Query 015045
Match_columns 414
No_of_seqs 208 out of 1865
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 39.7 3.2E+02 0.011 27.8 13.3 16 188-203 419-434 (530)
2 2xq2_A Sodium/glucose cotransp 12.7 1.1E+03 0.037 24.1 17.6 19 105-123 366-384 (593)
3 4dx5_A Acriflavine resistance 8.9 1.4E+03 0.047 25.1 10.6 10 278-287 982-991 (1057)
4 1v4e_A Octoprenyl-diphosphate 7.3 1.3E+03 0.045 21.4 9.6 79 63-147 155-233 (299)
5 1q90_M Cytochrome B6F complex 7.2 2.2E+02 0.0076 19.0 1.8 22 323-344 5-26 (39)
6 1vf5_F Protein PET M; photosyn 7.1 5.4E+02 0.018 16.8 3.6 22 324-345 5-26 (35)
7 3mav_A Farnesyl pyrophosphate 6.5 1.6E+03 0.054 21.6 8.8 83 61-145 229-313 (395)
8 2v50_A Multidrug resistance pr 6.5 1.7E+03 0.058 24.4 9.8 8 215-222 919-926 (1052)
9 2ls2_A High affinity copper up 8.9 1.1E+02 0.0037 18.6 0.0 18 172-189 8-25 (26)
10 4ev6_A Magnesium transport pro 5.5 9E+02 0.031 22.7 6.1 20 271-290 283-302 (339)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=39.65 E-value=3.2e+02 Score=27.77 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=11.1
Q ss_pred CCcccchhhhHhhhhc
Q 015045 188 LKQIHPVNTWVGAIVG 203 (414)
Q Consensus 188 lKr~t~~nv~vG~~~G 203 (414)
.||.+....+.|.+.|
T Consensus 419 wkr~~~~gA~~g~i~G 434 (530)
T 3dh4_A 419 WKKTTSKGAIIGVVAS 434 (530)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHH
Confidence 6787766666777666
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=12.72 E-value=1.1e+03 Score=24.11 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhccccc
Q 015045 105 TGTMMVAASANSLNQLFEI 123 (414)
Q Consensus 105 lg~~l~~aa~~~iND~~D~ 123 (414)
+...+...++...||++.+
T Consensus 366 ~~s~l~a~st~~~~Diy~~ 384 (593)
T 2xq2_A 366 LASMLNSTATIFTMDIYKE 384 (593)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556677788998753
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=8.92 E-value=1.4e+03 Score=25.08 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 015045 278 VPLGYLAYDW 287 (414)
Q Consensus 278 v~ls~l~~~~ 287 (414)
..+++++..+
T Consensus 982 t~~g~~pl~~ 991 (1057)
T 4dx5_A 982 FILGVMPLVI 991 (1057)
T ss_dssp HHHHTHHHHT
T ss_pred HHHHHHHHHH
Confidence 3345555444
No 4
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=7.34 E-value=1.3e+03 Score=21.39 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=49.7
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 015045 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
....|++.++-++..+...++-+|.+++.... .. +.-+|.- +-.+-.+.+|+.|..-|....++...=+-.|+.
T Consensus 155 ~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~--l~~~g~~-lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~ 228 (299)
T 1v4e_A 155 TKEEYLRIVEGKSGALFGLALQLPALLEGELG---ED--LYNLGVT-IGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVA 228 (299)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HH--HHHHHHH-HHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTC
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HH--HHHHHHH-HHHHHHHHHHHHHccCccccCCCcchHhhCCCc
Confidence 35778999999988888888888988875432 11 1222222 223567899999987772222222334677888
Q ss_pred CHHHH
Q 015045 143 SVRHA 147 (414)
Q Consensus 143 S~~~A 147 (414)
|..-.
T Consensus 229 T~p~l 233 (299)
T 1v4e_A 229 SFPLV 233 (299)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 86543
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=7.17 E-value=2.2e+02 Score=19.05 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=12.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q 015045 323 KMFHASLLYLPVFMSGLLFHRL 344 (414)
Q Consensus 323 ~~F~~s~~~l~~~l~~~li~~~ 344 (414)
..|..+...-.+++.++.++.+
T Consensus 5 EIf~~A~i~~~L~LvGla~Gf~ 26 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGLAIGFV 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555655555543
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=7.14 E-value=5.4e+02 Score=16.75 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHhh
Q 015045 324 MFHASLLYLPVFMSGLLFHRLT 345 (414)
Q Consensus 324 ~F~~s~~~l~~~l~~~li~~~~ 345 (414)
.|......-.+++.++.++.++
T Consensus 5 If~~A~i~~~LvLvGla~Gf~L 26 (35)
T 1vf5_F 5 MLYAALLSFGLIFVGWGLGVLL 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555556565555433
No 7
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=6.53 E-value=1.6e+03 Score=21.63 Aligned_cols=83 Identities=6% Similarity=0.021 Sum_probs=45.5
Q ss_pred HHhHHHHHhHhhhhHHHH-HHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 015045 61 RHYGRCYWELSKARLSML-VVATSGTGFALGSGSTID-LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~-~~~~~~~G~llA~~~~~~-~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp 138 (414)
......|+++++-++..+ ...++.+|.+++.....+ .... +--+|.- +-.+=.+.+|+.|.--|...--+..-=|-
T Consensus 229 ~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~-l~~~g~~-lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~ 306 (395)
T 3mav_A 229 MINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKK-IEDISML-MGEYFQIHDDYLDIFGDSTKTGKVGSDIQ 306 (395)
T ss_dssp GCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHH-HHHHHHH-HHHHHHHHHHHHHHC--------CCCTTT
T ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHHH-HHHHHHHHHHHHHhcCCHhhhcccccHHh
Confidence 345688999999998876 567778888887532211 1111 1122222 22355789999998666543211234456
Q ss_pred CCCCCHH
Q 015045 139 SGRISVR 145 (414)
Q Consensus 139 sG~IS~~ 145 (414)
.|+.|..
T Consensus 307 egK~T~p 313 (395)
T 3mav_A 307 NNKLTWP 313 (395)
T ss_dssp TTCCCHH
T ss_pred cCCchHH
Confidence 6777753
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=6.47 E-value=1.7e+03 Score=24.38 Aligned_cols=8 Identities=0% Similarity=-0.666 Sum_probs=3.8
Q ss_pred cCCCChHH
Q 015045 215 VGHVSLNG 222 (414)
Q Consensus 215 ~g~~~~~~ 222 (414)
+..++...
T Consensus 919 g~~l~~~~ 926 (1052)
T 2v50_A 919 GLSNDVFF 926 (1052)
T ss_dssp TCCBSHHH
T ss_pred CCCccHHH
Confidence 33456544
No 9
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.87 E-value=1.1e+02 Score=18.61 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 015045 172 GLAASNLILYAFVYTPLK 189 (414)
Q Consensus 172 ~l~l~~l~ly~~iYt~lK 189 (414)
+++.+++++.+..|..+|
T Consensus 8 v~Sci~ifll~~~YE~Lk 25 (26)
T 2ls2_A 8 AGAFVAVFLLAMFYEGLK 25 (26)
Confidence 444455555456676665
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.50 E-value=9e+02 Score=22.66 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhch
Q 015045 271 LRNCLYLVPLGYLAYDWGVT 290 (414)
Q Consensus 271 ~~~~l~lv~ls~l~~~~gl~ 290 (414)
...+..++|.+++.-.+||+
T Consensus 283 Tiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhccCc
Confidence 44445566777777677763
Done!