Query 015048
Match_columns 414
No_of_seqs 268 out of 1224
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 99.9 2.2E-26 4.8E-31 253.3 16.4 175 82-261 6-195 (784)
2 COG0466 Lon ATP-dependent Lon 99.9 2.2E-26 4.7E-31 245.8 13.1 172 86-261 9-196 (782)
3 KOG1400 Predicted ATP-dependen 99.9 8.5E-26 1.8E-30 223.6 7.0 261 47-405 26-303 (371)
4 PF02190 LON: ATP-dependent pr 99.9 3.2E-24 7E-29 195.9 14.3 173 86-261 1-198 (205)
5 TIGR00763 lon ATP-dependent pr 99.9 2.3E-24 5E-29 237.3 13.8 168 88-260 1-192 (775)
6 COG2802 Uncharacterized protei 99.8 1E-19 2.2E-24 172.4 12.8 176 82-260 7-198 (221)
7 smart00464 LON Found in ATP-de 98.9 2.7E-09 5.9E-14 88.0 6.7 87 87-261 2-88 (92)
8 KOG2004 Mitochondrial ATP-depe 98.4 1.4E-07 3E-12 102.6 4.1 176 81-260 63-282 (906)
9 KOG4159 Predicted E3 ubiquitin 98.3 5.1E-07 1.1E-11 93.4 3.4 110 83-198 173-282 (398)
10 PF04046 PSP: PSP; InterPro: 21.4 39 0.00085 25.4 0.5 12 348-359 16-27 (48)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.94 E-value=2.2e-26 Score=253.29 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=153.5
Q ss_pred CceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC---CCcccccCeeEEEEEEEEE
Q 015048 82 GAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYR 158 (414)
Q Consensus 82 g~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e---p~~edly~IGTlAeI~qv~ 158 (414)
..+.+||+|||+|+|||||+++||+|+++++++||++|+.++ +.||+|++ ++.. ++.+++|.|||+|+|.++.
T Consensus 6 ~~~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~---~~~gvv~~-k~~~~~~p~~~dLy~VGtla~I~~~~ 81 (784)
T PRK10787 6 SERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQML 81 (784)
T ss_pred CCCceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcC---CEEEEEEe-cCCCCCCCCcccccCccEEEEEEEee
Confidence 344689999999999999999999999999999999999887 78999998 4432 4457899999999999999
Q ss_pred ECCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC--------ccccHHHHHHHHHhhcCCCCC--CcccccC-
Q 015048 159 RLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL--------PLRTPRDVFETLGCVSNLSQS--LSHTLPS- 227 (414)
Q Consensus 159 rlpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~--------~~r~l~e~f~e~a~ls~~~~~--~~~v~~~- 227 (414)
+++||.++|+++|++||+|.+ +.+.+||+.|+|+.+++.. +.+.+.+.|.+|+.+++.++. +..+..+
T Consensus 82 ~l~DG~~~Ilv~Gl~RfrI~~-~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~~d 160 (784)
T PRK10787 82 KLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID 160 (784)
T ss_pred ECCCCeEEEEEEEEEEEEEEE-EEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhccc
Confidence 999999999999999999998 7889999999999997643 256688899999999887765 3333333
Q ss_pred -CccccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 228 -NSSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 228 -~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
++.++|.+|+++|++.++||++||+.|+.+|...
T Consensus 161 dp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~ 195 (784)
T PRK10787 161 DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEY 195 (784)
T ss_pred cHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHH
Confidence 7889999999999999999999999999999873
No 2
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=245.77 Aligned_cols=172 Identities=23% Similarity=0.274 Sum_probs=156.6
Q ss_pred eEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCC---CCCcccccCeeEEEEEEEEEECCC
Q 015048 86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREP---DNGRITFATIGTTAEIRQYRRLED 162 (414)
Q Consensus 86 ~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~---ep~~edly~IGTlAeI~qv~rlpd 162 (414)
+||++|+|++||||+|++||.|+|+++++|++.||.++. +.|++++| ++. +|..+++|.+||+|+|.|+.++||
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~--k~i~l~~q-k~~~~d~p~~~dly~vGt~a~I~q~~~lpd 85 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQ--KYILLVTQ-KDASTDEPTEDDLYEVGTLAKILQILKLPD 85 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCC--CEEEEEEe-cccccCCCChhhhhhcchheeeeeeeeCCC
Confidence 799999999999999999999999999999999999852 68999999 543 267789999999999999999999
Q ss_pred CcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC---------ccccHHHHHHHHHhhcCCCCC--CcccccC--Cc
Q 015048 163 GSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL---------PLRTPRDVFETLGCVSNLSQS--LSHTLPS--NS 229 (414)
Q Consensus 163 G~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~---------~~r~l~e~f~e~a~ls~~~~~--~~~v~~~--~~ 229 (414)
|+++|+|+|++|++|.+ +...++++.|+++.+++.. +.+.+.+.|++|++++++++. +..+..+ ++
T Consensus 86 g~~kvlveg~~R~~I~~-~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~~~~ 164 (782)
T COG0466 86 GTVKVLVEGLQRVRISK-LSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPG 164 (782)
T ss_pred CcEEEEEEeeeeEEEEe-eccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccchH
Confidence 99999999999999998 8999999999999997654 378899999999999998776 6666665 99
Q ss_pred cccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 230 SSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 230 ~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
+++|.+|+|++++.+++|++||++|+.+|...
T Consensus 165 klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek 196 (782)
T COG0466 165 KLADTIAAHLPLKLEEKQEILETLDVKERLEK 196 (782)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999874
No 3
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=99.92 E-value=8.5e-26 Score=223.57 Aligned_cols=261 Identities=21% Similarity=0.210 Sum_probs=176.3
Q ss_pred CCCCCCcccCccccccccccCC-CcccccccccccCCceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCC
Q 015048 47 ADSSNQLTFDTCLASLHTYLGD-VEDTHNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDV 125 (414)
Q Consensus 47 ~~~~~~~~fd~sLp~~H~YLG~-~ed~~gr~~~le~g~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~ 125 (414)
.+..++.+|||+||..|.|||+ .|+..++ +++++|.+..+|++++.++|+|||++||+.+..|+..++++.....+ +
T Consensus 26 q~l~de~~~n~al~d~~~~~ged~ee~~~~-~~ldd~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~a-r 103 (371)
T KOG1400|consen 26 QALEDENVFNTALPDYHLYLGEDREEYENE-ARLDDDTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSA-R 103 (371)
T ss_pred ccccchhcccccCcccccccccchhhhhce-eeecCCceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhh-c
Confidence 3344588999999999999996 6667766 99999999999999999999999999999999997666666555441 1
Q ss_pred CeEEEEEeeecCCCCCcccccCeeEEEEEEEEEECCC--C--cEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCCcc
Q 015048 126 PYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLED--G--SLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPL 201 (414)
Q Consensus 126 ~~~IgLv~q~kd~ep~~edly~IGTlAeI~qv~rlpd--G--~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~~~ 201 (414)
...|.+.+. . .-.+....-+|+++|.+...-.| | ..+|+..|++|+++++..++..|.-.|+|+.+|+...-
T Consensus 104 ~~~F~vl~r-~---~v~~re~~r~tt~evd~~R~p~d~Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~ 179 (371)
T KOG1400|consen 104 DNGFVVLFR-S---DVPERESLRYTTTEVDAYRVPQDNFGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIP 179 (371)
T ss_pred CCceEEEec-c---cchHHhhccccceeccccccchhhhhhhhhhhhhhcccccceeeecccCCCcccceEEeccccccc
Confidence 145666554 1 11234455688888875332222 3 35677789999999995577888889999988743210
Q ss_pred ccHHHHHHHHHhhcCCCCCCcccccCCccccccccccCCCCCccchhhcccCCHHhhhhhhcccccccccCccCCCCCCC
Q 015048 202 RTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSEESFESELSPTERRIHQSVIDFAYGCDIMDESTSSD 281 (414)
Q Consensus 202 r~l~e~f~e~a~ls~~~~~~~~v~~~~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~~~~~~~~~~~~~~~~~~s~~ 281 (414)
.+. +++ +..+..|.+++.-|+-
T Consensus 180 -----------~~~------~Sf------------------------------~~~~avq~~~~n~~~i----------- 201 (371)
T KOG1400|consen 180 -----------CLL------PSF------------------------------IPKSAVQLPAHNKCSI----------- 201 (371)
T ss_pred -----------ccc------ccc------------------------------cchhhheecccCccee-----------
Confidence 000 110 0011111111110000
Q ss_pred cccccccccccccCCCCCCCCCCCCCcccCccccccccCcccccccccCcccchhhhh-hcccccccCCCCCchhhHhhc
Q 015048 282 DDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRGEGSKMCWRN-ELSQFRRTSRAFLPHWVYRMY 360 (414)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~WP~Wvy~my 360 (414)
-+|.+. .+.+... .-...+..|.+ ..+.++++++.+||.|+|.||
T Consensus 202 -------------a~~~n~-------------------~p~s~e~--dm~sla~f~~i~sls~~h~~~ll~~~~was~ty 247 (371)
T KOG1400|consen 202 -------------ATRING-------------------YPFSAER--DMTSLAVFRQIGSLSGFHGDDLLSWPKWASLTY 247 (371)
T ss_pred -------------ccCCCC-------------------Ccccccc--chhhhhhheehhhhhhhcccccccccccchHHH
Confidence 000000 0000000 11123334555 778899999999999999999
Q ss_pred ChHHHHHHHHhhc-----------cccCccchHHHHhhhcchhhhcccceeeeeee
Q 015048 361 DSYCLAQRAAVKY-----------LSLNLLDKSFWRLMVFHIDCAVKLNYLRVLIL 405 (414)
Q Consensus 361 D~y~La~raa~~~-----------~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~i~ 405 (414)
|||.||.||.+.. +|.+|+++|||.+.++|++.+.+-.||-.++.
T Consensus 248 qSy~la~rivenarl~yE~lk~ds~~~kpivlSf~~a~kihv~e~~~~hL~~~g~v 303 (371)
T KOG1400|consen 248 QSYFLAKRIVENARLWYELLKEDSAPGKPIVLSFKYAWKIHVCERCREHLLWEGSV 303 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCceEeehhhhhhhhhhHHHHHHHHhhccc
Confidence 9999999999832 89999999999999999998888888766543
No 4
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.91 E-value=3.2e-24 Score=195.90 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=120.4
Q ss_pred eEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEee-ecCCC---CCcccccCeeEEEEEEEEEECC
Q 015048 86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRV-FREPD---NGRITFATIGTTAEIRQYRRLE 161 (414)
Q Consensus 86 ~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q-~kd~e---p~~edly~IGTlAeI~qv~rlp 161 (414)
+||+||+++.|+|||+++||.|+++++++|+++++.++. ..||+++. ..... ++.+++|.|||+|+|.++.+++
T Consensus 1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~ 78 (205)
T PF02190_consen 1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNN--PYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELP 78 (205)
T ss_dssp EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTS--E-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEEST
T ss_pred CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCC--CceeEEeecccCCcccCCcccccccceEEEEEEEEEecC
Confidence 589999999999999999999999999999999998762 25888776 22111 5568899999999999999999
Q ss_pred CCcEEEEEEEeEEEEEeeEe---ecCCCcceEEEEEecC--CCc----cccHHHHHHH----HH---hhcCCC-CC--Cc
Q 015048 162 DGSLNVVTRGQQRFRLRRRW---IDVEGVPCGEIQIIQE--DLP----LRTPRDVFET----LG---CVSNLS-QS--LS 222 (414)
Q Consensus 162 dG~lrVlVeGlqRfrI~~~~---~q~dpyl~AeVeiL~E--~~~----~r~l~e~f~e----~a---~ls~~~-~~--~~ 222 (414)
+|++.|+++|++||+|.+ + .+.+||+.|+|+++++ ... ...+...+.+ +. ...+.. +. ..
T Consensus 79 dg~~~v~~~g~~R~ki~~-~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (205)
T PF02190_consen 79 DGTYKVLVQGLQRFKILK-INNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLPWDLLL 157 (205)
T ss_dssp TS-EEEEEEEEEEEEEEE-EEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHH
T ss_pred CCCEEEEEEEEEEEEEEE-EecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhh
Confidence 999999999999999998 7 5699999999999976 221 1122222222 21 222232 22 12
Q ss_pred ccccC--CccccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 223 HTLPS--NSSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 223 ~v~~~--~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
.+... +..++|.+|+.+|++.++||++|++.|+.+|...
T Consensus 158 ~~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~ 198 (205)
T PF02190_consen 158 KINNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKL 198 (205)
T ss_dssp HTTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHH
Confidence 22222 5669999999999999999999999999999875
No 5
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.91 E-value=2.3e-24 Score=237.32 Aligned_cols=168 Identities=19% Similarity=0.206 Sum_probs=144.9
Q ss_pred EEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEE-EEeeecCCC---CCcccccCeeEEEEEEEEEECCC-
Q 015048 88 PLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIG-VVRVFREPD---NGRITFATIGTTAEIRQYRRLED- 162 (414)
Q Consensus 88 PLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~Ig-Lv~q~kd~e---p~~edly~IGTlAeI~qv~rlpd- 162 (414)
|+|||+++|||||+++||+|++++|++||++|+.++ +.|+ ++++ ++.+ ++.+++|.|||+|+|.++.+++|
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~---~~~~~vv~~-k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~ 76 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLK---QPYLGLFLQ-KDDDNEEPEEDDIYSVGVVAQILEMLPLPSS 76 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcC---CcEEEEEEe-cCcccCCCCcccccCCceEEEEEEeccCCCC
Confidence 899999999999999999999999999999999876 5677 6666 5443 45678999999999999999555
Q ss_pred --CcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC----------ccccHHHHHHHHHhhcC--CCCC--Cccccc
Q 015048 163 --GSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL----------PLRTPRDVFETLGCVSN--LSQS--LSHTLP 226 (414)
Q Consensus 163 --G~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~----------~~r~l~e~f~e~a~ls~--~~~~--~~~v~~ 226 (414)
|.++|+|+|.+||+|.+ +.+++||+.|+|+.++++. +.+.+.+.|++|+.+++ ..+. +..+..
T Consensus 77 ~dG~~~Ilv~G~~R~rI~~-~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~ 155 (775)
T TIGR00763 77 GTATYKVVVEGLRRIRIKE-LSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALED 155 (775)
T ss_pred CCCeEEEEEEEEEEEEEEE-EecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhc
Confidence 99999999999999998 8999999999999997532 25778888999999888 4443 333333
Q ss_pred C--CccccccccccCCCC-CccchhhcccCCHHhhhh
Q 015048 227 S--NSSSRGYGIRDNDSD-ATSEESFESELSPTERRI 260 (414)
Q Consensus 227 ~--~~~l~D~ias~l~l~-~~~kQ~iLe~~d~~eR~~ 260 (414)
+ ++.++|.+|+++|++ .++||++||+.|+.+|..
T Consensus 156 ~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~ 192 (775)
T TIGR00763 156 IDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLK 192 (775)
T ss_pred cCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHH
Confidence 3 789999999999999 999999999999999987
No 6
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.82 E-value=1e-19 Score=172.42 Aligned_cols=176 Identities=21% Similarity=0.248 Sum_probs=136.7
Q ss_pred CceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC---CCcccccCeeEEEEEEEEE
Q 015048 82 GAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYR 158 (414)
Q Consensus 82 g~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e---p~~edly~IGTlAeI~qv~ 158 (414)
..+..||||||++.|+|||..+|++|++++|..|++.|++++ +.||+|...++.+ +....+..|||+|+|.++.
T Consensus 7 ~~p~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~---r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~ 83 (221)
T COG2802 7 DLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEG---RRFGVVLIDRGREVGGGLPPELSDVGCLARITEFE 83 (221)
T ss_pred CccceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcC---CceeEEEecccccccCCCcchhhccceeEEEeEee
Confidence 446789999999999999999999999999999999999976 8999998744332 2345788999999999999
Q ss_pred ECCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCCcccc------------HHHHHHHHHhhcCCCCCCccccc
Q 015048 159 RLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRT------------PRDVFETLGCVSNLSQSLSHTLP 226 (414)
Q Consensus 159 rlpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~~~r~------------l~e~f~e~a~ls~~~~~~~~v~~ 226 (414)
.++||.+.|.++|.+||||.+...+.+||..|.++.++|...... +...+..|...............
T Consensus 84 ~~~DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~a~evdr~~~~~l~~~~r~~~~~~~l~~d~~~~~~ 163 (221)
T COG2802 84 ELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDGAEEVDRRLDALLMRAARAYLQRLELLADWESYER 163 (221)
T ss_pred EcCCCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcchHHHHHHHHHHHHHHHHHHHhhhcchhhhhccccc
Confidence 999999999999999999999555699999999999877652111 22223333332222211222211
Q ss_pred C-CccccccccccCCCCCccchhhcccCCHHhhhh
Q 015048 227 S-NSSSRGYGIRDNDSDATSEESFESELSPTERRI 260 (414)
Q Consensus 227 ~-~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~ 260 (414)
- +.-++.-++.-+|++...||.+++..+...|..
T Consensus 164 ~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~ 198 (221)
T COG2802 164 ASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAE 198 (221)
T ss_pred ccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHH
Confidence 2 455667788889999999999999999998876
No 7
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.91 E-value=2.7e-09 Score=88.04 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=71.0
Q ss_pred EEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCCCCcccccCeeEEEEEEEEEECCCCcEE
Q 015048 87 LPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLEDGSLN 166 (414)
Q Consensus 87 LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~ep~~edly~IGTlAeI~qv~rlpdG~lr 166 (414)
+|++|+++.|+|||++.|+.++++++++++++++.++. ...++++.+ ++.+. +
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~-~~~i~~~~~-~~~~~---~---------------------- 54 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQ-PYVIVFLLQ-DDPTE---T---------------------- 54 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCC-CeEEEEEEc-cCCCC---C----------------------
Confidence 79999999999999999999999999999999998762 115666665 32211 1
Q ss_pred EEEEEeEEEEEeeEeecCCCcceEEEEEecCCCccccHHHHHHHHHhhcCCCCCCcccccCCccccccccccCCCCCccc
Q 015048 167 VVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDLPLRTPRDVFETLGCVSNLSQSLSHTLPSNSSSRGYGIRDNDSDATSE 246 (414)
Q Consensus 167 VlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~~~r~l~e~f~e~a~ls~~~~~~~~v~~~~~~l~D~ias~l~l~~~~k 246 (414)
+..+++.+|++++++..++
T Consensus 55 -------------------------------------------------------------~~~~~~~~a~~~~~~~~~~ 73 (92)
T smart00464 55 -------------------------------------------------------------PEPLSDTIAALMPLELHEK 73 (92)
T ss_pred -------------------------------------------------------------chhhhHHHhhcccccHHHH
Confidence 2346788999999999999
Q ss_pred hhhcccCCHHhhhhh
Q 015048 247 ESFESELSPTERRIH 261 (414)
Q Consensus 247 Q~iLe~~d~~eR~~~ 261 (414)
|++||+.|+.+|...
T Consensus 74 q~lL~~~~~~~Rl~~ 88 (92)
T smart00464 74 QELLELEGTNKRLEK 88 (92)
T ss_pred HHHHhcccHHHHHHH
Confidence 999999999998753
No 8
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.4e-07 Score=102.58 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=124.7
Q ss_pred CCceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCC-CC-----Cccc----------
Q 015048 81 GGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREP-DN-----GRIT---------- 144 (414)
Q Consensus 81 ~g~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~-ep-----~~ed---------- 144 (414)
+..+.+||++|++.-+||||..+++.|..++.+++|++-+.... .++|++.. +|. +. ...+
T Consensus 63 ~~~~~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~q--pyiG~fl~-kdd~~~~~~~t~~~~vyi~~~~~~~ 139 (906)
T KOG2004|consen 63 PDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQ--PYIGAFLL-KDDSSGDSVITSINEVYILEVFPGK 139 (906)
T ss_pred cccCcccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcC--cccceeee-ccCCCCCcceeeccccceeeeecCC
Confidence 34456899999999999999999999999999999999887652 58998887 443 21 0000
Q ss_pred ------c--cCeeEEEEEEEEE---ECCCCcEEEEEEEeEEEEEeeEeecCC--CcceEEEEEecCCC---------ccc
Q 015048 145 ------F--ATIGTTAEIRQYR---RLEDGSLNVVTRGQQRFRLRRRWIDVE--GVPCGEIQIIQEDL---------PLR 202 (414)
Q Consensus 145 ------l--y~IGTlAeI~qv~---rlpdG~lrVlVeGlqRfrI~~~~~q~d--pyl~AeVeiL~E~~---------~~r 202 (414)
+ ++.+.+++..++. +...+.+.+.+.|..|++|.+ ...+. +.+..+|+.+.+.. ...
T Consensus 140 ~~~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e-~~~e~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ 218 (906)
T KOG2004|consen 140 DKLRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITE-MKEEKEAEVLSVEVENVKDEPFKKDEEIKALTS 218 (906)
T ss_pred cchhhhhhhhhheeeeeeccccccccccccceeecccccccccchh-hhccccCCceeeeeecccCCccCcchHHHHHHH
Confidence 1 3334444333322 223456888999999999998 44432 55777777776443 134
Q ss_pred cHHHHHHHHHhhcCCCCC-C---cccccC--CccccccccccCCCCCccchhhcccCCHHhhhh
Q 015048 203 TPRDVFETLGCVSNLSQS-L---SHTLPS--NSSSRGYGIRDNDSDATSEESFESELSPTERRI 260 (414)
Q Consensus 203 ~l~e~f~e~a~ls~~~~~-~---~~v~~~--~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~ 260 (414)
.+...+.+++++++..-+ + .+.... +.+|+|+.|+-.-.+..+.|++|+++|+.+|..
T Consensus 219 ei~~t~rdii~~n~l~r~~v~~~~~~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~ 282 (906)
T KOG2004|consen 219 EILKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLE 282 (906)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHH
Confidence 455566677777766544 2 222222 899999999999999999999999999999975
No 9
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.1e-07 Score=93.44 Aligned_cols=110 Identities=28% Similarity=0.483 Sum_probs=94.1
Q ss_pred ceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCCCCcccccCeeEEEEEEEEEECCC
Q 015048 83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRITFATIGTTAEIRQYRRLED 162 (414)
Q Consensus 83 ~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~ep~~edly~IGTlAeI~qv~rlpd 162 (414)
.....|+|++ .+..||++..|++++++++..|+++++..++ ..+|++.. +...+....+.||++.+|.++..+.|
T Consensus 173 ~e~~~p~f~v-~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~--~rf~i~~s--d~~~~~~~~~e~g~i~ei~~v~~l~d 247 (398)
T KOG4159|consen 173 RECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGD--KRFGICLS--DSSKGSGQAAEIGCILEIRKVESLGD 247 (398)
T ss_pred ccccCCcccc-cccccccccCcHHHccchHHHHHHHHHhhcc--eeeeeecc--cccCCcchhhhccchhhhcccccccc
Confidence 3456899996 4999999999999999999999999998753 68998764 22222123678999999999999999
Q ss_pred CcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCC
Q 015048 163 GSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED 198 (414)
Q Consensus 163 G~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~ 198 (414)
|...+...|..||++.. +.+.++|..|.|+.+++.
T Consensus 248 grsv~~~~gk~r~r~~~-~~~~d~y~~~~ve~l~d~ 282 (398)
T KOG4159|consen 248 GRSVVDSIGKSRFRVLL-FSQTDGYPVADVEYLEDR 282 (398)
T ss_pred cchhhhhhcCcceeeee-ecCCCcceeeeeeeeeCc
Confidence 99999999999999998 899999999999999884
No 10
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=21.38 E-value=39 Score=25.43 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=9.1
Q ss_pred CCCCCchhhHhh
Q 015048 348 SRAFLPHWVYRM 359 (414)
Q Consensus 348 ~~s~WP~Wvy~m 359 (414)
+-..=|.|+|+|
T Consensus 16 ~~~~~PPwl~~M 27 (48)
T PF04046_consen 16 QENDPPPWLYRM 27 (48)
T ss_pred CCCCCChHHHHH
Confidence 334579999998
Done!