Query 015046
Match_columns 414
No_of_seqs 250 out of 1320
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 20.6 43 0.0015 23.1 1.6 30 374-403 10-39 (44)
2 2ljb_A M2 protein, BM2 protein 15.0 2.1E+02 0.0071 18.5 3.7 26 31-56 7-32 (35)
3 2l2t_A Receptor tyrosine-prote 11.1 1.8E+02 0.0061 19.9 2.7 30 374-403 8-38 (44)
4 2knc_A Integrin alpha-IIB; tra 10.2 2.7E+02 0.0091 19.9 3.5 15 390-404 31-45 (54)
5 3l1l_A Arginine/agmatine antip 6.8 1.3E+03 0.046 21.6 8.3 27 16-49 72-98 (445)
6 1z7l_A Ubiquitin-activating en 6.3 2.1E+02 0.0071 27.0 1.9 28 4-31 10-43 (276)
7 3bkd_A Transmembrane domain of 5.8 5.4E+02 0.018 15.4 2.9 21 32-52 4-24 (26)
8 2ks1_B Epidermal growth factor 5.7 3.5E+02 0.012 18.4 2.3 17 385-401 21-37 (44)
9 2k9y_A Ephrin type-A receptor 5.0 7.1E+02 0.024 15.8 3.6 11 373-383 10-20 (41)
10 2kih_A Matrix protein 2; S31N, 4.8 7.6E+02 0.026 16.4 3.3 31 31-61 7-39 (43)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.56 E-value=43 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.032 Sum_probs=17.4
Q ss_pred chhhHHHhHHHHHHHHHHHHHhheecCCCC
Q 015046 374 NLPWLADAGGCVLLDSFILIQFIYYRYRSF 403 (414)
Q Consensus 374 ~lp~l~~s~~~~~lD~iil~Q~~~Y~~~~~ 403 (414)
..|.+.+..+.+++-+++.+-.++|-++++
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 456676666666655566555555544433
No 2
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=15.05 E-value=2.1e+02 Score=18.52 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHHHH
Q 015046 31 SVRDGVSLGLGLASVISWGVAEVPQI 56 (414)
Q Consensus 31 ~~~~~~s~~lG~is~~~w~~~~lPQI 56 (414)
.+..++++++|++=.+.|++-++-|+
T Consensus 7 DplviaA~IigiLHlilWildrLff~ 32 (35)
T 2ljb_A 7 DPLVVAASIIGILHFIAWTIGHLNQI 32 (35)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 35678899999999999999888775
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.11 E-value=1.8e+02 Score=19.94 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=13.1
Q ss_pred chhhHHHhHHH-HHHHHHHHHHhheecCCCC
Q 015046 374 NLPWLADAGGC-VLLDSFILIQFIYYRYRSF 403 (414)
Q Consensus 374 ~lp~l~~s~~~-~~lD~iil~Q~~~Y~~~~~ 403 (414)
+.|-+.+..+. +++-+++..-.++|.++++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34444433332 4444444444455544433
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.21 E-value=2.7e+02 Score=19.88 Aligned_cols=15 Identities=0% Similarity=0.146 Sum_probs=6.6
Q ss_pred HHHHHhheecCCCCc
Q 015046 390 FILIQFIYYRYRSFQ 404 (414)
Q Consensus 390 iil~Q~~~Y~~~~~~ 404 (414)
+++..+=+++++++.
T Consensus 31 ~~LwK~GFFkR~~~~ 45 (54)
T 2knc_A 31 LAMWKVGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHTTTTCCS
T ss_pred HHHHHcCcccCCCCC
Confidence 334444345555443
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.76 E-value=1.3e+03 Score=21.56 Aligned_cols=27 Identities=7% Similarity=-0.089 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 015046 16 HCAEWARIYMEYCLCSVRDGVSLGLGLASVISWG 49 (414)
Q Consensus 16 ~~~~wi~~~f~~C~~~~~~~~s~~lG~is~~~w~ 49 (414)
+...|+.+.||+ .++.+.|+...+.+.
T Consensus 72 g~y~~~~~~~G~-------~~g~~~g~~~~~~~~ 98 (445)
T 3l1l_A 72 GSYAYARRCFGP-------FLGYQTNVLYWLACW 98 (445)
T ss_dssp THHHHHHHHSCH-------HHHHHHHHHHHHHHH
T ss_pred CchhhHHhHcCC-------hHHHHHHHHHHHHHH
Confidence 456777777763 344555555544443
No 6
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=6.35 E-value=2.1e+02 Score=27.01 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=18.8
Q ss_pred CCCCCCCC-----CCC-chhhHHHHHHHHHhhcc
Q 015046 4 FKSEVAVC-----PSN-LHCAEWARIYMEYCLCS 31 (414)
Q Consensus 4 ~~~~~~~C-----~~~-~~~~~wi~~~f~~C~~~ 31 (414)
|+...+.| |.. .|||+|.++.|..-+..
T Consensus 10 ~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~ 43 (276)
T 1z7l_A 10 FEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQ 43 (276)
T ss_dssp ----CCHHHHHTCCCSHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCceeccCCCCCChhHHHHHHHHHHHHHHcC
Confidence 55667778 553 69999999999876653
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=5.85 E-value=5.4e+02 Score=15.42 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 015046 32 VRDGVSLGLGLASVISWGVAE 52 (414)
Q Consensus 32 ~~~~~s~~lG~is~~~w~~~~ 52 (414)
+...+.+++|++-..+|++-+
T Consensus 4 plv~aa~iiGilHLiLwIldr 24 (26)
T 3bkd_A 4 PLVVAASIMGILHLILWILDR 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhh
Confidence 456788999999999998754
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.70 E-value=3.5e+02 Score=18.37 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhheecCC
Q 015046 385 VLLDSFILIQFIYYRYR 401 (414)
Q Consensus 385 ~~lD~iil~Q~~~Y~~~ 401 (414)
+++-+++.+-.++|.++
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44444444444444433
No 9
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=4.98 E-value=7.1e+02 Score=15.80 Aligned_cols=11 Identities=0% Similarity=-0.278 Sum_probs=5.6
Q ss_pred cchhhHHHhHH
Q 015046 373 PNLPWLADAGG 383 (414)
Q Consensus 373 ~~lp~l~~s~~ 383 (414)
.+++.++++..
T Consensus 10 ~~~~~I~~~vv 20 (41)
T 2k9y_A 10 SGNLAVIGGVA 20 (41)
T ss_dssp CSSTHHHHHHH
T ss_pred CceEEEEeehh
Confidence 35566554443
No 10
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=4.76 E-value=7.6e+02 Score=16.43 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhHH--HHHHHHh
Q 015046 31 SVRDGVSLGLGLASVISWGVAEVP--QIITNYK 61 (414)
Q Consensus 31 ~~~~~~s~~lG~is~~~w~~~~lP--QI~~N~r 61 (414)
++..++..++|++-.++|++-++- -||..+|
T Consensus 7 dplv~aa~iiGIlHLiLwildRlffkciyrrfk 39 (43)
T 2kih_A 7 DPLVVAANIIGILHLILWILDRLFFKSIYRFFE 39 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999986543 3444444
Done!