888888885 7777765 3578888764 33334444443 554
No 224
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=54.39 E-value=13 Score=36.06 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=38.6
Q ss_pred eEEecccCcCCHHHH-----HHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPSDYNVM-----QDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~SD~~v~-----~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIavA~G 339 (414)
+|+|++|+.|+...+ ..+.+.|++.|+.+..|- .. .+.++.++..++++++...||
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~-~~--~~~~~~~~~~~~D~v~~~~~g 66 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID-PG--EDIAAQLKELGFDRVFNALHG 66 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe-cC--cchHHHhccCCCCEEEEecCC
Confidence 799999999976655 889999999999977542 22 223334444467777766534
No 225
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.25 E-value=52 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=30.2
Q ss_pred eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHH
Q 015044 86 RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQL 138 (414)
Q Consensus 86 eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL 138 (414)
.+.+|++.|+...|++-++++ +..+.+ +--++++|+.+ ..+++++.|
T Consensus 11 ~~~~gv~~~~~~~L~~~~i~~--i~~~~s--~~~is~vv~~~--d~~~av~~L 57 (63)
T cd04920 11 RSLLHKLGPALEVFGKKPVHL--VSQAAN--DLNLTFVVDED--QADGLCARL 57 (63)
T ss_pred ccCccHHHHHHHHHhcCCceE--EEEeCC--CCeEEEEEeHH--HHHHHHHHH
Confidence 478999999999998865444 444443 23477777753 344444443
No 226
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=52.55 E-value=67 Score=33.40 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=72.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCceee---EeecC--ch----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC---cc
Q 015044 288 HPSDYNVMQDAIAILCENDNICCQ---VMKSY--TK----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG---SP 355 (414)
Q Consensus 288 S~SD~~v~~~a~~~L~~~gi~~~~---V~SaH--~p----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~---T~ 355 (414)
+-||+.-+.+-++..+++==...+ +.+.| .+ +++.+.++..|.+|+=+.+ =.++-.+ ..+..+ +.
T Consensus 138 GvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v-~~~ndi~--~a~~~l~g~~d 214 (322)
T COG2984 138 GVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV-TSVNDIP--RAVQALLGKVD 214 (322)
T ss_pred ecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec-CcccccH--HHHHHhcCCCc
Confidence 567777777777766665433332 24444 22 4555556677888887777 6677777 655544 33
Q ss_pred EEEecCcCCCCCCcceee-----ccCC----------CCCeEEEEecC---CcchHHHHHHHHHhccCC
Q 015044 356 VIGVPVRASGVTGFPHQF-----VEMC----------PKHAILLVPVN---DAKGAARQAMIICDMVHP 406 (414)
Q Consensus 356 VIgVP~~~~~l~G~daLl-----vqMP----------~GvpVatV~Id---~~~nAA~~A~~IL~~~~~ 406 (414)
||=+|++.--..+..+++ -+.| .| .+|.+++| -|+.+|..+.+||.-.+|
T Consensus 215 ~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V~~G-a~aA~gvdy~~~G~qtg~~v~~ILkG~~p 282 (322)
T COG2984 215 VIYIPTDNLIVSAIESLLQVANKAKIPLIASDTSSVKEG-ALAALGVDYKDLGKQTGEMVVKILKGKKP 282 (322)
T ss_pred EEEEecchHHHHHHHHHHHHHHHhCCCeecCCHHHHhcC-cceeeccCHHHHHHHHHHHHHHHHcCCCc
Confidence 888887653333444444 1111 34 36888888 599999999999985544
No 227
>PRK04998 hypothetical protein; Provisional
Probab=50.20 E-value=1.4e+02 Score=24.87 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=46.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVi 145 (414)
+.+...+.++.++.|..+|.+..-.-+.++.-++....+ +|+.+. .+++.++.|=+.|.+.-.|+
T Consensus 18 ~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 18 YKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred EEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 889999999999999999977633333455555544444 444432 35678899998988887775
No 228
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.14 E-value=89 Score=24.33 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=41.4
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecCchHHHHHHHHhCCCeEEEEEe
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSYTKKQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH~p~~~~~~~~~~g~~ViIavA 337 (414)
++|.|+.-+..+...+.+.+..|...|+.++ ... .-++...++.++..|+..+|.+.
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEEC
Confidence 4678888788889999999999999999887 332 12555666666777886555554
No 229
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=48.91 E-value=24 Score=36.85 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=35.1
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
..|+||+++||...|++.|+||+.++. ++ .-+++++..++ .++..+-|.
T Consensus 388 ~~~~~g~~a~if~~La~~~Inv~~i~~--se--~~Is~vV~~~d--~~~a~~~Lh 436 (441)
T TIGR00657 388 MKSAPGVASKIFEALAQNGINIEMISS--SE--INISFVVDEKD--AEKAVRLLH 436 (441)
T ss_pred CCCCCchHHHHHHHHHHCCCCEEEEEe--cC--CcEEEEEeHHH--HHHHHHHHH
Confidence 458899999999999999999999983 22 23777776433 344444443
No 230
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.75 E-value=36 Score=35.14 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=42.3
Q ss_pred eEEecccCc-CCHHHHHHHHHHHHHcCCceeeEeec--C-ch---HHHHHHHHhCCCeEEEEEeCCC
Q 015044 281 DVIIVLQHP-SDYNVMQDAIAILCENDNICCQVMKS--Y-TK---KQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 281 ~V~IimGS~-SD~~v~~~a~~~L~~~gi~~~~V~Sa--H-~p---~~~~~~~~~~g~~ViIavA~G~ 340 (414)
+|.|++|+. .......+..+.|++.|+.+....+. + +. .+..+.+++.++|+||++= |.
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiG-GG 98 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLG-GG 98 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeC-Cc
Confidence 788888754 34567889999999999986533333 4 22 5566667778999999998 53
No 231
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=47.13 E-value=31 Score=37.43 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=54.3
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC----ch---HHHHHHHHhC---CCeEEEEEeCCCCCCCCcCCc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY----TK---KQLITKLSRS---GRKVIIATDHGVGAFLDKIDL 349 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH----~p---~~~~~~~~~~---g~~ViIavA~G~sa~Lp~~gv 349 (414)
++.||+..... ...++..+.|+..|+.+. .|.... +. .+..+.+.+. +.+++||+=||...-+. +.
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~A--Kf 287 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLA--GF 287 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHH--HH
Confidence 56666655443 467788888998888655 443322 11 3344555554 47999999988889999 99
Q ss_pred cccC----ccEEEecCc
Q 015044 350 LASG----SPVIGVPVR 362 (414)
Q Consensus 350 vAg~----T~VIgVP~~ 362 (414)
+|+. .++|-||+.
T Consensus 288 vA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 288 VAATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHHHcCCCEEEeCCh
Confidence 9873 349999994
No 232
>PLN02551 aspartokinase
Probab=47.10 E-value=39 Score=36.80 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=39.9
Q ss_pred EEEE--EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--hHHHHHHHHH
Q 015044 81 ISVF--VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--RVLQQVIEQL 138 (414)
Q Consensus 81 LSVl--VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~~veQl~kQL 138 (414)
||+. ..+++|++.|+...|++.|+||+-++.|.++ --++++|+.++ +.++.|-+.+
T Consensus 448 ISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSe--inIS~vV~~~d~~~Av~aLH~~F 507 (521)
T PLN02551 448 ISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASK--VNISLIVNDDEAEQCVRALHSAF 507 (521)
T ss_pred EEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCC--cEEEEEEeHHHHHHHHHHHHHHH
Confidence 5554 2368999999999999999999999987753 23777777542 3444444444
No 233
>PRK08841 aspartate kinase; Validated
Probab=46.69 E-value=44 Score=34.93 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=41.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLi 142 (414)
+++.-++.||++.|+...+++.|+||.+++.+ + --++++|+. +..++.++.|.+-.
T Consensus 321 vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f 376 (392)
T PRK08841 321 LTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTY 376 (392)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 88888899999999999999999999887742 2 227777764 34555555555443
No 234
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=46.53 E-value=35 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=38.9
Q ss_pred eEEecccCcCCHH-----HHHHHHHHHHHcCCceeeEeec-Cch---HHHHHHHHh-----CCCeEEEEEeCCCC
Q 015044 281 DVIIVLQHPSDYN-----VMQDAIAILCENDNICCQVMKS-YTK---KQLITKLSR-----SGRKVIIATDHGVG 341 (414)
Q Consensus 281 ~V~IimGS~SD~~-----v~~~a~~~L~~~gi~~~~V~Sa-H~p---~~~~~~~~~-----~g~~ViIavA~G~s 341 (414)
+|+|++|+.|+.- .+..+.+.|++.|+....+-.- .++ .+..+.+.. ..+++++-++||..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~ 75 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRY 75 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCC
Confidence 5899999999754 5677889999999887633111 111 122222221 35788888886763
No 235
>PRK10586 putative oxidoreductase; Provisional
Probab=46.38 E-value=20 Score=36.89 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=47.8
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecCch----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC--c
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSYTK----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG--S 354 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH~p----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~--T 354 (414)
++.||+|..+=........+.|++-|+.+.. .+-+.+ .+..+..+ .++|+||++=||..-... =.+|.. .
T Consensus 36 ~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~a--K~~a~~~~~ 111 (362)
T PRK10586 36 RAVWIYGERAIAAAQPYLPPAFELPGAKHIL-FRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTA--KALARRLGL 111 (362)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHcCCeEEE-eCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHH--HHHHhhcCC
Confidence 6889998877665556677788988876642 222222 33333332 467999999844433333 233332 2
Q ss_pred cEEEecCcC
Q 015044 355 PVIGVPVRA 363 (414)
Q Consensus 355 ~VIgVP~~~ 363 (414)
++|.||+..
T Consensus 112 p~i~vPT~a 120 (362)
T PRK10586 112 PFVAIPTIA 120 (362)
T ss_pred CEEEEeCCc
Confidence 399999865
No 236
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.90 E-value=60 Score=25.69 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=38.1
Q ss_pred CeEEecccCc---CCHHHHHHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEE
Q 015044 280 TDVIIVLQHP---SDYNVMQDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIAT 336 (414)
Q Consensus 280 ~~V~IimGS~---SD~~v~~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIav 336 (414)
+.|+|+.-+. .+.+.+.+.+..|...|+.++.-.+..++...++.++..|+..+|.+
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iii 61 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVV 61 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEE
Confidence 4788888776 46778888888888889887721222255556666677788654444
No 237
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=45.33 E-value=60 Score=26.43 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.2
Q ss_pred eEEecccCcCCH---HHHHHHHHHHHHcCCcee
Q 015044 281 DVIIVLQHPSDY---NVMQDAIAILCENDNICC 310 (414)
Q Consensus 281 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~~ 310 (414)
+|.|+|-|++|. +.+.++.+.|+++|++|+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~ 41 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFG 41 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeE
Confidence 688888776555 577899999999999999
No 238
>PRK00341 hypothetical protein; Provisional
Probab=44.94 E-value=1.8e+02 Score=24.63 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=48.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcce--eeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNI--ESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNI--eSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVi 145 (414)
+.|.-.++++..+.|..++.|.. .. +++++-++....+ +|+.+. .+++.++.|-+.|.+.-.|.
T Consensus 20 ~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 20 IKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred EEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 89999999999999999998664 55 4555555655555 555443 35778999999998887774
No 239
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=44.61 E-value=48 Score=32.66 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=47.7
Q ss_pred CeEEecccCcCC-----HHHHHHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 280 TDVIIVLQHPSD-----YNVMQDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 280 ~~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
-+|+|++|+.|- +.-++.+.+.|++.|..+..+ ..+ ..+++..+.....++++-+.||..+-.+ .++++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~-~~~-~~~~~~~l~~~~~d~vf~~lhG~~ge~~---~i~~~l 78 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGV-DAS-GKELVAKLLELKPDKCFVALHGEDGENG---RVSALL 78 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEE-cCC-chhHHHHhhccCCCEEEEeCCCCCCCCh---HHHHHH
Confidence 379999999997 456777888888988876533 222 1234455555556554444457766433 444544
Q ss_pred cEEEecCc
Q 015044 355 PVIGVPVR 362 (414)
Q Consensus 355 ~VIgVP~~ 362 (414)
.-.|+|..
T Consensus 79 e~~gip~~ 86 (296)
T PRK14569 79 EMLEIKHT 86 (296)
T ss_pred HHcCCCee
Confidence 44455543
No 240
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=44.55 E-value=49 Score=31.00 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=47.1
Q ss_pred CCCeEEecccCcCCHH---HHHHHHHHHHHcCCce---e--eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCC
Q 015044 278 PRTDVIIVLQHPSDYN---VMQDAIAILCENDNIC---C--QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKID 348 (414)
Q Consensus 278 ~~~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~---~--~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~g 348 (414)
...+++||.+--.+.- -.+.|.+.|++.|++. + +|-+++ -|.-.-+-++...++.+||.- -
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG----------~ 78 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAA----------L 78 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEE----------E
Confidence 4458999988766653 3677889999999753 3 666777 664443334444589999876 6
Q ss_pred ccccCcc
Q 015044 349 LLASGSP 355 (414)
Q Consensus 349 vvAg~T~ 355 (414)
||=|-|+
T Consensus 79 VIrGeT~ 85 (158)
T PRK12419 79 VVDGGIY 85 (158)
T ss_pred EEcCCCc
Confidence 7777776
No 241
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=44.40 E-value=26 Score=35.96 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=51.5
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCC---eEEEEEeCCCCCCCCcCCccc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGR---KVIIATDHGVGAFLDKIDLLA 351 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~---~ViIavA~G~sa~Lp~~gvvA 351 (414)
++.||+...-.--+.+...+.|+ ++.+..+-. .+ +. .+..+.+.+.|+ +++||+-||...-+. +.+|
T Consensus 21 r~lIVtD~~v~~l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~a--k~vA 96 (346)
T cd08196 21 NDVFIVDANVAELYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVT--TFVA 96 (346)
T ss_pred eEEEEECccHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHH--HHHH
Confidence 67888876554446666666665 444332222 23 22 455566777777 899999988888899 8888
Q ss_pred cCcc----EEEecCc
Q 015044 352 SGSP----VIGVPVR 362 (414)
Q Consensus 352 g~T~----VIgVP~~ 362 (414)
+... .|.+|+.
T Consensus 97 ~~~~rgi~~i~iPTT 111 (346)
T cd08196 97 SIYMRGVSWSFVPTT 111 (346)
T ss_pred HHHHcCCCeEEeccc
Confidence 6432 8888874
No 242
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=43.50 E-value=59 Score=33.29 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=42.3
Q ss_pred eEEecccCcCC--HHHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPSD--YNVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~SD--~~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
++.||+|..+- .....+..+.|++.|+++..+.. .| +. .+..+.+++.++++|||+=||
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 91 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGG 91 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 68889886553 45668889999999998763322 34 22 556666777889999999844
No 243
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=43.38 E-value=50 Score=33.88 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=41.6
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeEe--ecC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQVM--KSY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V~--SaH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
++.|++|..... ...++..+.|++.|+.+.... ..+ +. .+..+.+++.++++||++=||
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGG 96 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGG 96 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 788888865433 377888999999999876332 233 22 456666777889999999843
No 244
>PRK06291 aspartate kinase; Provisional
Probab=42.63 E-value=47 Score=35.23 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred EEEEEe---CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcC
Q 015044 81 ISVFVR---DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKL 141 (414)
Q Consensus 81 LSVlVe---N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KL 141 (414)
|++.-+ +++|++.|+...|++.|+||.-++.+.++. -++++|+.++ .++.++.|.+-
T Consensus 401 IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~--~Is~vV~~~d--~~~av~~Lh~~ 460 (465)
T PRK06291 401 VAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEV--NISFVVDEED--GERAVKVLHDE 460 (465)
T ss_pred EEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccC--eEEEEEeHHH--HHHHHHHHHHH
Confidence 555554 689999999999999999999888877642 3777777443 56666665543
No 245
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=42.21 E-value=59 Score=33.37 Aligned_cols=59 Identities=19% Similarity=0.080 Sum_probs=40.7
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
++.|++|..... ...++..+.|++.|+.+..+.. .+ +. .+.++.++..+.++|||+=||
T Consensus 30 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 95 (377)
T cd08188 30 KVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGG 95 (377)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 788888865422 3577888999999998763322 23 22 455666777789999999844
No 246
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=41.44 E-value=56 Score=33.58 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=41.2
Q ss_pred eEEecccCcC-CHHHHHHHHHHHHHcCCceeeEeecC-ch-----HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPS-DYNVMQDAIAILCENDNICCQVMKSY-TK-----KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~S-D~~v~~~a~~~L~~~gi~~~~V~SaH-~p-----~~~~~~~~~~g~~ViIavA~G 339 (414)
+|.|++|... +....++..+.|++.|+.+..+...- .| .+..+.+++.++++||++=||
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 97 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGG 97 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 6888887543 34478889999999999876332222 23 445566777889999999843
No 247
>PRK09181 aspartate kinase; Validated
Probab=41.43 E-value=70 Score=34.48 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=35.9
Q ss_pred EEEEEeC--chhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCc
Q 015044 81 ISVFVRD--ESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGT 127 (414)
Q Consensus 81 LSVlVeN--~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gd 127 (414)
|++.-++ +||+..|+...+++.|+||..++.+.+|. -++++|+.+
T Consensus 405 VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~--~Is~vV~~~ 451 (475)
T PRK09181 405 VSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQV--NMQFVVDED 451 (475)
T ss_pred EEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcc--eEEEEEeHH
Confidence 6665554 89999999999999999999998887642 377777754
No 248
>PRK09034 aspartate kinase; Reviewed
Probab=41.38 E-value=53 Score=34.84 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred EEEE---EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHh
Q 015044 81 ISVF---VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQ 139 (414)
Q Consensus 81 LSVl---VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~ 139 (414)
|++. ..+.||++.|+...|++.|+||+-++.+.++ .-++++|..++ .++..+.|.
T Consensus 388 VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se--~~Is~vV~~~d--~~~av~~LH 445 (454)
T PRK09034 388 IMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE--ISIMFGVKNED--AEKAVKAIY 445 (454)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc--ceEEEEEcHHH--HHHHHHHHH
Confidence 6663 4578999999999999999999999876543 33777776533 444444443
No 249
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.37 E-value=1.3e+02 Score=22.71 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.6
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEE
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIAT 336 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIav 336 (414)
+|.|+.-+..+...+.+.+.-|...|+.++.........+..+.++..|+..++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i 58 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVIL 58 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEE
Confidence 67888777888888999999999999987632222344555666666777554444
No 250
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=41.33 E-value=1.9e+02 Score=23.44 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=51.1
Q ss_pred EEEEEeCc-hhHHHHHHHHHhccCcce-eeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDE-SGVVDLIDEVFARRGYNI-ESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~-pGVLsRItgLFsRRGyNI-eSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|++.-+.+ +++..|++.+--...=-| -++.+--+++.-+-.+++.|+-+.++++.+.|.++=.|..+..
T Consensus 4 it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 4 ITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 34444444 689999999987766444 4445555544445677899999999999999999999988764
No 251
>PLN02828 formyltetrahydrofolate deformylase
Probab=41.27 E-value=81 Score=31.73 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=53.1
Q ss_pred HHHHHhccCcceeeEEeeecCCCcE--EEEEEeCch--hHHHHHHHHHh---cCcc----EEEEEecCCchhhheeeeEE
Q 015044 95 IDEVFARRGYNIESLAVSGNKDKGL--FTIVVSGTD--RVLQQVIEQLQ---KLVN----VLKVEDFSNEPVIERELMLI 163 (414)
Q Consensus 95 ItgLFsRRGyNIeSLtVg~Ted~~i--iTIVV~gde--~~veQl~kQL~---KLid----VikV~dlt~~~~V~REL~Li 163 (414)
|++.+..+|.||.....-..++.++ |++.++.+. -..+++...+. +-.+ -+++.+.+.. .| +++
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r-iav- 75 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPK---YK-IAV- 75 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCC---cE-EEE-
Confidence 5789999999999999887777775 788776432 12455554333 3222 2333332221 12 111
Q ss_pred EEecCccccccccCCHHHHHHHHHhhccCCc
Q 015044 164 KVNADPKFCAEVSGDPGKVAAVQRNSSTVGI 194 (414)
Q Consensus 164 KV~~~~~~r~EvTG~~~KIdafi~~L~~fGI 194 (414)
=++|...-+.++++..+.-.+
T Consensus 76 ----------lvSg~g~nl~~ll~~~~~g~l 96 (268)
T PLN02828 76 ----------LASKQDHCLIDLLHRWQDGRL 96 (268)
T ss_pred ----------EEcCCChhHHHHHHhhhcCCC
Confidence 468899999999988776443
No 252
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=41.14 E-value=61 Score=33.91 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=31.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeee
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSG 113 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~ 113 (414)
|-.+-+..||+|.+|..+|+-|.+|+.+|..-+
T Consensus 284 ivf~~~~gp~vLfkvl~vfa~r~inltkIesRP 316 (377)
T KOG2797|consen 284 IVFFREKGPGVLFKVLSVFAFRSINLTKIESRP 316 (377)
T ss_pred EEEEeecCCchHHHHHHHHHhhhceeeeeeccc
Confidence 778899999999999999999999999999887
No 253
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=40.43 E-value=1.2e+02 Score=24.81 Aligned_cols=53 Identities=25% Similarity=0.550 Sum_probs=34.8
Q ss_pred EEEEEeCchhHHHH----HHHHHhccCcc-eeeEEeeecCCCcEEEEEEeCch-----hHHHHHHHHH
Q 015044 81 ISVFVRDESGVVDL----IDEVFARRGYN-IESLAVSGNKDKGLFTIVVSGTD-----RVLQQVIEQL 138 (414)
Q Consensus 81 LSVlVeN~pGVLsR----ItgLFsRRGyN-IeSLtVg~Ted~~iiTIVV~gde-----~~veQl~kQL 138 (414)
..|.|..+|||+.- |..-+...||+ ++++.++ .++++.++++. +.++.+.++|
T Consensus 3 ~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~-----k~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 3 VEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTG-----KVIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----EEEEEEEcCCChhhHHHHHHHHHHHh
Confidence 35777889999865 55556667997 7776654 34778777654 4455555544
No 254
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=40.07 E-value=63 Score=34.82 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=52.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEe-CchhHHHHHHHHHhcCccEEEEEecCC
Q 015044 80 RISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVS-GTDRVLQQVIEQLQKLVNVLKVEDFSN 152 (414)
Q Consensus 80 rLSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~-gde~~veQl~kQL~KLidVikV~dlt~ 152 (414)
||.|+.+|+-|....+..|+.-|++|.+.+-+ +..++|-+-.. =+-..++.++..|+.+--|..|....-
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi---d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~ 72 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI---DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPW 72 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee---cCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecC
Confidence 48899999999999999999999999998877 33455555443 345677888888877766666655443
No 255
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=39.78 E-value=39 Score=33.90 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=46.9
Q ss_pred eEEecccCcCCH-HHHHHHHHHHHHcCCceeeE--eecC-ch---HHHHHHHHhCCCeEEEEEeCCCCCCCCcC-Ccccc
Q 015044 281 DVIIVLQHPSDY-NVMQDAIAILCENDNICCQV--MKSY-TK---KQLITKLSRSGRKVIIATDHGVGAFLDKI-DLLAS 352 (414)
Q Consensus 281 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V--~SaH-~p---~~~~~~~~~~g~~ViIavA~G~sa~Lp~~-gvvAg 352 (414)
++.||+|..... ...++..+.|++- +.+... ...+ +. .+.++.+++.++++||++=||..--..|. .+++.
T Consensus 24 ~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~ 102 (332)
T cd08180 24 RVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAK 102 (332)
T ss_pred eEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHh
Confidence 688888754322 2556677777765 555411 1233 22 45666677788999999984433333310 11112
Q ss_pred C------ccEEEecCcC
Q 015044 353 G------SPVIGVPVRA 363 (414)
Q Consensus 353 ~------T~VIgVP~~~ 363 (414)
. .++|.||+..
T Consensus 103 ~~~~~~~~p~i~VPTta 119 (332)
T cd08180 103 KLGKKKKPLFIAIPTTS 119 (332)
T ss_pred CCCCCCCCCEEEeCCCC
Confidence 2 2499999865
No 256
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=38.97 E-value=65 Score=34.57 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=33.8
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE-EEEEEeCchhHHHHHHHHH
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL-FTIVVSGTDRVLQQVIEQL 138 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i-iTIVV~gde~~veQl~kQL 138 (414)
..++||+.+|+..-+++.++||..++ ...+ +.++|++++ .++.++-|
T Consensus 393 m~~~~gvaa~~f~aL~~~~ini~~is-----sSe~~Is~vV~~~~--~~~av~~L 440 (447)
T COG0527 393 MRSNPGVAARIFQALAEENINIIMIS-----SSEISISFVVDEKD--AEKAVRAL 440 (447)
T ss_pred cccCcCHHHHHHHHHHhCCCcEEEEE-----cCCceEEEEEccHH--HHHHHHHH
Confidence 35789999999999999999999998 2233 666776433 34444433
No 257
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=37.72 E-value=43 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.6
Q ss_pred cccCCHHHHHHHHHhhccCCc-EEE
Q 015044 174 EVSGDPGKVAAVQRNSSTVGI-LEI 197 (414)
Q Consensus 174 EvTG~~~KIdafi~~L~~fGI-lEi 197 (414)
+++|++++++++++.|+..|+ .|.
T Consensus 51 ~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 51 ELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEECCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999996 453
No 258
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=37.03 E-value=1.4e+02 Score=25.27 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcee-eEeecCch-HHHHHHHHhCCCeEEEEEeCCCCC
Q 015044 295 MQDAIAILCENDNICC-QVMKSYTK-KQLITKLSRSGRKVIIATDHGVGA 342 (414)
Q Consensus 295 ~~~a~~~L~~~gi~~~-~V~SaH~p-~~~~~~~~~~g~~ViIavA~G~sa 342 (414)
++++.+.++..|++++ .+.--..| ..+++..++.+++.||.+.||+++
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~ 116 (146)
T cd01989 67 LLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNH 116 (146)
T ss_pred HHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCc
Confidence 3444555556788877 44322245 567777777889999999988876
No 259
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=36.74 E-value=72 Score=26.62 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=25.9
Q ss_pred eEEecccCcCCH---HHHHHHHHHHHHcCCcee
Q 015044 281 DVIIVLQHPSDY---NVMQDAIAILCENDNICC 310 (414)
Q Consensus 281 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~~ 310 (414)
+|.|.|-|++|+ +.+.+|.+.|+++|++|+
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~ 45 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFA 45 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE
Confidence 788998877555 777899999999999999
No 260
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=36.56 E-value=66 Score=36.89 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=40.5
Q ss_pred CeEEecccCcC-CHHHHHHHHHHHH--HcCCceeeEee--cC-ch---HHHHHHHHhCCCeEEEEEeCCC
Q 015044 280 TDVIIVLQHPS-DYNVMQDAIAILC--ENDNICCQVMK--SY-TK---KQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 280 ~~V~IimGS~S-D~~v~~~a~~~L~--~~gi~~~~V~S--aH-~p---~~~~~~~~~~g~~ViIavA~G~ 340 (414)
-++.||+|... +.....+..+.|+ ..|+.+..+.+ .+ +. .+.++.+++.++++||++=||-
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGS 550 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGS 550 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 37888887543 3336778888888 66776553322 23 22 5566667778999999998443
No 261
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=36.52 E-value=1.2e+02 Score=24.51 Aligned_cols=58 Identities=19% Similarity=0.341 Sum_probs=38.4
Q ss_pred EEEEEeCc---hhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEe-CchhHHHHHHHHHh
Q 015044 81 ISVFVRDE---SGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVS-GTDRVLQQVIEQLQ 139 (414)
Q Consensus 81 LSVlVeN~---pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~-gde~~veQl~kQL~ 139 (414)
++|.|.|- +|+=.+++..|..+||.+.+..-.+..+ ..-+|... +++...++|.++|.
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 66777774 6889999999999999995543333222 23444443 45566777777664
No 262
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=36.11 E-value=72 Score=31.27 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 88 ESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 88 ~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
.|.-|..|...|...||.|++-.+.-....- +.+ -..+-+.+.+++..|+.+.||.+|++
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~-v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNNP-VEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS--EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCCC-ccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 5888999999999999999876665333221 222 12234567788889999999999985
No 263
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=35.97 E-value=1e+02 Score=24.62 Aligned_cols=55 Identities=15% Similarity=0.000 Sum_probs=38.4
Q ss_pred EEecccCc---CCHHHHHHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEE
Q 015044 282 VIIVLQHP---SDYNVMQDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIAT 336 (414)
Q Consensus 282 V~IimGS~---SD~~v~~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIav 336 (414)
|+|+.=+. +-.+.+.+....|...|+.++--.+..++..-++.+...|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEE
Confidence 56666666 56788999999999999887622233377777777777787554443
No 264
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=35.92 E-value=1e+02 Score=34.99 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=45.8
Q ss_pred EEEEE-eCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEe---Cch----hHHHHHHHHHhcCccEE
Q 015044 81 ISVFV-RDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVS---GTD----RVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 81 LSVlV-eN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~---gde----~~veQl~kQL~KLidVi 145 (414)
++|.. -+++|.|.|++++++-.|.+|.|=.+.. +...+-+.+|. |.+ .-.+++...+..-++++
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 549 FTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 88888 9999999999999999999999999877 44445444443 332 22344444556556655
No 265
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=35.61 E-value=51 Score=34.44 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=53.3
Q ss_pred eEEecccCcCC---HHHHHHHHHHHHHcCCcee---eEe------ecC-ch---HHHHHHHHhCCCe---EEEEEeCCCC
Q 015044 281 DVIIVLQHPSD---YNVMQDAIAILCENDNICC---QVM------KSY-TK---KQLITKLSRSGRK---VIIATDHGVG 341 (414)
Q Consensus 281 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~~---~V~------SaH-~p---~~~~~~~~~~g~~---ViIavA~G~s 341 (414)
++.||++..-. .+..++..+.|++-|+++. .+. ..+ .+ .+..+.+...+.+ +|||+=||..
T Consensus 44 r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv 123 (389)
T PRK06203 44 KVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGAV 123 (389)
T ss_pred eEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcHH
Confidence 68888865443 2455777788888888653 221 222 21 3444555565665 9999998888
Q ss_pred CCCCcCCccccCc----cEEEecCc
Q 015044 342 AFLDKIDLLASGS----PVIGVPVR 362 (414)
Q Consensus 342 a~Lp~~gvvAg~T----~VIgVP~~ 362 (414)
.-+. +.+|+.. +.|.||+.
T Consensus 124 ~D~a--k~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 124 LDMV--GYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHH--HHHHHHhcCCCCEEEEcCC
Confidence 8888 8888632 39999986
No 266
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=35.06 E-value=1.7e+02 Score=23.95 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecCch----HHHHHHHHhCCCeEEEEEe
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSYTK----KQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH~p----~~~~~~~~~~g~~ViIavA 337 (414)
+++.++....-|-+++. .+++.||+..-+-.|-+.. .+.++.++ .|..+.|+..
T Consensus 10 ~~~~~lvS~s~DGe~ia---~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpD 67 (74)
T PF04028_consen 10 RKIAALVSRSRDGELIA---RVLERFGFRTIRGSSSRGGARALREMLRALK-EGYSIAITPD 67 (74)
T ss_pred CCEEEEEccCcCHHHHH---HHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCC
Confidence 56777777777877754 4889999997777776622 66666676 6889999887
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.96 E-value=1.3e+02 Score=30.29 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=43.7
Q ss_pred CeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch-HHHHHHHHhCCC-eEEEEEe
Q 015044 280 TDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK-KQLITKLSRSGR-KVIIATD 337 (414)
Q Consensus 280 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p-~~~~~~~~~~g~-~ViIavA 337 (414)
.+|-||.-+.||..+..+|.+-+ .+|-.|. .|.|.- |. .++.++.. .|+ -|+||..
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~~eIA~raa-eGADlvlIATD 66 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTNVEIAKRAA-EGADLVLIATD 66 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCchHHHHHHhh-ccCCEEEEeec
Confidence 48999999999999999987765 4888999 999988 55 77777654 366 4566655
No 268
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=34.83 E-value=1e+02 Score=32.20 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=40.8
Q ss_pred eEEecccCcC-CHHHHHHHHHHHHHcCCceeeEe--ecC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 281 DVIIVLQHPS-DYNVMQDAIAILCENDNICCQVM--KSY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 281 ~V~IimGS~S-D~~v~~~a~~~L~~~gi~~~~V~--SaH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
+|.|++|... .....++..+.|++.|+.+.... ..+ +. .+.++.+++.++++|||+=||
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGG 90 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6788887543 23357888889999999887332 234 32 455566777889999999844
No 269
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=33.57 E-value=1.2e+02 Score=32.62 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcE---EEEEEeCchhHHHHHHHHHhcCc
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGL---FTIVVSGTDRVLQQVIEQLQKLV 142 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~i---iTIVV~gde~~veQl~kQL~KLi 142 (414)
+.+...|++|-|.|+..+|...+.||..|-.-+++..+- +-+-++.+...+.++++-|..-.
T Consensus 39 ~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~~ 103 (461)
T KOG3820|consen 39 LIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQNH 103 (461)
T ss_pred EEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHhc
Confidence 778889999999999999999999999999988876642 44456677778888887765543
No 270
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=33.54 E-value=1.6e+02 Score=24.56 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=49.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecC-CCcE--EEEEEeCchhHHHHHHHHHhcCccEEEEEecCCchhh
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNK-DKGL--FTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFSNEPVI 156 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Te-d~~i--iTIVV~gde~~veQl~kQL~KLidVikV~dlt~~~~V 156 (414)
+++..-.+||.|-+....+..+. ||--++=--+. +.+. +-|-+... +.++++.++|+++= ..+.|+|+.+..
T Consensus 13 ~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~~-~~~~~l~~~L~~~g--y~~~dls~ne~~ 87 (91)
T PF00585_consen 13 FAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPDA-EDLEELIERLKALG--YPYEDLSDNELA 87 (91)
T ss_dssp EEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SST-HHHHHHHHHHTSSS---EEECTTT-HHH
T ss_pred EEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCCH-HHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 89999999999999999987766 67777665433 3454 55566544 44899999999884 677888877654
No 271
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=33.51 E-value=1.3e+02 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhccCcceeeEEeeecCCC--cEEEEEEeCchhHHHHHHHHHhcCc
Q 015044 90 GVVDLIDEVFARRGYNIESLAVSGNKDK--GLFTIVVSGTDRVLQQVIEQLQKLV 142 (414)
Q Consensus 90 GVLsRItgLFsRRGyNIeSLtVg~Ted~--~iiTIVV~gde~~veQl~kQL~KLi 142 (414)
.+|++++.-|. -.+||-+=++....+. |.|++-+.|+++.+++..++|+..-
T Consensus 17 piis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 17 PIISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp CHHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 35555554442 2345555455544443 4589999999999999999998763
No 272
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.39 E-value=1.2e+02 Score=29.77 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=43.3
Q ss_pred ccCcCCHHHHHHHHHHHHHcCCceeeEeecC--chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 286 LQHPSDYNVMQDAIAILCENDNICCQVMKSY--TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 286 mGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH--~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
+|+.......+++.+.|++.|+.+..+.+-+ ...++.+++...++++|| ++ |..+.+- -|+-++
T Consensus 19 sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vv-v~-GGDGTi~--evv~~l 84 (306)
T PRK11914 19 SGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALV-VV-GGDGVIS--NALQVL 84 (306)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEE-EE-CCchHHH--HHhHHh
Confidence 4666667778889999999999887444333 446777776667778765 55 6666665 555444
No 273
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=33.26 E-value=1.4e+02 Score=27.67 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCCeEEecccCcCCH---HHHHHHHHHHHHcCCcee-----eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcC
Q 015044 277 DPRTDVIIVLQHPSDY---NVMQDAIAILCENDNICC-----QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKI 347 (414)
Q Consensus 277 D~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~~-----~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~ 347 (414)
....+|+||.+.-.+. .-.+.|.+.|++.|+..+ .|-++. =|...-+-++..+++.+||..
T Consensus 10 ~~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG---------- 79 (154)
T PRK00061 10 AKGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALG---------- 79 (154)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEe----------
Confidence 3446999999998888 778889999999996533 556666 554443334555689999977
Q ss_pred CccccCcc---EEEecCcCCCCCCcceee-ccCCCCCeEE----EE-------------ecCCcchHHHHHHHHHhcc
Q 015044 348 DLLASGSP---VIGVPVRASGVTGFPHQF-VEMCPKHAIL----LV-------------PVNDAKGAARQAMIICDMV 404 (414)
Q Consensus 348 gvvAg~T~---VIgVP~~~~~l~G~daLl-vqMP~GvpVa----tV-------------~Id~~~nAA~~A~~IL~~~ 404 (414)
-||=|-|. .|.=-+.. | |. +++=.|+||. |+ ..|-|..||..|.+++.+.
T Consensus 80 ~VIrG~T~H~e~V~~~v~~----g---l~~v~l~~~~PV~~GVLt~~~~eQa~~R~~~~~~nkG~eaa~aal~m~~l~ 150 (154)
T PRK00061 80 AVIRGETPHFDYVANEVAK----G---LADVSLETGVPVGFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLL 150 (154)
T ss_pred eEEcCCCchHHHHHHHHHH----H---HHHHHhccCCCEEEEecCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHH
Confidence 67777776 33211111 1 22 4444444422 21 1146777888888888764
No 274
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=33.03 E-value=80 Score=29.46 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHH--cCCcee--eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc-EEEecCcCCC
Q 015044 292 YNVMQDAIAILCE--NDNICC--QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP-VIGVPVRASG 365 (414)
Q Consensus 292 ~~v~~~a~~~L~~--~gi~~~--~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~-VIgVP~~~~~ 365 (414)
++-...|.+.|++ .|+.++ +|-++. -|.-..+-+++.++|.+||.- -|+-|-|+ .--| .+
T Consensus 12 ~~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG----------~VIrGeT~Hfd~V--~v-- 77 (151)
T TIGR01506 12 YDMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLG----------WVGPEEKDKLSYH--EA-- 77 (151)
T ss_pred hhHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEec----------eEEcCCCCcEeHH--HH--
Confidence 4456689999999 666666 666676 554443334445689999865 78888888 3333 11
Q ss_pred CCCcceee-ccCCCCCeEEEEe----------------cCCcchHHHHHHHHHhcc
Q 015044 366 VTGFPHQF-VEMCPKHAILLVP----------------VNDAKGAARQAMIICDMV 404 (414)
Q Consensus 366 l~G~daLl-vqMP~GvpVatV~----------------Id~~~nAA~~A~~IL~~~ 404 (414)
-.| |. +++=.|+||.-|- .|.|..||..|..++.+.
T Consensus 78 s~G---L~~lsl~~~~PVi~VlT~e~eeQA~~Rag~~~~nkG~eaA~aaleMi~l~ 130 (151)
T TIGR01506 78 STG---LIQVQLMTNKHVIDVTVHEDEAEDPEELKVLADNRAREHAQNLIMLLFKP 130 (151)
T ss_pred HHH---HHHHHhhhCCCEEEEEeeCCHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 112 22 5666666754431 256788999999998873
No 275
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=32.61 E-value=1.2e+02 Score=23.32 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCCcee
Q 015044 291 DYNVMQDAIAILCENDNICC 310 (414)
Q Consensus 291 D~~v~~~a~~~L~~~gi~~~ 310 (414)
.=+.+++|...|++.|++|+
T Consensus 10 ~C~~C~ka~~~L~~~gi~~~ 29 (73)
T cd03027 10 GCEDCTAVRLFLREKGLPYV 29 (73)
T ss_pred CChhHHHHHHHHHHCCCceE
Confidence 34789999999999999999
No 276
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=32.23 E-value=89 Score=32.53 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=39.7
Q ss_pred eEEecccCc-CCHHHHHHHHHHHHHcCCceeeEeecC-ch-----HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 281 DVIIVLQHP-SDYNVMQDAIAILCENDNICCQVMKSY-TK-----KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 281 ~V~IimGS~-SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p-----~~~~~~~~~~g~~ViIavA~G~s 341 (414)
++.|++|+. .+....++..+.|++-|+.+......- .| .+..+.+++.++|+|||+= |.|
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavG-GGS 117 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFG-GGS 117 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeC-ChH
Confidence 455555432 234567889999999999876222222 33 4566667778999999998 544
No 277
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=30.89 E-value=1.6e+02 Score=24.01 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=35.0
Q ss_pred EEEEEeCchhHHHH----HHHHHhccCcc-eeeEEeeecCCCcEEEEEEeCc-----hhHHHHHHHHH
Q 015044 81 ISVFVRDESGVVDL----IDEVFARRGYN-IESLAVSGNKDKGLFTIVVSGT-----DRVLQQVIEQL 138 (414)
Q Consensus 81 LSVlVeN~pGVLsR----ItgLFsRRGyN-IeSLtVg~Ted~~iiTIVV~gd-----e~~veQl~kQL 138 (414)
..|.|..+|||+.- |..-+.+.||+ ++++.++ ..+++.++++ ++.++.+.++|
T Consensus 3 ~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~-----k~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 3 VKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQG-----KYFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----EEEEEEEcCCchhhhHHHHHHHHHHh
Confidence 46788899999864 56667778997 7776554 2477776663 33455555544
No 278
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=30.88 E-value=82 Score=33.17 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred CcccCCCCCeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-ch------HHHHHHHHhCCC---eEEEEEeCCC
Q 015044 272 IERVTDPRTDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TK------KQLITKLSRSGR---KVIIATDHGV 340 (414)
Q Consensus 272 ~~~~~D~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p------~~~~~~~~~~g~---~ViIavA~G~ 340 (414)
+....++. +++||+-.+=.--+.++....|+..|+..+ .+...- .. .+..+.+-+.++ +.+|++=||.
T Consensus 27 l~~~~~~~-k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGv 105 (360)
T COG0337 27 LAELLAGR-KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGV 105 (360)
T ss_pred hhhhccCC-eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChH
Confidence 34444444 788888777666689999999999999987 555544 22 222333333333 8899999899
Q ss_pred CCCCCcCCccccCcc----EEEecCc
Q 015044 341 GAFLDKIDLLASGSP----VIGVPVR 362 (414)
Q Consensus 341 sa~Lp~~gvvAg~T~----VIgVP~~ 362 (414)
-+-|. |.+||--- .|-||+.
T Consensus 106 igDla--GF~Aaty~RGv~fiqiPTT 129 (360)
T COG0337 106 IGDLA--GFAAATYMRGVRFIQIPTT 129 (360)
T ss_pred HHHHH--HHHHHHHHcCCCeEeccch
Confidence 99999 99998533 9999985
No 279
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.69 E-value=1.4e+02 Score=31.48 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.2
Q ss_pred eEEecccCc-CCHHHHHHHHHHHHHcCCceeeEeecC-ch-----HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 281 DVIIVLQHP-SDYNVMQDAIAILCENDNICCQVMKSY-TK-----KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 281 ~V~IimGS~-SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p-----~~~~~~~~~~g~~ViIavA~G~s 341 (414)
++.||++.. .....+++..+.|++-|++|.-....- .| .+-.+.+++.+.|.|||+= |.|
T Consensus 31 r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalG-GGS 97 (377)
T COG1454 31 RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALG-GGS 97 (377)
T ss_pred ceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC-Ccc
Confidence 677888765 567799999999999999988333332 34 4555667888899999998 655
No 280
>PRK06455 riboflavin synthase; Provisional
Probab=30.27 E-value=1.1e+02 Score=28.62 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=59.0
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcC--Ccee--eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCEND--NICC--QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP 355 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~g--i~~~--~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~ 355 (414)
+|+|+-.-=++..-.+-|.+.|+++| +.++ +|-++. -|.-..+-+++.+++.+||.- -|..+.+.
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG----------~VG~t~h~ 72 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALG----------MPGPTEKD 72 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEec----------ceeccCcc
Confidence 57777777777777899999999977 4444 566666 555444445556789999864 23222222
Q ss_pred -EEEecCcCCCCCCcceee-ccCCCCCeEEEEecC
Q 015044 356 -VIGVPVRASGVTGFPHQF-VEMCPKHAILLVPVN 388 (414)
Q Consensus 356 -VIgVP~~~~~l~G~daLl-vqMP~GvpVatV~Id 388 (414)
+|+==++. | |. +|+=.|+||.-|-+.
T Consensus 73 d~Va~~vS~----G---L~~lsL~t~~PVi~v~vh 100 (155)
T PRK06455 73 KYCAHEASI----G---LIMAQLMTNKHIIEVFVH 100 (155)
T ss_pred hhHHHHHHH----H---HHHHHhhhCCCEEEEEec
Confidence 44322222 2 33 888899999888775
No 281
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=29.83 E-value=2.9e+02 Score=22.57 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=46.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeC-chhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSG-TDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~g-de~~veQl~kQL~KLidVikV~d 149 (414)
-|++|.=+|+-+..|..-+.. +...-+...++.|.+-+++.+ +.+.+.+..++|+.|-.|+.+.-
T Consensus 6 ss~vV~~~p~~~~~v~~~l~~----~~gvEVh~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 6 SSLVVHARPERLEEVAEALAA----IPGVEVHAVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp EEEEEEE-CCCHHHHHHHHCC----STTEEEEEEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred EEEEEEECchhHHHHHHHHHc----CCCcEEEeeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 578888899999999888876 333445433344876666653 45678888889999999999864
No 282
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=29.75 E-value=69 Score=31.29 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=37.9
Q ss_pred eEEecccCcCC-----HHHHHHHHHHHHHcCCceeeEeecCchHHHHHHHHhCCCeEEEEEeCCC
Q 015044 281 DVIIVLQHPSD-----YNVMQDAIAILCENDNICCQVMKSYTKKQLITKLSRSGRKVIIATDHGV 340 (414)
Q Consensus 281 ~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~~~V~SaH~p~~~~~~~~~~g~~ViIavA~G~ 340 (414)
+|+|++|+.|= +..++.+.+.|+++|..+..+-..-...+.++.+ ..+|+++-.+||.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~--~~~D~v~~~~~g~ 64 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQL--KSFDVVFNVLHGT 64 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhc--cCCCEEEEeCCCC
Confidence 69999999884 4567888899999999877543211222222222 2467777777676
No 283
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.17 E-value=1e+02 Score=32.07 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCC-cee-eEeecC---ch------HHHHHHHHh-CCCeEEEEEeCCCCCCCCcCCccccCc---c--
Q 015044 293 NVMQDAIAILCENDN-ICC-QVMKSY---TK------KQLITKLSR-SGRKVIIATDHGVGAFLDKIDLLASGS---P-- 355 (414)
Q Consensus 293 ~v~~~a~~~L~~~gi-~~~-~V~SaH---~p------~~~~~~~~~-~g~~ViIavA~G~sa~Lp~~gvvAg~T---~-- 355 (414)
...++..+-++.-|- +|- -.-++| .+ .|..++.+. -.+|-++++. |-.+..+ |.++++. .
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~-gs~gT~A--Gl~~g~~~~~~~~ 208 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAP-GSGGTHA--GLLVGLAQLGPDV 208 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeC-CCcchHH--HHHHHhhhccCCC
Confidence 445555555555444 444 222234 33 445555553 4568888888 9999999 9999986 2
Q ss_pred -EEEecCcCC
Q 015044 356 -VIGVPVRAS 364 (414)
Q Consensus 356 -VIgVP~~~~ 364 (414)
|||||++..
T Consensus 209 ~ViG~~v~~~ 218 (323)
T COG2515 209 EVIGIDVSAD 218 (323)
T ss_pred ceEEEeecCC
Confidence 999999873
No 284
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=1.3e+02 Score=29.45 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCCceeecCCCcccccccCcC---cccCCCCCeEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecC-ch-HHHHHH-H
Q 015044 252 ERGPVYCAGSVPLLEAADSSI---ERVTDPRTDVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSY-TK-KQLITK-L 325 (414)
Q Consensus 252 ~~gdvy~v~~~~~~~~~~~~~---~~~~D~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH-~p-~~~~~~-~ 325 (414)
-+|||-.++.+ ..+|+- .=+++|.|++. ...+|++.+.+|.++. +.|-|.| .. .+++++ +
T Consensus 91 l~g~v~f~~~d----v~~~~~~~dtvimNPPFG~~---~rhaDr~Fl~~Ale~s-------~vVYsiH~a~~~~f~~~~~ 156 (198)
T COG2263 91 LLGDVEFVVAD----VSDFRGKFDTVIMNPPFGSQ---RRHADRPFLLKALEIS-------DVVYSIHKAGSRDFVEKFA 156 (198)
T ss_pred hCCceEEEEcc----hhhcCCccceEEECCCCccc---cccCCHHHHHHHHHhh-------heEEEeeccccHHHHHHHH
Confidence 45777776654 122221 22446666655 4559999999999885 6889999 55 777766 5
Q ss_pred HhCCCeEEEE
Q 015044 326 SRSGRKVIIA 335 (414)
Q Consensus 326 ~~~g~~ViIa 335 (414)
++.|.+|...
T Consensus 157 ~~~G~~v~~~ 166 (198)
T COG2263 157 ADLGGTVTHI 166 (198)
T ss_pred HhcCCeEEEE
Confidence 5667666544
No 285
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=28.54 E-value=57 Score=32.45 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=39.2
Q ss_pred EEecccC--cCCHHHHHHHHHHHHHcCCcee---eEeecC-----ch----HHHHHHHHhCCCeEEEEEeCCCCCC
Q 015044 282 VIIVLQH--PSDYNVMQDAIAILCENDNICC---QVMKSY-----TK----KQLITKLSRSGRKVIIATDHGVGAF 343 (414)
Q Consensus 282 V~IimGS--~SD~~v~~~a~~~L~~~gi~~~---~V~SaH-----~p----~~~~~~~~~~g~~ViIavA~G~sa~ 343 (414)
|+||.=| ..|.+..+++.+.|+.+|.++. .+...| ++ .++.+.+++..++.|+++- |..++
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~r-GGyg~ 75 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCAR-GGYGA 75 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES---SS-G
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEee-ccccH
Confidence 4555545 5688999999999999999866 222222 22 5566667777789999999 55444
No 286
>PRK11175 universal stress protein UspE; Provisional
Probab=28.34 E-value=1.8e+02 Score=27.98 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=31.5
Q ss_pred HHHHHHHcCCceeeEeecC-ch-HHHHHHHHhCCCeEEEEEeCCCCCC
Q 015044 298 AIAILCENDNICCQVMKSY-TK-KQLITKLSRSGRKVIIATDHGVGAF 343 (414)
Q Consensus 298 a~~~L~~~gi~~~~V~SaH-~p-~~~~~~~~~~g~~ViIavA~G~sa~ 343 (414)
..+.++++|++..++.-.+ .+ ..+.+..+..+++.+|.+++|+++.
T Consensus 228 l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~ 275 (305)
T PRK11175 228 MKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGL 275 (305)
T ss_pred HHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCC
Confidence 4455567888866333355 66 4455667777899999999888754
No 287
>PRK13337 putative lipid kinase; Reviewed
Probab=28.03 E-value=1.5e+02 Score=29.22 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=43.4
Q ss_pred cCcCCHHHHHHHHHHHHHcCCcee-eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 287 QHPSDYNVMQDAIAILCENDNICC-QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 287 GS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
|+........+....|++.|++++ ...... ...++.+++.+.+.+++| ++ |..+.+- .|+.++
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv-v~-GGDGTl~--~vv~gl 77 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVI-AA-GGDGTLN--EVVNGI 77 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEE-EE-cCCCHHH--HHHHHH
Confidence 444434566677888999999988 334333 557778777777777655 55 7788887 777664
No 288
>PRK14421 acylphosphatase; Provisional
Probab=27.88 E-value=87 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
...|.+.|++.|+++.++++++.|.+--.--+|+.++
T Consensus 39 ~~dG~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~ 75 (99)
T PRK14421 39 RRDGSVEALFAGPADAVAEMIARCRRGPSAARVDAVE 75 (99)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 4456799999999999999999987754444444443
No 289
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.82 E-value=2.2e+02 Score=24.33 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=38.7
Q ss_pred CeEEecccC--cCCHHHHHHHHHHHHHcCCcee-eEeecCchHHHHHHHHhCCCeEEEEE
Q 015044 280 TDVIIVLQH--PSDYNVMQDAIAILCENDNICC-QVMKSYTKKQLITKLSRSGRKVIIAT 336 (414)
Q Consensus 280 ~~V~IimGS--~SD~~v~~~a~~~L~~~gi~~~-~V~SaH~p~~~~~~~~~~g~~ViIav 336 (414)
.+|.|+.-+ ......+.+.+..|...|+.++ ... -+....++.++..|+..+|-+
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~--~sl~kqlk~A~k~g~~~~iii 84 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS--GSIGRRYARQDEIGTPFCVTV 84 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC--CCHHHHHHHhHhcCCCEEEEE
Confidence 477777777 6667788888888888899888 332 345666667777787654443
No 290
>PRK14444 acylphosphatase; Provisional
Probab=27.78 E-value=83 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=27.7
Q ss_pred cCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 114 NKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 114 Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
+.+.|.+.|.+.|+++.++++++.|.+.-.-.+|+.+
T Consensus 38 N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i 74 (92)
T PRK14444 38 NLSDGRVEAVFEGSRPAVQKMISWCYSGPSHARVERV 74 (92)
T ss_pred ECCCCcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3355678999999999999999999866544444443
No 291
>PRK14429 acylphosphatase; Provisional
Probab=27.41 E-value=94 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.0
Q ss_pred cCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 114 NKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 114 Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+.+.|.+.|.+.|+++.++++++.|.+=-.-.+|++++
T Consensus 36 N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~ 73 (90)
T PRK14429 36 NCEDGSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVT 73 (90)
T ss_pred ECCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 33556789999999999999999997644444455443
No 292
>PRK14435 acylphosphatase; Provisional
Probab=27.24 E-value=74 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=26.7
Q ss_pred CcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 117 KGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 117 ~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
.|.+.|++.|+++.++++++.|.+--.--+|+.++
T Consensus 39 dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~ 73 (90)
T PRK14435 39 DGSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVS 73 (90)
T ss_pred CCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 36799999999999999999998764444444443
No 293
>PRK14451 acylphosphatase; Provisional
Probab=27.21 E-value=82 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=29.4
Q ss_pred cCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 114 NKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 114 Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+...|.+.|.+.|+++.++++++.|.+--.--+|++++
T Consensus 37 N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~ 74 (89)
T PRK14451 37 NLADGRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCT 74 (89)
T ss_pred ECCCCCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEE
Confidence 33456689999999999999999998865556666554
No 294
>PRK15138 aldehyde reductase; Provisional
Probab=27.18 E-value=1e+02 Score=31.95 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=36.2
Q ss_pred CeEEecccCcCC--HHHHHHHHHHHHHcCCceeeEe--ecC-ch---HHHHHHHHhCCCeEEEEEeCC
Q 015044 280 TDVIIVLQHPSD--YNVMQDAIAILCENDNICCQVM--KSY-TK---KQLITKLSRSGRKVIIATDHG 339 (414)
Q Consensus 280 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~~~V~--SaH-~p---~~~~~~~~~~g~~ViIavA~G 339 (414)
-++.|++|+.|- .....+..+.|+ |+.+..+. ..| +. .+..+.+++.++|+|||+= |
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG-G 94 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVG-G 94 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeC-C
Confidence 378899886552 344566777775 66554222 234 22 4555566778899999998 5
No 295
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=26.95 E-value=1.1e+02 Score=35.19 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=43.3
Q ss_pred EEEEEe---CchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCch--hHHHHHHHHHhcCccEEEEEec
Q 015044 81 ISVFVR---DESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGTD--RVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 81 LSVlVe---N~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gde--~~veQl~kQL~KLidVikV~dl 150 (414)
|++.-+ +.+|++.|+...|++.|+||..++.+.++. -++++|+.++ +.++.|-+.+..--..++|--+
T Consensus 399 IsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~--~Is~vV~~~d~~~al~~LH~~f~~~~~~~~i~l~ 471 (819)
T PRK09436 399 ISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSER--SISVVIDNDDATKALRACHQSFFLSDQVLDVFVI 471 (819)
T ss_pred EEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccc--eEEEEEcHHHHHHHHHHHHHHHhcccccccEEEE
Confidence 555544 689999999999999999999888776632 2666665432 3344444444222244454444
No 296
>PRK14423 acylphosphatase; Provisional
Probab=26.94 E-value=1.1e+02 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
...|.+.|++.|+++.++++++.|.+-..-.+|++++
T Consensus 40 ~~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~ 76 (92)
T PRK14423 40 LDDGRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVE 76 (92)
T ss_pred CCCCeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEE
Confidence 3556789999999999999999997765555555544
No 297
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.86 E-value=2.5e+02 Score=27.62 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=42.2
Q ss_pred cCcCCHHHHHHHHHHHHHcCCceeeEeecC--chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 287 QHPSDYNVMQDAIAILCENDNICCQVMKSY--TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 287 GS~SD~~v~~~a~~~L~~~gi~~~~V~SaH--~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
|..+......+....|++.|+.++-...-| ...++.+++...+++++| ++ |..+.+- -|+.++
T Consensus 8 ~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv-~~-GGDGTi~--ev~ngl 72 (293)
T TIGR03702 8 GKQADNEDVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVI-AG-GGDGTLR--EVATAL 72 (293)
T ss_pred CCccchhHHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEE-EE-cCChHHH--HHHHHH
Confidence 433444566777888999999988324333 446777776666777666 56 7788777 666665
No 298
>PRK14449 acylphosphatase; Provisional
Probab=26.55 E-value=1.1e+02 Score=25.39 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=27.5
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
.+.|-+.|.+.|+++.++++++.|.+=-.-.+|++++
T Consensus 38 ~~dG~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 38 LYDGSVEVVAEGDEENIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred CCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 3445789999999999999999997644455555543
No 299
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=26.20 E-value=71 Score=29.09 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=42.4
Q ss_pred eEEecccCcCCH---HHHHHHHHHHHHcCCcee-----eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccc
Q 015044 281 DVIIVLQHPSDY---NVMQDAIAILCENDNICC-----QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLA 351 (414)
Q Consensus 281 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~~-----~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvA 351 (414)
+++||.+.-.+. .-.+.|.+.|++.|+..+ .|-++. -|.-.-+-++..+++.+||.. -||=
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG----------~VIr 71 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALG----------CVIR 71 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEe----------eEEe
Confidence 456665554443 234678889999999855 556666 554443334445689999877 6777
Q ss_pred cCcc
Q 015044 352 SGSP 355 (414)
Q Consensus 352 g~T~ 355 (414)
|-|.
T Consensus 72 G~T~ 75 (138)
T TIGR00114 72 GGTP 75 (138)
T ss_pred CCCc
Confidence 7776
No 300
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=26.08 E-value=1e+02 Score=32.16 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=54.2
Q ss_pred CeEEecccCcCCH---HHHHHHHHHHHHcCCcee-----eEeecC----ch----HHHHHHHHhCCCe---EEEEEeCCC
Q 015044 280 TDVIIVLQHPSDY---NVMQDAIAILCENDNICC-----QVMKSY----TK----KQLITKLSRSGRK---VIIATDHGV 340 (414)
Q Consensus 280 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~~-----~V~SaH----~p----~~~~~~~~~~g~~---ViIavA~G~ 340 (414)
-++.||+...-.- ...++....|++-|++++ .+.... +. .+..+.+.+.|++ ++||+-||.
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 3688888765543 345677777777786543 122121 21 2445556666776 999999898
Q ss_pred CCCCCcCCccccC----ccEEEecCc
Q 015044 341 GAFLDKIDLLASG----SPVIGVPVR 362 (414)
Q Consensus 341 sa~Lp~~gvvAg~----T~VIgVP~~ 362 (414)
..-+. |.+|+. .+.|.||+.
T Consensus 111 v~D~a--g~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAV--GYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHH--HHHHHHhcCCCCEEEECCC
Confidence 88999 999873 239999987
No 301
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.86 E-value=92 Score=34.21 Aligned_cols=105 Identities=19% Similarity=0.124 Sum_probs=67.0
Q ss_pred ccCcCCHHHHHHHHHHHHHcCCcee-eEeecC--chHHHH-HHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc--EEEe
Q 015044 286 LQHPSDYNVMQDAIAILCENDNICC-QVMKSY--TKKQLI-TKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP--VIGV 359 (414)
Q Consensus 286 mGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH--~p~~~~-~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~--VIgV 359 (414)
+=|.|. ..+-+..++.+++...+ ++.... ...+.+ +.++..|+||||+-- |-++-|- ..+. ||-+
T Consensus 19 ~~~~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsrG-~ta~~i~------~~~~iPVv~i 89 (538)
T PRK15424 19 TVSVSR--LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAAG-SNGAYLK------SRLSVPVILI 89 (538)
T ss_pred EeeHHH--HHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEECc-hHHHHHH------hhCCCCEEEe
Confidence 446666 45577788889998766 543333 345555 446667899999965 6665555 3333 8887
Q ss_pred cCcCCCCCCcceee-ccCCCCC--eEEEEecCCcchHHHHHHHHHhcc
Q 015044 360 PVRASGVTGFPHQF-VEMCPKH--AILLVPVNDAKGAARQAMIICDMV 404 (414)
Q Consensus 360 P~~~~~l~G~daLl-vqMP~Gv--pVatV~Id~~~nAA~~A~~IL~~~ 404 (414)
+++. .|.|- +.-..+. .+|+|+-.+-...+..-..+|++.
T Consensus 90 ~~s~-----~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~ 132 (538)
T PRK15424 90 KPSG-----FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR 132 (538)
T ss_pred cCCH-----hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc
Confidence 7754 56544 3333222 499998888777776666666553
No 302
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=25.84 E-value=2.2e+02 Score=27.76 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHcCCcee-eEeecC-ch--------------HHHHHHHHhCCCeEEEE
Q 015044 289 PSDYNVMQDAIAILCENDNICC-QVMKSY-TK--------------KQLITKLSRSGRKVIIA 335 (414)
Q Consensus 289 ~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p--------------~~~~~~~~~~g~~ViIa 335 (414)
.+|++.+++..+.|.+.||++. -|+-.| .+ .++++.++++|..|+.=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 5999999999999999999988 776555 33 44666677788776654
No 303
>PRK13055 putative lipid kinase; Reviewed
Probab=25.49 E-value=1.9e+02 Score=29.26 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=44.4
Q ss_pred ccCcCCHHHHHHHHHHHHHcCCcee-eEeecC--chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccC
Q 015044 286 LQHPSDYNVMQDAIAILCENDNICC-QVMKSY--TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASG 353 (414)
Q Consensus 286 mGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH--~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~ 353 (414)
+|+.+......++...|++.|+.++ ....-+ ...++.+.+...+++++| ++ |..+.|- -|+.++
T Consensus 13 sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vv-v~-GGDGTl~--evvngl 79 (334)
T PRK13055 13 SGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLII-AA-GGDGTIN--EVVNGI 79 (334)
T ss_pred CCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEE-EE-CCCCHHH--HHHHHH
Confidence 4666666777888899999999888 444434 346677777666788766 45 6777776 666654
No 304
>PRK00861 putative lipid kinase; Reviewed
Probab=25.46 E-value=1.9e+02 Score=28.41 Aligned_cols=64 Identities=17% Similarity=0.036 Sum_probs=44.3
Q ss_pred ccCcCCHHHHHHHHHHHHHcCCcee-eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc
Q 015044 286 LQHPSDYNVMQDAIAILCENDNICC-QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS 354 (414)
Q Consensus 286 mGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T 354 (414)
+|+.+.....+++...|++ +++|+ ...... ...++.+++.+.+.+++|+ + |..+.|- .|+.++.
T Consensus 13 sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~-~-GGDGTl~--evv~~l~ 78 (300)
T PRK00861 13 AGQGNPEVDLALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIA-S-GGDGTLS--AVAGALI 78 (300)
T ss_pred CCCCchhhhHHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEE-E-CChHHHH--HHHHHHh
Confidence 3555555666778888887 57777 454444 5577887776677887664 6 7888887 7777764
No 305
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=25.26 E-value=55 Score=34.38 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=54.4
Q ss_pred eEEecccCcCCHHHHHHHHHHHHHcCCceeeEeecCch----HHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCcc-
Q 015044 281 DVIIVLQHPSDYNVMQDAIAILCENDNICCQVMKSYTK----KQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGSP- 355 (414)
Q Consensus 281 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~SaH~p----~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~- 355 (414)
++.|++|-..---..++..+.|+..|.....+..-+.. .+..+.+...+.+++|++=||..--.. =++|-..-
T Consensus 32 ~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~a--K~~A~~~~~ 109 (360)
T COG0371 32 RALVVTGENTYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTA--KAAAYRLGL 109 (360)
T ss_pred ceEEEEChhHHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHH--HHHHHHcCC
Confidence 68889999888888888888999988844444444422 333333433568999999866655555 33333322
Q ss_pred -EEEecCcC
Q 015044 356 -VIGVPVRA 363 (414)
Q Consensus 356 -VIgVP~~~ 363 (414)
+|.||+..
T Consensus 110 pfIsvPT~A 118 (360)
T COG0371 110 PFISVPTIA 118 (360)
T ss_pred CEEEecCcc
Confidence 99999876
No 306
>PRK14425 acylphosphatase; Provisional
Probab=25.04 E-value=1.1e+02 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.0
Q ss_pred cCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 114 NKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 114 Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+...|-+.|++.|+++.++++++.|.+--.--+|+.++
T Consensus 40 N~~dGsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~ 77 (94)
T PRK14425 40 NESDGSVTALIAGPDSAISAMIERFRRGPPGASVSGVE 77 (94)
T ss_pred ECCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 33456799999999999999999998765555555543
No 307
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=24.93 E-value=1.6e+02 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhccC--cceeeEEeeecC-CCcEEEEEEeC-chhHHHHHHHHHhcCc
Q 015044 89 SGVVDLIDEVFARRG--YNIESLAVSGNK-DKGLFTIVVSG-TDRVLQQVIEQLQKLV 142 (414)
Q Consensus 89 pGVLsRItgLFsRRG--yNIeSLtVg~Te-d~~iiTIVV~g-de~~veQl~kQL~KLi 142 (414)
.|+|+|+....-.-| |.|+.+.+|.+. |+++-+|.|.+ +++.+++|..||.++=
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~~G 72 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELIDLG 72 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHHcC
Confidence 588999988877665 999999999765 55677776764 5688999999988763
No 308
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=24.74 E-value=99 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCcee----eEeecCch---HHHHHHHHhCCCeEEEEEe
Q 015044 294 VMQDAIAILCENDNICC----QVMKSYTK---KQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 294 v~~~a~~~L~~~gi~~~----~V~SaH~p---~~~~~~~~~~g~~ViIavA 337 (414)
+-++|.++|++|||+|+ .+.-+|.+ ..++.+.-+.|+++|-.+.
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~ 131 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVS 131 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHHhcCceeeecce
Confidence 35689999999999998 34434433 3344444445777765443
No 309
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=24.42 E-value=50 Score=30.90 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=46.5
Q ss_pred CeEEecccCcCCHH---HHHHHHHHHHHcCCcee-----eEeecC-chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCcc
Q 015044 280 TDVIIVLQHPSDYN---VMQDAIAILCENDNICC-----QVMKSY-TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLL 350 (414)
Q Consensus 280 ~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~~-----~V~SaH-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvv 350 (414)
.+++|+.+-=.+.- -.+.|.+.|+++|..++ +|-++. -|.-..+-++...++.||+.. -||
T Consensus 13 ~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG----------~VI 82 (152)
T COG0054 13 LRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALG----------AVI 82 (152)
T ss_pred ceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEe----------eEE
Confidence 47888877655532 35678899999998876 556666 664333334444589999977 788
Q ss_pred ccCcc
Q 015044 351 ASGSP 355 (414)
Q Consensus 351 Ag~T~ 355 (414)
=|-|.
T Consensus 83 rG~T~ 87 (152)
T COG0054 83 RGETY 87 (152)
T ss_pred eCCCc
Confidence 88887
No 310
>PRK14430 acylphosphatase; Provisional
Probab=24.40 E-value=1.1e+02 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.6
Q ss_pred cCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 114 NKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 114 Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
+...|.+.|.++|+++.+++++..|.+--.-.+|++++
T Consensus 38 N~~dGsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~ 75 (92)
T PRK14430 38 NRADGTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVE 75 (92)
T ss_pred ECCCCcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEE
Confidence 33456689999999999999999987755555555544
No 311
>PRK14445 acylphosphatase; Provisional
Probab=24.12 E-value=99 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=26.5
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
...|.+.|.+.|+++.++++++.|.+--.--+|++
T Consensus 39 ~~dG~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~ 73 (91)
T PRK14445 39 LPDGTVEIEAQGSSGMIDELIKQAERGPSRSSVTS 73 (91)
T ss_pred CCCCeEEEEEEECHHHHHHHHHHHHhCCCCcEEEE
Confidence 34566899999999999999999987544344443
No 312
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.04 E-value=1.5e+02 Score=28.88 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=43.4
Q ss_pred CCCCCeEEecccCcCCHHHHHHHHHHHHHcCCcee-eEeecC--ch---HHHHHHHHhCCCeEEEEEe
Q 015044 276 TDPRTDVIIVLQHPSDYNVMQDAIAILCENDNICC-QVMKSY--TK---KQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 276 ~D~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~-~V~SaH--~p---~~~~~~~~~~g~~ViIavA 337 (414)
.+...++.-+.-+.||...+.++.+..++.|.... .+..++ ++ .++.+.+.+.|.+.| .++
T Consensus 95 ~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~ 161 (263)
T cd07943 95 ADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVT 161 (263)
T ss_pred HHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEc
Confidence 34334555556688999999999999999999877 665555 55 455666677788764 555
No 313
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=23.77 E-value=50 Score=35.60 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=44.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEE---Ee--CchhHHHHHHHHHhcCccE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIV---VS--GTDRVLQQVIEQLQKLVNV 144 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIV---V~--gde~~veQl~kQL~KLidV 144 (414)
+++.+.++||-.++++.+...+++++.++--...-...++|-. +. ...+..+||..++.|..|.
T Consensus 376 l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~~~~~~~d~ 444 (457)
T KOG1250|consen 376 LLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQKLKKAYDI 444 (457)
T ss_pred eeeecccCCCcchhhHHhhcccccchhhhhhhHHHhhhheEEEEEEEEecccHHHHHHHHHhhhheecc
Confidence 8899999999999999999999999999877665555554432 21 1233455555555554443
No 314
>PRK14433 acylphosphatase; Provisional
Probab=23.40 E-value=99 Score=25.74 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=25.0
Q ss_pred CcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 117 KGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 117 ~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
.|.+.|++.|+++.++++++.|.+--.--+|++
T Consensus 38 dG~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~ 70 (87)
T PRK14433 38 DGRVEVVAEGPKEALERLLHWLRRGPRHARVEA 70 (87)
T ss_pred CCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEE
Confidence 366889999999999999999987544333433
No 315
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.11 E-value=2.2e+02 Score=22.95 Aligned_cols=31 Identities=6% Similarity=-0.139 Sum_probs=25.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCcee-eEeecCch
Q 015044 288 HPSDYNVMQDAIAILCENDNICC-QVMKSYTK 318 (414)
Q Consensus 288 S~SD~~v~~~a~~~L~~~gi~~~-~V~SaH~p 318 (414)
+.++=|++.+|.+.|++.|+.|+ ....-|.+
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~ 38 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP 38 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH
Confidence 45567899999999999999999 56666644
No 316
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=22.89 E-value=86 Score=33.24 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCcee-eEeecC-ch---HHHHHHHHhCCC-eEEEEEeCCCCCCCCcCCccccCcc
Q 015044 295 MQDAIAILCENDNICC-QVMKSY-TK---KQLITKLSRSGR-KVIIATDHGVGAFLDKIDLLASGSP 355 (414)
Q Consensus 295 ~~~a~~~L~~~gi~~~-~V~SaH-~p---~~~~~~~~~~g~-~ViIavA~G~sa~Lp~~gvvAg~T~ 355 (414)
|..-+..+..=| +. .++|+| .+ ..+.+.++..|+ .++++++ |+++.|. .|..+++.
T Consensus 252 msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~d-g~~~~l~--~V~~~~~~ 313 (373)
T KOG2835|consen 252 MSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVD-GRDNLLS--IVQMPNGV 313 (373)
T ss_pred HhhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecc-ccccccc--ceeccCCc
Confidence 333333334444 44 789999 55 777778887888 7899999 9999999 99999984
No 317
>PRK14645 hypothetical protein; Provisional
Probab=22.59 E-value=2.8e+02 Score=25.67 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=50.1
Q ss_pred EeCchhHHHHHHHHHhccCcceeeEEeeecCCCcEEEEEEeCc-h-----hHHHHHHHHHhcCccEE
Q 015044 85 VRDESGVVDLIDEVFARRGYNIESLAVSGNKDKGLFTIVVSGT-D-----RVLQQVIEQLQKLVNVL 145 (414)
Q Consensus 85 VeN~pGVLsRItgLFsRRGyNIeSLtVg~Ted~~iiTIVV~gd-e-----~~veQl~kQL~KLidVi 145 (414)
.+|+.-+-..+..+....||-+..+.+.......+++|.++.+ . +..+++-+++..++|+.
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 4678888899999999999999999998777667788888752 2 46778888999999864
No 318
>PRK14420 acylphosphatase; Provisional
Probab=22.58 E-value=99 Score=25.66 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 116 DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 116 d~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
..|.+.|.+.|+++.++++++.|.+=-.-.+|++
T Consensus 38 ~dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~ 71 (91)
T PRK14420 38 DDGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTD 71 (91)
T ss_pred CCCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEE
Confidence 4567899999999999999999965433333333
No 319
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=22.34 E-value=1.4e+02 Score=29.18 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCceeecCC-CcccccccCcCcccCCCCCeEEecccCcCCHHHHHHHHHHHHHcCCcee--eEeecC-chHHHHHHHHhC
Q 015044 253 RGPVYCAGS-VPLLEAADSSIERVTDPRTDVIIVLQHPSDYNVMQDAIAILCENDNICC--QVMKSY-TKKQLITKLSRS 328 (414)
Q Consensus 253 ~gdvy~v~~-~~~~~~~~~~~~~~~D~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~~--~V~SaH-~p~~~~~~~~~~ 328 (414)
|.||--+.+ ||++..-.+...+.... -+|-||=|=+| ..-.+.++|++.+ .+.|.| ++.++++.+...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~~~-~~v~iIPgiSS-------~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~~~ 139 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKFSC-EEVEIIPGISS-------VQLAAARLGWPLQDTEVISLHGRPVELLRPLLEN 139 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhcCc-cceEEecChhH-------HHHHHHHhCCChHHeEEEEecCCCHHHHHHHHhC
Confidence 345554444 66654444444444443 36777766544 4446678999998 999999 998888876667
Q ss_pred CCeEEEEEe
Q 015044 329 GRKVIIATD 337 (414)
Q Consensus 329 g~~ViIavA 337 (414)
|.+++|-..
T Consensus 140 ~~~~vil~~ 148 (210)
T COG2241 140 GRRLVILTP 148 (210)
T ss_pred CceEEEeCC
Confidence 778887765
No 320
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=22.22 E-value=2.7e+02 Score=28.58 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHcCCcee-eEeecCchH---HHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 298 AIAILCENDNICC-QVMKSYTKK---QLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 298 a~~~L~~~gi~~~-~V~SaH~p~---~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
....|+++|+... ...-.|.+. +.++.+.+.|++++|... |++..--
T Consensus 184 l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTG-Gtsvg~~ 234 (312)
T cd03522 184 LRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTG-GASVDPD 234 (312)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeC-CcccCCc
Confidence 4456899999877 445467664 444444445689999987 8776543
No 321
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=21.91 E-value=53 Score=36.94 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCCcee--eEeecCchHHHHHH---HHhCCCeEEEEEeCCCCCCCCcCCccccCcc
Q 015044 291 DYNVMQDAIAILCENDNICC--QVMKSYTKKQLITK---LSRSGRKVIIATDHGVGAFLDKIDLLASGSP 355 (414)
Q Consensus 291 D~~v~~~a~~~L~~~gi~~~--~V~SaH~p~~~~~~---~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~ 355 (414)
|..+|. .+|++||+..+ +|+-=|+|....+- .++.| -+|++.||.|.+--|-.-+||.|.
T Consensus 507 ~e~~c~---~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~G--kl~VIDGGfskAYqk~TGIAGYTL 571 (640)
T PF06874_consen 507 DEEICD---KILEEFGLDPERGHIINGHVPVKVKKGESPIKANG--KLIVIDGGFSKAYQKTTGIAGYTL 571 (640)
T ss_pred CHHHHH---HHHHHhCCCCCCCeEECCccccccCCCCCCccCCC--EEEEEcChhhhhhccccCccceEE
Confidence 444544 59999999877 99999999554432 33333 456678899999987788999987
No 322
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.86 E-value=2.7e+02 Score=27.01 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=46.0
Q ss_pred cCcCCHHHHHHHHHHHHHcCCceeeEeecC--chHHHHHHHHhCCCeEEEEEeCCCCCCCCcCCccccCc-----cEEE-
Q 015044 287 QHPSDYNVMQDAIAILCENDNICCQVMKSY--TKKQLITKLSRSGRKVIIATDHGVGAFLDKIDLLASGS-----PVIG- 358 (414)
Q Consensus 287 GS~SD~~v~~~a~~~L~~~gi~~~~V~SaH--~p~~~~~~~~~~g~~ViIavA~G~sa~Lp~~gvvAg~T-----~VIg- 358 (414)
|+.......+++...|++.|++++-...-+ ...++.+...+.+++++|+ + |..+.+- .++-++- +.||
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv-~-GGDGTl~--~v~~~l~~~~~~~~lgi 88 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIA-G-GGDGTIN--EVVNALIQLDDIPALGI 88 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEE-E-CCCChHH--HHHHHHhcCCCCCcEEE
Confidence 555566778888999999999988433333 2244455554556776664 5 7777766 5555431 2677
Q ss_pred ecCcC
Q 015044 359 VPVRA 363 (414)
Q Consensus 359 VP~~~ 363 (414)
+|.-+
T Consensus 89 iP~Gt 93 (293)
T TIGR00147 89 LPLGT 93 (293)
T ss_pred EcCcC
Confidence 67644
No 323
>PRK14448 acylphosphatase; Provisional
Probab=21.83 E-value=1.2e+02 Score=25.27 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 116 DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 116 d~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
..|.+.|++.|+++.++++++-|.+--.-.+|+.++
T Consensus 38 ~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~ 73 (90)
T PRK14448 38 PDGSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVI 73 (90)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEE
Confidence 346689999999999999999987755445555443
No 324
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.71 E-value=7.4e+02 Score=24.01 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=53.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCcceeeEEeee--cCC-CcEEEEEEeCchhHHHHHHHHHhcCccEEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRGYNIESLAVSG--NKD-KGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVE 148 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRGyNIeSLtVg~--Ted-~~iiTIVV~gde~~veQl~kQL~KLidVikV~ 148 (414)
+++-|+|--....+|..+-.+.|-.|++-.... ..+ ....+|++.=+.+.++.+..+|.++=.|..-.
T Consensus 54 l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~ 124 (262)
T PF14257_consen 54 LSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRN 124 (262)
T ss_pred EEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeee
Confidence 999999999999999999999998899999862 222 22355555555678999999999887665544
No 325
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=21.65 E-value=1.5e+02 Score=31.69 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=43.0
Q ss_pred eEEeccc-CcCCHHHHHHHHHHHHHcCCceeeEeecC------chHHHHHHHHhCCCeEEEEEeCCCCCC
Q 015044 281 DVIIVLQ-HPSDYNVMQDAIAILCENDNICCQVMKSY------TKKQLITKLSRSGRKVIIATDHGVGAF 343 (414)
Q Consensus 281 ~V~IimG-S~SD~~v~~~a~~~L~~~gi~~~~V~SaH------~p~~~~~~~~~~g~~ViIavA~G~sa~ 343 (414)
++.+++- .-+-++-.+.+.+.|++-||+|+-.-... +-.+-++-++...++.||++- |.|+|
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiG-GGSa~ 140 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIG-GGSAH 140 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEc-Ccchh
Confidence 4555542 34556677899999999999988221112 226667777777899999999 77765
No 326
>PRK01002 nickel responsive regulator; Provisional
Probab=21.60 E-value=6.1e+02 Score=22.99 Aligned_cols=68 Identities=26% Similarity=0.335 Sum_probs=51.0
Q ss_pred EEEEEeCch--hHHHHHHHHHhccCcceeeEE-eeecCCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEe
Q 015044 81 ISVFVRDES--GVVDLIDEVFARRGYNIESLA-VSGNKDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVED 149 (414)
Q Consensus 81 LSVlVeN~p--GVLsRItgLFsRRGyNIeSLt-Vg~Ted~~iiTIVV~gde~~veQl~kQL~KLidVikV~d 149 (414)
|++ +.|+- ++-.+++.+.....=.|-|-+ +--.++.-+..++|.|+-+.+..+.++|..+=.|..+..
T Consensus 60 Iti-vydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhld~~~ClEvivv~G~~~~I~~l~~kL~~lkGV~~~kl 130 (141)
T PRK01002 60 ISV-IYDHHSTGVMEKLTDIQHDYSDLIVASLHIHLDHDHCLEVIVVRGDAKEIRELTEKLMALKGVKHVKL 130 (141)
T ss_pred EEE-EEeccchhHHHHHHHHHHhccCeEEEeeeeecCCCcEEEEEEEEcCHHHHHHHHHHHhCcCCeeEEEE
Confidence 666 66654 788999999987766555544 444333346788999999999999999999888887764
No 327
>PRK14440 acylphosphatase; Provisional
Probab=21.43 E-value=1.2e+02 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
.+.|.+.|.+.|+++.++++++.|.+--.-.+|+.+
T Consensus 38 ~~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i 73 (90)
T PRK14440 38 LPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKV 73 (90)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEE
Confidence 344568899999999999999998765444444443
No 328
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=21.43 E-value=3.1e+02 Score=25.81 Aligned_cols=59 Identities=14% Similarity=-0.002 Sum_probs=41.6
Q ss_pred EecccCcCCHHHHHHHHHHHHHcCCceeeEeec-C-chHHHHHHHHhCCCeEEEEEeCCCCCCCC
Q 015044 283 IIVLQHPSDYNVMQDAIAILCENDNICCQVMKS-Y-TKKQLITKLSRSGRKVIIATDHGVGAFLD 345 (414)
Q Consensus 283 ~IimGS~SD~~v~~~a~~~L~~~gi~~~~V~Sa-H-~p~~~~~~~~~~g~~ViIavA~G~sa~Lp 345 (414)
+|+.|.-.|-.+-.-.-.+++++|+..- .-. | .+.++++.+-+.|++++|+.. .+.+|+
T Consensus 91 ~vv~G~i~sd~~~~~~e~~~~~~gl~~~--~PLW~~~~~~ll~e~~~~g~~~~iv~v--~~~~L~ 151 (194)
T cd01994 91 AVVFGAILSEYQRTRVERVCERLGLEPL--APLWGRDQEELLREMIEAGFKAIIIKV--AAEGLD 151 (194)
T ss_pred EEEECccccHHHHHHHHHHHHHcCCEEE--ecccCCCHHHHHHHHHHcCCeEEEEEe--ccCCCC
Confidence 5678887777788888889999999743 112 3 448899999999998655443 133455
No 329
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=21.25 E-value=3e+02 Score=27.67 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCCeEEecccCcCCH-HHHHHHHHHHHHcCCceeeEeecC-chHHHHHHHHhCCCeEEEEEe
Q 015044 278 PRTDVIIVLQHPSDY-NVMQDAIAILCENDNICCQVMKSY-TKKQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 278 ~~~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~~~V~SaH-~p~~~~~~~~~~g~~ViIavA 337 (414)
.|++|.|.+-+.+-+ ...-+....|=..||..|.+..+. +++++.+..+..|+.-+|-+-
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViik 65 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIK 65 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEe
Confidence 367999999988888 777888888888999999544444 789999999999985554444
No 330
>PF13941 MutL: MutL protein
Probab=20.91 E-value=2.9e+02 Score=29.99 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCCceeecCCCcccccccCcCcccCCCCCeEEecccCcC--CHHHHHHHHHHHHHcCCcee-eEeecC-chHHHHHHHH
Q 015044 251 VERGPVYCAGSVPLLEAADSSIERVTDPRTDVIIVLQHPS--DYNVMQDAIAILCENDNICC-QVMKSY-TKKQLITKLS 326 (414)
Q Consensus 251 ~~~gdvy~v~~~~~~~~~~~~~~~~~D~~~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~~-~V~SaH-~p~~~~~~~~ 326 (414)
++|+-|.-+-.+.+ .++.++.+..-++++.++.|++- |.++.-+-++.|.+.++.+- -+++=. .-.+..+.++
T Consensus 99 gAGA~V~~v~s~~l---~~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyAGN~~a~~~v~~il~ 175 (457)
T PF13941_consen 99 GAGARVLQVYSYEL---TEEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYAGNKAAQDEVEEILE 175 (457)
T ss_pred cCCcEEEEEeccCC---CHHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEECCHHHHHHHHHHHH
Confidence 56777766666644 45567778888999999999986 57888888899998877655 444433 2266666777
Q ss_pred hCCCeEEEEEeCCCCCCCCcCCccc
Q 015044 327 RSGRKVIIATDHGVGAFLDKIDLLA 351 (414)
Q Consensus 327 ~~g~~ViIavA~G~sa~Lp~~gvvA 351 (414)
+.|.+++|+ +|-+|+++.+.
T Consensus 176 ~~~~~~~~~-----~NV~P~i~~ln 195 (457)
T PF13941_consen 176 KAGKEVVIT-----ENVMPKIDVLN 195 (457)
T ss_pred hCCCCEEEe-----CCCCCCCCCcC
Confidence 778888887 67888776663
No 331
>PRK15456 universal stress protein UspG; Provisional
Probab=20.70 E-value=2.1e+02 Score=24.35 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=19.5
Q ss_pred ch-HHHHHHHHhCCCeEEEEEeCCCC
Q 015044 317 TK-KQLITKLSRSGRKVIIATDHGVG 341 (414)
Q Consensus 317 ~p-~~~~~~~~~~g~~ViIavA~G~s 341 (414)
.| ..+.+..++.+++.||.+.||++
T Consensus 92 ~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 92 SVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 56 55776677788999999998863
No 332
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.62 E-value=34 Score=31.25 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=48.7
Q ss_pred HHHcCCcee-eEeecC--chHHHHHHH-HhCCCeEEEEEeCCCCCCCCcCCccccCccEEEecCcCCCCCCcceee-ccC
Q 015044 302 LCENDNICC-QVMKSY--TKKQLITKL-SRSGRKVIIATDHGVGAFLDKIDLLASGSPVIGVPVRASGVTGFPHQF-VEM 376 (414)
Q Consensus 302 L~~~gi~~~-~V~SaH--~p~~~~~~~-~~~g~~ViIavA~G~sa~Lp~~gvvAg~T~VIgVP~~~~~l~G~daLl-vqM 376 (414)
.++++-.++ .|..+. ...+..+++ ...|++|||+-= |.+..|- --+ ..+||-+|++. .|.|. ++.
T Consensus 3 ~~e~~~~~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr--~~~--~iPVV~I~~s~-----~Dil~al~~ 72 (176)
T PF06506_consen 3 AKEYEDEAEIDVIEASLEEAVEEARQLLESEGADVIISRG-GTAELLR--KHV--SIPVVEIPISG-----FDILRALAK 72 (176)
T ss_dssp HCCCTTTSEEEEEE--HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHH--CC---SS-EEEE---H-----HHHHHHHHH
T ss_pred hhhhCCCceEEEEEecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHH--HhC--CCCEEEECCCH-----hHHHHHHHH
Confidence 345554444 454444 446777777 778999999965 5554444 111 12388888865 45444 222
Q ss_pred CCCC--eEEEEecCCcchHHHHHHHHHhc
Q 015044 377 CPKH--AILLVPVNDAKGAARQAMIICDM 403 (414)
Q Consensus 377 P~Gv--pVatV~Id~~~nAA~~A~~IL~~ 403 (414)
.... .+|+|+-.+-..-.-...++|++
T Consensus 73 a~~~~~~Iavv~~~~~~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 73 AKKYGPKIAVVGYPNIIPGLESIEELLGV 101 (176)
T ss_dssp CCCCTSEEEEEEESS-SCCHHHHHHHHT-
T ss_pred HHhcCCcEEEEecccccHHHHHHHHHhCC
Confidence 2221 48999887776656666667765
No 333
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.45 E-value=4e+02 Score=24.45 Aligned_cols=56 Identities=11% Similarity=-0.088 Sum_probs=33.7
Q ss_pred EEecccCcCC---HHHHHHHHHHHHHcCCceeeEeecCch---HHHHHHHHhCCCeEEEEEe
Q 015044 282 VIIVLQHPSD---YNVMQDAIAILCENDNICCQVMKSYTK---KQLITKLSRSGRKVIIATD 337 (414)
Q Consensus 282 V~IimGS~SD---~~v~~~a~~~L~~~gi~~~~V~SaH~p---~~~~~~~~~~g~~ViIavA 337 (414)
|+++..+.+| ....+.+.+.++++|+.+..+.+.+.+ .+.++.+-..+++.||...
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~ 63 (273)
T cd06305 2 IAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQH 63 (273)
T ss_pred eEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5666665555 234455666777888766644444444 4455555556778887766
No 334
>PRK14442 acylphosphatase; Provisional
Probab=20.36 E-value=1.4e+02 Score=25.08 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEec
Q 015044 115 KDKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDF 150 (414)
Q Consensus 115 ed~~iiTIVV~gde~~veQl~kQL~KLidVikV~dl 150 (414)
.+.|-+.|.+.|+++.++++++.|.+--.--+|+.+
T Consensus 39 ~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v 74 (91)
T PRK14442 39 LDDGRVEVVWEGEEDRAKALERWLGRGPRHAEVSAV 74 (91)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEE
Confidence 344568999999999999999999876454444443
No 335
>PRK14436 acylphosphatase; Provisional
Probab=20.12 E-value=1.5e+02 Score=24.89 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCcEEEEEEeCchhHHHHHHHHHhcCccEEEEEecC
Q 015044 116 DKGLFTIVVSGTDRVLQQVIEQLQKLVNVLKVEDFS 151 (414)
Q Consensus 116 d~~iiTIVV~gde~~veQl~kQL~KLidVikV~dlt 151 (414)
..|.+.|.+.|+++.++++++-|.+--.-.+|+.++
T Consensus 40 ~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14436 40 PDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_pred CCCcEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 446689999999999999999997755555555544
No 336
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=20.02 E-value=3.2e+02 Score=22.21 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=47.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccC--cceeeEEeeecCCCcE--EEEEEe-CchhHHHHHHHHHhcCccEEEE
Q 015044 81 ISVFVRDESGVVDLIDEVFARRG--YNIESLAVSGNKDKGL--FTIVVS-GTDRVLQQVIEQLQKLVNVLKV 147 (414)
Q Consensus 81 LSVlVeN~pGVLsRItgLFsRRG--yNIeSLtVg~Ted~~i--iTIVV~-gde~~veQl~kQL~KLidVikV 147 (414)
+.+...|..+..+.|..+|.+.- ++-..+....+....+ +|+.+. .+++.++.+-+.|.+.-.|.=|
T Consensus 13 ~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 13 FKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp EEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 89999999999999999999964 3445555565555555 455432 4677899999999887777543
Done!