BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015046
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 LTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSHIYP 123
L++ ++ NVFG L+ + Q +A L TLT TAQT Y+ +P
Sbjct: 133 LSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLT----TAQTATYNRNFP 179
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 LTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSHIYP 123
L++ ++ NVFG L+ + Q +A L TLT TAQT Y+ +P
Sbjct: 134 LSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLT----TAQTATYNRNFP 180
>pdb|1NO7|A Chain A, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
pdb|1NO7|B Chain B, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
Length = 604
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 322 YMGGRLPQICLNIRR---GHVEGLNPLMFVFALVG 353
Y+GG LP+ C+ + R HVE L L+ F L G
Sbjct: 227 YLGGDLPEECMAVYRDLVAHVEALAQLVDDFTLTG 261
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 73 LTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSHIYP 123
L++ ++ NVFG L + Q +A L TLT TAQ Y+ YP
Sbjct: 134 LSSTVIAAFVNVFGILTSSSNNTNQDALAALKTLT----TAQAATYNQNYP 180
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 73 LTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSHIYP 123
L++ ++ NVFG L + Q +A L TLT TAQ Y+ YP
Sbjct: 134 LSSTVIAAFVNVFGILTSSSNNTNQDALAALKTLT----TAQAATYNQNYP 180
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 LTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSHIYP 123
L++ ++ NVFG L+ + Q +A L TLT TAQT Y+ +P
Sbjct: 134 LSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLT----TAQTATYNRNFP 180
>pdb|6NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|1A14|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 5 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|A Chain A, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1F8B|A Chain A, Native Influenza Virus Neuraminidase In Complex With
Neu5ac2en
pdb|1F8C|A Chain A, Native Influenza Neuraminidase In Complex With
4-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8D|A Chain A, Native Influenza Neuraminidase In Complex With
9-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8E|A Chain A, Native Influenza Neuraminidase In Complex With
4,9-diamino-2-deoxy-2, 3-dehydro-n-acetyl-neuraminic
Acid
pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Neuraminidase In
Complex With Bcx-1812
pdb|2C4A|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 3 Hours
At 291 K.
pdb|2C4L|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 24 Hours
At 291 K And Finally Backsoaked For 30 Min In A
Cryoprotectant Solution Which Did Not Contain Neu5ac
pdb|1BJI|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With The Glaxo
6-Carboxamide Sialic Acid Analogue Gr217029
pdb|1MWE|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With Sialic Acid At 4
Degrees C Revealing A Second Sialic Acid Binding Site
pdb|2QWI|A Chain A, The X-ray Structure Of A Complex Of
N-acetyl-4-guanidino-6-
Methyl(propyl)carboxamide-4,
5-dihydro-2h-pyran-2-carboxylic Acid And Wildtype Tern
N9 Influenza Virus Neuraminidase
pdb|2QWJ|A Chain A, The X-ray Structure Of A Complex Of 5-n-acetyl-4-amino-6-
Diethylcarboxamide-4,5-dihydro-2h-pyran-2-carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWK|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And Wildtype Tern N9 Influenza Virus Neuraminidase
pdb|7NN9|A Chain A, Native Influenza Virus Neuraminidase Subtype N9 (Tern)
pdb|1NNC|A Chain A, Influenza Virus Neuraminidase Subtype N9 (Tern) Complexed
With 4- Guanidino-Neu5ac2en Inhibitor
Length = 388
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|3NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|1XOE|A Chain A, N9 Tern Influenza Neuraminidase Complexed With
(2r,4r,5r)-5-(1-
Acetylamino-3-Methyl-Butyl-Pyrrolidine-2,
4-Dicarobyxylic Acid 4- Methyl Esterdase Complexed With
pdb|1XOG|A Chain A, N9 Tern Influenza Neuraminidase Complexed With A
2,5-Disubstituted Tetrahydrofuran-5-Carboxylic Acid
pdb|1NNB|A Chain A, Three-Dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-Deoxy
2,3-Dehydro-N-Acetyl Neuraminic Acid
pdb|1NNA|A Chain A, Three-dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-deoxy
2,3-dehydro-n-acetyl Neuraminic Acid
Length = 387
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 274 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 320
>pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
pdb|2QWA|A Chain A, The X-ray Structure Of A Drug Resistant Variant R292k Of
Tern N9 Influenza Virus Neuraminidase
pdb|2QWB|A Chain A, The X-ray Structure Of A Complex Of Sialic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWC|A Chain A, The X-Ray Structure Of A Complex Of Neu5ac2en And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWD|A Chain A, The X-Ray Structure Of A Complex Of 4-Amino-Neu5ac2en And
A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWE|A Chain A, The X-ray Structure Of A Complex Of 4-guanidino-neu5ac2en
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWF|A Chain A, The X-Ray Structure Of A Complex Of
N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWG|A Chain A, The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWH|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
Length = 388
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|1L7G|A Chain A, Crystal Structure Of E119g Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
Length = 388
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|1NCA|N Chain N, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|4DGR|A Chain A, Influenza Subtype 9 Neuraminidase Benzoic Acid Inhibitor
Complex
Length = 389
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 276 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 322
>pdb|1NCB|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLG----LASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG +AS + + +VP +T+ K K T+G +I T W
Sbjct: 276 DGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 322
>pdb|4NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLGL----ASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG AS + + +VP +T+ K K T+G +I T W
Sbjct: 275 DGVNTWLGRTISRASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 321
>pdb|1NCC|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 34 DGVSLGLGL----ASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTW 76
DGV+ LG AS + + +VP +T+ K K T+G +I T W
Sbjct: 276 DGVNTWLGRTISRASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTDW 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,782,905
Number of Sequences: 62578
Number of extensions: 523723
Number of successful extensions: 892
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 19
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)