Query 015048
Match_columns 414
No_of_seqs 268 out of 1224
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 2.4E-34 8.1E-39 267.8 12.9 174 83-261 5-193 (209)
2 3ljc_A ATP-dependent protease 100.0 3.6E-33 1.2E-37 267.5 10.3 173 84-261 15-202 (252)
3 1zbo_A Hypothetical protein BP 100.0 5.2E-32 1.8E-36 252.2 15.7 168 85-261 2-191 (210)
4 2ane_A ATP-dependent protease 99.9 6.9E-26 2.3E-30 196.8 17.0 112 80-196 11-125 (125)
5 4aqz_A PILQ, type IV pilus bio 14.5 2.8E+02 0.0097 23.8 5.7 52 143-196 86-137 (138)
6 3kmh_A D-lyxose isomerase; cup 11.6 1.3E+02 0.0044 28.6 2.8 16 95-110 111-126 (246)
7 2l05_A Serine/threonine-protei 10.3 94 0.0032 25.5 1.2 17 16-32 76-92 (95)
8 2lw9_A Unconventionnal myosin- 10.3 75 0.0026 23.0 0.6 12 12-23 3-14 (51)
9 2ddz_A 190AA long hypothetical 8.3 93 0.0032 28.5 0.5 10 353-362 23-32 (190)
10 1rrb_A RAF-1 RBD, RAF proto-on 8.0 1.1E+02 0.0039 25.5 0.9 17 16-32 80-96 (107)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-34 Score=267.80 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=155.2
Q ss_pred ceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC---CCcccccCeeEEEEEEEEEE
Q 015048 83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR 159 (414)
Q Consensus 83 ~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e---p~~edly~IGTlAeI~qv~r 159 (414)
.+.+||+|||+|+|+|||+++||+|++++|++||++||+++ +.||+++| ++.+ ++.+++|.|||+|+|.++.+
T Consensus 5 ~~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~i~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~ 80 (209)
T 3m65_A 5 LKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD---HMIFLATQ-QDISIDEPGEDEIFTVGTYTKIKQMLK 80 (209)
T ss_dssp EEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT---SEEEEEEB-SSTTCSSCCGGGBCSEEEEEEEEEEEE
T ss_pred CCCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCcchhhheeEEEEEEEEEE
Confidence 34689999999999999999999999999999999999987 78999998 6543 55689999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC--------ccccHHHHHHHHHhhcCCCCC--CcccccC--
Q 015048 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL--------PLRTPRDVFETLGCVSNLSQS--LSHTLPS-- 227 (414)
Q Consensus 160 lpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~--------~~r~l~e~f~e~a~ls~~~~~--~~~v~~~-- 227 (414)
+|||+++|+++|.+||+|.+ +.+.+||+.|+|+.+++.. +.+.+++.|++|+++++.++. ...+..+
T Consensus 81 l~dG~~~v~v~G~~R~ri~~-~~~~~~~~~a~v~~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~d 159 (209)
T 3m65_A 81 LPNGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIEE 159 (209)
T ss_dssp CTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCC
Confidence 99999999999999999998 8889999999999997753 367789999999999887765 3344444
Q ss_pred CccccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 228 NSSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 228 ~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
++.++|.+|+++|++.++||++||+.|+.+|...
T Consensus 160 p~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~ 193 (209)
T 3m65_A 160 PGRMADIVASHLPLKLKDKQDILETADVKDRLNK 193 (209)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999999999999999999999874
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.98 E-value=3.6e-33 Score=267.45 Aligned_cols=173 Identities=22% Similarity=0.225 Sum_probs=155.0
Q ss_pred eeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC---CCcccccCeeEEEEEEEEEEC
Q 015048 84 ILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRRL 160 (414)
Q Consensus 84 ~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e---p~~edly~IGTlAeI~qv~rl 160 (414)
+.+||+|||+|+|||||+++||+|++++|++||++||+++ +.||+|+| ++++ |+.+++|.|||+|+|.++.++
T Consensus 15 ~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~---~~~~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~l 90 (252)
T 3ljc_A 15 RIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLKL 90 (252)
T ss_dssp CCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTT---TEEEEEEB-CSSCCSSCCSSSBCSEEEEEEECCCBCC
T ss_pred CCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCccchhheeEEEEEEEEEEC
Confidence 3479999999999999999999999999999999999987 78999998 5543 556899999999999999999
Q ss_pred CCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC--------ccccHHHHHHHHHhhcCCCCC--CcccccC--C
Q 015048 161 EDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL--------PLRTPRDVFETLGCVSNLSQS--LSHTLPS--N 228 (414)
Q Consensus 161 pdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~--------~~r~l~e~f~e~a~ls~~~~~--~~~v~~~--~ 228 (414)
|||+++|+|+|.+||+|.+ +.+.+||+.|+|+.+++.. +++.+++.|.+|+.+++.++. ...+..+ +
T Consensus 91 pdG~~~v~v~G~~R~rI~~-~~~~~~~~~a~ve~l~d~~~~~~e~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~~~dp 169 (252)
T 3ljc_A 91 PDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDP 169 (252)
T ss_dssp TTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTSCCCH
T ss_pred CCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEeecCCCCCChHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccCCH
Confidence 9999999999999999998 8889999999999997753 367789999999999998876 3344444 8
Q ss_pred ccccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 229 SSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 229 ~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
+.++|.+|+++|++.++||++||+.|+.+|...
T Consensus 170 ~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~ 202 (252)
T 3ljc_A 170 ARLADTIAAHMPLKLADKQSVLEMSDVNERLEY 202 (252)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999874
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.98 E-value=5.2e-32 Score=252.19 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=146.8
Q ss_pred eeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC----C-CcccccCeeEEEEEEEEEE
Q 015048 85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----N-GRITFATIGTTAEIRQYRR 159 (414)
Q Consensus 85 ~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e----p-~~edly~IGTlAeI~qv~r 159 (414)
.+||+||| |+|+|||+++||+|++++|++||++||+++ +.||+|++ ++.. + ..+++|.|||+|+|.++.+
T Consensus 2 ~~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~~glv~~-~~~~~~~~~~~~~dl~~vGt~a~I~~~~~ 76 (210)
T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVL-EQGTEVRRPDGREVLARAGTMARIDHWEA 76 (210)
T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEE-SSSCSSCCSSCCCCEEEEEEEEEEEEEEC
T ss_pred cEeeEEec-CeeecCCCceeeEECCHHHHHHHHHHHhcC---CcEEEEEe-CCCcccCcccccCchhceEEEEEEEEEEe
Confidence 46999999 999999999999999999999999999986 78999998 4432 2 2478999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEecCCC----------ccccHHHHHHHHHhhc-----CCCCCCccc
Q 015048 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQEDL----------PLRTPRDVFETLGCVS-----NLSQSLSHT 224 (414)
Q Consensus 160 lpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~E~~----------~~r~l~e~f~e~a~ls-----~~~~~~~~v 224 (414)
+|||+++|+++|.+||+|.+.+.+.+||+.|+|+.+++.. +++.+++.|.+|++++ +.++. +
T Consensus 77 lpdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~~---~ 153 (210)
T 1zbo_A 77 PMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAA---P 153 (210)
T ss_dssp SSTTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCS---C
T ss_pred CCCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCCC---c
Confidence 9999999999999999996547889999999999997642 2678899999999988 33332 3
Q ss_pred ccC--CccccccccccCCCCCccchhhcccCCHHhhhhh
Q 015048 225 LPS--NSSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (414)
Q Consensus 225 ~~~--~~~l~D~ias~l~l~~~~kQ~iLe~~d~~eR~~~ 261 (414)
..+ ++.++|.+|+++|++.++||++||+ |+.+|...
T Consensus 154 ~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~ 191 (210)
T 1zbo_A 154 FRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLRE 191 (210)
T ss_dssp CCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHH
Confidence 333 8999999999999999999999999 99999874
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.94 E-value=6.9e-26 Score=196.80 Aligned_cols=112 Identities=28% Similarity=0.391 Sum_probs=99.3
Q ss_pred cCCceeeEEEEeeCCceecCCCceeEEecChhHHHHHHHHHhcCCCCeEEEEEeeecCCC---CCcccccCeeEEEEEEE
Q 015048 80 EGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQ 156 (414)
Q Consensus 80 e~g~~~~LPLlPLrg~VLFPG~vlpL~V~rprsi~aVe~Am~~d~~~~~IgLv~q~kd~e---p~~edly~IGTlAeI~q 156 (414)
+.+.+.+||+|||+|+|||||+++||+|+++++++||++|++++ +.||+++| ++.+ ++.+++|.|||+|+|.+
T Consensus 11 ~~~~p~~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~---~~i~lv~~-k~~~~~~p~~~dl~~vGt~a~I~~ 86 (125)
T 2ane_A 11 ERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQ 86 (125)
T ss_dssp ----CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTT---SEEEEEEB-CTTCCSSCCGGGBCSEEEEEEEEE
T ss_pred ccCCCCeEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCccCCCccchhccEEEEEEEE
Confidence 45556789999999999999999999999999999999999876 78999998 5532 45689999999999999
Q ss_pred EEECCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEec
Q 015048 157 YRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ 196 (414)
Q Consensus 157 v~rlpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~ 196 (414)
+.+++||+++|+++|++||+|.+ +.+.+||+.|+|+.++
T Consensus 87 ~~~lpdG~~~ilv~G~~R~rI~~-~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 87 MLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC-
T ss_pred EeeCCCCcEEEEEEEEEEEEEEE-EEcCCCcEEEEEEECC
Confidence 99999999999999999999998 8999999999999874
No 5
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=14.46 E-value=2.8e+02 Score=23.81 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=38.2
Q ss_pred ccccCeeEEEEEEEEEECCCCcEEEEEEEeEEEEEeeEeecCCCcceEEEEEec
Q 015048 143 ITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ 196 (414)
Q Consensus 143 edly~IGTlAeI~qv~rlpdG~lrVlVeGlqRfrI~~~~~q~dpyl~AeVeiL~ 196 (414)
-|.-.+||.++-....+..++ .+++++-...+.-.. +.+.+..+..+|.+..
T Consensus 86 lDV~DFaTPV~~I~~~~~g~~-trl~I~~~G~~ey~~-~yQ~d~~~~veV~P~~ 137 (138)
T 4aqz_A 86 LDVADFKTPVQKVTLKRLNND-TQLIITTAGNWELVN-KSAAPGYFTFQVLPKK 137 (138)
T ss_dssp ECCTTSSSSEEEEEEEECSSS-EEEEEEECSSEEEEE-EEEETTEEEEEEEECC
T ss_pred eeccccCCCceEEEEEEcCCC-EEEEEEeCCceeEEe-eEeeCCEEEEEEEeCC
Confidence 466778998887777766544 667777666687665 5788888988888764
No 6
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=11.64 E-value=1.3e+02 Score=28.62 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=14.7
Q ss_pred ceecCCCceeEEecCh
Q 015048 95 VVLFPEATLPLRVIKP 110 (414)
Q Consensus 95 ~VLFPG~vlpL~V~rp 110 (414)
++++||++.|++....
T Consensus 111 Li~~~gQ~~P~H~H~~ 126 (246)
T 3kmh_A 111 MHVRDAQVTPMHFHWR 126 (246)
T ss_dssp EEECBTCEEEEEEESS
T ss_pred eeccCCCCCCcccCCC
Confidence 7899999999999885
No 7
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=10.33 E-value=94 Score=25.47 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=14.2
Q ss_pred HHhhcccccceeEEecC
Q 015048 16 QIRQLDFEELQVEEVDD 32 (414)
Q Consensus 16 ~i~~l~~eel~~e~~~~ 32 (414)
.|..|.-|||+||..|+
T Consensus 76 Di~~L~~eEL~Ve~ld~ 92 (95)
T 2l05_A 76 DISWLTGEELHVEVLEN 92 (95)
T ss_dssp BGGGGTTCEEEEEESCC
T ss_pred hhhhccCcEEEEEEecC
Confidence 35678999999999884
No 8
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=10.26 E-value=75 Score=23.05 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=9.0
Q ss_pred HHHHHHhhcccc
Q 015048 12 QQIEQIRQLDFE 23 (414)
Q Consensus 12 ~~~~~i~~l~~e 23 (414)
+|||+|+.|+.|
T Consensus 3 rQ~EEILRLErE 14 (51)
T 2lw9_A 3 KQVEEILRLEKE 14 (51)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 688888887654
No 9
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=8.31 E-value=93 Score=28.48 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=8.6
Q ss_pred chhhHhhcCh
Q 015048 353 PHWVYRMYDS 362 (414)
Q Consensus 353 P~Wvy~myD~ 362 (414)
|+|+|++|+-
T Consensus 23 slWA~~~fgi 32 (190)
T 2ddz_A 23 SHWAYRNFGI 32 (190)
T ss_dssp TTHHHHHHCC
T ss_pred HHHHHHhcCC
Confidence 8999999863
No 10
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=7.96 E-value=1.1e+02 Score=25.48 Aligned_cols=17 Identities=35% Similarity=0.180 Sum_probs=13.0
Q ss_pred HHhhcccccceeEEecC
Q 015048 16 QIRQLDFEELQVEEVDD 32 (414)
Q Consensus 16 ~i~~l~~eel~~e~~~~ 32 (414)
.|..|.-|||+||..|+
T Consensus 80 Di~~L~geEL~Ve~ld~ 96 (107)
T 1rrb_A 80 DAASLIGEELQVDFLKL 96 (107)
T ss_dssp BHHHHTTSEEEEEEC--
T ss_pred hhhhccCcEEEEEEccc
Confidence 45679999999999984
Done!