Query 015046
Match_columns 414
No_of_seqs 250 out of 1320
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2913 Predicted membrane pro 100.0 1.1E-36 2.4E-41 294.1 14.7 248 31-404 3-251 (260)
2 TIGR00951 2A43 Lysosomal Cysti 99.9 8.5E-24 1.8E-28 201.0 20.9 205 35-399 2-220 (220)
3 KOG3145 Cystine transporter Cy 99.8 1.3E-20 2.9E-25 181.3 3.4 220 32-403 119-359 (372)
4 KOG3211 Predicted endoplasmic 99.6 3.2E-15 7E-20 137.9 12.8 89 26-119 23-112 (230)
5 TIGR00951 2A43 Lysosomal Cysti 99.5 9.1E-14 2E-18 132.4 9.4 98 309-406 2-107 (220)
6 PF04193 PQ-loop: PQ loop repe 99.4 3.9E-13 8.5E-18 102.4 6.0 56 36-91 1-56 (61)
7 PF04193 PQ-loop: PQ loop repe 99.3 1.6E-12 3.4E-17 99.0 6.3 57 310-366 1-57 (61)
8 KOG3145 Cystine transporter Cy 99.3 3.7E-13 8E-18 130.2 1.0 101 307-407 120-232 (372)
9 KOG2913 Predicted membrane pro 99.2 4.1E-11 9E-16 116.5 8.8 92 307-405 5-96 (260)
10 smart00679 CTNS Repeated motif 98.9 1.2E-09 2.6E-14 72.7 2.6 32 50-81 1-32 (32)
11 smart00679 CTNS Repeated motif 98.8 2.2E-09 4.8E-14 71.4 2.6 32 324-355 1-32 (32)
12 COG4095 Uncharacterized conser 98.7 7.6E-08 1.6E-12 78.0 7.1 83 311-401 5-87 (89)
13 COG4095 Uncharacterized conser 98.6 3.8E-07 8.2E-12 74.0 9.9 74 36-110 4-77 (89)
14 PF03083 MtN3_slv: Sugar efflu 98.2 1.6E-06 3.5E-11 70.5 4.7 82 314-403 6-87 (87)
15 PF03083 MtN3_slv: Sugar efflu 97.7 5.1E-05 1.1E-09 61.7 4.9 79 39-119 5-83 (87)
16 PHA02246 hypothetical protein 97.3 0.0018 3.9E-08 58.1 9.1 83 33-119 108-190 (192)
17 KOG3211 Predicted endoplasmic 97.2 0.0012 2.5E-08 62.0 8.0 73 47-120 152-224 (230)
18 KOG1623 Multitransmembrane pro 97.1 0.0069 1.5E-07 58.6 11.8 81 38-119 10-90 (243)
19 PHA02246 hypothetical protein 97.0 0.016 3.4E-07 52.2 12.9 64 35-99 3-66 (192)
20 KOG1623 Multitransmembrane pro 95.0 0.043 9.3E-07 53.2 5.7 83 314-403 12-94 (243)
21 PF00810 ER_lumen_recept: ER l 85.0 2.7 5.9E-05 37.8 6.4 55 32-86 88-142 (147)
22 KOG3106 ER lumen protein retai 55.5 58 0.0013 30.8 7.6 54 31-84 110-163 (212)
23 KOG2489 Transmembrane protein 50.4 24 0.00053 37.8 4.8 87 32-123 461-550 (592)
24 COG5196 ERD2 ER lumen protein 50.2 63 0.0014 30.0 6.8 59 31-89 111-169 (214)
25 PLN02841 GPI mannosyltransfera 41.8 85 0.0019 33.3 7.3 73 43-117 339-416 (440)
26 PRK11056 hypothetical protein; 40.8 78 0.0017 27.6 5.6 31 329-359 50-81 (120)
27 PF05007 Mannosyl_trans: Manno 40.6 92 0.002 30.7 6.9 70 45-116 185-259 (259)
28 PF07578 LAB_N: Lipid A Biosyn 37.0 2.1E+02 0.0046 22.8 7.1 57 40-99 1-57 (72)
29 KOG2489 Transmembrane protein 32.8 46 0.00099 35.8 3.6 24 326-349 484-507 (592)
30 KOG3893 Mannosyltransferase [C 31.5 1.3E+02 0.0028 30.9 6.4 71 44-116 328-402 (405)
31 PF00810 ER_lumen_recept: ER l 28.5 1.2E+02 0.0027 27.2 5.2 51 309-359 91-141 (147)
32 PF04148 Erv26: Transmembrane 28.4 1.9E+02 0.0041 27.8 6.6 57 339-399 62-118 (211)
33 PRK02507 proton extrusion prot 28.4 3.6E+02 0.0077 28.6 9.2 103 17-121 285-406 (422)
34 KOG1638 Steroid reductase [Lip 27.3 62 0.0013 31.6 3.2 13 7-29 190-202 (257)
35 CHL00043 cemA envelope membran 25.3 5.7E+02 0.012 25.3 9.5 104 16-121 123-245 (261)
36 COG5196 ERD2 ER lumen protein 24.9 5.2E+02 0.011 24.2 8.5 84 310-393 116-200 (214)
37 PF07226 DUF1422: Protein of u 23.8 2.2E+02 0.0048 24.7 5.6 52 329-390 50-102 (117)
38 PF04971 Lysis_S: Lysis protei 22.8 86 0.0019 24.7 2.7 37 305-341 31-67 (68)
39 KOG0828 Predicted E3 ubiquitin 21.3 5.3E+02 0.011 28.0 8.8 105 7-114 415-535 (636)
40 PF03040 CemA: CemA family; I 21.2 7.2E+02 0.016 24.1 9.3 104 16-121 92-214 (230)
41 PF02109 DAD: DAD family; Int 20.3 4.4E+02 0.0095 22.8 6.7 54 53-107 8-63 (112)
No 1
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=294.07 Aligned_cols=248 Identities=38% Similarity=0.581 Sum_probs=176.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 015046 31 SVRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVI 110 (414)
Q Consensus 31 ~~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~i 110 (414)
..++.+|.++|.+|.+||+++.+|||++|||+||+||+|+.|++.|++||++|++|+++++ +.|+|++.+.||++.|++
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~-~~~~~~~~~~yy~~~d~~ 81 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP-LGSTLKVQAVYYTLADSV 81 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc-cchhHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999995 788999999999999999
Q ss_pred HHhhhhhcccccc-ccccCCCCCCCCCCCCCccccccCCCCCCCCccccCCCCccccCCCCCCCCCCcCCCCCCCCCCCC
Q 015046 111 LTAQTMYYSHIYP-RLKHNKRPQTGLMPNQPEAAEKTRPSSNGVGEQVNSSGKWKIDSDTSDTENFSIPIPLPPFPRNGS 189 (414)
Q Consensus 111 l~~Q~~yY~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 189 (414)
++.|++||+..++ +.. .+ +++. + ...+.....
T Consensus 82 l~~q~~yy~~~~~~~pl------------l~------~~s~--------------~-----s~~~~~~~~---------- 114 (260)
T KOG2913|consen 82 LFVQCLYYGNIYPREPL------------LP------VPSF--------------R-----SLLGGLEAL---------- 114 (260)
T ss_pred HHHHHHhcchhcccCcc------------cc------ccch--------------h-----hhhcchHHH----------
Confidence 9999999987555 100 00 0000 0 000000000
Q ss_pred CCccccccccccccCCCCCCCCccccccCCCCCCCCccccccccCCCCCCCCCCCCccchhhhhhHHHHHhhhhcccccc
Q 015046 190 PGRELYYTSARSLSSSHTPTAGSFIAQRMSPSHHSRISIEEPLLGGHISTQSPPSTNTKTMLCLVPIMIFLTTFNFHYSN 269 (414)
Q Consensus 190 ~~~~~~~~sars~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 269 (414)
...+..... + +.. . ...........+....+. ....
T Consensus 115 -----~~~~~~~~~----~--------~~~---------------------~---~~~~~~g~~~~~~~~~~~--~~~~- 150 (260)
T KOG2913|consen 115 -----LILSIKLFS----P--------RFV---------------------K---WPVVALGFLAIVFLICGA--AYES- 150 (260)
T ss_pred -----HHHHhhccC----c--------chh---------------------h---ccchhhhhHHHHHHHHHH--Hhhc-
Confidence 000000000 0 000 0 000000001111111111 0000
Q ss_pred CcccccccCCCCCcchhhhcccccccCCCccccCCCCcchhHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHH
Q 015046 270 TEHDTVFEKPNKGFVIQVRRKLLQVSGGLLQESVTGGSSGIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVF 349 (414)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~~~~~~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~ 349 (414)
. .+. ........+..|.++||+++++|.++|+|||++||+||+|+|+++.+|++
T Consensus 151 --~---------------~~~---------~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~ 204 (260)
T KOG2913|consen 151 --L---------------LRA---------VRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAF 204 (260)
T ss_pred --c---------------ccc---------cccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHH
Confidence 0 000 00000336779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHHHHHHhheecCCCCc
Q 015046 350 ALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSFILIQFIYYRYRSFQ 404 (414)
Q Consensus 350 ~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~iil~Q~~~Y~~~~~~ 404 (414)
+++||.+|..| +++..|+||+.++.++..+|++++.|+++|++.+.+
T Consensus 205 ~~~~n~~y~~s--------~~~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~~~~~ 251 (260)
T KOG2913|consen 205 NSLGNTTYILS--------SYLVTNLPWLVDSKGTIYLDIFIFLQFFNYRASKAQ 251 (260)
T ss_pred HHccccccccc--------cccccCCcccccCCcchhHHHHHHHHHHHhhccccc
Confidence 99999999986 567789999999999999999999999999988844
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.92 E-value=8.5e-24 Score=200.99 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhc------CCCchHH--------HHH
Q 015046 35 GVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLE------PATLPTQ--------YYM 100 (414)
Q Consensus 35 ~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~------~~~lp~q--------~~~ 100 (414)
.+|+++|++++++|+++++||++||||+||++|+|+.|+++|++|.++.+++.+.. .++.|+. ++.
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFF 81 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHH
Confidence 47999999999999999999999999999999999999999999999999985321 1234443 444
Q ss_pred HHHHHHHHHHHHhhhhhccccccccccCCCCCCCCCCCCCccccccCCCCCCCCccccCCCCccccCCCCCCCCCCcCCC
Q 015046 101 AMLYTLTTVILTAQTMYYSHIYPRLKHNKRPQTGLMPNQPEAAEKTRPSSNGVGEQVNSSGKWKIDSDTSDTENFSIPIP 180 (414)
Q Consensus 101 a~~~~~~d~il~~Q~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 180 (414)
++..++++++++.|+.+|+...+ +. .+ +
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~-----~~---------------------------------s~------------~-- 109 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQ-----RV---------------------------------SN------------P-- 109 (220)
T ss_pred HHHHHHHHHHHHHHHhhcccccc-----cc---------------------------------ch------------h--
Confidence 55667788888899887752110 00 00 0
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCccccccCCCCCCCCccccccccCCCCCCCCCCCCccchhhhhhHHHHHh
Q 015046 181 LPPFPRNGSPGRELYYTSARSLSSSHTPTAGSFIAQRMSPSHHSRISIEEPLLGGHISTQSPPSTNTKTMLCLVPIMIFL 260 (414)
Q Consensus 181 ~~~~~~~~~~~~~~~~~sars~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
. .. .........+.
T Consensus 110 ------------~-----------------------------------------------------~~-~~~~~~~~~~~ 123 (220)
T TIGR00951 110 ------------W-----------------------------------------------------IL-RILVALLACFA 123 (220)
T ss_pred ------------H-----------------------------------------------------HH-HHHHHHHHHHH
Confidence 0 00 00000000000
Q ss_pred hhhccccccCcccccccCCCCCcchhhhcccccccCCCccccCCCCcchhHHHHHHHHHHHHhhcchhhhhhHHhcCccC
Q 015046 261 TTFNFHYSNTEHDTVFEKPNKGFVIQVRRKLLQVSGGLLQESVTGGSSGIGSYLGWAMAAIYMGGRLPQICLNIRRGHVE 340 (414)
Q Consensus 261 g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~~~~~~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~ 340 (414)
........ . ......-..++++...+.+++++||++.|||||||+
T Consensus 124 ~~~~~~~~---~--------------------------------~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~ 168 (220)
T TIGR00951 124 TLLVALLS---P--------------------------------ITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTG 168 (220)
T ss_pred HHHHHHHh---c--------------------------------CChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCC
Confidence 00000000 0 001224456888999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHHHHHHhheec
Q 015046 341 GLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSFILIQFIYYR 399 (414)
Q Consensus 341 GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~iil~Q~~~Y~ 399 (414)
|+|+...+++++|.+-..+..+... .+...+.....++++|.+++.|+++|+
T Consensus 169 glSi~~i~Ld~~G~lqri~ts~~~~-------gd~~~l~~~~~s~~~n~i~~~Q~~~y~ 220 (220)
T TIGR00951 169 QLSIITVFLDFTGLLQRIFQSVNET-------GDPLKAGLFVVSSLFNGLFAAQVFFYW 220 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999655444333221 566788889999999999999999996
No 3
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.80 E-value=1.3e-20 Score=181.30 Aligned_cols=220 Identities=20% Similarity=0.259 Sum_probs=157.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHh-------cCC--------Cch-
Q 015046 32 VRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLL-------EPA--------TLP- 95 (414)
Q Consensus 32 ~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l-------~~~--------~lp- 95 (414)
....+.+++||+-.+.|.++..||||.|||+||+.||+.-|+.+.+.|-..+.++.++ +++ -.|
T Consensus 119 ~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv 198 (372)
T KOG3145|consen 119 ALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPV 198 (372)
T ss_pred hHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCcc
Confidence 4677889999999999999999999999999999999999999999999988776553 110 112
Q ss_pred --HHHHHHHHHHHHHHHHHhhhhhccccccccccCCCCCCCCCCCCCccccccCCCCCCCCccccCCCCccccCCCCCCC
Q 015046 96 --TQYYMAMLYTLTTVILTAQTMYYSHIYPRLKHNKRPQTGLMPNQPEAAEKTRPSSNGVGEQVNSSGKWKIDSDTSDTE 173 (414)
Q Consensus 96 --~q~~~a~~~~~~d~il~~Q~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (414)
.-++.++.-+++.++++.|++.|.+..+|. + +
T Consensus 199 ~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~v-----------------------s------------~----------- 232 (372)
T KOG3145|consen 199 TLNDVVFSLHAVLMTVITILQCFFYERGWQRV-----------------------S------------K----------- 232 (372)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhhccccc-----------------------c------------h-----------
Confidence 124556667889999999999997422110 0 0
Q ss_pred CCCcCCCCCCCCCCCCCCccccccccccccCCCCCCCCccccccCCCCCCCCccccccccCCCCCCCCCCCCccchhhhh
Q 015046 174 NFSIPIPLPPFPRNGSPGRELYYTSARSLSSSHTPTAGSFIAQRMSPSHHSRISIEEPLLGGHISTQSPPSTNTKTMLCL 253 (414)
Q Consensus 174 ~~~~~i~~~~~~~~~~~~~~~~~~sars~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (414)
+| . + ..+
T Consensus 233 ----~i---------------------------------a-------------------l-----------------gil 239 (372)
T KOG3145|consen 233 ----GI---------------------------------A-------------------L-----------------GIL 239 (372)
T ss_pred ----hH---------------------------------H-------------------H-----------------HHH
Confidence 00 0 0 000
Q ss_pred hHHHHHhhhhccccccCcccccccCCCCCcchhhhcccccccCCCccccCCCCcchhHHHHHHHHHHHHhhcchhhhhhH
Q 015046 254 VPIMIFLTTFNFHYSNTEHDTVFEKPNKGFVIQVRRKLLQVSGGLLQESVTGGSSGIGSYLGWAMAAIYMGGRLPQICLN 333 (414)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~~~~~~~g~ilG~is~~l~~~sriPQI~~N 333 (414)
.+..+..+..+... . +.++ + +-..-..+.++...+.++.++||.+.|
T Consensus 240 -~i~~~f~~~~~~va---~---------~~~~----~----------------wL~f~~~~syiKl~mTliKYiPQa~mN 286 (372)
T KOG3145|consen 240 -AIFWLFAVVFMYVA---Y---------WYVI----R----------------WLAFLNNLSYIKLAMTLIKYIPQAYMN 286 (372)
T ss_pred -HHHHHHHHHHHHHh---h---------HHHH----H----------------HHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 00001111000000 0 0000 0 111234577888889999999999999
Q ss_pred HhcCccCccCHHHHHHHHHHHHHHHHHHhhcc---cCccccccchhhHHHhHHHHHHHHHHHHHhheecCCCC
Q 015046 334 IRRGHVEGLNPLMFVFALVGNATYVASILVNS---VDWSRIRPNLPWLADAGGCVLLDSFILIQFIYYRYRSF 403 (414)
Q Consensus 334 yrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~---~~~~~l~~~lp~l~~s~~~~~lD~iil~Q~~~Y~~~~~ 403 (414)
|+||||+|+|+.-+++++.|+++..++.++++ .+|+-+..+.-...-++.++++|++.++|++.|+++++
T Consensus 287 ~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~ 359 (372)
T KOG3145|consen 287 FTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGH 359 (372)
T ss_pred ceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEecccc
Confidence 99999999999999999999999999998864 46776777877777789999999999999987665443
No 4
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=99.63 E-value=3.2e-15 Score=137.89 Aligned_cols=89 Identities=27% Similarity=0.306 Sum_probs=83.2
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHH
Q 015046 26 EYCLCSVRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYT 105 (414)
Q Consensus 26 ~~C~~~~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~ 105 (414)
.+|. ...+|+.+|+......+..++|||.|.-.+||++|||..-+.++++|.+..+.|++-.| +|+..|++..|+
T Consensus 23 ~~cl---~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g--~pFss~gE~~fL 97 (230)
T KOG3211|consen 23 KDCL---KALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSG--YPFSSYGEYPFL 97 (230)
T ss_pred ccch---HHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcC--CCchhHHHHHHH
Confidence 3688 89999999999999999999999999999999999999999999999999999999985 899999987776
Q ss_pred HH-HHHHHhhhhhcc
Q 015046 106 LT-TVILTAQTMYYS 119 (414)
Q Consensus 106 ~~-d~il~~Q~~yY~ 119 (414)
++ +++++.++++|+
T Consensus 98 l~Q~vili~~if~f~ 112 (230)
T KOG3211|consen 98 LLQAVILILCIFHFS 112 (230)
T ss_pred HHHHHHHHHHHHHhc
Confidence 66 999999999997
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.49 E-value=9.1e-14 Score=132.37 Aligned_cols=98 Identities=23% Similarity=0.195 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhc----ccCcccccc----chhhHHH
Q 015046 309 GIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVN----SVDWSRIRP----NLPWLAD 380 (414)
Q Consensus 309 ~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~----~~~~~~l~~----~lp~l~~ 380 (414)
.+++++||+++++|+.+++||++|||||||++|+|+.|++++++|+++|.++.+.. ..+.++... +..+++.
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFF 81 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHH
Confidence 36789999999999999999999999999999999999999999999999875443 112223222 3358999
Q ss_pred hHHHHHHHHHHHHHhheecCCCCccc
Q 015046 381 AGGCVLLDSFILIQFIYYRYRSFQED 406 (414)
Q Consensus 381 s~~~~~lD~iil~Q~~~Y~~~~~~~~ 406 (414)
++++++++++++.|+.+|.+..++..
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~~~s 107 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQRVS 107 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999977655543
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=99.40 E-value=3.9e-13 Score=102.39 Aligned_cols=56 Identities=43% Similarity=0.746 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcC
Q 015046 36 VSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEP 91 (414)
Q Consensus 36 ~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~ 91 (414)
++.++|++++++|+++++|||+||||+||++|+|+.++++++.|+++++++.++.+
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999885
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=99.35 E-value=1.6e-12 Score=99.02 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhccc
Q 015046 310 IGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSV 366 (414)
Q Consensus 310 ~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~ 366 (414)
++.++|+++.++++.+++||++||||+|+++|+|+.+++++++|++++.++.+....
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~ 57 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY 57 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999998877644
No 8
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.31 E-value=3.7e-13 Score=130.25 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=84.8
Q ss_pred cchhHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhc--c--cCccc--------cccc
Q 015046 307 SSGIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVN--S--VDWSR--------IRPN 374 (414)
Q Consensus 307 ~~~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~--~--~~~~~--------l~~~ 374 (414)
..++.+|+||++.+.|.+|++||||.||||||++||++.|..+++.|-..|.+..++. . ...+| ....
T Consensus 120 l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~ 199 (372)
T KOG3145|consen 120 LVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVT 199 (372)
T ss_pred HHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccc
Confidence 5678899999999999999999999999999999999999999999999999876552 1 11111 2223
Q ss_pred hhhHHHhHHHHHHHHHHHHHhheecCCCCcccc
Q 015046 375 LPWLADAGGCVLLDSFILIQFIYYRYRSFQEDK 407 (414)
Q Consensus 375 lp~l~~s~~~~~lD~iil~Q~~~Y~~~~~~~~~ 407 (414)
+.++..+++.+++.++++.|++.|.+..++..+
T Consensus 200 ~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~ 232 (372)
T KOG3145|consen 200 LNDVVFSLHAVLMTVITILQCFFYERGWQRVSK 232 (372)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhcccccch
Confidence 567899999999999999999999998877543
No 9
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.20 E-value=4.1e-11 Score=116.46 Aligned_cols=92 Identities=25% Similarity=0.373 Sum_probs=77.3
Q ss_pred cchhHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHH
Q 015046 307 SSGIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVL 386 (414)
Q Consensus 307 ~~~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~ 386 (414)
.+.++.++|.++.+||.+..+|||++|||+|+++|+|+.|++.|++|+++..++.+....... -++.+...++
T Consensus 5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~~-------~~~~~~yy~~ 77 (260)
T KOG2913|consen 5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGST-------LKVQAVYYTL 77 (260)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccchh-------HHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999998877644321 1233445578
Q ss_pred HHHHHHHHhheecCCCCcc
Q 015046 387 LDSFILIQFIYYRYRSFQE 405 (414)
Q Consensus 387 lD~iil~Q~~~Y~~~~~~~ 405 (414)
.|.+++.|++||+...+++
T Consensus 78 ~d~~l~~q~~yy~~~~~~~ 96 (260)
T KOG2913|consen 78 ADSVLFVQCLYYGNIYPRE 96 (260)
T ss_pred HHHHHHHHHHhcchhcccC
Confidence 8999999999999876633
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.87 E-value=1.2e-09 Score=72.68 Aligned_cols=32 Identities=63% Similarity=1.093 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhH
Q 015046 50 VAEVPQIITNYKEKSTEGLSIAFLTTWILGDL 81 (414)
Q Consensus 50 ~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~ 81 (414)
++++||+++|||+||++|+|+.|+++|+.||+
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 36899999999999999999999999999984
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.82 E-value=2.2e-09 Score=71.36 Aligned_cols=32 Identities=41% Similarity=0.557 Sum_probs=29.9
Q ss_pred hcchhhhhhHHhcCccCccCHHHHHHHHHHHH
Q 015046 324 GGRLPQICLNIRRGHVEGLNPLMFVFALVGNA 355 (414)
Q Consensus 324 ~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~ 355 (414)
++++||+++|||+|+++|+|+.|++++++|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 47899999999999999999999999999974
No 12
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=7.6e-08 Score=77.97 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHH
Q 015046 311 GSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSF 390 (414)
Q Consensus 311 g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~i 390 (414)
-.++||+++.+...+++||.+|-+|.|+++++|+.||..-..|-.+++++ +++..++|-++.+..++.+..+
T Consensus 5 ~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliy--------gILi~~lPii~aN~i~~il~li 76 (89)
T COG4095 5 IEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY--------GILINDLPIIIANIISFILSLI 76 (89)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH--------HHHHccCcchhHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999988873 3445689999999999999999
Q ss_pred HHHHhheecCC
Q 015046 391 ILIQFIYYRYR 401 (414)
Q Consensus 391 il~Q~~~Y~~~ 401 (414)
+++-...|..+
T Consensus 77 Il~~kI~~~~k 87 (89)
T COG4095 77 ILFYKIKYILK 87 (89)
T ss_pred HHHHHHHHHHh
Confidence 99988877654
No 13
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.8e-07 Score=73.96 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 015046 36 VSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVI 110 (414)
Q Consensus 36 ~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~i 110 (414)
.-.+.|++...+-.++.+||.+|.+|.|+++++|+.|+.+-..|-.++++|+++.+ ++|..++..+.+.+--++
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~-~lPii~aN~i~~il~liI 77 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIN-DLPIIIANIISFILSLII 77 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999995 799988777666544333
No 14
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.22 E-value=1.6e-06 Score=70.55 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHHHHH
Q 015046 314 LGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSFILI 393 (414)
Q Consensus 314 lG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~iil~ 393 (414)
+|.+.+++-..+.+||+++.+|+|+++++|+.+++..++++.++...=+. .++.+.++.+...+++.++.++
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l--------~~d~~i~~~N~~g~~~~~~~~~ 77 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL--------INDWPIIVPNVFGLVLSIIYLV 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh--------cCCeeEEeeHHHHHHHHHHHHh
Confidence 55666777788899999999999999999999999999999998873333 3344566777888899999999
Q ss_pred HhheecCCCC
Q 015046 394 QFIYYRYRSF 403 (414)
Q Consensus 394 Q~~~Y~~~~~ 403 (414)
-+++|.++++
T Consensus 78 ~~~~y~~~~~ 87 (87)
T PF03083_consen 78 VYYIYPSKKK 87 (87)
T ss_pred heEEeCCCCC
Confidence 9999987764
No 15
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.71 E-value=5.1e-05 Score=61.65 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhhhhhc
Q 015046 39 GLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYY 118 (414)
Q Consensus 39 ~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~il~~Q~~yY 118 (414)
++|.++.++-.++.+||+++.+|+|+++++|+..++.-+++..+++.|+++.+ +.|.. ..-+..+++.++.+.-|++|
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~-d~~i~-~~N~~g~~~~~~~~~~~~~y 82 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILIN-DWPII-VPNVFGLVLSIIYLVVYYIY 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcC-CeeEE-eeHHHHHHHHHHHHhheEEe
Confidence 45666667778888999999999999999999999999999999999999996 44443 23345566677777777777
Q ss_pred c
Q 015046 119 S 119 (414)
Q Consensus 119 ~ 119 (414)
.
T Consensus 83 ~ 83 (87)
T PF03083_consen 83 P 83 (87)
T ss_pred C
Confidence 5
No 16
>PHA02246 hypothetical protein
Probab=97.26 E-value=0.0018 Score=58.12 Aligned_cols=83 Identities=25% Similarity=0.229 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 015046 33 RDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILT 112 (414)
Q Consensus 33 ~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~il~ 112 (414)
+..+++..|.++++ .+.+|||+.=||+|+.||.++++.++.-.|-.+-.+...+++ ..+..++++..-.++-++..
T Consensus 108 ~~evtQtVat~tIi---LaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth-v~~hIiiTEf~N~iLiLiCy 183 (192)
T PHA02246 108 FTALTQTVATITII---LAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH-TYVHIIATEFVNFVLILICY 183 (192)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC-CcceeeHHHHHHHHHHHHHH
Confidence 34556666666664 688999999999999999999999999999888888878875 45666666766666677777
Q ss_pred hhhhhcc
Q 015046 113 AQTMYYS 119 (414)
Q Consensus 113 ~Q~~yY~ 119 (414)
+|-=||+
T Consensus 184 ~qA~~Ys 190 (192)
T PHA02246 184 LQANYYS 190 (192)
T ss_pred HHHhhhc
Confidence 7877776
No 17
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.24 E-value=0.0012 Score=62.00 Aligned_cols=73 Identities=23% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhhhhhccc
Q 015046 47 SWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMYYSH 120 (414)
Q Consensus 47 ~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~il~~Q~~yY~~ 120 (414)
+...+++|||.+|||+|++.-+|....++-+.|-+..+++.+.++ .-+.....-+...+++.++..|++.|+.
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t-~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQET-GDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhc-CChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 556789999999999999999999999999999999999999985 3455544445667789999999999974
No 18
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=97.08 E-value=0.0069 Score=58.65 Aligned_cols=81 Identities=19% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 015046 38 LGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQTMY 117 (414)
Q Consensus 38 ~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~il~~Q~~y 117 (414)
.++|.+..++-+++.+|-.++.+|+||+||.|..=+++-+++..+++-|+++..+.....++. ..-+++..+-+.-|+|
T Consensus 10 ~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN-~~G~~ie~~Yi~~f~~ 88 (243)
T KOG1623|consen 10 GILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITIN-GIGLVIETVYISIFLY 88 (243)
T ss_pred HHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEe-hhcHHHHHHHHHHHhe
Confidence 344445555556888899999999999999999999999999999999998875223332222 3345555666677888
Q ss_pred cc
Q 015046 118 YS 119 (414)
Q Consensus 118 Y~ 119 (414)
|.
T Consensus 89 ya 90 (243)
T KOG1623|consen 89 YA 90 (243)
T ss_pred ec
Confidence 85
No 19
>PHA02246 hypothetical protein
Probab=97.05 E-value=0.016 Score=52.20 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHH
Q 015046 35 GVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYY 99 (414)
Q Consensus 35 ~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~ 99 (414)
-++-.+...-+..-.+..+||+-.-+|.|+.+|.|-+|-.+-..--.+.+...+.++ .--||+.
T Consensus 3 ~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSfyNlL~T~-~~~fqi~ 66 (192)
T PHA02246 3 NLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISFYNLLLTD-ASVFQIV 66 (192)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEe
Confidence 345566666677778889999999999999999999886666555555555555554 4556654
No 20
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=95.04 E-value=0.043 Score=53.22 Aligned_cols=83 Identities=17% Similarity=0.277 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHHHHH
Q 015046 314 LGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSFILI 393 (414)
Q Consensus 314 lG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~iil~ 393 (414)
+|-+..++-+.+.+|=.++-+||||+||.|..-|++.+++..+|.-.=+.... +++ .+.-+...+++..+.+.
T Consensus 12 ~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~--d~l-----litIN~~G~~ie~~Yi~ 84 (243)
T KOG1623|consen 12 LGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH--DYL-----LITINGIGLVIETVYIS 84 (243)
T ss_pred HHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccC--ceE-----EEEEehhcHHHHHHHHH
Confidence 34444445567889999999999999999999999999999998753323222 222 22234555677777777
Q ss_pred HhheecCCCC
Q 015046 394 QFIYYRYRSF 403 (414)
Q Consensus 394 Q~~~Y~~~~~ 403 (414)
-|++|..+++
T Consensus 85 ~f~~ya~~k~ 94 (243)
T KOG1623|consen 85 IFLYYAPKKK 94 (243)
T ss_pred HHheecCchh
Confidence 7888887766
No 21
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=85.03 E-value=2.7 Score=37.80 Aligned_cols=55 Identities=18% Similarity=0.001 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHH
Q 015046 32 VRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFG 86 (414)
Q Consensus 32 ~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g 86 (414)
....+.+++...|+.+..++.+||++.-.|++.+|.+...+++.--+.=++++++
T Consensus 88 ~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~ 142 (147)
T PF00810_consen 88 NSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLN 142 (147)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999999999887776666666554
No 22
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.51 E-value=58 Score=30.82 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHH
Q 015046 31 SVRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNV 84 (414)
Q Consensus 31 ~~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl 84 (414)
++.-.+.++++..|+-...++-+||+..-=|.|.+|-+..-.++.--+--..++
T Consensus 110 ~~~~t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~ 163 (212)
T KOG3106|consen 110 NHSFTILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYI 163 (212)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Confidence 345558999999999999999999999999999999998877655443333333
No 23
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=50.44 E-value=24 Score=37.78 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 015046 32 VRDGVSLGLGLASVISW---GVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTT 108 (414)
Q Consensus 32 ~~~~~s~~lG~is~~~w---~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d 108 (414)
.+...|-+|-.+--..+ ++..+||+.-|||-||+..|.--++..-.+--..-=+.++.-+ +|+.-=++ |+=|
T Consensus 461 hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIk--MPt~hRl~---CfRD 535 (592)
T KOG2489|consen 461 HKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIK--MPTLHRLA---CFRD 535 (592)
T ss_pred cccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhh---hhcc
Confidence 44555555544444333 3456799999999999999998887665444333333344442 78753332 5556
Q ss_pred HHHHhhhhhcccccc
Q 015046 109 VILTAQTMYYSHIYP 123 (414)
Q Consensus 109 ~il~~Q~~yY~~~~~ 123 (414)
=|+++=|+|=|-+|+
T Consensus 536 DIVFlIYLYQRWlYp 550 (592)
T KOG2489|consen 536 DIVFLIYLYQRWLYP 550 (592)
T ss_pred ceEEEeeehhhhccc
Confidence 555555544444443
No 24
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=50.18 E-value=63 Score=30.03 Aligned_cols=59 Identities=20% Similarity=0.085 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHh
Q 015046 31 SVRDGVSLGLGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLL 89 (414)
Q Consensus 31 ~~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l 89 (414)
.....+|+++...|+-+..++-+||++.--+.+.+|.+..-.++...+=-..++.+-++
T Consensus 111 ~~~~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~ 169 (214)
T COG5196 111 TRGGTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWIL 169 (214)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHH
Confidence 34566999999999999999999999999999999999988776655544555555444
No 25
>PLN02841 GPI mannosyltransferase
Probab=41.78 E-value=85 Score=33.33 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHhhHHHHHHHHhhCC-CCCcCHHHHHHHHHhhHHHHHHHHh---cCCCchHHHHHH-HHHHHHHHHHHhhhhh
Q 015046 43 ASVISWGVAEVPQIITNYKEKS-TEGLSIAFLTTWILGDLFNVFGCLL---EPATLPTQYYMA-MLYTLTTVILTAQTMY 117 (414)
Q Consensus 43 is~~~w~~~~lPQI~~N~r~KS-~eGLS~~fl~~wl~Gd~~nl~g~~l---~~~~lp~q~~~a-~~~~~~d~il~~Q~~y 117 (414)
..-+.|-+..+|=.+.+.+-+. ..| ...+++|+++-..++..+.. .|.+.=.+++.+ +.|.+.++.++.|++-
T Consensus 339 sQYF~Wyl~lLPl~l~~~~~~~~~~~--~~~l~lW~~~Q~~WL~~aY~LEF~G~n~F~~lw~asl~Ff~~n~~il~~~i~ 416 (440)
T PLN02841 339 AQYFVWFFCLLPLILPWSRMKLKWKG--LLCILVWMGSQLHWLMWAYLLEFKGRNVFLQLWIASLLFLAANTFVLLMIIQ 416 (440)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHhHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999987665543 344 67889999999999998875 333223336665 5677889999999873
No 26
>PRK11056 hypothetical protein; Provisional
Probab=40.83 E-value=78 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=23.9
Q ss_pred hhhhHHhcCc-cCccCHHHHHHHHHHHHHHHH
Q 015046 329 QICLNIRRGH-VEGLNPLMFVFALVGNATYVA 359 (414)
Q Consensus 329 QI~~NyrrKS-t~GlS~~~~~~~~~Gn~~y~~ 359 (414)
..+.-|.++. .||+......+-++|-+.|..
T Consensus 50 cLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (120)
T PRK11056 50 CLHQRYLNRPMPEGLPGLAAACFFLGVFLYSA 81 (120)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3455555554 579999999999999999975
No 27
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=40.65 E-value=92 Score=30.74 Aligned_cols=70 Identities=14% Similarity=0.350 Sum_probs=52.3
Q ss_pred HHHHHHhhHHHHHHHHhhCC-CCCcCHHHHHHHHHhhHHHHHHHHh---cCCCchHHHHHH-HHHHHHHHHHHhhhh
Q 015046 45 VISWGVAEVPQIITNYKEKS-TEGLSIAFLTTWILGDLFNVFGCLL---EPATLPTQYYMA-MLYTLTTVILTAQTM 116 (414)
Q Consensus 45 ~~~w~~~~lPQI~~N~r~KS-~eGLS~~fl~~wl~Gd~~nl~g~~l---~~~~lp~q~~~a-~~~~~~d~il~~Q~~ 116 (414)
-++|-+..+|-++.+.+-.+ .+| ...+..|+++-..++..+.. .|.+.=..++.+ +.|.+.++.++.|++
T Consensus 185 YF~Wyl~lLPl~l~~~~l~s~~~~--~~~l~~W~~~Q~~WL~~AY~LEF~G~n~F~~lw~asl~Ff~~N~~iL~~~I 259 (259)
T PF05007_consen 185 YFLWYLCLLPLVLPRSRLLSWRKG--VFLLALWVASQALWLLQAYLLEFLGKNTFLPLWLASLVFFIANVWILGQII 259 (259)
T ss_pred HHHHHHHHHHHHhchhccchHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46899999999999988633 344 46788999999999998875 333333446665 567778999998863
No 28
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=37.00 E-value=2.1e+02 Score=22.76 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhcCCCchHHHH
Q 015046 40 LGLASVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLEPATLPTQYY 99 (414)
Q Consensus 40 lG~is~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~ 99 (414)
+|+++-++...-.+=|-+.-=|+|.. =+...|-.+-++|.++-++|++..+ .|..+.
T Consensus 1 iG~~gq~lF~~Rf~~QW~~SEk~k~s-v~P~~FW~lSl~Gs~lll~Y~i~r~--DpV~il 57 (72)
T PF07578_consen 1 IGFIGQLLFSSRFIVQWIYSEKAKKS-VVPVAFWYLSLIGSLLLLIYAIIRK--DPVFIL 57 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHc--ChHHHH
Confidence 47888888999999999888777754 5788888899999999999999984 364433
No 29
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=32.77 E-value=46 Score=35.80 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred chhhhhhHHhcCccCccCHHHHHH
Q 015046 326 RLPQICLNIRRGHVEGLNPLMFVF 349 (414)
Q Consensus 326 riPQI~~NyrrKSt~GlS~~~~~~ 349 (414)
-+||+.-|||-||+.-|..-+|.-
T Consensus 484 M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 484 MLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred hChHHHhhhhhhhhhcCcHHHHHH
Confidence 579999999999999999988643
No 30
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=31.52 E-value=1.3e+02 Score=30.89 Aligned_cols=71 Identities=17% Similarity=0.336 Sum_probs=52.4
Q ss_pred HHHHHHHhhHHHHHHHHhhCCCCCcCHHHHHHHHHhhHHHHHHHHhc---CCCchHHHHHH-HHHHHHHHHHHhhhh
Q 015046 44 SVISWGVAEVPQIITNYKEKSTEGLSIAFLTTWILGDLFNVFGCLLE---PATLPTQYYMA-MLYTLTTVILTAQTM 116 (414)
Q Consensus 44 s~~~w~~~~lPQI~~N~r~KS~eGLS~~fl~~wl~Gd~~nl~g~~l~---~~~lp~q~~~a-~~~~~~d~il~~Q~~ 116 (414)
.-+.|-++.+|-...|.+-..-.|+. ++.+|++|-..+++-+.+. |.+.=.-++++ .+|.+.++-++-|++
T Consensus 328 QYFvWYLv~LPl~l~~~~l~wkr~l~--ll~lW~~~Q~lWL~~aY~lEf~gkNtF~~i~Lag~lFf~~N~~iL~qii 402 (405)
T KOG3893|consen 328 QYFVWYLVLLPLVLPNFMLSWKRALG--LLFLWFITQALWLLPAYLLEFQGKNTFYPIFLAGLLFFATNVYILKQII 402 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999776666654 5668999999999987753 21222224454 668888999999985
No 31
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=28.49 E-value=1.2e+02 Score=27.16 Aligned_cols=51 Identities=20% Similarity=0.055 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHH
Q 015046 309 GIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVA 359 (414)
Q Consensus 309 ~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~ 359 (414)
.+.+++=..+..+-.++-+||++.-.|++.+|.+.-.++++.-+.-++|.+
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 455666667888889999999999999999999888877776666666654
No 32
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=28.42 E-value=1.9e+02 Score=27.76 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=45.3
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHHHHHHhheec
Q 015046 339 VEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSFILIQFIYYR 399 (414)
Q Consensus 339 t~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~iil~Q~~~Y~ 399 (414)
+||++++..++.+..+..|.--+ .++-++.-.=|..++|.+.+++|=.+.++++--.
T Consensus 62 ~D~~P~~~~l~si~s~~~Y~~~L----~~fP~i~ltsp~Fi~S~~lvi~nH~lwf~~F~~~ 118 (211)
T PF04148_consen 62 FDGFPFWLTLFSIFSHLVYLRNL----RTFPFISLTSPSFILSCVLVILNHFLWFRHFSSP 118 (211)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh----CCCCeeecCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999987422 3344555556778889999999999999998655
No 33
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=28.41 E-value=3.6e+02 Score=28.60 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhHHHH--HHHHhhCCCCCcCHH--HHHHHHHhhHH----------
Q 015046 17 CAEWARIYMEYCLCSVRDGVSLGLGLASVISWGVAEVPQI--ITNYKEKSTEGLSIA--FLTTWILGDLF---------- 82 (414)
Q Consensus 17 ~~~wi~~~f~~C~~~~~~~~s~~lG~is~~~w~~~~lPQI--~~N~r~KS~eGLS~~--fl~~wl~Gd~~---------- 82 (414)
.++.+..|=.+|+.......+.+++++.+.+.++..=+|+ ++.|-....-|||=. .|++-++-|+|
T Consensus 285 aieL~~~~n~~si~~i~nl~tDli~~~~f~~l~i~~k~~l~IL~s~~~E~~Y~LSDt~KAF~IIL~TDlfVGFHSphGWE 364 (422)
T PRK02507 285 AEELAEEARYESLNAIKNVFADLFSLIAFAVVLIFSREEIEVLKSFLDEIVYGLSDSAKAFIIILFTDIFVGFHSPHGWE 364 (422)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 4778888888999888999999999999988888777764 678888888899865 46777888886
Q ss_pred HHHHHHhcCCCch-----HHHHHHHHHHHHHHHHHhhhhhcccc
Q 015046 83 NVFGCLLEPATLP-----TQYYMAMLYTLTTVILTAQTMYYSHI 121 (414)
Q Consensus 83 nl~g~~l~~~~lp-----~q~~~a~~~~~~d~il~~Q~~yY~~~ 121 (414)
-++..++.+..+| +..+.|.+=+++|.+ +-||.|++.
T Consensus 365 vll~~i~~HfGl~~n~~~I~lFVaTfPViLDTi--FKYWIFRyL 406 (422)
T PRK02507 365 VILEGIARHFGLPENRNFIFLFIATFPVILDTI--FKYWIFRYL 406 (422)
T ss_pred HHHHHHHHhcCCCcccchHHHHHhhhhHHHHHH--HHHHHHhhc
Confidence 2345565543344 234456667888877 788888753
No 34
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=27.34 E-value=62 Score=31.65 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=11.1
Q ss_pred CCCCCCCCchhhHHHHHHHHHhh
Q 015046 7 EVAVCPSNLHCAEWARIYMEYCL 29 (414)
Q Consensus 7 ~~~~C~~~~~~~~wi~~~f~~C~ 29 (414)
|.-+||+ |||||+
T Consensus 190 eyVsCPN----------YfgEii 202 (257)
T KOG1638|consen 190 EYVSCPN----------YFGEII 202 (257)
T ss_pred EEeecch----------HHHHHH
Confidence 7789998 888888
No 35
>CHL00043 cemA envelope membrane protein
Probab=25.33 E-value=5.7e+02 Score=25.32 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhHHHH--HHHHhhCCCCCcCHH--HHHHHHHhhHHH--------
Q 015046 16 HCAEWARIYMEYCLCSVRDGVSLGLGLASVISWGVAEVPQI--ITNYKEKSTEGLSIA--FLTTWILGDLFN-------- 83 (414)
Q Consensus 16 ~~~~wi~~~f~~C~~~~~~~~s~~lG~is~~~w~~~~lPQI--~~N~r~KS~eGLS~~--fl~~wl~Gd~~n-------- 83 (414)
..++.+..|=.+|........+.+++.+...+.++..=+|+ .+.|-....-|||=. .+++-++-|+|-
T Consensus 123 kaieL~~~~n~~~i~~i~n~~td~i~~~~~~~~~i~~k~~l~il~s~~~E~~Y~LSDt~KAF~IiL~TDlfvGFHSphGW 202 (261)
T CHL00043 123 ETIQLAKIYNEDSIHTILHLSTNIISFAILSGLSILGKEELVILNSWLQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGW 202 (261)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCchhH
Confidence 34778888888999888999999999999999988887774 567788888888854 466777888862
Q ss_pred --HHHHHhcCCCch-----HHHHHHHHHHHHHHHHHhhhhhcccc
Q 015046 84 --VFGCLLEPATLP-----TQYYMAMLYTLTTVILTAQTMYYSHI 121 (414)
Q Consensus 84 --l~g~~l~~~~lp-----~q~~~a~~~~~~d~il~~Q~~yY~~~ 121 (414)
+++.++.+-.+| +..+.|.+=+++|.+ +-||.|++.
T Consensus 203 Evli~~i~~hfGl~~n~~~I~lfVatfPViLDti--FKYWIFRyL 245 (261)
T CHL00043 203 ELLIGSIYKHFGFAHNDQIISLLVSTFPVILDTI--FKYWIFRYL 245 (261)
T ss_pred HHHHHHHHHhcCCCcccchHHHHHHhhhHHHHHH--HHHHHHhhc
Confidence 345555432233 234456777888987 788888753
No 36
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=24.86 E-value=5.2e+02 Score=24.16 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhhcchhhhhhHHhcCccCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHH-HHH
Q 015046 310 IGSYLGWAMAAIYMGGRLPQICLNIRRGHVEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCV-LLD 388 (414)
Q Consensus 310 ~g~ilG~is~~l~~~sriPQI~~NyrrKSt~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~-~lD 388 (414)
+.+++=..+.-+-.++-+||++.--+...+|-+..-.++...+=-..|...-+....-..-=..++|...|-+-++ -.|
T Consensus 116 isnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~D 195 (214)
T COG5196 116 ISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLD 195 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 4555556677778888999999999999999988877766666555565433332111111124677777655553 346
Q ss_pred HHHHH
Q 015046 389 SFILI 393 (414)
Q Consensus 389 ~iil~ 393 (414)
+..+.
T Consensus 196 Ff~iY 200 (214)
T COG5196 196 FFAIY 200 (214)
T ss_pred hHHhh
Confidence 65443
No 37
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.81 E-value=2.2e+02 Score=24.73 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=33.9
Q ss_pred hhhhHHhcCc-cCccCHHHHHHHHHHHHHHHHHHhhcccCccccccchhhHHHhHHHHHHHHH
Q 015046 329 QICLNIRRGH-VEGLNPLMFVFALVGNATYVASILVNSVDWSRIRPNLPWLADAGGCVLLDSF 390 (414)
Q Consensus 329 QI~~NyrrKS-t~GlS~~~~~~~~~Gn~~y~~si~~~~~~~~~l~~~lp~l~~s~~~~~lD~i 390 (414)
..++-|.++. .||+......+-++|-+.|.. +++.+-|-+-.+...+++.++
T Consensus 50 ~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA----------~vraqyPeiGSNFfp~il~l~ 102 (117)
T PF07226_consen 50 CLYQRYLNHPMPEGTPKLALACFFLGLFGYSA----------FVRAQYPEIGSNFFPSILCLI 102 (117)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH----------HHHHhchhhhhhHHHHHHHHH
Confidence 4455566564 479999999999999999975 223344555555555554433
No 38
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=22.85 E-value=86 Score=24.68 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=23.4
Q ss_pred CCcchhHHHHHHHHHHHHhhcchhhhhhHHhcCccCc
Q 015046 305 GGSSGIGSYLGWAMAAIYMGGRLPQICLNIRRGHVEG 341 (414)
Q Consensus 305 ~~~~~~g~ilG~is~~l~~~sriPQI~~NyrrKSt~G 341 (414)
+.+..+|.+.|.+.+++....-+===++-.|||..+|
T Consensus 31 ~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a~g 67 (68)
T PF04971_consen 31 SQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAARG 67 (68)
T ss_pred ccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhhcC
Confidence 4477888888877665554443333344558887765
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=5.3e+02 Score=28.04 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCCCCchhhHHHHHHHHHhh-----cchhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh-CCCCCcCHHHHH------
Q 015046 7 EVAVCPSNLHCAEWARIYMEYCL-----CSVRDGVSLGLGLASVISWGVAEVPQIITNYKE-KSTEGLSIAFLT------ 74 (414)
Q Consensus 7 ~~~~C~~~~~~~~wi~~~f~~C~-----~~~~~~~s~~lG~is~~~w~~~~lPQI~~N~r~-KS~eGLS~~fl~------ 74 (414)
....-|.|.-|-.....|+--|+ .......-+.+-.+-++.+--.+||||+.|-++ -|..-|-..+++
T Consensus 415 ~~e~s~~g~l~grf~fm~lv~~~~~l~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv~R 494 (636)
T KOG0828|consen 415 SNENSPWGILLGRFLFMYLVVCIASLYSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTVTR 494 (636)
T ss_pred cccCCcchhhHHhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhHHh
Q ss_pred ----HHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhh
Q 015046 75 ----TWILGDLFNVFGCLLEPATLPTQYYMAMLYTLTTVILTAQ 114 (414)
Q Consensus 75 ----~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~d~il~~Q 114 (414)
+.++|+.-|+.+ ... ..-|.+.++.+..+.-.+++.|
T Consensus 495 l~~plyVF~~s~n~~r--~~p-~~~f~v~L~lwmlFQv~vLl~Q 535 (636)
T KOG0828|consen 495 LAIPLYVFGCSENFMR--VEP-KYFFAVGLVLWMLFQVLVLLVQ 535 (636)
T ss_pred hhcceEEEecchhhhc--cCC-chhhHHHHHHHHHHHHHHHHHH
No 40
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=21.19 E-value=7.2e+02 Score=24.07 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhhHHHH--HHHHhhCCCCCcCHH--HHHHHHHhhHHH--------
Q 015046 16 HCAEWARIYMEYCLCSVRDGVSLGLGLASVISWGVAEVPQI--ITNYKEKSTEGLSIA--FLTTWILGDLFN-------- 83 (414)
Q Consensus 16 ~~~~wi~~~f~~C~~~~~~~~s~~lG~is~~~w~~~~lPQI--~~N~r~KS~eGLS~~--fl~~wl~Gd~~n-------- 83 (414)
..++.+..|=.+|........+++++.+...+.++..=+|+ ++.|-.+.--|||=. .+++-++-|+|-
T Consensus 92 ka~~l~~~~~~~~~~~i~n~~~d~i~~~~~~~~~~~~~~~l~il~s~~~e~~y~LsDt~KaF~iil~tD~~vGfHS~~GW 171 (230)
T PF03040_consen 92 KAIELAKEYNEESIHAILNLFTDIISFIIFSGLLILGKEQLAILNSWIQEFFYSLSDTAKAFLIILFTDLFVGFHSPHGW 171 (230)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhCccHHHHHHHHHHHHhhhhcCCCCccH
Confidence 35788888888999888999999999999999999888874 567888888888854 466777888862
Q ss_pred --HHHHHhcCCCch-----HHHHHHHHHHHHHHHHHhhhhhcccc
Q 015046 84 --VFGCLLEPATLP-----TQYYMAMLYTLTTVILTAQTMYYSHI 121 (414)
Q Consensus 84 --l~g~~l~~~~lp-----~q~~~a~~~~~~d~il~~Q~~yY~~~ 121 (414)
++..++.+-.+| +.++.|.+=+++|.+ +-||.+++.
T Consensus 172 e~~i~~~~~hfG~~~n~~~i~~fvatfPViLDt~--fKyWIFryL 214 (230)
T PF03040_consen 172 EVIIESILEHFGLPENEQFISLFVATFPVILDTI--FKYWIFRYL 214 (230)
T ss_pred HHHHHHHHHhcCCCcccchhhhhhhhhhHHHHHH--HHHhhhccc
Confidence 334454432222 344567777888987 788888753
No 41
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=20.32 E-value=4.4e+02 Score=22.78 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCCCCCcCH--HHHHHHHHhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 015046 53 VPQIITNYKEKSTEGLSI--AFLTTWILGDLFNVFGCLLEPATLPTQYYMAMLYTLT 107 (414)
Q Consensus 53 lPQI~~N~r~KS~eGLS~--~fl~~wl~Gd~~nl~g~~l~~~~lp~q~~~a~~~~~~ 107 (414)
+-.++++|.+|..+-+-+ .|++.-++-.+.-.+||++.+ ..|+-.+++.+...+
T Consensus 8 ~~~~~~~Y~~~Tp~rlkliD~fl~f~~~~gilQfvYc~lvg-tFPFNaFLsGf~s~V 63 (112)
T PF02109_consen 8 LSNFWQSYLKKTPQRLKLIDAFLAFLVLTGILQFVYCILVG-TFPFNAFLSGFISCV 63 (112)
T ss_pred HHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHhHheeec-CCchHHHHHHHHHHH
Confidence 345678887766554443 244444455567788999996 799998888776655
Done!