Citrus Sinensis ID: 015047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MHGLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRRP
ccccHHHHHHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccEEEccccccccccccccHHHHHHHHccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccHHHHHHccccccHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHccc
cccccHHHHHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHHEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHcccEEEEcccHHHcccEEEEcccHcccccccccHHHHHHHcccccccccccEEEEcccccccEEEEEEEcccHHcccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccHHHHHHcccHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHccc
mhglsficlAPFVVLYKIMITNTIAKGKKIAVLSIdgggvrgiiPGTILAFLESQLqdldgpkariadyfdivsgtstGGLIAtmltapdkdrrpifaakDINKFyfkhcpeifpqdscknfprsvtsplrkwvrpmydgkymRTLTNRILgeitikdtltnliiptfdvkrlqpvifstndgkihALKNarladmcigtsaaptylpahcfvtkdpitgdtccfdlidggvaandpTLVAISRILLEVLKhnaefddikpidsRQMLVLSLgtgaakeptnyytarktsewgMLRWAfyrgrmpmlDVFLDASSDMVDFHVSaffqssyckanylriqddtltsdsakfdnfTEENMQNLEEIGLKLlkkpvsrvdldtgrfrksegegnnDKALVRFAKQLYgqrkldqrrp
MHGLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMltapdkdrrpIFAAKDINKFYFKHCPEifpqdscknfprsvtsplrkwvrpmydgKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNaefddikpidsRQMLVLSLgtgaakeptnyytarktsewgMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIglkllkkpvsrvdldtgrfrksegegnndkalvrfakqlygqrkldqrrp
MHGLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRRP
***LSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLT******************EIGLKLL*********************************************
**GLSFICLAPFV*****************AVLSIDGGGVRGIIPGTILAFLESQLQD**GPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEP***YTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKS****NNDKALVRFAKQLY***KL*****
MHGLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRRP
**GLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHGLSFICLAPFVVLYKIMITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRRP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.898 0.961 0.399 1e-76
Q3YJT2386 Patatin-2-Kuras 2 OS=Sola N/A no 0.886 0.950 0.405 7e-72
Q42502386 Patatin-2-Kuras 3 OS=Sola N/A no 0.850 0.911 0.425 1e-71
Q2MY41386 Patatin-10 OS=Solanum tub N/A no 0.886 0.950 0.408 5e-71
Q2MY52386 Patatin group M-2 OS=Sola N/A no 0.886 0.950 0.413 5e-71
Q3YJT3374 Patatin-2-Kuras 1 OS=Sola N/A no 0.850 0.941 0.418 6e-71
Q2MY37386 Patatin-14 OS=Solanum tub N/A no 0.886 0.950 0.408 8e-71
P11768386 Patatin group M-1 OS=Sola N/A no 0.886 0.950 0.408 8e-71
Q3YJT0374 Patatin-2-Kuras 4 OS=Sola N/A no 0.850 0.941 0.423 2e-70
Q2MY51386 Patatin group M-3 OS=Sola N/A no 0.886 0.950 0.405 4e-70
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 242/408 (59%), Gaps = 36/408 (8%)

Query: 5   SFICLAPFVVLYKIMITNTIAKGKK-IAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-P 62
           SF+ L   +V+     ++T A  ++ + VLSIDGGGV+GIIPGTIL FLE QLQ +D   
Sbjct: 6   SFLIL---IVMILATTSSTFASLEEMVTVLSIDGGGVKGIIPGTILEFLEGQLQKMDNNA 62

Query: 63  KARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNF 122
            AR+ADYFD++ GTSTGGL+  M+T P+++ RP  AA +I  FYF+H P IF   + + F
Sbjct: 63  DARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFF 122

Query: 123 PRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTND 182
                        P YDGKY+  +    LGE  +   LT + I +FD+K  +PVIF+ ++
Sbjct: 123 ------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSN 170

Query: 183 GKIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVA-ANDPTLVA 241
                  +A++ D+C  T+AAPTY P H F T + I GD   F+L+DG VA   DP L++
Sbjct: 171 LAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALLS 229

Query: 242 ISRILLEVLKHNAEFDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYR 301
           +S +     + +  F  I+ ++ ++ML+LSLGTG   E    +TA +T++WG L+W    
Sbjct: 230 VS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWMLVI 288

Query: 302 GRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNL 361
            +M        ASS M D+++S  FQ  + + NYLR+Q++ LT  + K D+ +E NM+ L
Sbjct: 289 QQMTEA-----ASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELL 343

Query: 362 EEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKL 409
            ++G  LLKKPVS+ + +T            ++AL RFAK L  ++KL
Sbjct: 344 AQVGENLLKKPVSKDNPET-----------YEEALKRFAKLLSDRKKL 380
Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q3YJT2|PT2K2_SOLTU Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1 Back     alignment and function description
>sp|Q42502|PT2K3_SOLTU Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY41|PAT10_SOLTU Patatin-10 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY52|PATM2_SOLTU Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT3|PT2K1_SOLTU Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY37|PAT14_SOLTU Patatin-14 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P11768|PATM1_SOLTU Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT0|PT2K4_SOLTU Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1 Back     alignment and function description
>sp|Q2MY51|PATM3_SOLTU Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
225470462397 PREDICTED: patatin group A-3-like [Vitis 0.942 0.982 0.590 1e-131
147816211397 hypothetical protein VITISV_024099 [Viti 0.942 0.982 0.588 1e-130
296084716378 unnamed protein product [Vitis vinifera] 0.903 0.989 0.599 1e-128
449521132393 PREDICTED: patatin group A-3-like [Cucum 0.917 0.966 0.569 1e-121
359497058388 PREDICTED: LOW QUALITY PROTEIN: patatin 0.929 0.992 0.587 1e-121
449460680393 PREDICTED: patatin group A-3-like [Cucum 0.917 0.966 0.564 1e-120
9794870411 patatin-like protein 3 [Nicotiana tabacu 0.920 0.927 0.564 1e-117
449521130395 PREDICTED: LOW QUALITY PROTEIN: patatin 0.925 0.969 0.573 1e-116
242040711437 hypothetical protein SORBIDRAFT_01g03338 0.927 0.878 0.529 1e-116
62766606434 patatin-like protein [Gossypium hirsutum 0.925 0.882 0.542 1e-115
>gi|225470462|ref|XP_002262942.1| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/396 (59%), Positives = 295/396 (74%), Gaps = 6/396 (1%)

Query: 20  ITNTIAKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTG 79
           +  +  KG+ + VLSIDGGGVRGIIPGT+LAFLES+ Q+LDG  ARIADYFD+++GTSTG
Sbjct: 1   MATSFGKGRMVTVLSIDGGGVRGIIPGTLLAFLESKFQELDGDDARIADYFDVIAGTSTG 60

Query: 80  GLIATMLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTS---PLRKWVR- 135
           GL+  MLTAP+KD RP+FAAKDIN FY  HCPEIFPQ+   +F +S  S    L   VR 
Sbjct: 61  GLVTAMLTAPNKDNRPVFAAKDINSFYLDHCPEIFPQNRRISFGKSTISRFGSLIDAVRG 120

Query: 136 PMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLAD 195
           P Y+GKY+++L   +L ++ +K TLTN++IPTFD+K LQPVIFST++ K++  KNARL+D
Sbjct: 121 PKYNGKYLQSLAVDLLDKVYLKQTLTNVVIPTFDIKLLQPVIFSTDEAKVNVAKNARLSD 180

Query: 196 MCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAE 255
           +CI TSAAPTYLPAH F TK+   G T  F+LIDGGVAAN+PTLVA+S I  E+L  N +
Sbjct: 181 ICISTSAAPTYLPAHYFETKEA-NGKTRSFNLIDGGVAANNPTLVAMSHISKEILMDNTQ 239

Query: 256 FDDIKPIDSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASS 315
           F ++KP+DS+ MLVLSLGTGA K     Y+A + S WG+ RWA+  G  P+LD+F  ASS
Sbjct: 240 FIEMKPMDSKSMLVLSLGTGAPKHEEK-YSAAEASRWGLHRWAYNNGATPLLDIFSHASS 298

Query: 316 DMVDFHVSAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSR 375
           DMVD HVS  FQS  C+ NYLRIQDDTLT + +  D  T EN+Q L EIG +LL KP+SR
Sbjct: 299 DMVDIHVSTVFQSLGCEKNYLRIQDDTLTGEESSVDVATTENLQRLGEIGKELLAKPLSR 358

Query: 376 VDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQ 411
           V+L+TGR  + EGEG N +AL +FAK L  +RK  Q
Sbjct: 359 VNLETGRHEQLEGEGTNQEALTQFAKLLSEERKFRQ 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147816211|emb|CAN62059.1| hypothetical protein VITISV_024099 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084716|emb|CBI25858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521132|ref|XP_004167585.1| PREDICTED: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359497058|ref|XP_003635410.1| PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460680|ref|XP_004148073.1| PREDICTED: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|9794870|gb|AAF98369.1|AF158253_1 patatin-like protein 3 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449521130|ref|XP_004167584.1| PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242040711|ref|XP_002467750.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] gi|241921604|gb|EER94748.1| hypothetical protein SORBIDRAFT_01g033380 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|62766606|gb|AAX99411.1| patatin-like protein [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2066286407 PLA2A "phospholipase A 2A" [Ar 0.922 0.938 0.507 2.2e-98
TAIR|locus:2115065428 PLP4 "AT4G37050" [Arabidopsis 0.927 0.897 0.477 1e-91
TAIR|locus:2114995414 PLP1 [Arabidopsis thaliana (ta 0.915 0.915 0.455 1e-91
TAIR|locus:2158337401 AT5G43590 [Arabidopsis thalian 0.893 0.922 0.447 2.2e-82
TAIR|locus:2056088499 PLP6 "PATATIN-like protein 6" 0.630 0.523 0.335 1.3e-30
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.603 0.651 0.340 7.1e-29
TAIR|locus:2082702488 pPLAIIIbeta "patatin-related p 0.553 0.469 0.352 2.5e-28
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.591 0.690 0.278 7.6e-22
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.591 0.690 0.278 7.6e-22
WB|WBGene00022233546 Y73B6BL.4 [Caenorhabditis eleg 0.454 0.344 0.330 1.2e-07
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 198/390 (50%), Positives = 271/390 (69%)

Query:    27 GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATML 86
             G  + +LSIDGGG+RG+IP  IL FLES+LQ LDG +AR+ADYFD+++GTSTGGL+  ML
Sbjct:    16 GNLVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75

Query:    87 TAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVR-PMYDGKYMRT 145
             TAP+K+ RP+FAA +I  FY + CP+IFPQD   +FP S    L K +  P YDGKY+  
Sbjct:    76 TAPNKEGRPLFAASEIKDFYLEQCPKIFPQD---HFPFSAAKKLVKSLTGPKYDGKYLHQ 132

Query:   146 LTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPT 205
             L +  LG+  +  TLTN++IPTFD+K LQP IFS+ + K H LK+A LAD+ I TSAAPT
Sbjct:   133 LIHAKLGDTKLSQTLTNVVIPTFDIKHLQPTIFSSYEVKNHPLKDATLADIAISTSAAPT 192

Query:   206 YLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSR 265
             YLPAH F  +D + G+   ++LIDGGVAAN+P L+AI  +  E+   +++F  I+P D  
Sbjct:   193 YLPAHFFKVED-LNGNAKEYNLIDGGVAANNPALLAIGEVTNEISGGSSDFFPIRPNDYG 251

Query:   266 QMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAF 325
             + LVLSLGTG  K    +  A++ + WG+L W  +    P++D F  ASSDMVDFH+SA 
Sbjct:   252 RFLVLSLGTGNHKAEEKF-NAKEVAGWGLLNWLTHDNSTPIIDAFSQASSDMVDFHLSAV 310

Query:   326 FQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRK 385
             F++ + +ANY+RIQDDTLT D+A  D  T EN+  L + G +LLKKPV+RV+LD+G   +
Sbjct:   311 FRALHSEANYIRIQDDTLTGDAASVDIATVENLDILAKTGDELLKKPVARVNLDSG-CNE 369

Query:   386 SEGEGNNDKALVRFAKQLYGQRKL-DQRRP 414
             +  E  N+ AL++ A  L  ++K+ D R P
Sbjct:   370 NAYETTNEHALIKLAGILSKEKKIRDIRSP 399
GO:0006629 "lipid metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0045735 "nutrient reservoir activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IEP;IMP
GO:0016020 "membrane" evidence=IDA
GO:0016298 "lipase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0008219 "cell death" evidence=IGI
GO:0031408 "oxylipin biosynthetic process" evidence=IMP
GO:0051607 "defense response to virus" evidence=IMP
GO:0071456 "cellular response to hypoxia" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009646 "response to absence of light" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
WB|WBGene00022233 Y73B6BL.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 1e-169
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 7e-75
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 8e-65
COG3621394 COG3621, COG3621, Patatin [General function predic 7e-33
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 1e-32
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 8e-21
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 2e-20
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 2e-17
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 4e-15
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 8e-13
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 3e-09
cd01819155 cd01819, Patatin_and_cPLA2, Patatins and Phospholi 1e-06
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 2e-06
cd07208266 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical pa 0.002
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information 
 Score =  476 bits (1228), Expect = e-169
 Identities = 205/359 (57%), Positives = 263/359 (73%), Gaps = 14/359 (3%)

Query: 27  GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATML 86
           GK I VLSIDGGG+RGIIP TIL FLE +LQ+LDGP ARIADYFD+++GTSTGGLI  ML
Sbjct: 1   GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAML 60

Query: 87  TAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVR----PMYDGKY 142
           TAP++++RP+FAAKDI +FY ++ P+IFPQ              RK +R    P YDG Y
Sbjct: 61  TAPNENKRPLFAAKDIVQFYLENGPKIFPQ------STGQFEDDRKKLRSLLGPKYDGVY 114

Query: 143 MRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSA 202
           +  L N +LG+  + DTLTN++IPTFD+K LQPVIFS++  K   L NARLAD+CI TSA
Sbjct: 115 LHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKNDKLTNARLADVCISTSA 174

Query: 203 APTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPI 262
           APTY PAH F T+D   GD   F+L+DGGVAAN+PTL+AIS +  E++K N  F  IKP+
Sbjct: 175 APTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPL 233

Query: 263 DSRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHV 322
           D +++LVLSLGTG+A+E   Y  A K   WG++ W    G  P++D+F +ASSDMVD+H+
Sbjct: 234 DYKKLLVLSLGTGSAEESYKYNAAAK---WGLITWLSENGXTPIIDIFSNASSDMVDYHL 290

Query: 323 SAFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTG 381
           S  FQ+   + NYLRIQDD+LT  ++  D+ TEEN++ L EIG KLLKKPVSRV+L+TG
Sbjct: 291 SVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG 349

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349
>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
COG3621394 Patatin [General function prediction only] 100.0
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 100.0
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 100.0
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 100.0
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 100.0
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.98
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.97
PRK10279300 hypothetical protein; Provisional 99.97
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.97
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.96
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.94
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.93
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.93
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.93
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.93
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.93
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.93
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.92
cd07219382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.92
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.91
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.89
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.89
cd07223405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.87
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.85
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.84
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.84
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.84
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.83
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.82
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.8
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.5
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.22
KOG3773354 consensus Adiponutrin and related vesicular transp 99.1
cd00147438 cPLA2_like Cytosolic phospholipase A2, catalytic d 97.59
cd07202430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 95.29
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 94.14
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 92.71
cd07200505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 90.67
smart00022549 PLAc Cytoplasmic phospholipase A2, catalytic subun 90.21
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 90.13
cd07203 552 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA 89.03
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information 
Probab=100.00  E-value=1e-70  Score=541.52  Aligned_cols=349  Identities=58%  Similarity=0.971  Sum_probs=296.4

Q ss_pred             CCceEEEEEcCchHhHHHHHHHHHHHHHHhcccCCCCCCcCCCccEEEecchHHHHHHHHhCCCCCCCcccCHHHHHHHH
Q 015047           27 GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGPKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKFY  106 (414)
Q Consensus        27 ~~~~~iLsLdGGG~rGi~~~giL~~Le~~~~~~~g~~~~l~~~fDli~GtS~G~iia~~l~~~~~~~~p~~s~~e~~~~~  106 (414)
                      ++++|||||||||+||+++++||++||++++++.|++.+++++||+|+|||||||+|++|+.++..++|+++++|+.++|
T Consensus         1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y   80 (349)
T cd07214           1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY   80 (349)
T ss_pred             CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence            46799999999999999999999999999988778788899999999999999999999999977789999999999999


Q ss_pred             HhhCCCCCCCCCCCCCccccchhhhcccCCCCCcHHHHHHHHHHhCcCccccccCceeEEEeeCCCCcceeecCCCCCCC
Q 015047          107 FKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIH  186 (414)
Q Consensus       107 ~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~l~~~~g~~~l~d~~~~l~I~a~d~~~~~~~~f~~~~~~~~  186 (414)
                      .+.+.+||+....  .+..+.+.++.+.+++|+++.|+++|+++|++.+|.|+.++++|+|+|+.+++|++|++++...+
T Consensus        81 ~~~~~~iF~~~~~--~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~~~~~~~  158 (349)
T cd07214          81 LENGPKIFPQSTG--QFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKND  158 (349)
T ss_pred             HHhhHHhcCCCcc--cchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeCccccCC
Confidence            9999999987542  12112233445668999999999999999999999999999999999999999999999987666


Q ss_pred             ccCCchHHHHHHHhccCCCCcCceEeeccCCCCCCcccceeecccccCCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 015047          187 ALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSRQ  266 (414)
Q Consensus       187 ~~~~~~l~da~~ASsAaP~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~NnP~~~Al~ea~~~~~~~~~~~~~~~~~~~~~  266 (414)
                      ...++++|||++||||+|+||||+++.+.+. .|..+++.|||||+++|||+.+|+.||.+....+++.++..+..+.++
T Consensus       159 ~~~~~~l~da~rASSAaPtyFpp~~i~~~~~-~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~  237 (349)
T cd07214         159 KLTNARLADVCISTSAAPTYFPAHYFTTEDS-NGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKK  237 (349)
T ss_pred             cccCcCHHHHHHHhcccccccCCeEeecccC-CCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCe
Confidence            6778999999999999999999999875321 122234579999999999999999999875432222223333345689


Q ss_pred             eEEEEecCCCCCCCCccccccccCCcccccccccCCCCcHHHHHHHhhHHHHHHHHHHHhhhcCCCCCEEEeecCCCCCC
Q 015047          267 MLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLTSD  346 (414)
Q Consensus       267 i~vlSlGTG~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~  346 (414)
                      ++|||||||....   .++..+..+||.++|+.+....|+++++++++++++|++++++++.+.++++|+|||++.+...
T Consensus       238 i~vlSiGTG~~~~---~~~~~~~~~wG~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~  314 (349)
T cd07214         238 LLVLSLGTGSAEE---SYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGT  314 (349)
T ss_pred             EEEEEecCCCccc---ccChhhhccCCeeecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence            9999999999753   4455566899999999665557899999999999999999999977777889999999644444


Q ss_pred             ccccccccHHHHHHHHHHHHHHhcCCCcccccCCC
Q 015047          347 SAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTG  381 (414)
Q Consensus       347 ~~~lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~  381 (414)
                      ..+||+++++|++.|+.+|+++++++...+|+|||
T Consensus       315 ~~~~d~~~~~ni~~L~~~a~~~l~~~~~~~~~~~~  349 (349)
T cd07214         315 ASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG  349 (349)
T ss_pred             ccCcccCCHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence            47899999999999999999999999999999997

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 9e-64
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure 
Iteration: 1

 Score =  240 bits (613), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/386 (39%), Positives = 226/386 (58%), Gaps = 35/386 (9%)
Query: 27  GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATM 85
           G+ + VLSIDGGG+RGIIP TIL FLE QLQ+ D    AR+ADYFD++ GTSTGGL+   
Sbjct: 13  GEXVTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAX 72
Query: 86  LTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRT 145
           ++ P+++ RP  AAK+I  FYF+H P+IF             +P  + + P YDGKY+  
Sbjct: 73  ISTPNENNRPFAAAKEIVPFYFEHGPQIF-------------NPSGQILGPKYDGKYLXQ 119
Query: 146 LTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPT 205
           +    LGE  +   LT ++I +FD+K  +PVIF+ ++       +A+  D+   T+AAPT
Sbjct: 120 VLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPT 179
Query: 206 YLPAHCFVTKDPITGDTCCFDLIDGGVAA-NDPTLVAISRILLEVLKHNAEFDDIKPIDS 264
           Y P H FVT +   GD   F+L+DG VA   DP L++IS +   + + +  F  I+ ++ 
Sbjct: 180 YFPPHYFVT-NTSNGDEYEFNLVDGAVATVADPALLSIS-VATRLAQKDPAFASIRSLNY 237
Query: 265 RQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLD-ASSDMVDFHVS 323
           ++ L+LSLGTG   E    YTA++ + W  + W        ++    D ASS   D+++S
Sbjct: 238 KKXLLLSLGTGTTSEFDKTYTAKEAATWTAVHWXL------VIQKXTDAASSYXTDYYLS 291
Query: 324 AFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRF 383
             FQ+   K NYLR+Q++ LT  + + D+ +E N + L ++G  LLKKPVS  + +T   
Sbjct: 292 TAFQALDSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKPVSEDNPET--- 348
Query: 384 RKSEGEGNNDKALVRFAKQLYGQRKL 409
                    ++AL RFAK L  ++KL
Sbjct: 349 --------YEEALKRFAKLLSDRKKL 366

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1oxw_A373 Patatin; alpha/beta class fold with approximately 1e-100
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  301 bits (770), Expect = e-100
 Identities = 153/390 (39%), Positives = 230/390 (58%), Gaps = 33/390 (8%)

Query: 26  KGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIAT 84
            G+ + VLSIDGGG+RGIIP TIL FLE QLQ++D    AR+ADYFD++ GTSTGGL+  
Sbjct: 12  LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTA 71

Query: 85  MLTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMR 144
           M++ P+++ RP  AAK+I  FYF+H P+IF                 + + P YDGKY+ 
Sbjct: 72  MISTPNENNRPFAAAKEIVPFYFEHGPQIFNPS-------------GQILGPKYDGKYLM 118

Query: 145 TLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAP 204
            +    LGE  +   LT ++I +FD+K  +PVIF+ ++       +A++ D+   T+AAP
Sbjct: 119 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAP 178

Query: 205 TYLPAHCFVTKDPITGDTCCFDLIDGGVAA-NDPTLVAISRILLEVLKHNAEFDDIKPID 263
           TY P H FVT     GD   F+L+DG VA   DP L++IS +   + + +  F  I+ ++
Sbjct: 179 TYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSIS-VATRLAQKDPAFASIRSLN 236

Query: 264 SRQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVS 323
            ++ML+LSLGTG   E    YTA++ + W  + W      + +  +   ASS M D+++S
Sbjct: 237 YKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWM-----LVIQKMTDAASSYMTDYYLS 291

Query: 324 AFFQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRF 383
             FQ+   K NYLR+Q++ LT  + + D+ +E NM+ L ++G  LLKKPVS  + +T   
Sbjct: 292 TAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET--- 348

Query: 384 RKSEGEGNNDKALVRFAKQLYGQRKLDQRR 413
                    ++AL RFAK L  ++KL   +
Sbjct: 349 --------YEEALKRFAKLLSDRKKLRANK 370

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A 577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.95
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.91
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 96.54
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=4.2e-70  Score=542.11  Aligned_cols=357  Identities=43%  Similarity=0.753  Sum_probs=311.9

Q ss_pred             CCCCceEEEEEcCchHhHHHHHHHHHHHHHHhcccCCC-CCCcCCCccEEEecchHHHHHHHHhCCCCCCCcccCHHHHH
Q 015047           25 AKGKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDGP-KARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDIN  103 (414)
Q Consensus        25 ~~~~~~~iLsLdGGG~rGi~~~giL~~Le~~~~~~~g~-~~~l~~~fDli~GtS~G~iia~~l~~~~~~~~p~~s~~e~~  103 (414)
                      ++++++++|||||||+||++++|||++||+++++..|+ +++++++||+|+|||+|||+|++|+.+...++|+|+++++.
T Consensus        11 ~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el~   90 (373)
T 1oxw_A           11 QLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIV   90 (373)
T ss_dssp             -CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHH
T ss_pred             CCCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHHH
Confidence            34577999999999999999999999999998776664 56788999999999999999999999876678999999999


Q ss_pred             HHHHhhCCCCCCCCCCCCCccccchhhhcccCCCCCcHHHHHHHHHHhCcCccccccCceeEEEeeCCCCcceeecCCCC
Q 015047          104 KFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDG  183 (414)
Q Consensus       104 ~~~~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~l~~~~g~~~l~d~~~~l~I~a~d~~~~~~~~f~~~~~  183 (414)
                      ++|.++..++|....             .+.++.|+.+.|++.|++.|++.++.|+.++++|+|||+.++++++|++|..
T Consensus        91 ~~~~~~~~~iF~~~~-------------~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~  157 (373)
T 1oxw_A           91 PFYFEHGPQIFNPSG-------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNL  157 (373)
T ss_dssp             HHHHHHHHHHTCCCC-------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSST
T ss_pred             HHHHHhhHhhcCCCC-------------ccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCC
Confidence            999999888887642             2246789999999999999999999999999999999999999999999987


Q ss_pred             CCCccCCchHHHHHHHhccCCCCcCceEeeccCCCCCCcccceeecccccC-CchHHHHHHHHHHHHHhcCCCCCCCCCC
Q 015047          184 KIHALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAA-NDPTLVAISRILLEVLKHNAEFDDIKPI  262 (414)
Q Consensus       184 ~~~~~~~~~l~da~~ASsAaP~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~-NnP~~~Al~ea~~~~~~~~~~~~~~~~~  262 (414)
                      ...+..++++|+|++||||+|+||||++++..+. +|+.++..|||||+.+ |||+..|+.|+.+ +|..++++++.++.
T Consensus       158 ~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~-~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~-~~~~~~~~~~~~~~  235 (373)
T 1oxw_A          158 ANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATR-LAQKDPAFASIRSL  235 (373)
T ss_dssp             TTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHH-HTTTCGGGTTSTTC
T ss_pred             CCCCccCchHHHHHHHHccCCcCcCcEEeeccCC-CCcccceeeecCcccccCChHHHHHHHHHH-HhccCccccccccc
Confidence            6666778899999999999999999999975421 2432335899999999 9999999999754 56666667777766


Q ss_pred             CCCceEEEEecCCCCCC-CCccccccccCCcccccccccCCCCcHHHHHHHhhHHHHHHHHHHHhhhcCCCCCEEEeecC
Q 015047          263 DSRQMLVLSLGTGAAKE-PTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDD  341 (414)
Q Consensus       263 ~~~~i~vlSlGTG~~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~  341 (414)
                      +.++++|||||||..+. .. .|+.....+||+++|+.     |+++++++++++++|++++++|+.+.++++|||||++
T Consensus       236 ~~~~~~vvSlGTG~~~~~~~-~~~~~~~~~wG~~~w~~-----~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~  309 (373)
T 1oxw_A          236 NYKKMLLLSLGTGTTSEFDK-TYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQEN  309 (373)
T ss_dssp             CGGGEEEEEECCCCBCTTSS-CCCHHHHTTCCHHHHHT-----THHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred             ccCceEEEEecCCCCCCccc-ccChhhhhhhhhHhHHH-----HHHHHHHHhhHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence            77889999999998543 23 56666778999999983     7999999999999999999999877778899999985


Q ss_pred             CCCCCccccccccHHHHHHHHHHHHHHhcCCCcccccCCCcccccCCCCChHHHHHHHHHHHHHHHhhhccC
Q 015047          342 TLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRR  413 (414)
Q Consensus       342 ~l~~~~~~lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~a~~l~~~~~~r~~~  413 (414)
                      .++++..+||+++++||+.|+.+|++|++++++++|+||           |+|+|++||++|+.||++|+.+
T Consensus       310 ~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~t-----------n~~~l~~~a~~L~~e~~~r~~~  370 (373)
T 1oxw_A          310 ALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET-----------YEEALKRFAKLLSDRKKLRANK  370 (373)
T ss_dssp             CBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCB-----------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccccccCCHHHHHHHHHHHHHHHhcccccccchh-----------HHHHHHHHHHHHHHHhhccccc
Confidence            577778899999999999999999999999999999876           9999999999999999998764
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 3e-84
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score =  259 bits (663), Expect = 3e-84
 Identities = 146/388 (37%), Positives = 223/388 (57%), Gaps = 31/388 (7%)

Query: 27  GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATM 85
           G+ + VLSIDGGG+RGIIP TIL FLE QLQ++D    AR+ADYFD++ GTSTGGL+  M
Sbjct: 2   GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAM 61

Query: 86  LTAPDKDRRPIFAAKDINKFYFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRT 145
           ++ P+++ RP  AAK+I  FYF+H P+IF                 + + P YDGKY+  
Sbjct: 62  ISTPNENNRPFAAAKEIVPFYFEHGPQIFNPS-------------GQILGPKYDGKYLMQ 108

Query: 146 LTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKIHALKNARLADMCIGTSAAPT 205
           +    LGE  +   LT ++I +FD+K  +PVIF+ ++       +A++ D+   T+AAPT
Sbjct: 109 VLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPT 168

Query: 206 YLPAHCFVTKDPITGDTCCFDLIDGGVAANDPTLVAISRILLEVLKHNAEFDDIKPIDSR 265
           Y P H FVT      +   F+L+DG VA      +    +   + + +  F  I+ ++ +
Sbjct: 169 YFPPHYFVTNTSNGDEYE-FNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYK 227

Query: 266 QMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAF 325
           +ML+LSLGTG   E    YTA++ + W  + W      + +  +   ASS M D+++S  
Sbjct: 228 KMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWM-----LVIQKMTDAASSYMTDYYLSTA 282

Query: 326 FQSSYCKANYLRIQDDTLTSDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRK 385
           FQ+   K NYLR+Q++ LT  + + D+ +E NM+ L ++G  LLKKPVS  + +T     
Sbjct: 283 FQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET----- 337

Query: 386 SEGEGNNDKALVRFAKQLYGQRKLDQRR 413
                  ++AL RFAK L  ++KL   +
Sbjct: 338 ------YEEALKRFAKLLSDRKKLRANK 359

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 95.16
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=9.3e-59  Score=457.11  Aligned_cols=356  Identities=43%  Similarity=0.745  Sum_probs=298.7

Q ss_pred             CCceEEEEEcCchHhHHHHHHHHHHHHHHhcccCC-CCCCcCCCccEEEecchHHHHHHHHhCCCCCCCcccCHHHHHHH
Q 015047           27 GKKIAVLSIDGGGVRGIIPGTILAFLESQLQDLDG-PKARIADYFDIVSGTSTGGLIATMLTAPDKDRRPIFAAKDINKF  105 (414)
Q Consensus        27 ~~~~~iLsLdGGG~rGi~~~giL~~Le~~~~~~~g-~~~~l~~~fDli~GtS~G~iia~~l~~~~~~~~p~~s~~e~~~~  105 (414)
                      |+.++||||||||+||++++++|++||+++.+..+ ++++++++||+|+|||+|||+|++|+.+.....+.++.+++.+.
T Consensus         2 ~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~   81 (360)
T d1oxwa_           2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPF   81 (360)
T ss_dssp             CSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            57899999999999999999999999999766543 56789999999999999999999999987777778889999999


Q ss_pred             HHhhCCCCCCCCCCCCCccccchhhhcccCCCCCcHHHHHHHHHHhCcCccccccCceeEEEeeCCCCcceeecCCCCCC
Q 015047          106 YFKHCPEIFPQDSCKNFPRSVTSPLRKWVRPMYDGKYMRTLTNRILGEITIKDTLTNLIIPTFDVKRLQPVIFSTNDGKI  185 (414)
Q Consensus       106 ~~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~l~~~~g~~~l~d~~~~l~I~a~d~~~~~~~~f~~~~~~~  185 (414)
                      |.+....+|....             .+.++.|+.+.+++++++.|++.++.+..+++.+++++..++++++|+++....
T Consensus        82 ~~~~~~~~f~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  148 (360)
T d1oxwa_          82 YFEHGPQIFNPSG-------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLAN  148 (360)
T ss_dssp             HHHHHHHHTCCCC-------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTT
T ss_pred             HHhhcchhhhccc-------------cccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEecccccc
Confidence            9888777775532             234788999999999999999999999999999999999999999999998877


Q ss_pred             CccCCchHHHHHHHhccCCCCcCceEeeccCCCCCCcccceeecccccCC-chHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 015047          186 HALKNARLADMCIGTSAAPTYLPAHCFVTKDPITGDTCCFDLIDGGVAAN-DPTLVAISRILLEVLKHNAEFDDIKPIDS  264 (414)
Q Consensus       186 ~~~~~~~l~da~~ASsAaP~~F~p~~i~~~~~~~G~~~~~~~iDGGv~~N-nP~~~Al~ea~~~~~~~~~~~~~~~~~~~  264 (414)
                      .+..+.++|+|++||||+|+||||+++.+... .|....+.|+|||+.+| ||+.+|+.|+.+. |..++........+.
T Consensus       149 ~~~~~~~l~~a~~ASsA~P~~F~p~~~~~~~~-~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l-~~~~~~~~~~~~~~~  226 (360)
T d1oxwa_         149 SPELDAKMYDISYSTAAAPTYFPPHYFVTNTS-NGDEYEFNLVDGAVATVADPALLSISVATRL-AQKDPAFASIRSLNY  226 (360)
T ss_dssp             CGGGCCBHHHHHHHHHCCTTTSCCEEEEEECT-TSCEEEEEEEEGGGGTCSSCHHHHHHHHHHH-TTTCGGGTTSTTCCG
T ss_pred             CCcccchHHHhhhhhhcCCCCCCCEEEecccC-CCCceeEEecccchhhccCchHHHHHHHHHh-cccCccccccccCCc
Confidence            77889999999999999999999999986542 22223457999999875 8999999998764 444333332333456


Q ss_pred             CceEEEEecCCCCCCCCccccccccCCcccccccccCCCCcHHHHHHHhhHHHHHHHHHHHhhhcCCCCCEEEeecCCCC
Q 015047          265 RQMLVLSLGTGAAKEPTNYYTARKTSEWGMLRWAFYRGRMPMLDVFLDASSDMVDFHVSAFFQSSYCKANYLRIQDDTLT  344 (414)
Q Consensus       265 ~~i~vlSlGTG~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~  344 (414)
                      ..++++|+|||..+.....+......+||.++|+     .++.+++.+.+.+++++++..+++.+..+++|||||++.+.
T Consensus       227 ~~~~~~s~gtg~~~~~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~  301 (360)
T d1oxwa_         227 KKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWM-----LVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALT  301 (360)
T ss_dssp             GGEEEEEECCCCBCTTSSCCCHHHHTTCCHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBC
T ss_pred             cceeeeccccccccccccccchhhhhhcchHhHH-----HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcEEEEcCCccc
Confidence            7899999999987654323445567789999998     46888888888899999999988877778899999986555


Q ss_pred             CCccccccccHHHHHHHHHHHHHHhcCCCcccccCCCcccccCCCCChHHHHHHHHHHHHHHHhhhccC
Q 015047          345 SDSAKFDNFTEENMQNLEEIGLKLLKKPVSRVDLDTGRFRKSEGEGNNDKALVRFAKQLYGQRKLDQRR  413 (414)
Q Consensus       345 ~~~~~lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~a~~l~~~~~~r~~~  413 (414)
                      .....|||+|+++|+.|++.|++|+++.....+.           .+|+++|++||++|+.||++|+++
T Consensus       302 ~~~~~lDd~s~~~l~~l~~~g~~~~~~~~~~~~~-----------~~~~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         302 GTTTEMDDASEANMELLVQVGENLLKKPVSEDNP-----------ETYEEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             GGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCC-----------CBHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHhhhhhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhhc
Confidence            6677999999999999999999999987665432           379999999999999999999865
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure