BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015049
(414 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356538244|ref|XP_003537614.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 565
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/413 (79%), Positives = 371/413 (89%), Gaps = 1/413 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M DV +DY CAVIDEIQM+GC TRG+SFTRALLGI A+ELHLCGDPAAVPLIQ+I+++TG
Sbjct: 148 MVDVSADYQCAVIDEIQMIGCITRGYSFTRALLGIAADELHLCGDPAAVPLIQEIMKITG 207
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+++VQ YERLSPLVPL VPLGSFSN++ GDCIVTFSR IY+LKK IE GKHLCS+VY
Sbjct: 208 DEIEVQFYERLSPLVPLKVPLGSFSNVRNGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVY 267
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQA+ FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG E+RDLTV
Sbjct: 268 GSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEVRDLTV 327
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGS FPVGEVTC+D EDLPLLH SL PSP+LE AG+ P FDL+YMYS
Sbjct: 328 PEIKQIAGRAGRYGSNFPVGEVTCMDEEDLPLLHSSLNSPSPILERAGILPTFDLMYMYS 387
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP + Y IL HFL+NAKLSENYF NCE++LKVA VID+LPL LHEKYLFCISP DM
Sbjct: 388 RLHPRNGFYQILAHFLDNAKLSENYFIVNCEQLLKVAAVIDELPLGLHEKYLFCISPADM 447
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+D+ISSQGL QFA NY+KKG+V+LREIFTPG+L+VPKT AAL+ELESIHKVLDLYVWLSF
Sbjct: 448 DDEISSQGLAQFAENYAKKGLVRLREIFTPGSLKVPKTPAALKELESIHKVLDLYVWLSF 507
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSR 413
RLEESFPD ELAASQKAICSMLIEEFLERLGWQKP +++ P K++S+++S+
Sbjct: 508 RLEESFPDHELAASQKAICSMLIEEFLERLGWQKPMARRL-PSHKMSSSLLSQ 559
>gi|224111126|ref|XP_002315757.1| predicted protein [Populus trichocarpa]
gi|222864797|gb|EEF01928.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/404 (80%), Positives = 360/404 (89%), Gaps = 1/404 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV S+Y CAV+DEIQMLGC TRGFSFTRALLGI A+ELHLCGDPAAVPLIQ+IL+ TG
Sbjct: 153 MADVTSNYSCAVVDEIQMLGCMTRGFSFTRALLGISADELHLCGDPAAVPLIQEILKPTG 212
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD+ VQ YERLSPLVP PLGSF NIQTGDCIVTFSR IY+LK IE KHLCS+VY
Sbjct: 213 DDIHVQYYERLSPLVPSQKPLGSFKNIQTGDCIVTFSRREIYKLKGQIERGRKHLCSVVY 272
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQAT FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE+RDLT+
Sbjct: 273 GSLPPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEMRDLTI 332
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
EVKQIAGRAGRYGS FPVGEVTCL ++DLPLLH SL PSP+LE AGLFP FDLI+MYS
Sbjct: 333 SEVKQIAGRAGRYGSDFPVGEVTCLHADDLPLLHSSLKSPSPILECAGLFPTFDLIFMYS 392
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP LY I+EHFLENAKLSENYF ANCEE+LKVA V+D LP+ LH+KYLF ISPVDM
Sbjct: 393 RLHPKKGLYRIMEHFLENAKLSENYFIANCEEMLKVAAVVDVLPISLHDKYLFVISPVDM 452
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
++ISSQGLTQFA NY++KGIV+L+EIFTPGTLQVPKT++AL+ELESIHKVLDLYVWLSF
Sbjct: 453 RNEISSQGLTQFAQNYAQKGIVRLKEIFTPGTLQVPKTESALKELESIHKVLDLYVWLSF 512
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQK-PRVKKVTPR 403
RLE+SFPDRELAASQKAIC +LIEEFLER GWQK P+ +K+ R
Sbjct: 513 RLEDSFPDRELAASQKAICGLLIEEFLERFGWQKQPKTRKLPSR 556
>gi|356495782|ref|XP_003516752.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 600
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/413 (78%), Positives = 370/413 (89%), Gaps = 1/413 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ +DY CAVIDEIQM+GC TRG+SFTRALLGI A+ELHLCGDPAAVPLIQ+IL++TG
Sbjct: 183 MADLSADYQCAVIDEIQMIGCTTRGYSFTRALLGIAADELHLCGDPAAVPLIQEILKITG 242
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+++VQ YERLSPLVPLNVPLGSFSN++ GDCIVTFSR IY+LKK IE GKHLCS+VY
Sbjct: 243 DEIEVQFYERLSPLVPLNVPLGSFSNVRNGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVY 302
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQA+ FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG E+RDL+V
Sbjct: 303 GSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEVRDLSV 362
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGS FPVGEVTC+D EDL LLH SL PSP+LE AGL P FDL+YMYS
Sbjct: 363 PEIKQIAGRAGRYGSNFPVGEVTCMDEEDLLLLHSSLNSPSPILERAGLLPTFDLMYMYS 422
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP + Y IL HFL++AKLSENYF NCE++LKVA VID+LPL LHEKYLFCISP DM
Sbjct: 423 RLHPRNGFYQILAHFLDHAKLSENYFIVNCEQLLKVAAVIDELPLGLHEKYLFCISPADM 482
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+D+ISSQGLTQFA NY+KKG+V+LREIFTPG+L+VPKT AAL+ELESIHKVLDLYVWLSF
Sbjct: 483 DDEISSQGLTQFAENYAKKGLVRLREIFTPGSLKVPKTPAALKELESIHKVLDLYVWLSF 542
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSR 413
RLEESFPD ELA SQKAICSMLIEEFLERLGWQKP +++ K++S ++S+
Sbjct: 543 RLEESFPDHELAVSQKAICSMLIEEFLERLGWQKPMARRLASH-KMSSPLLSQ 594
>gi|357480943|ref|XP_003610757.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
gi|355512092|gb|AES93715.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
Length = 570
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/408 (74%), Positives = 356/408 (87%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV +DY CAVIDEIQMLGC TRG+SFTRALLGI A+ELHLCGDPAAVPLIQ+IL +TG
Sbjct: 153 MADVSTDYKCAVIDEIQMLGCNTRGYSFTRALLGIAADELHLCGDPAAVPLIQEILDITG 212
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+++VQ YERLSPLVP+ VPL S S+++ GDCIVTFSR IY+LKK IE GKHLCS+VY
Sbjct: 213 DELEVQYYERLSPLVPMKVPLRSLSDVRNGDCIVTFSRRDIYKLKKRIEREGKHLCSVVY 272
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQA+ FNDASSEFDVLVASDAIGMGLNLNISRIIFSTM+KFDG ++RDLTV
Sbjct: 273 GSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMQKFDGFQMRDLTV 332
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGS FP+GEVTC+ +DLPLLH +L PSP+LE AGL P+++L+YMYS
Sbjct: 333 PEIKQIAGRAGRYGSNFPLGEVTCMSGDDLPLLHSALDSPSPILERAGLLPSYELLYMYS 392
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP + Y +LEHF++NAKLSE YF NC++VLKVA V+D+ PL L +KYLFCISP DM
Sbjct: 393 RLHPQAGFYQVLEHFVDNAKLSEKYFIVNCDQVLKVAAVVDEFPLELRDKYLFCISPADM 452
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+D+ISSQGLTQF NY+KKG+V+LREIFTPGTL+VP T AL++LESIHKVLDLYVWLSF
Sbjct: 453 DDEISSQGLTQFVENYAKKGLVRLREIFTPGTLKVPTTPQALKDLESIHKVLDLYVWLSF 512
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNS 408
RLE+SFPD ELA SQKA+CSMLIEEFL+R GWQKP +++ R NS
Sbjct: 513 RLEDSFPDHELAKSQKALCSMLIEEFLDRYGWQKPMARRLPLRKVSNS 560
>gi|255552101|ref|XP_002517095.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223543730|gb|EEF45258.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 547
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/408 (78%), Positives = 352/408 (86%), Gaps = 24/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV SDY CAV+DEIQM+GCKTRGFSFTRALLGI A+ELHLCGDPAAVPLIQ+IL+VTG
Sbjct: 154 MADVTSDYSCAVVDEIQMVGCKTRGFSFTRALLGISADELHLCGDPAAVPLIQEILKVTG 213
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD+K TGDCIVTFSR IYRLKK IES GKHLCS+VY
Sbjct: 214 DDIK------------------------TGDCIVTFSRREIYRLKKIIESAGKHLCSVVY 249
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQAT FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE+R LTV
Sbjct: 250 GSLPPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEMRYLTV 309
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGS +P GEVTCLD++DL LLH SL PSP LESAGLFP FDL++MYS
Sbjct: 310 PEIKQIAGRAGRYGSNYPAGEVTCLDADDLSLLHSSLESPSPALESAGLFPTFDLMFMYS 369
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP LY ILEHF+ENAKLS NYF A+CEEVLKVA VID++PL L++KYLFCISPVDM
Sbjct: 370 RLHPKKGLYQILEHFVENAKLSPNYFIADCEEVLKVAAVIDEMPLSLNDKYLFCISPVDM 429
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
ND+ISSQGLTQFA NY+KKGIV+L+EIFTPGTLQVPKTQ AL+ELES+HKVLDLYVWLS+
Sbjct: 430 NDEISSQGLTQFAENYAKKGIVRLKEIFTPGTLQVPKTQTALKELESVHKVLDLYVWLSY 489
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNS 408
RLE+SFPDRELAASQKAICS+LIEEFLERLGWQKPR K++ R K +S
Sbjct: 490 RLEDSFPDRELAASQKAICSLLIEEFLERLGWQKPRTTKLSSRNKTSS 537
>gi|449432684|ref|XP_004134129.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
gi|449504169|ref|XP_004162271.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 560
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/413 (74%), Positives = 351/413 (84%), Gaps = 6/413 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV S Y CAVIDEIQMLGCKTRG+SFTRALLG+CA+E+HLCGD A VPLIQ+IL+VTG
Sbjct: 140 MADVTSSYSCAVIDEIQMLGCKTRGYSFTRALLGLCADEIHLCGDAAVVPLIQEILKVTG 199
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD++VQ YERLSPL+PLN+PLGS+SNI+ GDCIVTFSR IY KK IE +G HLCSIVY
Sbjct: 200 DDIEVQYYERLSPLIPLNIPLGSYSNIRKGDCIVTFSRRRIYGYKKEIERQGGHLCSIVY 259
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQA FND +SEFDVLVASDAIGMGLNLNISRIIFSTM+KFDG E+R+LTV
Sbjct: 260 GSLPPETRTRQAMMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTV 319
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGSKFP+GEVTC+ +DLPLLH SL SP +E AGLFP F+L+Y+YS
Sbjct: 320 PEIKQIAGRAGRYGSKFPIGEVTCISGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYS 379
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLHP+ L ILEHF+ENAKLSENYF +CE +LKVA V+D++PL LH+KYLFCISP DM
Sbjct: 380 RLHPEHGLRQILEHFVENAKLSENYFIVDCEVMLKVAAVLDEMPLSLHDKYLFCISPADM 439
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+D+I+SQGLTQF Y+ KGIV+LREIF GTL+VP+T AAL+ELESIHKVLDLYVWLSF
Sbjct: 440 DDEITSQGLTQFVQGYANKGIVRLREIFKEGTLKVPETPAALKELESIHKVLDLYVWLSF 499
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSR 413
RLEESFPDRE A SQK+ CSMLIEEFL R G Q P R KL S + SR
Sbjct: 500 RLEESFPDRERADSQKSFCSMLIEEFLGRSGMQIP------TRRKLKSNIRSR 546
>gi|225432734|ref|XP_002279035.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 572
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/403 (77%), Positives = 357/403 (88%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV SDY CAVIDEIQMLGC+TRGFSFTRALLGI +ELHLCGD ++VPLIQ IL+VTG
Sbjct: 155 MADVTSDYHCAVIDEIQMLGCRTRGFSFTRALLGISTDELHLCGDVSSVPLIQGILKVTG 214
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD +VQ YERLSPLVPLNVPL SFS+IQTGDCIVTFSR IY+LK+ IE+ GKHLCS+VY
Sbjct: 215 DDFEVQYYERLSPLVPLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIENGGKHLCSVVY 274
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRTRQAT FNDA+SEFDVLVASDAIGMGLNLNISRIIFST+KKFDG+E RDLTV
Sbjct: 275 GSLPPETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKKFDGIEERDLTV 334
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGR+GSKFP GEVTC++ +DLPLLH SL SP+LE AGLFP FDL++M+S
Sbjct: 335 PEIKQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGLFPTFDLLFMHS 394
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
R HP SLY +LEHF++NAKLS NYF A+CEE+LKVA ++D+LPL LH+KYLF ISPVDM
Sbjct: 395 RFHPTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELPLGLHDKYLFVISPVDM 454
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
N+DISSQGL QFA Y+KKGIV+LREIFTPGTLQVPK+ +AL+ELESI++VLDLYVWLSF
Sbjct: 455 NNDISSQGLIQFAQTYAKKGIVRLREIFTPGTLQVPKSHSALKELESIYQVLDLYVWLSF 514
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
RLE+SF DRELA SQ+AICSMLIE FLER GW++P V R
Sbjct: 515 RLEDSFLDRELALSQRAICSMLIEGFLERGGWRQPMASSVPSR 557
>gi|242032983|ref|XP_002463886.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
gi|241917740|gb|EER90884.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
Length = 542
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/405 (72%), Positives = 345/405 (85%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV +DY CAVIDEIQM+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TG
Sbjct: 113 MADVTTDYQCAVIDEIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATG 172
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL PLGSFSNI+ GDC+VTFSR IY LKK IE GKHLCS+VY
Sbjct: 173 DVVTVQYYERLSPLVPLKSPLGSFSNIKAGDCLVTFSRRGIYTLKKRIEREGKHLCSVVY 232
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND +S+ DVLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV
Sbjct: 233 GSLPPETRTKQATMFNDDTSDLDVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTV 292
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTC+D+EDLPLLH SL SP++E AGLFP FDL+ +YS
Sbjct: 293 AEIKQIAGRAGRYGSKFPVGEVTCVDAEDLPLLHSSLKSASPIIERAGLFPTFDLLSLYS 352
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLH + +LE FLE AKLS +YF A+CE++LKVA ++D PL L++KYLFCISPVD+
Sbjct: 353 RLHGTDFFHPVLERFLEKAKLSPDYFIADCEDMLKVAAIVDDFPLGLYDKYLFCISPVDI 412
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
DDIS QGL QFA NY++KGIV+L+EIFTPGTLQVPKT L+ELES+HKVL+LYVWLSF
Sbjct: 413 RDDISVQGLVQFAENYARKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSF 472
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
R+++SFPDRE+AASQK+ICSMLIEE+LER GW+ +K P+
Sbjct: 473 RMDDSFPDREVAASQKSICSMLIEEYLERSGWRPQGRRKFLRGPQ 517
>gi|357115310|ref|XP_003559433.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 572
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/405 (71%), Positives = 348/405 (85%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
+ADV ++Y CAVIDEIQM+GCKTRGFSFTRALLG+C++ELH+CGDPAAVP+IQ++L+ TG
Sbjct: 145 IADVTTEYQCAVIDEIQMIGCKTRGFSFTRALLGLCSDELHVCGDPAAVPIIQRMLEPTG 204
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL LGSFSNI+ GDC+VTFSR IY+LKK IE GKHLCS+VY
Sbjct: 205 DVVTVQYYERLSPLVPLKSTLGSFSNIKEGDCMVTFSRREIYKLKKKIEMEGKHLCSVVY 264
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND +SE +VLVASDAIGMGLNLNISRIIFST++KFDGV +R+LTV
Sbjct: 265 GSLPPETRTKQATMFNDEASELNVLVASDAIGMGLNLNISRIIFSTLEKFDGVRMRELTV 324
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PE+KQIAGRAGRYGSKFPVGEVTCL +EDLPLLH SL PSP++E AGLFP FDL+ +YS
Sbjct: 325 PEIKQIAGRAGRYGSKFPVGEVTCLHAEDLPLLHSSLKLPSPIIERAGLFPTFDLLSVYS 384
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLH + ILE FLE AKLS +YF A+CE++LKVA ++D+LPL L++KY+FC+SPVD+
Sbjct: 385 RLHGTDFFHPILERFLEKAKLSPDYFIADCEDMLKVAAIVDELPLGLYDKYIFCLSPVDV 444
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
DDIS+QGL QFA NY+KKG V+L+E FT GTL+VPKT L+ELES+HKVL+LYVWL +
Sbjct: 445 RDDISTQGLIQFAGNYAKKGTVRLKERFTSGTLRVPKTHNQLKELESVHKVLELYVWLGY 504
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
R E+SFPDRELAASQK+ICSMLIEE+LER GWQ+ K+ P+
Sbjct: 505 RFEDSFPDRELAASQKSICSMLIEEYLERSGWQQQGQKRFLHSPR 549
>gi|414872750|tpg|DAA51307.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 577
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/400 (72%), Positives = 345/400 (86%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TG
Sbjct: 150 MADMTTNYQCAVIDEIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATG 209
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL PLGSFSNI+ GDC+V+FSR IY+LKK IE GKHLCS+VY
Sbjct: 210 DVVTVQYYERLSPLVPLKSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVY 269
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND +S+ +VLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV
Sbjct: 270 GSLPPETRTKQATMFNDDTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTV 329
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+ +DLPLLH SL S ++E AGLFP FDL+ +YS
Sbjct: 330 AEIKQIAGRAGRYGSKFPVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYS 389
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLH + ILE FLE AKLS +YF +CE++LKVA ++D LPL L++KYLFC+SPVD+
Sbjct: 390 RLHGTDFFHPILERFLEKAKLSPDYFITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVDV 449
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+DDIS+QGL QFA NY++KGIV+L+EIFTPGTLQVPKT L+ELES+HKVL+LYVWLSF
Sbjct: 450 SDDISAQGLVQFAENYARKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSF 509
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKV 400
R+++SFPDRE+AASQK+ICSMLIEE+LER GWQ +KV
Sbjct: 510 RMDDSFPDREVAASQKSICSMLIEEYLERFGWQPQDRRKV 549
>gi|414872749|tpg|DAA51306.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 485
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/400 (72%), Positives = 345/400 (86%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TG
Sbjct: 58 MADMTTNYQCAVIDEIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATG 117
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL PLGSFSNI+ GDC+V+FSR IY+LKK IE GKHLCS+VY
Sbjct: 118 DVVTVQYYERLSPLVPLKSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVY 177
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND +S+ +VLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV
Sbjct: 178 GSLPPETRTKQATMFNDDTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTV 237
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+ +DLPLLH SL S ++E AGLFP FDL+ +YS
Sbjct: 238 AEIKQIAGRAGRYGSKFPVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYS 297
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLH + ILE FLE AKLS +YF +CE++LKVA ++D LPL L++KYLFC+SPVD+
Sbjct: 298 RLHGTDFFHPILERFLEKAKLSPDYFITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVDV 357
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+DDIS+QGL QFA NY++KGIV+L+EIFTPGTLQVPKT L+ELES+HKVL+LYVWLSF
Sbjct: 358 SDDISAQGLVQFAENYARKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSF 417
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKV 400
R+++SFPDRE+AASQK+ICSMLIEE+LER GWQ +KV
Sbjct: 418 RMDDSFPDREVAASQKSICSMLIEEYLERFGWQPQDRRKV 457
>gi|297737084|emb|CBI26285.3| unnamed protein product [Vitis vinifera]
Length = 612
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 313/447 (70%), Positives = 357/447 (79%), Gaps = 44/447 (9%)
Query: 1 MADVVSDYDCAVIDEIQ------------------------------------------- 17
MADV SDY CAVIDEIQ
Sbjct: 151 MADVTSDYHCAVIDEIQAFRESNYWYSLLIFPVVAPSGVSHVHHVYNLLGLWFLLINYKK 210
Query: 18 -MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76
MLGC+TRGFSFTRALLGI +ELHLCGD ++VPLIQ IL+VTGDD +VQ YERLSPLVP
Sbjct: 211 AMLGCRTRGFSFTRALLGISTDELHLCGDVSSVPLIQGILKVTGDDFEVQYYERLSPLVP 270
Query: 77 LNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 136
LNVPL SFS+IQTGDCIVTFSR IY+LK+ IE+ GKHLCS+VYGSLPPETRTRQAT FN
Sbjct: 271 LNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIENGGKHLCSVVYGSLPPETRTRQATMFN 330
Query: 137 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
DA+SEFDVLVASDAIGMGLNLNISRIIFST+KKFDG+E RDLTVPE+KQIAGRAGR+GSK
Sbjct: 331 DATSEFDVLVASDAIGMGLNLNISRIIFSTLKKFDGIEERDLTVPEIKQIAGRAGRFGSK 390
Query: 197 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFL 256
FP GEVTC++ +DLPLLH SL SP+LE AGLFP FDL++M+SR HP SLY +LEHF+
Sbjct: 391 FPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGLFPTFDLLFMHSRFHPTKSLYQMLEHFV 450
Query: 257 ENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNY 316
+NAKLS NYF A+CEE+LKVA ++D+LPL LH+KYLF ISPVDMN+DISSQGL QFA Y
Sbjct: 451 DNAKLSSNYFIADCEEMLKVAAIVDELPLGLHDKYLFVISPVDMNNDISSQGLIQFAQTY 510
Query: 317 SKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQK 376
+KKGIV+LREIFTPGTLQVPK+ +AL+ELESI++VLDLYVWLSFRLE+SF DRELA SQ+
Sbjct: 511 AKKGIVRLREIFTPGTLQVPKSHSALKELESIYQVLDLYVWLSFRLEDSFLDRELALSQR 570
Query: 377 AICSMLIEEFLERLGWQKPRVKKVTPR 403
AICSMLIE FLER GW++P V R
Sbjct: 571 AICSMLIEGFLERGGWRQPMASSVPSR 597
>gi|115455299|ref|NP_001051250.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|108711051|gb|ABF98846.1| Helicase conserved C-terminal domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549721|dbj|BAF13164.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|260800457|gb|ACX50964.1| ATP-dependent RNA helicase [Oryza sativa Japonica Group]
Length = 579
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/405 (71%), Positives = 347/405 (85%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GC++RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TG
Sbjct: 152 MADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTG 211
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL LGSFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VY
Sbjct: 212 DVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVY 271
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND S +VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV
Sbjct: 272 GSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTV 331
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+S+ LPLLH +L PSP++E AGLFP FD++ +YS
Sbjct: 332 AEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYS 391
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
RLH ILE FL+ AKLS +YF A+CE++LKVA ++D+LPL L++KYLFC+SPVD+
Sbjct: 392 RLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLKVAAIVDELPLGLYDKYLFCLSPVDI 451
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
DDIS++GL QFA NY+KKGIV+L+EIFTPGTLQVPK+ L+ELESIHKVL+LYVWLSF
Sbjct: 452 RDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKSHNQLKELESIHKVLELYVWLSF 511
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
RLE+S+PDRELAASQK+ICSMLIEE+LER GWQ+ K +PK
Sbjct: 512 RLEDSYPDRELAASQKSICSMLIEEYLERSGWQQNGRKDFLQKPK 556
>gi|30682998|ref|NP_193215.2| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
gi|5823579|emb|CAB53782.1| mitochondrial RNA helicase [Arabidopsis thaliana]
gi|22655093|gb|AAM98137.1| RNA helicase like protein [Arabidopsis thaliana]
gi|31711986|gb|AAP68349.1| At4g14790 [Arabidopsis thaliana]
gi|332658099|gb|AEE83499.1| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
Length = 571
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/408 (70%), Positives = 339/408 (83%), Gaps = 1/408 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV S YDCA+IDEIQM+GCK RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTG
Sbjct: 163 MADVTSVYDCAIIDEIQMVGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTG 222
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DDV+V +YERLSPLVPL VP+ S S+I+TGDC+VTFSR IY KK IE GKHLCS+VY
Sbjct: 223 DDVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVY 282
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT QATRFND +++FDVLVASDAIGMGLNLNISRIIFST++K+DG E RDLTV
Sbjct: 283 GSLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTV 342
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGR+ SKFP+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS
Sbjct: 343 SEIKQIAGRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLLSGYS 402
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
+ HP LY ILEHF+ENAKLS NYF +N E+++KVA ++D+LPL L EKYLF +SPVD+
Sbjct: 403 QAHPTHGLYQILEHFVENAKLSSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDV 462
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
ND+IS QGL QFA N+SK GIV+LREI P ++VPKT L+ELESIHKVLDLYVWLS
Sbjct: 463 NDEISGQGLAQFAQNFSKAGIVRLREILAPDRVKVPKTPTELKELESIHKVLDLYVWLSL 522
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKP-RVKKVTPRPKLN 407
RLE+SFPDRE+AASQK+IC++LIE+FLE P R + R KL+
Sbjct: 523 RLEDSFPDREVAASQKSICNLLIEQFLEGNRLNSPARFSRYLRRQKLS 570
>gi|110739278|dbj|BAF01552.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 571
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/408 (70%), Positives = 338/408 (82%), Gaps = 1/408 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV S YDCA+IDEIQM+GCK RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTG
Sbjct: 163 MADVTSVYDCAIIDEIQMVGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTG 222
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DDV+V +YERLSPLVPL VP+ S S+I+TGDC+VTFSR IY KK IE GKHLCS+VY
Sbjct: 223 DDVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVY 282
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT QATRFND +++FDVLVASDAIGMGLNLNISRIIFST++K+DG E RDLTV
Sbjct: 283 GSLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTV 342
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGR+ SKFP+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS
Sbjct: 343 SEIKQIAGRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLLSGYS 402
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
+ HP LY ILEHF+ENAKLS NYF +N E+++KVA ++D+LPL EKYLF +SPVD+
Sbjct: 403 QAHPTHGLYQILEHFVENAKLSSNYFISNVEDMMKVAAIVDELPLGWQEKYLFVVSPVDV 462
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
ND+IS QGL QFA N+SK GIV+LREI P ++VPKT L+ELESIHKVLDLYVWLS
Sbjct: 463 NDEISGQGLAQFAQNFSKAGIVRLREILAPDRVKVPKTPTELKELESIHKVLDLYVWLSL 522
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKP-RVKKVTPRPKLN 407
RLE+SFPDRE+AASQK+IC++LIE+FLE P R + R KL+
Sbjct: 523 RLEDSFPDREVAASQKSICNLLIEQFLEGNRLNSPARFSRYLRRQKLS 570
>gi|222625790|gb|EEE59922.1| hypothetical protein OsJ_12550 [Oryza sativa Japonica Group]
Length = 628
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/447 (64%), Positives = 347/447 (77%), Gaps = 42/447 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GC++RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TG
Sbjct: 159 MADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTG 218
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL LGSFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VY
Sbjct: 219 DVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVY 278
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND S +VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV
Sbjct: 279 GSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTV 338
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+S+ LPLLH +L PSP++E AGLFP FD++ +YS
Sbjct: 339 AEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYS 398
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVL-------------------------- 274
RLH ILE FL+ AKLS +YF A+CE++L
Sbjct: 399 RLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAM 458
Query: 275 ----------------KVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 318
KVA ++D+LPL L++KYLFC+SPVD+ DDIS++GL QFA NY+K
Sbjct: 459 RNKKPSQLACMQYRNKKVAAIVDELPLGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAK 518
Query: 319 KGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
KGIV+L+EIFTPGTLQVPK+ L+ELESIHKVL+LYVWLSFRLE+S+PDRELAASQK+I
Sbjct: 519 KGIVRLKEIFTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKSI 578
Query: 379 CSMLIEEFLERLGWQKPRVKKVTPRPK 405
CSMLIEE+LER GWQ+ K +PK
Sbjct: 579 CSMLIEEYLERSGWQQNGRKDFLQKPK 605
>gi|297800732|ref|XP_002868250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314086|gb|EFH44509.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 569
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/388 (72%), Positives = 329/388 (84%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV S YDCA+IDEIQM+GC RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTG
Sbjct: 163 MADVTSVYDCAIIDEIQMVGCTQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTG 222
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DDV+V++YERLSPLVPL V + S S+I+TGDC+VTFSR IY KK IE G HLCS+VY
Sbjct: 223 DDVEVRTYERLSPLVPLKVHVSSVSSIKTGDCLVTFSRKDIYAYKKIIERAGNHLCSVVY 282
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT QATRFND +++FDVLVASDAIGMGLNLNISRIIFST++KFDG E RDLTV
Sbjct: 283 GSLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKFDGSETRDLTV 342
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGR+ SKFP+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS
Sbjct: 343 SEIKQIAGRAGRFRSKFPIGEVTCLHKEDLPLLHSSLKSPSPLLERAGLFPTFDLLSRYS 402
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
+ HP LY ILEHF+ENAKLS NYF +N E+++KVA ++D+LPL L EKYLF +SPVD+
Sbjct: 403 QAHPKHGLYQILEHFVENAKLSSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDI 462
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
ND+IS QGL QFA N+SK G+V+LREI ++VPKT L+ELESIHKVLDLYVWLS
Sbjct: 463 NDEISGQGLAQFAHNFSKAGVVRLREILAADRVKVPKTPTELKELESIHKVLDLYVWLSL 522
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLE 388
RLE+SFPDRE+AASQK+IC++LIE+FLE
Sbjct: 523 RLEDSFPDREVAASQKSICNILIEQFLE 550
>gi|218193743|gb|EEC76170.1| hypothetical protein OsI_13485 [Oryza sativa Indica Group]
Length = 628
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/447 (64%), Positives = 347/447 (77%), Gaps = 42/447 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GC++RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TG
Sbjct: 159 MADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTG 218
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL LGSFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VY
Sbjct: 219 DVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVY 278
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND S +VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV
Sbjct: 279 GSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTV 338
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+S+ LPLLH +L PSP++E AGLFP FD++ +YS
Sbjct: 339 AEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYS 398
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVL-------------------------- 274
RLH ILE FL+ AKLS +YF A+CE++L
Sbjct: 399 RLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAM 458
Query: 275 ----------------KVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 318
KVA ++D+LPL L++KYLFC+SPVD+ DDIS++GL QFA NY+K
Sbjct: 459 RNKKPSQLACMQYRNKKVAAIVDELPLGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAK 518
Query: 319 KGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
KGIV+L+EIFTPGTLQVPK+ L+ELESIHKVL+LYVWLSFRLE+S+PDRELAASQK+I
Sbjct: 519 KGIVRLKEIFTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKSI 578
Query: 379 CSMLIEEFLERLGWQKPRVKKVTPRPK 405
CSMLIEE+LER GWQ+ K +PK
Sbjct: 579 CSMLIEEYLERSGWQQNGRKDFLQKPK 605
>gi|414872748|tpg|DAA51305.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 394
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/383 (70%), Positives = 319/383 (83%), Gaps = 12/383 (3%)
Query: 18 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL 77
M+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TGD V VQ YERLSPLVPL
Sbjct: 1 MVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPLVPL 60
Query: 78 NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 137
PLGSFSNI+ GDC+V+FSR IY+LKK IE GKHLCS+VYGSLPPETRT+QAT FND
Sbjct: 61 KSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQATMFND 120
Query: 138 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF 197
+S+ +VLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV E+KQIAGRAGRYGSKF
Sbjct: 121 DTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSKF 180
Query: 198 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 257
PVGEVTCL+ +DLPLLH SL S ++E AGLFP FDL+ +YSRLH + ILE FLE
Sbjct: 181 PVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPILERFLE 240
Query: 258 NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 317
AKLS +YF +CE++LKVA ++D LPL L++KYLFC+SPVD FA NY+
Sbjct: 241 KAKLSPDYFITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVD------------FAENYA 288
Query: 318 KKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 377
+KGIV+L+EIFTPGTLQVPKT L+ELES+HKVL+LYVWLSFR+++SFPDRE+AASQK+
Sbjct: 289 RKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSFRMDDSFPDREVAASQKS 348
Query: 378 ICSMLIEEFLERLGWQKPRVKKV 400
ICSMLIEE+LER GWQ +KV
Sbjct: 349 ICSMLIEEYLERFGWQPQDRRKV 371
>gi|14626299|gb|AAK71567.1|AC087852_27 putative mitochondrial RNA helicase [Oryza sativa Japonica Group]
Length = 557
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/397 (64%), Positives = 309/397 (77%), Gaps = 16/397 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y CAVIDEIQM+GC++RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TG
Sbjct: 152 MADMTTEYQCAVIDEIQMVGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTG 211
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V VQ YERLSPLVPL LGSFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VY
Sbjct: 212 DVVTVQYYERLSPLVPLKTTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVY 271
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+QAT FND S +VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV
Sbjct: 272 GSLPPETRTKQATMFNDQDSNLNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTV 331
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGRYGSKFPVGEVTCL+S+ LPLLH +L PSP++E AGLFP FD++ +YS
Sbjct: 332 AEIKQIAGRAGRYGSKFPVGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYS 391
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVL---------------KVATVIDQLPL 285
RLH ILE FL+ AKLS +YF A+CE++L A ++ + +
Sbjct: 392 RLHGTDFFQPILERFLDKAKLSPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAM 451
Query: 286 RLHEKYLFCISPVDMNDDISSQGL-TQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE 344
R + + IS QFA NY+KKGIV+L+EIFTPGTLQVPK+ L+E
Sbjct: 452 RNKKPSQLACMQYRNKETISLIFFEMQFAENYAKKGIVRLKEIFTPGTLQVPKSHNQLKE 511
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSM 381
LESIHKVL+LYVWLSFRLE+S+PDRELAASQK+ICSM
Sbjct: 512 LESIHKVLELYVWLSFRLEDSYPDRELAASQKSICSM 548
>gi|302798687|ref|XP_002981103.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
gi|302801642|ref|XP_002982577.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300149676|gb|EFJ16330.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300151157|gb|EFJ17804.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
Length = 480
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 268/385 (69%), Gaps = 5/385 (1%)
Query: 1 MADVVSDYDCAVIDEIQ----MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQIL 56
MAD+ +Y+CAVIDEIQ M+GC RG++FTRAL G+ A E+HLCGDP V LIQ +L
Sbjct: 95 MADITREYECAVIDEIQARTRMIGCSKRGYAFTRALFGLAAKEIHLCGDPCVVTLIQNLL 154
Query: 57 QVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL- 115
+ T D ++V+ Y RLSPLVPL PL I+ GDCIV+FSR I+ K+ IE +
Sbjct: 155 ERTQDTLEVRCYTRLSPLVPLKEPLRDIRRIRGGDCIVSFSRDEIHTYKRDIEKLHPAIN 214
Query: 116 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 175
CS+VYGSLPPETRT+QA RFN A +F +LVASDAIGMGLNLNI RIIF+ + KFDG+
Sbjct: 215 CSVVYGSLPPETRTKQAERFNKADEDFSILVASDAIGMGLNLNIQRIIFTKLDKFDGIAR 274
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
L+V +VKQIAGRAGR+ SK+PVGEVTCL D+ LH++L P+P + +AG+FP FD
Sbjct: 275 CYLSVMQVKQIAGRAGRFKSKYPVGEVTCLKGSDIAHLHRALATPTPAVVAAGVFPTFDQ 334
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I +Y +P+ ILE F+ LS +F + +L +A ++D +PL + ++LFC
Sbjct: 335 IGLYCTFYPNFPFSAILEKFIATVTLSSMFFLCDSSNLLAIARMLDDIPLPMDSRFLFCT 394
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
PVD ++ I L +FA NY+ V L+ + TP T++VP TQ L ELES+HKVLD+Y
Sbjct: 395 CPVDKDNRIIMGALLEFARNYAVNRNVPLKRLLTPATMRVPSTQKDLAELESLHKVLDMY 454
Query: 356 VWLSFRLEESFPDRELAASQKAICS 380
+WLS+RLE++F DRE A +QK +CS
Sbjct: 455 IWLSYRLEDAFVDRESAITQKHLCS 479
>gi|384254154|gb|EIE27628.1| hypothetical protein COCSUDRAFT_11521 [Coccomyxa subellipsoidea
C-169]
Length = 574
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/390 (48%), Positives = 263/390 (67%), Gaps = 1/390 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + AV+DE+QMLG +RG +FTRALLG+ A LHLCGD AA+PL++Q++ G
Sbjct: 144 MASVTRGVEVAVVDEVQMLGDGSRGHAFTRALLGLPAATLHLCGDAAALPLLRQLVADAG 203
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++V++YERL PLVP + L S +++ GDC+V FSR ++ +K+ I++ G H IVY
Sbjct: 204 DTLEVRTYERLLPLVPQSAALTSLKSVRRGDCVVAFSRRDVHAIKRVIDTHGAHQACIVY 263
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LP E RT+QAT FN + F+V+ ASDA+GMGLNLNI R+IFS+M+KFDG R LT
Sbjct: 264 GALPAEARTQQATLFNAPRTGFNVMAASDAVGMGLNLNIRRVIFSSMEKFDGTSFRPLTP 323
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
PEVKQIAGRAGR+GS++ G+VTCL+ D+ LH L +P LE A LFP + + +++
Sbjct: 324 PEVKQIAGRAGRFGSRYSCGQVTCLNDADMAYLHACLGAENPALERACLFPRYQQLALFA 383
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
HPD +L LE F + A LS+++FF++ E + K+A ++ LPL L + Y F ISP D
Sbjct: 384 EQHPDLNLPDALEQFADRATLSDHFFFSDYEAMHKLALMLRHLPLPLRDAYTFAISPADP 443
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+D I S L FAT YS++G V + ++ + +A L LE+ + VLDLYVWLS
Sbjct: 444 DDPIVSSALLSFATAYSQRGTVSA-ALAQSVPVRPARNEAELASLEAAYAVLDLYVWLSH 502
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERL 390
RLE+ FP R A Q+A + L+EE L R+
Sbjct: 503 RLEDGFPGRTAAMQQRAAVAGLVEEALPRI 532
>gi|307106856|gb|EFN55101.1| hypothetical protein CHLNCDRAFT_135006 [Chlorella variabilis]
Length = 548
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 181/397 (45%), Positives = 250/397 (62%), Gaps = 5/397 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA S + AV+DEIQM+ ++RG++FTRALLG+ A LH+CGDPAA+PL++QI+ TG
Sbjct: 110 MASTRSVVEVAVLDEIQMIADESRGWAFTRALLGVPARTLHVCGDPAALPLLEQIVAETG 169
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++V+ YERLSPLV PL S S +Q GDC+V FSR ++ L++ IE G+H C +VY
Sbjct: 170 DRLEVRRYERLSPLVAARRPLASLSQVQRGDCVVAFSRRDVHALRQEIEGYGQHRCCVVY 229
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPP+ R QA+ FN + F+VL ASDA+GMGLNL I RIIF+++ K+DG R LT
Sbjct: 230 GALPPDARQLQASLFNTPRTGFNVLAASDAVGMGLNLAIRRIIFTSLSKYDGTAERALTT 289
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQ+AGRAGRYGS+FP G T EDL L +L +PS L SA L P+ + M
Sbjct: 290 AEIKQVAGRAGRYGSRFPDGIATATTPEDLERLAAALQQPSEELASAYLLPSLAQLEMLH 349
Query: 241 RLHPDSSLYGILEHFLENAKLS---ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
HP L IL F E A+ S Y +A EE +AT++ LPL L E + F ISP
Sbjct: 350 GQHPADKLPAILRRFEEAAQGSLARTQYRYARYEEQYTLATMLRHLPLSLREAWAFSISP 409
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
D +D + L FAT Y+ +G V I G + +++ L++LE+ H+V DLY+W
Sbjct: 410 ADPDDAPVASALLTFATVYAHRGRVSPAAILH-GPVHEARSEMELQQLEAAHRVHDLYIW 468
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
L+FR ++F E ++A S LI+ + +G Q+
Sbjct: 469 LAFRF-DAFTGVEEVQERRAALSALIDASIRSMGAQR 504
>gi|2244836|emb|CAB10258.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268225|emb|CAB78521.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 442
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/236 (72%), Positives = 195/236 (82%), Gaps = 10/236 (4%)
Query: 1 MADVVSDYDCAVIDEIQ------MLGCKTR----GFSFTRALLGICANELHLCGDPAAVP 50
MADV S YDCA+IDEIQ L TR GF+FTRALLGI A+ELHLCGDPA VP
Sbjct: 203 MADVTSVYDCAIIDEIQASLARLWLKKSTRTFCLGFAFTRALLGIAADELHLCGDPAVVP 262
Query: 51 LIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIES 110
L++ IL+VTGDDV+V +YERLSPLVPL VP+ S S+I+TGDC+VTFSR IY KK IE
Sbjct: 263 LVEDILKVTGDDVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFSRKDIYAYKKTIER 322
Query: 111 RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF 170
GKHLCS+VYGSLPPETRT QATRFND +++FDVLVASDAIGMGLNLNISRIIFST++K+
Sbjct: 323 AGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKY 382
Query: 171 DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 226
DG E RDLTV E+KQIAGRAGR+ SKFP+GEVTCL EDLPLLH SL PSP+LE+
Sbjct: 383 DGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILEA 438
>gi|255079218|ref|XP_002503189.1| predicted protein [Micromonas sp. RCC299]
gi|226518455|gb|ACO64447.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/390 (42%), Positives = 247/390 (63%), Gaps = 3/390 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ D AV+DE ++G RG++FTRA+LGI A ELHLCGDPA VPL+Q++++ G
Sbjct: 93 MADIRRMVDVAVVDEAHLMGDPERGYAFTRAILGIPAKELHLCGDPAMVPLVQKVIEEVG 152
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + V Y RL PL L+ PL S N+++GDC+V FSR A+++LK+ + + ++Y
Sbjct: 153 DKLTVHRYTRLQPLKVLDTPLRSIKNVKSGDCLVAFSRKAVHQLKRDVVRQAGLRACVIY 212
Query: 121 GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
GSLPPE R RQA FND A++ +DVL+ASDAIGMGLNL+I R++F+TM+KFDG ++R L
Sbjct: 213 GSLPPEARARQAELFNDRATTGYDVLIASDAIGMGLNLSIRRVVFTTMRKFDGEQMRLLE 272
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
PEVKQIAGRAGR+G F G T + +E LP+L ++ P L + P + + Y
Sbjct: 273 PPEVKQIAGRAGRFGQGFGEGGTTTMVAEQLPILRHAVAAPVVDLTRCSVAPTLEHVECY 332
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
P ++L L +A L +YF A C+ +L A ++++LPL + + ++F ++P +
Sbjct: 333 LEAVPGATLVEALTALCRDASLPPHYFMATCDGMLAAAKLVERLPLSVEDHWMFAVAPAN 392
Query: 300 MNDDI-SSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWL 358
+ D ++ L FA ++++G V +R I P + P+TQ L LE H DLY+WL
Sbjct: 393 VEDGGEGAKALWTFADAFARRGRVGVRIIKRP-PARAPETQGELNVLEQAHAAYDLYLWL 451
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFLE 388
S R +FP+ ELA + + C+ IE L+
Sbjct: 452 SMRHPAAFPEMELAQALRQTCAAAIELGLQ 481
>gi|145341985|ref|XP_001416079.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576303|gb|ABO94371.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 471
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/376 (46%), Positives = 242/376 (64%), Gaps = 8/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M+D+ DCAVIDEIQ+L RG+++TRALLG+ A ELHLCGDP VPL+++I++ TG
Sbjct: 100 MSDLSKVMDCAVIDEIQLLSDPLRGYAYTRALLGLPALELHLCGDPRVVPLVRRIVKSTG 159
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + V+ Y+RLSPL + S +++ GD V FSR A+Y LK+ +E + H ++Y
Sbjct: 160 DLLVVKEYDRLSPLEVSRDIVKSVKDVRKGDAFVAFSRSAVYDLKRELEQKSPHRACVIY 219
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPETR+RQA FN S +DVL+ASDAIGMGLNLNI R+IF+TM KFDG E+R L
Sbjct: 220 GGLPPETRSRQAELFNKPDSGYDVLIASDAIGMGLNLNIKRVIFTTMSKFDGSEMRKLAG 279
Query: 181 PEVKQIAGRAGRYGSKFP-VGEVTCLDSEDLPLLHKSL---LEPSPMLESAGLFPNFDLI 236
PE +QIAGRAGRYG + +G VT D LL +L LEP L AGL P+ + +
Sbjct: 280 PETRQIAGRAGRYGLNYADMGIVTTTKKADYDLLAAALEGELEP---LTQAGLAPSLEQV 336
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
Y L P++ L G L+ ++AKL+ ++ + EE + VA ++++LPL L + +LF I+
Sbjct: 337 EEYCELRPEAGLVGALQALSDSAKLAPHFRMRDMEESIAVAKLLEKLPLTLADHFLFSIA 396
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PVD+ D + + +FA + G +R I P + P L++LES HK LDLY+
Sbjct: 397 PVDIRDSMVVNAMMKFARVFCTHGRAGVRLISLPPA-RTPTAPHELQKLESAHKCLDLYL 455
Query: 357 WLSFRLEESFPDRELA 372
WL+ RL +FP+ LA
Sbjct: 456 WLARRLPNAFPEENLA 471
>gi|308800936|ref|XP_003075249.1| RNA helicase like protein (ISS) [Ostreococcus tauri]
gi|116061803|emb|CAL52521.1| RNA helicase like protein (ISS), partial [Ostreococcus tauri]
Length = 645
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/391 (43%), Positives = 247/391 (63%), Gaps = 2/391 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M+DV S YDCAVIDE+Q+L RG+++TRALLG+ A ELHLCGDP VPL+++I++ TG
Sbjct: 129 MSDVSSVYDCAVIDEVQLLSDPHRGYAYTRALLGLAAIELHLCGDPRVVPLVKKIVESTG 188
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + V+ YERLSPL + + S +++ GD +V FSR +Y++K+ +E + ++Y
Sbjct: 189 DLLTVKEYERLSPLEVSSEIVKSVKDVREGDALVAFSRADVYKMKRELEKKSNFRACVIY 248
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R+RQA FN S +DVL+ASDAIGMGLNLN+ R+IF+TM KFDGV R L
Sbjct: 249 GALPPEARSRQALLFNKPESGYDVLIASDAIGMGLNLNVRRVIFTTMSKFDGVGTRHLEA 308
Query: 181 PEVKQIAGRAGRYGSKFP-VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
PEV+QIAGRAGRYG + G VT + + +L +L L+SAG+ P+ + + Y
Sbjct: 309 PEVRQIAGRAGRYGLDYAGGGSVTTMKRSEHKILVNALEGELKPLDSAGIAPSLEQVEEY 368
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
+H +SL L+ AKL+ +Y N E + VA ++ + PL L +++ F I+PVD
Sbjct: 369 CAIHRGASLLEALQALSNKAKLASHYRMRNMSEPIAVAKMLKKFPLALEDQFTFAIAPVD 428
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
+ D + L F + G V +R I P + PK L++LES HK LDLY+WL+
Sbjct: 429 VKDPMVCAALLTFVKTFCTHGRVGVRLISLPPP-RTPKNPIQLQKLESAHKCLDLYLWLA 487
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLERL 390
+L ++FP+ ELA + + + I L+ L
Sbjct: 488 RKLPKAFPEPELADAYRTATATAISAGLQFL 518
>gi|303283830|ref|XP_003061206.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457557|gb|EEH54856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 474
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/384 (43%), Positives = 238/384 (61%), Gaps = 6/384 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV + VIDE ++G RG++FTRAL+G+ ELH+CGDPA VPL+++I+ G
Sbjct: 93 MADVHKMREIGVIDEGHLMGDAHRGYAFTRALIGLPVKELHVCGDPAMVPLVEKIVAELG 152
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESR-GKHLCSIV 119
D + + Y+RL L + PL S +++ GDC+V FSR A+++LK +E GK C I+
Sbjct: 153 DTLTINRYDRLQELNVIETPLKSLKDVEAGDCLVAFSRKAVHQLKDQVEREAGKRAC-II 211
Query: 120 YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
YGSLPPE R++QA FN+ S +DVL+ASDAIGMGLNL+I R+IF++M+KFDG LR+L
Sbjct: 212 YGSLPPEARSKQAELFNNREESGYDVLIASDAIGMGLNLSIRRVIFASMRKFDGEFLRNL 271
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
PEVKQIAGRAGRYG G T + ++ LPL+ +L P L + P D I +
Sbjct: 272 EPPEVKQIAGRAGRYGKGSTEGGATTMSADTLPLMKAALAAPVVDLTRCSIAPTLDQIAL 331
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
Y PD+ L L F +AK S +YF E++ A ++ LPL L + ++F ++PV
Sbjct: 332 YCEAKPDAGLVAALSAFTSDAKTSPHYFMNAAEQMTDAAKLVAHLPLSLEDHWMFAVAPV 391
Query: 299 DMND--DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
+ D S++ L FA + K+G V +R I +P ++ P T A L E H DLY+
Sbjct: 392 SVADPSSPSARALVTFAEAFVKRGRVSVRIIDSP-PMRAPATLAELDVHEQSHAAYDLYL 450
Query: 357 WLSFRLEESFPDRELAASQKAICS 380
W S R E FP+R+LA + + +C+
Sbjct: 451 WFSLRCPEVFPERDLAQAMRQMCA 474
>gi|302828636|ref|XP_002945885.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
gi|300268700|gb|EFJ52880.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
Length = 507
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 173/391 (44%), Positives = 246/391 (62%), Gaps = 11/391 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AV+DEIQMLG + RG+++TRALLG+ A E+H+ GDPA +PL++ + GD+++V+ Y
Sbjct: 109 DVAVLDEIQMLGDRLRGWAWTRALLGLAAREVHVAGDPAVLPLLRALAAECGDELEVRRY 168
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI-ESRGKHLCSIVYGSLPPET 127
RLSPLV + LGS + + GDC+V FSR +++ L++ + G+ C +VYG+LPPE
Sbjct: 169 RRLSPLVVQSEALGSVARVAGGDCLVAFSRRSLHGLRREVARCTGREAC-LVYGALPPEA 227
Query: 128 RTRQATRFN---DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
R +QA FN A S DVL ASDAIGMGLNLNI R++F+++ K+DG +R L EV+
Sbjct: 228 RRQQAALFNADPAAESGGDVLCASDAIGMGLNLNIRRVVFTSLTKYDGTAVRPLQPAEVR 287
Query: 185 QIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP 244
QIAGRAGR+ S P G VT L SEDL LH++L +P + A L P+ + + Y+ LHP
Sbjct: 288 QIAGRAGRFSSSHPAGYVTTLRSEDLGALHRALAQPPEHITHACLLPSSEALAEYAALHP 347
Query: 245 DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMND 302
+ L L F A+L +Y + N E + +A+ + +L + E LFC +P DM+D
Sbjct: 348 ERPLATSLLTFAATARLGPSYMYGNYEGMYGIASALRELSEDMSYEEMMLFCTAPADMDD 407
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQ---VPKTQAALRELESIHKVLDLYVWLS 359
+ + L +FA Y ++G V +I T G Q + T A L+ LE +H+V DLYVWL
Sbjct: 408 PVVASALLRFAQLYCRRGRVGPEDI-TEGREQPLLLRATPAELKRLEELHRVYDLYVWLF 466
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLERL 390
+RL +F RE A S +A C LIE L+ L
Sbjct: 467 YRLPYAFTGREEAESARAACGSLIEAGLDHL 497
>gi|320167149|gb|EFW44048.1| SUPV3L1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/389 (42%), Positives = 247/389 (63%), Gaps = 6/389 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV +D AVIDE+Q++G + RG+++TRALLG+ A+E+H+CG+P A+ +++ +L+ TG
Sbjct: 209 MADVDKVFDVAVIDEVQLIGDRDRGWAWTRALLGLAAHEIHVCGEPRALSIVESLLKSTG 268
Query: 61 DDVKVQSYERLSPLV--PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
+DV+V +YERL+PLV P ++ + +N++ GD I+ FSR ++R K IE + C+I
Sbjct: 269 EDVQVHTYERLTPLVVAPHSINR-NLANLRRGDAIIAFSRKELFRWKAEIERETRFRCAI 327
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
VYGSLPP+TR +QA FN S FD+LVA+DAIGMGLNLNI RIIF+T++KF+GV L
Sbjct: 328 VYGSLPPQTRAQQARLFNQPDSGFDILVATDAIGMGLNLNIGRIIFTTLQKFNGVSNVTL 387
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
+ EV+QIAGRAGR+ SKFP GE T + ED+ +L K P+ L+ AGL NF+ +
Sbjct: 388 SPSEVRQIAGRAGRFRSKFPRGEFTTFEPEDMGILIKQFNGPADSLQ-AGLMANFEQLEA 446
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
S+ P + + + F + A+L + YF + + + ++ L L ++Y F ++P
Sbjct: 447 LSKQLPGADMLDLFTKFEDLARLDKRYFMCDSSDRKEAIKLLAPLNLSFKDRYTFILAPA 506
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWL 358
++ +D L FAT + + L I P T + L E E HK+LDLY+WL
Sbjct: 507 NLENDYMRSCLLSFATGFEANRPITLAAITVPST--TSGAPSVLNEFEQCHKMLDLYMWL 564
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFL 387
S+R + FPDR+ A +A C+ I E L
Sbjct: 565 SYRFPQLFPDRDAAKQLQAQCAERIMEGL 593
>gi|301104419|ref|XP_002901294.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
gi|262100769|gb|EEY58821.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
Length = 817
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/391 (42%), Positives = 261/391 (66%), Gaps = 8/391 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ +D AV+DEIQ++G RG+++TRAL G+ ANE+H+CG AV L+++ + TG
Sbjct: 337 MANINRPWDVAVVDEIQLIGDPQRGWAWTRALFGLQANEIHVCGSGEAVHLVKKFAETTG 396
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD +++SYER SPL L S+S+I++GDC+V FSR I+++K+ IE + C I+Y
Sbjct: 397 DDFELRSYERRSPLEIAPTHLASYSHIRSGDCVVAFSRRDIFQIKRDIEVKTGQKCCIIY 456
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPETR++QA FND +++F++LVASDAIGMGLNLNI R++F+T+KK+ G + +
Sbjct: 457 GQLPPETRSQQARLFNDRNNDFNILVASDAIGMGLNLNIRRVVFATVKKYSGSSGGMIDI 516
Query: 181 PE--VKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIY 237
P KQIAGRAGRYGS F GE TC+ EDL L +S E P+P L SAGLFP+ + +
Sbjct: 517 PPSLAKQIAGRAGRYGSDFASGEATCVLEEDLEYLKESYDEVPTP-LTSAGLFPSSEQME 575
Query: 238 MYSRLHPD-SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
++R P + L +++ ++ A+L +YF N +++ AT++ + L L +++ FC+S
Sbjct: 576 EFARQLPGITDLADLVDKYVMLARLDGDYFMCNHQDMKDAATLLRETELTLSDRFTFCMS 635
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PV + + ++ + ++A +S V+L +I+ P P+T AL ++E K++DLY+
Sbjct: 636 PVGLRNPLARRVFLEYARAHSLGQSVRL-DIYLPKY--APRTAEALGDVEIKAKIIDLYL 692
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFL 387
WLSFR E++F +++LA K L+E+ L
Sbjct: 693 WLSFRFEDTFVEKDLALELKTRVLELVEQGL 723
>gi|440793632|gb|ELR14811.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 857
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 172/373 (46%), Positives = 238/373 (63%), Gaps = 24/373 (6%)
Query: 17 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76
MLG + RG+++TRALLG+ A E+HLCG+ + VPL+Q+I Q TG+ + V Y RLSPLV
Sbjct: 393 HMLGDQDRGWAWTRALLGLPAAEVHLCGNESIVPLVQKICQDTGERLHVHHYTRLSPLVV 452
Query: 77 LNVPLGS--FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 134
+ PLG + +++ GDC+V FSR I+ LK+ IE +H C +VYG+LPP+TR A
Sbjct: 453 SDTPLGRKWYKSLRAGDCVVAFSRADIHTLKREIERNTRHRCCVVYGNLPPQTR---AEL 509
Query: 135 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
FND +SE++VLVASDAIGMGLNLNISR++FST+ KFDG + R LT E+KQIAGRAGRY
Sbjct: 510 FNDPASEYEVLVASDAIGMGLNLNISRVVFSTLHKFDGHKRRLLTDSEIKQIAGRAGRYR 569
Query: 195 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEH 254
S FP GEVT D DLP + ++LL L SAGL P F+ + M+SR++P S Y +L+
Sbjct: 570 SIFPTGEVTAFDGADLPRIRRALLRELEPLPSAGLAPTFEQVSMFSRVYPQSPFYELLDE 629
Query: 255 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 314
A +S +YF ++ + VA +I+ +PL L E++ F I+P FA
Sbjct: 630 LTLKAAVSSHYFLCGNDDRVSVAKLIESVPLSLRERFKFSIAP--------------FAN 675
Query: 315 NYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAAS 374
+++ +G V++ G + + L ELES H VLDLY+WLS+R +SF R+ A
Sbjct: 676 SHASEGEVEMDLRPERGDSKSGR----LAELESFHHVLDLYLWLSYRF-DSFTGRDRAIR 730
Query: 375 QKAICSMLIEEFL 387
K I+E L
Sbjct: 731 LKQETEQRIQELL 743
>gi|348689571|gb|EGZ29385.1| hypothetical protein PHYSODRAFT_537681 [Phytophthora sojae]
Length = 649
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/422 (40%), Positives = 270/422 (63%), Gaps = 19/422 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ +D AVIDEIQ++G RG+++TRAL G+ A E+H+CG AV L+++ + TG
Sbjct: 190 MANINRPWDVAVIDEIQLIGDPQRGWAWTRALFGLQAKEIHVCGSGEAVHLVKKFAETTG 249
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+ +++SYER SPL L ++SNI++GDC+V FSR I+++K+ IE + C I+Y
Sbjct: 250 DEFELRSYERRSPLEISTTHLKNYSNIRSGDCVVAFSRRDIFQIKRDIEIKTGQKCCIIY 309
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDL 178
G LPPETR++QA FND +++F++LVASDA+GMGLNLNI R++F+T+KK+ G + D+
Sbjct: 310 GQLPPETRSQQARLFNDRNNDFNILVASDAVGMGLNLNIRRVVFATVKKYSGGSGGMVDI 369
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIY 237
KQIAGRAGRYGS F GE TCL EDL L +S E P+P L SAGLFP+ + +
Sbjct: 370 PASLAKQIAGRAGRYGSDFASGEATCLLEEDLEYLKESYDEVPTP-LTSAGLFPSSEQME 428
Query: 238 MYSRLHPD-SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
+++ P + L +++ ++ A+L +YF N +++ AT++ L L +++ FC+S
Sbjct: 429 EFAKQLPGITDLADLVDKYVMLARLDGDYFMCNHQDMKDAATLLRDTELTLSDRFTFCMS 488
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PV + + ++ + ++A +S V+L +I+ P P+T AL ++E K++DLY+
Sbjct: 489 PVSLRNPLARKVFLEYARAHSLGQSVKL-DIYLPKY--PPRTADALGDVEIKAKIIDLYL 545
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFL-----------ERLGWQKPRVKKVTPRPK 405
WLSFR EE+F +++LA KA L+E+ L R G ++ TPR +
Sbjct: 546 WLSFRFEETFVEKDLALELKARVLELVEQGLVNTTYNREEKKTRWGSGAGNGRRSTPRGQ 605
Query: 406 LN 407
++
Sbjct: 606 MD 607
>gi|196009822|ref|XP_002114776.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
gi|190582838|gb|EDV22910.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
Length = 681
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 257/411 (62%), Gaps = 23/411 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ YD +IDEIQM+ RGF++TRALLG+CA ELHLCGDP+ + LI+++ G
Sbjct: 248 MANINEHYDIGIIDEIQMIKDDLRGFAWTRALLGLCAFELHLCGDPSGIDLIRKLADSCG 307
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ +VQ Y+RL PL V N G SN+ GDC+V FSR +++LK ++ES+ H C+I+
Sbjct: 308 DEFEVQRYDRLVPLSVQKNSFDGKLSNVTKGDCVVAFSRKELFKLKYSVESKTDHKCAII 367
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP TR QA FND +++++VLVASDAIGMGLNLNI RIIF+++ KFDG+E+ LT
Sbjct: 368 YGGLPSVTRAHQADLFNDPNNDYNVLVASDAIGMGLNLNIKRIIFNSLMKFDGLEITSLT 427
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+Q+AGRAGR+ S F +GE+T L +DLP++ + L P ++ AGL + + ++
Sbjct: 428 PSHARQVAGRAGRFRSDFNIGEITTLFVDDLPIIQRLLDTPIEPIQRAGLGLTWSDVELF 487
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 298
S P++S IL+ F K+ + +F EE VA ++D + L L EKY+FC++P+
Sbjct: 488 SYYLPEASFTDILDLFSNLVKVGDKFFICRNEEFKNVAAIVDTVEGLLLKEKYIFCLAPI 547
Query: 299 DMNDDISSQGLTQFATNYSKKGIV---QLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
D + + S + +FAT+ K+ + L+E+ P ++P + L LE+++ +LDLY
Sbjct: 548 DHRNPLMSSAVLKFATHVGKRTSITDASLKELI-PYPFKMPDDEEKLFTLEAVYDILDLY 606
Query: 356 VWLSFRLEESFPD-----RELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
+WL FPD E+ QK + S+ I +FL PR +K+
Sbjct: 607 LWL------RFPDYFVNYHEVCRLQKELESV-ISKFL-----ASPRKRKIV 645
>gi|328875555|gb|EGG23919.1| Mitochondrial RNA helicase [Dictyostelium fasciculatum]
Length = 852
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 241/386 (62%), Gaps = 8/386 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + D AVIDE QML RGF++TRA+LGI A E+HLCGD +V L++++L +TG
Sbjct: 438 MASTRDEVDVAVIDEFQMLSDIDRGFAWTRAILGIPAKEIHLCGDNTSVELVKRMLDLTG 497
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++V Y+RLSPLV P S ++ GDC+V FSR + K ++E CS+VY
Sbjct: 498 DTIEVNYYDRLSPLVVDTKP-ASLGRLEKGDCVVAFSRREVLTTKASLEKMYGKKCSVVY 556
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q FND SS+ V+VA+DAIGMGLNLNI RIIFST+KKFDG + R L
Sbjct: 557 GALPPEARVQQTRAFNDTSSDVQVIVATDAIGMGLNLNIKRIIFSTIKKFDGKQQRLLKH 616
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+KQIAGRAGR+ S + VG VTC ++ DLP + K L P+ E AG+FP ++ + +S
Sbjct: 617 SELKQIAGRAGRFASAYNVGMVTCTNARDLPTIKKLLELPNVANERAGVFPQWEQLETFS 676
Query: 241 RLHPDSSL--YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
L + S+ ++ F+E+ +L YF + E+ L+ A +ID L + + ++Y+F ++P+
Sbjct: 677 TLQDNHSIPFSELMTMFIEHTELDNLYFLEDIEDKLRAAKLIDHLDMEVSDRYIFIMAPI 736
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWL 358
+I + L QFAT +S V+LRE + V K Q L ELE I+ + DLY+WL
Sbjct: 737 KNGVEIEKK-LVQFATQFSNNKEVRLREKMPEFSSSVSK-QKQLVELEIIYAISDLYLWL 794
Query: 359 SFRLEESFPDRELAASQKAICSMLIE 384
R F D E A+ IC+ + E
Sbjct: 795 GQRFRSRFQDVEKASQ---ICNDINE 817
>gi|126343373|ref|XP_001380624.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Monodelphis domestica]
Length = 777
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/379 (43%), Positives = 242/379 (63%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG
Sbjct: 273 MCTVTAPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHLCGEAAAIDIVTELMYTTG 332
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ+YERL+P+ LN L S N+Q GDCIV FS++ IY + + IE+RG +++Y
Sbjct: 333 EEVEVQNYERLTPITVLNRALESLDNLQPGDCIVCFSKNDIYSVSRQIETRGLE-SAVIY 391
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF+++ K E+
Sbjct: 392 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEM 451
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QI+GRAGR+ SKF GEVT + EDL LL + L +P +E+AGL P D
Sbjct: 452 EPISTSQALQISGRAGRFSSKFKEGEVTTMYPEDLKLLKEILNKPVEPIEAAGLHPTADQ 511
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 512 IEMFAYHLPDTTLANLIDIFVDFSQVDGQYFVCNMDDFKFSADLIQHIPLSLRVRYVFCT 571
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR +T LQ PK L ELE+IH VL
Sbjct: 572 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YTRWPLQAPKNIKDLVELEAIHDVL 630
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 631 DLYLWLSYRFVDMFPDATL 649
>gi|115458774|ref|NP_001052987.1| Os04g0459800 [Oryza sativa Japonica Group]
gi|113564558|dbj|BAF14901.1| Os04g0459800 [Oryza sativa Japonica Group]
Length = 609
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 246/399 (61%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 160 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 219
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 220 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 279
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 280 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 339
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 340 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 399
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN ++ YF + E + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 400 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 459
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FATNYS+ V + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 460 MYHLLRFATNYSQSRRVSIAMGMPKGS---AKNDTELLDLETKHQVLSMYLWLSHHFEED 516
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
FP + A + L+ + L + W+ ++ PR
Sbjct: 517 HFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPR 555
>gi|10176976|dbj|BAB10208.1| mitochondrial RNA helicase-like protein [Arabidopsis thaliana]
Length = 769
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/392 (40%), Positives = 250/392 (63%), Gaps = 13/392 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ +RG ++T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ +
Sbjct: 355 YEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEH 414
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 415 YERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPE 474
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 475 TRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQI 534
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L EDL L + L +P + GLFP F+ I +++ PD
Sbjct: 535 AGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDM 594
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +LEHF ++ +L +YF + V KVA +++++ L L +++ FC +PV++ + +
Sbjct: 595 AFSNLLEHFGKHCRLDGSYFLCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRA 654
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELESIHKVLDLYVWLSFR 361
L +FA++YS+ V + + +PK+ A L +LES H++L +Y+WLS +
Sbjct: 655 MHNLYRFASSYSQNMPVNV-------AMGIPKSSAKSDAQLLDLESRHQILSMYLWLSNQ 707
Query: 362 LEESFPDRELAASQKAICSMLIEEFLERLGWQ 393
EE+FP E + + L+ E L + W+
Sbjct: 708 FEENFPFVEKVEAMATNIAELLGESLSKASWK 739
>gi|32492143|emb|CAE03376.1| OSJNBa0036B21.27 [Oryza sativa Japonica Group]
Length = 725
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 246/399 (61%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 285 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 344
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 345 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 404
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 405 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 464
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 465 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 524
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN ++ YF + E + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 525 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 584
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FATNYS+ V + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 585 MYHLLRFATNYSQSRRVSIAMGMPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEED 641
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
FP + A + L+ + L + W+ ++ PR
Sbjct: 642 HFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPR 680
>gi|15242497|ref|NP_198800.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|332007099|gb|AED94482.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 776
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/392 (40%), Positives = 250/392 (63%), Gaps = 13/392 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ +RG ++T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ +
Sbjct: 355 YEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEH 414
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 415 YERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPE 474
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 475 TRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQI 534
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L EDL L + L +P + GLFP F+ I +++ PD
Sbjct: 535 AGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDM 594
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +LEHF ++ +L +YF + V KVA +++++ L L +++ FC +PV++ + +
Sbjct: 595 AFSNLLEHFGKHCRLDGSYFLCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRA 654
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELESIHKVLDLYVWLSFR 361
L +FA++YS+ V + + +PK+ A L +LES H++L +Y+WLS +
Sbjct: 655 MHNLYRFASSYSQNMPVNV-------AMGIPKSSAKSDAQLLDLESRHQILSMYLWLSNQ 707
Query: 362 LEESFPDRELAASQKAICSMLIEEFLERLGWQ 393
EE+FP E + + L+ E L + W+
Sbjct: 708 FEENFPFVEKVEAMATNIAELLGESLSKASWK 739
>gi|222628992|gb|EEE61124.1| hypothetical protein OsJ_15051 [Oryza sativa Japonica Group]
Length = 700
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 246/399 (61%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 251 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 310
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 311 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 370
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 371 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 430
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 431 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 490
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN ++ YF + E + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 491 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 550
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FATNYS+ V + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 551 MYHLLRFATNYSQSRRVSIAMGMPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEED 607
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
FP + A + L+ + L + W+ ++ PR
Sbjct: 608 HFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPR 646
>gi|326319838|emb|CBW45782.1| ORW1943Ba0077G13.10 [Oryza rufipogon]
Length = 734
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 246/399 (61%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 285 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 344
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 345 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 404
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 405 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 464
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 465 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 524
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN ++ YF + E + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 525 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 584
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FATNYS+ V + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 585 MYHLLRFATNYSQSRRVSIAMGMPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEED 641
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
FP + A + L+ + L + W+ ++ PR
Sbjct: 642 HFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPR 680
>gi|38344959|emb|CAD40979.2| OSJNBa0072F16.4 [Oryza sativa Japonica Group]
gi|116310057|emb|CAH67079.1| OSIGBa0097P08.9 [Oryza sativa Indica Group]
gi|116310442|emb|CAH67447.1| H0219H12.4 [Oryza sativa Indica Group]
Length = 734
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 246/399 (61%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 285 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 344
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 345 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 404
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 405 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 464
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 465 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 524
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN ++ YF + E + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 525 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 584
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FATNYS+ V + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 585 MYHLLRFATNYSQSRRVSIAMGMPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEED 641
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
FP + A + L+ + L + W+ ++ PR
Sbjct: 642 HFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPR 680
>gi|359488988|ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 806
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 254/401 (63%), Gaps = 6/401 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++ Q
Sbjct: 368 YDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQH 427
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 428 YERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPE 487
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA+ FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 488 TRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIVPVPATQVKQI 547
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L +DL L + L +P ++ GLFP F+ + +++ PD
Sbjct: 548 AGRAGRRGSRYPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQLPDV 607
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+L +LE F EN +L +YF + + KVA ++ ++ L L +++ FC +PV++ D +
Sbjct: 608 TLSHLLEKFSENCQLDGSYFLCRHDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKA 667
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA++YS+ V + G+ + + L +LE+ H+VL +Y+WLS EE
Sbjct: 668 MYHLLRFASSYSQNLPVNIAMGMPKGS---ARNDSELLDLETKHQVLSMYLWLSHHFTEE 724
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
+FP + A + + L+ + L + W+ + P+P+
Sbjct: 725 TFPYVKKAETMATGIADLLGQSLSKACWKPESRQAGKPKPQ 765
>gi|356573474|ref|XP_003554884.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 829
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 261/412 (63%), Gaps = 16/412 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA Y+ AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I Q TG
Sbjct: 372 MASAQELYEVAVIDEIQMMADSNRGYAWTRALLGLKADEIHLCGDPSVLDIVRKICQDTG 431
Query: 61 DDVKVQSYERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ Q YER PLV LG+F NI++GDC+V FSR I+ +K AIE + KH C ++
Sbjct: 432 DELCEQHYERFKPLVVEAKTLLGNFENIRSGDCVVAFSRREIFEVKLAIEKQTKHRCCVI 491
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETR +QA+ FND S+E+DVLVASDA+GMGLNLNI R+IF+++ K++G ++ +
Sbjct: 492 YGALPPETRRQQASLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNSLAKYNGDKMVPIP 551
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+VKQIAGRAGR G +P G T + +DL L + L +P ++ GLFP ++ + ++
Sbjct: 552 ASQVKQIAGRAGRRGCLYPDGLATTMHLDDLDYLIECLKQPFDDVKKVGLFPFYEQVELF 611
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 298
S PD + ILE F EN +L +YF + K+A ++ ++ L L + + FC +PV
Sbjct: 612 SGQLPDLTFPQILEKFGENCRLDGSYFLCQHNHIKKIANMLGKVQGLSLKDHFNFCFAPV 671
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQ----AALRELESIHKVLDL 354
++ D + L ++AT++ +K V + + +P++ A L +LE+ H+VL +
Sbjct: 672 NVRDPKAMYHLLRYATSFGQKLPVNV-------AMGMPRSSARNDAELLDLETRHQVLSM 724
Query: 355 YVWLSFRL-EESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
Y+WLS EE+FP + + + + L+ + L R W KP ++ RPK
Sbjct: 725 YLWLSNHFDEETFPYVKKVEAMASCIADLLGQSLVRANW-KPE-SRIKGRPK 774
>gi|357167747|ref|XP_003581313.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 712
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 247/401 (61%), Gaps = 6/401 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + +++++ TGDD++V
Sbjct: 278 YEVAVVDEIQMMADSVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKVCADTGDDLEVHQ 337
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 338 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 397
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 398 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLTKYNGDKMVPVAASQVKQI 457
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T S+DL L + L +P + GLFP F+ + M++ PD
Sbjct: 458 AGRAGRRGSVYPDGLTTTFLSDDLDYLIQCLQKPFEEAQKVGLFPCFEQVEMFASQFPDL 517
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L F EN ++ YF + + KVA +++++ L L ++Y FC +PV+ D +
Sbjct: 518 TFTDLLNKFRENCRIDNTYFMCQQDSIKKVANMLERVQGLSLKDRYNFCFAPVNTRDPKA 577
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FAT+YS+ + G+ K L +LE+ H+VL +Y+WLS EE
Sbjct: 578 MYHLLRFATHYSQSRRATIAMGMPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEED 634
Query: 366 -FPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
FP + A + L+ + L ++ W+ ++ RP+
Sbjct: 635 HFPHVQKAEEMAVNIADLLGKSLAKVCWKPESRQQRKQRPE 675
>gi|356550962|ref|XP_003543849.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 805
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/412 (40%), Positives = 262/412 (63%), Gaps = 16/412 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA Y+ AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I Q G
Sbjct: 366 MASTQELYEVAVIDEIQMMADSNRGYAWTRALLGLTADEIHLCGDPSVLDIVRKICQDMG 425
Query: 61 DDVKVQSYERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ Q YER PLV LG+ NI++GDC+V FSR I+ +K AIE + KH C ++
Sbjct: 426 DELCEQHYERFKPLVVEAKTLLGNLENIRSGDCVVAFSRREIFEVKLAIEKQTKHRCCVI 485
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETR +QA+ FND S+E+DVLVASDA+GMGLNLNI R+IF+++ K++G ++ +
Sbjct: 486 YGALPPETRRQQASLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNSLTKYNGDKMVPVP 545
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+VKQIAGRAGR G +P G T L +DL L + L +P ++ GLFP+++ + ++
Sbjct: 546 ASQVKQIAGRAGRRGCLYPDGLATTLHLDDLDYLIECLKQPFDDVKKVGLFPSYEQVELF 605
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 298
S PD + ILE F EN +L +YF + K+A +++++ L L +++ FC +PV
Sbjct: 606 SGQLPDLTFTQILEKFGENCRLDGSYFLCQHNHIKKIANMLEKVQGLSLEDRFNFCFAPV 665
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQ----AALRELESIHKVLDL 354
++ D + L ++AT++ +K V + + +P++ A L +LE+ H+VL +
Sbjct: 666 NVRDPKAMYHLLRYATSFGQKLPVNV-------AMGMPRSSARNDAELLDLETRHQVLSM 718
Query: 355 YVWLSFRL-EESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
Y+WLS EE+FP + + + + L+ + L + W KP ++ RPK
Sbjct: 719 YLWLSNHFDEETFPYVKKVEAMASCIADLLGQSLVKANW-KPE-SRIKGRPK 768
>gi|147834594|emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]
Length = 906
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 253/401 (63%), Gaps = 6/401 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++ Q
Sbjct: 415 YDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQH 474
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 475 YERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPE 534
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA+ FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 535 TRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIVPVPATQVKQI 594
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L +DL L + L +P ++ GLFP F+ + +++ PD
Sbjct: 595 AGRAGRRGSRYPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQLPDV 654
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+L +LE F EN L +YF + + KVA ++ ++ L L +++ FC +PV++ D +
Sbjct: 655 TLSHLLEKFSENCXLDGSYFLCRHDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKA 714
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA++YS+ V + G+ + + L +LE+ H+VL +Y+WLS EE
Sbjct: 715 MYHLLRFASSYSQNLPVNIAMGMPKGS---ARNDSELLDLETKHQVLSMYLWLSHHFTEE 771
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
+FP + A + + L+ + L + W+ + P+P+
Sbjct: 772 TFPYVKKAETMATGIADLLGQSLSKACWKPESRQAGKPKPQ 812
>gi|168038100|ref|XP_001771540.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677267|gb|EDQ63740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 608
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 257/407 (63%), Gaps = 7/407 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + ++ AVIDE+QM+ + RG+++TRA LG+ A+E+H+CGDP+AVPL++ + TG
Sbjct: 174 MAYLSKQWEVAVIDEVQMMSDEYRGWAWTRAFLGLQADEIHVCGDPSAVPLLRSLCVATG 233
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ YER PL + L G FSN++ GDCIV FSR I+ +K+ +E C +V
Sbjct: 234 DELIENEYERFKPLRLDSKSLNGDFSNVEAGDCIVAFSRKDIFDVKREVELATNQKCCVV 293
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETRT+QA FND +S +DVLVASDA+GMGLNLNI R++F ++ KFDG R +
Sbjct: 294 YGALPPETRTQQAKLFNDPNSGYDVLVASDAVGMGLNLNIRRVVFYSLDKFDGDAKRPIP 353
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
P+VKQIAGRAGR GS FP G T S+D+P L +SL + +AGLFP ++ + ++
Sbjct: 354 APQVKQIAGRAGRRGSIFPDGVTTAFYSQDIPYLEQSLQQSFEPATAAGLFPVYEQVELF 413
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 298
+ P+ S +LE F E +L +YF + + +VA+V+D++ L L +++ FC +PV
Sbjct: 414 ASQLPEISFAQLLERFAETCRLDGSYFLCRYDNLKRVASVLDKVKGLSLEDRFNFCFTPV 473
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWL 358
++ D S L ++A +S+K I + ++ P L + + L +LE+ H+VL +Y+WL
Sbjct: 474 NVRDPQSLGALYRYALAFSQK-IPVVVQMGAP--LNSARDEFELMDLETRHQVLSMYLWL 530
Query: 359 SFRLEESFPDRELAASQKA--ICSMLIEEFLERLGWQKPRVKKVTPR 403
S E ++ A++ A I ++L + ++ G R +K P+
Sbjct: 531 SQHFPEELFVQKAKAAEMATHIATLLGQSLVQSAGRWHGRQRKAGPK 577
>gi|449495319|ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 795
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 250/401 (62%), Gaps = 6/401 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++ Q
Sbjct: 378 YEIAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQH 437
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG F N+++GDCIV FSR I+ +K AIE KH C ++YGSLPPE
Sbjct: 438 YERFKPLVVEAKTLLGDFKNVRSGDCIVAFSRREIFEVKLAIEKFTKHRCCVIYGSLPPE 497
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR QA+ FND +EFDVLVASDA+GMGLNLNI R++F + KF+G ++ + +VKQI
Sbjct: 498 TRRHQASLFNDQDNEFDVLVASDAVGMGLNLNIGRVVFYNLAKFNGDKIVPVPASQVKQI 557
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T +DL L + L +P ++ GLFP+F+ + +++
Sbjct: 558 AGRAGRRGSRYPDGLTTTFCLDDLDYLIECLKQPFDEVKKIGLFPSFEQVELFAGQISKV 617
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN +L +YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 618 AFAELLQKFSENCRLDGSYFLCRHDNIKKVANMLEKVSGLSLEDRYNFCFAPVNVRDPKA 677
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA++YS V + G+ ++ + L +LES H+VL +Y+WLS EE
Sbjct: 678 MYHLLRFASSYSHNVPVSIAMGMPKGS---ARSDSELLDLESKHQVLSMYLWLSQHFKEE 734
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
+FP + + L+ + L + W+ + P+P+
Sbjct: 735 TFPYVKKVEVMATDIAKLLGQSLTKANWKPESRQAGKPKPR 775
>gi|223974755|gb|ACN31565.1| unknown [Zea mays]
Length = 551
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 249/399 (62%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RGF+++RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V
Sbjct: 102 YEVAVVDEIQMMADPVRGFAWSRAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQ 161
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG NI++GDC+V FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 162 YERFKPLVVEAKTLLGDLKNIRSGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPE 221
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVL+ASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 222 TRRQQAKLFNEQDNEYDVLIASDAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQI 281
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + AG+FP F+ + M++ P+
Sbjct: 282 AGRAGRRGSVYPDGLTTTFLKDDLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNL 341
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
S +L+ F ++ ++ + YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 342 SFNDLLDKFRDSCRIDKTYFMCQQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKA 401
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEE- 364
L +FATNYS V + G+ K A L +LE+ H+VL +Y+WLS EE
Sbjct: 402 MYHLLRFATNYSHSRRVGIAMGIPRGS---AKNDAELLDLETKHQVLSMYLWLSHHFEED 458
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
+FP + A + + L+ + L + W+ ++V R
Sbjct: 459 NFPHVQQAENMAINIADLLGKSLAKACWKPESRQQVRGR 497
>gi|449441634|ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 777
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 250/401 (62%), Gaps = 6/401 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++ Q
Sbjct: 360 YEIAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQH 419
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG F N+++GDCIV FSR I+ +K AIE KH C ++YGSLPPE
Sbjct: 420 YERFKPLVVEAKTLLGDFKNVRSGDCIVAFSRREIFEVKLAIEKFTKHRCCVIYGSLPPE 479
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR QA+ FND +EFDVLVASDA+GMGLNLNI R++F + KF+G ++ + +VKQI
Sbjct: 480 TRRHQASLFNDQDNEFDVLVASDAVGMGLNLNIGRVVFYNLAKFNGDKIVPVPASQVKQI 539
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T +DL L + L +P ++ GLFP+F+ + +++
Sbjct: 540 AGRAGRRGSRYPDGLTTTFCLDDLDYLIECLKQPFDEVKKIGLFPSFEQVELFAGQISKV 599
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F EN +L +YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 600 AFAELLQKFSENCRLDGSYFLCRHDNIKKVANMLEKVSGLSLEDRYNFCFAPVNVRDPKA 659
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA++YS V + G+ ++ + L +LES H+VL +Y+WLS EE
Sbjct: 660 MYHLLRFASSYSHNVPVSIAMGMPKGS---ARSDSELLDLESKHQVLSMYLWLSQHFKEE 716
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
+FP + + L+ + L + W+ + P+P+
Sbjct: 717 TFPYVKKVEVMATDIAKLLGQSLTKANWKPESRQAGKPKPR 757
>gi|326498319|dbj|BAJ98587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 728
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 252/401 (62%), Gaps = 15/401 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+G RG+++TRA+LGI A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 278 YEVAVVDEIQMMGDSVRGYAWTRAVLGIKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 337
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 338 YERFKPLVVEAKSLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 397
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 398 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDRMVPVAASQVKQI 457
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + M++ P+
Sbjct: 458 AGRAGRRGSVYPDGLTTTFLLDDLDYLIQCLQQPFEEAQKIGLFPCFEQVEMFASQFPNL 517
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+ F +N ++ + YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 518 TFTDLLDKFRDNCRIDKTYFMCQQDGIKKVANMLERVQGLSLKDRYNFCFAPVNIRDPKA 577
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQA----ALRELESIHKVLDLYVWLSFR 361
L +FAT+YS Q+R + + +PK A L +LE+ H+VL +Y+WLS
Sbjct: 578 MYHLLRFATHYS-----QIRRVSI--AMGMPKGSARNDTELLDLETKHQVLSMYLWLSHH 630
Query: 362 LEE-SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
EE +FP + A + L+ + L + W KP ++ T
Sbjct: 631 FEEDNFPHVQKAEEMATNIADLLGKSLAKASW-KPESRQQT 670
>gi|226500860|ref|NP_001151526.1| ATP-dependent RNA helicase SUV3 [Zea mays]
gi|195647420|gb|ACG43178.1| ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 727
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 249/399 (62%), Gaps = 6/399 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RGF+++RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V
Sbjct: 278 YEVAVVDEIQMMADPVRGFAWSRAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQ 337
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG NI++GDC+V FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 338 YERFKPLVVEAKTLLGDLKNIRSGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPE 397
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVL+ASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 398 TRRQQAKLFNEQDNEYDVLIASDAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQI 457
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + AG+FP F+ + M++ P+
Sbjct: 458 AGRAGRRGSVYPDGLTTTFLKDDLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNL 517
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
S +L+ F ++ ++ + YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 518 SFNDLLDKFRDSCRIDKTYFMCQQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKA 577
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEE- 364
L +FATNYS V + G+ K A L +LE+ H+VL +Y+WLS EE
Sbjct: 578 MYHLLRFATNYSHSRRVGIAMGIPRGSA---KNDAELLDLETKHQVLSMYLWLSHHFEED 634
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
+FP + A + + L+ + L + W+ ++V R
Sbjct: 635 NFPHVQQAENMAINIADLLGKSLAKACWKPESRQQVRGR 673
>gi|297805736|ref|XP_002870752.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
gi|297316588|gb|EFH47011.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
Length = 777
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/406 (39%), Positives = 256/406 (63%), Gaps = 15/406 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AVIDEIQM+ +RG ++T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ +
Sbjct: 355 YEVAVIDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEH 414
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 415 YERFKPLVVEAKTLLGDLKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPE 474
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G ++ + +VKQI
Sbjct: 475 TRRQQANLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQI 534
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L EDL L + L +P + GLFP F+ I +++ PD
Sbjct: 535 AGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDM 594
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +L+HF ++ +L +YF + V KVA +++++ L L +++ FC +PV++ + +
Sbjct: 595 AFSKLLDHFGKHCRLDGSYFLCRHDHVKKVANMLEKVQGLSLEDRFNFCFAPVNIRNPKA 654
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELESIHKVLDLYVWLSFR 361
L +FA+ YS+ V + + VPK+ A L +LES H++L +Y+WLS +
Sbjct: 655 MYQLYRFASTYSQDTPVNI-------AMGVPKSSAKNDTELLDLESRHQILSMYLWLSNQ 707
Query: 362 LEE-SFPDRELAASQKAICSMLIEEFLERLGWQ-KPRVKKVTPRPK 405
EE +FP E + + L+ E L + W+ + + +KV + K
Sbjct: 708 FEEKNFPFVERVEAMATNVAELLGESLSKASWKMESKEEKVKGQKK 753
>gi|255566773|ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 820
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/389 (40%), Positives = 249/389 (64%), Gaps = 6/389 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+G RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++
Sbjct: 388 YDVAVIDEIQMMGDAFRGYAWTRALLGLKADEIHLCGDPSVLNIVRKICSETGDELIENH 447
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y R PLV LG N+++GDC+V FSR I+ +K IE KH C ++YG+LPPE
Sbjct: 448 YGRFKPLVVEAKTLLGDLKNVRSGDCVVAFSRREIFEVKLTIEKHTKHRCCVIYGALPPE 507
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FND +EFDVLVASDA+GMGLNLNI R++F+++ K++G ++ + +VKQI
Sbjct: 508 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFNSLSKYNGDKIVSVPASQVKQI 567
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L +DL L + L +P ++ GLFP F+ + +++ P+
Sbjct: 568 AGRAGRRGSRYPDGLTTTLHLDDLNYLIECLKQPFEEVKKVGLFPFFEQVELFAGKIPNI 627
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +LE F E+ +L +YF + + KVA +++++ L L +++ FC +PV++ D +
Sbjct: 628 TFPQMLEKFGESCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA 687
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA++YS+K V + G+ + L LE+ H+VL +Y+WLS + EE
Sbjct: 688 MYHLLRFASSYSQKVPVGIAMGMPKGS---ARNDTELLNLETKHQVLSMYLWLSHQFKEE 744
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQ 393
+FP ++ A + + L+ + L + W+
Sbjct: 745 TFPYKKKAEAMATEIADLLGDSLTKARWK 773
>gi|325185729|emb|CCA20210.1| ATPdependent RNA helicase SUPV3L1 putative [Albugo laibachii Nc14]
Length = 806
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 256/407 (62%), Gaps = 7/407 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ +D AVIDE+Q++G RG+++TRAL G+ A E+H+CG AV LI+ + TG
Sbjct: 339 MANINVKWDVAVIDEVQLIGDLQRGWAWTRALFGLQAREIHVCGSGDAVNLIRNFAETTG 398
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD +++SY+R S L + S S IQ GDC+V FSR IY++K+ IE C IVY
Sbjct: 399 DDFELKSYKRRSSLEIETSHVSSLSQIQAGDCVVAFSRREIYQIKRDIERTTGMKCCIVY 458
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDL 178
G LPP+TR++QA FND +S + VLVASDAIGMGLNLNI RIIFS +KK++G + D+
Sbjct: 459 GLLPPQTRSQQARLFNDPNSGYSVLVASDAIGMGLNLNIRRIIFSNVKKYNGASGGMADI 518
Query: 179 TVPEVKQIAGRAGRYGSKFP-VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
+ VKQIAGRAGRYG++F VG+V+ EDL + S EP L SAGLFPN + +
Sbjct: 519 SPSLVKQIAGRAGRYGTQFADVGKVSSFRKEDLDYIRTSFYEPLTPLRSAGLFPNSEQME 578
Query: 238 MYSRLHPD-SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
++ P + L +++ ++ A+L YF N ++ + A ++ +PL L +++ FC++
Sbjct: 579 QFAAHLPGVTDLAELVDKYVMLARLDGEYFMCNHADLKESADLLKDIPLVLSDRFTFCMA 638
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
P++ + ++ + +A+ ++K V+L +I+ P P+T ALR++E +++DLY+
Sbjct: 639 PLNTRNMLARRIFQDYASAHAKLDRVKL-DIYLPRY--APRTSEALRDVEIKAQIIDLYL 695
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
WLS R ++F ++ELA + K L+E+ L + + +PR
Sbjct: 696 WLSQRFPDTFVEQELAITLKTQVLSLVEQGLHNTTYNVKNEQNRSPR 742
>gi|291231755|ref|XP_002735830.1| PREDICTED: suppressor of var1, 3-like 1-like [Saccoglossus
kowalevskii]
Length = 772
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 241/386 (62%), Gaps = 12/386 (3%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML RG+++TRALLG+CA+E+H+CG+ AA+ L+ ++ TG+DV++ Y
Sbjct: 270 EVAVIDEIQMLKDAGRGWAWTRALLGVCADEIHVCGEAAAIDLVNSLMLETGEDVEINRY 329
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERL+PL L+ L + N+Q GDCIV FS++ IY++ + +E +GK C+++YGSLPP T+
Sbjct: 330 ERLTPLTILDEALVNLDNVQPGDCIVAFSKNDIYKISRELERKGK-ACAVIYGSLPPGTK 388
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVELRDLTVPEV 183
QA +FND +LVA+DA+GMGLNL+I RIIF+ T+ + +E+ LT +
Sbjct: 389 LAQAQKFNDPDDPCKILVATDAVGMGLNLSIKRIIFNSVVKPTLNEKGEIEIDRLTTSQA 448
Query: 184 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
QIAGRAGRYGSKF GEVT L +DLP+L + L P +E+ GL P + I +++
Sbjct: 449 LQIAGRAGRYGSKFADGEVTTLYPDDLPILKEILDNPVETIEAGGLHPTAEQIELFAYQL 508
Query: 244 PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 303
PD++ +++ F+ ++++ +YF N ++ +A +I +PL L +Y FC +P++
Sbjct: 509 PDATFSNLVDIFVHLSEVNPHYFVCNLDDFKFLADMIQHIPLALRARYTFCCAPINRKHL 568
Query: 304 ISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
+FA YS+ + + I P L++P T L LE++H VLDLY+W S
Sbjct: 569 FVCTSFLKFARQYSRNDALTFEWLCKHIRWP--LKLPMTIKELMHLEAVHDVLDLYLWFS 626
Query: 360 FRLEESFPDRELAASQKAICSMLIEE 385
+R + FP+ E + +I+E
Sbjct: 627 YRFMDMFPEGEAVRQIQQELDYIIQE 652
>gi|449504697|ref|XP_002191074.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Taeniopygia guttata]
Length = 673
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 237/375 (63%), Gaps = 8/375 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+PAA+ L+ +++ TG
Sbjct: 147 MCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEPAAIDLVTELMYTTG 206
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++YERL+PL L+ L S N++ GDCIV FS++ IY + + IE+RG C+++Y
Sbjct: 207 EEVEVRNYERLTPLTVLDYALESLDNLRPGDCIVCFSKNDIYSISRQIEARGLE-CAVIY 265
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL I RIIF+ T+ + E+
Sbjct: 266 GSLPPGTKLEQAKKFNDPDDPCKILVATDAIGMGLNLCIRRIIFNSIVKPTVNEKGEKEI 325
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+GS F GEVT + +DL L + L EP P +++AGL P +
Sbjct: 326 DSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLARLKEILSEPVPPVQAAGLHPTPEQ 385
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 386 IEMFAYHLPDATLSNLIDIFVSLSQVDGMYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 445
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ + L +FA +S+ + + T L PK L LE++H V D
Sbjct: 446 APLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAAPKNIKELVHLEAVHDVFD 505
Query: 354 LYVWLSFRLEESFPD 368
LY+WLS+R + FPD
Sbjct: 506 LYLWLSYRFMDMFPD 520
>gi|348575908|ref|XP_003473730.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cavia porcellus]
Length = 786
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 236/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ LN L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRKYKRLTPISVLNHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA RFND S +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 397 GSLPPGTKLAQAKRFNDPSDPCKILVATDAIGMGLNLSIKRIIFYSLLKPTVNEKGEKEI 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P ++SAGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNREDLDLLKEILNRPVDPIKSAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ NYF N + A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDTTLSNLIDIFVDFSQVDGNYFVCNMADFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P+ L QFA YS+ LR + L PK L +LE+IH VL
Sbjct: 577 APISKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAIHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDATL 654
>gi|432852834|ref|XP_004067408.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oryzias latipes]
Length = 779
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 240/377 (63%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA+E+H+CG+PAAV I++++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCADEIHVCGEPAAVDFIRELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P LN + S N++ GDCIV FS++ IY + + IE++G C+++Y
Sbjct: 338 EEVEVHTYQRLTPFSILNHAVESLDNLRPGDCIVCFSKNDIYSISRQIEAKGLE-CAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
GSLPP T+ QA +FND ++LVA+DAIGMGLNL+I RIIF+++ K + E +
Sbjct: 397 GSLPPGTKLSQAKKFNDPDDPCNILVATDAIGMGLNLSIKRIIFNSLVKPNVNEKGEKQM 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ SKF GEVT + +DLP+L + L +E+AGL P +
Sbjct: 457 ETISTSQALQIAGRAGRFSSKFKEGEVTTMHRDDLPVLKEILSHAVDPIETAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R I P L PK L LE++H V
Sbjct: 577 APINKKQSFVCTSFLKFARQFSRDEPLTFSWVCRHISWP--LAAPKNIKDLVHLEAVHDV 634
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 635 LDLYLWLSYRFMDMFPD 651
>gi|395501390|ref|XP_003755078.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Sarcophilus harrisii]
Length = 779
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 236/375 (62%), Gaps = 8/375 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V S Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG
Sbjct: 275 MCSVNSPYEVAVIDEIQMIKDPARGWAWTRALLGLCAKEIHLCGEAAAIDIVTELMYTTG 334
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ YERL+P+ LN L S N++ GDCIV FS++ IY + + IE+RG +++Y
Sbjct: 335 EEVEVRKYERLTPITVLNHALESLDNLRPGDCIVCFSKNDIYTVSRQIEARGLQ-SAVIY 393
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K E+
Sbjct: 394 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEI 453
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QI+GRAGR+ SKF GEVT + EDL LL + L P +E+AGL P D
Sbjct: 454 EPISTSQALQISGRAGRFSSKFKEGEVTTMYPEDLKLLKEILNRPVEPIEAAGLHPTADQ 513
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+F
Sbjct: 514 IEMFAYHLPDTTLANLIDIFVDFSQVDGQYFVCNMDDFKFSADLIQHIPLSLRVRYVFGT 573
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + LQ PK L ELE+IH VLD
Sbjct: 574 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYARWPLQPPKNIKDLVELEAIHDVLD 633
Query: 354 LYVWLSFRLEESFPD 368
LY+WLS+R + FPD
Sbjct: 634 LYLWLSYRFVDMFPD 648
>gi|302761048|ref|XP_002963946.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
gi|300167675|gb|EFJ34279.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
Length = 633
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 253/420 (60%), Gaps = 14/420 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + AVIDE+QM + RG+++TRA L + A+E+HLCGDP+A+ L + + T
Sbjct: 197 MAVLTKPWSVAVIDEVQMTADEFRGWAWTRAFLALRADEVHLCGDPSALELYKTLCAATC 256
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ YER PL + G+F I+ GDC+V FSR I+++K IE R KH C +V
Sbjct: 257 DEFVEHHYERFKPLTIDRTSAKGNFDFIEAGDCVVAFSRKEIFQVKLEIEQRTKHKCCVV 316
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETRT+QA FND SS +DVLVASDAIGMGLNLNI R+IF+++ KF+G + +
Sbjct: 317 YGALPPETRTQQAKLFNDPSSGYDVLVASDAIGMGLNLNIRRVIFNSLDKFNGEQRIPVP 376
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+VKQIAGRAGR GS +P G+VT L + D+P L + + +P SAGLFP F+ + ++
Sbjct: 377 ASQVKQIAGRAGRRGSLYPEGQVTTLYASDIPYLVECMKQPFEDAPSAGLFPVFEQLELF 436
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPV 298
+ PD + +L+ F E+ +L YF + + KVA +D + L L ++Y FC +PV
Sbjct: 437 ASQLPDITFSQLLDRFSEHCRLDGTYFLCKNDNLKKVAAALDAIGGLSLEDEYNFCFAPV 496
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT----QAALRELESIHKVLDL 354
+ D S L +FA+ YS+K V+L ++ +P+ A + +LE+ H++L +
Sbjct: 497 NSRDPKSMGSLQRFASAYSRKIPVRL-------SMGMPQRTASDNAGIYDLETRHQLLSM 549
Query: 355 YVWLSFRL-EESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSR 413
Y+WLS +FP+R AA + + ++ E L ++ R ++ R + + R
Sbjct: 550 YLWLSQHFPAPAFPERHQAAEMASKIAEMLGESLVLFTGEEARKRQEEMREREHGGGCGR 609
>gi|302769107|ref|XP_002967973.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
gi|300164711|gb|EFJ31320.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
Length = 633
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 244/395 (61%), Gaps = 15/395 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + AVIDE+QM + RG+++TRA L + A+E+HLCGDP+A+ L + + T
Sbjct: 197 MAVLTKPWSVAVIDEVQMTADEFRGWAWTRAFLALRADEVHLCGDPSALELYKTLCAATC 256
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ YER PL + G+F I+ GDC+V FSR I+++K IE R KH C +V
Sbjct: 257 DEFVEHHYERFKPLTIDRTSAKGNFDFIEAGDCVVAFSRKEIFQVKLEIEQRTKHKCCVV 316
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETRT+QA FND SS +DVLVASDAIGMGLNLNI R+IF+++ KF+G + +
Sbjct: 317 YGALPPETRTQQAKLFNDPSSGYDVLVASDAIGMGLNLNIRRVIFNSLDKFNGEQRIPVP 376
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+VKQIAGRAGR GS +P G+VT L + D+P L + + +P SAGLFP F+ + ++
Sbjct: 377 ASQVKQIAGRAGRRGSLYPEGQVTTLYASDIPYLVECMKQPFEDAPSAGLFPVFEQLELF 436
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPV 298
+ PD + +L+ F E+ +L YF + + KVA +D + L L ++Y FC +PV
Sbjct: 437 ASQLPDITFSQLLDRFSEHCRLDGTYFLCKNDNLKKVAAALDAIGGLSLEDEYNFCFAPV 496
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT----QAALRELESIHKVLDL 354
+ D S L +FA+ YS+K V+L ++ +P+ A + +LE+ H++L +
Sbjct: 497 NSRDPKSMGSLQRFASAYSRKIPVRL-------SMGMPQRTASDNAGIYDLETRHQLLSM 549
Query: 355 YVWLSFRL-EESFPDRELAASQKA-ICSMLIEEFL 387
Y+WLS +FP+R AA + I ML E +
Sbjct: 550 YLWLSQHFPAPAFPERHQAAEMASKIAEMLGESLV 584
>gi|260787114|ref|XP_002588600.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
gi|229273765|gb|EEN44611.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
Length = 750
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 249/399 (62%), Gaps = 12/399 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ Y+ AV+DEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 236 MTNIHQPYEVAVVDEIQMIKDPQRGWAWTRALLGLCAEEIHLCGEPAAIDLVTEMMLSTG 295
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ L L PLGS +N++ GD IV FS+ I++L + IE+ GK C+++Y
Sbjct: 296 EELEVRRYKRLTGLTYLKEPLGSLNNLRPGDAIVCFSKADIFQLSRQIEAMGKE-CAVIY 354
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FN+ +LVA+DAIGMG+NL+I R+IF+ T+ + E+
Sbjct: 355 GSLPPGTKLAQAKKFNNPDDPCKILVATDAIGMGINLSIKRVIFNSLIKPTLNEKGEKEM 414
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+L+ + QI GRAGR+G+ F GEVT + EDL LH + +P +E+AGL P +
Sbjct: 415 DNLSTSQALQIGGRAGRFGTHFQDGEVTTMHKEDLQTLHDIVQQPVEPIEAAGLHPTAEQ 474
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
+ M++ PD+S+ +++ F+ A++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 475 VEMFAYQLPDASMSNLIDIFINLAQVDSRYFVCNIEDFKFLADMIQHIPLNLRARYVFCC 534
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R I P + +P+T L LESIH V
Sbjct: 535 APINKKQPFLCTSFLKFARQFSRGEPITFDWVCRLIGWP--VAMPRTIRELMYLESIHDV 592
Query: 352 LDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
LD+Y+WLS+R + FPD L + +LI+E + R+
Sbjct: 593 LDVYLWLSYRFMDMFPDGGLIRMIQRELDLLIQESVYRI 631
>gi|426255672|ref|XP_004021472.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Ovis aries]
Length = 787
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EDVEVRTYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 637
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 638 LYLWLSYRFLDMFPDASL 655
>gi|221042840|dbj|BAH13097.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 147 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 206
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 207 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 265
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 266 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 325
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 326 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 385
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 386 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 445
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 446 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 504
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 505 DLYLWLSYRFMDMFPDASL 523
>gi|332639894|pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 233 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 292
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 293 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 351
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 411
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 472 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 531
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 532 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 590
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 591 DLYLWLSYRFMDMFPDASL 609
>gi|148700154|gb|EDL32101.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 551
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 240/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 50 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTG 109
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 110 EEVEVQKYERLTPISVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 168
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 169 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 228
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F G+VT + +DL LL L P +++AGL P +
Sbjct: 229 EPITTSQALQIAGRAGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQ 288
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 289 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 348
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 349 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 407
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L S + +I+E
Sbjct: 408 DLYLWLSYRFIDMFPDSSLVRSLQKELDAIIQE 440
>gi|397489940|ref|XP_003815969.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
paniscus]
Length = 786
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
>gi|119574700|gb|EAW54315.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 788
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 280 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 339
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 340 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 398
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 399 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 458
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 459 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 518
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 519 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 578
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 579 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 637
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 638 DLYLWLSYRFMDMFPDASL 656
>gi|114630826|ref|XP_521497.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
troglodytes]
gi|410215456|gb|JAA04947.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410255430|gb|JAA15682.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410336055|gb|JAA36974.1| suppressor of var1, 3-like 1 [Pan troglodytes]
Length = 786
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
>gi|2801555|gb|AAB97370.1| putative ATP-dependent mitochondrial RNA helicase [Homo sapiens]
Length = 786
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
>gi|31543667|ref|NP_003162.2| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Homo
sapiens]
gi|74759699|sp|Q8IYB8.1|SUV3_HUMAN RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|23273588|gb|AAH36112.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Homo sapiens]
gi|119574699|gb|EAW54314.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Homo
sapiens]
gi|123980202|gb|ABM81930.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|123995015|gb|ABM85109.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|158261855|dbj|BAF83105.1| unnamed protein product [Homo sapiens]
Length = 786
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
>gi|431904159|gb|ELK09581.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pteropus alecto]
Length = 785
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 241/390 (61%), Gaps = 6/390 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAKEVHLCGEAAAIDLVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRNYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLLKPSVNEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L +P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLRLLKEILNKPVDPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
+P++ L QFA Y + + + L PK L +LE++H VLDLY
Sbjct: 578 APINKKQPFVCSSLLQFARVYRRTALASWLRRYMKWPLLPPKNIKDLMDLEAVHDVLDLY 637
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEE 385
+WLS+R + FPD L + +I+E
Sbjct: 638 LWLSYRFIDMFPDASLVRDLQKELDGIIQE 667
>gi|63087685|emb|CAI92124.1| SUV3L1 protein [Mus musculus]
Length = 779
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 240/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVQKYERLTPISVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F G+VT + +DL LL L P +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L S + +I+E
Sbjct: 636 DLYLWLSYRFIDMFPDSSLVRSLQKELDAIIQE 668
>gi|440896794|gb|ELR48623.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos grunniens
mutus]
Length = 789
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG
Sbjct: 281 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTG 340
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 341 EDVEVRTYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 399
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 400 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEI 459
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 460 EPITTSQALQIAGRAGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQ 519
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 520 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 579
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 580 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 639
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 640 LYLWLSYRFLDMFPDASL 657
>gi|355722682|gb|AES07652.1| suppressor of var1, 3-like 1 [Mustela putorius furo]
Length = 764
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + YD AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 257 MCSVTTPYDVAVIDEIQMIRDPGRGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTG 316
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 317 EEVEVRNYERLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 375
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 376 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEREI 435
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 436 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQ 495
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 496 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 555
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 556 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 615
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 616 LYLWLSYRFIDMFPDASL 633
>gi|194042314|ref|XP_001928933.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Sus
scrofa]
Length = 789
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 281 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAKEIHLCGESAAIDLVTELMYTTG 340
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 341 EDVEVRTYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 399
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 400 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEREI 459
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT + EDL LL + L P +++AGL P +
Sbjct: 460 EPITTSQALQIAGRAGRFSSKFKEGEVTTMHREDLNLLKEILSRPVDPIKAAGLHPTAEQ 519
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 520 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 579
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 580 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 639
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 640 LYLWLSYRFIDMFPDASL 657
>gi|296220503|ref|XP_002756336.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Callithrix jacchus]
Length = 786
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 236/377 (62%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVQDYKRLTPISVLDRALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L QFA YS+ + R I P L PK L +LE+IH V
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRHIKWP--LLPPKNIKDLVDLEAIHDV 635
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 636 LDLYLWLSYRFMDMFPD 652
>gi|31088872|ref|NP_852088.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Mus
musculus]
gi|81912937|sp|Q80YD1.1|SUV3_MOUSE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|29612530|gb|AAH49796.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Mus musculus]
gi|148700153|gb|EDL32100.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 779
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 240/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVQKYERLTPISVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F G+VT + +DL LL L P +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L S + +I+E
Sbjct: 636 DLYLWLSYRFIDMFPDSSLVRSLQKELDAIIQE 668
>gi|449268993|gb|EMC79805.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Columba
livia]
Length = 588
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 235/373 (63%), Gaps = 6/373 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+PAA+ L+ +++ TG
Sbjct: 186 MCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEPAAIDLVTELMYTTG 245
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+PL L+ L S N++ GDC+V FS++ IY + + IE+RG C+++Y
Sbjct: 246 EEVEVRNYKRLTPLTVLDYALESLDNLRPGDCVVCFSKNDIYSVSRQIEARGLE-CAVIY 304
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+ T+ + E+
Sbjct: 305 GSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEI 364
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGRYGS F GEVT + EDL L + L EP P +++AGL P +
Sbjct: 365 DSITTSQALQIAGRAGRYGSSFKQGEVTTMHREDLAQLKEILREPVPPVKAAGLHPTPEQ 424
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 425 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 484
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
+P++ + L + + + +K T L PK L LE++H V DLY
Sbjct: 485 APLNRKEPFVCTTLLKVSYFFLQKVTFAWLCRHTKWPLAAPKNIKELVHLEAVHDVFDLY 544
Query: 356 VWLSFRLEESFPD 368
+WLS+R + FPD
Sbjct: 545 LWLSYRFMDMFPD 557
>gi|149038689|gb|EDL92978.1| suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 632
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 241/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 134 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTG 193
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 194 EEVEVQKYERLTPISVLDRALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 252
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 253 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 312
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F GEVT + +DL LL + L P +++AGL P +
Sbjct: 313 EPITTSQALQIAGRAGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQ 372
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 373 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 432
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 433 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 491
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD S + ++I+E
Sbjct: 492 DLYLWLSYRFIDMFPDSSFVRSLQKELDVIIQE 524
>gi|60223057|ref|NP_001012480.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Rattus
norvegicus]
gi|81909565|sp|Q5EBA1.1|SUV3_RAT RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|59808213|gb|AAH89883.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 776
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 241/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVQKYERLTPISVLDRALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F GEVT + +DL LL + L P +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD S + ++I+E
Sbjct: 636 DLYLWLSYRFIDMFPDSSFVRSLQKELDVIIQE 668
>gi|383421101|gb|AFH33764.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
gi|384949046|gb|AFI38128.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
Length = 787
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 398 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L P+ L +LE++H VL
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPRNIKDLMDLEAVHDVL 636
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 637 DLYLWLSYRFMDMFPDASL 655
>gi|355562538|gb|EHH19132.1| hypothetical protein EGK_19777 [Macaca mulatta]
gi|355782877|gb|EHH64798.1| hypothetical protein EGM_18109 [Macaca fascicularis]
Length = 789
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 281 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 340
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 341 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 399
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 400 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 459
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 460 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQ 519
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 520 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCT 579
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L P+ L +LE++H VL
Sbjct: 580 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPRNIKDLMDLEAVHDVL 638
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 639 DLYLWLSYRFMDMFPDASL 657
>gi|109089488|ref|XP_001110593.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Macaca mulatta]
Length = 787
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 398 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L P+ L +LE++H VL
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPRNIKDLMDLEAVHDVL 636
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 637 DLYLWLSYRFMDMFPDASL 655
>gi|417404612|gb|JAA49050.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Desmodus rotundus]
Length = 786
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 239/379 (63%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L +TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYMTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRNYKRLTPICVLDQALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 398 GSLPPGTKLAQAKKFNDPEDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLRLLKEILNRPVDPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ +YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGHYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 636
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 637 DLYLWLSYRFIDMFPDASL 655
>gi|344275103|ref|XP_003409353.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Loxodonta africana]
Length = 787
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 239/393 (60%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ+Y RL+P+ L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVQNYNRLTPISVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT + EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSKFKEGEVTTMHREDLNLLKEILNRPVEPIRAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H +L
Sbjct: 578 APINKKQPFICSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLVDLEAVHDIL 636
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L + +I+E
Sbjct: 637 DLYLWLSYRFMDMFPDAGLIRDLQKELDGIIQE 669
>gi|115938145|ref|XP_786336.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 863
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 240/393 (61%), Gaps = 12/393 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V Y+ AVIDEIQML +RG+++TRALLG+ A E+HLCG+ AA+ L++Q+ TG
Sbjct: 314 MTSVSQPYEVAVIDEIQMLRDPSRGWAWTRALLGVNAKEIHLCGEQAAIDLVKQLTLSTG 373
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+++++ Y+RL+PL L+ PL + N++ GDCIV FS++ +Y + + +E+ GK C+++Y
Sbjct: 374 DELEIREYKRLTPLQILDQPLDNLENVRPGDCIVAFSKNDLYSISRQLEAMGKE-CAVIY 432
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM-----KKFDGVEL 175
GSLPP + QA +FND +LVA+DAIGMGLNL+I R+IF ++ + E+
Sbjct: 433 GSLPPGAKLSQAAKFNDPDDPCKILVATDAIGMGLNLSIKRVIFKSLIRPYINEKGEKEM 492
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
LT + QIAGRAGR+ ++F GE T +DLPLL + L P +E+ GL P +
Sbjct: 493 HRLTTSQALQIAGRAGRFRTQFEEGEATTFHGDDLPLLKEILANPVEKIEAGGLHPTAEQ 552
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I +++ PD++L ++E F+ + + +NYF N ++ +A +I +PL L +Y+FC
Sbjct: 553 IELFAYHLPDATLSNLIEIFINLSIVEKNYFVCNVDDFKFLADMIQHVPLHLRARYVFCC 612
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA YS+ + R + P L VPK L LE++H V
Sbjct: 613 APINRKLPFICTMFLKFARQYSRNQPITFDWFCRSVGWP--LAVPKNIRDLMHLEAVHDV 670
Query: 352 LDLYVWLSFRLEESFPDRELAASQKAICSMLIE 384
+DLY+WLS+R + FPD L +A +I+
Sbjct: 671 MDLYLWLSYRFMDMFPDTALIQDVQAELDHIIQ 703
>gi|332218176|ref|XP_003258235.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Nomascus leucogenys]
Length = 781
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 237/380 (62%), Gaps = 12/380 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAKEVHLCGEPAAIDLVTELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ +DL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHKDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N + A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMADFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L QFA YS+ + R I P L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIRWP--LLPPKNIKDLMDLEAVHDV 634
Query: 352 LDLYVWLSFRLEESFPDREL 371
LDLY+WLS+R + FPD L
Sbjct: 635 LDLYLWLSYRFMDMFPDASL 654
>gi|395820606|ref|XP_003783654.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Otolemur garnettii]
Length = 785
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 238/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 279 MCSITTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRNYERLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIKRIIFYSLMKPTVNEKGEREI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ +DL LL + L P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNRDDLGLLKEILNRPVDPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLVPPKNIKDLMDLEAVHDVL 636
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 637 DLYLWLSYRFMDMFPDASL 655
>gi|410975257|ref|XP_003994050.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Felis
catus]
Length = 788
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 281 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 340
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 341 EEVEVRNYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 399
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 400 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEI 459
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 460 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLNLLKEILNRPVDPIKAAGLHPTAEQ 519
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 520 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 579
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 580 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 639
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 640 LYLWLSYRFIDMFPDASL 657
>gi|432106720|gb|ELK32372.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Myotis
davidii]
Length = 747
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 160/393 (40%), Positives = 241/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 239 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYTTG 298
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 299 EEVEVRNYTRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 357
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 358 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 417
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L +P +++AGL P +
Sbjct: 418 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLCLLKEILNKPVDPIKAAGLHPTAEQ 477
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 478 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNLDDFKFSAELIQHIPLSLRVRYVFCT 537
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L P L +LE++H VL
Sbjct: 538 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLHPPNNIKDLMDLEAVHDVL 596
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L + +I+E
Sbjct: 597 DLYLWLSYRFIDMFPDASLVRDLQKELDGIIQE 629
>gi|291404244|ref|XP_002718491.1| PREDICTED: suppressor of var1, 3-like 1 [Oryctolagus cuniculus]
Length = 787
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 160/394 (40%), Positives = 243/394 (61%), Gaps = 12/394 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDAARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EEVEVRHYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND S +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLLKPTVNEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNREDLRLLKEILNRPVEPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L QFA +S+ + R I P L PK L +LE++H V
Sbjct: 578 APINKKQPFVCSSLLQFARQFSRNEPLTFAWLRRYIRWP--LLPPKNIKELMDLEAVHDV 635
Query: 352 LDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
LDLY+WLS+R + FPD L + +I+E
Sbjct: 636 LDLYLWLSYRFMDMFPDASLVRDLQKELDGIIQE 669
>gi|57529853|ref|NP_001006498.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Gallus
gallus]
gi|82233802|sp|Q5ZJT0.1|SUV3_CHICK RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|53133368|emb|CAG32013.1| hypothetical protein RCJMB04_16a1 [Gallus gallus]
Length = 794
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 266 MCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMYTTG 325
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + + IE+RG C+++Y
Sbjct: 326 EEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQIEARGLE-CAVIY 384
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+ T+ + E+
Sbjct: 385 GSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEI 444
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+GS F GEVT + +DL L + L E P +++AGL P +
Sbjct: 445 DSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLLQLKEILSEAVPPVKAAGLHPTPEQ 504
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 505 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 564
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ + L +FA +S+ + + T L PK L LE++H V D
Sbjct: 565 APLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAVHDVFD 624
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 625 LYLWLSYRFMDMFPDAAL 642
>gi|194205953|ref|XP_001918024.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Equus
caballus]
Length = 786
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 235/375 (62%), Gaps = 8/375 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRTYKRLTPITVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 397 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEI 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSKFKEGEVTTMNREDLNLLREILNRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA +S+ + + + L PK L +LE++H VLD
Sbjct: 577 APINKKQPFVCSSLLQFARQFSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 636
Query: 354 LYVWLSFRLEESFPD 368
LY+WLS+R + FPD
Sbjct: 637 LYLWLSYRFIDMFPD 651
>gi|403273843|ref|XP_003928708.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 786
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 236/377 (62%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + +E RG +++Y
Sbjct: 339 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQVEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP + QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGAKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L QFA YS+ + R I P L PK L +LE+IH V
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRHIKWP--LLPPKNIKDLVDLEAIHDV 635
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 636 LDLYLWLSYRFMDMFPD 652
>gi|73952813|ref|XP_546136.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
isoform 1 [Canis lupus familiaris]
Length = 788
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 236/375 (62%), Gaps = 8/375 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 280 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 339
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV F+++ IY + + IE RG +++Y
Sbjct: 340 EEVEVRNYKRLTPISVLDHALESLDNLRPGDCIVCFNKNDIYSVSRQIEIRGLE-SAVIY 398
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 399 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEI 458
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 459 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLSLLKEILKRPVNPIKAAGLHPTAEQ 518
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 519 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 578
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 579 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 638
Query: 354 LYVWLSFRLEESFPD 368
LY+WLS+R + FPD
Sbjct: 639 LYLWLSYRFIDMFPD 653
>gi|326923432|ref|XP_003207940.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Meleagris gallopavo]
Length = 717
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 189 MCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMYTTG 248
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + + IE+RG C+++Y
Sbjct: 249 EEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQIEARGLE-CAVIY 307
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+ T+ + E+
Sbjct: 308 GSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEI 367
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+GS F GEVT + +DL L + L E P +++AGL P +
Sbjct: 368 DSITTSQALQIAGRAGRFGSSFKQGEVTTMHRDDLLQLKEILSESVPPVKAAGLHPTPEQ 427
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 428 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 487
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ + L +FA +S+ + + T L PK L LE++H V D
Sbjct: 488 APLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAVHDVFD 547
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 548 LYLWLSYRFMDMFPDAAL 565
>gi|428184255|gb|EKX53111.1| hypothetical protein GUITHDRAFT_84578 [Guillardia theta CCMP2712]
Length = 548
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 244/402 (60%), Gaps = 19/402 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ D AVIDE+QML RG+++TRALLG+ A E+HLCG+P A LI ++ +
Sbjct: 101 MADLDKVIDVAVIDEVQMLESNDRGWAWTRALLGLPAAEIHLCGEPRAQELITKLCDLCE 160
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+++V+ YERLS L N L GS NIQ GDCIV F R I++LK+ IE++ C +V
Sbjct: 161 DELEVKEYERLSSLSVANHSLEGSLRNIQRGDCIVAFGRSKIHQLKRDIEAKTPFRCCVV 220
Query: 120 YGSLPPETRTRQATRFNDASS-----EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
YGSLPP TR QA FN+ S FDVLVASDAIGMGLNL ISR++FS+++KFDG E
Sbjct: 221 YGSLPPLTRQEQAKLFNERGSFPNGQSFDVLVASDAIGMGLNLEISRVVFSSLRKFDGQE 280
Query: 175 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF- 233
R LT E++QI GRAGR+G+ G VT L ++DLPLL +S P + A L P
Sbjct: 281 ERLLTASEIRQIGGRAGRFGTNTVEGIVTSLHNKDLPLLKRSFKTELPQIAKACLRPEIV 340
Query: 234 ---DLIYMYSRLHP-----DS-SLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQL 283
D ++ + P DS SL L+ F + + ++F +E+ +A I+ +
Sbjct: 341 MLEDFVHSIRHVWPREEGEDSLSLDTALQLFKDFHQTESSFFLGTTIDELRDLAKTIESV 400
Query: 284 PLRLHEKYLFCISPVDMN-DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAAL 342
+ L +++ FC++P+D++ +D + A YS+K +V++ ++ T ++P T L
Sbjct: 401 KMPLTDRFSFCLAPIDLSKEDRRRAAFYEMARMYSEKRLVRISQVATFNN-RIPDTMFKL 459
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIE 384
RE E H +L+LY WL+ R E +F D E+ Q A S+LI+
Sbjct: 460 REAEETHVILELYAWLANRFENAFCDLEIVKRQIAKNSILIQ 501
>gi|47218714|emb|CAG05686.1| unnamed protein product [Tetraodon nigroviridis]
Length = 728
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 237/380 (62%), Gaps = 12/380 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+ AAV +++++ TG
Sbjct: 229 MCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGESAAVEFVRELMYTTG 288
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P L+ + S N++ GDCIV FS++ IY + + IE RG C+++Y
Sbjct: 289 EEVEVHTYQRLTPFTVLDQAVESLDNLRPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIY 347
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K + E +
Sbjct: 348 GSLPPGTKLSQAKKFNDPDDPCKILVATDAIGMGLNLSIKRIIFNSLVKPNINEKGEKQM 407
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ SKF GEVT L +DLP+L + L +E+AGL P +
Sbjct: 408 ETISTSQALQIAGRAGRFSSKFKEGEVTTLHRDDLPVLKEILSHSVDPIETAGLHPTAEQ 467
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 468 IEMFAYHLPDATLSNLVDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 527
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R + P L PK L LE++H V
Sbjct: 528 APINKKQPFVCTSFLKFARQFSRDEPLTFDWVCRHVNWP--LAAPKNIKDLVHLEAVHDV 585
Query: 352 LDLYVWLSFRLEESFPDREL 371
LDLY+WLS+R + FPD +
Sbjct: 586 LDLYLWLSYRFMDMFPDTAM 605
>gi|354475450|ref|XP_003499942.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Cricetulus griseus]
gi|344237682|gb|EGV93785.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Cricetulus
griseus]
Length = 779
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 232/379 (61%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDLGRGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVHKYERLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND S +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F GEVT + EDL LL + L +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGEVTTMYREDLALLKEILNRAVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFIDMFPDSNL 654
>gi|290980456|ref|XP_002672948.1| predicted protein [Naegleria gruberi]
gi|284086528|gb|EFC40204.1| predicted protein [Naegleria gruberi]
Length = 773
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/400 (42%), Positives = 245/400 (61%), Gaps = 14/400 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ S+ D AVIDEIQ++ RG+S+T+ALLG+ ANE+HLCG+ + LI+++ Q TG
Sbjct: 323 MADISSEIDVAVIDEIQLITDPDRGWSWTKALLGVRANEVHLCGEGRVLKLIEKLCQDTG 382
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+++V+ Y RL+ L + L SF++++ GDCIV FSR ++R+K IE +V
Sbjct: 383 DELEVKEYNRLTKLNITKQATLKSFNDLEKGDCIVCFSRKEVFRMKNEIEKSTNLRVCVV 442
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPP+TR QA FN S +DVLVA+DAIGMGLNLNI R+IFS +KFDG E+R LT
Sbjct: 443 YGGLPPQTRIIQAALFNHERSPYDVLVATDAIGMGLNLNIRRVIFSATEKFDGKEVRTLT 502
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES----AGLFPNFDL 235
E+KQI GRAGR+ S F GEVT + D ++H++ P LE AGLFP +
Sbjct: 503 PHEIKQIGGRAGRFNSAFEEGEVTSFRNGDCKVIHQA-FSYDPTLEEEALRAGLFPTDEQ 561
Query: 236 IYMYSRLHPDSS----LYGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLP-LRLHE 289
I +SR + + L IL F E ++++ YF EE +A +I + L E
Sbjct: 562 IDHFSRQFDNENHRVRLSTILAKFYEITQVNKGKYFMCEIEEKKDIANIIHPIENLTTAE 621
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIH 349
+ +F SP+D ++ + ++A YS+ V L + P T++ T L+ELE ++
Sbjct: 622 RMIFVKSPIDPDESLCKDMAFKWAKLYSEGKDVPLL-LPNPNTMKPINTLIKLKELEVMY 680
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
K L++Y WLS+RL E F +RE + + IC LIEE L++
Sbjct: 681 KCLNVYSWLSYRL-EPFKERERSFEYQEICRNLIEEALKQ 719
>gi|410912098|ref|XP_003969527.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Takifugu rubripes]
Length = 775
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/377 (40%), Positives = 236/377 (62%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+ AAV +++++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGESAAVDFVRELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P L+ + S ++ GDCIV FS++ IY + + IE RG C+++Y
Sbjct: 338 EEVEVHTYKRLTPFTVLDQAVESLDKLRPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
GSLPP T+ QA +FND + ++VA+DAIGMGLNL+I RIIF+++ K + E +
Sbjct: 397 GSLPPGTKLSQAKKFNDPNDPCKIMVATDAIGMGLNLSIKRIIFNSLVKPNINEKGEKHM 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ SKF GEVT L +DLP+L + L +ESAGL P +
Sbjct: 457 ETISTSQALQIAGRAGRFSSKFKEGEVTTLYRDDLPVLKEILSHSVDPIESAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLVDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R + P L PK L LE++H V
Sbjct: 577 APINKKQPFVCTSFLKFARQFSRDEPLTFDWVCRHVNWP--LAAPKNIKDLVHLEAVHDV 634
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 635 LDLYLWLSYRFMDMFPD 651
>gi|301755872|ref|XP_002913774.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Ailuropoda melanoleuca]
gi|281346957|gb|EFB22541.1| hypothetical protein PANDA_001610 [Ailuropoda melanoleuca]
Length = 790
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 236/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG
Sbjct: 282 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTG 341
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 342 EEVEVRNYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 400
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 401 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEI 460
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SK+ GEVT ++ EDL LL + L +++AGL P +
Sbjct: 461 EPITTSQALQIAGRAGRFSSKYKEGEVTTMNREDLSLLKEILNRRVDPIKAAGLHPTAEQ 520
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 521 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 580
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ L QFA YS+ + + + L PK L +LE++H VLD
Sbjct: 581 APINKKQPFVCSSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 640
Query: 354 LYVWLSFRLEESFPDREL 371
+Y+WLS+R + FPD L
Sbjct: 641 IYLWLSYRFIDMFPDASL 658
>gi|351700124|gb|EHB03043.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Heterocephalus
glaber]
Length = 786
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 236/377 (62%), Gaps = 11/377 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG
Sbjct: 280 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTG 339
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 340 EEVEVRNYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 398
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND S +L+A+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 399 GSLPPGTKLAQAKKFNDPSDPCKILLATDAIGMGLNLSIKRIIFYSLLKPTINEKGEKEI 458
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPMLESAGLFPNFD 234
+T + QIAGRAGR+ S+F GEVT ++ +DL LL L P P+ +GL P +
Sbjct: 459 EPITTSQALQIAGRAGRFSSQFKEGEVTTMNHKDLGLLKDILSRPVDPVKVKSGLHPTAE 518
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I M++ PD++L +++ F++ +++ +YF N ++ A +I +PL L +Y+FC
Sbjct: 519 QIEMFAYHLPDTTLSNLIDIFVDFSQVDGHYFVCNMDDFKFSAELIQHIPLSLRVRYVFC 578
Query: 295 ISPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 579 TAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLSPPKNIKDLVDLEAVHDV 637
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 638 LDLYLWLSYRFMDMFPD 654
>gi|402880625|ref|XP_003903899.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Papio
anubis]
Length = 787
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 230/379 (60%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++
Sbjct: 279 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMXXXX 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 XXXXVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND S +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 398 GSLPPGTKLAQAKKFNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSVNEKGEKEL 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT + EDL LL + L P + +AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSQFKEGEVTTMKHEDLSLLKEILKRPVDPITAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 518 IEMFAYHLPDTTLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCT 577
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L P+ L +LE++H VL
Sbjct: 578 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLAPRNIKDLMDLEAVHDVL 636
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 637 DLYLWLSYRFMDMFPDASL 655
>gi|380021234|ref|XP_003694476.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis florea]
Length = 725
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 239/379 (63%), Gaps = 15/379 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ + Y+ A+IDEIQ++ TRG+++TRALLG+ ANE+HLCG+ AA+PLIQ I TG
Sbjct: 268 MTNLQNVYEVAIIDEIQLIRDPTRGWAWTRALLGLAANEIHLCGESAAIPLIQSICLTTG 327
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+++ Y+RL+ L N L S NIQ GDCIV FSR+ I+ + KAIE G H +++Y
Sbjct: 328 ESVEIKEYKRLTTLEIENSALYSLKNIQPGDCIVCFSRNEIFTVSKAIEKMG-HKVAVIY 386
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND +LVA++AIGMGLNL+I RIIF T+ + +++
Sbjct: 387 GSLPPGTKLAQAAKFNDPKDPCKILVATNAIGMGLNLHIRRIIFYSLVQPTINEKGEIDI 446
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFD 234
++V QIAGRAGRYG+++ G VT SEDLPLL K LLE +P ++ AGL P D
Sbjct: 447 DTISVSSALQIAGRAGRYGTQWSKGFVTTYKSEDLPLL-KKLLEQTPQDIQQAGLHPTAD 505
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P++ L ++ F+ ++ ++ YF N ++ +A +I +PL L +YLF
Sbjct: 506 QIELYAYYLPNAPLSNLINIFIALCEVDDSLYFICNLDDFKFLADMIQHIPLPLSTRYLF 565
Query: 294 CISPVDMNDDISSQGLTQFATNYSKK---GIVQLR-EIFTPGTLQVPKTQAALRELESIH 349
C +PV+ ++ ++A SK I+ LR +I P Q+P T L LE I
Sbjct: 566 CCAPVNRKVPLTCSMFLKYARQCSKNEPVTILWLRQQIKWPP--QIPSTLVELLRLEGIF 623
Query: 350 KVLDLYVWLSFRLEESFPD 368
+LD+Y+WLS+R+ FPD
Sbjct: 624 DILDVYLWLSYRISNLFPD 642
>gi|307110287|gb|EFN58523.1| hypothetical protein CHLNCDRAFT_19567 [Chlorella variabilis]
Length = 681
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 160/391 (40%), Positives = 239/391 (61%), Gaps = 19/391 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTR------------GFSFTRALLGICANELHLCGDPAA 48
M ++ D AVIDEIQM+G ++R G+++TRAL+G ANE+HLCGD +A
Sbjct: 294 MVNMQRRVDVAVIDEIQMIGDESRQELCCCPGICCRGWAWTRALMGAPANEVHLCGDGSA 353
Query: 49 VPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 107
+PL+++I + G+ ++V +Y+R + L V +G +S +Q GDCIV FSR IY +K+
Sbjct: 354 LPLVRKICEEMGETLEVNTYDRFTTLEVEPGGLVGGYSAVQPGDCIVAFSRKDIYNIKQF 413
Query: 108 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 167
IE KH +VYG+LPPETR +QA FN+ + + V+VASDA+GMGLNLNI RIIF ++
Sbjct: 414 IEQETKHRACVVYGALPPETRRQQAKLFNEPDNAYRVMVASDAVGMGLNLNIRRIIFHSV 473
Query: 168 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPML--E 225
K +G + ++V +KQIAGRAGR S++P G TCL+ D+P L +++ P L
Sbjct: 474 NKREGGKQVPVSVSMIKQIAGRAGRRSSQWPKGLATCLNPTDVPRLQEAIDVPLDQLVTP 533
Query: 226 SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
+AGLFP F+ +++ PD +L F A L +YFF + V++ A ++ +L L
Sbjct: 534 TAGLFPEFEHFEVFAGQRPDEPYSSLLGAFEREALLDSSYFFCKQDSVVQAAQLLGELGL 593
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALREL 345
+ + + FC++P +D + L FAT YSK V L +I P +VP + LR +
Sbjct: 594 SVKDMFSFCMAPASASDLRLAAALLHFATKYSKGLPVTL-DISIPN--RVPASTDELRHM 650
Query: 346 ESIHKVLDLYVWLSFRLE-ESFPDRELAASQ 375
E+ H+V L++WLS+R + E FP RE Q
Sbjct: 651 EAAHQVAMLWLWLSYRFDPEVFPQREKVGGQ 681
>gi|332639893|pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 231/376 (61%), Gaps = 10/376 (2%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
V + Y+ AVIDEIQ + RG+++TRALLG+CA E+HLCG+PAA+ L+ ++ TG++V
Sbjct: 236 VTTPYEVAVIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEV 295
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++YGSL
Sbjct: 296 EVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSL 354
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDL 178
PP T+ QA +FND + +LVA+DAIG GLNL+I RIIF ++ K EL +
Sbjct: 355 PPGTKLAQAKKFNDPNDPCKILVATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPI 414
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
T + QIAGRAGR+ S+F GEVT + EDL LL + L P + +AGL P + I
Sbjct: 415 TTSQALQIAGRAGRFSSRFKEGEVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEX 474
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC +P+
Sbjct: 475 FAYHLPDATLSNLIDIFVDFSQVDGQYFVCNXDDFKFSAELIQHIPLSLRVRYVFCTAPI 534
Query: 299 DMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
+ L QFA YS+ LR + L PK L +LE++H VLDLY
Sbjct: 535 NKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLXDLEAVHDVLDLY 593
Query: 356 VWLSFRLEESFPDREL 371
+WLS+R + FPD L
Sbjct: 594 LWLSYRFXDXFPDASL 609
>gi|414586894|tpg|DAA37465.1| TPA: ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 627
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 226/355 (63%), Gaps = 13/355 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RGF+++RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V
Sbjct: 278 YEVAVVDEIQMMADPVRGFAWSRAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQ 337
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG NI++GDC+V FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 338 YERFKPLVVEAKTLLGDLKNIRSGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPE 397
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVL+ASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 398 TRRQQAKLFNEQDNEYDVLIASDAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQI 457
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + AG+FP F+ + M++ P+
Sbjct: 458 AGRAGRRGSVYPDGLTTTFLKDDLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNL 517
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
S +L+ F ++ ++ + YF + + KVA +++++ L L ++Y FC +PV++ D +
Sbjct: 518 SFNDLLDKFRDSCRIDKTYFMCQQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKA 577
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELESIHKVLDLYV 356
L +FATNYS V + + +P+ A L +LE+ H+VL + +
Sbjct: 578 MYHLLRFATNYSHSRRVGI-------AMGIPRGSAKNFVELLDLETKHQVLSIRI 625
>gi|160773213|gb|AAI55210.1| MGC162283 protein [Danio rerio]
Length = 718
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 232/377 (61%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AAV I +++ TG
Sbjct: 276 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTG 335
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P N + S N++ GDCIV FS++ IY + + IE RG C+++Y
Sbjct: 336 EEVEVHNYKRLTPFSISNHAVESLDNLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIY 394
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD-----GVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K E+
Sbjct: 395 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEV 454
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ S F GEVT + +DLP+L + L +P + +AGL P +
Sbjct: 455 DTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQ 514
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P ++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 515 IEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 574
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R++ P L PK L LE++H V
Sbjct: 575 APINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWP--LSPPKNIKDLVHLEAVHDV 632
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 633 LDLYLWLSYRFMDMFPD 649
>gi|328776802|ref|XP_624007.3| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis mellifera]
Length = 736
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 161/383 (42%), Positives = 237/383 (61%), Gaps = 15/383 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ + YD AVIDEIQ++ RG+++TRALLG+ ANE+HLCG+ AA+P+IQ I T
Sbjct: 268 MANLQNVYDVAVIDEIQLICDPLRGWAWTRALLGLPANEIHLCGESAAIPIIQSICLTTS 327
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+++ Y+RL+PL N L S NIQ GDCIV FSR+ I+ + AIE G H +++Y
Sbjct: 328 ESVEIKEYKRLTPLEIENSALYSLKNIQAGDCIVCFSRNEIFTVSNAIEKMG-HEVAVIY 386
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QATRFND + +LVA++AIGMGLNL+I RIIF T+ K +++
Sbjct: 387 GSLPPGTKLAQATRFNDPNDPCKILVATNAIGMGLNLHIRRIIFYSLIQPTINKKGEIDI 446
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFD 234
++V QIAGRAGRYG+++ G VT EDL LL K LLE +P + GL P D
Sbjct: 447 STISVSTALQIAGRAGRYGTQWSKGFVTTYKPEDLSLL-KKLLEQTPEDIHQGGLHPTPD 505
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +YS P ++L ++ F+ +L ++ YF N ++ +A +I +PL L +YLF
Sbjct: 506 QIELYSYYLPKAALSNLINIFIALCELDDSLYFICNLDDFKFLADMIQHIPLPLSTRYLF 565
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALRELESIH 349
C +PV+ ++ ++A SK + + ++ +Q +P + L LE I+
Sbjct: 566 CCAPVNRKIPLTCTMFLKYARECSKNEPITI--LWLSNQIQWPPAIPTSLTELLRLEGIY 623
Query: 350 KVLDLYVWLSFRLEESFPDRELA 372
+LDLY+WLS+R+ FPD +L
Sbjct: 624 DILDLYLWLSYRISNLFPDGDLV 646
>gi|134133261|ref|NP_001077033.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Danio
rerio]
gi|160358711|sp|A4IG62.1|SUV3_DANRE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|134024870|gb|AAI34946.1| MGC162283 protein [Danio rerio]
Length = 763
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 232/377 (61%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AAV I +++ TG
Sbjct: 276 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTG 335
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P N + S N++ GDCIV FS++ IY + + IE RG C+++Y
Sbjct: 336 EEVEVHNYKRLTPFSISNHAVESLDNLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIY 394
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD-----GVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K E+
Sbjct: 395 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEV 454
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ S F GEVT + +DLP+L + L +P + +AGL P +
Sbjct: 455 DTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQ 514
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P ++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 515 IEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 574
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R++ P L PK L LE++H V
Sbjct: 575 APINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWP--LSPPKNIKDLVHLEAVHDV 632
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 633 LDLYLWLSYRFMDMFPD 649
>gi|242008382|ref|XP_002424985.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
gi|212508614|gb|EEB12247.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
Length = 681
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 238/377 (63%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + YD AVIDEIQM+ RG+++TRALLG+ A E+HLCG+ +AV L+ IL T
Sbjct: 264 MCSLENTYDVAVIDEIQMIKDNQRGWAWTRALLGLKAKEIHLCGEESAVDLVDSILCTTN 323
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ L L+ + S N+ GDCIV FS+ I+ + +A+E G ++ +++Y
Sbjct: 324 ENLEVKKYKRLTEL-KLDAAIESLKNVSPGDCIVCFSKRDIFNVTEALEKLGNNV-AVIY 381
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK----FDG-VEL 175
G+LPP T+ + +FND ++ F++LV++DAIGMGLNL I R++F +++K +G +E+
Sbjct: 382 GTLPPGTKYAECNKFNDPNNVFNILVSTDAIGMGLNLEIRRVVFYSLEKPVMNDNGIIEI 441
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFD 234
++V + QIAGRAGRYGS++ G VT +DLPLL K L E P P + SAGLFP D
Sbjct: 442 VPISVSQALQIAGRAGRYGSRYEKGYVTTFHKKDLPLLEKILSETPEPAM-SAGLFPTVD 500
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +YS P S+L +++ F+ + + ++ YF N + A +I+ +PL L KY+F
Sbjct: 501 QIELYSFYLPQSTLSNLMDIFINLSTVDDSMYFICNTNDFKIFADMIEHIPLSLRVKYIF 560
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV--PKTQAALRELESIHKV 351
C +PV+ + S +FA YS+ I+ + + V PK L ELE +H
Sbjct: 561 CSAPVNKKNQFSCSIFLKFAKMYSENSIISFQWLCKTINWPVSSPKNIKELIELEGVHDS 620
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 621 LDLYLWLSYRFPDYFPD 637
>gi|327277996|ref|XP_003223749.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Anolis carolinensis]
Length = 795
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 237/380 (62%), Gaps = 12/380 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 273 MCSVNTPYEVAVIDEIQMIKDPSRGWAWTRALLGLCAEEIHVCGEAAAINLVTELMYTTG 332
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P+ L+ L S + GDCIV FS++ IY + + IE+RG C+++Y
Sbjct: 333 EEVEVRTYKRLTPIKVLDEALESLDKLCPGDCIVCFSKNDIYSVSRQIEARGLE-CAVIY 391
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND ++VA+DAIGMGLNL+I RIIF+ T+ + E+
Sbjct: 392 GSLPPGTKLTQAKKFNDPGDPCKIMVATDAIGMGLNLSIKRIIFNSLVKPTVNEKGEKEM 451
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QI+GRAGR+ + F GEVT + +DLPLL + L + + +AGL P +
Sbjct: 452 DTITTSQALQISGRAGRFSTVFKEGEVTTMHRDDLPLLKEILSKSVDPILTAGLHPTAEQ 511
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 512 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNVDDFKFLADMIQHIPLNLRARYVFCT 571
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L +FA +S+ + R I P L P+ L LE++H V
Sbjct: 572 APINKKQPYVCTSLLKFARQFSRNEPLTFDWLCRHIHWP--LTPPRNIKDLVHLEAVHDV 629
Query: 352 LDLYVWLSFRLEESFPDREL 371
LDLY+WLS+R + FPD L
Sbjct: 630 LDLYLWLSYRFMDMFPDAAL 649
>gi|413918547|gb|AFW58479.1| hypothetical protein ZEAMMB73_533569 [Zea mays]
gi|413918551|gb|AFW58483.1| hypothetical protein ZEAMMB73_201464 [Zea mays]
gi|413918555|gb|AFW58487.1| hypothetical protein ZEAMMB73_960257 [Zea mays]
Length = 511
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 236/394 (59%), Gaps = 8/394 (2%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DE+QM+ RG ++TRALLG+ A E+HLCGD + + +I++I TGDD+ V
Sbjct: 114 YEVAVVDEVQMMADPVRGSAWTRALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQ 173
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV N G F NI++GD +V FSR I+ +K AIE+ H C ++YG+LPPE
Sbjct: 174 YERFKPLVVEENTLRGYFQNIRSGDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPE 233
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN +E+DVLVA+DA+GMGLNLNI R++F T+ K+DG + + VKQI
Sbjct: 234 TRRQQAELFNQEHNEYDVLVATDAVGMGLNLNIRRVVFYTLIKYDGEKTASVPASLVKQI 293
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T DL L + L EP E GLFP F+ + M++ P+
Sbjct: 294 AGRAGRRGSAYPHGLATTFKY-DLCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPEL 352
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDIS 305
+ +L + ++ + YF + + KVA +++ + L L +Y FC++PV+ + +
Sbjct: 353 TFNNLLNKLCDTCRIDDTYFICQHDNMKKVADMLEGVHGLSLKSRYGFCLAPVNTRNSEA 412
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA NYS+ V + + P TQ +LE+ H+VL +Y+WL+ E+
Sbjct: 413 MDHLLRFANNYSESHYVTM-GLEMPSGYATNDTQ--FLDLETKHQVLSMYLWLAQHFGED 469
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVK 398
+FP + A + + L+ + L + W KP+++
Sbjct: 470 NFPHVQEAQTMSTNIADLLGQSLAKGCW-KPQLR 502
>gi|413918542|gb|AFW58474.1| hypothetical protein ZEAMMB73_808258 [Zea mays]
Length = 441
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 236/394 (59%), Gaps = 8/394 (2%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DE+QM+ RG ++TRALLG+ A E+HLCGD + + +I++I TGDD+ V
Sbjct: 44 YEVAVVDEVQMMADPVRGSAWTRALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQ 103
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV N G F NI++GD +V FSR I+ +K AIE+ H C ++YG+LPPE
Sbjct: 104 YERFKPLVVEENTLRGYFQNIRSGDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPE 163
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN +E+DVLVA+DA+GMGLNL+I R++F T+ K+DG + + VKQI
Sbjct: 164 TRRQQAELFNQEHNEYDVLVATDAVGMGLNLSIRRVVFYTLIKYDGEKTASVPASLVKQI 223
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T DL L + L EP E GLFP F+ + M++ P+
Sbjct: 224 AGRAGRRGSAYPHGLATTFKY-DLCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPEL 282
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDIS 305
+ +L + ++ + YF + + KVA +++ + L L +Y FC++P++ + +
Sbjct: 283 TFNNLLNKLCDTCRIDDTYFICQHDNMKKVADMLEGVHGLSLKSRYGFCLAPMNTRNSEA 342
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL-EE 364
L +FA NYSK V + + P TQ +LE+ H+VL +Y+WL+ E+
Sbjct: 343 MDHLLRFANNYSKSHYVTMG-LEMPSGYATNDTQ--FLDLETKHQVLSMYLWLAQHFGED 399
Query: 365 SFPDRELAASQKAICSMLIEEFLERLGWQKPRVK 398
+FP + A + + L+ + L + W KP+++
Sbjct: 400 NFPHVQEAQTMSTNIADLLGQSLAKGCW-KPQLR 432
>gi|242046656|ref|XP_002400702.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
gi|215497634|gb|EEC07128.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
Length = 719
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/395 (39%), Positives = 235/395 (59%), Gaps = 13/395 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V YD AV+DEIQM+ RG+++TRALLG+ A E+HLCG+ AA+PL+Q IL G
Sbjct: 261 MAAVHCPYDVAVVDEIQMVRDPQRGWAWTRALLGLNAEEVHLCGEEAALPLVQGILNSVG 320
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+PL N L S ++ GDC+V FS++ I+++ IE +G C+++Y
Sbjct: 321 EEVEVRRYKRLTPLTVENRALESLDQVRPGDCLVCFSKNDIFQVSLQIEKQGLE-CAVIY 379
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
G LPP T+ QA++FND S +LVA+DAIGMGLNL+I R+IF ++ K E+
Sbjct: 380 GGLPPGTKLAQASKFNDPSHPCKILVATDAIGMGLNLSIGRVIFYSLVKPSLNERGEREM 439
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+GS+F G T +DLPLL + L P +E+AGL P +
Sbjct: 440 DTISTSQALQIAGRAGRFGSQFASGRATTFRPDDLPLLRQILAAPVERIEAAGLHPTAEQ 499
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P +SL +++ F+ K+ + YF N E +A +I +PL L +Y+FC
Sbjct: 500 IELFAYHLPHASLANLVDIFVSLCKVDASAYFMCNLEAFKFLADMIQHVPLPLRARYVFC 559
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
SP++ +FA YS+ + R + P VP+T L LE +
Sbjct: 560 CSPINQKMPFVCSMFLKFARQYSRNEPLTYEWLGRSVDWPPA--VPRTLVDLAHLEGVFD 617
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
VLDLY+WLS+R + FPD E + ++I++
Sbjct: 618 VLDLYLWLSYRFTDLFPDAEAVRGMQRELDLVIQQ 652
>gi|384250636|gb|EIE24115.1| hypothetical protein COCSUDRAFT_28627 [Coccomyxa subellipsoidea
C-169]
Length = 651
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/436 (37%), Positives = 249/436 (57%), Gaps = 34/436 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ D AV+DEIQ +G +RG+++TRAL G+ ANE+H+CGD +A+PL++ + G
Sbjct: 186 MTNLSKRVDVAVVDEIQQIGDDSRGWAWTRALQGLAANEIHMCGDGSALPLVRTLAHQMG 245
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIES-RGKHLCSI 118
++++V SYER +PL L + ++Q GDCIV FSR IY +K+ IE+ G+ +C +
Sbjct: 246 EELQVHSYERFTPLAIEAEGLARGYLDVQPGDCIVAFSRRDIYDIKQLIEAGTGQRVC-V 304
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
VYG+LPPE R QA FND S +DVLVASDA+GMGLNLNI RIIF T++K DG R +
Sbjct: 305 VYGALPPEMRRTQARLFNDPDSGYDVLVASDAVGMGLNLNIRRIIFHTLEKTDGSFARQI 364
Query: 179 TVPEVKQI--AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE--SAGLFPNFD 234
+ K + AGRAGR S + G VTCL+ D+P L +++ P L +AGLFP F+
Sbjct: 365 MATQTKGMLCAGRAGRRNSVYGQGLVTCLNRADIPRLQEAVATPLEALSTPTAGLFPEFE 424
Query: 235 LIYMYSRLHPDSSLYGILEH------------FLENAKLSENYFFANCEEVLKVATVIDQ 282
+ ++ + + IL F A++ Y F E V++ A ++ +
Sbjct: 425 QLEAFAGNQLEQDFHNILTRQAPLHTSLLSMLFAAEARVDGTYMFCKQESVIQAARLLSK 484
Query: 283 LP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA 341
+ L L E++ FC++P ++ + +++ L +FA Y+ K Q + P +VP+T
Sbjct: 485 VEGLSLQERFWFCMAPANLRNPVAAAALLRFAQKYAAK---QQVPVDVPWKDRVPQTSQE 541
Query: 342 LRELESIHKVLDLYVWLSFRLEESF----PDRELAASQKAICSMLIEEFLERLGWQKPRV 397
L +LE+ H+V+ L+VWLS R +E F P E Q I S++ E + G
Sbjct: 542 LCDLEAAHQVISLWVWLSHRFDEEFFVGRPRVEEMCEQ--IISIMSEGLQQMFG-----P 594
Query: 398 KKVTPRPKLNSAVVSR 413
+ PKL AV R
Sbjct: 595 TALLTNPKLQKAVCHR 610
>gi|156402846|ref|XP_001639801.1| predicted protein [Nematostella vectensis]
gi|156226931|gb|EDO47738.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 222/342 (64%), Gaps = 6/342 (1%)
Query: 34 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDC 92
G+ ++E+H+CG+ AV LI+++ + GD+ +V Y+RLS L L LG ++ GDC
Sbjct: 1 GVVSDEVHVCGEDTAVGLIKRLAKTCGDEFEVFHYDRLSQLQVLPYSLGGQLHQVRPGDC 60
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
IV FS+ +++L++ IE C+IVYG LPP TR QA +FN+ E +L+ASDAIG
Sbjct: 61 IVAFSQRELFKLRQRIEKAKVTKCAIVYGGLPPATRVEQAAKFNNPDDEHKILIASDAIG 120
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 212
MGLNLNI RIIF M+KFDG + LT VKQIAGRAGRYGS++P GEVT L + LP
Sbjct: 121 MGLNLNIKRIIFHAMEKFDGQSVTQLTASHVKQIAGRAGRYGSEYPKGEVTTLYASSLPT 180
Query: 213 LHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCE 271
L K + +PS ++ AGL P+ + I M S P+++L +++ FL+ A+L ENYF + E
Sbjct: 181 LKKLMSQPSDEVQRAGLSPSVEQIEMLSHQLPNATLGDLVDLFLDVAQLDGENYFMCDLE 240
Query: 272 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK---GIVQLREIF 328
V +A +++ +PL + E+Y C +PV N +S+ + +FA S+K ++ ++E+
Sbjct: 241 NVQYLAELVEGIPLTIWEQYSICQAPVSRNRTLSASVIVEFARRVSEKRETKVIDVKEMV 300
Query: 329 TPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRE 370
+ +PK+ L+++E++H+V D+Y+WLS+R E F D+E
Sbjct: 301 RWPPV-MPKSLKTLQDVEAVHEVCDVYLWLSYRFPEVFTDQE 341
>gi|405976562|gb|EKC41064.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Crassostrea gigas]
Length = 711
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 237/399 (59%), Gaps = 9/399 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++YD AVIDEIQML RG ++TR LLG+CA E+HLCG+ AAV L+++I+ TG
Sbjct: 283 MTSTTTEYDVAVIDEIQMLRDMERGGAWTRVLLGLCAREIHLCGEEAAVNLVKRIVNTTG 342
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++V+ YERL+ L N PL S + GDCIV FS+ IY++ +E G H +++Y
Sbjct: 343 DTLEVRKYERLNRLRFDNNPLMSLKEVTAGDCIVCFSKRTIYKVCIELEKLG-HNVAVIY 401
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT- 179
GSLPP T+ QA +FND VLVA+DAIGMG+NL I RIIF ++K E DL
Sbjct: 402 GSLPPATKLAQAQKFNDPKDPCKVLVATDAIGMGINLKIKRIIFLEIQKLTRDENGDLNY 461
Query: 180 --VP--EVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+P + KQIAGRAGR+GS VG VT + + L + + + +++AGL P +
Sbjct: 462 SFIPTHQAKQIAGRAGRFGSGENVGLVTAHTEKKMIELKEIIQQDLEDIQAAGLLPTVEQ 521
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
+ + P+ S+ IL F + + S+ YF E ++AT+ID + L L +Y FC
Sbjct: 522 LEQFYFYLPNFSMRDILGIFQYMSTVNSDMYFLCGLENFKELATLIDHIDLPLRVRYQFC 581
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF--TPGTLQVPKTQAALRELESIHKVL 352
++PV + S T+FA +YS + + + T +PKT +L +LE +H+++
Sbjct: 582 LAPVSVKSPFLSTLFTKFARSYSNGTPIDCKWLLLQTDYPWILPKTIKSLAKLEEVHEIM 641
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLG 391
D+Y+WLSFR EE F DRE + +IEE +E+LG
Sbjct: 642 DMYLWLSFRFEEIFCDRESVRGVQKQLEEVIEEGVEKLG 680
>gi|224141379|ref|XP_002324050.1| predicted protein [Populus trichocarpa]
gi|222867052|gb|EEF04183.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 221/369 (59%), Gaps = 33/369 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + +++ I TGD++ Q
Sbjct: 84 YDVAVIDEIQMMADSCRGYAWTRALLGLKADEIHLCGDPSVLDIVKNICSETGDELYEQH 143
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 144 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPE 203
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FND +E+DVLVASDA+GMGLNLNI R++F+++ K++G ++ + +VKQI
Sbjct: 204 TRRQQANLFNDQDNEYDVLVASDAVGMGLNLNIRRVVFNSLSKYNGDKIVPVPPSQVKQI 263
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS++P G T L EDL L L +P
Sbjct: 264 AGRAGRRGSRYPDGLTTTLQLEDLDYLIDCLKQP-------------------------- 297
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDIS 305
+ +LE F EN +L +YF + + KVA +++++ L L +++ FC +PV+ D +
Sbjct: 298 --FHLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNFRDPKA 355
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
L +FA YS K V + G+ + A L++LE+ H+VL +Y+WLS ++
Sbjct: 356 MYHLHRFAALYSIKVPVSIAMGMPKGS---ARNDAELQDLETKHQVLSVYLWLSQHFKKE 412
Query: 366 FPDRELAAS 374
+ +AA
Sbjct: 413 KARKRVAAG 421
>gi|412989959|emb|CCO20601.1| predicted protein [Bathycoccus prasinos]
Length = 745
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/435 (38%), Positives = 236/435 (54%), Gaps = 48/435 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M DV DCAVIDEI ++G RG++FTRALLG A E+HLCGD + V LI++I + TG
Sbjct: 243 MVDVNKVVDCAVIDEIHLIGDDFRGYAFTRALLGTPALEVHLCGDTSCVELIEKICKDTG 302
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFS------NIQTGDCIVTFSRHAIYRLKKAIESRGKH 114
D +++++YERLSPL NV FS NI+ GDC V FSR A+Y LK IE R
Sbjct: 303 DKLRIRNYERLSPL---NVAEEHFSKKRLEQNIEKGDCFVAFSRKAVYALKSEIERRVPL 359
Query: 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
++YG LPPE R+RQA FN S +D+L+ASDAIGMGLNLNI RIIF+ + KFDGVE
Sbjct: 360 RACVIYGGLPPEARSRQAELFNKPDSGYDLLIASDAIGMGLNLNIRRIIFNELTKFDGVE 419
Query: 175 LRDLTVPEVKQIAGRAGRYGSKF---PVGEVTCLDS------------------------ 207
+R L+ PEVKQIAGRAGRY + G VT D
Sbjct: 420 IRQLSSPEVKQIAGRAGRYKMSYYDKGGGVVTTTDDGMVLDGNRKNGDNAKSDIIKSSGV 479
Query: 208 EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF 267
L + L P L++AGL P F+ I Y ++L ++ +A + + Y
Sbjct: 480 SGLQFIQNQLNAPVEALKTAGLAPTFEQILEYCSKVEGATLEDAMKALSSDAIVPKYYKM 539
Query: 268 ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI 327
+EV+++A ++ L + + + Y F +SP ++ S + L FA + +G V ++ I
Sbjct: 540 RKSDEVIRLAKYLENLGMEIEDHYTFSVSPTSVDCLHSMKTLMNFAKAFLNEGHVSVKLI 599
Query: 328 FTPGTLQVPKTQA------------ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQ 375
K++A L LE H+ DLY+W + R+ FP+ LA +
Sbjct: 600 PKSVNKHDRKSRADAQTRMNQRSVGILATLEEQHRAYDLYLWFARRMSAQFPEYSLAEAL 659
Query: 376 KAICSMLIEEFLERL 390
+ +C+ I+ L++L
Sbjct: 660 RVMCAHSIDAELQKL 674
>gi|312374358|gb|EFR21928.1| hypothetical protein AND_16014 [Anopheles darlingi]
Length = 766
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 231/379 (60%), Gaps = 9/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQ+L RG+++TRA LG+ A E+H+CG+P L+Q++ + T
Sbjct: 261 MTSINTPYEVAVIDEIQLLKDVGRGWAWTRAFLGLMAEEIHVCGEPGTADLLQKLCETTH 320
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ ++V++Y+RL+P + L + N+Q GDCIV FS++ IY + + IE+RGK + +++Y
Sbjct: 321 ESMEVRNYKRLTPFHIEDQALITLDNVQPGDCIVCFSKNDIYSVSREIEARGKEV-AVIY 379
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ VLVA+DAIGMGLNL+I R+IF TM + E+
Sbjct: 380 GGLPPGTKLAQAAKFNDPNNSCKVLVATDAIGMGLNLSIRRVIFYSMIKPTMNQKGEKEM 439
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V + QIAGRAGRYG K+ G VT +EDLP L L + L AGL P D+
Sbjct: 440 DTISVSQALQIAGRAGRYGMKWEEGFVTTFKAEDLPTLRGILAQTPEPLSQAGLHPTADM 499
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+++L ++E F+ + + ++ YF N E+ +A I +PL L +Y+FC
Sbjct: 500 IELYAYHLPNATLSNLMEIFVSLSTVDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFC 559
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ N ++A YS+ V + Q+P+T L LE++ VL
Sbjct: 560 CAPINRNMPFVCSMFLKYARRYSRNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVL 619
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD +L
Sbjct: 620 DLYLWLSYRFPDLFPDEKL 638
>gi|307185680|gb|EFN71602.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Camponotus floridanus]
Length = 719
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 244/401 (60%), Gaps = 15/401 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ S+Y+ AVIDEIQ++ +RG+++TRALLGI A+E+HLCG+ AA+ L++ I G
Sbjct: 251 MVNLNSNYEVAVIDEIQLMRDLSRGWAWTRALLGIPADEIHLCGEAAAIDLVKAICFSAG 310
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+ L N LGS NI+ GDCIV FS++ I+ + +++ESRG + +++Y
Sbjct: 311 ENVEVRRYKRLTNLEIENEALGSLINIKPGDCIVCFSKNDIFTVSRSLESRGTEV-AVIY 369
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND + VLVA++AIGMGLNL+I RIIF T + E+
Sbjct: 370 GSLPPGTKLAQAAKFNDPKNSCKVLVATNAIGMGLNLHIRRIIFYSLIQPTYNEKGEKEM 429
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFD 234
L+V QIAGRAGRYG+ + G VT EDLP L K+LL+ +P ++ AGL P D
Sbjct: 430 DILSVSAALQIAGRAGRYGTAWDTGYVTTFKREDLPTL-KNLLKQTPEVITQAGLHPTAD 488
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P+S+L +++ F+ + ++ YF N ++ +A +I +PL L +Y+F
Sbjct: 489 QIELYAYHLPNSTLSNLIDIFISLCTVDDSLYFMCNLDDFKFLADMIQHVPLPLRTRYVF 548
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIH 349
C +P++ +FA YSK + + I P PKT L LE I
Sbjct: 549 CCAPINRKLPYVCTMFLKFARQYSKNDAITFSWLCQHIGWP--FATPKTILDLVHLEGIF 606
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WLS+R + FPD + + +IEE + RL
Sbjct: 607 DVLDLYLWLSYRFMDLFPDARMVRDIQKELDAVIEEGVVRL 647
>gi|346472467|gb|AEO36078.1| hypothetical protein [Amblyomma maculatum]
Length = 674
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 236/395 (59%), Gaps = 13/395 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + YD AVIDEIQM+ RG+++TRALLG+ A E+HLCG+ AAV L++ +L G
Sbjct: 214 MATVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKEVHLCGEAAAVGLVRTLLASLG 273
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ LV N L S IQ GDCIV FS+ IY++ IE +G C+++Y
Sbjct: 274 EELEVRKYKRLTQLVVENRALESLEKIQPGDCIVCFSKSDIYQVSLHIERQGLE-CAVIY 332
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
G LPP T+ QA +FND + VLVA+DAIGMGLNL+I R+IF ++ K +L
Sbjct: 333 GGLPPGTKLAQAHKFNDPAHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPALNERGERQL 392
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+GS+F VG VT + +DLP L + L P ++ AGL P +
Sbjct: 393 DTISSSQALQIAGRAGRFGSRFEVGRVTTMKPQDLPALKQILAAPVEQIQVAGLHPTAEQ 452
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P ++L +++ F+ K+ + +YF N E +A +I +PL L +Y+FC
Sbjct: 453 IELFAYHLPHATLANLVDIFVSLCKVDASSYFMCNLEGFKFLADMIQHVPLPLRARYVFC 512
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
SP++ +FA YS+ + R I P VPK L LE++
Sbjct: 513 CSPINQKMPFVCSMFLKFARQYSRNEPLTCQWLGRNIGWP--FAVPKAIMDLVHLEAVFD 570
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
VLDLY+WLS+R + FPD E + + ++I++
Sbjct: 571 VLDLYLWLSYRFPDLFPDAEAVRAMQQELDLIIQK 605
>gi|345309135|ref|XP_003428795.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial-like [Ornithorhynchus anatinus]
Length = 778
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 225/374 (60%), Gaps = 7/374 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 259 MCSVTTPYEVAVIDEIQMIRDLSRGWAWTRALLGLCAEEIHVCGEAAAINLVTELMYTTG 318
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+P L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 319 EEVEVRNYKRLTPFTVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 377
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF----DGVELR 176
GSLPP T+ QA +FND +LVA+DAIGMGLNL + RII T G
Sbjct: 378 GSLPPGTKLTQAKKFNDPDDPCKILVATDAIGMGLNLXVKRIILXTPSSNCINEKGERDE 437
Query: 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
+T + QIAGRAG + KF GEVT + ED LL + L P + +AGL P + I
Sbjct: 438 PITTSQGLQIAGRAGEFSFKFKEGEVTTMYREDXXLLKEILNRPVEPMAAAGLHPTAEQI 497
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
M++ PD++L +++ F+ +++ +YF N ++ +A +I +PL L +Y+FC +
Sbjct: 498 EMFAYQLPDATLSNLIDIFVSLSQVDGHYFVCNVDDFKFLADMIQHIPLNLRVRYVFCTA 557
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDL 354
P++ L +FA YS+ + + T L PK L LE++H V DL
Sbjct: 558 PINKKQPFVCTSLLKFARQYSRNEPLTFDWLCRHTSWPLVPPKNIKDLIHLEAVHDVFDL 617
Query: 355 YVWLSFRLEESFPD 368
Y+WLS+R + FPD
Sbjct: 618 YLWLSYRFVDMFPD 631
>gi|452824358|gb|EME31361.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 700
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 230/391 (58%), Gaps = 8/391 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + VIDEIQ+LG R +++TRALLG+ ELHLCGDP++ ++++++ T
Sbjct: 290 MAPVHRRFQVGVIDEIQLLGDNERAWAWTRALLGLAVEELHLCGDPSSENIVRKLINRTQ 349
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + VQ YERLS L L S +Q GDC+V FS+ +++ K IE CS++Y
Sbjct: 350 DSLSVQYYERLSSLTVEEDRLTSLQQLQAGDCLVAFSKADLFKWKVDIERETGLKCSVIY 409
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPE R +Q+ FN ++ +LVA+DAIGMGLNLNI R+IFS++ KFDG E+ L+
Sbjct: 410 GGLPPEVRRQQSMLFNHSNRSDRILVATDAIGMGLNLNIRRVIFSSLLKFDGKEVCSLSP 469
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
+V+QI GRAGR+GS FP G +T ++ EDL + ++ + + AGLFP+ D + +++
Sbjct: 470 SQVRQIGGRAGRFGSLFPDGLITAVNQEDLEYIRETFSKKLAPVPQAGLFPSADKVQLFA 529
Query: 241 --RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
+ SS I + A++ +F + ++V A VI+ LPL + KY C+ PV
Sbjct: 530 EEKAASRSSFSMIWDEMANLARVDGTFFLCSFDDVKARAQVIEDLPLSIETKYTLCMCPV 589
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV--PKTQAALRELESIHKVLDLYV 356
DM S +F+ + +G V+L T QV + + +LES +K+LD+Y+
Sbjct: 590 DMGIPKQSVAFAEFSRELAFEGCVRL----TKAMRQVYPAENWKDMNDLESTYKILDMYL 645
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFL 387
WL+ R ++F D E A + C +++ L
Sbjct: 646 WLAQRFRDAFVDIENATMLRTKCCRVLQNCL 676
>gi|328705328|ref|XP_001949841.2| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Acyrthosiphon pisum]
Length = 767
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 241/396 (60%), Gaps = 15/396 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA+V + YD AVIDEIQM+ +RG+++TRALLG+ ANE+H+CG+ AV L++ ++ TG
Sbjct: 260 MANVNTPYDIAVIDEIQMMKDPSRGWAWTRALLGLVANEIHICGEEGAVDLVKGLMITTG 319
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V Y+RL+ L N + + NI GDCIV FS++ +Y + + IESRG + +++Y
Sbjct: 320 EDVQVCRYKRLTELTVENSAVCTLDNIVPGDCIVCFSKNDVYTVSRGIESRGIEV-AVIY 378
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND + VLVA+DAIGMGLNL+I R+IF T+ + E+
Sbjct: 379 GGLPPNTKLAQAQKFNDPKNSCSVLVATDAIGMGLNLSIRRVIFYSLIKPTLNEKGEKEM 438
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFD 234
++V + QIAGRAGRYG+++ G VT +DLP L L E P P+L+ AGL P D
Sbjct: 439 DTISVSQALQIAGRAGRYGTQYEKGCVTTFKPQDLPTLRNILSEKPEPILK-AGLHPTAD 497
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P+S+L +++ F+ + + ++ YF N E+ +A +I +PL L +Y+F
Sbjct: 498 QIELYAYHLPNSTLSNLVDIFISLSTVDDSLYFMCNIEDFKFLADMIQHVPLPLRARYVF 557
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIH 349
C +P++ ++A YSK + + I P T +PKT L LE++
Sbjct: 558 CCAPINRKMPFVCTMFLKYARQYSKNESITFDWLCKHIGWPFT--IPKTIIDLVHLEAVF 615
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
VLDLY+W S+R + F + L ++ +IE+
Sbjct: 616 DVLDLYLWFSYRFSDLFLEANLVRDMQSELDDIIEQ 651
>gi|307214392|gb|EFN89463.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Harpegnathos saltator]
Length = 750
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 244/401 (60%), Gaps = 15/401 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ S+Y+ AVIDEIQ++ RG+++TRALLGI A+E+HLCG+ AA+ L++ I TG
Sbjct: 343 MVNLQSNYEVAVIDEIQLMRDLNRGWAWTRALLGIPADEIHLCGEAAAIDLVKAICLSTG 402
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+++ Y+RL+ L N LGS +N+Q GDCIV F+++ I+ + +++ESRG + +++Y
Sbjct: 403 EDVEIRRYKRLTQLEIENQALGSLNNVQPGDCIVCFNKNDIFTVSRSLESRGIEV-AVIY 461
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM-----KKFDGVEL 175
GSLPP T+ QA +FND + VLVA++AIGMGLNL+I RIIF ++ + E+
Sbjct: 462 GSLPPGTKLAQAAKFNDPKNSCKVLVATNAIGMGLNLHIRRIIFYSLIQPSINEKGEKEM 521
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFD 234
L+V QIAGRAGRYG+ + G VT EDL L K LL+ +P ++ AGL P D
Sbjct: 522 DVLSVSATLQIAGRAGRYGTAWTTGYVTTFKQEDLRTL-KDLLDQTPEIITQAGLHPTAD 580
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P+S L +++ F+ + + + YF N ++ +A +I +PL L +Y+F
Sbjct: 581 QIELYAYHLPNSPLSNLMDIFVSLSTVDNSLYFMCNLDDFKFLADMIQHVPLPLRARYVF 640
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIH 349
C +P++ +FA YSK + + I P +PKT L LE +
Sbjct: 641 CCAPINKKSPYVCAMFLKFARQYSKNDAITFSWLCQHIGWP--FAIPKTILDLVHLEGVF 698
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WLS+R + FPD ++ + LIE + +L
Sbjct: 699 DVLDLYLWLSYRFMDLFPDAKIVRDVQKELDALIEAGIVKL 739
>gi|383856403|ref|XP_003703698.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Megachile rotundata]
Length = 736
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/396 (39%), Positives = 246/396 (62%), Gaps = 15/396 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ + Y+ A+IDEIQ++ TRG+++TRA LGI A+E+HLCG+ +A+P+I+ I G
Sbjct: 262 MVNIQNTYEVAIIDEIQLIRDLTRGWAWTRAFLGIAADEIHLCGESSAIPIIESICLTIG 321
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ ++V++Y+RL+ L N+ L SF N+Q GDCIV F+++ I+ + AIE GK + +++Y
Sbjct: 322 EQLEVKTYKRLTKLEIENIALRSFCNVQAGDCIVCFNKNDIFTVSNAIEKLGKKV-AVIY 380
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST-----MKKFDGVEL 175
GSLPP T+ QA RFND + +LVA++AIGMGLNL+I RIIF + + + +E+
Sbjct: 381 GSLPPGTKLAQAARFNDPNDPCKILVATNAIGMGLNLHIRRIIFYSLTQPGLNEKGEIEV 440
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFD 234
++V QIAGRAGRYG+++ G VT EDL +L K LL+ +P +E AGL P D
Sbjct: 441 SLISVSSALQIAGRAGRYGTQWETGFVTTFKYEDLNVL-KQLLQKTPDEIEQAGLHPTPD 499
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P++ L +++ F+ +L ++ YF N ++ VA +I+ +PL L KY+F
Sbjct: 500 QIELYAYYLPNAPLSNLIDIFIALCRLDDSLYFICNLDDFKFVADMIEHIPLPLRTKYVF 559
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLR----EIFTPGTLQVPKTQAALRELESIH 349
C +PV+ + L ++A SK + ++ +I P VP L LE++
Sbjct: 560 CCAPVNRKVPFTCNMLLKYARQCSKNTPITIQWLCLQIQWPS--NVPINLVELVRLEAVF 617
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
VLD+Y+WLS+R+ + FPD + + + IEE
Sbjct: 618 DVLDVYLWLSYRMPDMFPDTDGVRNLQKELDKTIEE 653
>gi|427779903|gb|JAA55403.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 716
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 227/378 (60%), Gaps = 9/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + YD AVIDEIQM+ RG+++TRALLG+ A ELHLCG+ AA+ L++ +L G
Sbjct: 251 MAAVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLG 310
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ L N L S IQ GDC+V F++ IY++ IE +G C+++Y
Sbjct: 311 EELEVRKYKRLTQLTIENRALESLEKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIY 369
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
G LPP T+ QA +FND S VLVA+DAIGMGLNL+I R+IF ++ K E +
Sbjct: 370 GGLPPGTKLAQAQKFNDPSHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQM 429
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+GS++ VG T + +DLP L + L +E+AGL P +
Sbjct: 430 DTISTSQALQIAGRAGRFGSRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQ 489
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P ++L +++ F+ K+ S +YF N E +A +I +PL L +Y+FC
Sbjct: 490 IELFAYHLPHATLANLVDIFVSLCKVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFC 549
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKG--IVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
SP++ +FA YS+ Q E L VPKT L LE++ VL
Sbjct: 550 CSPINQKMPFVCSMFLKFARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVFDVL 609
Query: 353 DLYVWLSFRLEESFPDRE 370
DLY+WLS+R + FPD E
Sbjct: 610 DLYLWLSYRFPDLFPDAE 627
>gi|427779183|gb|JAA55043.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 689
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 227/378 (60%), Gaps = 9/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + YD AVIDEIQM+ RG+++TRALLG+ A ELHLCG+ AA+ L++ +L G
Sbjct: 251 MAAVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLG 310
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ L N L S IQ GDC+V F++ IY++ IE +G C+++Y
Sbjct: 311 EELEVRKYKRLTQLTIENRALESLEKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIY 369
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
G LPP T+ QA +FND S VLVA+DAIGMGLNL+I R+IF ++ K E +
Sbjct: 370 GGLPPGTKLAQAQKFNDPSHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQM 429
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+GS++ VG T + +DLP L + L +E+AGL P +
Sbjct: 430 DTISTSQALQIAGRAGRFGSRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQ 489
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P ++L +++ F+ K+ S +YF N E +A +I +PL L +Y+FC
Sbjct: 490 IELFAYHLPHATLANLVDIFVSLCKVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFC 549
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKG--IVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
SP++ +FA YS+ Q E L VPKT L LE++ VL
Sbjct: 550 CSPINQKMPFVCSMFLKFARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVFDVL 609
Query: 353 DLYVWLSFRLEESFPDRE 370
DLY+WLS+R + FPD E
Sbjct: 610 DLYLWLSYRFPDLFPDAE 627
>gi|339235253|ref|XP_003379181.1| putative calcium binding EGF domain protein [Trichinella spiralis]
gi|316978157|gb|EFV61170.1| putative calcium binding EGF domain protein [Trichinella spiralis]
Length = 1281
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 242/400 (60%), Gaps = 13/400 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D Y+ AVIDEIQM+ RG+++TRALLG+CA+E+H+CG+ AAV L++++L G
Sbjct: 359 MLDTRVHYEVAVIDEIQMMRDLQRGWAWTRALLGVCADEIHVCGELAAVDLVKELLVSLG 418
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+ ++ +YER +PL L+ PLGS +IQ DCIV F+R+ ++++ + +E+ G+ + +++Y
Sbjct: 419 DEFELHTYERKTPLKILDSPLGSLDSIQPYDCIVAFNRNDLFKVTRQVEASGRSV-AMIY 477
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND DVLVA+DAIGMGLNL+I R+IF T+ + EL
Sbjct: 478 GSLPPGTKLAQARKFNDPDDPCDVLVATDAIGMGLNLSIRRVIFYSLVKVTLNESGEKEL 537
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+G+ GEVT L EDLP L L +P+ + +AGLFP +
Sbjct: 538 EPISTSQALQIAGRAGRFGTFHESGEVTTLRMEDLPALKAILTKPTEPIPAAGLFPTLEQ 597
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFC 294
I M++ P ++L +L+ F+ + + E+ FF N +++ +A +I+ +PL L +Y+FC
Sbjct: 598 IEMFAYYLPKATLSNLLDIFVSLSAVDESRFFMCNVDDLKFLADMIEHVPLTLKVRYIFC 657
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQ----LREIFTPGTLQVPKTQAALRELESIHK 350
++P+ ++A +S+ + R + P P L LE +
Sbjct: 658 MAPISRKKPFVCGMFLRYARKFSRGEPLTSDWLARTVGWP--FSAPTKIVDLIHLEDVFD 715
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLD Y+WL +R + FP+ E + + +LI E L+ +
Sbjct: 716 VLDTYLWLGYRFTDMFPETEQVRAMQRELDVLIRESLQNV 755
>gi|281204259|gb|EFA78455.1| Mitochondrial RNA helicase [Polysphondylium pallidum PN500]
Length = 889
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 226/382 (59%), Gaps = 16/382 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA D AVIDE QM+ RG+++TRA+LG+ A E+HLCGD AV LI+++ + TG
Sbjct: 459 MASTNRLVDVAVIDEFQMIADLGRGWAWTRAVLGLPAREIHLCGDNTAVSLIEKLAKTTG 518
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++V+ YERL+PL + + ++ GDCI++FSR I K IE RG C++VY
Sbjct: 519 DTIEVRYYERLAPLRVESKSVDWRRTLEKGDCIISFSRRDILETKSLIERRGLK-CAVVY 577
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPETR QA FN+ S +DVLVASDAIGMGLNLNI R+IFS +KKFDG E+R L
Sbjct: 578 GALPPETRANQAQLFNEPDSGYDVLVASDAIGMGLNLNIRRVIFSEIKKFDGKEMRKLVH 637
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
EVKQIAGRAGR+ S+FP G VT + S ++ + + L P+ + E AG+FP + ++
Sbjct: 638 SEVKQIAGRAGRFRSEFPEGLVTSVSSINIGYIKEQLELPNVVTERAGIFPQEAQLEQFA 697
Query: 241 R-LHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
R L + + +LE F E L YF N ++ +KVA +ID + L + KY F ++P+
Sbjct: 698 RHLGKEVRTFSELLERFFECTNLDNLYFMENTDDKIKVARLIDHIKLPVKTKYAFIMAPL 757
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVP--------KTQAALRELESIHK 350
+ + S+ Y K + R + P ++ P Q L LE +
Sbjct: 758 KLKEKESN-----IEKIYVKYTALFGRGVEVPHMVEEPICVSQDYNDLQNYLGRLEECYA 812
Query: 351 VLDLYVWLSFRLEESFPDRELA 372
+LDLY+WL+ R + F + A
Sbjct: 813 ILDLYLWLAQRFQVQFSQFDTA 834
>gi|427788961|gb|JAA59932.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 679
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 235/391 (60%), Gaps = 10/391 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V + YD AVIDEIQM+ RG+++TRALLG+ A ELHLCG+ AA+ L++ +L G
Sbjct: 214 MAAVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLG 273
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V+ Y+RL+ L N L S IQ GDC+V F++ IY++ IE +G C+++Y
Sbjct: 274 EELEVRKYKRLTQLTIENRALESLEKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIY 332
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
G LPP T+ QA +FND S VLVA+DAIGMGLNL+I R+IF ++ K E +
Sbjct: 333 GGLPPGTKLAQAQKFNDPSHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQM 392
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+GS++ VG T + +DLP L + L +E+AGL P +
Sbjct: 393 DTISTSQALQIAGRAGRFGSRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQ 452
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P ++L +++ F+ K+ S +YF N E +A +I +PL L +Y+FC
Sbjct: 453 IELFAYHLPHATLANLVDIFVSLCKVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFC 512
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKG--IVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
SP++ +FA YS+ Q E L VPKT L LE++ VL
Sbjct: 513 CSPINQKMPFVCSMFLKFARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVFDVL 572
Query: 353 DLYVWLSFRLEESFPDRE-LAASQKAICSML 382
DLY+WLS+R + FPD E + A Q+ + S++
Sbjct: 573 DLYLWLSYRFPDLFPDAEAVRAMQQELDSII 603
>gi|367045754|ref|XP_003653257.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
gi|347000519|gb|AEO66921.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
Length = 725
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/430 (37%), Positives = 242/430 (56%), Gaps = 27/430 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+ + RG+++T+A LG+ A E+HLCG+ VPLIQ + G
Sbjct: 237 MTPMNARVDVAVIDEIQMIASEDRGWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIG 296
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
++ V Y+RL+PL ++ L G FSN+Q GD +V FSR ++++LK IE C+IV
Sbjct: 297 EECIVHRYQRLNPLNVMDESLKGKFSNLQKGDAVVAFSRVSLHQLKAGIEKETGRRCAIV 356
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETR QA FN+ ++E+D LVASDAIGMGLNL I R++F KFDGV R LT
Sbjct: 357 YGNLPPETRASQAALFNNPNNEYDYLVASDAIGMGLNLEIKRVVFEASYKFDGVTFRPLT 416
Query: 180 VPEVKQIAGRAGRY----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
VPE+KQI GRAGR+ S+ G VT LD EDL L+ + + +P + +AGL
Sbjct: 417 VPEIKQIGGRAGRFRTATRETAGDTSQPSPGLVTTLDEEDLDLIRAAFGKEAPPIPTAGL 476
Query: 230 FPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
FP +I +S P + + +L E ++LS + + + +A +I Q L +
Sbjct: 477 FPPPAVIERFHSYFPPRTPISFVLARLREMSRLSPRFHMCDFTNAMDIAEIIKQYDLSVS 536
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL-------REIFTPGTLQVPKTQAA 341
++ +F P+++ D + L FA ++ G L E+ P Q
Sbjct: 537 DRCVFLNVPMNLRDPRQVEALRAFAKCVAEMGSGHLLDFPEIDLEVLDLARPTAPSQQVE 596
Query: 342 -LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW-------Q 393
L LES+H+ + +Y+WLS+R + F + LA K + I + LE+L + +
Sbjct: 597 YLHRLESLHQAITMYLWLSYRYQGVFQSQGLAFKVKELVEAKIADHLEKLSFVEEQQRSK 656
Query: 394 KPRVKKVTPR 403
+ R++K+ R
Sbjct: 657 RRRMRKLAAR 666
>gi|347970020|ref|XP_309651.5| AGAP003508-PA [Anopheles gambiae str. PEST]
gi|333466653|gb|EAA05399.5| AGAP003508-PA [Anopheles gambiae str. PEST]
Length = 819
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 229/379 (60%), Gaps = 9/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQ+L RG+++TRA LG+ A E+H+CG+P L+Q++ + T
Sbjct: 268 MTSINTPYEVAVIDEIQLLKDVGRGWAWTRAFLGLMAEEIHVCGEPGTADLLQKLCETTH 327
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ ++V++Y+RL+PL L + N+ GDCIV FS++ IY + + IE+RGK + +++Y
Sbjct: 328 ESLEVRNYKRLTPLHIEEQALQTLDNVLPGDCIVCFSKNDIYAVSREIEARGKEV-AVIY 386
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ VLVA+DAIGMGLNL+I R+IF TM + E+
Sbjct: 387 GGLPPGTKLAQAAKFNDPNNSCKVLVATDAIGMGLNLSIRRVIFYSMIKPTMNQKGEKEM 446
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRYG K+ G VT +EDLP L L + L AGL P D+
Sbjct: 447 DTISVSAALQIAGRAGRYGMKWEEGYVTTFKAEDLPTLKGILGQTPDPLTQAGLHPTADM 506
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+++L ++E F+ + + ++ YF N E+ +A I +PL L +Y+FC
Sbjct: 507 IELYAYHLPNATLSNLMEIFVSLSTVDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFC 566
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ N ++A YS+ V + Q+P+T L LE++ VL
Sbjct: 567 CAPINRNMPFVCSMFLKYARRYSRNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVL 626
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD +L
Sbjct: 627 DLYLWLSYRFPDLFPDEKL 645
>gi|328771880|gb|EGF81919.1| hypothetical protein BATDEDRAFT_10090, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 454
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 223/362 (61%), Gaps = 4/362 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V ++D AV+DEIQ++G + RG+++T ALL + A E+HLCG+ + +++++ + TG
Sbjct: 92 MALVNREFDVAVVDEIQLIGDQQRGWAWTHALLALQAKEVHLCGEGTTLDIVRKLCKTTG 151
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+ L L G+F+ I+ GD I+ FSR ++ K+ +E + +I+
Sbjct: 152 DTLEINEYERLTSLTVAQKSLEGNFNQIKPGDAIIAFSRKNVFNAKQFVELNTPYKAAII 211
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE+R QA FND S+ VLVASDAIGMGLNLNI RI+F TM+KF+G ++ LT
Sbjct: 212 YGGLPPESRADQAKLFNDPESDRQVLVASDAIGMGLNLNIRRIVFYTMQKFNGTKIIPLT 271
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
V + KQIAGRAGR+G+++ G+VTCL+++D+ LLH S+ +P + S G+ P + + +
Sbjct: 272 VSQTKQIAGRAGRFGTQWENGQVTCLETKDMALLHASMKMTAPRIMSVGITPTVEQVEQF 331
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
S P+ + +L+ F + A+L NYF N + +A +I +PL + ++Y F SP +
Sbjct: 332 SNSLPNDTYATLLDKFEDLAQLDGNYFMCNLDHHRAIAKLIQTIPLNIRDRYHFVQSPCN 391
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQA---ALRELESIHKVLDLYV 356
+ + +FA +S + L ++ + + + L LE H+V LY+
Sbjct: 392 PEEPFIKAAIVKFARAHSMGEELSLDQVMLSDEEYIDHSDSPTTKLNALEVKHRVTILYL 451
Query: 357 WL 358
WL
Sbjct: 452 WL 453
>gi|357626560|gb|EHJ76612.1| putative ATP-dependent RNA and DNA helicase [Danaus plexippus]
Length = 1069
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 235/393 (59%), Gaps = 9/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YD A+IDEIQMLG K RG+++TRA+LG+ A+E+HLCG+ A+ L++++ TG
Sbjct: 292 MTSLNDTYDVAIIDEIQMLGDKGRGWAWTRAVLGLKADEIHLCGEAGAISLVEEMCNTTG 351
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V++Y+RL+ L N LG+ N++ GDCIV F+++ IY + +AIE RG+ + +++Y
Sbjct: 352 EELEVRTYKRLTELKVENSALGTLDNVKAGDCIVCFNKNDIYSVSRAIEQRGREV-AVIY 410
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK----FDG-VEL 175
GSLPP T+ QA +FND S V+VA+DAIG+G+NL+I RIIF ++ K DG E+
Sbjct: 411 GSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINVDGDKEM 470
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+++ + QIAGRAGRYGS + G VT SEDL L L +P + AGL P +
Sbjct: 471 DVISISQALQIAGRAGRYGSAWETGYVTTFKSEDLATLKTLLSQPPDPVTQAGLHPTAEQ 530
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
+ +Y+ P +SL +++ F+ + YF N E +A +I +PL L +Y+FC
Sbjct: 531 MELYAYHLPHASLSSLMDIFVHLCTVDATLYFMCNTEGFKFLAEMIQHVPLPLRARYVFC 590
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVL 352
+P++ + YS+ + + L P+T L LE++ VL
Sbjct: 591 CAPINNKLPFVCATFLKMVRQYSRNEPITRNWMSNVVDWPLPAPRTIMDLVHLEAVFDVL 650
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
+LY+WLS+R + FPD +L + +I++
Sbjct: 651 ELYLWLSYRFPDMFPDVKLVREMEVELDAIIQQ 683
>gi|157116275|ref|XP_001658414.1| ATP-dependent RNA and DNA helicase [Aedes aegypti]
gi|108876556|gb|EAT40781.1| AAEL007512-PA [Aedes aegypti]
Length = 745
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 230/379 (60%), Gaps = 9/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQ+L RG+++TRALLG+ A E+H+CG+P + L+Q+I T
Sbjct: 255 MTSITTPYEVAVIDEIQLLKDVGRGWAWTRALLGLMAEEIHVCGEPGTLDLLQKICDTTN 314
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V++Y+RL+ L + L + N++ GDCIV FS++ IY + + IE+RG+ + +++Y
Sbjct: 315 EELEVRNYKRLTALHIEDQALQTLDNVRPGDCIVCFSKNDIYSVSREIEARGREV-AVIY 373
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
G LPP T+ QA +FND + VLVA+DAIGMGLNL+I R+IF ++ K E+
Sbjct: 374 GGLPPGTKLAQAAKFNDPENSCKVLVATDAIGMGLNLSIRRVIFYSIIKPSVNQKGEKEM 433
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V + QIAGRAGRYG K+ G VT EDLP L L + L AGL P D+
Sbjct: 434 DTISVSQALQIAGRAGRYGMKWDEGYVTTYKPEDLPTLKNILGQTPDPLTQAGLHPTADM 493
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+++L ++E F+ + + ++ YF N E+ +A I +PL L +Y+FC
Sbjct: 494 IELYAYHLPNATLSNLMEIFVSLSTVDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFC 553
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ ++A YSK V + Q+P+T L LE++ VL
Sbjct: 554 CAPINRQMPFVCSMFLKYARRYSKNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVL 613
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD +L
Sbjct: 614 DLYLWLSYRFPDLFPDEKL 632
>gi|340728105|ref|XP_003402370.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Bombus terrestris]
Length = 738
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 238/400 (59%), Gaps = 13/400 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ + Y+ VIDEIQ++ RG+++TRALLG+ A+E+HLCG+ AA+ ++Q I TG
Sbjct: 265 MANIQNVYEVGVIDEIQLIRDPGRGWAWTRALLGLAADEIHLCGESAAISIVQSICLTTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+++ Y+RL+ L N L S NIQ GDCIV FSR+ I+ + AIE G H +++Y
Sbjct: 325 ESVEIKQYKRLTSLEVENSALCSLQNIQPGDCIVCFSRNEIFSVTNAIEKMG-HKVAVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G+LPP T+ QA +FND + +LVA++AIGMGLNL+I RIIF T+ +
Sbjct: 384 GNLPPGTKIAQAAKFNDVNDPCKILVATNAIGMGLNLHIRRIIFYSITQPTVSGKGDADT 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRYG+++P G VT ED + K L + +E AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRYGTQWPKGFVTTYKPEDXSCIKKLLQQSPEEIEQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P++ L ++ F+ KL YF N ++ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYYLPNTPLSNLINIFIALCKLDSTLYFICNLDDFKFLADMIQHIPLPLRTRYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKK---GIVQLR-EIFTPGTLQVPKTQAALRELESIHK 350
+P++ ++ ++A SK I+ LR +I P ++P A L LESI
Sbjct: 564 CAPINRKMPLTCSMFLKYARQCSKNEPATILWLRKQINWPP--RMPSNVADLLHLESIFD 621
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLD+Y+WLS+R+ + FPD + + + +IE+ + ++
Sbjct: 622 VLDVYLWLSYRMPDLFPDADAVRTLQKEVDKIIEQGIRKI 661
>gi|367022578|ref|XP_003660574.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
gi|347007841|gb|AEO55329.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
Length = 777
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/410 (38%), Positives = 232/410 (56%), Gaps = 20/410 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+ RG+++T+A LG+ A E+HLCG+ VPLIQ + G
Sbjct: 282 MTPLNARVDVAVIDEIQMIANDERGWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIG 341
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ V YERL+PL ++ + G F N+Q GD IV FS+ +I++LK IE C++V
Sbjct: 342 EKCIVHRYERLNPLQVMDKSMKGRFGNLQKGDAIVAFSKVSIHQLKAGIEKETGRRCAVV 401
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR QA FND ++++D LVASDAIGMGLNL + R+IF + KFDG R LT
Sbjct: 402 YGSLPPETRASQAALFNDPNNDYDFLVASDAIGMGLNLEVKRVIFESSFKFDGTAFRPLT 461
Query: 180 VPEVKQIAGRAGRY----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
+PE+KQI GRAGRY SK G V+ LD EDL +++ + +P + +AG+
Sbjct: 462 IPEIKQIGGRAGRYRTAAQEMTGDTSKPAPGLVSALDDEDLQMINDAFQTEAPPIPTAGI 521
Query: 230 FPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
FP +I +S P + + +L E ++LS + + VL++A +I L +
Sbjct: 522 FPPPSVIERFHSYFPPRTPISFVLARLREMSRLSPRFHMCDFSVVLQIADIIQPYDLSVS 581
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL-------REIFTPGTLQVPKTQAA 341
++ +F PV++ D L FA ++ G +L E+ +P Q
Sbjct: 582 DRCVFLHVPVNLRDPRQVSALQAFAKCVAELGSGRLLDFDVIDLEVLDEVRPSLPSEQVT 641
Query: 342 -LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L LES+H+ + +Y+WLS+R + F + LA K + I + LE+L
Sbjct: 642 YLHRLESLHQTITMYLWLSYRYQGVFQSQGLAFKVKEMVEEKIADHLEKL 691
>gi|321456873|gb|EFX67971.1| hypothetical protein DAPPUDRAFT_63551 [Daphnia pulex]
Length = 734
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 237/400 (59%), Gaps = 13/400 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQML +RG+++TRALLG+ A E+H+CG+ AA+ ++++IL
Sbjct: 221 MVSVNTPYEVAVIDEIQMLKDPSRGWAWTRALLGVVAEEVHVCGEAAAIDVVKEILMSAS 280
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++++ Y+RL+ L+ + LG+ I+ GDC+V F++ I+ + IE+ G C+++Y
Sbjct: 281 EEIEMRRYKRLTELIIEDGSLGTLDKIRPGDCLVCFNKQDIFWSMRQIEAMGIE-CAVIY 339
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND VLVA+DAIGMGLNLNI R+IF+++ K E+
Sbjct: 340 GSLPPGTKLAQAKKFNDPDHPCKVLVATDAIGMGLNLNIGRVIFNSLIKPTTNEKGEKEM 399
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGRYG++F G VT L +EDLP L + L + + GL P +
Sbjct: 400 DTISTSQALQIAGRAGRYGTQFSTGYVTTLKNEDLPTLKRLLSQHPEPINQVGLHPTAEQ 459
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P ++L +++ F+ + L ++ YF N + +A +I +PL L +Y+FC
Sbjct: 460 IELYAYHLPHANLSNLIDIFVNLSTLDDSLYFICNINDFKFLADMIQHVPLPLRARYVFC 519
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
+P++ +FA YS+ ++ R+I P P T L LES+
Sbjct: 520 CAPINRKIPFVCSMFLKFARQYSRNEVLSFDWLGRQIGLP--FSCPNTLLELVHLESVFD 577
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WLS+R ++ FPD L + LI+ + +L
Sbjct: 578 VLDLYLWLSYRFQDLFPDASLVRDMQKELDCLIQTGVAQL 617
>gi|170035747|ref|XP_001845729.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
gi|167878035|gb|EDS41418.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
Length = 748
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 229/379 (60%), Gaps = 9/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQ+L RG+++TRALLG+ A E+H+CG+P + L+Q++ T
Sbjct: 263 MTSITTPYEVAVIDEIQLLKDVGRGWAWTRALLGLMAEEIHVCGEPGTLDLLQKMCDTTH 322
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ ++V++Y+RL+ L + L + N++ GDCIV FS++ IY + + IE+RG+ + +++Y
Sbjct: 323 ETLEVRNYKRLTALHIEDHALQTLDNVRPGDCIVCFSKNDIYTVSREIEARGREV-AVIY 381
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
G LPP T+ QA +FND + VLVA+DAIGMGLNL+I R+IF +M K E+
Sbjct: 382 GGLPPGTKLAQAAKFNDPDNSCKVLVATDAIGMGLNLSIRRVIFYSMIKPTVNQKGEKEM 441
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V + QIAGRAGRYG K+ G VT EDLP L L + L AGL P D+
Sbjct: 442 DTISVSQALQIAGRAGRYGMKWDEGYVTTFKPEDLPTLKNILGQTPDPLTQAGLHPTADM 501
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+++L ++E F+ + + ++ YF N E+ +A I +PL L +Y+FC
Sbjct: 502 IELYAYHLPNATLSNLMEIFVSLSIVDDSLYFICNTEDFKFLAETIQHVPLPLRARYIFC 561
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ ++A YSK V + Q+P+T L LE++ VL
Sbjct: 562 CAPINRQMPFVCSMFLKYARRYSKNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVL 621
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD +L
Sbjct: 622 DLYLWLSYRFPDLFPDEKL 640
>gi|189240823|ref|XP_001811917.1| PREDICTED: similar to ATP-dependent RNA and DNA helicase [Tribolium
castaneum]
gi|270013711|gb|EFA10159.1| hypothetical protein TcasGA2_TC012348 [Tribolium castaneum]
Length = 742
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 240/402 (59%), Gaps = 17/402 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + Y+ AVIDEIQM+ RG+++TRA LG+ A E+HLCG+ A+ LI Q+ T
Sbjct: 260 MASLTAPYEVAVIDEIQMVRDHQRGWAWTRAFLGLVAEEIHLCGEAGAIDLISQLCLTTN 319
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+D++V+ Y+RL+ L + LGS N+ GDCIV FS++ IY + + IE+ GK + +++Y
Sbjct: 320 EDIEVRHYKRLTDLKVEDTALGSLDNVMPGDCIVCFSKNDIYSVSRGIEATGKEV-AVIY 378
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND + +LVA+DAIGMGLNL+I R+IF TM + E+
Sbjct: 379 GGLPPGTKLAQAAKFNDPENSCKILVATDAIGMGLNLSIRRVIFYSLIKPTMNEKGEKEM 438
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLFPNF 233
++V QIAGRAGRYG+++ G VT EDL L K+LLE P P+ + AGL P
Sbjct: 439 DTISVSAALQIAGRAGRYGTQWEQGFVTTFKPEDLKTL-KTLLESLPEPITQ-AGLHPTA 496
Query: 234 DLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYL 292
+ I +Y+ P+S+L +++ F+ + + ++ YF N E+ +A +I +PL L +Y+
Sbjct: 497 EQIELYAYHLPNSTLSNLMDIFVSLSTVDDSLYFMCNVEDFKFLADMIQHVPLPLRARYV 556
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESI 348
FC +P+ +F YSK + R I P LQ PKT L LE++
Sbjct: 557 FCCAPISKKMPFVCTMFLKFTRQYSKNEPITFDWLCRNIGWP--LQPPKTIIDLVHLEAV 614
Query: 349 HKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WLS+R + F + +L + ++I++ + +L
Sbjct: 615 FDVLDLYLWLSYRFMDLFNEPDLVRDMQKELDVIIQQGVVQL 656
>gi|195109112|ref|XP_001999134.1| GI23236 [Drosophila mojavensis]
gi|193915728|gb|EDW14595.1| GI23236 [Drosophila mojavensis]
Length = 767
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 230/378 (60%), Gaps = 13/378 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + + RG+++TRA LG+ A+E+H+CG+ A+ L+++I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDQQRGWAWTRAFLGLIADEVHVCGEAGALELLEKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS++ IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKNDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND S+ V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPSNSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRY +++ G VT SEDL L + L + L+ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRYRTQWEHGYVTAFKSEDLQTLQRLLSQTPEPLKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I+ +PL L +Y+FC
Sbjct: 504 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMINHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
+P++ + A YS+ + R P ++P+T L LES+
Sbjct: 564 CAPINRKMPFVCSMFLKIARQYSRNEPITFDFIKRNCGWP--FKLPRTILDLVHLESVFD 621
Query: 351 VLDLYVWLSFRLEESFPD 368
V+DLY+WLS+R + FP+
Sbjct: 622 VMDLYLWLSYRFMDLFPE 639
>gi|384484725|gb|EIE76905.1| hypothetical protein RO3G_01609 [Rhizopus delemar RA 99-880]
Length = 378
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 235/407 (57%), Gaps = 43/407 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + D AVIDEIQ++ RG+++T+ALLG+ A E+HLCG+ AAVPLI++I +
Sbjct: 1 MASIGRPLDVAVIDEIQLIADPNRGWAWTQALLGLKAKEIHLCGEEAAVPLIRKICEDLD 60
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
++V V Y RL+P ++PL S S I+ GDC+V FSR I+ LKK IE++ C++
Sbjct: 61 EEVVVNKYGRLTPYTVSDMPLKSDLSQIEKGDCVVAFSRMNIFDLKKRIEAQTGLKCAVA 120
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR QA FND S DVLVASDA+GMGLNLNI R++FS +KKFDG E+R ++
Sbjct: 121 YGSLPPETRALQAKSFNDPDSGIDVLVASDAVGMGLNLNIKRVVFSNIKKFDGKEVRPIS 180
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
+P++KQIAGRAGR+G+ + G VT L+ DL + +++ P+ LE
Sbjct: 181 IPQLKQIAGRAGRFGTAYGNGIVTALNRADLRYIKEAVAAPNVELE-------------- 226
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
P+ + G+L N EE+ +LPLR ++Y F +PV
Sbjct: 227 ---MPNETFSGLL------------LIADNLEEI--------RLPLR--DRYQFVTAPVS 261
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
D S + + A +S+K I L E+ T P + + L+ LE HK + LY+WLS
Sbjct: 262 TRSDESMELIKILARKFSQKKICTLDELIELPT-NPPTSPSGLKALEESHKQIMLYMWLS 320
Query: 360 FRLEESF-PDRELAASQKAICSMLIEEFLE-RLGWQKPRVKKVTPRP 404
R ++F ++ A S K+ C LI++ L+ Q R + PRP
Sbjct: 321 TRYPDTFITTQDDATSIKSQCEHLIDDGLKLSRASQSIRKGRKHPRP 367
>gi|194743614|ref|XP_001954295.1| GF18203 [Drosophila ananassae]
gi|190627332|gb|EDV42856.1| GF18203 [Drosophila ananassae]
Length = 763
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 227/376 (60%), Gaps = 9/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A E+H+CG+ ++ L+++I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIAEEVHVCGEAGSLGLLEKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVENTALGSLDNVVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNEKGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT EDL +LH+ L + L+ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKPEDLQILHRILSQTPDPLKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT--PGTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 564 CAPINRKMPFVCSMFLKIARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY+WLS+R + FP+
Sbjct: 624 DLYLWLSYRFMDLFPE 639
>gi|336270658|ref|XP_003350088.1| hypothetical protein SMAC_00978 [Sordaria macrospora k-hell]
gi|380095483|emb|CCC06956.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 792
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 237/423 (56%), Gaps = 32/423 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+ + RG+++T+A+LG A ELHLCG+ V LIQ++ GD V Y
Sbjct: 295 DVAVIDEIQMIADEHRGWAWTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRY 354
Query: 69 ERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RL+PL+P+ +G+ F N+Q GD +++FSR ++ LK IE C+IVYGSLPPET
Sbjct: 355 QRLNPLLPMEEAVGTDFKNLQKGDAVISFSRVNLHALKAGIEGATGRKCAIVYGSLPPET 414
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA FND ++E+D LVASDAIGMGLNL I R++F + KFDG R LT+PEVKQI
Sbjct: 415 RAAQAALFNDPNNEYDFLVASDAIGMGLNLEIKRVVFESAFKFDGSTQRPLTIPEVKQIG 474
Query: 188 GRAGRY--------------------GSKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLES 226
GRAGRY SK+ G VT +D +DL + K LL+ + + +
Sbjct: 475 GRAGRYRTANDAVCSGNEGEASVTSAQSKWGAPGFVTAMDEQDLEHIKKHLLKDAKPITA 534
Query: 227 AGLFPNFDLIYMYSRLH-PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
AG+ P +I ++ L PD L +L E A+LS ++ + +VL+++ V+ + L
Sbjct: 535 AGIMPPSHIIERFASLFPPDIPLAFVLSRLREMARLSSSFNICSFGDVLEISNVLKEFNL 594
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQLREI------FTPGTLQVP 336
++++ + +PV + + L FA N S ++++ EI P L
Sbjct: 595 SIYDRSVLLTAPVSLREQAQKDVLRAFAWSIANLSGGHLLEIPEIDLEVLEVDPSALTAL 654
Query: 337 KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPR 396
+ L LE +HK + LY+WLS+R F ++LA K++ I LE + R
Sbjct: 655 ARKDHLVRLEGLHKAVTLYLWLSYRYRGVFISQQLAFHVKSLVEEKITNCLEAADFDAER 714
Query: 397 VKK 399
+K
Sbjct: 715 QQK 717
>gi|322802403|gb|EFZ22765.1| hypothetical protein SINV_08177 [Solenopsis invicta]
Length = 730
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/401 (39%), Positives = 242/401 (60%), Gaps = 22/401 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ ++Y+ AVIDEIQ++ RG+++TRALLGI A+E+HLCG+ A+ L++ I TG
Sbjct: 270 MVNLQNNYEVAVIDEIQLMRDLNRGWAWTRALLGIPADEIHLCGEAGAIELVKSICVSTG 329
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V+ Y+RL+ L N + + +N+ GDCIV F+++ IY + +++ESRGK + +++Y
Sbjct: 330 EDVEVRRYKRLTELEIENQAVETLNNVMPGDCIVCFNKNDIYTVSRSLESRGKEV-AVIY 388
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND ++ +LVA++AIGMGLNL+I RIIF T + E+
Sbjct: 389 GSLPPGTKLAQAAKFNDPNNSCKILVATNAIGMGLNLHIRRIIFYSLIQPTFNEKGEKEM 448
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFD 234
++V QIAGRAGRYG+ + G VT EDLP L K+LL +P + AGL P D
Sbjct: 449 DVMSVSAALQIAGRAGRYGTVWDTGYVTTFKREDLPTL-KNLLSQTPEPITQAGLHPTAD 507
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P+S+L +++ F+ + ++ YF N ++ +A +I + L L +Y+F
Sbjct: 508 QIELYAYHLPNSTLSNLMDIFVSLCTVDDSLYFMCNIDDFKFLADMIQHVSLPLRARYVF 567
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIH 349
C +P++ FA YSK + + I P Q+P+T L +LE +
Sbjct: 568 CCAPINRKS-------PYFARQYSKNDAITFNWLCQHIGWP--FQMPRTIIDLVDLEGVF 618
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WLS+R + FPD E + LIE + RL
Sbjct: 619 DVLDLYLWLSYRFMDLFPDAETVRDIQKELDALIEAGIVRL 659
>gi|58265860|ref|XP_570086.1| RNA helicase like protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110290|ref|XP_776201.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258871|gb|EAL21554.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226319|gb|AAW42779.1| RNA helicase like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 240/445 (53%), Gaps = 53/445 (11%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ +D VIDEIQMLG RG ++T+A+LG+ A E+HLCGD V L++ I+ GDD+ V
Sbjct: 310 TGFDVVVIDEIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVELLRGIIASLGDDLTV 369
Query: 66 QSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
Y RL+PL N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LP
Sbjct: 370 HQYNRLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALP 429
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PETR QA FND + +LVASDA+GMGLNL I RIIF ++ KF+G L++ ++K
Sbjct: 430 PETRAEQARDFNDEAGASKILVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIK 489
Query: 185 QIAGRAGRYGS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
QIAGRAGR+ + + P G T L +DLP+L + + P + A
Sbjct: 490 QIAGRAGRFKTGNDLTKISNIAAPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAK 549
Query: 229 L-FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-- 284
L P L+ + S L P S+ Y +L HF AK A + L +A +++
Sbjct: 550 LEIPTNGLVQL-STLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDR 608
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV------------------QLRE 326
L L E LFC +PV+ D+ + + +Y+++G V Q+ +
Sbjct: 609 LSLGEMDLFCFAPVNTRDERAKEIFVNLIEDYAEEGCVLVDNIFEGLQTNMLDTLDQVHD 668
Query: 327 IFT-------PGTLQVPKTQ------AALRELESIHKVLDLYVWLSFRLEESFPDRELAA 373
I T PG K +L LE++HK L LY+WLSFRLE +FPDR A
Sbjct: 669 ILTTLPPMPLPGHAASKKASIPPFIINSLPVLETLHKTLVLYIWLSFRLEVAFPDRSKAV 728
Query: 374 SQKAICSMLIEEFLERLGWQKPRVK 398
K C ++E+ LER+ KP K
Sbjct: 729 EYKVKCEGVLEDCLERMPGLKPSKK 753
>gi|302406861|ref|XP_003001266.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
gi|261359773|gb|EEY22201.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
Length = 695
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 232/411 (56%), Gaps = 36/411 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ AV L++ I GD V Y
Sbjct: 269 DVAVIDEIQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRY 328
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLSPL + L G S ++ GD +V FSR ++ LKKAIE + C+IVYGSLPPET
Sbjct: 329 ERLSPLQTMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPET 388
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +E+D LVASDAIGMGLNL + RIIF T KFDGV R L+ E+KQI
Sbjct: 389 RAQQAALFNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIG 448
Query: 188 GRAGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 231
GRAGR+ S K G VT LD+ DLP + ++ + + LE+A + P
Sbjct: 449 GRAGRFRSARQAATSADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINP 508
Query: 232 NFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEK 290
++ +S L PD+ L +L E A++S + + L+VA +I + PL +HE+
Sbjct: 509 PAFILERFSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFPLTIHER 568
Query: 291 YLFCISPVDMNDDISSQGLTQFATN--YSKKG--IVQLREIFTPGTLQVPKTQAA----- 341
+PV +N+ S L Q A N +++G + ++EI L++ A
Sbjct: 569 LSILNAPVQLNEP-SVVHLVQAAANCLATRQGGALYDMQEI----DLEILDATIADFDGD 623
Query: 342 ----LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
LR +E +H + LY+WLS+R F + LA K + IE L+
Sbjct: 624 GRRYLRAIEVLHHSVTLYLWLSYRFPNVFSSQALAFHVKELVQAKIEHHLD 674
>gi|405119868|gb|AFR94639.1| mitochondrial RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 828
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 238/442 (53%), Gaps = 53/442 (11%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ +D VIDEIQMLG RG ++T+A+LG+ A E+HLCGD V L++ ++ GDD+ V
Sbjct: 310 TGFDVVVIDEIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVDLLRGMIAFLGDDLTV 369
Query: 66 QSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
Y RL+PL N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LP
Sbjct: 370 HQYNRLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALP 429
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PETR QA FND VLVASDA+GMGLNL I RIIF ++ KF+G L++ ++K
Sbjct: 430 PETRAEQARDFNDEDGASKVLVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIK 489
Query: 185 QIAGRAGRYGS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
QIAGRAGR+ + + P G T L +DLP+L + + P + A
Sbjct: 490 QIAGRAGRFKTGNDLTKISNISAPDEAPAAGGIATTLAKDDLPILKELMTWSLPSISRAK 549
Query: 229 L-FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-- 284
L P L+ + S L P S+ Y +L HF AK + A + L +A +++
Sbjct: 550 LEIPTSGLVQL-STLLPASTTYAELLSHFSALAKPPSSTIIAAHDHKLPLAELVEPFRDR 608
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV------------------QLRE 326
L L E LFC +PV+ D+ + + +Y+++G V Q+ E
Sbjct: 609 LSLGEMDLFCFAPVNTRDERAKEIFVNLIEDYAEEGCVLIDNIFEGLQTNMLDTLDQVHE 668
Query: 327 IFTPGTLQVPKTQAALRE-------------LESIHKVLDLYVWLSFRLEESFPDRELAA 373
I P QA ++ LE++HK L LY+WLSFRLE +FPDR A
Sbjct: 669 ILVTLPPMPPPGQAGSKKASIPPFIINSLPVLETLHKTLVLYIWLSFRLEVAFPDRPKAV 728
Query: 374 SQKAICSMLIEEFLERLGWQKP 395
K C ++E+ LER+ KP
Sbjct: 729 EYKVKCEGVLEDCLERMPGLKP 750
>gi|296420756|ref|XP_002839934.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636142|emb|CAZ84125.1| unnamed protein product [Tuber melanosporum]
Length = 745
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 167/444 (37%), Positives = 252/444 (56%), Gaps = 35/444 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D+ + + AV+DEIQM+G + RG+++T+ALLG+ A E+H+CG+ V LI+ + G
Sbjct: 264 MVDLNREVEVAVLDEIQMIGDEDRGWAWTQALLGVRAKEVHMCGEERTVDLIKSLAANVG 323
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ V +Y+RL PL + LG + IQ GDC+VTFSR +I+ +KK IE C+++
Sbjct: 324 DECIVHNYKRLGPLEVMKESLGGDLTKIQKGDCVVTFSRKSIFAMKKEIEKVTGLRCAVI 383
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR+ QA FND S +DVLVASDA+GMGLNL+I R+IF T K++G E ++
Sbjct: 384 YGSLPPETRSLQARYFNDPESGYDVLVASDAVGMGLNLSIKRMIFETTIKWNGSEYEPIS 443
Query: 180 VPEVKQIAGRAGRYG--------------SKFP----VGEVTCLDSEDLPLLHKSL-LEP 220
VP +KQIAGRAGRY + P VG VT LD D L ++ + P
Sbjct: 444 VPHIKQIAGRAGRYKVAVSKHNIQADETIAPLPAAPSVGLVTTLDEVDYKSLKYAMSVTP 503
Query: 221 SPMLESAGLFPNFDLIYMYSRLH-PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV 279
P + +AG+ PN I ++ L+ PD L L+ E + + E +K A +
Sbjct: 504 KP-IATAGILPNSSQIEEFASLYPPDKELSFTLKTMDEAMHTRKLFHICRVETQIKTAKL 562
Query: 280 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA--TNYSKKGIVQLREI----FTPGT 332
++ + LR+ EK FC++P+ N + + + + A Y+K G L EI
Sbjct: 563 LEGITGLRILEKLQFCMAPIGRNVTV-QEAVRKMAECVGYNKDG--SLLEIPNLDLEVLD 619
Query: 333 LQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
+ PKT L+ LES+HK + +++WLS+R +F RE A K IC I+ L + +
Sbjct: 620 IDNPKTMPVLQRLESLHKTILVWLWLSWRFPATFAPRETAQELKTICEEKIDIALSNVRF 679
Query: 393 Q---KPRVKKVTPRPKLNSAVVSR 413
+ KPR +++T +++ + R
Sbjct: 680 ERGKKPRYERITLGASMDAEEIGR 703
>gi|346977041|gb|EGY20493.1| ATP-dependent RNA helicase SUV3 [Verticillium dahliae VdLs.17]
Length = 748
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 232/411 (56%), Gaps = 36/411 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ AV L++ I GD V Y
Sbjct: 269 DVAVIDEIQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRY 328
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLSPL + L G S ++ GD +V FSR ++ LKKAIE + C+IVYGSLPPET
Sbjct: 329 ERLSPLQTMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPET 388
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +E+D LVASDAIGMGLNL + RIIF T KFDGV R L+ E+KQI
Sbjct: 389 RAQQAALFNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIG 448
Query: 188 GRAGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 231
GRAGR+ S K G VT LD+ DLP + ++ + + LE+A + P
Sbjct: 449 GRAGRFRSARQAAISADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINP 508
Query: 232 NFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEK 290
++ +S L PD+ L +L E A++S + + L+VA +I + PL +HE+
Sbjct: 509 PAFILERFSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFPLTIHER 568
Query: 291 YLFCISPVDMNDDISSQGLTQFATN--YSKKG--IVQLREIFTPGTLQVPKTQAA----- 341
+PV +N+ S L Q A N +++G + ++EI L++ A
Sbjct: 569 LSILNAPVQLNEP-SVVHLVQAAANCLATRQGGALYDMQEI----DLEILDATIADFDGD 623
Query: 342 ----LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
LR +E +H + LY+WLS+R F + LA K + IE L+
Sbjct: 624 GRRYLRAIEVLHHSVTLYLWLSYRFPNVFSSQALAFHVKELVQAKIEHHLD 674
>gi|16197971|gb|AAL13756.1| LD23445p [Drosophila melanogaster]
Length = 499
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 225/376 (59%), Gaps = 9/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 1 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 60
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 61 ETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 119
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 120 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 179
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L ++ AGL P D
Sbjct: 180 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQ 239
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I + L L +Y+FC
Sbjct: 240 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFC 299
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 300 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 359
Query: 353 DLYVWLSFRLEESFPD 368
DLY+WLS+R + FP+
Sbjct: 360 DLYLWLSYRFMDLFPE 375
>gi|221329989|ref|NP_649452.3| CG9791 [Drosophila melanogaster]
gi|251757439|sp|Q9VN03.3|SUV3_DROME RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|220902988|gb|AAF52149.3| CG9791 [Drosophila melanogaster]
gi|372466679|gb|AEX93152.1| FI17837p1 [Drosophila melanogaster]
Length = 763
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 225/376 (59%), Gaps = 9/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L ++ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I + L L +Y+FC
Sbjct: 504 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 564 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY+WLS+R + FP+
Sbjct: 624 DLYLWLSYRFMDLFPE 639
>gi|195394872|ref|XP_002056063.1| GJ10732 [Drosophila virilis]
gi|194142772|gb|EDW59175.1| GJ10732 [Drosophila virilis]
Length = 767
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 226/376 (60%), Gaps = 9/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ A+ L+++I + TG
Sbjct: 267 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAGALELLEKICETTG 326
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 327 ETVEVRRYDRLTELTVESSALGSLDNVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 385
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 386 GGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 445
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRY +++ G VT +EDL L + L + L+ AGL P D
Sbjct: 446 DTISVSSALQIAGRAGRYRTQWEHGYVTAFKAEDLQTLQRILNQTPEPLKQAGLHPTADQ 505
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+S+L +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 506 IELYAYHLPNSTLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 565
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LES+ V+
Sbjct: 566 CAPINRKMPFVCSMFLKIARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLESVFDVM 625
Query: 353 DLYVWLSFRLEESFPD 368
DLY+WLS+R + FP+
Sbjct: 626 DLYLWLSYRFMDLFPE 641
>gi|195036898|ref|XP_001989905.1| GH18537 [Drosophila grimshawi]
gi|193894101|gb|EDV92967.1| GH18537 [Drosophila grimshawi]
Length = 767
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/411 (38%), Positives = 240/411 (58%), Gaps = 17/411 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ A+ L+++I + TG
Sbjct: 267 MTSVNTPYEVAVIDEIQQMRDPQRGWAWTRAFLGLIADEVHVCGEAGALDLLEKICETTG 326
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 327 ETVEVRRYDRLTELTVESSALGSLDNVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 385
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 386 GGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 445
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRY +++ G VT S+DL +L + L + L+ AGL P D
Sbjct: 446 DTISVSSALQIAGRAGRYRTQWEHGFVTAFKSDDLKILQRILEQTPEPLKQAGLHPTADQ 505
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 506 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 565
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
+P++ + A YS+ + R P L PKT L LES+
Sbjct: 566 CAPINRKMPFVCSMFLKIARQYSRNEPITFDFIKRNCGWPPKL--PKTILDLVHLESVFD 623
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
V+DLY+WLS+R F D L AS ++E +++ +Q R+ K T
Sbjct: 624 VMDLYLWLSYR----FMDLFLEASSVREAQKELDEIIQQGVFQITRLLKNT 670
>gi|391343726|ref|XP_003746157.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Metaseiulus occidentalis]
Length = 694
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 229/370 (61%), Gaps = 9/370 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDEIQM+ RG+++TRALLGI A E+HLCG+ AA+PLI++IL G+ ++V++Y
Sbjct: 240 DVAIIDEIQMVKDPQRGWAWTRALLGIPAKEVHLCGEEAAIPLIREILAPLGEQIEVRNY 299
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERL+PLV L S SN+Q GDC+V F+++ IY + IE K C+I+YGSL P T+
Sbjct: 300 ERLTPLVVEKEALRSLSNLQPGDCVVCFNKNDIYTVSLEIERMDKQ-CAIIYGSLSPGTK 358
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD----GVELRD-LTVPEV 183
+ Q+ +FND +LVA+DAIGMGLNL+I RIIF + K + GV R+ L+V +
Sbjct: 359 SAQSEKFNDPDHPCKILVATDAIGMGLNLSIRRIIFYNVTKPNTNEKGVCEREVLSVSQA 418
Query: 184 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
QIAGRAGR+G+ + G VT + +DLP+L L + +AGL P D I +++
Sbjct: 419 LQIAGRAGRFGTAWSEGRVTTMKPQDLPILTHLLNSKPETIAAAGLHPTADQIELFAYHL 478
Query: 244 PDSSLYGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 302
P ++L +++ F ++++ YF N E + +A +I + L L +Y+FC +P++
Sbjct: 479 PHANLSNLIDIFCSLSRMNNAQYFMCNVESLKYLADLIQHVNLPLRARYVFCCAPINPKM 538
Query: 303 DISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ ++A YS+ V + + L+ P+ L LE++ V+DLY+WLS+
Sbjct: 539 PFVTTVFLKYARQYSRNEPVTCQRVHEIIGWPLKSPENIVELVHLEAVFDVVDLYLWLSY 598
Query: 361 RLEESFPDRE 370
R ++ FP++E
Sbjct: 599 RFQDLFPEQE 608
>gi|323451361|gb|EGB07238.1| hypothetical protein AURANDRAFT_10272 [Aureococcus anophagefferens]
Length = 480
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 223/384 (58%), Gaps = 19/384 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V +D AV+DEIQM+G RG ++TRAL G+ A E+H+CG A L++++ +TG
Sbjct: 99 MVPVGRRWDVAVVDEIQMIGSPDRGHAWTRALHGLDAREIHVCGALDAAALVERLCGITG 158
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL-CSIV 119
D +++ YERL+PL L ++ ++ GDC+VTFSR I+R+++ IE+ + + C +V
Sbjct: 159 DAFELKEYERLTPLTTERAHLDGWTGVKKGDCVVTFSRDDIHRVRREIETANEDMKCCVV 218
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF--------- 170
YG LPPETR +QA FND +S +DVLVASDA+GMGLNLNI R++F + K+
Sbjct: 219 YGQLPPETRAQQARLFNDEASGYDVLVASDAVGMGLNLNIGRVLFRQILKYSGELSDEAL 278
Query: 171 DGVELRDLTVPEVKQIAGRAGRYGSKFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
DG L + VKQIAGRAGR + F G VT +D+ DL + +L P+ + AG
Sbjct: 279 DGTRLSPVEHQLVKQIAGRAGRMATAFSSGGGGVTAMDARDLSYVRAALAAPNDAVSRAG 338
Query: 229 LFPNFDLIYMYSR--LHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVI-DQLP 284
LFP +++ +++ D L ++ F+E + E+ Y+ +EV KV + D +
Sbjct: 339 LFPPAEILALFAAELGDADMGLGDVVAAFVEACDIDESLYYVCGQDEVAKVVKKLDDDIR 398
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE 344
L L + LFC +P ++ND + L +A + G G P + L +
Sbjct: 399 LDLADMLLFCTAPCNLNDRFAVSMLNAYARARAGGGRCGPNVRLPKGR---PSKLSDLHD 455
Query: 345 LESIHKVLDLYVWLSFRLEESFPD 368
L S H VLDLY+WL+FR E+FPD
Sbjct: 456 LCSKHNVLDLYLWLAFRFPETFPD 479
>gi|116196278|ref|XP_001223951.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
gi|88180650|gb|EAQ88118.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
Length = 742
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/413 (38%), Positives = 228/413 (55%), Gaps = 22/413 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+ RG+++T+A LG+ A E+HLCG+ VPLIQ + G
Sbjct: 252 MTPLNAKVDVAVIDEIQMIADDERGWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIG 311
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ V Y+RL+PL ++ L G F N+Q GD IV F++ I++LK IE C+IV
Sbjct: 312 EKCVVHRYQRLNPLKMMDTSLKGKFGNLQKGDAIVAFTKLGIHQLKAGIEKTTGRRCAIV 371
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPETR QA FND ++++D LVASDAIGMGLNL I R+IF + KFDGV LR LT
Sbjct: 372 YGNLPPETRASQAALFNDPNNDYDFLVASDAIGMGLNLEIKRVIFESSYKFDGVNLRPLT 431
Query: 180 VPEVKQIAGRAGRYGSKFPV----------GEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
PE KQI GRAGR+ + G +T LD EDLP L K+ + + +AG+
Sbjct: 432 TPETKQIGGRAGRFRTAAQAASGDNTAPSPGLITALDDEDLPTLKKAFHAEAGPIRTAGV 491
Query: 230 FPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
FP +I YS P + + +L ++LS + N + + +I L +
Sbjct: 492 FPPPAIIERFYSYFPPRTPISFVLARLQHLSRLSPRFHMCNFNDAFAIGELIKGYDLSVA 551
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV-----PKTQAA-- 341
++ +F PV++ D L FA + G L + F L + P + A
Sbjct: 552 DRCVFLNVPVNLRDPQQISALQSFAKCVADLGTGHLLD-FKNIDLDILDEDRPIARQAQV 610
Query: 342 --LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
L+ LES+H+ + +Y+WLS+R + F + LA K++ I + LE+L +
Sbjct: 611 VYLQRLESLHRTIAMYLWLSYRYQGVFQSQNLAFKIKSMVEEKIADHLEKLSF 663
>gi|66815921|ref|XP_641977.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
gi|60470089|gb|EAL68070.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
Length = 904
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 215/364 (59%), Gaps = 15/364 (4%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDE Q++ RG S+TRA+LGI A ELHLCGD A+ L+++I ++TGD + + +Y
Sbjct: 485 EVAVIDEFQLMSDTIRGQSWTRAILGIPAVELHLCGDNTAIELVKKICEITGDTLTINNY 544
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS LV P+ S +I+ GDC++ F + I K +E +G C++VYGSLPP TR
Sbjct: 545 ERLSTLVIDEEPIASMGDIKKGDCLICFKKKDIIFYKNYLEKQGLK-CAVVYGSLPPTTR 603
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+QA FN S DVL+A+DAIGMGLNLNI R+IF T+KK+DG R+L EVKQIAG
Sbjct: 604 VQQAKLFNTDES-VDVLIATDAIGMGLNLNIGRVIFLTLKKYDGEVDRELYASEVKQIAG 662
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+K+PVG VT +DL + K P+ + + AG+ P I +S L +L
Sbjct: 663 RAGRFGTKYPVGSVTTFTRKDLAKIRKDWQSPNIISDRAGISPLSQQIEKFSLLPQCKNL 722
Query: 249 Y--GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV-DMNDDIS 305
+L F+EN + ++YF N +E + +A + D + + +K+LF P+ + ++I
Sbjct: 723 KFSEVLTEFMENTNIDKHYFLGNFQEFITIAQITDFTTMSVKDKFLFSQCPLSNSKNEIP 782
Query: 306 SQGLTQFATNYSKKGIVQL----------REIFTPGTLQVPKTQAALRELESIHKVLDLY 355
+ ++A YSK V L + F K L LES + V D+Y
Sbjct: 783 TSHYIKYALGYSKDRKVNLGFDIDKINNAEKRFNESPDDTKKFSEYLSTLESYYSVTDIY 842
Query: 356 VWLS 359
+WLS
Sbjct: 843 LWLS 846
>gi|426364980|ref|XP_004049568.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Gorilla gorilla gorilla]
Length = 774
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 215/349 (61%), Gaps = 10/349 (2%)
Query: 31 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 90
AL G+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S N++ G
Sbjct: 296 ALTGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPG 355
Query: 91 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150
DCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +LVA+DA
Sbjct: 356 DCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA 414
Query: 151 IGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205
IGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F GEVT +
Sbjct: 415 IGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 474
Query: 206 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 265
+ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ +++ Y
Sbjct: 475 NHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQY 534
Query: 266 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK---GIV 322
F N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 535 FVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFA 594
Query: 323 QLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDREL 371
LR + L PK L +LE++H VLDLY+WLS+R + FPD L
Sbjct: 595 WLRR-YIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASL 642
>gi|350420390|ref|XP_003492493.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Bombus impatiens]
Length = 729
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/395 (40%), Positives = 236/395 (59%), Gaps = 13/395 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ + Y+ VIDEIQ++ RG+++TRALLG+ A+E+HLCG+ AA+ ++Q I TG
Sbjct: 265 MANIQNIYEVGVIDEIQLIRDPNRGWAWTRALLGLAADEIHLCGESAAISIVQSICLTTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+++ YERL+PL N L S IQ GDCIV FSR+ I+ + AIE G H +++Y
Sbjct: 325 ESVEIKQYERLTPLEVENSALCSLRKIQPGDCIVCFSRNEIFSVSSAIEKMG-HKVAVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA RFND + +LVA++AIGMGLNL+I RIIF T+ + +
Sbjct: 384 GSLPPGTKIAQAARFNDINDPCKILVATNAIGMGLNLHIRRIIFYSIVQPTINEKGEAGV 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGRYG+++ G VT EDLPLL K L + +E AG+ P D
Sbjct: 444 DTISVSSALQIAGRAGRYGTQWSKGFVTTYKPEDLPLLKKLLQQIPEEIEQAGVHPTPDQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P++ L ++ F+ +L YF N ++ +A I +PL L +Y+FC
Sbjct: 504 IELYAYYLPNAPLSNLINIFIALCELDSTLYFICNLDDFKFLADTIQHIPLPLRTRYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
+PV+ ++ L ++A SK + R+I P ++P A L LESI
Sbjct: 564 CAPVNRKMPLTCSMLLKYARQCSKNEPATVLWLRRQINWPP--KIPLNLADLLRLESIFD 621
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
VLD+Y+WLS+R+ + FPD + S + +IE+
Sbjct: 622 VLDVYLWLSYRMPDLFPDADAVKSLQEELDKIIEQ 656
>gi|321262547|ref|XP_003195992.1| RNA helicase like protein [Cryptococcus gattii WM276]
gi|317462467|gb|ADV24205.1| RNA helicase like protein, putative [Cryptococcus gattii WM276]
Length = 828
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 241/449 (53%), Gaps = 53/449 (11%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ +D VIDEIQMLG RG ++T+A+LG+ A ++HLCGD V L++ ++ GDD+ V
Sbjct: 310 AGFDVVVIDEIQMLGDGQRGGAWTKAVLGVAAKDIHLCGDETTVDLLRGMIASLGDDLTV 369
Query: 66 QSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
Y RL+PL N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LP
Sbjct: 370 HKYNRLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALP 429
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PETR QA FND +LVASDA+GMGLNL I R+IF ++ KF+G L++ ++K
Sbjct: 430 PETRAEQARDFNDEDGASKILVASDAVGMGLNLKIRRVIFESLSKFNGKSEVPLSLMQIK 489
Query: 185 QIAGRAGRYGS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
QIAGRAGR+ + + P G T L +DLP+L + + P + A
Sbjct: 490 QIAGRAGRFKTGNDLTKISDIATPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAK 549
Query: 229 L-FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-- 284
L P L+ + S L P S+ Y +L HF AK A + L +A +++
Sbjct: 550 LEIPTSGLVQL-STLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDR 608
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV------------------QLRE 326
L L E LFC +PV+ D+ + + +Y+++G V Q+ E
Sbjct: 609 LSLGEMDLFCFAPVNTRDERAKEIFINLIEDYAEEGCVLVDNIFEGLQTNMLDILNQVHE 668
Query: 327 IFT-------PGTLQVPKTQ------AALRELESIHKVLDLYVWLSFRLEESFPDRELAA 373
I + PG + K +L LE++HK L LY+WLSFRLE +FPDR A
Sbjct: 669 ILSTLPPMPLPGQIGSKKASIPPFIINSLPVLETLHKTLVLYIWLSFRLEVAFPDRPKAV 728
Query: 374 SQKAICSMLIEEFLERLGWQKPRVKKVTP 402
K C ++E+ LER+ KP K P
Sbjct: 729 EYKVKCEEVLEDCLERMPGLKPSKKSKGP 757
>gi|402079298|gb|EJT74563.1| ATP-dependent RNA helicase SUV3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 783
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 229/421 (54%), Gaps = 27/421 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+ + RGF++ +A LG+ A E+HLCG+ V LIQ + Q GD + Y
Sbjct: 308 DVAVIDEIQMITNEDRGFAWAQAFLGVQAREVHLCGEERTVDLIQNLCQRIGDTCIIHKY 367
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLSPL + LG N++ GD +V+FSR ++RLK IE + C++VYGSLPPETR
Sbjct: 368 NRLSPLQTMRRSLGDLRNLEKGDAVVSFSRVGLHRLKAGIEKQTGRRCAVVYGSLPPETR 427
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA+ FND +++D LVASDAIGMGLNL I R+IF + KFDG RDL +P++KQI G
Sbjct: 428 AEQASLFNDPDNDYDYLVASDAIGMGLNLEIKRVIFEAITKFDGTMHRDLGIPDIKQIGG 487
Query: 189 RAGRY---------GSKFPV------------GEVTCLDSEDLPLLHKSLLEPSPMLESA 227
RAGR+ GS P+ G VT LD + L + + P ++ A
Sbjct: 488 RAGRFRSAAHEIKGGSATPLLDAPADRSEKPPGLVTTLDPKHLARVQHAFTVEVPQIKVA 547
Query: 228 GLFPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 286
G+ P I +YS P + L +L + AK+S +F + +E ++VA I+ LP+
Sbjct: 548 GILPPASSIEAIYSLFPPGTPLSHVLVKIRQLAKVSSEFFLCDIKEWIEVADAIEGLPMG 607
Query: 287 LHEKYLFCISPVDMND----DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAAL 342
+H++ +P + + ++ ++Q + + E+ +V +A L
Sbjct: 608 IHDRCTLLNAPTSRDTMESLKVFAKCISQQKGGHLLEIEELDLEVLERDPKEVTNPRAFL 667
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTP 402
LE HK + LY+WLS+R + FP + LA K I+E L+R + +P +
Sbjct: 668 DRLEVAHKSVTLYLWLSYRYQGIFPSQTLAFEVKKRLEARIDEQLDRFDY-RPEARAAAT 726
Query: 403 R 403
R
Sbjct: 727 R 727
>gi|195446006|ref|XP_002070584.1| GK10952 [Drosophila willistoni]
gi|194166669|gb|EDW81570.1| GK10952 [Drosophila willistoni]
Length = 768
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 228/378 (60%), Gaps = 13/378 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ ++ L+++I + TG
Sbjct: 271 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAGSLELLEKICETTG 330
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS N++ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 331 ETVEVRRYDRLTELTVENTALGSLDNVRPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 389
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF T+ + E+
Sbjct: 390 GGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTLNERGEREI 449
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT ++DL L + L + L+ AGL P D
Sbjct: 450 DTISVSAALQIAGRAGRFRTQWEHGYVTAFKADDLSTLQRILGQTPEPLKQAGLHPTADQ 509
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 510 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIDDFKFLAEMIQHVPLPLRARYVFC 569
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHK 350
+P++ + A YS+ + R P ++PKT L LE+I
Sbjct: 570 CAPINRKMPFVCSMFLKIARQYSRNEPITFDFIKRNCGWP--FKLPKTILDLVHLEAIFD 627
Query: 351 VLDLYVWLSFRLEESFPD 368
V+DLY+WLS+R + FP+
Sbjct: 628 VMDLYLWLSYRFMDLFPE 645
>gi|119192696|ref|XP_001246954.1| hypothetical protein CIMG_00725 [Coccidioides immitis RS]
gi|392863804|gb|EAS35434.2| mitochondrial ATP-dependent RNA helicase Suv3 [Coccidioides immitis
RS]
Length = 724
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 231/410 (56%), Gaps = 24/410 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + D AVIDEIQM+G + RG+++TRALLG A E+HLCG+ VPLI+++ +TG
Sbjct: 261 MAPLGLEVDVAVIDEIQMIGDRQRGWAWTRALLGAPAKEIHLCGEERVVPLIRELAALTG 320
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL+P+ L G+ +Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 321 DKLEIHNYKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 380
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E R++QA FN+ +++D LVASDAIGMGLNL+ RIIF ++ K V L L+
Sbjct: 381 YGGLPAEIRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLS 440
Query: 180 VPEVKQIAGRAGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPM 223
V +VKQI GRAGRY S VG VTCL+ DLP + K L +
Sbjct: 441 VSQVKQIGGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEP 500
Query: 224 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+ +AG+ P +I ++ P + + L L N + FF V ++D +
Sbjct: 501 INAAGILPQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDV 560
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFAT---NYSKKGIVQLREIFTPGTLQVP--K 337
P L + +K +F +P D S+ L FAT + ++ + E+ L VP
Sbjct: 561 PGLSVTDKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLE-ILDVPVSG 619
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ LR LES+H+ L LY+WLSFR+ F DR LA K + M ++ L
Sbjct: 620 NKNYLRSLESLHRSLVLYLWLSFRIGGIFTDRTLATHVKELVEMKMDRAL 669
>gi|389634037|ref|XP_003714671.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|351647004|gb|EHA54864.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|440474806|gb|ELQ43528.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae Y34]
gi|440487290|gb|ELQ67087.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae P131]
Length = 757
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 239/423 (56%), Gaps = 31/423 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + D AVIDEIQM+ RG+++T+A+LGI A E+HLCG+ V LI+++ + G
Sbjct: 275 MAPLNTVVDVAVIDEIQMIADPDRGWAWTQAVLGIQAREVHLCGEERTVDLIKRLAESMG 334
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ V YERLSPL P+N LG +Q GD +V FSR ++ LK+ IE + C+IV
Sbjct: 335 DECIVHQYERLSPLEPMNSSLGGDLKKLQKGDAVVAFSRIGLHALKRGIEKQTGKRCAIV 394
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR QA FND +E+D +VASDAIGMGLNL I R++F T KFDG E R L
Sbjct: 395 YGSLPPETRAEQAALFNDPDNEYDYIVASDAIGMGLNLEIRRVVFDTTNKFDGSERRFLG 454
Query: 180 VPEVKQIAGRAGRYG---------------------SKFPVGEVTCLDSEDLPLLHKSLL 218
E+KQI GRAGR+ S+ VG VTC+D DL + K+
Sbjct: 455 ESEIKQIGGRAGRFRSAAQAIQSATEGDEEIARRAVSRPSVGYVTCVDDGDLRRIQKAFE 514
Query: 219 EPSPMLESAGLFPNFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 277
P +++AGL P +I +S D+ L IL E + S++YF N ++ ++ A
Sbjct: 515 VEVPPIKAAGLLPPAAIIEKFSSYFAQDTPLSHILLKIREVVRTSDDYFVCNFDDWIEAA 574
Query: 278 TVIDQLPLRLHEKYLFCISPVDMNDD----ISSQGLTQFATNY--SKKGIVQLREIFTPG 331
+I P+ + ++ + +P+D I ++ +++ + S G+ +L +
Sbjct: 575 DIIQAFPMPISDRLVLLSAPLDYKTKEFMRICAKCVSELKDGHLLSLDGL-ELEVLDVDD 633
Query: 332 T-LQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
T + Q L +LE++HK L LY+WLS+R + F ++LA K++ I E L+++
Sbjct: 634 TCFNKYRAQEQLNKLETLHKCLILYLWLSYRYQGVFVSQDLAFHAKSLVEEKIRERLDKV 693
Query: 391 GWQ 393
++
Sbjct: 694 DFR 696
>gi|303312633|ref|XP_003066328.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105990|gb|EER24183.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 724
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 231/410 (56%), Gaps = 24/410 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + D AVIDEIQM+G + RG+++TRALLG A E+HLCG+ VPLI+++ +TG
Sbjct: 261 MAPLGLEVDVAVIDEIQMIGDRQRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTG 320
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL+P+ L G+ +Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 321 DKLEIHNYKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 380
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E R++QA FN+ +++D LVASDAIGMGLNL+ RIIF ++ K V L L+
Sbjct: 381 YGGLPAEIRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLS 440
Query: 180 VPEVKQIAGRAGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPM 223
V +VKQI GRAGRY S VG VTCL+ DLP + K L +
Sbjct: 441 VSQVKQIGGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEP 500
Query: 224 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+ +AG+ P +I ++ P + + L L N + FF V ++D +
Sbjct: 501 INAAGILPQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDV 560
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFAT---NYSKKGIVQLREIFTPGTLQVP--K 337
P L + +K +F +P D S+ L FAT + ++ + E+ L VP
Sbjct: 561 PGLSVTDKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLE-ILDVPVSG 619
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ LR LES+H+ L LY+WLSFR+ F DR LA K + M ++ L
Sbjct: 620 NKNYLRSLESLHRSLVLYLWLSFRIGGIFTDRTLATHVKELVEMKMDRAL 669
>gi|198438453|ref|XP_002129406.1| PREDICTED: similar to suppressor of var1, 3-like 1 [Ciona
intestinalis]
Length = 677
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 224/383 (58%), Gaps = 18/383 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ Y+ A+IDEIQML RG+++TRA LG+CA E+H+CG+ AV +++Q+
Sbjct: 256 MTNLFRRYEIAIIDEIQMLSDMERGWAWTRAFLGVCAPEIHVCGEARAVDIVRQLADECN 315
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D +V +Y+RL L P+ SF+N++ GDCI+ F++ IY +K + S G + +I+Y
Sbjct: 316 DSFEVVTYKRLGKLRVKKHPVESFNNLKPGDCIICFNKSRIYSYQKKLNSLGIN-SAIIY 374
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND +VL+ +DAIGMGLNLNI RIIFS T+ K EL
Sbjct: 375 GSLPPRTKLEQAKKFNDKDHPCNVLITTDAIGMGLNLNIRRIIFSDLYKTTLTKGGRREL 434
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+ LT QIAGRAGR+ S++ GEVT L S+ +PLLHK L + +P ++ AGL P F+L
Sbjct: 435 KQLTTSHALQIAGRAGRFNSQYKDGEVTSLSSKHMPLLHKLLRQTAPEIKVAGLHPTFEL 494
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFF-------ANCEEVLKVATVIDQLPLRLH 288
+ ++ + SL ++ F+ +++E FF + E L+ A + LR
Sbjct: 495 LAEFANVLNTKSLSEVIVMFIGMCEMNEKLFFLCSLKECHDIAEYLEDANACRGISLR-- 552
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV---QLREIFTPGTLQVPKTQAALREL 345
+ Y FC SP+ + L F +Y+ V ++ + Q K++ + L
Sbjct: 553 DMYTFCSSPISSGNKEVLSVLAAFVNSYANNVAVTEQDVKSLLRWPPPQQAKSKTEIERL 612
Query: 346 ESIHKVLDLYVWLSFRLEESFPD 368
ES+H+VL LY+WLS+R ++ F D
Sbjct: 613 ESLHEVLRLYMWLSYRFKDIFRD 635
>gi|320033564|gb|EFW15511.1| ATP-dependent RNA helicase SUV3 [Coccidioides posadasii str.
Silveira]
Length = 724
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/410 (38%), Positives = 231/410 (56%), Gaps = 24/410 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + + AVIDEIQM+G + RG+++TRALLG A E+HLCG+ VPLI+++ +TG
Sbjct: 261 MAPLGVEVEVAVIDEIQMIGDRQRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTG 320
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL+P+ L G+ +Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 321 DKLEIHNYKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 380
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E R++QA FN+ +++D LVASDAIGMGLNL+ RIIF ++ K V L L+
Sbjct: 381 YGGLPAEIRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLS 440
Query: 180 VPEVKQIAGRAGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPM 223
V +VKQI GRAGRY S VG VTCL+ DLP + K L +
Sbjct: 441 VSQVKQIGGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEP 500
Query: 224 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+ +AG+ P +I ++ P + + L L N + FF V ++D +
Sbjct: 501 INAAGILPQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDV 560
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFAT---NYSKKGIVQLREIFTPGTLQVP--K 337
P L + +K +F +P D S+ L FAT + ++ + E+ L VP
Sbjct: 561 PGLSVTDKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLE-ILDVPVSG 619
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ LR LES+H+ L LY+WLSFR+ F DR LA K + M ++ L
Sbjct: 620 NKNYLRSLESLHRSLVLYLWLSFRIGGIFTDRTLATHVKELVEMKMDRAL 669
>gi|452825753|gb|EME32748.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 739
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 231/388 (59%), Gaps = 17/388 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +Y+ AV+DEIQM+G RG+S+TR LLG+ A+E+H+CGDP+ L++Q+ Q G
Sbjct: 298 MLSTEEEYEVAVLDEIQMIGDAQRGWSWTRGLLGVQASEVHVCGDPSTKELLKQLAQRCG 357
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ + + Y R + L L G + +Q GD IV FSR +Y K +E C ++
Sbjct: 358 DEFEEKEYFRQTSLEISRKSLNGDLNKLQDGDTIVVFSRRDVYETKYRVEQTTGKRCCVI 417
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV----EL 175
YGSLPPETR+ QA FND SE+ +LVA+DAIGMGLNLNI RIIF++++KF G+
Sbjct: 418 YGSLPPETRSYQARLFNDPESEYKILVATDAIGMGLNLNIKRIIFASLEKFHGLSSSARK 477
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
L+ ++QIAGRAGR S +P GE TCL D+P L ++ P ++SAGL P D
Sbjct: 478 EPLSFALIRQIAGRAGRAFSIYPHGEATCLYEHDIPRLQEAFQGSVPSIDSAGLMPTLDQ 537
Query: 236 IYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCE----EVLKVATVIDQL-PLRLHE 289
+ +++ + D+ L +L+ F E AKL F+ CE E+ ++A ++ Q L L E
Sbjct: 538 MELFASVVGDNVKLSTLLDLFAEYAKLDN--LFSLCEQKFLEMRRIARLLQQAGTLSLKE 595
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIH 349
++ FC +PV+++D + L FA N + +L G L TQ L++LES +
Sbjct: 596 QFEFCQAPVNISDPFLMKYLLSFAKNVATGSRSELTVRPYQGKLL---TQLDLQKLESRY 652
Query: 350 KVLDLYVWLSFRL-EESFPDRELAASQK 376
++ DLY +LS + E FPD ++A + K
Sbjct: 653 RIFDLYSYLSEKFGREFFPDYQVALAYK 680
>gi|340960248|gb|EGS21429.1| hypothetical protein CTHT_0032870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 797
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 238/434 (54%), Gaps = 25/434 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+ RG+++T+A+LG+ A E+HLCG+ V LIQ I G
Sbjct: 298 MTPLNTRVDVAVIDEIQMIANDERGWAWTQAVLGVQAKEVHLCGEERVVDLIQNICARLG 357
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ V Y RL+ L V N GSF N++ GD +V+FSR +++LK IE C+IV
Sbjct: 358 EKCIVHRYNRLNGLEVEKNSLKGSFRNLRKGDAVVSFSRLTLHQLKAGIEHDTGRRCAIV 417
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR QA FND +E+D LVASDAIGMGLNL + R++F T+ KFDG LR L+
Sbjct: 418 YGSLPPETRASQAALFNDPDNEYDFLVASDAIGMGLNLEVRRVVFETVHKFDGTNLRQLS 477
Query: 180 VPEVKQIAGRAGRYGSKF-------------PVGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY + P G VT LD EDL ++ K+ +++
Sbjct: 478 VPEIKQIGGRAGRYRTAAKANVSDEEANQPPPPGLVTALDDEDLRVIRKAFNTDVSPIKT 537
Query: 227 AGLFPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
AGL P ++ ++ P + +L E +LS + + + L++A +I L
Sbjct: 538 AGLRPPPAVLERFHAYFPPKTPTTFVLARLREMGRLSGLFHMCDISDALQIAELIKPYDL 597
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAA-- 341
+ ++ +F P+++ D L FA ++ G L + L+ P+ +A
Sbjct: 598 SIPDRCVFLHVPINLRDSKQVDVLKAFAKCVAEMGSGHLLDFPELDLEALEAPRPKAGQQ 657
Query: 342 ----LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW--QKP 395
LR LES+H+ + +Y+WLS+R + F + LA K + I + LE+L + +K
Sbjct: 658 AQDYLRRLESLHQAITMYLWLSYRYQGVFQSQNLAFKVKQMVEDKIADHLEQLNFVPEKH 717
Query: 396 RVKKVTPRPKLNSA 409
R ++ R K A
Sbjct: 718 RARRKFLREKAAQA 731
>gi|358383047|gb|EHK20716.1| hypothetical protein TRIVIDRAFT_171151 [Trichoderma virens Gv29-8]
Length = 629
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 232/413 (56%), Gaps = 23/413 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQM+ RG ++T A+LG+ A E+H+CG+ AV +IQ + GD V
Sbjct: 168 FDVAVIDEIQMIADADRGNAWTSAVLGVQAKEVHVCGEERAVKVIQAMCASIGDKCVVHR 227
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERLSPL ++ L G ++++Q GD IV FSR ++ LK+ IE C+I+YGSLPPE
Sbjct: 228 YERLSPLKTMDKALNGDYNSLQKGDAIVAFSRLNLHALKQRIEQNTGRRCAIIYGSLPPE 287
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +QA FND +++D +VASDAIGMGLNL I R+I ++ K+DG + R LT PE+KQI
Sbjct: 288 VRAQQAALFNDPDNDYDFVVASDAIGMGLNLEIRRVILESVTKYDGSQNRLLTFPEIKQI 347
Query: 187 AGRAGRYGSKF----------PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GRAGRY S VG VT +D DL + ++ + +E+A + P ++
Sbjct: 348 GGRAGRYRSAQNPDGSADETEKVGLVTTMDRADLKSVQRAFQKSVDDIEAACIQPPAGIV 407
Query: 237 YMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
+ S PD+ L IL+ E A +S Y ++L++A +I +PL +H++ FC
Sbjct: 408 ERFASYFPPDTPLSFILKRIQETATVSSLYRIGLGSDILEIADIIQDIPLTIHDRLTFCY 467
Query: 296 SPVDMNDDISS---QGLTQFATNYSKKGIVQLREI------FTPGTLQVPKTQAALRELE 346
PV + D + + L Q SK ++ + EI QV + L +LE
Sbjct: 468 LPVALRADRAIDVLRALAQVVATNSKGDLLDIEEIPLEYLDLKMEDFQV--KEKYLAKLE 525
Query: 347 SIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
S+H ++ YVWLS+R F + LA +++ + E LERL + +++
Sbjct: 526 SLHVAVNQYVWLSYRYSGVFRSQALAFHVRSLVEEKLMETLERLNFSDEHLER 578
>gi|317158967|ref|XP_001827445.2| ATP-dependent RNA helicase SUV3 [Aspergillus oryzae RIB40]
gi|391866410|gb|EIT75682.1| RNA helicase SUV3, DEAD-box superfamily [Aspergillus oryzae 3.042]
Length = 746
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 168/411 (40%), Positives = 236/411 (57%), Gaps = 27/411 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TG
Sbjct: 270 MVNLGQPYDVGVIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTG 329
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 330 DKLEIHRYERLNPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIV 389
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+
Sbjct: 390 YGSLPAEIRTQQASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLS 449
Query: 180 VPEVKQIAGRAGRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPML 224
VPE+KQIAGRAGRY S VG VT L+ DLP +H+++ +EP P +
Sbjct: 450 VPEIKQIAGRAGRYRSAAQQQKKGKAAEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-I 508
Query: 225 ESAGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+AG+FP + ++ P S L I++ ++ +++ +F + L A VID +
Sbjct: 509 TAAGVFPPEPIFQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTV 568
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KT 338
LR ++ F +P+ D S FA ++ +L +I L+ P
Sbjct: 569 SGLRFEDQMTFMAAPMHTRDISSRDVACAFAQCVAEHTGGRLLDIPDLNLEILEEPVSGN 628
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +LE +HK + LY WLSFR F DR LAA K L+EE + R
Sbjct: 629 KEYLHDLEILHKSVILYSWLSFRFGGVFTDRTLAAHVKE----LVEERMVR 675
>gi|340514593|gb|EGR44854.1| predicted protein [Trichoderma reesei QM6a]
Length = 786
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 155/412 (37%), Positives = 233/412 (56%), Gaps = 20/412 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + S +D AVIDEIQM+ RG ++T A+LG+ A E+H+CG+ AV +I+ + G
Sbjct: 316 MMPLNSRFDVAVIDEIQMIADHDRGNAWTTAVLGVQAKEVHVCGEERAVNVIKAMCASIG 375
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V YERLSPL ++ L G +S++Q GD IV FSR ++ LK+ IE + C+I+
Sbjct: 376 DKCVVHRYERLSPLKTMDKALNGDYSSLQKGDAIVAFSRLNLHSLKQRIEEKTGRRCAII 435
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND ++++D +VASDAIGMGLNL I R++ ++ KFDG + R LT
Sbjct: 436 YGSLPPEVRAQQAALFNDPNNDYDFVVASDAIGMGLNLEIRRVVLESVTKFDGSQNRLLT 495
Query: 180 VPEVKQIAGRAGRYGSKF----------PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
PE+KQI GRAGRY S VG VT +D DL + ++ +E+A +
Sbjct: 496 FPEIKQIGGRAGRYRSAQNPDGSTDETEKVGLVTTMDKADLRSVQRAFQRTVDDIEAACI 555
Query: 230 FPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
P ++ + S PD+ L IL+ E A +S Y ++L++A +I +PL +H
Sbjct: 556 QPPAGIVERFASYFPPDTPLSYILKKIQETATVSSLYRIGLGNDILEIADIIQDIPLTIH 615
Query: 289 EKYLFCISPVDMNDDISSQ---GLTQFATNYSKKGIVQLREI---FTPGTLQ--VPKTQA 340
++ FC PV + + + + L + SK ++ + EI F + + Q
Sbjct: 616 DRMTFCYLPVALRAERAVEVLRALARIVATNSKGDLLDIEEIPLEFLDISFEEFAGTGQQ 675
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
L +LES+H ++ YVWLS+R F + LA + + + E LERL +
Sbjct: 676 YLSKLESLHVAVNQYVWLSYRYAGVFRSQALAFHVRTLVEEKLMETLERLNY 727
>gi|310795139|gb|EFQ30600.1| hypothetical protein GLRG_05744 [Glomerella graminicola M1.001]
Length = 761
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 159/407 (39%), Positives = 221/407 (54%), Gaps = 29/407 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AV+DEIQM+G RG+++T+A LG+ A E+HLCG+ V LI+ I GD V Y
Sbjct: 266 DVAVLDEIQMIGNSERGWAWTQAFLGVMAKEVHLCGEERVVDLIKSICSSIGDKCIVHRY 325
Query: 69 ERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSPL + LG+ + +Q GD IV F+R ++ LK AIE C+IVYGSLPPET
Sbjct: 326 QRLSPLQTMKESLGNDLTKLQKGDAIVAFNRIHLHGLKNAIEEATGRRCAIVYGSLPPET 385
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +++D LVASDAIGMGLNL I R+IF T K DG + R LT EVKQI
Sbjct: 386 RAQQAALFNDPDNDYDFLVASDAIGMGLNLEIKRVIFETATKHDGTQFRTLTTSEVKQIG 445
Query: 188 GRAGRY-----------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF 230
GRAGR+ G K +G VT LD+EDLP++ K+ + LE A +
Sbjct: 446 GRAGRFKTARQAATDHNGTAHIEGKK--MGYVTTLDNEDLPIIEKAFNSETAPLEVASIH 503
Query: 231 PNFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE 289
P +I ++ PD+ L IL E A +SE Y E+ LK+A I + P+ + E
Sbjct: 504 PPAFIIEQFAEYFPPDTPLSFILLRLRELAPVSERYTVHVPEDNLKIADAIQEFPMTIQE 563
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI------FTPGTLQVPKTQAA-- 341
+ +P+ + + + L A S + L +I TL+ Q
Sbjct: 564 RITILHAPISLRESGQKEILQAIAKCISTRSDGALYDIGPINLELLDATLEDFNNQGRRY 623
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
L +E++H+ + LY+W+S+R F + LA K IE +LE
Sbjct: 624 LHSIETLHQAITLYLWVSYRFPNVFTSQALAFHVKDAVEEKIEFYLE 670
>gi|83776193|dbj|BAE66312.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 635
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 168/411 (40%), Positives = 236/411 (57%), Gaps = 27/411 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TG
Sbjct: 159 MVNLGQPYDVGVIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTG 218
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 219 DKLEIHRYERLNPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIV 278
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+
Sbjct: 279 YGSLPAEIRTQQASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLS 338
Query: 180 VPEVKQIAGRAGRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPML 224
VPE+KQIAGRAGRY S VG VT L+ DLP +H+++ +EP P +
Sbjct: 339 VPEIKQIAGRAGRYRSAAQQQKKGKAAEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-I 397
Query: 225 ESAGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+AG+FP + ++ P S L I++ ++ +++ +F + L A VID +
Sbjct: 398 TAAGVFPPEPIFQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTV 457
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KT 338
LR ++ F +P+ D S FA ++ +L +I L+ P
Sbjct: 458 SGLRFEDQMTFMAAPMHTRDISSRDVACAFAQCVAEHTGGRLLDIPDLNLEILEEPVSGN 517
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +LE +HK + LY WLSFR F DR LAA K L+EE + R
Sbjct: 518 KEYLHDLEILHKSVILYSWLSFRFGGVFTDRTLAAHVKE----LVEERMVR 564
>gi|238506895|ref|XP_002384649.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
gi|220689362|gb|EED45713.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
Length = 635
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/411 (40%), Positives = 236/411 (57%), Gaps = 27/411 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TG
Sbjct: 159 MVNLGQPYDVGVIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTG 218
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 219 DKLEIHRYERLNPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIV 278
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+
Sbjct: 279 YGSLPAEIRTQQASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLS 338
Query: 180 VPEVKQIAGRAGRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPML 224
VPE+KQIAGRAGRY S VG VT L+ DLP +H+++ +EP P +
Sbjct: 339 VPEIKQIAGRAGRYRSAAQQQKKGKAAENDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-I 397
Query: 225 ESAGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+AG+FP + ++ P S L I++ ++ +++ +F + L A VID +
Sbjct: 398 TAAGVFPPEPIFQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTV 457
Query: 284 P-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KT 338
LR ++ F +P+ D S FA ++ +L +I L+ P
Sbjct: 458 SGLRFEDQMTFMAAPMHTRDISSRDVACAFAQCVAEHTGGRLLDIPDLNLEILEEPVSGN 517
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +LE +HK + LY WLSFR F DR LAA K L+EE + R
Sbjct: 518 KEYLHDLEILHKSVILYSWLSFRFGGVFTDRTLAAHVKE----LVEERMVR 564
>gi|336471022|gb|EGO59183.1| hypothetical protein NEUTE1DRAFT_128634 [Neurospora tetrasperma
FGSC 2508]
gi|350292099|gb|EGZ73294.1| hypothetical protein NEUTE2DRAFT_107697 [Neurospora tetrasperma
FGSC 2509]
Length = 796
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 230/412 (55%), Gaps = 32/412 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+ + RG+++T+A+LG A ELHLCG+ V LIQ++ GD V Y
Sbjct: 299 DVAVIDEIQMIADEHRGWAWTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRY 358
Query: 69 ERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RL+PL+P+ +G+ F N+Q GD +++FSR ++ LK IE C+IVYGSLPPET
Sbjct: 359 QRLNPLLPMEQAVGTDFKNLQKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPET 418
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA FND ++E+D LVASDAIGMGLNL I R++F + KFDG+ R LT+PEVKQI
Sbjct: 419 RAAQAALFNDPNNEYDFLVASDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIG 478
Query: 188 GRAGRYG--------------------SKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLES 226
GRAGRY SK+ G VT +D +DL ++ K L + + +
Sbjct: 479 GRAGRYRTATDAVRSGKEEETSATSAFSKWGAPGFVTAMDEQDLGVIRKHLQNDAKPIAA 538
Query: 227 AGLFPNFDLIYMYSRL-HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
AG+ P +I ++ L PD L +L E A+LS ++ + E L ++ V+ + L
Sbjct: 539 AGILPPSHIIERFASLFSPDIPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFDL 598
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQLREI------FTPGTLQVP 336
++++ + +PV + + L FA N S ++++ E+ L
Sbjct: 599 SIYDRSVLLTAPVSLREKGQKDILRAFAWSIANLSGGHLLEIPEVDLEALDVDASQLDPQ 658
Query: 337 KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+ L LE +HK + LY+WLS+R F ++LA K++ I LE
Sbjct: 659 GQKNYLLRLEGLHKAVTLYLWLSYRYRGVFVSQKLAFHVKSLVEEKITNCLE 710
>gi|85107578|ref|XP_962405.1| hypothetical protein NCU06371 [Neurospora crassa OR74A]
gi|28924010|gb|EAA33169.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 791
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 230/412 (55%), Gaps = 32/412 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+ + RG+++T+A+LG A ELHLCG+ V LIQ++ GD V Y
Sbjct: 294 DVAVIDEIQMIADEHRGWAWTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRY 353
Query: 69 ERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RL+PL+P+ +G+ F N+Q GD +++FSR ++ LK IE C+IVYGSLPPET
Sbjct: 354 QRLNPLLPMEQAVGTDFKNLQKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPET 413
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA FND ++E+D LVASDAIGMGLNL I R++F + KFDG+ R LT+PEVKQI
Sbjct: 414 RAAQAALFNDPNNEYDFLVASDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIG 473
Query: 188 GRAGRYG--------------------SKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLES 226
GRAGRY SK+ G VT +D +DL ++ K L + + +
Sbjct: 474 GRAGRYRTATDAVRSGKEEETSATSAFSKWGAPGFVTAMDDQDLGVIRKHLQNDAKPIAA 533
Query: 227 AGLFPNFDLIYMYSRL-HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
AG+ P +I ++ L PD L +L E A+LS ++ + E L ++ V+ + L
Sbjct: 534 AGILPPSHIIERFASLFSPDIPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFDL 593
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQLREI------FTPGTLQVP 336
++++ + +PV + + L FA N S ++++ E+ L
Sbjct: 594 SIYDRSVLLTAPVSLREKGQKDILRAFAWSIANLSGGHLLEIPEVDLEALDVDASQLDPQ 653
Query: 337 KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+ L LE +HK + LY+WLS+R F ++LA K++ I LE
Sbjct: 654 GQKNYLLRLEGLHKAVTLYLWLSYRYRGVFVSQKLAFHVKSLVEEKITNCLE 705
>gi|150865139|ref|XP_001384238.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149386395|gb|ABN66209.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 640
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/408 (38%), Positives = 237/408 (58%), Gaps = 33/408 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG +T ALLG+ A E+HLCG+ +AVPLI+++ ++TGD+V+V+ Y
Sbjct: 235 DVCVIDEIQMIADPGRGSIWTNALLGVLAKEIHLCGEESAVPLIKKLAKMTGDEVEVKQY 294
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L + + S++ ++ GDC+V FS+H I +LK IE R +VYG+LPPE R
Sbjct: 295 KRLGELKVTDKAI-SYNKLEKGDCLVAFSKHKILQLKCEIERRTNLSVGVVYGALPPEIR 353
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+ Q+ +FN S EFD+LVASDA+GMGLNL I RIIF T++KFDG E+ +LTV VKQIAG
Sbjct: 354 SEQSRKFN--SGEFDILVASDAVGMGLNLKIKRIIFQTVRKFDGKEMTNLTVSSVKQIAG 411
Query: 189 RAGRYGSK--FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPD 245
RAGRY G V+ L S DL + +++ P LE A ++P FD+ Y ++ D
Sbjct: 412 RAGRYSETHGMQTGYVSALTSRDLMYIKQAMNAPIRELEKAAIWPTFDIWKQYMAKFSKD 471
Query: 246 SSLYGILEHFLENA--KLSENYFFANCE---EVLKV---ATVIDQLPLRLHEKYLFCISP 297
SLY L F K E+Y+ A + E++K+ + ++P + ++ + + P
Sbjct: 472 ESLYDSLLQFERETKDKRMEHYYVATVDDKAELMKLFLRENLYKKVP--IDDQLILSLCP 529
Query: 298 VDMNDDISSQGLTQFATNYSKK------------GIVQLREIFTP---GTLQVPKTQAAL 342
+++N +SS +T+ Y K G + + + T ++ K+ A L
Sbjct: 530 INLN--MSSPEVTEMTFKYIKNVHQRTTKTIFDFGFIDHKLLTTSPNIASVHFDKSAALL 587
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
R LE HKV+ +++WLS R F D+E A K + I++ L L
Sbjct: 588 RLLEDHHKVVLMFLWLSQRFPTLFVDKESATELKTLIEKRIQQELSHL 635
>gi|171690328|ref|XP_001910089.1| hypothetical protein [Podospora anserina S mat+]
gi|170945112|emb|CAP71223.1| unnamed protein product [Podospora anserina S mat+]
Length = 815
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 232/425 (54%), Gaps = 41/425 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AV+DEIQM+ + RG+++T+A+LG+ A ELHLCG+ V LIQ + GD V Y
Sbjct: 306 DVAVVDEIQMIASEDRGWAWTQAVLGLQAKELHLCGEDRVVELIQDLCARIGDRCIVHRY 365
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RL+PL ++ L G F N++ GD +V FSR A+++LK IE C+IVYGSLPPET
Sbjct: 366 QRLNPLETMSKSLRGDFRNLEKGDAVVAFSRVALHKLKAGIEQATGKRCAIVYGSLPPET 425
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND ++E+D LVASDAIGMGLNL I R+IF + KFDG ++R LTVPE+KQI
Sbjct: 426 RAQQAALFNDPNNEYDYLVASDAIGMGLNLEIKRVIFESSSKFDGNKVRSLTVPEIKQIG 485
Query: 188 GRAGRY---------------GSKFPV--------GEVTCLDSEDLPLLHKSLLEPSPML 224
GRAGRY G + V G VT D DL + + + + +
Sbjct: 486 GRAGRYRTASAEIASAQEGAAGGEEAVEAKVESNTGWVTAFDFRDLQDIQNAFQKEAKPI 545
Query: 225 ESAGLFPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
E+AGLFP ++I ++ P + +L E A+LS + + + L++A I
Sbjct: 546 ETAGLFPPANIIERFHTYFPPRTPTSFVLTRLRELARLSPRFHLCDFDTALEIADAIQPY 605
Query: 284 PLRLHEKYLFCISPV------DMNDDISSQGLTQFATNYSKKGIVQL----------REI 327
L + ++ +F PV D + + L FA ++ G L ++
Sbjct: 606 NLSVADRCVFLNCPVSFRVSRDGESNGQREALQAFAKCVAEMGSGHLLDFDCIDLSILDM 665
Query: 328 FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ + A L+ LE +H+++ +Y+WLS+R E F + +A K I I EFL
Sbjct: 666 DEEKRMTMFNNPAYLQSLERLHQIITMYLWLSYRYEGVFQSQSMAFKVKEIVEDRITEFL 725
Query: 388 ERLGW 392
++L +
Sbjct: 726 DKLTY 730
>gi|324504471|gb|ADY41932.1| ATP-dependent RNA helicase SUV3 [Ascaris suum]
Length = 781
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 231/386 (59%), Gaps = 9/386 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQML + RG+++TRALLG+ A+E+HLCG+ +A+ +++++L G+ V+V Y
Sbjct: 302 DVAVIDEIQMLRDEQRGWAWTRALLGVAADEVHLCGEASAINIVRELLNPIGEHVEVHEY 361
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R + L LG+ N+Q GDCIV FSR AI+ + K +E G +++YG LPP T+
Sbjct: 362 KRKTSLSLAPHALGTLDNVQDGDCIVCFSRRAIFSVTKQLEKIGVK-PAVIYGDLPPGTK 420
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK--QI 186
QA +FND + +VLVA+DAIGMGLNLNI RIIF ++ + EL +P QI
Sbjct: 421 LSQAGKFNDPNDATNVLVATDAIGMGLNLNIRRIIFYSLIRPPNGEL----IPNYAALQI 476
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR+G+ + G+V + ED+ +L + L +P +ES G+ P F+ + +S P++
Sbjct: 477 AGRAGRFGTVYEEGKVMTVREEDMGILKEILSQPVSPIESVGIAPTFEQLETFSFHLPNA 536
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS 306
S +L+ F+ +++ +F ++ +A +ID +PL L +Y FCI+PV+ ++ +++
Sbjct: 537 SFINLLDIFVSVCSITDRFFICTVNQMKSLAELIDYIPLPLKVRYTFCIAPVNPDEKLAA 596
Query: 307 QGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEE 364
+ A +S + + + P+ L LE ++ ++D+Y+WLS R +
Sbjct: 597 SAFVKMARRFSSGQALTFDWLCGVIGWPISPPEKLIDLVRLEQVYGIVDVYLWLSLRFPD 656
Query: 365 SFPDRELAASQKAICSMLIEEFLERL 390
FPD + + ++IE+ + R+
Sbjct: 657 MFPDETEVRTLERQLDLVIEDGVTRI 682
>gi|342872115|gb|EGU74512.1| hypothetical protein FOXB_14957 [Fusarium oxysporum Fo5176]
Length = 763
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 236/434 (54%), Gaps = 39/434 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQML RG ++T ALLG+ A E+HLCG+ V LIQ I GD V
Sbjct: 295 FDVAVIDEIQMLADPDRGNAWTTALLGVQAKEVHLCGEERTVSLIQSICAGIGDKCIVHR 354
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RLSPL P+N L G +S ++ GD IV FSR ++ LK+ IE + C+I+YGSLPPE
Sbjct: 355 YDRLSPLEPMNDALDGDYSRLEKGDAIVAFSRLNLHALKRTIEKKTGRRCAIIYGSLPPE 414
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +QA FND +++D +VASDAIGMGLNL I R+I + KFDG R LT PE+KQI
Sbjct: 415 VRVQQAALFNDPDNDYDFIVASDAIGMGLNLEIRRVILEAVAKFDGSHNRMLTYPELKQI 474
Query: 187 AGRAGRYGS-----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
GRAGRY + + VG VT +D++DL +H++ +E+A +
Sbjct: 475 GGRAGRYRTVRNAAEAGTNADVAVEEETKVGYVTTMDTQDLRSVHRAFGAKVDDIEAAYI 534
Query: 230 FPNFDLIYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
P I +S P + L IL E A +S+ Y + L++A I +PL ++
Sbjct: 535 SPPAAAIERFSTYFPKGTPLSFILMRIRELASVSKQYRIHISPDKLEIADHIQDIPLTIY 594
Query: 289 EKYLFCISPVDMNDDISS---QGLTQFATNYSKKGIVQLREI-----------FTPGTLQ 334
++ LF P++ + + L + N G+++++EI F +++
Sbjct: 595 DRLLFTNLPINARAQNAVPVLRALARIVANSEDGGLLKIKEIPLENLEIDFKTFKGTSME 654
Query: 335 VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
L LES+H ++ Y+WLS+R F D++LA +++ + + LERL + +
Sbjct: 655 Y------LHRLESLHAAINQYIWLSYRFSGLFRDQKLAFHVRSLVEEKLIDTLERLDFTE 708
Query: 395 PRVKKVTPRPKLNS 408
+K R ++ +
Sbjct: 709 SDLKGFRSRNRMEA 722
>gi|258574047|ref|XP_002541205.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901471|gb|EEP75872.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 462
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 235/410 (57%), Gaps = 26/410 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + D AVIDEIQM+G RG+++TRALLG A E+HLCG+ VPLI+++ +TG
Sbjct: 1 MAPLGQEVDVAVIDEIQMIGDLHRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTG 60
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + Y+RL+PL+P++ L GS +Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 61 DKLTIHHYKRLNPLIPMSKSLKGSLRGLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 120
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K L+ L+
Sbjct: 121 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPSGLQRLS 180
Query: 180 VPEVKQIAGRAGRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPML 224
V +VKQI GRAGRY S VG VTCL+ DLP + K L +P P +
Sbjct: 181 VSQVKQIGGRAGRYRSAAEAIDSSLSPSEENQNVGLVTCLEEVDLPHIQKCLNADPEP-I 239
Query: 225 ESAGLFPNFDLIYMYS-RLHPDSSLYGILEHFLENAKLSENYFFANCE-EVLKVATVIDQ 282
+AG+ P +I +S R P + +L+ + A+ +F CE + V ++D
Sbjct: 240 SAAGILPLDSMILNFSNRFPPTTPFAYLLQRLWKVAQTHPRFFL--CELQSKTVQEILDS 297
Query: 283 -LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT- 338
+ L +K +F +P D ++ L FAT ++ L +I L P +
Sbjct: 298 VVGLSPADKLVFLSAPTSTADPTNALTLRAFATCVARHTSGSLLDIPELNLQILDAPVSG 357
Query: 339 -QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ LR LES+H+ L LY+WLSFR+ F DR LA K I M ++ L
Sbjct: 358 DKNYLRALESLHRSLVLYLWLSFRVGGIFTDRSLATHVKEIVEMKMDRAL 407
>gi|358396700|gb|EHK46081.1| hypothetical protein TRIATDRAFT_88541 [Trichoderma atroviride IMI
206040]
Length = 762
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 228/406 (56%), Gaps = 25/406 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQM+ RG ++T A+LG+ A E+H+CG+ AV +IQQ+ GD V
Sbjct: 300 FDVAVIDEIQMIADADRGNAWTAAVLGVQAKEVHVCGEERAVKVIQQMCASVGDKCVVHR 359
Query: 68 YERLSPLVPLNVPLGSFSNI-QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERLSPL ++ PL + N+ Q GD IV FSR ++ LK +IE + C+I+YGSLPPE
Sbjct: 360 YERLSPLKTMDKPLDNDYNLLQKGDAIVAFSRVNLHSLKTSIERKTGRRCAIIYGSLPPE 419
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +QA FND +++D +VASDAIGMGLNL I R+I ++ KFDG + R LT PE+KQI
Sbjct: 420 VRAQQAALFNDPDNDYDFVVASDAIGMGLNLEIRRVIMESVTKFDGSQNRLLTFPEIKQI 479
Query: 187 AGRAGRYGS----------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GRAGRY S VG VT ++ DL + ++ +++A + P ++
Sbjct: 480 GGRAGRYRSAQNPDGSTDESEKVGLVTTMERADLRSVQRAFQRTVEDIQAACIQPPAGIV 539
Query: 237 YMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
++ P D+ L IL+ E A +S Y ++L++A +I +PL +H++ FC
Sbjct: 540 ERFASYFPTDTPLSYILKKIQETATVSSLYKMGLGSDILEIADIIQDIPLTIHDRLTFCY 599
Query: 296 SPVDMNDDISS---QGLTQFATNYSKKGIVQLREI------FTPGTLQVPKTQAALRELE 346
PV + D + + L Q SK ++ + EI P Q L +LE
Sbjct: 600 LPVALRADRAVDVLRALAQVVATNSKGDLLDIEEIPLEFLDINPEDFS-GSGQQYLSKLE 658
Query: 347 SIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
++H L+ YVWLS+R F + LA + +++ E+ ++ L W
Sbjct: 659 ALHVALNQYVWLSYRYSGMFRSQALAFH---VRTLVEEKLMKTLEW 701
>gi|218194975|gb|EEC77402.1| hypothetical protein OsI_16164 [Oryza sativa Indica Group]
Length = 465
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/277 (44%), Positives = 185/277 (66%), Gaps = 1/277 (0%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DEIQM+ RG+++TRA+LG+ A+E+HLCGDP+ + ++++I TGDD++V
Sbjct: 174 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 233
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDCIV FSR I+ +K AIE KH C ++YG+LPPE
Sbjct: 234 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 293
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +QA FN+ +E+DVLVASDA+GMGLNLNI R++F ++ K++G + + +VKQI
Sbjct: 294 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 353
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
AGRAGR GS +P G T +DL L + L +P + GLFP F+ + ++ PD
Sbjct: 354 AGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 413
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
+ +L+ F EN ++ YF + E + KVA +++++
Sbjct: 414 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERI 450
>gi|195568145|ref|XP_002102078.1| GD19716 [Drosophila simulans]
gi|194198005|gb|EDX11581.1| GD19716 [Drosophila simulans]
Length = 758
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 222/374 (59%), Gaps = 9/374 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L + ++ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPEPIKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 564 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 623
Query: 353 DLYVWLSFRLEESF 366
DLY ++ E ++
Sbjct: 624 DLYRFMDLFPEAAY 637
>gi|194898433|ref|XP_001978803.1| GG12286 [Drosophila erecta]
gi|190650506|gb|EDV47761.1| GG12286 [Drosophila erecta]
Length = 712
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 223/374 (59%), Gaps = 9/374 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 219 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALNLLQKICETTG 278
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS N+ +GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 279 ETVEVRRYDRLTELTVENTALGSLDNVVSGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 337
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 338 GGLPPGTKLAQAAKFNDPTNSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 397
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT +EDL L + L + L+ AGL P D
Sbjct: 398 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKTEDLQTLQQILAQTPEPLKQAGLHPTADQ 457
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 458 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 517
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 518 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 577
Query: 353 DLYVWLSFRLEESF 366
DLY ++ E ++
Sbjct: 578 DLYRFMDLFPEAAY 591
>gi|125777467|ref|XP_001359616.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
gi|121989826|sp|Q295E6.1|SUV3_DROPS RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|54639364|gb|EAL28766.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
Length = 762
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 223/376 (59%), Gaps = 14/376 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAGALELLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L + L+ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPEPLKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I + ++PKT L LES+ V+
Sbjct: 564 CAPINRKMPFVCSMFLKIARQYSRNEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY R + FP+
Sbjct: 624 DLY-----RFMDLFPE 634
>gi|115532782|ref|NP_001040911.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
gi|74962468|sp|Q17828.2|SUV3_CAEEL RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|3874155|emb|CAA97429.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
Length = 721
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 226/389 (58%), Gaps = 13/389 (3%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 275 EVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYY 334
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL + + S+SNI+ GDCIV FS+ +I+ K +E G +++YG LPP T+
Sbjct: 335 ERKSPLAIADKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTK 393
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 394 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 449
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 450 RAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASF 509
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ D +S
Sbjct: 510 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAV 569
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A +S G E PK L E LE +++LD Y+WLS R +
Sbjct: 570 FVKMARRFS-TGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPDM 628
Query: 366 FPD----RELAASQKAICSMLIEEFLERL 390
PD RE + ++ +E F+ L
Sbjct: 629 LPDEPRVREASKHLDSMIQEGVESFMSLL 657
>gi|308491142|ref|XP_003107762.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
gi|308249709|gb|EFO93661.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
Length = 721
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 224/383 (58%), Gaps = 9/383 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ VIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+++ Y
Sbjct: 273 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEIRYY 332
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 333 DRKSPLTIADKAIESYSNIEPGDCIVCFSKKAVFFNSKKLEENGIK-PAVIYGDLPPGTK 391
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 392 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 447
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 448 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPIANVGIAPTYDQIETFSFHLPQASF 507
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ +D ++
Sbjct: 508 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAV 567
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A ++ G E PK + L E LE +++LD Y+WLS R +
Sbjct: 568 FVKMARRFA-TGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEILDQYMWLSMRFPDM 626
Query: 366 FPDRELAASQKAICSMLIEEFLE 388
PD I +I+E +E
Sbjct: 627 LPDEPRVREASKILDTMIQEGVE 649
>gi|322702017|gb|EFY93765.1| ATP-dependent RNA helicase SUV3 precursor [Metarhizium acridum CQMa
102]
Length = 717
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 243/438 (55%), Gaps = 25/438 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + +D AVIDEIQM+ RG ++T A+LG+ ANE+HLCG+ VPL+Q + G
Sbjct: 233 MVPLNTKFDVAVIDEIQMIADPERGNAWTTAVLGVQANEVHLCGEDRTVPLLQALCASIG 292
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V YERLSPL ++ + G +SN+Q GD IV FSR +++ LK+ IE+ C+I+
Sbjct: 293 DKCVVHRYERLSPLKTMDSAIKGDYSNLQKGDAIVAFSRLSLHVLKRNIETATGRRCAII 352
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND ++++D +VASDAIGMGLNL I R++ ++ KFDG + R LT
Sbjct: 353 YGSLPPEVRVQQAALFNDPNNDYDFVVASDAIGMGLNLEIRRVVLESITKFDGNQNRLLT 412
Query: 180 VPEVKQIAGRAGRY-------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 226
PE+KQI GRAGRY K VG VT +D DL + K+ + +E
Sbjct: 413 YPEIKQIGGRAGRYRTAQSAVGVNAEEAEKEKVGLVTTMDQADLRNVEKAFQKKVNDIEY 472
Query: 227 AGLFPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
A + P ++ + S PD+ L IL A + Y + L++A +I LPL
Sbjct: 473 ASIQPPAGIVERFASYFPPDTPLSFILMRIKAAATVGPRYRLNVSSDALEIADIIQDLPL 532
Query: 286 RLHEKYLFCISPVDMNDDISS---QGLTQFATNYSKKGIVQLREI---FTPGTLQ-VPKT 338
++++ FC PV + + + + L + N S ++ ++EI F ++ P
Sbjct: 533 TIYDRLTFCYLPVALRAEGAVDVLRALARVLANNSAGDLLSIKEIPLEFLEVKMEDYPGG 592
Query: 339 -QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRV 397
Q L +LE++H ++ Y+WLS+R F + LA + + + L+RL + + ++
Sbjct: 593 PQEYLSKLEALHVAINQYIWLSYRYAGMFASQALAFHVRHLVEEKLISTLDRLDFTEEQL 652
Query: 398 --KKVTPRPKLNSAVVSR 413
K+ R + S +SR
Sbjct: 653 EHKRKNKRRQARSRNMSR 670
>gi|195156822|ref|XP_002019295.1| GL12317 [Drosophila persimilis]
gi|194115886|gb|EDW37929.1| GL12317 [Drosophila persimilis]
Length = 764
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 223/376 (59%), Gaps = 14/376 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAGALELLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L + L+ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPDPLKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I + ++PKT L LES+ V+
Sbjct: 564 CAPINRKMPFVCSMFLKIARQYSRNEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY R + FP+
Sbjct: 624 DLY-----RFMDLFPE 634
>gi|115532784|ref|NP_001040912.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
gi|82465144|emb|CAJ43433.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
Length = 719
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 226/389 (58%), Gaps = 13/389 (3%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 273 EVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYY 332
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL + + S+SNI+ GDCIV FS+ +I+ K +E G +++YG LPP T+
Sbjct: 333 ERKSPLAIADKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTK 391
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 392 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 447
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 448 RAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASF 507
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ D +S
Sbjct: 508 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAV 567
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A +S G E PK L E LE +++LD Y+WLS R +
Sbjct: 568 FVKMARRFS-TGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPDM 626
Query: 366 FPD----RELAASQKAICSMLIEEFLERL 390
PD RE + ++ +E F+ L
Sbjct: 627 LPDEPRVREASKHLDSMIQEGVESFMSLL 655
>gi|268536316|ref|XP_002633293.1| Hypothetical protein CBG06022 [Caenorhabditis briggsae]
Length = 721
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 224/383 (58%), Gaps = 9/383 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ VIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 275 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYY 334
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 335 DRKSPLTIADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTK 393
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 394 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 449
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 450 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASF 509
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ +D ++
Sbjct: 510 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAV 569
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A ++ G E PK + L E LE ++VLD Y+WLS R +
Sbjct: 570 FVKMARRFA-TGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEVLDQYMWLSMRFPDM 628
Query: 366 FPDRELAASQKAICSMLIEEFLE 388
PD I +I++ +E
Sbjct: 629 LPDEPRVRDASKILDKMIQDGVE 651
>gi|269849717|sp|Q61SU7.3|SUV3_CAEBR RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
Length = 721
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 224/383 (58%), Gaps = 9/383 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ VIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 273 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYY 332
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 333 DRKSPLTIADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTK 391
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 392 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 447
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 448 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASF 507
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ +D ++
Sbjct: 508 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAV 567
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A ++ G E PK + L E LE ++VLD Y+WLS R +
Sbjct: 568 FVKMARRFA-TGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEVLDQYMWLSMRFPDM 626
Query: 366 FPDRELAASQKAICSMLIEEFLE 388
PD I +I++ +E
Sbjct: 627 LPDEPRVRDASKILDKMIQDGVE 649
>gi|336368066|gb|EGN96410.1| hypothetical protein SERLA73DRAFT_186151 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380797|gb|EGO21950.1| hypothetical protein SERLADRAFT_475024 [Serpula lacrymans var.
lacrymans S7.9]
Length = 584
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 229/406 (56%), Gaps = 21/406 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
++ D AV+DEIQM+ RG ++T A+LG+ A ELHLCG+ AVP+I+++L+ TGD++ V
Sbjct: 124 AELDVAVVDEIQMIADTDRGAAWTHAVLGLPARELHLCGEETAVPIIEELLKDTGDELIV 183
Query: 66 QSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ YERL+PLV L G + +Q GDC+VTFSR I+ LK+ +E C++ YG LP
Sbjct: 184 KRYERLTPLVVQEESLEGDLNRVQKGDCVVTFSRSNIFALKQKVERATGLRCAVAYGRLP 243
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PE R+ QA FND +S +DV++ SDAIGMGLNL I RI+F ++KFDG R L+ ++K
Sbjct: 244 PEIRSEQAALFNDPNSGYDVMIGSDAIGMGLNLKIKRIVFEALRKFDGDRERMLSTSQIK 303
Query: 185 QIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR-L 242
QIAGRAGRYG P G VT L+++DLP L +L P+ L A L + S+ L
Sbjct: 304 QIAGRAGRYGLHGEPGGFVTTLNADDLPALRSALSMPADPLTMARLVIKSSWLDSVSQVL 363
Query: 243 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDM 300
PD+SL I E +K+ + + + ++A +D L +K L+ +P+
Sbjct: 364 PPDASLLTIFEVPGYVSKVRQPFQATTQHRLDEMAKFVDTFANDLTFEDKLLYMSAPISW 423
Query: 301 NDDISSQGLTQFATNYSKK----------------GIVQLREIFTPGTLQVPKTQAALRE 344
+D + L +F Y + + ++ E+ + G L+ + L
Sbjct: 424 SDPAFLEVLKRFVRMYQSQIRVDIYTALRSAPFLPMLTEIEELMSTGQLRFSPSPKTLPT 483
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
LE++HKVL LY+WL R ++ R+ K +E LE+L
Sbjct: 484 LETLHKVLVLYMWLGNRNGMAYYQRDEVYDLKVRTEHALEWCLEKL 529
>gi|225558448|gb|EEH06732.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus G186AR]
Length = 714
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 164/417 (39%), Positives = 235/417 (56%), Gaps = 34/417 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D + VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 233 MVPLGQDVEVGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 292
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 293 DKLEIHHYERLNPLKAMNRSLKGNLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIV 352
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 353 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLS 412
Query: 180 VPEVKQIAGRAGRY----------GSKFP---------VGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY GS+ VG VT L+ DLP + K+L E
Sbjct: 413 VSQVKQIGGRAGRYRSATDSRNVKGSRVADSAKNAETNVGFVTSLEDVDLPYIRKALNTE 472
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L SAGL P +I +S P ++ + + L N A++ N+F +C+ + A
Sbjct: 473 PEPIL-SAGLLPPDYIIKGFSEHFPANTPFAYILQRLHNIAQVDPNFFLNDCQSHAEAAE 531
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL---- 333
ID + L + +K +F +P M D S +F ++ L EI G L
Sbjct: 532 AIDSVKGLSMDDKLVFLSAPTHMRDPQMSTIFKEFVRCVAENRSGDLLEI---GDLPIDI 588
Query: 334 ---QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V ++ L LE++H+ L LY+WLS+R F +R LA KA+ + ++ L
Sbjct: 589 LDKPVSGDKSYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKALTEIKMDRAL 645
>gi|212533311|ref|XP_002146812.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
gi|210072176|gb|EEA26265.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
Length = 746
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/408 (38%), Positives = 232/408 (56%), Gaps = 24/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + DYD VIDEIQM+ RG+++TRA LG A ELHLCG+ AVPLI+++ + G
Sbjct: 259 MVSIYRDYDVGVIDEIQMIADPDRGWAWTRAFLGSRAKELHLCGEERAVPLIKELATLMG 318
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++++ Y+RL+PL L G ++ GD IVTFSR I+ LK AIE +IV
Sbjct: 319 DNLEIHHYQRLNPLRAETKSLNGDLRKLRKGDAIVTFSRINIHALKNAIEKTTGKRAAIV 378
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA FND +++D LVASDAIGMGLNL R+IF T+ K L ++
Sbjct: 379 YGGLPAEIRTQQANLFNDPDNDYDYLVASDAIGMGLNLKCKRVIFQTLVKGGKGGLSRIS 438
Query: 180 VPEVKQIAGRAGRY-----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
+PE+KQI GRAGRY + VG VT L+ DLP + ++L P L++AG
Sbjct: 439 IPEIKQIGGRAGRYRAANETGKRGDSEEENVGLVTSLEDVDLPFIQQALEFDPPPLKAAG 498
Query: 229 LFPNFDLIY-MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LR 286
+ ++Y + S PD SL ++ +K+ +F N L+ A+ +D+ +
Sbjct: 499 IISTDAMLYRVASYFPPDVSLKFLINRVCSISKVHPLFFMCNARNQLEAASFLDRCDRIS 558
Query: 287 LHEKYLFCISPVDMNDD---ISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT--QAA 341
+ ++ +F SP+ + D ++G + N S ++ + E+ L+VP + +
Sbjct: 559 IEDQLVFIASPLSVRDQALMTCARGYIRCVANNSSGRLLDIPELNLE-ILEVPVSGQKDY 617
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELES+HK L LY+WLS+R+ F DR LA+ K ++EE + R
Sbjct: 618 LNELESLHKALILYLWLSYRMGGIFTDRTLASHVKE----MVEERMMR 661
>gi|322704688|gb|EFY96280.1| ATP-dependent RNA helicase SUV3 [Metarhizium anisopliae ARSEF 23]
Length = 645
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 243/438 (55%), Gaps = 25/438 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + +D AVIDEIQM+ RG ++T A+LG+ A E+HLCG+ VPL+Q + G
Sbjct: 161 MVPLNTKFDVAVIDEIQMIADPERGNAWTTAVLGVQAKEVHLCGEDRTVPLLQALCASIG 220
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V YERLSPL ++ + G +SN+Q GD IV FSR +++ LK+ +E+ C+I+
Sbjct: 221 DKCVVHRYERLSPLKTMDSAIKGDYSNLQKGDAIVAFSRLSLHVLKRNVETATGRRCAII 280
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND ++++D +VASDAIGMGLNL I R++ ++ KFDG + R LT
Sbjct: 281 YGSLPPEVRVQQAALFNDPNNDYDFVVASDAIGMGLNLEIRRVVLESITKFDGNQNRLLT 340
Query: 180 VPEVKQIAGRAGRY-------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 226
PE+KQI GRAGRY K +G VT +D DL + ++ + +E
Sbjct: 341 YPEIKQIGGRAGRYRTAQSAVGVNAEEAEKEKIGLVTTMDQADLRNVERAFQKKVNDIEY 400
Query: 227 AGLFPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
A + P ++ + S PD+ L IL A + Y +VL++A +I LPL
Sbjct: 401 ASIQPPAGIVERFASYFPPDTPLSFILMRIKAAATVGPRYRLNISSDVLEIADIIQDLPL 460
Query: 286 RLHEKYLFCISPVDMNDDISS---QGLTQFATNYSKKGIVQLREI---FTPGTLQ--VPK 337
++++ FC PV + + + + L + N S ++ ++EI F ++
Sbjct: 461 TIYDRLTFCYLPVALRAEGAVDVLRALARVVANNSAGDLLSIKEIPLEFLEVKMEDYSGG 520
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRV 397
+Q L +LE++H ++ Y+WLS+R F + LA + + + L+RL + + ++
Sbjct: 521 SQEYLSKLEALHVAINQYLWLSYRYAGMFASQALAFHVRHLVEEKLISTLDRLDFTEEQL 580
Query: 398 --KKVTPRPKLNSAVVSR 413
K+ R + S +SR
Sbjct: 581 EHKRKNKRRQARSRDISR 598
>gi|403417869|emb|CCM04569.1| predicted protein [Fibroporia radiculosa]
Length = 673
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 223/394 (56%), Gaps = 22/394 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V ++YD AV+DEIQML RG +++ A+LGI A ELHLCG+ AVPL++ +L+ TG
Sbjct: 210 MVSVNAEYDVAVVDEIQMLADPDRGGAWSNAVLGISARELHLCGEETAVPLVEAMLRDTG 269
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSN-IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V Y RL+PL + L + N +Q GDC+V FSR I+ KK IE C++
Sbjct: 270 DELIVNRYRRLTPLQAADEGLKNDLNLVQKGDCVVCFSRTKIFTYKKRIEEATGMRCAVA 329
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R+ QA FND S +D+LVASDA+GMGLNL I RIIF T++K+DG L L+
Sbjct: 330 YGRLPPEIRSEQAALFNDPDSGYDILVASDAVGMGLNLKIKRIIFDTVRKYDGNRLVLLS 389
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP-SPMLESAGLFPNFDL 235
++KQIAGRAGRY G G VT + DLP + ++L P P+ + + +
Sbjct: 390 TSQIKQIAGRAGRYGLHGKDEAGGIVTAMQDADLPDIRRALAAPMQPLRYARVQLLSQSI 449
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR--LHEKYLF 293
Y+ + L P SL ++ + AKL +Y + ++ ++ID + +E+ L
Sbjct: 450 RYVMNTLPPGVSLQIAVDVYHYVAKLHPSYEIPDTRDLENRISLIDPIGKNNSFNERMLL 509
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL--QVPKTQAALRE------- 344
++PV D ++ L Y+ V LR+ F + Q ALRE
Sbjct: 510 HMAPVPQRDPLAQDVLRCIVRTYNSSMRVSLRKAFQEAGVWDQYQDILTALRESKIQGDK 569
Query: 345 ------LESIHKVLDLYVWLSFRLEESFPDRELA 372
LE++HKV+ +Y+WLS+R +FPD+E A
Sbjct: 570 SVMLGVLETVHKVIVMYLWLSYRQGVAFPDQEDA 603
>gi|340376109|ref|XP_003386576.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Amphimedon queenslandica]
Length = 791
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 231/398 (58%), Gaps = 15/398 (3%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
++D A+IDE QM+ RG ++TRA+LG+ A E+HLCG+ + + +I+ I + GD V+V+
Sbjct: 351 EFDVAIIDEAQMVRDTERGGAWTRAILGVPAKEIHLCGEESVISIIRSIAESVGDTVEVK 410
Query: 67 SYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL+PL+PL L G++ I+ GDC++ FSR ++ +K IE C+IVYG LP
Sbjct: 411 RYERLTPLIPLKRSLIGNYYFIRPGDCVIVFSRRLVFEVKDHIERATGRRCAIVYGGLPS 470
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
R QA FN +S FD+LVA+DAIGMGLNL+I RI+F ++ K L +L+ ++KQ
Sbjct: 471 VNRREQAELFNSPTSGFDILVATDAIGMGLNLHIRRILFHSVSKVARGNLENLSSSQLKQ 530
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
I+GRAGRYGS F VG VT + D+P ++ + ++ AGL P + + ++S+ P+
Sbjct: 531 ISGRAGRYGS-FNVGIVTTFFNRDMPYFQEAFKKKIADIDKAGLTPTLEQLQLFSKSLPN 589
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLK----VATVIDQLPLRLHEKYLFCISPVDMN 301
L+ +L F AKL YF CE+ ++ ++ V+ L L + FC+ PV++N
Sbjct: 590 LKLHELLSVFSMAAKLDGRYFL--CEDKMQEWRAISEVLSVYNLDLKDAITFCLCPVNLN 647
Query: 302 DDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
+ + + +A S+K V R + P + P+ + E H+V+D Y+W
Sbjct: 648 VPLLRKMFSIYAAQVSEKKPVTYEFVKRALKWP--FREPQNSSDFFIFEKAHEVMDTYLW 705
Query: 358 LSFRLEESFPDRE-LAASQKAICSMLIEEFLERLGWQK 394
L R E FP E ++ QK I +++ +R +++
Sbjct: 706 LGQRFPEYFPHSEKISLLQKDIENIIGSSLRKRRSYRR 743
>gi|378726355|gb|EHY52814.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 765
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 227/403 (56%), Gaps = 25/403 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M DV + + AVIDE+QM+ + RG+++TRA LG A E+HLCG+ +PLI+++ TG
Sbjct: 283 MVDVTTPVEVAVIDEVQMMASEDRGWAWTRAFLGANAKEVHLCGEARVLPLIRELTASTG 342
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V Y+RL+PL + LG + N++ GDCIVTFS +++ +KK IE C+IV
Sbjct: 343 DSLHVHEYKRLNPLKVMAKSLGGNLKNLRKGDCIVTFSVFSLHAMKKQIELDTGRRCAIV 402
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +++D LVASDAIGMGLNL++ RIIF KF+G LT
Sbjct: 403 YGSLPPETRAQQAALFNDPDNDYDYLVASDAIGMGLNLSVKRIIFHGTLKFNGSYTEQLT 462
Query: 180 VPEVKQIAGRAGRYGSKFP----------------VGEVTCLDSEDLPLLHKSLLEPSPM 223
VP++KQI GRAGRY S VG VT L+ EDLP++ ++ P
Sbjct: 463 VPQIKQIGGRAGRYRSSHQAMNNSSNKSDTATEANVGLVTTLNDEDLPIVRDAMNAEDPP 522
Query: 224 LESAGLFPNFDLIY-MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 282
+ AGL P D + M +RL IL+ +A + + + + ++A +I+
Sbjct: 523 IRYAGLLPPGDFLEDMATRLPKGIPFEYILQRLRRSASIHRRFKLCSIRDQSRIARIIEP 582
Query: 283 L-PLRLHEKYLFCISP---VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT 338
+ L ++ + +P ++ + L + + +V + EI L+ P +
Sbjct: 583 VRGLTTAQRIVLTAAPGHSASSEVTLAMKALARVIAEQRQVTVVDVPEINLE-ILEKPIS 641
Query: 339 --QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAIC 379
+ L+ LE +HKVL L++WLS+R +F DR++A K +
Sbjct: 642 GDREYLQSLEDLHKVLILFLWLSYRFIGTFKDRDMATYAKEMV 684
>gi|240274878|gb|EER38393.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H143]
Length = 730
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 234/417 (56%), Gaps = 34/417 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D + VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 249 MVPLGQDVEVGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 308
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 309 DKLEIHHYERLNPLKAMNRSLKGNLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIV 368
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 369 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLS 428
Query: 180 VPEVKQIAGRAGRYGS-------------------KFPVGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY S + VG VT L+ DLP + K+L E
Sbjct: 429 VSQVKQIGGRAGRYRSATDSRNVKGFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTE 488
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L SAGL P +I +S P ++ + + L N A++ ++F +C+ + A
Sbjct: 489 PEPIL-SAGLLPPDYIIKGFSEHFPANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAE 547
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL---- 333
ID + L + +K +F +P M D S +F ++ L EI G L
Sbjct: 548 AIDSVKGLSMDDKLVFLSAPTHMRDPQMSTIFKEFVRCVAENRSGDLLEI---GDLPIDI 604
Query: 334 ---QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V ++ L LE++H+ L LY+WLS+R F +R LA KA+ + ++ L
Sbjct: 605 LDKPVSGDKSYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKALTEIKMDRAL 661
>gi|430811577|emb|CCJ30963.1| unnamed protein product [Pneumocystis jirovecii]
Length = 569
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 152/413 (36%), Positives = 235/413 (56%), Gaps = 24/413 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ D VIDE+QM+ RG+++T+ LLG+ A+E+HLCG+ ++V LI +I + G
Sbjct: 155 MVNLDKLMDIIVIDEVQMIADPHRGWAWTQVLLGVQASEIHLCGEESSVELILKIAKSMG 214
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ VK+ Y+RL+PL PL L G + +++GDCIVTFSR I+ LKK IE + C++
Sbjct: 215 EKVKIYHYKRLNPLEPLKQSLYGDLTKVESGDCIVTFSRRDIFSLKKKIEEKTGQRCAVA 274
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPETR QA FND ++++ VLVASDAIGMGLNLNI RIIF +KK++G++ +
Sbjct: 275 YGGLPPETRNEQARLFNDPNNDYHVLVASDAIGMGLNLNIRRIIFERLKKWNGIKHLPIP 334
Query: 180 VPEVKQIAGRAGRYG---------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF 230
V ++KQIAGRAGRY S G VT L +D+ LH +L +P ML+ A LF
Sbjct: 335 VSQIKQIAGRAGRYKFIPTQNTSESSAAKGYVTSLQQKDIKSLHIALSQPIQMLKKASLF 394
Query: 231 PNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLH 288
P + + S P +SL I++ + +K + Y ++ + + +++Q+ L +
Sbjct: 395 PPLHIQESFASFFQPGTSLSLIIKRLKQLSKTTGFYIISDTTQQQNILELLEQINNLTVS 454
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYS---KKGIVQLREI-FTPGTLQVPKTQAALRE 344
E+ + +PV++ D FAT K I+++ E+ + L
Sbjct: 455 ERLILSAAPVNLKDSGVKSAFLAFATIIGLGKPKNILEIPEVDLECLDFEFDLELKQLER 514
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQ----KAICSMLIEEFLERLGWQ 393
LE++HK L L++WLS R FP L+ + K C I + L ++ ++
Sbjct: 515 LETLHKTLLLFLWLSTR----FPSILLSGPECQDIKKECEHYINKNLSKINYK 563
>gi|425772670|gb|EKV11066.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum Pd1]
Length = 779
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/410 (38%), Positives = 232/410 (56%), Gaps = 30/410 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +YD VIDEIQM+ +RG+++TRA LG ELHLCG+ AVPLI+++ +TG
Sbjct: 266 MVSLGQEYDVGVIDEIQMIANSSRGWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTG 325
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+++V YERL+ L + L G+ ++++ GDCIV FSR I+ +K IE +IV
Sbjct: 326 DNLEVHRYERLNALEVMPHSLKGNLNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIV 385
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA FND +++D LVASDAIGMGLNL+ R+IF T+ K L+ LT
Sbjct: 386 YGGLPAEIRTQQANLFNDPDNDYDFLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLT 445
Query: 180 VPEVKQIAGRAGRY---------GSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGL 229
VPE+KQI GRAGRY + VG ++CL+ DLP + +++ LEP P L +AG+
Sbjct: 446 VPEIKQIGGRAGRYRPANATESTNEEPNVGLISCLEEVDLPYIQQAMKLEPPP-LSAAGI 504
Query: 230 FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRL 287
FP + ++ P + +++ LE AK++ +F + L+ A +ID + L
Sbjct: 505 FPPESVFRKFAAYFPPGVPFEYLIKRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPF 564
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKK--------GIVQLREIFTPGTLQVPKTQ 339
++ F +SP+D S A ++ + L I P V +
Sbjct: 565 EDQLKFMVSPMDRKSSGSRDVTGAMADCVAEHLEGRLLDIAYLNLEVIEQP----VSGSN 620
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L +LES+H+ + LY+WLSFR F DR LA+ K L+EE + R
Sbjct: 621 DYLHDLESLHRAVILYLWLSFRFGGVFTDRTLASHVKE----LVEERMVR 666
>gi|425773436|gb|EKV11789.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum PHI26]
Length = 779
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/410 (38%), Positives = 232/410 (56%), Gaps = 30/410 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +YD VIDEIQM+ +RG+++TRA LG ELHLCG+ AVPLI+++ +TG
Sbjct: 266 MVSLGQEYDVGVIDEIQMIANSSRGWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTG 325
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+++V YERL+ L + L G+ ++++ GDCIV FSR I+ +K IE +IV
Sbjct: 326 DNLEVHRYERLNALEVMPHSLKGNLNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIV 385
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA FND +++D LVASDAIGMGLNL+ R+IF T+ K L+ LT
Sbjct: 386 YGGLPAEIRTQQANLFNDPDNDYDFLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLT 445
Query: 180 VPEVKQIAGRAGRY---------GSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGL 229
VPE+KQI GRAGRY + VG ++CL+ DLP + +++ LEP P L +AG+
Sbjct: 446 VPEIKQIGGRAGRYRPANATESTNEEPNVGLISCLEEVDLPYIQQAMKLEPPP-LSAAGI 504
Query: 230 FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRL 287
FP + ++ P + +++ LE AK++ +F + L+ A +ID + L
Sbjct: 505 FPPESVFRKFAAYFPPGVPFEYLIKRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPF 564
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKK--------GIVQLREIFTPGTLQVPKTQ 339
++ F +SP+D S A ++ + L I P V +
Sbjct: 565 EDQLKFMVSPMDRKSSGSRDVTGAMADCVAEHLEGRLLDIAYLNLEVIEQP----VSGSN 620
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L +LES+H+ + LY+WLSFR F DR LA+ K L+EE + R
Sbjct: 621 DYLHDLESLHRAVILYLWLSFRFGGVFTDRTLASHVKE----LVEERMVR 666
>gi|325094231|gb|EGC47541.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H88]
Length = 732
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 234/417 (56%), Gaps = 34/417 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D + VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 251 MVPLGQDVEVGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 310
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 311 DKLEIHHYERLNPLKAMNRSLKGNLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIV 370
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 371 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLS 430
Query: 180 VPEVKQIAGRAGRYGS-------------------KFPVGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY S + VG VT L+ DLP + K+L E
Sbjct: 431 VSQVKQIGGRAGRYRSATDSRNVKGFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTE 490
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L SAGL P +I +S P ++ + + L N A++ ++F +C+ + A
Sbjct: 491 PEPIL-SAGLLPPDYIIKGFSEHFPANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAE 549
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL---- 333
ID + L + +K +F +P M D S +F ++ L EI G L
Sbjct: 550 AIDSVKGLSMDDKLVFLSAPTHMRDPQMSTIFKEFVRCVAENRSGDLLEI---GDLPIDI 606
Query: 334 ---QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V ++ L LE++H+ L LY+WLS+R F +R LA KA+ + ++ L
Sbjct: 607 LDKPVSGDKSYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKALTEIKMDRAL 663
>gi|70997649|ref|XP_753564.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus
fumigatus Af293]
gi|66851200|gb|EAL91526.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus Af293]
Length = 765
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 230/408 (56%), Gaps = 23/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQML RG+++TRA+LG A ELHLCG+ AVPL++++ +TG
Sbjct: 259 MVNLGQPYDVGVIDEIQMLADPKRGWAWTRAVLGARAKELHLCGETRAVPLVRELAALTG 318
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ Y+RL+PL ++ + G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 319 DRLEIHRYKRLNPLKVMDQSIRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGRRAAIV 378
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA FND +++D LVASDAIGMGLNL+I RIIF T+ K L L+
Sbjct: 379 YGSLPAEIRTQQAKLFNDPDNDYDFLVASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLS 438
Query: 180 VPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
VPE+KQI GRAGRY S +G VTCL+ DLP + +++ P L +A
Sbjct: 439 VPEIKQIGGRAGRYRPAVQQDKKDNNDSDSNIGLVTCLEEVDLPYIREAMETEPPPLTAA 498
Query: 228 GLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ-LPL 285
G+FP + +S P D +++ LE +++ +F + L+ A +ID + L
Sbjct: 499 GIFPPDPVFQKFSAYFPRDVPFEYLIKRLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGL 558
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQAA 341
+ ++ F +P+ D S FA ++ +L +I L+ P +
Sbjct: 559 PIEDQVTFMAAPMYTRDRKSRSVACAFAECVAEHSGGRLLDIPDLNLEILEEPVSGNKDY 618
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE +H+ + LY WLS+R F DR LAA K ++EE + R
Sbjct: 619 LHELEGLHRSVILYSWLSYRFGGIFTDRTLAAHVKE----MVEERMVR 662
>gi|159126705|gb|EDP51821.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus A1163]
Length = 765
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 230/408 (56%), Gaps = 23/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQML RG+++TRA+LG A ELHLCG+ AVPL++++ +TG
Sbjct: 259 MVNLGQPYDVGVIDEIQMLADPKRGWAWTRAVLGARAKELHLCGETRAVPLVRELAALTG 318
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ Y+RL+PL ++ + G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 319 DRLEIHRYKRLNPLKVMDQSIRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGRRAAIV 378
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA FND +++D LVASDAIGMGLNL+I RIIF T+ K L L+
Sbjct: 379 YGSLPAEIRTQQAKLFNDPDNDYDFLVASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLS 438
Query: 180 VPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
VPE+KQI GRAGRY S +G VTCL+ DLP + +++ P L +A
Sbjct: 439 VPEIKQIGGRAGRYRPAAQQDKKDNNDSDSNIGLVTCLEEVDLPYIREAMETEPPPLTAA 498
Query: 228 GLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ-LPL 285
G+FP + +S P D +++ LE +++ +F + L+ A +ID + L
Sbjct: 499 GIFPPDPVFQKFSAYFPRDVPFEYLIKRLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGL 558
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQAA 341
+ ++ F +P+ D S FA ++ +L +I L+ P +
Sbjct: 559 PIEDQVTFMAAPMYTRDRKSRSVACAFAECVAEHSGGRLLDIPDLNLEILEEPVSGNKDY 618
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE +H+ + LY WLS+R F DR LAA K ++EE + R
Sbjct: 619 LHELEGLHRSVILYSWLSYRFGGIFTDRTLAAHVKE----MVEERMVR 662
>gi|242777745|ref|XP_002479096.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722715|gb|EED22133.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
Length = 746
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 225/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + DYD VIDEIQM+ RG+++TRA LG A ELH+CG+ AVPLI+++ + G
Sbjct: 258 MVSIYKDYDVGVIDEIQMIADPDRGWAWTRAFLGARAKELHVCGEERAVPLIKELTTLMG 317
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++++ Y+RL+PL L G ++ GDCIVTFSR I+ LK IE +IV
Sbjct: 318 DNLEIHRYQRLNPLQAEEKSLNGDLRKLRKGDCIVTFSRINIHALKNEIEKSTGKRAAIV 377
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA FND + +D LVASDAIGMGLNL RIIF T+ K L ++
Sbjct: 378 YGGLPAEIRTQQANLFNDPHNNYDFLVASDAIGMGLNLKCKRIIFQTLVKGGKNGLSRIS 437
Query: 180 VPEVKQIAGRAGRY----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
+PE+KQI GRAGRY + VG VT L+ DLP + ++L P L +AG+
Sbjct: 438 IPEIKQIGGRAGRYRAANETDPRDSEEENVGLVTSLEDVDLPFIKQALEFDPPPLTAAGV 497
Query: 230 FPNFDLIY-MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRL 287
P + Y + S PD S ++ +++ +F L+ A ++D+ + +
Sbjct: 498 IPTDAMFYRVASYFPPDVSFKFLVNRVCSVSRVHPLFFMCKARSQLEAAEILDRCDRMSI 557
Query: 288 HEKYLFCISPVDMNDD---ISSQGLTQFATNYSKKGIVQLREIFTPGTLQVP--KTQAAL 342
++ +F SP+ D S++G Q + ++ + E+ L+ P ++ L
Sbjct: 558 EDQLVFMASPLGKRDPALLASAKGFIQCVARNTSGRLLDIPELNLE-ILEAPVSGSRDYL 616
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
ELES+HK L LY+WLS+R+ F DR LA K ++EE + R
Sbjct: 617 NELESLHKSLILYLWLSYRMGGIFTDRTLATHVKG----MVEERMMR 659
>gi|46132986|ref|XP_389198.1| hypothetical protein FG09022.1 [Gibberella zeae PH-1]
Length = 752
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/416 (36%), Positives = 228/416 (54%), Gaps = 24/416 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V +D AVIDEIQM+ + RG + ALLG+ A E+HLCG+ V LI+ I G
Sbjct: 279 MVPVNEQFDVAVIDEIQMIADEDRGQGWATALLGVQAKEVHLCGEERTVKLIESICASIG 338
Query: 61 DDVKVQSYERLSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ V YERLSPL P+ N +G + ++ GD +V FSR ++ LK IE + C+I+
Sbjct: 339 DECIVHRYERLSPLEPMDNALMGDYGKLEKGDAVVAFSRMNLHALKLTIEKKTGRRCAII 398
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND +++D +VASDAIGMGLNL I R++ T K+DG R L+
Sbjct: 399 YGSLPPEVRVQQAALFNDPDNDYDFIVASDAIGMGLNLEIRRVVLETCAKYDGSHNRLLS 458
Query: 180 VPEVKQIAGRAGRYGSK--------------FPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
PE+KQI GRAGRY + VG VT +D +DL ++HK+ P +E
Sbjct: 459 YPELKQIGGRAGRYKTARNATEGTESEVTEIRKVGYVTTMDRQDLKVVHKAFEADVPDIE 518
Query: 226 SAGLFPNFDLIYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 284
A + P ++ +S P + L IL E A +S+ + E L++A +I +P
Sbjct: 519 YAYVTPPASVVERFSTYFPSQTPLSFILMRIKELASVSKLFRLHISTEKLEIADMIQDIP 578
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG---IVQLREIFTPGTLQVPKTQAA 341
L ++++ F P+ + + L A+ +K G ++ ++EI KT
Sbjct: 579 LTIYDRLTFTNLPIAARAENAVPVLRALASVVAKNGSGDLLSIKEIPLENLDIDLKTFRG 638
Query: 342 -----LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
L +LES+H+ ++ Y+WLS+R F D+ LA +++ + E LE+L +
Sbjct: 639 KPIEYLHKLESLHQAINQYIWLSYRFSGMFRDQALAFHVRSLVEEKLIETLEKLDF 694
>gi|195497028|ref|XP_002095927.1| GE25405 [Drosophila yakuba]
gi|194182028|gb|EDW95639.1| GE25405 [Drosophila yakuba]
Length = 758
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 223/375 (59%), Gaps = 11/375 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+ +I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDSQRGWAWTRAFLGLIADEVHVCGEPGALGLLLKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y RL+ L N L S N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRQYNRLTELTVENTALVSLDNVVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
G LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSINARGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFD 234
++V QIAGRAGR+ +++ G VT +EDL +L + L + P P+++ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKTEDLQILQRILAQTPEPLMQ-AGLHPTAD 502
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLF 293
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+F
Sbjct: 503 QIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVF 562
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKV 351
C SP++ + A YS+ + I ++PKT L LE++ V
Sbjct: 563 CCSPINRKMPFVCSMFLKVARQYSRSEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDV 622
Query: 352 LDLYVWLSFRLEESF 366
+DLY ++ E ++
Sbjct: 623 MDLYRFMDLFPEAAY 637
>gi|388578789|gb|EIM19125.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 591
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 238/444 (53%), Gaps = 44/444 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D VIDEIQ++ +RG ++T A+LG+ A ELH+CG+ V L+++I + TG
Sbjct: 143 MVPLEHEIDVGVIDEIQLIADDSRGPAWTAAVLGMRAKELHICGEETVVELLERIAKETG 202
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D++ V Y+RL+ L + PL + N++ GDC+VTFSR I+ LK+ IE C++ Y
Sbjct: 203 DEIIVNRYKRLTEL-RIGKPLSTLKNVRKGDCVVTFSRSGIWALKRKIEDATGLRCAVAY 261
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPETR QA FND S +DV+VASDAIGMGLNL I R++F T+ K++GV+ L++
Sbjct: 262 GGLPPETRAEQAKLFNDKDSGYDVMVASDAIGMGLNLKIRRVVFETVHKWNGVKEVPLSI 321
Query: 181 PEVKQIAGRAGRYG-----------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPM 223
++KQIAGRAGRYG G T L+ DL +L +++ P
Sbjct: 322 SQMKQIAGRAGRYGVNEKENIIETNNAKVEDEDDQSGVATTLNPMDLQILERAISAKIPT 381
Query: 224 LESAGLFPNFDLIYMYSRLHPD-SSLYGILEHFLENAKLSENYFFANCEEVLKVATV--- 279
+ A + + D + + L P +SL +++ ++S NYF + + +L++A +
Sbjct: 382 INKAAIGISTDALKDLNNLMPSRASLGDLIKTLTGLLRVSNNYFVTSNQNLLQMAAIANE 441
Query: 280 -IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK------------GIVQLRE 326
+ QLP+ + Y F ++P + D L +F + G+ +L++
Sbjct: 442 PLSQLPI--DDAYRFAMAPCNTRDANVVAALCRFIDAQASGETIEPIKSLEGLGLKELKD 499
Query: 327 ----IFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSML 382
I P + P + L LES+H+ L LY WLSFR + R +A K
Sbjct: 500 VEKVIGNPA-YKKPLSPDTLNSLESLHRSLVLYTWLSFRFTLDYTRRSVAQDLKVRTERC 558
Query: 383 IEEFLERLGW-QKPRVKKVTPRPK 405
IE LE + W K R ++ TP PK
Sbjct: 559 IEYILENVTWISKQRQRRRTP-PK 581
>gi|330800084|ref|XP_003288069.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
gi|325081893|gb|EGC35393.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
Length = 519
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 236/393 (60%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
+A+ + AVIDE Q++ RG +TRA+LGI A E+HLCGD ++ LI++I ++TG
Sbjct: 115 LANTEEMVEVAVIDEFQLISDSDRGLYWTRAILGIPALEIHLCGDGSSKELIRKICEITG 174
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++++YERLSPL P S S +Q GDC+VTFS+ LK+ +ES+GK C+IVY
Sbjct: 175 DSYELRTYERLSPLEIEERP-ASISKLQKGDCLVTFSKKECIELKQQMESKGKR-CAIVY 232
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPP R ++A RFND + + ++L+A+D IGMGLNLNISR+IF++ K+DG + R L
Sbjct: 233 GSLPPIIRLQEAKRFND-TDDAEILIATDCIGMGLNLNISRVIFTSTFKYDGRDFRKLKS 291
Query: 181 PEVKQIAGRAGRYGSKF-PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
PE++QIAGRAGR+ S F G+V+ D L + K+ + AGLFP + + ++
Sbjct: 292 PELRQIAGRAGRFKSDFNSCGKVSAFDRTGLDHIRKAFAAREEENKRAGLFPPAEQLELF 351
Query: 240 SR-LHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
+ +S+ + IL+ F+ ++ + ++YF + L +A +D++ + + +KYLF SP
Sbjct: 352 GENIAKNSTKFSEILKSFVLSSNIDQHYFLCYFDRFLIIAEHLDEIKMSIPDKYLFICSP 411
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
++ + L FA +YS+ + ++ + L LE ++ + D Y+W
Sbjct: 412 FQIHRKKAMFFLKSFAFDYSEGKTIPF-PFNQSHMVEGHTANSTLECLEDLYAISDGYLW 470
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L+ + ESF E +QK I M+ +E E+L
Sbjct: 471 LAHQFPESF--NETNKAQKYI-QMVTKEISEKL 500
>gi|301614881|ref|XP_002936914.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Xenopus (Silurana) tropicalis]
Length = 798
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 220/380 (57%), Gaps = 42/380 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V S Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 329 MCSVTSPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHICGEGAAINLVTELMFTTG 388
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++YERL+PL L+ L S N++ GDCIV F+++ IY + + IE+R C+++Y
Sbjct: 389 EEVEVRNYERLTPLKILDQALESLDNLRPGDCIVCFNKNDIYSVSRQIEARSLE-CAVIY 447
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP ++I RIIF+++ K E+
Sbjct: 448 GSLPP------------------------------GVSIKRIIFNSLVKPSINEKGEKEI 477
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ S F GEVT + +DLPLL + + +P +E+AGL P D
Sbjct: 478 DTISTSQALQIAGRAGRFSSMFKDGEVTTMFRDDLPLLKEIMRKPVTAIETAGLHPTADQ 537
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ VA +I +PL L +Y+FC
Sbjct: 538 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFVADMIQHIPLNLRARYVFCT 597
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ L +FA +S+ + R I P + PKT L LES+H +
Sbjct: 598 APINRKQPFVCTSLLKFARQFSRNEPLTFDWICRHINWP--VASPKTIKDLVHLESVHDI 655
Query: 352 LDLYVWLSFRLEESFPDREL 371
LDLY+WLS+R + FPD L
Sbjct: 656 LDLYLWLSYRFMDMFPDANL 675
>gi|400593909|gb|EJP61799.1| ATP-dependent RNA helicase SUV3 [Beauveria bassiana ARSEF 2860]
Length = 769
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 242/444 (54%), Gaps = 38/444 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQM+G + RG ++T A LG+ A E+H+CG+ V LI+ + GD+ V
Sbjct: 299 FDVAVIDEIQMIGNEERGNAWTTAFLGVQAKEVHVCGEERTVSLIENLCATIGDECIVHR 358
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERLSPL ++ L G +S ++ GD IV FSR +++ LK+ +E C+I+YG+LPPE
Sbjct: 359 YERLSPLKTMSTALEGKYSRLEKGDAIVAFSRLSLHALKRQVEQETGRRCAIIYGTLPPE 418
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +QA FND +++D +VASDAIGMGLNL I R+IF ++ KFDGV+ R L+VPE KQI
Sbjct: 419 VRVQQAALFNDPDNDYDYVVASDAIGMGLNLEIKRVIFESVHKFDGVQHRMLSVPEFKQI 478
Query: 187 AGRAGRYGS------------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
GRAGRY S + VG VT +D +D+ + K+ ++ A
Sbjct: 479 GGRAGRYRSAQAAQVGEGSVADPAPDVEQKVGYVTAMDRQDVRSITKAFQHDVEDIQHAY 538
Query: 229 LFPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRL 287
+ P ++ + S PD+ L IL A +S Y L++A +I LPL +
Sbjct: 539 IQPPPSVVERFASYFPPDTPLSFILTRIKAAANVSPLYRLNISSSALEIADIIQDLPLSI 598
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFA--TNYSKKG-IVQLREIFTPGTLQVPKTQAALRE 344
+++ C P+ ++ + S L A +++ G ++ ++EI L +P Q + +E
Sbjct: 599 YDRQSICHMPISLSSEGSIAALRAMARVIAHNEAGELLSIKEIPLE-VLDLPFMQLSGKE 657
Query: 345 -------LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW----- 392
LES+H L+ Y+WLS+R F +LA + + + + LE+L +
Sbjct: 658 ATEYLYKLESLHMALNGYIWLSYRFIGMFRSIDLAFHVRGLVEAKLIDALEKLNFTDEQL 717
Query: 393 --QKPRVKKVTPRPKLNSAVVSRC 414
Q+ R ++ +L VV++
Sbjct: 718 LSQRQRKRRQAKVAQLRGKVVAKA 741
>gi|121713500|ref|XP_001274361.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
gi|119402514|gb|EAW12935.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
Length = 633
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 235/408 (57%), Gaps = 24/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ ++ VIDEIQML RG+++TRA+LG A+ELHLCG+ VPLI+++ +TG
Sbjct: 159 MVNLGQQFEVGVIDEIQMLADPKRGWAWTRAVLGARASELHLCGETRVVPLIRELAALTG 218
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+ L ++ + G +Q GDCIV FSR I+ LK IE +IV
Sbjct: 219 DKLEIHRYERLNSLKVMDQSIRGDLRKLQKGDCIVVFSRVGIHALKADIEKVTGRRAAIV 278
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND +++D LVASDAIGMGLNL+I RIIF T+ K L L+
Sbjct: 279 YGSLPAEIRTQQASLFNDPDNDYDFLVASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLS 338
Query: 180 VPEVKQIAGRAGRY----------GSKFP-VGEVTCLDSEDLPLLHKSL-LEPSPMLESA 227
VPE+KQIAGRAGRY G P VG VT L+ DLP + ++L +EP P + +A
Sbjct: 339 VPEIKQIAGRAGRYRSAAQQNKDTGDDEPNVGWVTSLEEVDLPYIQQALDIEPPP-ITAA 397
Query: 228 GLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-L 285
G+FP + ++ P D I++ LE +++ +F + L+ A VID + L
Sbjct: 398 GIFPPDPVFQKFAAYFPRDVPFEYIIKRLLEVSRVHPLFFMCDPRSQLENAEVIDSVTGL 457
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQ--VPKTQAA 341
+ ++ F SP+ D+ S + FA ++ +L +I L+ V ++
Sbjct: 458 PIEDQITFMASPMYTRDNSSRNVASAFAECVAEHTGGRLLDIPDLNLEVLENAVSGSKEY 517
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE +H+ + LY WLS+R F DR LA K ++EE + R
Sbjct: 518 LHELEGLHRSVILYSWLSYRFGGVFTDRTLAGHVKK----MVEERMVR 561
>gi|327355966|gb|EGE84823.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 761
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 232/414 (56%), Gaps = 28/414 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA D + VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 280 MAPFGQDVEVGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 339
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 340 DKLEIHHYERLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIV 399
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L LT
Sbjct: 400 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLT 459
Query: 180 VPEVKQIAGRAGRYGS-------------------KFPVGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY S + VG VT L+ DLP + K+L E
Sbjct: 460 VSQVKQIGGRAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTE 519
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L +AGL P ++ +S P + + + L N A++ ++F ++ + + A
Sbjct: 520 PEPIL-AAGLLPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAE 578
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQV 335
ID + L + EK +F +P M D S +F ++ L EI L
Sbjct: 579 AIDSIKGLSMDEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDVLDK 638
Query: 336 PKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
P + + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 639 PVSGDKGYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 692
>gi|115401322|ref|XP_001216249.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190190|gb|EAU31890.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 630
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 228/409 (55%), Gaps = 25/409 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TG
Sbjct: 158 MVNLSHPYDVGVIDEIQMIADSRRGWAWTRAVLGSRAKELHLCGEQRAVPLIRELAALTG 217
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL + L G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 218 DKLEIHRYERLNPLKVADQSLKGDLRNLQKGDCVVAFSRVGIHALKADIEKVTGRRAAIV 277
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND ++++D LVASDAIGMGLNL++ RI+F T+ K L+ L+
Sbjct: 278 YGSLPAEIRTQQASLFNDPNNDYDYLVASDAIGMGLNLSVKRIVFETIVKRVPGGLQRLS 337
Query: 180 VPEVKQIAGRAGRYGSKFP------------VGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
VPE+KQIAGRAGRY S VG VT L+ DLP + +++ P L +A
Sbjct: 338 VPEIKQIAGRAGRYRSAAQHASKKNADENSNVGIVTSLEEVDLPHIRQAMGVEPPPLAAA 397
Query: 228 GLFPNFDLIYMY--SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
G+ P D +Y + P L I++ E ++ +F + L+ A VID +
Sbjct: 398 GIIPP-DPVYQRFAAYFPPGVPLEYIIKRLAEVSQTHPLFFMCDTRPQLENAEVIDTVSG 456
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQA 340
L+ ++ F +P+ D S F ++ +L +I L+ P +
Sbjct: 457 LQFEDQLTFMAAPIQTRDIASRDAAIAFLRCVAEHSGGRLLDIPDLNLEILEQPVSGNKE 516
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE +HK + LY WL +R F DR LAA K L+EE + R
Sbjct: 517 YLHELEILHKSVILYSWLGYRFGGVFTDRTLAAHVKE----LVEERMVR 561
>gi|302896154|ref|XP_003046957.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
gi|256727885|gb|EEU41244.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
Length = 764
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 233/431 (54%), Gaps = 27/431 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V YD AVIDEIQM+ RG +T ALLG+ A E+HLCG+ V LIQ I G
Sbjct: 285 MIPVNEPYDVAVIDEIQMIADPDRGSGWTTALLGVMAKEVHLCGEERTVKLIQSICAAIG 344
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ V YERLSPL ++ + ++ ++ GD IV FSR ++ LK IE C+I+
Sbjct: 345 DECIVHRYERLSPLETMSEAIDEDYNRLEKGDAIVAFSRMNLHALKTTIEKHTGRRCAII 404
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND ++++D +VASDAIGMGLNL I R+I ++ K+DG + R LT
Sbjct: 405 YGSLPPEVRVQQAALFNDPNNDYDFIVASDAIGMGLNLEIRRVILDSVTKYDGNQNRHLT 464
Query: 180 VPEVKQIAGRAGRY---------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
PE+KQI GRAGRY G K VG VT + +DL +H++ +
Sbjct: 465 YPELKQIGGRAGRYRTARQATEADNGADDGRK--VGYVTTMARQDLKNVHRAFRSSVDDI 522
Query: 225 ESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 283
++A + P + +S P D+ L IL E A +S+N+ + L++A I +
Sbjct: 523 DAAYVTPPAAAVERFSTYFPKDTPLSFILMRIRELASVSKNFRLGIAPDKLEIADAIQHI 582
Query: 284 PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG---IVQLREI-FTPGTLQVPKTQ 339
PL ++++ C PV + S L A S+ G ++ ++EI + + +
Sbjct: 583 PLTIYDRLTLCHLPVWQRAENSMDVLRALAKIISENGRGDLLSIKEIPLESLDIDLKNFK 642
Query: 340 AA----LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKP 395
L +LES+H ++ YVWLS+R F D+ LA +++ + + LERL + +
Sbjct: 643 GTPIDYLHKLESLHVAINQYVWLSYRFSGMFRDQALAFHVRSLVEQKLVDTLERLDFTQS 702
Query: 396 RVKKVTPRPKL 406
++ + +L
Sbjct: 703 DLQSIRQNKRL 713
>gi|326474037|gb|EGD98046.1| mitochondrial ATP-dependent RNA helicase [Trichophyton tonsurans
CBS 112818]
Length = 772
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 231/407 (56%), Gaps = 20/407 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+++ + G
Sbjct: 281 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMG 340
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 341 DTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIV 400
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L+
Sbjct: 401 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLS 460
Query: 180 VPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
+ EVKQI GRAGRY S K VG VTCLD DLP + ++L + L++A
Sbjct: 461 ISEVKQIGGRAGRYRSAAQSSSSTNANEKENVGLVTCLDEADLPYIRAAMLAEAEPLDAA 520
Query: 228 GLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-L 285
G+ P +I YS + P + +G + LE ++ +F ++ ++D + L
Sbjct: 521 GILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGL 580
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QA 340
+ +K +F +P+ D + ++ + FA ++ +L +I L P + +
Sbjct: 581 NVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDRPVSGDDKE 640
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LR LE++H+ L LY+WL +R F DR LA K + + ++ L
Sbjct: 641 YLRSLEALHRSLILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 687
>gi|67537106|ref|XP_662327.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
gi|40741575|gb|EAA60765.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
Length = 785
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 234/410 (57%), Gaps = 26/410 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ Y+ VIDEIQM+ RG+++TRALLG A ELHLCG+ VPLI+Q+ + G
Sbjct: 214 MVNLGQTYEVGVIDEIQMIADPRRGWAWTRALLGAKATELHLCGETRVVPLIRQLAALAG 273
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL+PL +N L G +++Q GDCIV+FSR I+ LK IE + +I+
Sbjct: 274 DKLVIHRYERLNPLKAMNKSLKGDLTSLQKGDCIVSFSRVGIHALKADIERKTGRRAAII 333
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA+ FND ++++D LVASDAIGMGLNL+ RIIF T+ K L+ LT
Sbjct: 334 YGGLPAEIRTQQASLFNDPNNDYDFLVASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLT 393
Query: 180 VPEVKQIAGRAGRYGSKFP-------------VGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY S VG VT L+ DLP + ++L P + +
Sbjct: 394 VPEIKQIGGRAGRYRSAAQHGKDHQQDNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISA 453
Query: 227 AGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P + ++ P ++SL +++ E A+++ +F + L+ A +ID +P
Sbjct: 454 AGINPPDSVYEKFAAYFPSNASLAYMVKRLTEIARINNLFFMCDPSPNLENAEIIDAVPG 513
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFAT---NYSKKGIVQLREIFTPGTLQVP--KTQ 339
L ++ F +P++ +++ + F ++ ++ + E+ L+ P +
Sbjct: 514 LHFVDQLTFMAAPMNPREELGRRVAMAFERCVLEHTNGRLLDIEEVNLE-ILEEPVSGNK 572
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ +LE +H+ + LY WLS+R F DR LA K L+EE + R
Sbjct: 573 EYMHKLEGLHRSVILYTWLSYRFGGIFTDRTLAVHVKE----LVEERMVR 618
>gi|259482438|tpe|CBF76922.1| TPA: mitochondrial ATP-dependent RNA helicase Suv3, putative
(AFU_orthologue; AFUA_5G10820) [Aspergillus nidulans
FGSC A4]
Length = 832
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 234/410 (57%), Gaps = 26/410 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ Y+ VIDEIQM+ RG+++TRALLG A ELHLCG+ VPLI+Q+ + G
Sbjct: 261 MVNLGQTYEVGVIDEIQMIADPRRGWAWTRALLGAKATELHLCGETRVVPLIRQLAALAG 320
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL+PL +N L G +++Q GDCIV+FSR I+ LK IE + +I+
Sbjct: 321 DKLVIHRYERLNPLKAMNKSLKGDLTSLQKGDCIVSFSRVGIHALKADIERKTGRRAAII 380
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LP E RT+QA+ FND ++++D LVASDAIGMGLNL+ RIIF T+ K L+ LT
Sbjct: 381 YGGLPAEIRTQQASLFNDPNNDYDFLVASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLT 440
Query: 180 VPEVKQIAGRAGRYGSKFP-------------VGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY S VG VT L+ DLP + ++L P + +
Sbjct: 441 VPEIKQIGGRAGRYRSAAQHGKDHQQDNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISA 500
Query: 227 AGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P + ++ P ++SL +++ E A+++ +F + L+ A +ID +P
Sbjct: 501 AGINPPDSVYEKFAAYFPSNASLAYMVKRLTEIARINNLFFMCDPSPNLENAEIIDAVPG 560
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFAT---NYSKKGIVQLREIFTPGTLQVP--KTQ 339
L ++ F +P++ +++ + F ++ ++ + E+ L+ P +
Sbjct: 561 LHFVDQLTFMAAPMNPREELGRRVAMAFERCVLEHTNGRLLDIEEVNLE-ILEEPVSGNK 619
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ +LE +H+ + LY WLS+R F DR LA K L+EE + R
Sbjct: 620 EYMHKLEGLHRSVILYTWLSYRFGGIFTDRTLAVHVKE----LVEERMVR 665
>gi|408393411|gb|EKJ72675.1| hypothetical protein FPSE_07075 [Fusarium pseudograminearum CS3096]
Length = 752
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 228/415 (54%), Gaps = 26/415 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V +D AVIDEIQM+ + RG + ALLG+ A E+HLCG+ V LI+ I G
Sbjct: 279 MVPVNEQFDVAVIDEIQMIADEDRGQGWATALLGVQAKEVHLCGEERTVKLIESICASIG 338
Query: 61 DDVKVQSYERLSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+ V YERLSPL P+ N +G + ++ GD +V FSR ++ LK IE + C+I+
Sbjct: 339 DECIVHRYERLSPLEPMENALMGDYGKLEKGDAVVAFSRLNLHALKLTIEKKTGRRCAII 398
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA FND +++D +VASDAIGMGLNL I R+I T K+DG R L+
Sbjct: 399 YGSLPPEVRVQQAALFNDPDNDYDFIVASDAIGMGLNLEIRRVILETCAKYDGSHNRLLS 458
Query: 180 VPEVKQIAGRAGRYGSK--------------FPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
PE+KQI GRAGRY + VG VT +D +DL ++ ++ P +E
Sbjct: 459 YPELKQIGGRAGRYKTARNATEGTESEVTEIRKVGYVTTMDRQDLKIVREAFEANVPDIE 518
Query: 226 SAGLFPNFDLIYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 284
A + P ++ +S P + L IL E A +S+ + E L++A +I +P
Sbjct: 519 YAYVTPPASVVERFSTYFPSQTPLSFILMRIKELASVSKLFRLHISTEKLEIADMIQDIP 578
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG---IVQLREI------FTPGTLQV 335
L ++++ F P+ + + L A+ +K G ++ ++EI T +
Sbjct: 579 LTIYDRLTFTNLPIAARAENAVPVLRALASVVAKNGSGDLLSIKEIPLENLDLNMKTFER 638
Query: 336 PKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
T+ L +LES+H+ ++ Y+WLS+R F D+ LA +++ + E LE+L
Sbjct: 639 KPTE-YLHKLESLHQAINQYIWLSYRFSGMFRDQALAFHVRSLVEEKLIETLEKL 692
>gi|440632056|gb|ELR01975.1| hypothetical protein GMDG_05144 [Geomyces destructans 20631-21]
Length = 897
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 237/425 (55%), Gaps = 25/425 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++ + AVIDEIQM+G RG+++T+A LG+ A E+H+CG+ +PLIQ + ++ G
Sbjct: 396 MVPLNTEVEVAVIDEIQMMGDGFRGWAWTQAFLGVRAREIHICGELRTIPLIQNLCKLMG 455
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V YERL+PL + L G ++ GDCI+ FSR AI+ +KK +E C++V
Sbjct: 456 DELTVHRYERLTPLECMGKSLHGKLDKLKKGDCIILFSRVAIHAMKKEVERATGKRCAVV 515
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +E+D LVASDA+GMGLNL I R+IF + KFDG R++
Sbjct: 516 YGSLPPETRAQQAALFNDPDNEYDYLVASDAVGMGLNLAIRRVIFEALSKFDGKSHRNIP 575
Query: 180 VPEVKQIAGRAGRYGSKF--------PVGEV-----------TCLDSEDLPLLHKSLLEP 220
+ E+KQIAGRAGRY + P GEV T LD+ D LL +++
Sbjct: 576 ISEIKQIAGRAGRYKTAAEAMKRKDGPTGEVSRQVGRNVGLATTLDAVDHALLKRAMGTD 635
Query: 221 SPMLESAGLFPNFDLIYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATV 279
L++AG+FP ++ ++ P + L I+ E A L+ + + E L +A +
Sbjct: 636 VEPLKTAGIFPPSTILQKFAAYFPKGTPLSYIILRLNEFATLNPMFTLCDFNEQLLLADM 695
Query: 280 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT- 338
I+ L L ++ +F +P ++ + A + + L EI + +T
Sbjct: 696 IEPFNLTLQDQLVFIAAPANVKRREQRPIIEALAAIIANRSATDLLEIPALNLELLDETL 755
Query: 339 ---QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKP 395
+ L +LE++H+ + LY+WLS+R F + LA K++ I E L + +++
Sbjct: 756 TEGKEYLSKLEALHQGITLYLWLSYRFAGVFRSQALAFHIKSLVEEKINESLANVPFEEN 815
Query: 396 RVKKV 400
R + V
Sbjct: 816 RRRVV 820
>gi|392580456|gb|EIW73583.1| hypothetical protein TREMEDRAFT_12580, partial [Tremella
mesenterica DSM 1558]
Length = 710
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 237/451 (52%), Gaps = 62/451 (13%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQIL-QVTGDDVK 64
S YD V+DEIQM+G RG ++T ++ + A+E+HLCGD V L+++++ GD +
Sbjct: 241 SPYDVVVVDEIQMMGDPQRGSAWTNVVMKLRAHEIHLCGDETTVGLLKRMVASFGGDQLT 300
Query: 65 VQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
V Y+RL+PL + LGS + ++ GDC+VTFSR I+ +++ +ES K C++VYG+L
Sbjct: 301 VHRYDRLTPLTVADKSLGSSYKGVRKGDCVVTFSRSGIFYVRREVESFAKKKCAMVYGAL 360
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
PPETR QA FND + +VLVASDA+GMGLNL I R+IFS++ KF+G + L++ ++
Sbjct: 361 PPETRAEQARDFNDENGRAEVLVASDAVGMGLNLKIKRMIFSSLHKFNGKQDVPLSLTQI 420
Query: 184 KQIAGRAGRYGSKFPV-----------------------GEVTCLDSEDLPLLHKSLLEP 220
KQIAGRAGR+G G VT DLP+L L +P
Sbjct: 421 KQIAGRAGRFGMSTTTPDPHATPQLDLPSIAPDEKPSEGGIVTTFHESDLPILRSLLHQP 480
Query: 221 SPMLESAGL-FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV 279
P + A L P ++ + + L P++ +L+H + N + + L +A V
Sbjct: 481 LPPITRATLDVPFENMSALAALLPPETKFSELLDHVYSLVLVPPNMTLGSMQHKLPLAKV 540
Query: 280 IDQL--PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF--------- 328
+++ L L E L +PV+ D + A+ Y+ G V L +F
Sbjct: 541 VEEFRSGLTLSEMDLLTYAPVNGRDPRALGVYHSLASTYASVGHVTLDNMFDSSGFYEQL 600
Query: 329 -----------TPGTLQVPKTQAA-------------LRELESIHKVLDLYVWLSFRLEE 364
P + + P++Q L +E++HK L LY+WLS+R E
Sbjct: 601 RKMEKVINDLINPPSSREPQSQTQEKPKSVSQIISDNLPGMETLHKTLVLYIWLSYRREV 660
Query: 365 SFPDRELAASQKAICSMLIEEFLERL-GWQK 394
SFPDRE A K +++E+ LE L G+QK
Sbjct: 661 SFPDREKALGYKERTEVVLEKCLEHLPGYQK 691
>gi|315052550|ref|XP_003175649.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
gi|311340964|gb|EFR00167.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
Length = 771
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/407 (36%), Positives = 232/407 (57%), Gaps = 20/407 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI++++ + G
Sbjct: 281 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIRRLVSLMG 340
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 341 DTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKTTGRRAAIV 400
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L+
Sbjct: 401 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLS 460
Query: 180 VPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
+ EVKQI GRAGRY S K VG VTCLD DLP + +++ + L++A
Sbjct: 461 ISEVKQIGGRAGRYRSAAQSSNSTNVNEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAA 520
Query: 228 GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLP-L 285
G+ P +I YS + P + +G + LE +++ +F ++ ++D + L
Sbjct: 521 GILPLDSVIDSYSNMFPPDTPFGYIYQRLERVSRTDSPFFMCKIQDTEATFGLLDNIQGL 580
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QA 340
+ +K +F +P+ D + ++ + FA ++ +L +I L P + +
Sbjct: 581 NVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDKPVSGDDKE 640
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LR LE++H+ L LY+WL +R F DR LA K + + ++ L
Sbjct: 641 YLRSLEALHRSLILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 687
>gi|392567821|gb|EIW60996.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 645
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 231/431 (53%), Gaps = 27/431 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQ++ K RG ++T A+LGI A E+HLCG+ +A+P+I+ I++ GD +++
Sbjct: 184 WDVAVIDEIQLIADKNRGGAWTSAVLGINAAEIHLCGEESAIPVIEAIIRDLGDTLEINR 243
Query: 68 YERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERL+PLV LG S +Q GDC V FSR I+ +K IE K C++ YG LPPE
Sbjct: 244 YERLTPLVVAEESLGGDLSKVQKGDCAVAFSRTGIFGMKSRIEEENKMRCALAYGRLPPE 303
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R QA FND S++DVLV SDAIGMGLNL I R+IF + KFDG R ++ ++KQI
Sbjct: 304 IRAEQAALFNDPKSDYDVLVGSDAIGMGLNLKIKRVIFEAVAKFDGGRSRVMSSSQIKQI 363
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF-DLIYMYSRL 242
AGRAGR+ G P G VT L + DL ++ K+L P + A + D + + L
Sbjct: 364 AGRAGRFGMHGDDTPGGVVTTLHAGDLEIVRKALAAPYEPIRYARISMGLPDFLRVVRAL 423
Query: 243 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDM 300
P S + + F+ +KL + E+ IDQ L L + L +P
Sbjct: 424 PPGFSQMTVADVFVYVSKLHPRMEYHAVNELETCFKFIDQFIDCLTLENRLLAQNAPCPW 483
Query: 301 NDDISSQG------LTQFATNYSKKGIVQLREIFT----------PGTLQVPKTQ--AAL 342
DD + +G L + S +G +Q I +L+ Q AAL
Sbjct: 484 RDDNAVRGAQAIMELHREHFRVSLEGALQRAGILKNINNALVMMENDSLKCDSKQIVAAL 543
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTP 402
+LE++HKV+ LY+W S+R +FPD+ +A + + + ++ LE L + R+ P
Sbjct: 544 AKLETVHKVIVLYLWYSYRFSVAFPDQAMAFELRRLTELAMDWCLEVL--HQMRINAPNP 601
Query: 403 RPKLNSAVVSR 413
+V+ R
Sbjct: 602 AVAARKSVLER 612
>gi|326478234|gb|EGE02244.1| mitochondrial ATP-dependent RNA helicase Suv3 [Trichophyton equinum
CBS 127.97]
Length = 772
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 231/407 (56%), Gaps = 20/407 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+++ + G
Sbjct: 281 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMG 340
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 341 DTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIV 400
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L+
Sbjct: 401 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLS 460
Query: 180 VPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
+ EVKQI GRAGRY S K VG VTCLD DLP + ++L + L++A
Sbjct: 461 ISEVKQIGGRAGRYRSAAQSSSSTNANEKENVGLVTCLDEADLPYIRAAMLAEAEPLDAA 520
Query: 228 GLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-L 285
G+ P +I YS + P + +G + LE ++ +F ++ ++D + L
Sbjct: 521 GILPLDFVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGL 580
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QA 340
+ +K +F +P+ D + ++ + FA ++ +L +I L P + +
Sbjct: 581 NVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDRPVSGDDKE 640
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LR LE++H+ L LY+WL +R F DR LA K + + ++ L
Sbjct: 641 YLRSLEALHRSLILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 687
>gi|392596329|gb|EIW85652.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 889
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 237/456 (51%), Gaps = 44/456 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ + D AVIDEIQM+ RG ++T A+LG+ A ELHLCG+ AVP+++ IL+ TG
Sbjct: 376 MLELDAQPDVAVIDEIQMIADPERGPAWTHAVLGLPAKELHLCGEETAVPVVEAILRDTG 435
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V YERLSPL L G + ++ GDC+VTFSR I+ +K+ IE C++
Sbjct: 436 DELIVNRYERLSPLSVEESSLDGDWGLVRKGDCVVTFSRTGIFNIKREIEEATGLRCAVA 495
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R+ QA FND +SE+DV++ SDAIGMGLNL I R++F T++KFDG R L+
Sbjct: 496 YGKLPPEIRSEQAALFNDPNSEYDVMIGSDAIGMGLNLKIKRVVFETLRKFDGTRERWLS 555
Query: 180 VPEVKQIAGRAGRYGSKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
+ ++KQIAGRAGRYG G VT L DLP+LHK+L P+P + A L +
Sbjct: 556 LSQIKQIAGRAGRYGLHAEAGGTVTTLTPTDLPMLHKALATPAPAVPCAILDVGGARLEA 615
Query: 239 YSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ--LPLRLHEKYLFCI 295
S P ++S+ L+ ++ + + ++A +D L L EK
Sbjct: 616 LSHALPANASMEAHLQVPTYISRRQRPFGVVRHARLPQIAEFLDTRGTDLTLAEKMTLAY 675
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL-----REIFTPGTLQVPKTQAAL-------- 342
+PV D ++ + L +F Y +V L + F V + AAL
Sbjct: 676 APVAWQDQLTMEVLGEFCRMYRNTVLVDLFKALEKAPFVETLEGVEERAAALASSGVAAA 735
Query: 343 -----------------------REL---ESIHKVLDLYVWLSFRLEESFPDRELAASQK 376
REL E++HKVL LY+WL R ++ E A + K
Sbjct: 736 TAGGDAGEGKVVVEAQGEEVTDARELQIIETLHKVLVLYLWLGNRAPAAYHQTEQAFALK 795
Query: 377 AICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVS 412
++ L+ + W++ K R L +VV+
Sbjct: 796 TRVERALDVGLQSMSWRRAAKAKGKARVPLPPSVVA 831
>gi|449295757|gb|EMC91778.1| hypothetical protein BAUCODRAFT_52931, partial [Baudoinia
compniacensis UAMH 10762]
Length = 575
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 238/444 (53%), Gaps = 42/444 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ VPLI+++ G
Sbjct: 131 MMPLNATMDVAVIDEIQMIGNAERGWAWTQALLGVKAKEVHLCGEERTVPLIRELCASVG 190
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ Y+RLSPL L G ++ GDC+V+FS I+ L++ IE + + V
Sbjct: 191 DKLEIHRYQRLSPLEVAGESLNGDLRKLRKGDCVVSFSVMGIHALRRQIEQQTGRKVATV 250
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ ++E+D LVASDA+GMGLNL I RIIF + KFDG + R L
Sbjct: 251 YGSLPPETRAQQARLFNEPNNEYDFLVASDAVGMGLNLAIKRIIFESSSKFDGQQRRTLG 310
Query: 180 VPEVKQIAGRAGRY---------------------------------GSKFPVGEVTCLD 206
V ++KQIAGRAGRY G++ VG VT ++
Sbjct: 311 VADIKQIAGRAGRYRTASFNAKATEEKEDLAAKKGDPPFEKVENAASGNRDNVGLVTTIE 370
Query: 207 SEDLPLLHKSLL-EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSEN 264
D P++ ++ EP P +++AGLFP ++ +S P + + IL E +++
Sbjct: 371 PFDFPIVAAAMTAEPEP-IKTAGLFPPSSVLERFSSYFPPGTPFSYILIRLHELSQMHNR 429
Query: 265 YFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKG 320
+ +E + +A +I+ + L + ++ + C +P + I + + FA N S
Sbjct: 430 FHLCGLKEQIFIADLIEPVKGLTISDRNIICNAPAGRREQIWQKLMPAFARCIANQSGGS 489
Query: 321 IVQL-REIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAIC 379
IV + +V ++ L ELE +HK + Y+WLS+R F R LA K++
Sbjct: 490 IVDIEELPLELLEAEVSASREYLVELERLHKGIVGYLWLSYRFAGIFTTRALAFHVKSMV 549
Query: 380 SMLIEEFLERLGWQKPRVKKVTPR 403
IEE L R + + +K R
Sbjct: 550 EERIEEVLGRFSFTEETRRKAAAR 573
>gi|453081498|gb|EMF09547.1| hypothetical protein SEPMUDRAFT_72359 [Mycosphaerella populorum
SO2202]
Length = 745
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 236/422 (55%), Gaps = 30/422 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+ LLG+ A E+HLCG+ VPLI+++ G+ +++ Y
Sbjct: 171 DVAVIDEIQMIGNAERGWAWTQGLLGVMAREVHLCGEERTVPLIKELCASVGEKLEIHRY 230
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSPL + L G ++ GDCIV+FS I+ L+K +E + VYGSLPPET
Sbjct: 231 QRLSPLAVSDSSLDGDLRKLRKGDCIVSFSVMGIHALRKQVEKSTGRKVATVYGSLPPET 290
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +++D LVASDA+GMGLNL I RIIF + KF+GV + L++ ++KQI
Sbjct: 291 RAQQARLFNDPDNDYDYLVASDAVGMGLNLAIRRIIFESSSKFNGVSRQRLSIADIKQIG 350
Query: 188 GRAGRY--------------------GSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLES 226
GRAGR+ G +G VT L+ D P++ ++ EP P ++S
Sbjct: 351 GRAGRFRIAEQGKIGAASAEELAAAKGEAANLGLVTTLERFDFPVVRAAMSAEPEP-IKS 409
Query: 227 AGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AGLFP ++ ++ P + + IL E +++ + + + +A +I+ +
Sbjct: 410 AGLFPPAAILERFAGYFPPGTPFSYILTRLHELSQIHSRFHLCGLRDQVWIADIIEGVEG 469
Query: 285 LRLHEKYLFCISPVDMND-DISSQGLTQFA---TNYSKKGIVQLREI-FTPGTLQVPKTQ 339
L + ++ + C SP +D D+ Q + +A + S I+ ++E+ ++ T+
Sbjct: 470 LSVSDRNILCSSPAAKSDLDLWKQLMPAYARCISTQSGGNILDIKELPLEIMEAEIQGTR 529
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
LRELE +HK + +Y+WLS+R F R LA K + IE+ L + + + +K
Sbjct: 530 EYLRELERLHKGIVVYLWLSYRFAGIFSTRSLAFHVKGLVEERIEKTLSHFSFSEAQRRK 589
Query: 400 VT 401
+
Sbjct: 590 IA 591
>gi|320590452|gb|EFX02895.1| mitochondrial ATP-dependent RNA helicase [Grosmannia clavigera
kw1407]
Length = 780
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 222/418 (53%), Gaps = 36/418 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+ + RG+++T+ALLG+ A E+HLCG+ AV L++ + GD V Y
Sbjct: 301 DVAVIDEIQMMADEDRGWAWTQALLGVQAREVHLCGEDRAVDLVRALCARMGDKCVVHRY 360
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLS L ++ L G F N++ GD +V+FSR ++ LK IE C+IVYGSLPPET
Sbjct: 361 ERLSALQTMSKSLRGDFGNLRKGDAVVSFSRVGLHTLKSGIEKMTGRRCAIVYGSLPPET 420
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +++D LVASDAIGMGLNL I R+IF T K DG+ R LTV E++QI
Sbjct: 421 RAQQAALFNDPDNDYDFLVASDAIGMGLNLEIKRVIFETATKHDGMSFRHLTVSEIRQIG 480
Query: 188 GRAGRYGSKFPV--------------------------GEVTCLDSEDLPLLHKSLLEPS 221
GRAGR+ + G V L+ EDL ++ + +
Sbjct: 481 GRAGRFRTASQAVKTAAAVASTPATTPATTLAKRWGTPGYVATLEDEDLSVVQGAFTTNA 540
Query: 222 PMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVI 280
L+ AG+ P I ++R P + + IL+ E +++S + E L VA +I
Sbjct: 541 EPLQWAGIQPPTFAIERFARYFPPETPFSFILQRVRELSRISGRFRLCTPNESLDVADII 600
Query: 281 DQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT 338
PL ++++ +F +P + D + + A S+ L +I L +
Sbjct: 601 QPFPLSIYDRCVFITAPCALRDPGQKEIIAAMARCVSQMSGGHLLDIPELNLEILDASRD 660
Query: 339 ------QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
Q L LE++HK + LY+WLS+R F ++LA K++ I E+LE L
Sbjct: 661 DYHLGHQQYLARLEALHKAITLYLWLSYRYVGVFVSQDLAFHVKSLVEDKITEYLENL 718
>gi|393911127|gb|EFO26445.2| hypothetical protein LOAG_02037 [Loa loa]
Length = 785
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + + AVIDEIQML ++RG+++TRALLGI A E+HLCG+ AAV +++ +L G
Sbjct: 330 MVPVDVNVEVAVIDEIQMLRDQSRGWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIG 389
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V YER +PL L N++ GDC+V FS ++ + K + G +++Y
Sbjct: 390 EHVEVHRYERKTPLTVNKEALKKLDNVKDGDCLVCFSVSMLFSVAKTLMKLGVQ-PTVIY 448
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI RIIF +F E +
Sbjct: 449 GALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--AN 503
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
V Q+AGRAGR+ S + G VT L D+PLL + EP +E+AG+ P + + +S
Sbjct: 504 YHVMQVAGRAGRFQSAYQKGWVTTLRPADMPLLEAFMKEPIKPIETAGIAPTSEQLETFS 563
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
P +S I++ F+ + LS+ + + E+ K+A +ID +PL + KY FC +PVDM
Sbjct: 564 YHLPHASFLSIIDMFISISSLSKKFHLCDIEQFRKLAELIDDIPLSIKVKYAFCTAPVDM 623
Query: 301 NDD--ISSQGLTQFATNYSKKGIVQLR---EIFTPGTLQVPKTQAALRELESIHKVLDLY 355
D ++ + A +++ + EI L P + L ++ ++ ++DLY
Sbjct: 624 EVDNGVARTCFVRIARRFAEGQAINYNWFCEIIQ-WPLPKPTSVTMLLDMCKLYNLIDLY 682
Query: 356 VWLSFRLEESFPDRE 370
+WLS++ + FPDRE
Sbjct: 683 LWLSYKFPDIFPDRE 697
>gi|296815444|ref|XP_002848059.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
gi|238841084|gb|EEQ30746.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
Length = 752
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 239/431 (55%), Gaps = 24/431 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI++++ + G
Sbjct: 263 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIRRLVSLMG 322
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDC+V FSR I+ LK+ IE +IV
Sbjct: 323 DTLEIHNYKRLNPLKTMASSLKGDIKRLEKGDCVVAFSRVGIHSLKQEIEKTTGRRAAIV 382
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L+
Sbjct: 383 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVMKRLPTGIQRLS 442
Query: 180 VPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLL-EPSPMLES 226
+ EVKQI GRAGRY S K VG VTCLD DLP + +++ EP P L++
Sbjct: 443 ISEVKQIGGRAGRYRSAAQPSNSSKNDDKENVGLVTCLDEADLPYIRAAMMAEPQP-LDA 501
Query: 227 AGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P I YS + P + +G + LE A+ +F ++ ++D +
Sbjct: 502 AGILPLDSAIDNYSNMFPPDTPFGYVYQRLERVARTDSPFFMCKIQDTEATFGLLDNIQG 561
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKT--- 338
L +K +F +P+ D + ++ + FA ++ G++ + E+ L P +
Sbjct: 562 LNAIDKMVFMSAPLRATDPVMARVIRAFAECVGQQKSGGLLDIPELDLE-ILDKPVSGDD 620
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVK 398
+ LR LE++H+ L LY+WL +R F DR LA K + + ++ L K
Sbjct: 621 KEYLRSLEALHRSLILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTLTEFSANSKLRK 680
Query: 399 KVTPRPKLNSA 409
+ + +L A
Sbjct: 681 QALRKKRLKGA 691
>gi|195343379|ref|XP_002038275.1| GM10744 [Drosophila sechellia]
gi|194133296|gb|EDW54812.1| GM10744 [Drosophila sechellia]
Length = 620
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 206/345 (59%), Gaps = 7/345 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L + ++ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPEPIKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQ 339
+P++ + A YS+ + I L + TQ
Sbjct: 564 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKKLWLAIQATQ 608
>gi|119479159|ref|XP_001259608.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
gi|119407762|gb|EAW17711.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
Length = 776
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 229/409 (55%), Gaps = 25/409 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD VIDEIQML RG+++TRA+LG A ELHLCG+ VPL++++ +TG
Sbjct: 270 MVNLGQPYDVGVIDEIQMLADPKRGWAWTRAVLGARAKELHLCGETRVVPLVRELAALTG 329
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ Y+RL+PL ++ + G N+Q GDC+V FSR I+ LK IE +IV
Sbjct: 330 DRLEIHRYKRLNPLKVMDQSIRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGRRAAIV 389
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA FND +++D LVASDAIGMGLNL+I RIIF T+ K L L+
Sbjct: 390 YGSLPAEIRTQQAKLFNDPDNDYDFLVASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLS 449
Query: 180 VPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
VPE+KQI GRAGRY + +G VT L+ DLP + +++ P L +A
Sbjct: 450 VPEIKQIGGRAGRYRPAAQQDKKDNNDADSNIGLVTALEEVDLPYIREAMDTEPPPLTAA 509
Query: 228 GLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ-LPL 285
G+FP + +S P D +++ LE +++ +F + L A VID + L
Sbjct: 510 GIFPPDPVFQKFSAYFPRDVPFEYLIKRLLEVCEVNPLFFLCDPRGQLDNAEVIDSVVGL 569
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQLREIFTPGTLQVP--KTQA 340
+ ++ F +P+ D S FA +S G++ + ++ L+ P +
Sbjct: 570 PIEDQVTFMAAPMYTRDRKSRSVACAFAECVAEHSGGGLLDIPDLNLE-ILEEPVSGNKD 628
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE +H+ + LY WLS+R F DR LAA K ++EE + R
Sbjct: 629 YLHELEGLHRSVILYSWLSYRFGGIFTDRTLAAHVKE----MVEERMVR 673
>gi|327299422|ref|XP_003234404.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
gi|326463298|gb|EGD88751.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
Length = 771
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 230/407 (56%), Gaps = 20/407 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+++ + G
Sbjct: 281 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMG 340
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 341 DTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKVTGRRAAIV 400
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L+
Sbjct: 401 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLS 460
Query: 180 VPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
+ E+KQI GRAGRY K VG VTCLD DLP + +++ + L++A
Sbjct: 461 ISEIKQIGGRAGRYRSAAQSSSSRIANEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAA 520
Query: 228 GLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-L 285
G+ P +I YS + P + +G + LE ++ +F ++ ++D + L
Sbjct: 521 GILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGL 580
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QA 340
+ +K +F +P+ D + ++ + FA ++ +L +I L P + +
Sbjct: 581 NVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDRPVSGDDKE 640
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LR LE++H+ L LY+WL +R F DR LA K + + ++ L
Sbjct: 641 YLRSLEALHRSLILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 687
>gi|443717288|gb|ELU08439.1| hypothetical protein CAPTEDRAFT_184427 [Capitella teleta]
Length = 774
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 221/400 (55%), Gaps = 13/400 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y+ AVIDEIQML + RG+++TRALLGI A E+H+CG+ A I++I + G
Sbjct: 324 MTSLDTPYEVAVIDEIQMLRDENRGWAWTRALLGINAEEVHVCGEGTAEEFIREIAESVG 383
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D ++ +YERL+PL ++ PLG +Q GD +V F++ IY++ + +E+ G +++Y
Sbjct: 384 DTFEMNTYERLTPLEVMDEPLGDLKYVQPGDAVVCFTKADIYKVSQKLETIGIE-SAVIY 442
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK--FDG---VEL 175
GSLP T+ QA FN+ + VLVA+DAIGMGLNL+I RI+F ++ K DG
Sbjct: 443 GSLPSGTKVSQANNFNNPNHPAKVLVATDAIGMGLNLSIQRIVFYSLNKPSVDGEGNFTK 502
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+ E QIAGRAGR+G G VT L EDLP L K + +E GL P +
Sbjct: 503 SSIKPHEALQIAGRAGRFGKTKKTGLVTTLFGEDLPKLKKLMATSIQKIEKVGLQPAVNQ 562
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +++ P S+L +++ F+ L + YF + +A VI+ +PL L +Y FC
Sbjct: 563 IELFAYHLPQSTLSNLIDIFMTLCSLDHSRYFMCRMDSFKTLADVIEGVPLDLTVRYTFC 622
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGT----LQVPKTQAALRELESIHK 350
SP+ + A +SK L E F L+ PKT A L LE +
Sbjct: 623 CSPISTTKPFVIAAMLMMARRFSKGS--PLTEKFLTSVIEWPLKSPKTLADLVHLEDVFD 680
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
VLDLY+WL +R + F E + + + + I+E ++ +
Sbjct: 681 VLDLYLWLGYRFPDMFVHMEETRAMQGVLELKIQEAVQEI 720
>gi|429857984|gb|ELA32820.1| ATP-dependent RNA helicase suv3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 786
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 216/409 (52%), Gaps = 30/409 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ V LI+ I GD+ V Y
Sbjct: 269 DVAVIDEIQMIGDMDRGWAWTQALLGVMAKEVHLCGEERVVDLIKSICASIGDECIVHRY 328
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSPL + L S +Q GD +V F+R ++ LK AIE + C+IVYGSLPPET
Sbjct: 329 QRLSPLETMKQSLDNDLSKLQKGDAVVAFTRVNLHGLKNAIEEQTGRRCAIVYGSLPPET 388
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND +++D LVASDAIGMGLNL I R+IF T K DG + R L E+KQI
Sbjct: 389 RAQQAALFNDPDNDYDFLVASDAIGMGLNLEIKRVIFETATKHDGTQFRVLNTSEIKQIG 448
Query: 188 GRAGRYGS--------------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
GRAGRY + + +G VT LD +DL + K+ + LE+A
Sbjct: 449 GRAGRYKTARQATTSDAGADTNAVAPVEEKKMGYVTTLDPDDLQTIRKAFQNEAEPLETA 508
Query: 228 GLFPNFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 286
+ P +I +S PD+ L IL E A +SE Y E +++A I + P+
Sbjct: 509 VIHPPAFVIERFSEYFPPDTPLSFILLRLRELAPVSERYSVHVNERSIEIADTIQEFPMT 568
Query: 287 LHEKYLFCISPVDMNDDISS--QGLTQFATNYSKKGIVQLREI------FTPGTLQVPKT 338
+ E+ +PV+ + + + + + ++EI + +
Sbjct: 569 VQERITILNAPVNKDKGQKEIVRAIAKRIATRRNGALYDIKEIPLELLDASIDDIGQQDG 628
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ LR +E++H+ + LY+W+S+R F + LA K I +L
Sbjct: 629 RKYLRAIETLHQAITLYLWVSYRFPSIFVSQTLAFHMKDFVEEKIAHYL 677
>gi|393220740|gb|EJD06226.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 643
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 153/434 (35%), Positives = 226/434 (52%), Gaps = 44/434 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D Y+ AV+DEIQML RG ++T A+LG+ A E+HLCG+ AVPL+Q++L+ G
Sbjct: 137 MIDTSKRYEVAVVDEIQMLSDPERGGAWTAAVLGLHAEEIHLCGEAGAVPLVQEMLKDVG 196
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V YERL+PL + L G + IQ GDC+V+FSR ++ LK+ IE C+I+
Sbjct: 197 DELIVHRYERLTPLTVASKSLKGDLTKIQKGDCVVSFSRSMLFSLKEQIEEATGMRCAII 256
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R+ QA RFND S +DVLV SDAIGMGLNL I RI+F + +K+DG R L+
Sbjct: 257 YGRLPPEVRSEQAERFNDPDSGYDVLVGSDAIGMGLNLKIKRIVFESSQKWDGTNQRALS 316
Query: 180 VPEVKQIAGRAGRYG----SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+ ++KQIAGRAGR+G P G VT + DLP + K++ S + + P
Sbjct: 317 LSQLKQIAGRAGRFGMHGTDTDPGGVVTTIHERDLPTVRKAVESRSVPVSKRAILPTTQN 376
Query: 236 IY------MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLK-VATVIDQL--PLR 286
++ + + + + + A+L+ Y + ++ + V VID
Sbjct: 377 MFHSLEQLVRPQKQKQTKFSAVFDILRSTARLAPCYALRDLGKMAEDVVPVIDTYCKDFT 436
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP-GTLQV---------- 335
L E+ ++PV D +F +Y K+ V+L E G L+
Sbjct: 437 LEERLRVFLAPVIWRDGAVKMAAKRFINSYRKEMHVKLFECLRGVGLLEARDFVRDARAK 496
Query: 336 -------------------PKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQK 376
P L +LES+++V+ +Y+W S RL +FP+RE A K
Sbjct: 497 EASSKSSSSSSSSSSEGVPPLKIDTLLKLESLYRVVVVYMWFSLRLPLAFPERERAVKLK 556
Query: 377 AICSMLIEEFLERL 390
IE L+R+
Sbjct: 557 EEVEEGIEWTLQRM 570
>gi|346318514|gb|EGX88117.1| ATP-dependent RNA helicase SUV3 [Cordyceps militaris CM01]
Length = 761
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 226/410 (55%), Gaps = 25/410 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDEIQM+G RG ++T A LG+ A ++H+CG+ V LI+ + GD V
Sbjct: 296 FDVAVIDEIQMIGNADRGSAWTTAFLGVQAKDVHVCGEERTVALIESLCATIGDKCVVHR 355
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERLSPL ++ L G + ++ GD IV FSR +++ LK+ +E C+I+YG+LPPE
Sbjct: 356 YERLSPLKTMSTALEGRYHQLEKGDAIVAFSRVSLHALKRQVEQETGRRCAIIYGTLPPE 415
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +QA FND +++D +VASDAIGMGLNL I R+IF ++ KFDG + R L+VPE KQI
Sbjct: 416 VRVQQAALFNDPDNDYDFVVASDAIGMGLNLEIKRVIFESVYKFDGFQHRMLSVPEFKQI 475
Query: 187 AGRAGRYGS--------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
GRAGRY S + VG VT +D +D+ L K+ + ++ A + P
Sbjct: 476 GGRAGRYRSAQQAQDDATPADNAEQKVGYVTAMDRQDVRALTKAFQQDVEDIKHAYIQPP 535
Query: 233 FDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKY 291
++ + S PD+ L +L A +S ++ L++A +I LPL ++++
Sbjct: 536 PSVVERFASYFPPDTPLSFLLMRIKAAATVSPHFRLNISSSALEIADIIQDLPLSIYDRL 595
Query: 292 LFCISPVDMNDDISSQGLTQFA--TNYSKKG-IVQLREI------FTPGTLQVPKTQAAL 342
C P+ ++ + S L A +++ G ++ +REI L + L
Sbjct: 596 SICHMPISLSSEGSVAALKAMARVVAHNESGDLLSIREIPLEVLDLRLTELSGKEATDYL 655
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGW 392
+LES+H L+ Y+WLS+R F ELA + + + + LE+L +
Sbjct: 656 YKLESLHMALNGYIWLSYRFTGLFRSIELAFHARTLVEEKLIDSLEKLNF 705
>gi|393241110|gb|EJD48633.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 233/424 (54%), Gaps = 34/424 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ YD AV+DEIQM+G + RG ++T A+LG+ A+ELHLCG+ +AVP+++ + + TG
Sbjct: 137 MLQWITHYDVAVVDEIQMIGDEQRGGAWTSAVLGLMADELHLCGEESAVPVVEALAKETG 196
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V YERLSPL + L G FS ++ GDC+V FSR I+ LK IE C++
Sbjct: 197 DELIVNHYERLSPLHAASSSLEGDFSKLREGDCVVAFSRRLIFDLKHKIEQSTSFRCAVA 256
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R QA FND +E+ ++VASDAIGMGLNL I RIIF T +K+DG ++ L+
Sbjct: 257 YGMLPPELRAEQAALFNDPDNEYGIMVASDAIGMGLNLKIKRIIFYTTQKWDGQQMIPLS 316
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
+ VKQIAGRAGR+ + G T ++ EDLP++ ++ P+ L+ A + P + +
Sbjct: 317 LSTVKQIAGRAGRFSLGAQQTSAGIATSMEPEDLPVIQLAMRIPTRPLKRAVIAPTPEQV 376
Query: 237 YMYSRLHPDSSLYGILEHFLE-NAKLSENYFFANCEEVLKVATVIDQL---PLRLHEKYL 292
+L P + ++ L A++ + + ++ A +++ L + + E ++
Sbjct: 377 QAILQLLPAGTPPSVVFEILPWMARVPNMFTLVDVAGAVQQAKLLETLGGGTMSISEYWV 436
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKK----------GIVQLREIFTPGTLQ-------- 334
+P + +++ ++ +++ Y + GI +R + L+
Sbjct: 437 LLHTPAPLKEEVVTEAVSRLVPAYKDRQSTSLISILDGIGLMRILEQASKLRHLYEAEGS 496
Query: 335 --------VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEF 386
P L ELE +H+VL +Y+WLS+RL +F ++E A K I F
Sbjct: 497 TARQEHGNPPVNAPVLAELERMHRVLIMYLWLSYRLPVAFSEQERAFEIKQELERCIAFF 556
Query: 387 LERL 390
L L
Sbjct: 557 LSEL 560
>gi|392900738|ref|NP_001255542.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
gi|320202869|emb|CBZ01775.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
Length = 438
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 218/380 (57%), Gaps = 13/380 (3%)
Query: 18 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL 77
ML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL
Sbjct: 1 MLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIA 60
Query: 78 NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 137
+ + S+SNI+ GDCIV FS+ +I+ K +E G +++YG LPP T+ QA +FND
Sbjct: 61 DKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFND 119
Query: 138 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF 197
E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ +
Sbjct: 120 PDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAY 175
Query: 198 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 257
G T + EDL L L E + + G+ P +D I +S P +S +L+ F+
Sbjct: 176 ANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVS 235
Query: 258 NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 317
+S+++F ++ ++A +IDQ+PL L +Y FC SP++ D +S + A +S
Sbjct: 236 VCSVSDHFFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFS 295
Query: 318 KKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEESFPD----RE 370
G E PK L E LE +++LD Y+WLS R + PD RE
Sbjct: 296 -TGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVRE 354
Query: 371 LAASQKAICSMLIEEFLERL 390
+ ++ +E F+ L
Sbjct: 355 ASKHLDSMIQEGVESFMSLL 374
>gi|189206057|ref|XP_001939363.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975456|gb|EDU42082.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 761
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/448 (34%), Positives = 236/448 (52%), Gaps = 49/448 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + +D AVIDEIQM+ + RG+++T+A LG+ A E+HLCG+ VP+++++ + G
Sbjct: 261 MAPLNTPFDVAVIDEIQMISHQERGWAWTQAFLGLQAREIHLCGEARTVPIMRELCALVG 320
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V V Y RL+PL P++ L G+ + ++ GDC+V FS AI+ L++ IE + C+IV
Sbjct: 321 DKVHVHEYNRLTPLQPMDRSLQGNLNLLEKGDCVVAFSVLAIHALRRLIERKTGKKCAIV 380
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPETR +QA FND +++D LVASDAIGMGLNL I R+IF T K +G +L L
Sbjct: 381 YGGLPPETRAQQARLFNDPDNDYDYLVASDAIGMGLNLAIKRVIFETTVKNNGEQLVPLQ 440
Query: 180 VPEVKQIAGRAGRYGS---------------------------KFP------------VG 200
+ E+KQIAGRAGRY + K P VG
Sbjct: 441 ISEIKQIAGRAGRYKTAHQAITKDSEKASVADTAIDPVIGLDDKQPDTEEVVQAEPQTVG 500
Query: 201 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENA 259
T L+ DL L + + + SAGLFP ++ ++ P + + IL +
Sbjct: 501 WATTLERNDLVSLKAGMNKEPEAITSAGLFPPSVIVERFASYFPPGTPFSYILLRLHTIS 560
Query: 260 KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS- 317
+++ + E L +A V+ L L + ++ C +PV ++ L + AT +
Sbjct: 561 EMNPRFHLCALREQLAIADVLHPLENLSIQDRITLCAAPVSSRKANETKFLKELATYIAD 620
Query: 318 -KKGIVQLREIFTPGTLQVP--KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAAS 374
K G + E G + VP +T+ LR LE +HK++ Y+WLS+R R LA
Sbjct: 621 GKSGSILDCETLPLGVMDVPLARTREYLRSLEDLHKMIVCYLWLSYRFPNILTTRSLANH 680
Query: 375 QKAICSMLIEEFLERLGWQKP---RVKK 399
K + IE L + + + R+KK
Sbjct: 681 MKKLVEDKIEYTLTQFSFTEESRLRIKK 708
>gi|223995241|ref|XP_002287304.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976420|gb|EED94747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 504
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 222/399 (55%), Gaps = 29/399 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
+A + D+D VIDEIQM+ RGF++TRAL+G+ E+H+CG A ++ +I Q+ G
Sbjct: 103 LACIDEDFDVVVIDEIQMICDSFRGFAWTRALMGVRCKEIHVCGGLEAKSIVAKIAQMCG 162
Query: 61 DDVKVQSYERLSPLVPLNVPL-------GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 113
DD ++++Y R L L L GS+SN+Q GDC+V FSR+ I+ +K+ IE
Sbjct: 163 DDFEMKTYTRFGELRVLENSLAATSTSKGSYSNVQPGDCVVAFSRNDIFAIKREIEQSTH 222
Query: 114 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 173
C ++YG+LPP R QA RFND +SE++VLVASDAIGMGLNL+I RIIF+++ K +G
Sbjct: 223 FKCCVIYGALPPAIRAEQARRFNDPNSEYEVLVASDAIGMGLNLSIKRIIFNSLFKNNGE 282
Query: 174 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
+ L VKQIAGRAGR S +P GEVT D D+ L K + ++ AG+ P
Sbjct: 283 SIVQLDHSLVKQIAGRAGRRNSPYPHGEVTTRDPFDMEHLRKCMSTEIEPIQKAGIIPTA 342
Query: 234 DLIYMYSRL-------HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 286
+ I ++ L + SL+ L +F E A+L N+F + V+ + + +
Sbjct: 343 NHIGLFDELLKEYGASKKERSLHETLRNFSEMAQLRGNFFLCRQKSFANVSKWLKDVDMP 402
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----- 341
K+ C+SPV+ + S + L ++ Y TPG + + + A
Sbjct: 403 STVKFTLCMSPVNESCPRSKRVLMRYVEMYVSGK--------TPGVHRSMRPREATSFHN 454
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPD--RELAASQKAI 378
L EL ++H L+L++WL +L + + R LA + AI
Sbjct: 455 LTELCTVHHELELFLWLQSKLPTNAVEQARALAMKEDAI 493
>gi|226293916|gb|EEH49336.1| ATP-dependent RNA helicase suv3 [Paracoccidioides brasiliensis
Pb18]
Length = 761
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/415 (38%), Positives = 232/415 (55%), Gaps = 33/415 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D D VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 280 MVPLGQDVDVGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 339
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ +N+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 340 DRLEIHHYERLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIV 399
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 400 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLS 459
Query: 180 VPEVKQIAGRAGRY---------GSKFP-------VGEVTCLDSEDLPLLHKSL-LEPSP 222
V ++KQI GRAGRY S P VG VT L+ DL + K+L EP P
Sbjct: 460 VSQIKQIGGRAGRYRPASNVTETDSSIPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEP 519
Query: 223 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE-NYFFANCEEVLKVATVID 281
+L SAGL P +I + P ++ + + L N L + N+F A+ + ++A ID
Sbjct: 520 IL-SAGLLPPDYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAID 578
Query: 282 QLP-LRLHEKYLFCISPVDMNDDISSQGLTQF----ATNYSKK----GIVQLREIFTPGT 332
+ L + +K +F +P M D S +F A N S G + L + P
Sbjct: 579 GIKGLGIDDKMVFLSAPAHMRDHQMSTIFREFVRCVAENRSGDILDIGDLPLDILDKP-- 636
Query: 333 LQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 637 --VSGDKTYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 689
>gi|395323837|gb|EJF56292.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 793
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 235/435 (54%), Gaps = 35/435 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AV+DEIQ++ + RG ++T A+LG+ A E+HLCG+ +AVPLI+ +++ TGD ++V
Sbjct: 325 FDVAVVDEIQLISDRQRGGAWTAAVLGLNAREIHLCGEESAVPLIEALVKQTGDTLEVNR 384
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y RL+PLV + L G S I+ GDC+VTFSR ++ L+K IE K C++ YG LPPE
Sbjct: 385 YNRLTPLVVADKSLNGDISRIKKGDCVVTFSRMGLFELQKNIEEATKMRCALAYGRLPPE 444
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-LRDLTVPEVKQ 185
R+ QA FND +S +DVLV SDA+GMGLNL I R++F T+ KFDG R L+ ++KQ
Sbjct: 445 IRSEQAALFNDPNSGYDVLVGSDAVGMGLNLKIRRVVFETVSKFDGTRGQRPLSASQIKQ 504
Query: 186 IAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
IAGRAGR+G G VT L DL L+ ++L L +A L +
Sbjct: 505 IAGRAGRFGMHGDDTAGIVTTLHPGDLDLVREALATSFEPLHTARLNMTMESYRKIVEAL 564
Query: 244 P-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ------LPLRLHEKYLFCIS 296
P +SS + E + +++S + F + E+ + ID LP+RL L S
Sbjct: 565 PWESSNITVAEVYHYVSRMSPLFEFQSIHELEQGFLFIDDFADCLTLPMRL----LATNS 620
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL-------------QVPK-TQA-- 340
P DD + G Y V + E+ G L +VP TQ
Sbjct: 621 PTPWRDDFAVTGARTMMEIYRDSFRVPIDEMLRRGRLLKKLNSALVLMEGRVPAFTQKDV 680
Query: 341 --ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVK 398
L LE++HKV+ LY+W S+R +FPD+E A + + + ++ LE L + R+K
Sbjct: 681 VPVLAHLETLHKVIALYLWFSYRHPVAFPDQEKAFKLRHLNELAMDWCLEVL--HQMRLK 738
Query: 399 KVTPRPKLNSAVVSR 413
P + V+ R
Sbjct: 739 TKDPAAQARKTVLDR 753
>gi|225684290|gb|EEH22574.1| ATP-dependent RNA helicase SUV3 [Paracoccidioides brasiliensis
Pb03]
Length = 764
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 161/415 (38%), Positives = 232/415 (55%), Gaps = 33/415 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D D VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 283 MVPLGQDVDVGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 342
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ +N+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 343 DRLEIHHYERLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIV 402
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 403 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLS 462
Query: 180 VPEVKQIAGRAGRY---------GSKFP-------VGEVTCLDSEDLPLLHKSL-LEPSP 222
V ++KQI GRAGRY S P VG VT L+ DL + K+L EP P
Sbjct: 463 VSQIKQIGGRAGRYRPASNVTETDSSIPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEP 522
Query: 223 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE-NYFFANCEEVLKVATVID 281
+L SAGL P +I + P ++ + + L N L + N+F A+ + ++A ID
Sbjct: 523 IL-SAGLLPPDYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAID 581
Query: 282 QLP-LRLHEKYLFCISPVDMNDDISSQGLTQF----ATNYSKK----GIVQLREIFTPGT 332
+ L + +K +F +P M D S +F A N S G + L + P
Sbjct: 582 GIKGLGIDDKMVFLSAPAHMRDHQMSTIFREFVRCVAENRSGDILDIGDLPLDILDKP-- 639
Query: 333 LQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 640 --VSGDKTYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 692
>gi|156049155|ref|XP_001590544.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980]
gi|154692683|gb|EDN92421.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 805
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 236/442 (53%), Gaps = 48/442 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+G + RG+++T+A+LG+ A E+HLCG+ LI+++ + G
Sbjct: 288 MVPLNTKVDIAVIDEIQMIGDEERGWAWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMG 347
Query: 61 DDVKVQSYERLSPLVPLNVPL---------------GSFSNIQTGDCIVTFSRHAIYRLK 105
D + + +Y+RL L +N L G S ++ GD I+ FSR I+ +K
Sbjct: 348 DKLVIHNYDRLGKLQVMNNCLSTKNNERDGPSEKGGGPVSKLEKGDAIILFSRMKIHAMK 407
Query: 106 KAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 164
IE++ K C+IVYGSLPPETR QA FND +++D LVAS+AIGMGLNL+I R+I
Sbjct: 408 NKIEAQHKGKRCAIVYGSLPPETRALQAALFNDPDNDYDFLVASNAIGMGLNLSIKRVIL 467
Query: 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYG---------------------SKFPVGEVT 203
++K+FDG +L L + E+KQIAGRAGRY ++ PVG VT
Sbjct: 468 ESIKRFDGTDLITLPLSEIKQIAGRAGRYKTARDAIEAGPIDVTDGIPAKPTEPPVGLVT 527
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLS 262
ED +L ++ + + + SAG+FP D+I ++ P S+ + I+ E +S
Sbjct: 528 TFYKEDHKILSNAMSKEAAQMTSAGIFPPADVIERFAERFPKSTPFSYIILRLHEIGSIS 587
Query: 263 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKK 319
+ +E + +A +I L + + +F +PV + D + L FA N +
Sbjct: 588 SQFHLCKLKEHVDIADIIQDFSLSIRNRLVFLAAPVSVRDSGGVEVLRAFARCVANNTGG 647
Query: 320 GIVQLREIFTPGTLQVPKT-------QAALRELESIHKVLDLYVWLSFRLEESFPDRELA 372
++ + E+ + P T + +R++E +HK + LY+WLS+R F + LA
Sbjct: 648 HVLDISELDIEVLDEDPDTFTSQQQREIYVRKVEGLHKKITLYLWLSYRFTGVFHSQALA 707
Query: 373 ASQKAICSMLIEEFLERLGWQK 394
K + I+ L + WQ+
Sbjct: 708 FHIKRLVEEKIDICLAKAEWQE 729
>gi|170580023|ref|XP_001895080.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598094|gb|EDP36072.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 635
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 218/370 (58%), Gaps = 18/370 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + + AVIDEIQML ++RG+++TRALLGI A E+HLCG+ AAV +++ +L G
Sbjct: 196 MVPVDVNVEIAVIDEIQMLRDQSRGWAWTRALLGIAAKEIHLCGEEAAVDIVRSLLDPIG 255
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V YER +PL L +N++ GDC+V FS ++ + K++ G +++Y
Sbjct: 256 EHVEVHRYERKTPLNVNKEALKKLNNVKDGDCLVCFSVSMLFSVAKSLMKLGVQ-PTVIY 314
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI RIIF +F E +
Sbjct: 315 GALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--AN 369
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
V Q+AGRAGR+ S + G VT L D+ LL + EP +E+AG+ P + + +S
Sbjct: 370 YHVMQVAGRAGRFQSAYQKGWVTTLRPTDMRLLEAFMKEPIKPIETAGIAPTSEQLETFS 429
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
P +S I++ F+ + LS+ + + E+ K+A +ID +PL + KY FC +PVDM
Sbjct: 430 YHLPHASFLSIIDMFISISSLSKKFHLCDIEQFRKLAELIDDVPLSIKVKYAFCTAPVDM 489
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ D ++ V++ P L P + L ++ I+ ++DLY+WLS+
Sbjct: 490 DVD----------NGVARACFVRIARRQWP--LPRPTSITMLLDMCKIYNLIDLYLWLSY 537
Query: 361 RLEESFPDRE 370
+ + FPDRE
Sbjct: 538 KFPDMFPDRE 547
>gi|302680394|ref|XP_003029879.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
gi|300103569|gb|EFI94976.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
Length = 625
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 220/417 (52%), Gaps = 25/417 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
S YD AV+DEIQM+ RG ++T A+LG+ A ELHLCG+ A+PL+Q+++ TGD++ +
Sbjct: 163 SSYDVAVVDEIQMIADDQRGCAWTNAVLGLAAKELHLCGEDTAIPLVQELIAQTGDELVI 222
Query: 66 QSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
YERL+PL V G FS I+ GDC+V FSR I+++K+ IE C++VYG LP
Sbjct: 223 NRYERLTPLEVEKESLKGDFSKIRKGDCVVCFSRQKIFQVKEEIEKATGLRCAVVYGGLP 282
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PE R+ QAT FND S +DVLV SDAIGMGLNL I R++FST +K DG + L++ + K
Sbjct: 283 PEVRSEQATLFNDPDSGYDVLVGSDAIGMGLNLKIGRVVFSTCQKHDGRKQVALSLSQTK 342
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR 241
QIAGRAGRY G PVG VT L +D+ + ++L + L+ AGL +L
Sbjct: 343 QIAGRAGRYGLHGGDKPVGYVTTLREDDMEHVRQALAAENQPLQRAGLNARNELYSAVRA 402
Query: 242 LHPDSSLYGI-LEHFLENAKLSENYFFANCEEVLK-VATVIDQL---PLRLHEKYLFCIS 296
P S + + L+ + + + + E++ + +A VID +RL + F +
Sbjct: 403 ALPRGSKFDLWLDALQYTSTIPSRLRYTDQEQIRRLMADVIDMEGTDTMRLVDITTFVAA 462
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT----------------QA 340
P+ D + + K V L+ + L + T ++
Sbjct: 463 PIGWRDAEQATIARRLLMLREKHMRVDLQLLLRDTGLLITLTDVERRMKRGKQGGAAAES 522
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRV 397
L +LE +HK+L YVWL R F A K +E L L W+ V
Sbjct: 523 MLMQLERLHKILSAYVWLGLRQPVQFCSAGEAEQLKHRVEAAMEWVLHALTWKGSEV 579
>gi|358374212|dbj|GAA90806.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus kawachii
IFO 4308]
Length = 640
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 157/407 (38%), Positives = 226/407 (55%), Gaps = 22/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ V+DEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TG
Sbjct: 158 MVSLGDQYEVGVVDEIQMIADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTG 217
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL N L G N+Q GDC+V+FSR I+ LK IE +IV
Sbjct: 218 DKLEIHRYERLNPLKVQNRSLKGDLKNLQKGDCLVSFSRVGIHALKADIEKNTGKRAAIV 277
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND +++D LVASDAIGMGLNL+ RIIF T+ K L+ L+
Sbjct: 278 YGSLPAEIRTQQASLFNDPDNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLS 337
Query: 180 VPEVKQIAGRAGRYGSKFP-----------VGEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
VPE+KQI GRAGRY S VG VT L+ DLP + +++ P L SAG
Sbjct: 338 VPEIKQIGGRAGRYRSAAQQQADSSEEDTNVGYVTSLEDIDLPYIREAMDSEPPPLVSAG 397
Query: 229 LFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LR 286
+ P + + P + L +++ + +++ +F + L+ A VID + LR
Sbjct: 398 ILPPDSVYQKVAAYFPSNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLR 457
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQAAL 342
++ F SP+ F ++ +L +I L+ P + L
Sbjct: 458 TADQLTFMASPMHTRLIAGRDAAIAFIKCVAEHSDGRLLDIQALNLEILEEPVSGNKEYL 517
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
ELE++HK + LY+WLS+R F DR LA+ K L+EE + R
Sbjct: 518 NELETLHKSVILYLWLSYRCGGVFTDRTLASHVK----QLVEERMVR 560
>gi|350639476|gb|EHA27830.1| hypothetical protein ASPNIDRAFT_185630 [Aspergillus niger ATCC
1015]
Length = 636
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 226/409 (55%), Gaps = 24/409 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ V+DEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TG
Sbjct: 152 MVSLGDQYEVGVVDEIQMIADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTG 211
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL N L G N+Q GDC+V+FSR I+ LK IE +IV
Sbjct: 212 DKLEIHRYERLNPLKVQNRSLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIV 271
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND +++D LVASDAIGMGLNL+ RIIF T+ K L+ L+
Sbjct: 272 YGSLPAEIRTQQASLFNDPDNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLS 331
Query: 180 VPEVKQIAGRAGRYGSKFP-------------VGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY S VG VT L+ DLP + +++ P L S
Sbjct: 332 VPEIKQIGGRAGRYRSAAQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVS 391
Query: 227 AGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P + + P + L +++ + +++ +F + L+ A VID +
Sbjct: 392 AGILPPDSVYQKVAAYFPSNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDG 451
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQA 340
LR ++ F SP+ F ++ +L +I L+ P +
Sbjct: 452 LRTADQLTFMASPMHTRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKE 511
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE++HK + LY+WLS+R F DR LA+ K L+EE + R
Sbjct: 512 YLNELETLHKSVILYLWLSYRCGGVFTDRTLASHVK----QLVEERMVR 556
>gi|396465720|ref|XP_003837468.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
gi|312214026|emb|CBX94028.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 227/429 (52%), Gaps = 37/429 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + +D AVIDEIQM+ RG+++T+A LGI A E+HLCG+ VP+++++ + G
Sbjct: 257 MAPLNTRFDVAVIDEIQMISHAERGWAWTQAFLGIQAKEIHLCGEARTVPIMRELAALAG 316
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESR-GKHLCSI 118
D V V Y RL+PL + L ++ GDC+V FS I+ +++ IE + GKH C+I
Sbjct: 317 DKVHVHEYARLTPLQVMPKSLNRQLEKLEKGDCVVAFSVLGIHAIRREIEKKTGKH-CAI 375
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
VYGSLPPETR +QA FND +++D LVASDAIGMGLNL I RIIF ++ K DG+ L
Sbjct: 376 VYGSLPPETRAQQAALFNDPDNDYDFLVASDAIGMGLNLAIKRIIFESLMKSDGLYYNPL 435
Query: 179 TVPEVKQIAGRAGRYGSKF--------------------------PVGEVTCLDSEDLPL 212
+ EVKQIAGRAGRY + VG VT + +D
Sbjct: 436 QISEVKQIAGRAGRYKTAHQAVTTDTQASDPTIALDDTPPFIEPKTVGWVTTFEKDDHER 495
Query: 213 LHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANC 270
L +++ +EP P + +AGLFP +I ++ P + + I+ E +L +
Sbjct: 496 LKRAMAMEPEP-IHTAGLFPPSLMIERFANYFPPRTPFSYIMLRLHEICQLHSRFHLCRL 554
Query: 271 EEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQLRE 326
+ L +A I + L E+ C +P +M +++ + A N +++L +
Sbjct: 555 RDQLDIADAIHPVKSLSTQERITLCNAPANMREELEKSFMRSLADCIANNRAAHLLELPD 614
Query: 327 IFTPGTLQVP-KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
+ P + + L ELE +HK+L Y+WLS+R R LA K IEE
Sbjct: 615 LPLQAMDAKPGQERKYLYELERLHKMLITYLWLSYRFPHIMVSRSLANHAKKQVEDRIEE 674
Query: 386 FLERLGWQK 394
L R + K
Sbjct: 675 TLARFTFVK 683
>gi|341894290|gb|EGT50225.1| hypothetical protein CAEBREN_30421 [Caenorhabditis brenneri]
Length = 742
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 216/379 (56%), Gaps = 25/379 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE----------------LHLCGDPAAVPLI 52
+ VIDEIQML + RG+++TRALLG A+E +HLCG+PAA+ ++
Sbjct: 272 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEVSINVVFHNRRFIQLQIHLCGEPAAIDIV 331
Query: 53 QQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRG 112
+++L+ G+ V+V+ YER SPL + + S+SNI+ GDCIV FS+ A++ K +E G
Sbjct: 332 KKLLEPIGETVEVRYYERKSPLAIGDKAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENG 391
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
+++YG LPP T+ QA +FND E +VLVA+DAIGMGLNLNI R+IF++ +
Sbjct: 392 IK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIKRVIFNSCTR--Q 448
Query: 173 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
EL L QIAGRAGR+G+ + G T + EDL L L E + + G+ P
Sbjct: 449 TEL--LPTYAALQIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKVDPIMNVGIAPT 506
Query: 233 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 292
+D I +S P +S +L+ F+ +S+++F ++ ++A +IDQ+PL L +Y
Sbjct: 507 YDQIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYT 566
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIH 349
FC SP++ +D ++ + A +S G + PK L E LE +
Sbjct: 567 FCTSPLNTDDKRTAAVFVKMARRFS-TGQALTYDWLIDMLEWPPKPATNLNELALLEQNY 625
Query: 350 KVLDLYVWLSFRLEESFPD 368
++LD Y+WLS R + PD
Sbjct: 626 EILDQYMWLSMRFPDMLPD 644
>gi|317035069|ref|XP_001401003.2| ATP-dependent RNA helicase SUV3 [Aspergillus niger CBS 513.88]
Length = 755
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 226/409 (55%), Gaps = 24/409 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ V+DEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TG
Sbjct: 271 MVSLGDQYEVGVVDEIQMIADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTG 330
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL N L G N+Q GDC+V+FSR I+ LK IE +IV
Sbjct: 331 DKLEIHRYERLNPLKVQNRSLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIV 390
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND +++D LVASDAIGMGLNL+ RIIF T+ K L+ L+
Sbjct: 391 YGSLPAEIRTQQASLFNDPDNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLS 450
Query: 180 VPEVKQIAGRAGRYGSKFP-------------VGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY S VG VT L+ DLP + +++ P L S
Sbjct: 451 VPEIKQIGGRAGRYRSAAQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVS 510
Query: 227 AGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P + + P + L +++ + +++ +F + L+ A VID +
Sbjct: 511 AGILPPDSVYQKVAAYFPSNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDG 570
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQA 340
LR ++ F SP+ F ++ +L +I L+ P +
Sbjct: 571 LRTADQLTFMASPMHTRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKE 630
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE++HK + LY+WLS+R F DR LA+ K L+EE + R
Sbjct: 631 YLNELETLHKSVILYLWLSYRCGGVFTDRTLASHVK----QLVEERMVR 675
>gi|295670045|ref|XP_002795570.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284655|gb|EEH40221.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 716
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 232/415 (55%), Gaps = 33/415 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D D VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 235 MVPLGQDVDVGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 294
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ +N+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 295 DRLEIHHYERLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIV 354
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L L+
Sbjct: 355 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLS 414
Query: 180 VPEVKQIAGRAGRY----------------GSKFPVGEVTCLDSEDLPLLHKSL-LEPSP 222
V ++KQI GRAGRY ++ VG VT L+ DL + K+L +P P
Sbjct: 415 VSQIKQIGGRAGRYRPASHVTETDSCIPGKDAETNVGFVTSLEDVDLSYIRKALSAKPEP 474
Query: 223 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE-NYFFANCEEVLKVATVID 281
+L SAGL P +I + P ++ + + L N L + N+F A+ + ++A ID
Sbjct: 475 IL-SAGLLPPDYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAID 533
Query: 282 QLP-LRLHEKYLFCISPVDMNDDISSQGLTQF----ATNYSKK----GIVQLREIFTPGT 332
+ L + +K +F +P M D S +F A N S G + L + P
Sbjct: 534 GIKGLGIDDKMVFLSAPAHMRDHQMSTIFREFVRCVAENKSGDILDIGDLPLDILDKP-- 591
Query: 333 LQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
V + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 592 --VSGDKTYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 644
>gi|134081681|emb|CAK46615.1| unnamed protein product [Aspergillus niger]
Length = 642
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 226/409 (55%), Gaps = 24/409 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ V+DEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TG
Sbjct: 158 MVSLGDQYEVGVVDEIQMIADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTG 217
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL N L G N+Q GDC+V+FSR I+ LK IE +IV
Sbjct: 218 DKLEIHRYERLNPLKVQNRSLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIV 277
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E RT+QA+ FND +++D LVASDAIGMGLNL+ RIIF T+ K L+ L+
Sbjct: 278 YGSLPAEIRTQQASLFNDPDNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLS 337
Query: 180 VPEVKQIAGRAGRYGSKFP-------------VGEVTCLDSEDLPLLHKSLLEPSPMLES 226
VPE+KQI GRAGRY S VG VT L+ DLP + +++ P L S
Sbjct: 338 VPEIKQIGGRAGRYRSAAQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVS 397
Query: 227 AGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 284
AG+ P + + P + L +++ + +++ +F + L+ A VID +
Sbjct: 398 AGILPPDSVYQKVAAYFPSNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDG 457
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVP--KTQA 340
LR ++ F SP+ F ++ +L +I L+ P +
Sbjct: 458 LRTADQLTFMASPMHTRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKE 517
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L ELE++HK + LY+WLS+R F DR LA+ K L+EE + R
Sbjct: 518 YLNELETLHKSVILYLWLSYRCGGVFTDRTLASHVK----QLVEERMVR 562
>gi|452839024|gb|EME40964.1| hypothetical protein DOTSEDRAFT_91028 [Dothistroma septosporum
NZE10]
Length = 986
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/439 (34%), Positives = 238/439 (54%), Gaps = 47/439 (10%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ VPLI+++ GD +++ Y
Sbjct: 322 EVAVIDEIQMIGNPERGWAWTQALLGVKAKEVHLCGEARTVPLIKELCASVGDKLEIHRY 381
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLSPL L G + ++ GDCIV+FS I+ L++ IE + VYGSLPPET
Sbjct: 382 ERLSPLQMAESSLDGDLTKLRKGDCIVSFSVMGIHALRRQIEKTTGRKVATVYGSLPPET 441
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA FND +++FD LVASDA+GMGLNL I RIIF T KFDG + R L + ++KQIA
Sbjct: 442 RAAQARLFNDPNNDFDYLVASDAVGMGLNLAIKRIIFETSSKFDGTQRRTLAIADIKQIA 501
Query: 188 GRAGRYGS-------------------------------KFP--VGEVTCLDSEDLPLLH 214
GRAGR+ + +FP VG VT ++ D P++
Sbjct: 502 GRAGRFRTAAQASDAPASEQDLTAAKGEIAAGPPSGKQGEFPENVGLVTTMERFDFPIVS 561
Query: 215 KSLL-EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEE 272
++ EP P ++SAGLFP ++ ++ P + + +L E +++ + +
Sbjct: 562 AAMQSEPEP-IQSAGLFPPASVLERFTSYFPPGTPFSYMLTRLHELSQMHTRFHLCGLRD 620
Query: 273 VLKVATVIDQLP-LRLHEKYLFCISPVDMND-DISSQGLTQFA---TNYSKKGIVQLREI 327
+ VA +I+ + L + ++ C SP D D+ L +A S + ++E+
Sbjct: 621 QIWVADLIEPVEGLTVADRNTICSSPASKADQDMWKHLLPAYARCIATQSGGNLFDIKEL 680
Query: 328 FTPGTL---QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIE 384
P + +V ++ LR LE +HK + Y+WLS+R+ F R LA K + IE
Sbjct: 681 --PLEILESEVSASREYLRGLERLHKGIVNYLWLSYRMAGIFNTRALAFHVKGLVEEKIE 738
Query: 385 EFLERLGWQKPRVKKVTPR 403
+ L ++ + + ++V +
Sbjct: 739 DVLSKVSFSETARRQVAAK 757
>gi|50293791|ref|XP_449307.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528620|emb|CAG62281.1| unnamed protein product [Candida glabrata]
Length = 724
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 238/421 (56%), Gaps = 19/421 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++D V+DEIQM+ RG+++T ALLG A E+H CG+ + +PLI++I+++TG
Sbjct: 304 MIPLNQNFDVVVLDEIQMMADLDRGWAWTNALLGAKAKEVHCCGEASTIPLIKKIVEMTG 363
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YER+ LV L + +++ GDC+V FS+ AI LK IE + + +++
Sbjct: 364 DKLTINEYERMGKLVVEEEALTKGYHSLKKGDCVVAFSKKAILDLKLEIEKKTELKAAVI 423
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S EFD+L+ASDAIGMGLNL+I R++F+T KKFDG ++ D+T
Sbjct: 424 YGSLPPETRVKQANLFN--SGEFDILIASDAIGMGLNLSIDRVVFTTSKKFDGRDMVDMT 481
Query: 180 VPEVKQIAGRAGRY------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
+KQI GRAGR+ + PVG +T + L + +++ P L SA +P
Sbjct: 482 SSAIKQIGGRAGRFKQNIHDNGELPVGYITAVKPNVLKAVREAINAPIEYLTSATTWPTD 541
Query: 234 DL-IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT--VIDQLP-LRLHE 289
++ ++ +R P ++ +LE + + S N F C+ +++ +ID + + +
Sbjct: 542 EICTHVMTRFMPGTTCKTLLETIAADIEQSSNKLFQICDLKARMSAIEIIDSMEDITFSD 601
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSK---KGIVQLREIFTPGTLQVPKTQA-ALREL 345
K +P+ + + +F ++ +G++ R F L+ T+ L E
Sbjct: 602 KLRLSNAPLK-DFPLVKAAFKKFCDTIARGHTRGLLSYRFPFDILNLKYIYTEKHGLEEY 660
Query: 346 ESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
E+++ ++ L+ WLS R F D+E A+ K C M+I E ++ L + P ++K P
Sbjct: 661 EALYNIIMLFFWLSNRYPNYFIDQESASELKNFCEMIIFEKIDHLK-RNPYIRKKFISPY 719
Query: 406 L 406
L
Sbjct: 720 L 720
>gi|169866863|ref|XP_001840016.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
gi|116498902|gb|EAU81797.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
Length = 846
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 219/407 (53%), Gaps = 31/407 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AV+DEIQM+ RG +T A+LG+ A E+HLCG+ AVP+++ +L+ TGD++ V+
Sbjct: 390 YDVAVVDEIQMITDPQRGSGWTNAVLGLAAKEVHLCGEETAVPIVEALLKDTGDELIVKR 449
Query: 68 YERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERL+PL LG +S +Q GDCIV F+R I+ +KK +E+ C++VYG LPPE
Sbjct: 450 YERLTPLKVEEESLGGDYSKVQKGDCIVVFNRKGIFAVKKKVEALTGLRCAVVYGRLPPE 509
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R+ QA+ FND S +DVL+ SDAIGMGLNL I R+IF ++KKF L++ +VKQI
Sbjct: 510 IRSEQASLFNDPDSGYDVLIGSDAIGMGLNLKIRRVIFDSVKKFSAGGESLLSISQVKQI 569
Query: 187 AGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFDLIYMYSRLHP 244
AGRAGR+G + P G T L EDLP L +++ P P+ + F + S L P
Sbjct: 570 AGRAGRFGLHEEPGGYATTLHEEDLPYLREAVGSPFIPLPFARITFDANTFSNLLSVLPP 629
Query: 245 DSSLYGILEHFLENAKLSENYFFANCE-EVLKVATVIDQLP--LRLHEKYLFCISPVDMN 301
+SS ++ +L + + + E+ ID+ L E+ L +PV
Sbjct: 630 NSSTSTVILAHHYAGRLPPKVRYQDTDFELTSTFNFIDEFSDTLTARERVLHLNAPVTWR 689
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ-------------------VPKTQ-AA 341
D ++ + F K V L P L+ +P++
Sbjct: 690 DPLTVAMVRTFLEQARDKMYVDL-----PAALKTTRFMDIMEGIEKEMKNESIPRSNLRD 744
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
L LES HK L LY+W+SFR +P +LA KA ++E LE
Sbjct: 745 LSTLESFHKSLVLYIWMSFRAPILYPQFQLATELKARLERVLEWSLE 791
>gi|169611102|ref|XP_001798969.1| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
gi|160702221|gb|EAT83828.2| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
Length = 1055
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 225/429 (52%), Gaps = 43/429 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + S +D AVIDEIQM+ K RG+++T+A LG+ A E+HLCG+ VPL++++ + G
Sbjct: 268 MAPLNSRFDVAVIDEIQMISHKERGWAWTQAFLGLPAKEIHLCGEARTVPLMRELCALVG 327
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V V YERL+PL V G N+Q GDCIV F+ I+ L+K IE R C+IV
Sbjct: 328 DKVHVHEYERLTPLQVEPRSMGGKLDNLQKGDCIVAFTVVGIHALRKDIERRTGKKCAIV 387
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +++D LVASDAIGMGLNL I R+IF + K +GV L
Sbjct: 388 YGSLPPETRAQQARLFNDPDNDYDFLVASDAIGMGLNLAIRRVIFESTVKSNGVNYVPLE 447
Query: 180 VPEVKQIAGRAGRYGS------------------------------KFP----VGEVTCL 205
+ E+KQIAGRAGRY + K P +G VT L
Sbjct: 448 ISEIKQIAGRAGRYKTAHQAVNVDTQKSIADAAVDPAIGLDDKPQPKEPETKTIGWVTTL 507
Query: 206 DSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSE 263
D D L + EP P + +AGLFP ++ ++ P + + I+ E +++
Sbjct: 508 DEVDHAHLKAGMRREPDP-ITTAGLFPPSLIVERFANYFPPGTPFSYIMLRLHEISEIHP 566
Query: 264 NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 322
+ ++ L +A I + L + ++ C +P++M + L A +
Sbjct: 567 RFHLCGLKDQLAIADTIHLVKNLSIQDRIQICAAPINMRNAPERAFLRSLAECIADNKSG 626
Query: 323 QLREIFTPGTLQVPKTQAALR----ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
L +I T + + R ELE++HK+L Y+WLS+R + F R LA K +
Sbjct: 627 SLLDIPTLPLAVMDAEPSGKRLYLVELENLHKMLVAYLWLSYRFPQVFVTRSLANYTKKL 686
Query: 379 CSMLIEEFL 387
IE+ L
Sbjct: 687 VEDQIEKTL 695
>gi|45200857|ref|NP_986427.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|44985555|gb|AAS54251.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|374109672|gb|AEY98577.1| FAGL240Wp [Ashbya gossypii FDAG1]
Length = 708
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 225/408 (55%), Gaps = 25/408 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DEIQML + RG+++T ALLG+ A+ELHLCG+P+ +P IQ+++ +TGD + +
Sbjct: 304 FDMVVLDEIQMLADEQRGWAWTNALLGVQASELHLCGEPSVLPFIQRLVAMTGDKLVINE 363
Query: 68 YERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RL L + PL F ++ GDC+V+FS+ LK IE K +++YGSLPPE
Sbjct: 364 YQRLGKLEVESKPLPERFHGLKKGDCLVSFSKRKTLDLKLQIERAKKCKVAVIYGSLPPE 423
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR QAT FN E D+LVASDAIGMGLNL+I R+IF++ K++G EL LT + KQI
Sbjct: 424 TRVHQATMFN--RGEADILVASDAIGMGLNLSIKRVIFTSAMKWNGAELIPLTDSQTKQI 481
Query: 187 AGRAGRY--------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF-PNFDLIY 237
AGRAGRY + VG+VT LD E L ++ S+ P + SA L+ P+ L
Sbjct: 482 AGRAGRYKVAGESDDAAGGSVGKVTALDMETLEMIQNSMKAPVKYIPSAVLWPPDRILAQ 541
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLP-LRLHEKYLFC 294
+ ++ P + +LEHF + K + + F N E ++V +I+ + L L + +
Sbjct: 542 ILTKYPPGMKITTLLEHFDRDIKSNPDSLFILPNIESRIEVMNLIEGMDGLSLED--MMT 599
Query: 295 ISPVDMND-DISSQGLTQFATNYSKKGIVQLREIFTP----GTLQVPKTQAALRELESIH 349
+S + D I + F +KK + + P V L E +H
Sbjct: 600 LSNAPLRDLPIPKKAFINFCETVAKKETRSIFDFKIPLNFLNAKAVTDEDLKLDLYEELH 659
Query: 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE---FLERLGWQK 394
VL LY+WL R + F D E S K C +I E FL+R ++K
Sbjct: 660 HVLTLYMWLQIRYPDYFVDLESVKSLKHHCEYIIFEKLKFLKRNPYKK 707
>gi|347839231|emb|CCD53803.1| hypothetical protein [Botryotinia fuckeliana]
Length = 840
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 237/448 (52%), Gaps = 51/448 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + S D AVIDEIQM+G + RG+++T+A+LG+ A E+HLCG+ LI+++ + G
Sbjct: 298 MVPLNSKVDVAVIDEIQMIGDEERGWAWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMG 357
Query: 61 DDVKVQSYERLSPLVPLNVPLGS---------------FSNIQTGDCIVTFSRHAIYRLK 105
D + + +YERL L + L S S ++ GD ++ FSR I+ +K
Sbjct: 358 DKLIIHNYERLGKLQVMAKSLTSRHSERDGPSGKESTPVSKLEKGDAVILFSRMRIHAMK 417
Query: 106 KAIES--RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 163
AIE+ RGK C+IVYGSLPPETR +QA FND +++D LVAS+A+GMGLNL+I R+I
Sbjct: 418 NAIEAHHRGKR-CAIVYGSLPPETRAQQAALFNDPDNDYDFLVASNAVGMGLNLSIKRVI 476
Query: 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---------------------SKFPVGEV 202
++K+ +G + L + E+KQIAGRAGRY ++ PVG V
Sbjct: 477 LESVKRHNGTDFMTLPISEIKQIAGRAGRYKTARDAIEAGPIDVADGIPTKPTEPPVGLV 536
Query: 203 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKL 261
T D +L ++ + + + +AG+FP ++I ++ P S+ + ++ E L
Sbjct: 537 TTFFKTDHEILSSAMSKEAAQMTTAGIFPPANVIERFAEYFPKSTPFSYVILRLHELGSL 596
Query: 262 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA---TNYSK 318
S + +E +A +I + L + + +F +PV + D + FA +N +
Sbjct: 597 SSEFHLCQLKEQAAIADIIQEFDLTIRNRLIFLAAPVSLRDPGVVNVVKAFARCVSNNTG 656
Query: 319 KGIVQLREIFTPGTLQVPKT-------QAALRELESIHKVLDLYVWLSFRLEESFPDREL 371
I+ + E+ + P T + +R +E +HK + LY+WLS+R F + L
Sbjct: 657 GHILNISELSLELLDEDPDTFTRQNEREMYVRSIERLHKNITLYLWLSYRFTGVFHSQAL 716
Query: 372 AASQKAICSMLIEEFLERLGWQ-KPRVK 398
A K + I+ L + WQ K R+K
Sbjct: 717 AFHIKGLVEEKIDLCLAKAEWQEKARIK 744
>gi|406868649|gb|EKD21686.1| hypothetical protein MBM_00799 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1001
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 229/430 (53%), Gaps = 37/430 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+A LG+ A E+HLCG+ +I + GD + V Y
Sbjct: 391 DVAVIDEIQMMGDDERGWAWTQAFLGVMAKEVHLCGETRTREIITDLCAAMGDKLVVHEY 450
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLSPL + L G N++ GD I+ FSR AI+ +K+ +E ++VYGSLPPET
Sbjct: 451 ERLSPLKTQDHSLNGDLRNLEKGDAIILFSRVAIHAMKQDVERITGKRAAVVYGSLPPET 510
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND ++++D LVASDA+GMGLNL+I R+IF T K DGV R + E+KQIA
Sbjct: 511 RAQQAALFNDPNNDYDYLVASDAVGMGLNLSIKRVIFETTSKHDGVAHRIIKNHEIKQIA 570
Query: 188 GRAGRYGS------------------------KFPV---GEVTCLDSEDLPLLHKSLLEP 220
GRAGR+ + K P G VT L++ DLP++ +++
Sbjct: 571 GRAGRFKTAQQAIDKGKDGDEQVVDPLQLDTVKKPSPAGGMVTTLENFDLPIVRRAMRAS 630
Query: 221 SPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATV 279
P L SAG+FP D++ ++ P + + I+ + A L ++ ++ +K+A
Sbjct: 631 VPPLASAGIFPPGDILLRFANYFPPKTPFSYIILRLHDMASLGSHFHLCRLKDQIKIADA 690
Query: 280 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK-- 337
I + L ++ +P+ M D S + + A +++ L ++ P + +
Sbjct: 691 IQEFDLSNMDRISLMSAPMSMRDHGSIDFIKELANCIAEQKNGALLDLQVPDLELLDRDI 750
Query: 338 ------TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLG 391
++ L++ E +H+ L LY+WLS+R F + LA K + I E L +
Sbjct: 751 HDHANGSKGYLKDAEMLHRQLTLYLWLSYRFAGVFISQALAFHVKGLIEEKINECLSTVL 810
Query: 392 WQKPRVKKVT 401
+ + +K+T
Sbjct: 811 MDEAQRRKLT 820
>gi|448089344|ref|XP_004196783.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|448093613|ref|XP_004197814.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359378205|emb|CCE84464.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359379236|emb|CCE83433.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
Length = 739
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 156/420 (37%), Positives = 228/420 (54%), Gaps = 33/420 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +IDEIQM+ RG ++T A+LG+ A E+H+CG+ +AV LI ++ ++TGD++++ Y
Sbjct: 311 DICIIDEIQMIADTRRGEAWTNAVLGVQAREIHMCGEESAVSLISKLAEMTGDEIEIHRY 370
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L +N P+ S N+ GDC++ FS+ I LK IE ++YG+LPPE R
Sbjct: 371 KRLGKLSLMNKPINSLGNLMKGDCVIAFSKRKILELKCEIEKTTNLKVGVIYGALPPEIR 430
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A FN ++DVLVASDA+GMGLNL I RI+F KKF+G E LT+ EVKQIAG
Sbjct: 431 SKEAYSFN--VGDYDVLVASDAVGMGLNLKIKRIVFFATKKFNGSETIPLTISEVKQIAG 488
Query: 189 RAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRLHPD 245
RAGRY G VT + DL L K + +P L+ A ++P N Y S+
Sbjct: 489 RAGRYSEIEGESEGFVTAIYKRDLDYLKKVMNKPISDLKKACVWPTNKVWTYYMSKFPKH 548
Query: 246 SSLYGILEHF-LENAKL-SENYFFANCE---EVLKV---------ATVIDQLPLRLHEKY 291
+S Y IL F EN L +NYF + + E+LK+ T+ DQL L L
Sbjct: 549 TSFYSILSSFEKENDNLVMDNYFLTSLDARYEILKLFLRNDLYKRTTIDDQLRLSLAPIN 608
Query: 292 LFCISPVDMNDDIS-SQGLTQ------FATNYSKKGIVQLREIFTPGTLQVPKTQAALRE 344
+ SP+ + S + +T+ F + I++ R FT V +T L+
Sbjct: 609 ISVASPLVVKTTFSFFENITERKTKNIFDFKFLHTTILKSRPKFTA---TVDETVQCLQY 665
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRP 404
LE HK++ +++WLS R F D+E A K + I E L L R+ K + +P
Sbjct: 666 LEENHKIILMFLWLSQRWPTLFVDKESATEMKTLIEKRISEELLNL----RRLTKTSRKP 721
>gi|367006372|ref|XP_003687917.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
gi|357526223|emb|CCE65483.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
Length = 739
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 226/406 (55%), Gaps = 21/406 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQML RG+++T ALLG+ A E+HLCG+ +A+P+I++I++ TG
Sbjct: 314 MVSMSKTFDVVVLDEIQMLADNDRGWAWTNALLGVKAKEVHLCGEKSALPVIKKIVESTG 373
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V Y+RL L+ P+ + F ++ GDC++ FS+ I LK +E K ++
Sbjct: 374 DNLIVHEYDRLGNLIVEKSPMNNDFKGLRKGDCVIAFSKKKILDLKLTVERETKLKVGVI 433
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+DVLVASDA+GMGLNL I R+IF+T KF+G EL++LT
Sbjct: 434 YGSLPPETRVQQARLFNNG--EYDVLVASDAVGMGLNLAIDRVIFTTDLKFNGKELQELT 491
Query: 180 VPEVKQIAGRAGRY-----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
+KQI GRAGRY ++ +G+VT + L + K + P +ESA ++P +
Sbjct: 492 SSNIKQIGGRAGRYKHNDSSNEVAIGKVTSFHGDVLTTIRKGMEAPIEYIESATIWPTDE 551
Query: 235 L-IYMYSRLHPDSSLYGILEHF-LENAKLSENYF----FANCEEVLKVATVIDQLPLRLH 288
+ I + +R P +SL ILE L+ A+ S N + N +K+ ++ +P
Sbjct: 552 ICIRLMTRFAPSTSLSDILELIALQLAQNSNNLYKLSELRNKLTAIKIFEDMEDIPFV-- 609
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALRE 344
EK +P+ + + + F K+ L P + +P+ + L
Sbjct: 610 EKLKLSNAPIK-DVPLVKKAFAYFCETIGKRQTKTLLSYDLPFDIVKYSCIPQEKYNLEM 668
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
E+++ ++ L+ WL R F D E A + ++I E L+RL
Sbjct: 669 YEALYNIVTLFCWLGNRYPNYFVDLEAAKRLRITIELIIFEKLDRL 714
>gi|336369621|gb|EGN97962.1| hypothetical protein SERLA73DRAFT_91128 [Serpula lacrymans var.
lacrymans S7.3]
Length = 509
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 174/265 (65%), Gaps = 5/265 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AV+DEIQM+G RGF++T A+LG+ A E+HLCG+ AVPL++ +L+ T DD+ V
Sbjct: 82 YDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEETAVPLVEAMLRETNDDLVVNR 141
Query: 68 YERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERL+PL LG + S I+ GDCIVTFSR +I+++K+ +E C+ VYG LPPE
Sbjct: 142 YERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMKRDVEKTMGVTCATVYGRLPPE 201
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R+ QA FNDA++ FD+L+ SDAIGMGLNL I RII + ++K+ ++ L++ KQI
Sbjct: 202 VRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIAQVRKYHDNHVQYLSISSTKQI 261
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRL 242
AGRAGR+ G + PVG T L+ EDLP L +++ P P L++A + P N L+ S L
Sbjct: 262 AGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIPSLKTARITPSNPSLVATASAL 321
Query: 243 HPDSSLYGILEHFLENAKLSENYFF 267
P S++ I +KL+ Y +
Sbjct: 322 PPHSAMNTIFLAHAYTSKLAPTYRY 346
>gi|451856523|gb|EMD69814.1| hypothetical protein COCSADRAFT_32486 [Cochliobolus sativus ND90Pr]
Length = 753
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 229/450 (50%), Gaps = 47/450 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + +D AVIDEIQM+ RG+++T+A LG+ A E+HLCG+ VPL++++ + G
Sbjct: 256 MAPLNTHFDVAVIDEIQMISHPERGWAWTQAFLGLQAREIHLCGEARTVPLMRELCALVG 315
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V Y RL+PL V G + +Q GDCIV F+ I+ L++ IE + C+IV
Sbjct: 316 DKIHVHEYNRLTPLKVEPKSLGGKLNKLQKGDCIVAFTVLGIHALRREIERKTGKKCAIV 375
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +E+D LVASDAIGMGLNL I R+IF + K DG+ L
Sbjct: 376 YGSLPPETRAQQARLFNDPDNEYDYLVASDAIGMGLNLAIKRVIFESTMKTDGINYHSLQ 435
Query: 180 VPEVKQIAGRAGRYGS-----------------------------------KFP----VG 200
+ ++KQIAGRAGRY + K P VG
Sbjct: 436 ISDLKQIAGRAGRYKTAHQAVNADSKQVSVADGVIDPVIGLDDKHSNADEIKAPESKTVG 495
Query: 201 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENA 259
VT L+ ED L + + +++AGLFP ++ ++ P + + I+ + +
Sbjct: 496 WVTTLEHEDHKYLKSGMAKEPEEIKAAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDIS 555
Query: 260 KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFAT--NY 316
+ ++ ++ L +A VI + L + ++ C +P++M L + A
Sbjct: 556 NIHPRFYLCTLKDQLAIADVIHTVKNLGIQDRITVCAAPINMRSAPERNFLRRLAECIAE 615
Query: 317 SKKGIVQLREIFTPGTLQVPKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAAS 374
K G + E + P + + L LE +HK++ Y+WLS+R F R LA
Sbjct: 616 GKSGNLLDIECLPLNIMDQPSSGDREYLYRLEQLHKMIVCYLWLSYRFPNVFTTRTLANY 675
Query: 375 QKAICSMLIEEFLERLGW-QKPRVKKVTPR 403
K + IE L + ++ R+K+ R
Sbjct: 676 TKKLVEDQIENTLSEFSFTEQVRLKQKKSR 705
>gi|348509637|ref|XP_003442354.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oreochromis niloticus]
Length = 553
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 181/265 (68%), Gaps = 6/265 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ +RG+++TRALLG+CA E+H+CG+PAA+ I++++ TG
Sbjct: 281 MCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGEPAAIDFIKELMFTTG 340
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P L+ + S N++ GDCIV FS++ IY + + IE+RG+ C+++Y
Sbjct: 341 EEVEVHNYQRLTPFSILDHAVESLDNLRPGDCIVCFSKNDIYSISRQIEARGQE-CAVIY 399
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-----L 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K + E +
Sbjct: 400 GSLPPGTKLSQAKKFNDPDDPCKILVATDAIGMGLNLSIKRIIFNSLVKPNVNEKGEKQM 459
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ SKF GEVT + +DLP+L + L +E+AGL P +
Sbjct: 460 ETISTSQALQIAGRAGRFSSKFKEGEVTTMHRDDLPVLKEILSHSVDPIETAGLHPTAEQ 519
Query: 236 IYMYSRLHPDSSLYGILEHFLENAK 260
I M++ PD++L ++ +NA+
Sbjct: 520 IEMFAYHLPDATLSNLVLWTAKNAR 544
>gi|407918858|gb|EKG12120.1| Helicase [Macrophomina phaseolina MS6]
Length = 775
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 227/438 (51%), Gaps = 56/438 (12%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+G RG+++T+A+LG+ A ELHLCG+ VPLI+++ GD+V+V +Y
Sbjct: 190 DVCVIDEIQMIGDLDRGWAWTQAVLGVQAKELHLCGEARTVPLIRELAATMGDEVEVNTY 249
Query: 69 ERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERL+ L +G F N++ GDCIV FS I+ L++ I + +IVYGSLPPET
Sbjct: 250 ERLTSLEMDTRHIGYDFKNLRKGDCIVAFSIMEIHALRQTIMKQTGKKVAIVYGSLPPET 309
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA FND +S +D+LVASDAIGMGLNL++ RIIF+++ KF+G E L++P +KQIA
Sbjct: 310 RAHQARLFNDPNSGYDILVASDAIGMGLNLSVKRIIFASIHKFNGFEHVTLSIPHLKQIA 369
Query: 188 GRAGRYGSKFPV------------------------------------------------ 199
GRAGRY +
Sbjct: 370 GRAGRYKTAHEANKEAEKAPQNADAVDASGTILDDFASEQQSDAPNSETEQFEFAEPPPG 429
Query: 200 -GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLE 257
G VT L+ + + K+L + +++AGLFP +I ++ P + + +L +
Sbjct: 430 GGLVTTLEKAHMRYVSKALKDEPEAIKTAGLFPPDPIIERFANYFPPGTPFSYVLLRLHD 489
Query: 258 NAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNY 316
+++ + + ++ L +A I + L + ++ FC +P ++ D + L A
Sbjct: 490 ISRVHKRFHICVLKDQLSIADTIQAVDGLSVLDRITFCAAPANLKTDKDREVLLNLAKCV 549
Query: 317 SKKGIVQLREI--FTPGTLQVP--KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELA 372
+++ L +I F L P + L +LES+HK + LY+WLS+R F R LA
Sbjct: 550 AEQKNGNLLDIEGFDWTLLDRPISANREYLHKLESLHKAIVLYLWLSYRFSGVFATRALA 609
Query: 373 ASQKAICSMLIEEFLERL 390
K + IE L L
Sbjct: 610 FHAKTLVEQAIEATLNEL 627
>gi|452002983|gb|EMD95440.1| hypothetical protein COCHEDRAFT_1126086 [Cochliobolus
heterostrophus C5]
Length = 794
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 233/451 (51%), Gaps = 49/451 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + +D AVIDEIQM+ RG+++T+A LG+ A E+HLCG+ VPL++++ + G
Sbjct: 256 MAPLNTHFDVAVIDEIQMISHPERGWAWTQAFLGLQAREIHLCGEARTVPLMRELCALVG 315
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V Y RL+PL V G +N+Q GDCIV F+ I+ L++ IE + C+IV
Sbjct: 316 DKIHVHEYNRLTPLKVEPKSLGGKLNNLQKGDCIVAFTVLGIHALRREIERKTGRKCAIV 375
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +E+D LVASDAIGMGLNL I R+IF + K DGV+ L
Sbjct: 376 YGSLPPETRAQQARLFNDPDNEYDYLVASDAIGMGLNLAIKRVIFESTMKTDGVKYASLQ 435
Query: 180 VPEVKQIAGRAGRYGS-----------------------------------KFP----VG 200
+ ++KQIAGRAGRY + K P VG
Sbjct: 436 ISDLKQIAGRAGRYKTAHQAVNADSKQVSVANGAIDPVIGLDDKHSDADEIKAPESKTVG 495
Query: 201 EVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLEN 258
VT L+ ED L KS +E P +++AGLFP ++ ++ P + + I+ +
Sbjct: 496 WVTTLEHEDHKYL-KSGMEKEPEEIKAAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDI 554
Query: 259 AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFAT--N 315
+ + ++ ++ L +A I + L + ++ C +P++M L +
Sbjct: 555 SNIHPRFYLCTLKDQLAIADAIHTVKNLSVQDRITICAAPINMRSAPERNFLRRLTECIA 614
Query: 316 YSKKGIVQLREIFTPGTLQVPKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAA 373
K G + E + P + + L +LE +HK++ Y+WLS+R F R LA
Sbjct: 615 EGKSGNLLDIECLPLDIMDQPSSGDREYLYKLEQLHKMIVCYLWLSYRFPNVFTTRALAN 674
Query: 374 SQKAICSMLIEEFLERLGW-QKPRVKKVTPR 403
K + IE L + ++ R+K+ R
Sbjct: 675 YTKKLVEDQIENTLSEFSFTEQVRLKQKKSR 705
>gi|328864082|gb|EGG13181.1| hypothetical protein MELLADRAFT_32543 [Melampsora larici-populina
98AG31]
Length = 609
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 209/391 (53%), Gaps = 32/391 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDEIQM+G RG ++T+A+LG A ELHLCG+ + + LI+++ GD+ +
Sbjct: 158 YDVVVIDEIQMIGDIYRGDAWTQAVLGTQAKELHLCGEESVIELIRKLSIDCGDEFILHE 217
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RL+PL L G S IQ GDC+VTFSR+ IY +KK IE + + YG LPPE
Sbjct: 218 YQRLTPLKVSEQSLKGDLSQIQKGDCVVTFSRNNIYAIKKLIEEQTDLRVGMAYGGLPPE 277
Query: 127 TRTRQATRFN-----DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
R R+A FN + +DVLV SDAIGMGLNL I R+IF + KFDG L+
Sbjct: 278 VREREARMFNLGSEIEGEGGYDVLVGSDAIGMGLNLKIKRVIFEALYKFDGQREVTLSTS 337
Query: 182 EVKQIAGRAGRYG---SKFP---------------VGEVTCLDSEDLPLLHKSLLEPSPM 223
++KQI GRAGR+G +K VGEV L ++PLL K ++ P
Sbjct: 338 QIKQIGGRAGRFGILPTKVKSESNQSSEGEPITQCVGEVATLQESEMPLLRKCMVAPFEP 397
Query: 224 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQ 282
+ A + F+ + +R+ P + L + ++ F + +A +++
Sbjct: 398 ITQAVIKAPFETVQGLARMVPPGVRFSTLLNLRRTLTVTSPIFAIGDENNAAGIADLLED 457
Query: 283 LP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP------GTLQV 335
+ L L E+ LFC +P + ++ L +AT +SK+ + L EI T +
Sbjct: 458 ITNLSLAERDLFCSAPASSRNPVAMTALRSWATAHSKRKLGNLSEIKTEPINEKKSKSKE 517
Query: 336 PKTQAALRELESIHKVLDLYVWLSFRLEESF 366
Q +L LES+HK L LY+WL FRL E+F
Sbjct: 518 KLDQQSLFRLESLHKCLVLYLWLGFRLPETF 548
>gi|156846264|ref|XP_001646020.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
gi|156116691|gb|EDO18162.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 226/409 (55%), Gaps = 25/409 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQML RG+++T A+LG A+E+HLCG+ + +PLI++I+ +TG
Sbjct: 306 MVPLNRQFDVLVLDEIQMLADPERGWAWTNAVLGARAHEIHLCGEKSVLPLIKKIVDITG 365
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V Y+RL L + +V +++ GDC+V FS+ I LK IE + KH +++
Sbjct: 366 DNLIVNEYDRLGKLEIESDVLSRGLRSLRRGDCVVAFSKKTILDLKLKIEKQTKHKVAVI 425
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S E+DVLVASDAIGMGLNL+I RIIF+T KF+G E+ L+
Sbjct: 426 YGSLPPETRLQQANLFN--SGEYDVLVASDAIGMGLNLSIDRIIFTTDTKFNGREMISLS 483
Query: 180 VPEVKQIAGRAGRY-------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
VKQIAGRAGR+ VG VT D E L + + L +P +ESA ++P
Sbjct: 484 SSNVKQIAGRAGRFKQENNGKNGNSTVGYVTSFDKEVLKSVKRGLEQPIEYIESAVIWPT 543
Query: 233 FDL-IYMYSRLHPDSSLYGILEHFLENAKLSENYFFA-----NCEEVLKVATVIDQLPLR 286
++ + ++L P + L +L + K S N F N +++V +D +P
Sbjct: 544 DEINTQILNKLPPKTELSELLIEISKELKKSSNNMFMLTDLRNRLNLIEVFKEVDGIP-- 601
Query: 287 LHEKYLFCISPVDMND-DISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAA 341
L++K +P M D + QF + + + P L + +
Sbjct: 602 LNDKLKLSNAP--MKDLPLVRLAFKQFCETIANRKTKTILSYNLPFELLDFDCIYDDKYG 659
Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L ES++ ++ L++WLS R F D E A K C ++I E L+RL
Sbjct: 660 LDMYESLYNIITLFLWLSNRYPNFFVDLESAKDLKIFCELIIYEKLDRL 708
>gi|330932356|ref|XP_003303742.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
gi|311320053|gb|EFQ88169.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
Length = 766
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 236/447 (52%), Gaps = 48/447 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + +D AVIDEIQM+ + RG+++T+A LG+ A E+HLCG+ VP+++++ + G
Sbjct: 260 MAPLNTLFDVAVIDEIQMISHEDRGWAWTQAFLGLKAREIHLCGEARTVPIMRELCALVG 319
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D V V Y RL+PL P++ L G ++ GDCIV+FS I+ L++ IE + C+IV
Sbjct: 320 DKVHVHEYNRLTPLQPMDRSLNGKLELLEKGDCIVSFSVLGIHALRRLIERKTGKKCAIV 379
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND +++D LVASDAIGMGLNL I R+IF + K +G +++ L
Sbjct: 380 YGSLPPETRAQQARLFNDPDNDYDYLVASDAIGMGLNLAIKRVIFESTAKSNGEQIKRLQ 439
Query: 180 VPEVKQIAGRAGRYGS---------------------------KFP------------VG 200
+ E+KQIAGRAGRY + K P +G
Sbjct: 440 ISEIKQIAGRAGRYKTAHQAITKDSEKASVADTTIDPVIGLDDKQPDTEKAVQAEPQTIG 499
Query: 201 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-A 259
T L+ EDL L + ++ SAG+FP ++ ++ P + + + L+ +
Sbjct: 500 WATTLEREDLASLKFGMKSEPEVITSAGIFPPSVIVERFASYFPPGTPFSYIMMRLQTIS 559
Query: 260 KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFAT---N 315
+++ + ++ L +A + + L + ++ C +PV ++ L + AT +
Sbjct: 560 EINPRFHLCALKDQLAIADNLHLVENLSIQDRITLCAAPVSARKANETKFLKELATCIAD 619
Query: 316 YSKKGIVQLREIFTPGTLQVP--KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAA 373
GI+ L+ + + P + LR LE +HK++ Y+WLS+R R LA
Sbjct: 620 GKPGGILDLKTLPL-NVMDAPLANNREYLRSLEDLHKMIVCYLWLSYRFPNVLTTRSLAN 678
Query: 374 SQKAICSMLIEEFLERLGWQKPRVKKV 400
K + IE+ L + + + +++
Sbjct: 679 YTKKLVEDKIEDTLTQFSFTEQSRQRI 705
>gi|336382398|gb|EGO23548.1| hypothetical protein SERLADRAFT_415998 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1368
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 174/265 (65%), Gaps = 5/265 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AV+DEIQM+G RGF++T A+LG+ A E+HLCG+ AVPL++ +L+ T DD+ V
Sbjct: 941 YDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEETAVPLVEAMLRETNDDLVVNR 1000
Query: 68 YERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERL+PL LG + S I+ GDCIVTFSR +I+++K+ +E C+ VYG LPPE
Sbjct: 1001 YERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMKRDVEKTMGVTCATVYGRLPPE 1060
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R+ QA FNDA++ FD+L+ SDAIGMGLNL I RII + ++K+ ++ L++ KQI
Sbjct: 1061 VRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIAQVRKYHDNHVQYLSISSTKQI 1120
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRL 242
AGRAGR+ G + PVG T L+ EDLP L +++ P P L++A + P N L+ S L
Sbjct: 1121 AGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIPSLKTARITPSNPSLVATASAL 1180
Query: 243 HPDSSLYGILEHFLENAKLSENYFF 267
P S++ I +KL+ Y +
Sbjct: 1181 PPHSAMNTIFLAHAYTSKLAPTYRY 1205
>gi|164662192|ref|XP_001732218.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
gi|159106120|gb|EDP45004.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
Length = 587
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 233/449 (51%), Gaps = 63/449 (14%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MADV Y+ AVIDEIQM+ RGF++T+A+LG+ A ELHLCG+ +AVPLIQ+++++ G
Sbjct: 109 MADVTRAYEVAVIDEIQMIADIQRGFAWTQAVLGLPAKELHLCGEASAVPLIQRLVEMCG 168
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ + +Y RLSPL + L G + ++ GDC+V FSR I+ LK+ IE+R C++
Sbjct: 169 DELHIHNYNRLSPLHVASSSLRGDLTKVEPGDCVVAFSRSTIFWLKEQIEARTGLQCAVA 228
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPE ++ QA FN S + DV+VASDAIGMGLNL I R+IF T+ K++G E L+
Sbjct: 229 YGALPPEIKSEQAKLFN--SGKLDVMVASDAIGMGLNLRIRRVIFDTLSKWNGKEQVPLS 286
Query: 180 VPEVKQIAGRAGRYGS-----KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
+ ++KQIAGRAGRYG+ + P G V + ++ L +L P + A + P+
Sbjct: 287 LSQIKQIAGRAGRYGTSRDKNEEPSGLVLTRNENEMEYLRAALAAPVRPITHAQIQPSTR 346
Query: 235 LIYMYSRLHP-----------------DSSLYGILEHFLENAKLSENYF-FANCEEVLKV 276
+ + L P D+S+ +LE F A L F A+ +
Sbjct: 347 KLESLALLLPRARTRGPSSSRRRVSIHDNSVSTLLEEFHAFADLDAGVFSMADFVSQKAM 406
Query: 277 ATVIDQLP---LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP-GT 332
+T+I+ L EK + +PV+M D+ + + Y++ +V+ GT
Sbjct: 407 STIIEHRGRDRLTHAEKEKWSNTPVNMRDERAVAWVGNAIERYARGELVRFEACAKELGT 466
Query: 333 LQVPKTQAALRE---------------------------------LESIHKVLDLYVWLS 359
++ + A + LES+H+ L LY+WL
Sbjct: 467 MEAEEAIAQIMRDAQTRHKVAGSEQSVVMFAQQDETVLNIHTLMLLESLHRTLTLYLWLG 526
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLE 388
FR +F R ++K IE LE
Sbjct: 527 FRFPLAFCFRHDVEARKQRTEASIEFCLE 555
>gi|290996790|ref|XP_002680965.1| ATP dependent RNA helicase [Naegleria gruberi]
gi|284094587|gb|EFC48221.1| ATP dependent RNA helicase [Naegleria gruberi]
Length = 1040
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 254/501 (50%), Gaps = 108/501 (21%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ------- 53
MAD+ YD AV+DEIQM+ RG ++TRALLG+ A E+H+CGD +A+ +++
Sbjct: 452 MADLNEVYDVAVVDEIQMISDNQRGAAWTRALLGLQAREIHICGDGSALTIVKNLIFGGD 511
Query: 54 ------------------------------------------QILQVT----GDDVKVQS 67
++LQ T D + V
Sbjct: 512 NKLDAEIEVVESENPNYDPTSESDNVDSNQNLYHYHQPVAANKLLQYTKSGIADSIDVIP 571
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y R+ PL + L GS NI+ DCIVTFSR+ IY +KK IE C ++YG+LPPE
Sbjct: 572 YTRMKPLEISSESLQGSVQNIKDFDCIVTFSRNEIYEIKKMIEINTGIRCCVIYGALPPE 631
Query: 127 TRTRQATRFNDASSE----------FDVLVASDAIGMGLNLNISRIIFSTMKKFD----G 172
RT QA FND+ ++ F VLVASDA+GMGLNLNI R++F M K+D G
Sbjct: 632 VRTEQAELFNDSGNQDPEENGGQRDFTVLVASDAVGMGLNLNIKRVVFYRMTKYDYSKGG 691
Query: 173 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
V D+++ VKQIAGRAGR G +G+VT DL LH+ + P+ + AGLFP
Sbjct: 692 VAPLDVSL--VKQIAGRAGRRGFH-EIGQVTTFYENDLQYLHQCMNIPNEEITKAGLFPE 748
Query: 233 FDLIYMYSRLH--------PDS---SLYGILEHFLENAKLSENYFFANCEEVLKVATVID 281
+D + +S+++ P+ SLY +LE F +++ +++FF + ++VL +AT ID
Sbjct: 749 WDQVESFSKVYKAKELANNPEGSGISLYEVLEKFFALSRIHKDFFFCDVQQVLDLATSID 808
Query: 282 QL--PLRLHEKYLFCISPV-------DMN----DDISSQGLTQFATNYSKKGIV----QL 324
L L +K+ F +PV +M+ +D S+ + N + I+ ++
Sbjct: 809 DAGPKLTLKQKFDFVNAPVPGFDRAKEMHIRYVEDFSNPNIAAVPLNIDMENILRILDKI 868
Query: 325 RE---IFTPGTLQVPKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAIC 379
RE + G + Q AL+ +E H+++DLY+WL+ R F D+E A + +
Sbjct: 869 REKAKVTEQGFVNSVSVYLQEALKNIEFYHRMIDLYLWLANRYPLRF-DKEAAEQAREV- 926
Query: 380 SMLIEEFLERLGWQKPRVKKV 400
L+ E E L Q KK+
Sbjct: 927 --LMTELTESLLNQTEENKKI 945
>gi|390598472|gb|EIN07870.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 764
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 216/424 (50%), Gaps = 33/424 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD V+DEIQ++ RG ++T A+L +CA ELHLCGD AVP+I+ I++ TGD++ +
Sbjct: 307 YDVGVVDEIQLIKDDDRGGAWTSAVLSLCAKELHLCGDETAVPIIEDIVKDTGDELIINR 366
Query: 68 YERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RL+PL L S F N++ GDC+VTFSR+ I+++K+ IE C++ YG LPPE
Sbjct: 367 YQRLTPLHVAPKSLESNFKNVKKGDCVVTFSRNNIFQVKEQIEEETGLRCAVAYGRLPPE 426
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R++QA FND S +DV+V SDAIG+GLNL I+R++F M K+DG + L P +KQI
Sbjct: 427 LRSKQAALFNDPKSGYDVIVGSDAIGLGLNLKINRVVFEAMHKWDGETTQVLPTPLIKQI 486
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN-FDLIYMYSRL 242
AGRAGRY G G VTCL ED+P+L ++ P A L N + ++ L
Sbjct: 487 AGRAGRYGLHGQGNAGGVVTCLHEEDMPILRAAMEAPLDQQREARLHINAAEADPVFQAL 546
Query: 243 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDM 300
+++ E + Y F + + +D+ L L E+ +P +
Sbjct: 547 PRNTTTSAAFEALHHLGRTRPPYLFVLDAKYRRRTEFVDRFAGDLTLAERMTLLNAPFQL 606
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVP---------------KTQA----- 340
+S+ + T Y K +V + + L+ K +A
Sbjct: 607 RGPLSAGVAEEVVTLYRNKFVVWIEAVIQKFKLKETLLEVLDRMEREEMGQKAEALAGMD 666
Query: 341 ------ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
+ LE +HK L ++VW +R +FPD A K + L+ + +K
Sbjct: 667 PEYCVETMAALEQLHKTLAVHVWYGYRNPVAFPDMAYAEGMKEQVEKAMNWTLKTMAGKK 726
Query: 395 PRVK 398
+ K
Sbjct: 727 IKTK 730
>gi|449018378|dbj|BAM81780.1| probable mitochondrial ATP-dependent RNA helicase Suv3
[Cyanidioschyzon merolae strain 10D]
Length = 843
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 244/454 (53%), Gaps = 68/454 (14%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-T 59
MAD+ A++DE+QM+ + RG ++TRA+LG+ A+ELHLCG P+AV +++ +++
Sbjct: 342 MADLYRPVQVAIVDEVQMIAERERGGAWTRAILGLPADELHLCGCPSAVDVVRAMIEEDC 401
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFS-----NIQTGDCIVTFSRHAIYRLKKAIESRG-K 113
+ ++V++YERL PL LG ++ GDC VTFSR ++R+K +E K
Sbjct: 402 HEQLEVRTYERLGPLRVSEKALGETQRQWSRGVRAGDCFVTFSRRELFRIKHQLERNAIK 461
Query: 114 HL-CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
L C+++YGSLPPETR QA FN+A + +LVA+DA+GMGLNLNI R+IFS + KFDG
Sbjct: 462 PLQCAVIYGSLPPETRREQAQLFNEADTH-SILVATDAVGMGLNLNIRRMIFSALDKFDG 520
Query: 173 VELRDLTVPEVKQIAGRAGRYGS---KFPVGEVTCLDSEDL----PLLHKSLLE----PS 221
+ R LT E+ QIAGRAGRY + GEVT +DL +LH + ++ P+
Sbjct: 521 TQRRPLTTAEILQIAGRAGRYAGPDRRPQCGEVTAFRQDDLRRLRSILHGAGIDTHGWPA 580
Query: 222 PM----LESAGLFPNFDLIYMY-----------------------SRLHPDSSLYGILEH 254
+ + AGL P +++ + ++ P S LY E+
Sbjct: 581 SIVPEKVTKAGLSPTREMMEAFAARCTAELASRSASGDDLMRRAATKRPPLSELYEKFEN 640
Query: 255 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLF------CISPVDMNDDISSQG 308
L S YF + +V ++ ++++ R+ E F ++P+ ++D + +
Sbjct: 641 -LAQVDASGRYFVCDLTDVKRICRLLER--ARVDEWMTFDLLYSASMAPLKLDDAAACEA 697
Query: 309 LTQFATNYSKKGIVQ-----------LREIF-TPGTLQVPKTQAALRELESIHKVLDLYV 356
+ QF ++ G+V+ LR + P P+T + LRELES++ VLDLY
Sbjct: 698 MVQFMRAFTTSGVVRLTLQQCGSRMALRWLSGAPQWSSGPRTVSELRELESLYHVLDLYN 757
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
W + R ++F DR+ A+ + C+ + L L
Sbjct: 758 WFANRYTDAFVDRDRASELRQRCAEAVARGLANL 791
>gi|449543322|gb|EMD34298.1| hypothetical protein CERSUDRAFT_125481, partial [Ceriporiopsis
subvermispora B]
Length = 806
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 220/411 (53%), Gaps = 21/411 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + DYD AV+DEIQ++ RG ++T A+LG+ A ELHLCG+ AVPLIQ +L+ TG
Sbjct: 345 MTPLNRDYDVAVLDEIQLIADPDRGGAWTAAVLGLNARELHLCGEETAVPLIQAMLRDTG 404
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + V Y+RL+PL LG + ++ GDCIVTFSR I +KK +E C++ Y
Sbjct: 405 DRLIVNRYQRLTPLKVAETNLGDLTQLEKGDCIVTFSRKGILNIKKLVEKGTGMQCAVAY 464
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPE R QA FND + + +L+ SDAIG+GLNL I R+IF +++KFDG +L L V
Sbjct: 465 GRLPPEIRNEQAALFNDPENNYGILIGSDAIGLGLNLKIKRMIFESVRKFDGNKLSPLPV 524
Query: 181 PEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
+KQIAGRAGR+G S G VT EDL ++ ++L P + A + + ++
Sbjct: 525 ALIKQIAGRAGRFGLHSDDSGGVVTTFAEEDLDIVREALAAPMGEHKFARMNLSSEIFRA 584
Query: 239 YSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCI 295
S L P+S +L+ ++L Y + +V + ID + + ++ LF
Sbjct: 585 ISTALPPNSPSATVLQVMHYVSRLHPRYSLFDMTQVKNIFEFIDVVAPDVPAADQILFTQ 644
Query: 296 SPVDMND----DISSQGLTQFATNYSKKGIVQLR-----------EIFTPGTLQVPKTQA 340
+P D DI + + ++ T+ L+ E G PK+ A
Sbjct: 645 APTPWRDPYGVDIIGRMMLRYRTDLRVDLYASLQDSTLWNKFVEAEAIQRGDKPEPKSLA 704
Query: 341 -ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L LES+HKV+ Y+W S+R +FP + K L++ L+R+
Sbjct: 705 DVLNILESVHKVVTFYLWTSYRKPLAFPHMKEGFDLKEKTERLMDWCLDRM 755
>gi|254566389|ref|XP_002490305.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|238030101|emb|CAY68024.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|328350701|emb|CCA37101.1| hypothetical protein PP7435_Chr1-0967 [Komagataella pastoris CBS
7435]
Length = 807
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 230/435 (52%), Gaps = 55/435 (12%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DEIQM+ RG S+T ++G+ A E+HLCG+ ++VPLI++I+Q TGD+++V
Sbjct: 357 FDVVVLDEIQMISDPDRGQSWTNVVIGVLAKEIHLCGEESSVPLIKRIIQETGDEIEVNK 416
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y RL LV + P+ S+++ GDCIV+FS++ I K IE K C ++YG+LPPE
Sbjct: 417 YNRLGQLVVDDKPI-DISDLRRGDCIVSFSKNMILNTKSHIEDVTKFKCGVIYGALPPEV 475
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R+R+A +FND E+D++VASDAIGMGLNLNI+R++F+T +K+DG L+ + KQI
Sbjct: 476 RSREAQKFNDG--EYDLIVASDAIGMGLNLNINRVVFTTSQKYDGRSNIILSDSQFKQIG 533
Query: 188 GRAGRYG-------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
GRAGR+G +K P+G V+ D++ L + + L+ A L+P +L Y
Sbjct: 534 GRAGRFGVKSSTDSNKPPIGHVSAFDADILDNIRSGINAKIEYLQRAMLWPTDELWIKYY 593
Query: 241 RLHP-DSSLYGILEHFLENAKL----SENYFFANCEEVLKVATVI--DQLPLRLHEKYLF 293
+ P ++L +LE F E+ K S F + E K A +QL L +L
Sbjct: 594 SMFPRGTTLVQMLERFEEDLKTLNASSNGLFQVSPTEFKKEAGNFFCNQLDKNLQSHFLI 653
Query: 294 CIS------PVDMNDDISSQGLTQFAT---------------NYSKKGIVQLREI---FT 329
P+ ++ + S + T N K I+ + I F+
Sbjct: 654 TDQIRMLNVPISLDTEQSMNAHQNYLTGIKVDAIRDYLETVINRDVKSILDTKVITMLFS 713
Query: 330 PGTLQVPKTQAA--------------LRELESIHKVLDLYVWLSFRLEESFPDRELAASQ 375
T +A LR LE+IHK++ +Y WLS+R ++F DRE
Sbjct: 714 KVTCPSKPPEAKNKRNAGRGKPQYEELRSLETIHKLITVYTWLSYRYSKNFIDREGVTEM 773
Query: 376 KAICSMLIEEFLERL 390
K I I + L+ +
Sbjct: 774 KDIVENTIVKELDNI 788
>gi|294658399|ref|XP_460737.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
gi|202953098|emb|CAG89077.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
Length = 743
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 220/407 (54%), Gaps = 31/407 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +IDEIQM+ RG ++T A+LG+ A E+H+CG+ +AVPLI ++ ++TGD+V++ Y
Sbjct: 313 DICIIDEIQMIADPRRGEAWTNAVLGVQAKEIHMCGEESAVPLILKLAKITGDEVEINKY 372
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RL L + + +F N+Q GDC++ FS+ I LK IE ++YG+LPPE R
Sbjct: 373 NRLGKLTVSDKEVSNFKNLQKGDCVIAFSKRKILELKCEIERSTNLKVGVIYGALPPEIR 432
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A FN S ++DVLVASDA+GMGLNL I RI+F KKF+G E LT E KQIAG
Sbjct: 433 SKEANGFN--SGQYDVLVASDAVGMGLNLKIKRIVFFATKKFNGNETIPLTASETKQIAG 490
Query: 189 RAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--SRLHP 244
RAGR+ E VT + +DL L K + EP L A +P D ++ Y S+
Sbjct: 491 RAGRFSKDEGESEGFVTAMYKKDLIFLKKMMNEPIQNLSKACTWPT-DKVWTYYMSKFPK 549
Query: 245 DSSLYGILEHF-LENAKLS-ENYFFANCE------------EVLKVATVIDQLPLRLHEK 290
+S Y IL F E + L EN+F + ++ K T+ DQL L L
Sbjct: 550 YTSFYDILAQFEKETSSLEMENFFLTALDSRYEILNLFLRNDLYKKTTIEDQLRLSLAPV 609
Query: 291 YLFCISPVDMNDDIS-SQGLTQ------FATNYSKKGIVQLREIFTPGTLQVPKTQAALR 343
+ SP+ ++ Q +T+ F N+ I++ R FT T +T L+
Sbjct: 610 NINMSSPLVVDTAFKFFQNITKCETKNIFDFNFLHTEILKRRPKFTATTESTVQT---LQ 666
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
LE HK++ +++WLS R F D+E A K + I E L L
Sbjct: 667 SLEENHKLVLIFLWLSQRWPTLFVDKESATETKTLIEKRISEELLNL 713
>gi|448513963|ref|XP_003867030.1| Suv3 protein [Candida orthopsilosis Co 90-125]
gi|380351368|emb|CCG21592.1| Suv3 protein [Candida orthopsilosis Co 90-125]
Length = 718
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 161/420 (38%), Positives = 231/420 (55%), Gaps = 56/420 (13%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+G RG +T A+LG+ A+E+HLCG+ +AVPLI++++++TGD++ V+ +
Sbjct: 308 DLCVIDEIQMIGDAQRGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLVKITGDELVVKKF 367
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L P S ++ GDC+V FS+ I K +IE K ++YG+LPPE R
Sbjct: 368 DRLGKLTMEKKP-TSLKTLKKGDCLVVFSKRKILEYKCSIEQETKLKVGMIYGALPPEIR 426
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
++A RFN S E+DVLVASDAIGMGLNL I+RI+FS + KF+G E+ +LT +VKQIAG
Sbjct: 427 AQEAVRFN--SGEYDVLVASDAIGMGLNLKINRIVFSGINKFNGSEVENLTTSQVKQIAG 484
Query: 189 RAGRY----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--SRL 242
RAGR+ GSK G VT L L + + L P LE A L+P L++ Y +
Sbjct: 485 RAGRFSAEHGSK--EGLVTALQRSSLLYIKECLETPIVELEKACLWPT-GLVWKYYMTNY 541
Query: 243 HPDSSLYGILEHFLENAKL---SENYFFANCE------------EVLKVATVIDQLPLRL 287
+S L L HF+ N+ L SE YF A+ E ++LK T+ DQL L
Sbjct: 542 STESPLSETLSHFI-NSTLNFKSELYFLADLEVKTGILEIISKDKLLKNMTIDDQLTL-- 598
Query: 288 HEKYLFCISPVD----MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA-- 341
+PV MN ++ + +F N ++ + IF G L + A
Sbjct: 599 ------SETPVSIHGPMNRELVIPTVKKFFKNIVER---DCKTIFDFGFLDLHLLSAKPL 649
Query: 342 -----------LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ +LES+HK+ L++WLS R F D++ A KA+ I E L +
Sbjct: 650 LNKNIKISLGNVEKLESMHKLTLLFLWLSQRFPTLFIDKKSAMELKALVEKRITEELNNI 709
>gi|207340471|gb|EDZ68808.1| YPL029Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150128|emb|CAY86931.1| Suv3p [Saccharomyces cerevisiae EC1118]
gi|323352061|gb|EGA84600.1| Suv3p [Saccharomyces cerevisiae VL3]
gi|365762858|gb|EHN04391.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKRKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|406607580|emb|CCH41051.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 863
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 223/401 (55%), Gaps = 17/401 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V ++ V+DEIQM+ K RG++++ ALLG A+E+HLCG+ + +PLI++I + TG
Sbjct: 310 MIPVNQRFEVVVLDEIQMIADKFRGWAWSHALLGAQADEIHLCGEESVIPLIKRIAETTG 369
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+V + YERL L + P+ G + ++ GDCIV FS+ I K+ I+++ C ++
Sbjct: 370 DEVIINRYERLGELQIEDQPVTGGLNGLEKGDCIVAFSKKRIMAYKEEIQNKTDLKCGVI 429
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LP ETR +A RFN+ E+DVLVASDAIGMGLNL+I+R+IF + KKFDG +LR L
Sbjct: 430 YGALPAETRATEAERFNNG--EYDVLVASDAIGMGLNLSINRVIFDSHKKFDGDQLRALE 487
Query: 180 VPEVKQIAGRAGRY------GSKFP-VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
P+VKQI GRAGR+ G K +G+++ + L + +S+ P+ LE A ++P+
Sbjct: 488 SPQVKQIGGRAGRFKAPGADGKKSKSLGKISAFYPDTLEFIRESMSTPTIFLERADVWPS 547
Query: 233 FDLIYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL--PLRLHE 289
+ +Y+ P + L +LE F +N + ++ Y + + L+VA ++++ + + +
Sbjct: 548 DTIWSLYTSTFPKQTRLKIVLETFHKNVEDTKLYRISTLRDRLEVAHALNEISNSMLVGD 607
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSK---KGIVQLREIFTPGTLQVPKTQAALRELE 346
+ +P+ + F N K I+ L P Q L E
Sbjct: 608 QLRMSTAPLSSTLPRYHAVIEHFGNNVIHGFTKSILDF-AFLNFSCLNRPARQDDLSTYE 666
Query: 347 SIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+HK + L++W+ R F DRE A K IE L
Sbjct: 667 ELHKYVLLFLWMHNRYPSYFVDRECAVEIKDSLESKIEAAL 707
>gi|426200746|gb|EKV50670.1| hypothetical protein AGABI2DRAFT_200532 [Agaricus bisporus var.
bisporus H97]
Length = 525
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 171/280 (61%), Gaps = 22/280 (7%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
+YD VIDEIQM+G RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++
Sbjct: 200 EYDVGVIDEIQMIGDPQRGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIR 259
Query: 67 SYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL+PL+ LG S +Q GDC++ FSR +I+ LK IE + C++VYG LPP
Sbjct: 260 QYERLTPLLVEEESLGGDLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPP 319
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEV 183
E R+ QA FND S FDV++ SDAIGMGLNL I RIIFS + K DG L++ +
Sbjct: 320 EIRSEQAALFNDPDSGFDVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQT 379
Query: 184 KQIAGRAGRYGSKF----PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFDLIYM 238
KQIAGRAGRYG G VT L +DLP + +L PS P L A + P + +
Sbjct: 380 KQIAGRAGRYGHSIDPSNSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVESMEA 439
Query: 239 Y-------------SRLHPDSSLYGILEHFLENAKLSENY 265
+ + L P SS L FLE+ +++ Y
Sbjct: 440 FCAALPVSKSHSQHNSLFPTSSGTN-LTSFLESIQMAHVY 478
>gi|50307239|ref|XP_453598.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642732|emb|CAH00694.1| KLLA0D12034p [Kluyveromyces lactis]
Length = 751
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 231/419 (55%), Gaps = 21/419 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D+D V+DE+QML K RG+++T A+LG+ A E+HLCG+ + +PL+ +I+++TG
Sbjct: 315 MIPLNRDFDICVLDEVQMLSEKDRGWAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTG 374
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V YERL L + PL + +++GDC++ FS+ +I LK IE ++V
Sbjct: 375 DTLVVNRYERLGKLEVEHQPLANGLKGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVV 434
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S E+D+LVASDAIGMGLNL+I+R++F+ KF+GVE+ LT
Sbjct: 435 YGSLPPETRVKQAKLFN--SGEYDILVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLT 492
Query: 180 VPEVKQIAGRAGRY-------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+KQI GRAGR+ SK +G VT +D + L + K + P LE A ++P
Sbjct: 493 FSNIKQIGGRAGRFKGKKADGSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPT 552
Query: 233 FDLIY-MYSRLHPDSSLYGILEHFLEN--AKLSENYFFANCEEVLK-VATVIDQLPLRLH 288
+L+ + S P L +L F + ++++ + ++ K V+T D L L
Sbjct: 553 DELVNDLLSYYPPGMKLTVLLNKFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRGLTLK 612
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL----QVPKTQAALRE 344
+K +PV +N + + +F +++ + L P + + +L
Sbjct: 613 DKLRLSNAPVRINPMVMNI-FKKFCETIAERRTMSLLNYPLPFLMLHSRHIKDENVSLEF 671
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
E H++++LY WL R F D E A K C M+I + LE L +K KK R
Sbjct: 672 YEEFHQLINLYCWLHIRYPNLFVDYESAIDIKNHCEMMIFKKLEFL--KKNPYKKFNKR 728
>gi|452979093|gb|EME78856.1| hypothetical protein MYCFIDRAFT_60464 [Pseudocercospora fijiensis
CIRAD86]
Length = 918
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 147/437 (33%), Positives = 233/437 (53%), Gaps = 43/437 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ VPLI++I GD +++ Y
Sbjct: 343 DVAVIDEIQMIGNSHRGWAWTQALLGVMAKEVHLCGEERTVPLIKEICASVGDPLEIHRY 402
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLSPL + L G ++ GDC+++FS I+ L+K IE + VYGSLPPET
Sbjct: 403 ERLSPLQMSDKSLDGKLKELRKGDCVISFSVMGIHALRKQIEKSTGRKVATVYGSLPPET 462
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +QA FND ++++D LVASDA+GMGLNL I RI+F + KF+G + L++ ++KQI
Sbjct: 463 RAQQARLFNDPNNDYDFLVASDAVGMGLNLAIKRIVFESSSKFNGYQRETLSIADIKQIG 522
Query: 188 GRAGRY--------------------GSKFP-------------VGEVTCLDSEDLPLLH 214
GRAGR+ G P VG VT L+ D P++
Sbjct: 523 GRAGRFRTSAQAAEAPASEADLAAAKGEPRPDQEMLDADDTPENVGLVTTLERFDFPIIR 582
Query: 215 KSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEE 272
++ EP P ++SAG+FP ++ ++ P + + IL E +++ + ++
Sbjct: 583 TAMGSEPEP-IKSAGIFPPAPVLERFAGYFPPGTPFSYILARLHELSQMHPRFHLCGLKD 641
Query: 273 VLKVATVIDQLP-LRLHEKYLFCISPVDMND-DISSQGLTQFA---TNYSKKGIVQLREI 327
+ +A +I+ + L + +K + P + D D+ + + A N S + L +
Sbjct: 642 QVWIADLIEGIEGLSIADKNILTSCPANKGDADMWIKLMPDMARCIANQSGGDLADLENL 701
Query: 328 -FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEF 386
+V T+ LR LE +HK + +Y+WLS+R F R LA K + IE+
Sbjct: 702 PLEVLETEVTGTREYLRALEQLHKGIVVYLWLSYRFAGVFNTRALAFHVKKLVEDKIEKT 761
Query: 387 LERLGWQKPRVKKVTPR 403
L + + + + + + R
Sbjct: 762 LSQFSFSQAQRRLLASR 778
>gi|398392779|ref|XP_003849849.1| hypothetical protein MYCGRDRAFT_47262, partial [Zymoseptoria
tritici IPO323]
gi|339469726|gb|EGP84825.1| hypothetical protein MYCGRDRAFT_47262 [Zymoseptoria tritici IPO323]
Length = 731
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 226/419 (53%), Gaps = 30/419 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + D AVIDEIQM+G RG+++T ALLG+ A E+HLCG+ VPLI +I G
Sbjct: 145 MVPLNTKVDVAVIDEIQMIGDPDRGWAWTNALLGVQAKEVHLCGEERTVPLITEICASIG 204
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V Y+RLSPL + L G S ++ GDCIV+FS I+ L++ IE R +IV
Sbjct: 205 DKLHVHHYQRLSPLQVASTSLNGDLSLLRKGDCIVSFSVVGIHALRREIEKRTGRKVAIV 264
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FND ++++D LVASDA+GMGLNL I R+IF + KFDGV L+
Sbjct: 265 YGSLPPETRAQQARLFNDPNNDYDFLVASDAVGMGLNLAIKRMIFESSSKFDGVARGPLS 324
Query: 180 VPEVKQIAGRAGRY------------------GSKFP--VGEVTCLDSEDLPLLHKSLL- 218
+ +KQI GRAGR+ P +G VT L+ D ++ ++
Sbjct: 325 IAAIKQIGGRAGRFPRAAQPTIDPHGVYIMNRAGDVPDNIGLVTTLEDFDYSVVLSAMRS 384
Query: 219 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVA 277
EP P L +AG+FP ++ ++ P + + IL E +++ + + + VA
Sbjct: 385 EPEP-LATAGIFPPTPVLERFASYFPPGTPFSYILTRLHELSQMHRRFHLCGLRDQVWVA 443
Query: 278 TVIDQLP-LRLHEKYLFCISPVDMND-DISSQGLTQFA---TNYSKKGIVQLREIFTPGT 332
+I+ + L ++++ + C P D ++ + + FA S ++ + E+
Sbjct: 444 DLIEPVQGLTINDRNMICACPAAKGDIELWRKLMPAFARCIATGSGGDVLDIEELPLDIL 503
Query: 333 LQVPK-TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ T+ L++LE +HK L Y+WLS+R F R LA K + IE L L
Sbjct: 504 DEADTITREQLKKLEQLHKGLVAYLWLSYRFAGVFRTRPLATHVKGLVEEKIEYVLANL 562
>gi|409077774|gb|EKM78139.1| hypothetical protein AGABI1DRAFT_76572, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 439
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 155/236 (65%), Gaps = 8/236 (3%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
+YD VIDEIQM+G RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++
Sbjct: 200 EYDVGVIDEIQMIGDPQRGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIR 259
Query: 67 SYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL+PL+ LG S +Q GDC++ FSR +I+ LK IE + C++VYG LPP
Sbjct: 260 QYERLTPLLVEEESLGGDLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPP 319
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEV 183
E R+ QA FND S FDV++ SDAIGMGLNL I RIIFS + K DG L++ +
Sbjct: 320 EIRSEQAALFNDPDSGFDVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKIPLSISQT 379
Query: 184 KQIAGRAGRYGSKF----PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFD 234
KQIAGRAGRYG G VT L +DLP + +L PS P L A + P +
Sbjct: 380 KQIAGRAGRYGHSIDPSNSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVE 435
>gi|344233399|gb|EGV65271.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 535
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 224/411 (54%), Gaps = 25/411 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D +IDEIQML RG ++T ALLG+ A E+H+CG+ +V L+++I +TG
Sbjct: 121 MVPLFKKMDLCIIDEIQMLADDMRGEAWTSALLGVQAKEVHVCGEERSVDLVRRIATLTG 180
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D++++ YERL L + P+ ++ GDC++ FS+ I +LK AIE K +++Y
Sbjct: 181 DEIEINRYERLGKLEVASQPVRGLERLKPGDCVIAFSKRKILQLKVAIEKSTKLKVAVIY 240
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R+ QA FN S +FDVLVASDA+GMGLNL I RI+FST +KF+G + LT
Sbjct: 241 GALPPEIRSEQAHGFN--SGKFDVLVASDAVGMGLNLAIKRIVFSTTQKFNGTSVASLTQ 298
Query: 181 PEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
V+QI GRAGR+ G +T ++ +DL + K + P + A ++P ++
Sbjct: 299 SAVRQIGGRAGRFSHDKSKSGGVITAMNKKDLAYIKKHMDGPVEDIPKACVWPTNEVWTS 358
Query: 239 Y-SRLHPDSSLYGILEHFLENAKLSENYFFANCE------EVLKVATVIDQLPLRLHEKY 291
Y S+ HP++S+ IL+ S+N+F N E E+L ++ QL + ++
Sbjct: 359 YISKFHPNTSMESILKDIDNGPINSDNFFLTNIESRMGIMELLSADGIMQQLS--IEDQL 416
Query: 292 LFCISPVDMNDD--ISSQGLTQFATN-YSKKGIVQLREIFTPGTL---------QVPKTQ 339
I+PV++N + + L ++ N K + L F P + V ++
Sbjct: 417 KLSIAPVNLNINSPLVLGTLIKYIRNLVETKSMSILTVDFLPLEILRSKPLRLSPVAESL 476
Query: 340 AALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L LE HK++ L++WL+ R F D E A K++ I E L +
Sbjct: 477 QVLTVLEDTHKLVLLFMWLAQRWPYLFVDVESAHDWKSLIEKRIGEELSNM 527
>gi|426199143|gb|EKV49068.1| hypothetical protein AGABI2DRAFT_201173, partial [Agaricus bisporus
var. bisporus H97]
Length = 439
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 155/236 (65%), Gaps = 8/236 (3%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
+YD VIDEIQM+G RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++
Sbjct: 200 EYDVGVIDEIQMIGDPQRGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIR 259
Query: 67 SYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL+PL+ LG S +Q GDC++ FSR +I+ LK IE + C++VYG LPP
Sbjct: 260 QYERLTPLLVEEESLGGDLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPP 319
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEV 183
E R+ QA FND S FDV++ SDAIGMGLNL I RIIFS + K DG L++ +
Sbjct: 320 EIRSEQAALFNDPDSGFDVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQT 379
Query: 184 KQIAGRAGRYGSKF----PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFD 234
KQIAGRAGRYG G VT L +DLP + +L PS P L A + P +
Sbjct: 380 KQIAGRAGRYGHSIDPSNSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVE 435
>gi|401623187|gb|EJS41293.1| suv3p [Saccharomyces arboricola H-6]
Length = 737
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 233/414 (56%), Gaps = 20/414 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PLI+ I+++TG
Sbjct: 311 MVPLNQKFDVVVLDEIQMMSDADRGWAWTNALLGVVSKEVHLCGEKSVLPLIKNIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L + P+ G ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEDNPVKGGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA+ FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQASLFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTDMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSKFPVGEV-----TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ SK P G+V T +S L + K++ P L +A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSKSPSGDVPQGFITSFESRVLKSVRKAIEAPVEYLRTAVTWPTDE 548
Query: 235 L-IYMYSRLHPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLP-LRLHEK 290
+ + ++ P + +L+ + + S + F ++ + LKV + + + + +K
Sbjct: 549 ICAQLMTQFPPGTPASVLLQTIADELEKSSDKLFTLSDLKNKLKVIALFEHMEDIPFLDK 608
Query: 291 YLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALREL 345
+PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 609 LKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVY 666
Query: 346 ESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
ES++ ++ LY WLS R F D E A K C M+I E L+RL + P ++K
Sbjct: 667 ESLYNIITLYFWLSNRYPNYFIDMESAKDMKYFCEMIIFEKLDRLK-KNPYIRK 719
>gi|428673345|gb|EKX74258.1| ATP-dependent RNA and DNA helicase, putative [Babesia equi]
Length = 691
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 231/414 (55%), Gaps = 33/414 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + YDCA++DE+QM+G RG+++TRA LG+ A E+H+CG+ + +PL ++++ ++G
Sbjct: 248 MAPLNNIYDCAIVDEMQMIGDPVRGYAWTRAFLGLKAKEVHVCGNESCLPLARKLVDISG 307
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL----- 115
D ++++ + RLS LV L+ L ++ GDC+V FSR ++ L+ IES +
Sbjct: 308 DTLEIKRHARLSNLVILDKEL-LIEELKPGDCVVCFSRFDVFSLRNKIESTKYNWDTMDH 366
Query: 116 --CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 173
SIVYGSLPPE R Q +FN+ ++ +L++SDAIGMG+N+ I RIIF ++KK+DG
Sbjct: 367 SKTSIVYGSLPPEVRCDQIQKFNERKAK--ILISSDAIGMGVNVRIRRIIFHSLKKYDGN 424
Query: 174 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
E R L + EV+QIAGRAGRY GEV CL D LL K ++ P P ++ A + P+
Sbjct: 425 EKRTLNISEVQQIAGRAGRYSMSCGHGEVGCLQERDTMLLKKLMVSPQPPIDKAIIAPST 484
Query: 234 DLIYMYSRLHPD-------SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 286
+I +S + S +L ++ ++ E FA + +V I +LP+
Sbjct: 485 SVISAFSTSVTNVAGNTNFSDSIKLLFSMVKTGEIFEVCDFAPLNRIARVLRAI-ELPIS 543
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK--------- 337
+Y+F M + L FA ++S V+L IFT +L K
Sbjct: 544 TLVEYIFVPLGTGM---LPILVLRTFAISHSILNSVKLNNIFTEESLSDDKFYSVEHNKH 600
Query: 338 ---TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+ LE +++ L++Y+WLS + + + D++ AA K + + ++L+
Sbjct: 601 AEDAYTHFKTLELLYQTLEIYLWLSIKFPKVYVDKDAAAVIKTKIANAMSKYLD 654
>gi|213406782|ref|XP_002174162.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
gi|212002209|gb|EEB07869.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
Length = 663
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 214/377 (56%), Gaps = 17/377 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ YD AVIDEIQ++ + RG+++T+ +LG+ A E+HLCG+ +AV LI+++ + T
Sbjct: 264 MADLHQQYDVAVIDEIQLISDENRGWAWTQCVLGLRAKEIHLCGEESAVELIKKLAEKTL 323
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+V+V YERL+ L L G N++ GDC+V FSR AI+ K +E C +V
Sbjct: 324 DEVEVHRYERLNALRVSKTSLNGDLGNVKDGDCVVAFSRRAIFEAKNTLEEFHNKKCCVV 383
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QAT FND +VL+ASDA+GMGLNL+I R++F+++ KF G D+
Sbjct: 384 YGSLPLEIRKQQATDFNDPKIPANVLLASDAVGMGLNLSIQRVVFTSLAKFTGSSFEDIP 443
Query: 180 VPEVKQIAGRAGRYGS------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG-LFPN 232
VP +KQIAGRAGRY + K GEVTCL +P+L ++L +P ML+ AG +FP+
Sbjct: 444 VPLIKQIAGRAGRYKASNNQDEKQSAGEVTCLYDYQMPILKRALSQPIRMLKQAGFMFPD 503
Query: 233 FDLIYMYSRLHPDSSLYGIL-EHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEK 290
D+ Y P Y L + + + +F + L + ++ + L + E+
Sbjct: 504 -DIWCEYFLTCPQDIPYSFLFRKMILLSNIPPCFFHCLIKSQLPILEILKPIETLTIRER 562
Query: 291 YLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV----PKTQAA-LREL 345
L P+ + + + + S VQL + F L V K Q+ L+++
Sbjct: 563 LLLTNIPIPLRWPTMKEFVYEIGEKLSLCTPVQLND-FEHFNLDVLNHKYKNQSDFLQQI 621
Query: 346 ESIHKVLDLYVWLSFRL 362
E ++K LD Y W+S R
Sbjct: 622 ELLYKKLDAYFWISLRF 638
>gi|363749699|ref|XP_003645067.1| hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888700|gb|AET38250.1| Hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
Length = 727
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 219/408 (53%), Gaps = 24/408 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++D V+DEIQML + RG+++T A LG ++E+HLCG+ + +PLIQ+++++TG
Sbjct: 300 MIPLNQEFDVVVLDEIQMLADEQRGWAWTNAFLGARSSEVHLCGERSVLPLIQKLVKITG 359
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
DD+ V Y RL LV + PL FS ++ GDC+++FS+ I LK +E + S++
Sbjct: 360 DDLIVNEYSRLGKLVIESEPLSLGFSGLKKGDCLISFSKRKILNLKLKVERCTNYKVSVI 419
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S D+L+ASDA+GMGLNL+I RI+F+ K++G E++ L
Sbjct: 420 YGSLPPETRIKQANMFNSGHS--DILIASDAVGMGLNLSIKRIVFTESSKWNGAEMQPLE 477
Query: 180 VPEVKQIAGRAGRYGSKF------PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
P +KQI GRAGRY K G VT LD E L + + P L SA ++P
Sbjct: 478 DPIIKQIGGRAGRYKPKDNSDVNPSKGYVTGLDDEILSAVRSGINAPITYLSSAIIWPTE 537
Query: 234 DLIY-MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV-----IDQLPLRL 287
++I ++ P + ++E+F + N + + K+ + I+ L LR
Sbjct: 538 EIITSALAKYQPGTKFSTLIENFNRDVTTKSNNLYTLADSSKKIEFIREYEKIEGLSLR- 596
Query: 288 HEKYLFCISPVDMNDD-ISSQGLTQFATNYSKKGIVQLREIFTP----GTLQVPKTQAAL 342
L +S + D + +F +KK L P + + AL
Sbjct: 597 ---DLIKLSYAPIRDSPLLKTTFLKFCHTIAKKQTKSLLNYALPLDKLNSKYIKNEDVAL 653
Query: 343 RELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
E +H ++ +++WL+ R E F DRE A K C +I + LE L
Sbjct: 654 DFYEELHHIVMMFMWLNIRYPEYFIDRESAIDIKNHCEYIIYKKLEIL 701
>gi|255715361|ref|XP_002553962.1| KLTH0E11176p [Lachancea thermotolerans]
gi|238935344|emb|CAR23525.1| KLTH0E11176p [Lachancea thermotolerans CBS 6340]
Length = 744
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/413 (35%), Positives = 222/413 (53%), Gaps = 28/413 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+G RG+++T ALLG A E+HLCG+ +A+PL+Q+I ++TG
Sbjct: 307 MVPLSQKFDVVVLDEIQMMGDPDRGWAWTNALLGSIAREVHLCGEKSALPLVQKITKMTG 366
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ V YERL L + N ++ GDC+V FS+ I LK IE + ++V
Sbjct: 367 DELIVNEYERLGELRIEENALKDGLKGLRKGDCVVAFSKKRILDLKLQIEKQTDLKVAVV 426
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S E+DVLVASDA+GMGLNL+I R+IF+T KF+G E+ +LT
Sbjct: 427 YGSLPPETRIQQANMFN--SGEYDVLVASDAVGMGLNLSIERVIFTTHMKFNGQEMMELT 484
Query: 180 VPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
VKQI GRAGR+ G K VG VT +D++ L + + P L+SA
Sbjct: 485 SSNVKQIGGRAGRFKVSRTPANSVDGGKKASVGLVTGVDTKVLAAVKSGMEAPIEYLQSA 544
Query: 228 GLFPNFDLI-YMYSRLHPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLP 284
++P ++ + + P + + +L+ + + F ++ + L ++ + +
Sbjct: 545 VVWPTDEICGKLMTHFPPGTQVSELLQTLAADVEKRSAKLFTLSDLKNRLNSISLFEHME 604
Query: 285 -LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR------EIFTPGTLQVPK 337
+ EK +PV + + QF ++ L I P + K
Sbjct: 605 GIPFFEKLRLSNAPVKDFPTV-KKAYVQFCRTIEQRQTKSLLSYPFSFSILDPRYINSDK 663
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+L ES+H ++ LY WLS R F D++ A K +C M+I E L+RL
Sbjct: 664 Y--SLEHYESLHNIIMLYFWLSNRYPNYFIDQQSARELKDMCEMIIFEKLDRL 714
>gi|156120373|ref|NP_001095332.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos taurus]
gi|151555726|gb|AAI49120.1| SUPV3L1 protein [Bos taurus]
gi|296472119|tpg|DAA14234.1| TPA: suppressor of var1, 3-like 1 [Bos taurus]
Length = 535
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 173/257 (67%), Gaps = 6/257 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG
Sbjct: 279 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTG 338
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+DV+V++Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 339 EDVEVRTYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 397
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF ++ K E+
Sbjct: 398 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEI 457
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ SKF GEVT ++ EDL LL + L P +++AGL P +
Sbjct: 458 EPITTSQALQIAGRAGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQ 517
Query: 236 IYMYSRLHPDSSLYGIL 252
I M++ PD++L ++
Sbjct: 518 IEMFAYHLPDTTLSNLI 534
>gi|332029211|gb|EGI69194.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Acromyrmex echinatior]
Length = 672
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 218/396 (55%), Gaps = 65/396 (16%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA++ ++Y+ AVIDEIQ++ RG+++TRALLGI A+E+HLCG+ AA+ L++ I TG
Sbjct: 267 MANLQNNYEVAVIDEIQLMRDLNRGWAWTRALLGIPADEIHLCGEDAAIELVKAICVSTG 326
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+ L N + + +NI GDCIV F+++ IY + +++ES+ K + +++Y
Sbjct: 327 ENVEVRRYKRLTQLKVENRAVETLNNIMPGDCIVCFNKNDIYNVSRSLESKRKEV-AVIY 385
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
GSLPP T+ QA +FND ++ +LVA++AIGMGLNL+I RIIF T + E+
Sbjct: 386 GSLPPGTKLAQAAKFNDPNNSCKILVATNAIGMGLNLHIRRIIFYSLIQPTSNEKGEKEM 445
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFD 234
++V QIAGRAGRYG+ + G VT EDL L K+LL +P + AGL P D
Sbjct: 446 DVISVSAALQIAGRAGRYGTAWETGYVTTFKREDLLTL-KNLLSQTPETITQAGLHPTAD 504
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL N FA R + K
Sbjct: 505 QIELYAYHLPNSSL--------------SNLMFA-----------------RQYSK---- 529
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDL 354
ND I+ L Q I P ++PKT L LE + VLDL
Sbjct: 530 ------NDAITFNWLCQ--------------HIGWP--FRMPKTIIDLVHLEGVFDVLDL 567
Query: 355 YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
Y+WLS+R + FPD E+ + LIE + +L
Sbjct: 568 YLWLSYRFMDLFPDAEIVRDIQKELDALIEAGIVKL 603
>gi|339017941|ref|ZP_08644086.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752944|dbj|GAA07390.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 786
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 215/389 (55%), Gaps = 21/389 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDE QML RG ++T A++G A L++ G P +P++++I ++ GD + S
Sbjct: 392 DVAVIDEAQMLFDTDRGAAWTAAIMGAPARHLYVLGAPDCIPMVRRIAELCGDPLDEISL 451
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL P+ +++ TGD ++ FSR + L+ A+ G+ + ++VYG+L PE R
Sbjct: 452 ERKSPLRAAAQPV-KLTDLTTGDALIAFSRREVLDLRAALMQHGRRV-AVVYGALSPEVR 509
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN ++ D+L+A+DAIGMGLNL+I R++F+ +KKFDG + RDLTV EVKQI G
Sbjct: 510 RAEAQRFNSGAA--DILIATDAIGMGLNLSIKRVVFAALKKFDGKQTRDLTVQEVKQIGG 567
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPML-ESAGLF--PNFDLIYMYSRLHPD 245
RAGRYG K VG V L P + LE L E F P+ D++ +
Sbjct: 568 RAGRYG-KHEVGTVAVLAGAGSPSFIRRQLEADAELPEDLRPFVQPDADIVRAVATEIGS 626
Query: 246 SSLYGILE--HFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SLYG+L H K NY A+ E+ +A+ ++ + L L ++ + + PVD D
Sbjct: 627 ESLYGVLSRIHRAVLRKDDPNYRLADMEQAFAIASALEGVDGLDLTTRWSYAMCPVDDRD 686
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVWL 358
+ + L +A +++ R + PGT ++P ++ A RE E HK L + WL
Sbjct: 687 N-GIRRLVGWAADHAAG-----RRVLPPGTGRLPPSERASREELERAEKRHKRLVAWRWL 740
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFL 387
+ R E +PDRE A + IE L
Sbjct: 741 ALRFPEFYPDREEAEDTTRKLNDWIESVL 769
>gi|19115541|ref|NP_594629.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe 972h-]
gi|74676199|sp|O94445.1|SUV3_SCHPO RecName: Full=ATP-dependent RNA helicase suv3, mitochondrial;
Flags: Precursor
gi|4056555|emb|CAA22590.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe]
Length = 647
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 219/386 (56%), Gaps = 40/386 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ + +D AVIDEIQM+ +RG+++T+ LLG+ A E+HLCG+ + V L++ I ++T
Sbjct: 247 MCNLSTTFDVAVIDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQ 306
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
DD V YERL+PL L G S ++ GDC+V FSR I+ LK I+ +++
Sbjct: 307 DDFTVYRYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVI 366
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA+ FN SS+ ++L+ASDAIGMGLNL + RI+FS +KKF GV D+
Sbjct: 367 YGSLPPEVRNQQASLFNSKSSDENILLASDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIP 426
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
VP++KQIAGRAGR+ GSK G VT L +D L++++ P+ L +A + DL
Sbjct: 427 VPQIKQIAGRAGRHNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLF 486
Query: 237 YMYSRLHPDSSLYG-ILEHFLENAKLSENY---------FFANCEEVLKVATVIDQL--- 283
+ Y L D I + + + AK + + F + +K T+ D++
Sbjct: 487 FRYLSLFSDDIPQKLIFDRYFKLAKTTTPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLL 546
Query: 284 --PLRLHEKYLFCISPVDMNDD--ISSQGLTQFATNYSKKGIVQLR----EIFTPGTLQV 335
P+ H KY +P+ + + + +QG + I L+ EI G +
Sbjct: 547 GCPVLKHSKY----APLFIREIGCVIAQG--------KRLQIYDLKSVPLEILERG---I 591
Query: 336 PKTQAALRELESIHKVLDLYVWLSFR 361
P T+ L++LE +HK++ Y+W S R
Sbjct: 592 PTTETELQQLEQLHKLIVAYMWASIR 617
>gi|344302882|gb|EGW33156.1| hypothetical protein SPAPADRAFT_71052 [Spathaspora passalidarum
NRRL Y-27907]
Length = 693
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 227/405 (56%), Gaps = 29/405 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+G RG ++T ALLG+ A E+HLCG+ +AV L+++I+ VTGD+++++ +
Sbjct: 281 DICVIDEIQMIGDHQRGAAWTNALLGVLAKEIHLCGEESAVQLVKKIVAVTGDELEIKRF 340
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R L N + SF+ ++ GDC+V FS+ I LK IE + IVYGSLPPE R
Sbjct: 341 KRFGKLTVQN-RITSFTTLKKGDCVVAFSKKKILDLKNQIEQNTRLKVGIVYGSLPPEIR 399
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A FN+ E+DVLVASDAIGMGLNL I RI+F ++KKF+G +L+ L+ +VKQIAG
Sbjct: 400 SKEAQSFNNG--EYDVLVASDAIGMGLNLKIKRIVFQSVKKFNGKDLQGLSDSQVKQIAG 457
Query: 189 RAGRYGSK--FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 246
RAGRY +K G VT LD L + ++ +P LE A L+P ++ + + D+
Sbjct: 458 RAGRYFAKDGMQEGFVTALDMPTLKYVRNAMAKPVVQLEKAALWPT-PAVWKHHMANWDT 516
Query: 247 S--LYGILEHFLENA-KLSENYFFANCEEVLKVATVIDQL-PLRLHEK------YLFCIS 296
+ L F + KL +F + E+ K ++ P +LH+K
Sbjct: 517 NEPYLDTLYRFAKKVPKLKLKDYFISPMEIEKRCELLSMFKPGKLHDKIEIDDQITLSDV 576
Query: 297 PVDMNDDISS-------QGLTQFATNYSKKGI------VQLREIFTPGTLQVPKTQAALR 343
P+ + DD + + ATN S+ + ++L E+ + V + ++
Sbjct: 577 PLRLRDDHGGPVYNAMREMVESVATNKSRGLLHYSFIDLKLLEMEPSRSFDVDEPMQRVQ 636
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+LE +H ++ +++WLS R F D+E KA+ I E ++
Sbjct: 637 QLEIMHNLILVFMWLSQRFSTLFIDKESMYDLKALVEKRISEEMQ 681
>gi|389741138|gb|EIM82327.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 781
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 204/398 (51%), Gaps = 47/398 (11%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDEIQM+ RG S+T A+LG A+ELHLCG+ AVP+I+ + ++TGD++ V
Sbjct: 332 YDVVVIDEIQMITDSERGHSWTAAVLGTAASELHLCGEDTAVPIIEALAKMTGDELIVNR 391
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YERLSPL L G + + GDCIVTFSR I++LK A+E + C++ YG LPPE
Sbjct: 392 YERLSPLEVAEKSLEGDLTKVTKGDCIVTFSRSKIFQLKDAVEKKTGLKCAVAYGRLPPE 451
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R QA +FND SE VL+ SDAIGMGLNL I R+I S+M KFDG + L+ + KQI
Sbjct: 452 MRNEQARQFNDPDSEIGVLIGSDAIGMGLNLKIRRVIISSMAKFDGEKETRLSTSQTKQI 511
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA------GLFPNFDLIYMYS 240
AGRAGR+G + G T L DLPLL +++ PS L A G+F + +
Sbjct: 512 AGRAGRFGME-ASGIATTLHPADLPLLREAINAPSVPLRYARVGWLVGVFEG-----VMA 565
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEE-----VLKVATVIDQLPLRLHEKYLFCI 295
L P ++L E + + + + + + V V ++ LP+ E+ + +
Sbjct: 566 ALPPGTTLSTAREALIYASVVPTCFEMMDANDKSTNLVEFVDSIAKDLPIS--ERQMLSL 623
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP----------------------GTL 333
P D ++ L Y + V LR + G +
Sbjct: 624 CPFPFQDAVTRDILGSIYATYRDQAKVDLRRLLETDPHAQRILALLNQVLEAMEDPEGKI 683
Query: 334 QVPKT-----QAALRELESIHKVLDLYVWLSFRLEESF 366
+ T Q L ELES+HKVL Y WL +F
Sbjct: 684 KEEITMKTGWQQHLIELESLHKVLVAYSWLHMHRSLAF 721
>gi|421853095|ref|ZP_16285775.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478672|dbj|GAB30978.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 782
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 221/406 (54%), Gaps = 25/406 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
S D AVIDE QML RG ++T A++G A L++ G P +P++++I ++ GD +
Sbjct: 390 SPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPARHLYVLGAPDCIPMVRRIAELCGDPLDE 449
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S ER SPL + P+ +++ +GD ++ FSR + L+ A+ GK + ++VYG+L P
Sbjct: 450 ISLERKSPLRAASHPV-RLADLGSGDALIAFSRREVLDLRAALLQHGKRV-AVVYGALSP 507
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R +A RFND E D+LVA+DAIGMGLNL+I R++F+ +KK+DG + RDLTV EVKQ
Sbjct: 508 EVRRAEAQRFNDG--EADILVATDAIGMGLNLSIKRVVFAALKKYDGRQTRDLTVQEVKQ 565
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES---AGLFPNFDLIYMYSRL 242
I GRAGR+G K G V L P + LE P + P+ D++ +
Sbjct: 566 IGGRAGRFG-KHETGVVAVLAGAGSPTFIRRQLEADPEQPDDLRPYVQPDADIVKAVAAE 624
Query: 243 HPDSSLYGILE--HFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 299
SLYG+L H K NY ++ E+ +A+ ++ + L L ++ + + PVD
Sbjct: 625 IGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQAFAIASALEGVEGLDLTTRWSYAMCPVD 684
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLY 355
D+ + L +A +++ R + PGT ++P ++ A RE E HK L +
Sbjct: 685 DRDN-GIRRLVGWAADHAAG-----RRVLPPGTGRLPASERAGREELERAEKRHKRLVAW 738
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
WL+ R E +PDRE A + IE L Q+ R ++ T
Sbjct: 739 RWLALRFPEIYPDREEAEDTTRRLNDWIESVLR----QQSRTRRST 780
>gi|258541211|ref|YP_003186644.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041132|ref|YP_005479876.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049647|ref|YP_005476710.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052757|ref|YP_005485851.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055989|ref|YP_005488656.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058630|ref|YP_005497758.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061924|ref|YP_005482566.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118000|ref|YP_005500624.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849294|ref|ZP_16282276.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|256632289|dbj|BAH98264.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635346|dbj|BAI01315.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638401|dbj|BAI04363.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641455|dbj|BAI07410.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644510|dbj|BAI10458.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647565|dbj|BAI13506.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650618|dbj|BAI16552.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653609|dbj|BAI19536.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371459932|dbj|GAB27479.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 782
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 221/406 (54%), Gaps = 25/406 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
S D AVIDE QML RG ++T A++G A L++ G P +P++++I ++ GD +
Sbjct: 390 SPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPARHLYVLGAPDCIPMVRRIAELCGDPLDE 449
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S ER SPL + P+ +++ +GD ++ FSR + L+ A+ GK + ++VYG+L P
Sbjct: 450 ISLERKSPLRAASHPV-RLADLGSGDALIAFSRREVLDLRAALLQHGKRV-AVVYGALSP 507
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R +A RFND E D+LVA+DAIGMGLNL+I R++F+ +KK+DG + RDLTV EVKQ
Sbjct: 508 EVRRAEAQRFNDG--EADILVATDAIGMGLNLSIKRVVFAALKKYDGRQTRDLTVQEVKQ 565
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES---AGLFPNFDLIYMYSRL 242
I GRAGR+G K G V L P + LE P + P+ D++ +
Sbjct: 566 IGGRAGRFG-KHETGIVAVLAGAGSPTFIRRQLEADPEQPDDLRPYVQPDADIVKAVAAE 624
Query: 243 HPDSSLYGILE--HFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 299
SLYG+L H K NY ++ E+ +A+ ++ + L L ++ + + PVD
Sbjct: 625 IGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQAFAIASALEGVEGLDLTTRWSYAMCPVD 684
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLY 355
D+ + L +A +++ R + PGT ++P ++ A RE E HK L +
Sbjct: 685 DRDN-GIRRLVGWAADHAAG-----RRVLPPGTGRLPASERAGREELERAEKRHKRLVAW 738
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
WL+ R E +PDRE A + IE L Q+ R ++ T
Sbjct: 739 RWLALRFPEIYPDREEAEDTTRRLNDWIESVLR----QQSRTRRST 780
>gi|354546901|emb|CCE43633.1| hypothetical protein CPAR2_212770 [Candida parapsilosis]
Length = 716
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 229/417 (54%), Gaps = 50/417 (11%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+G RG +T A+LG+ A+E+HLCG+ +AVPLI++++++TGD+++V+ +
Sbjct: 306 DLCVIDEIQMIGDAQRGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLVEITGDELEVKKF 365
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L P S ++ GDC+V FS+ I K IE K ++YG+LPPE R
Sbjct: 366 DRLGKLTMEKKPT-SLKTLKKGDCLVVFSKRKILEYKCRIEQETKLKVGMIYGALPPEIR 424
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
++A RFN+ E+DVLVASDAIGMGLNL I+RI+FS + KF+G E+ +LT +VKQIAG
Sbjct: 425 AQEAARFNNG--EYDVLVASDAIGMGLNLKINRIVFSGINKFNGSEVENLTTSQVKQIAG 482
Query: 189 RAGRY----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--SRL 242
RAGR+ GS+ G VT L L + + L P LE A L+P DL++ Y +
Sbjct: 483 RAGRFSVEHGSR--EGLVTALQRSSLLYIKECLESPIAELEKACLWPT-DLVWKYYMTNY 539
Query: 243 HPDSSLYGILEHFLENAK--LSENYFFANCE------------EVLKVATVIDQLPLRLH 288
S L L F+ + S+ YF A+ E ++LK T+ DQL L
Sbjct: 540 STTSPLSETLSRFISSTSNFKSDLYFLADLEVKTGILDIISKDKLLKNMTIDDQLTL--S 597
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQ--LREIFTPGTLQVPKTQAA----- 341
E + P MN ++ + +F K IV+ + +F G L + A
Sbjct: 598 ETPISIHGP--MNRELVIPTVKKFF-----KTIVERSCKTVFDFGFLDLHLLSAKPMLNK 650
Query: 342 --------LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ +LES+HK++ L +WLS R F D++ A KA+ I E L +
Sbjct: 651 NIKIPLGNVEQLESMHKLILLSLWLSQRFPTLFIDKQSAMELKALVEKRITEELNNV 707
>gi|357030820|ref|ZP_09092764.1| putative RNA helicase [Gluconobacter morbifer G707]
gi|356415514|gb|EHH69157.1| putative RNA helicase [Gluconobacter morbifer G707]
Length = 812
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 218/390 (55%), Gaps = 24/390 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G P +PL++QI ++ D V
Sbjct: 387 DVAIIDEAQMLADPDRGAAWTAAIMGVPARHVFVLGAPDCIPLVRQIAELCDDPVDEIHL 446
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL V S +Q D ++ FSR + L+ + +RG+ + ++VYG+L PE R
Sbjct: 447 ERKSPLKADGVL--HLSELQPSDAVIAFSRREVLDLRAELMARGRRV-AVVYGALSPEVR 503
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN + E D+LVA+DAIGMGLNL+I RI+FS+++KFDG + RDLT EVKQI G
Sbjct: 504 RAEAARFN--AGEADILVATDAIGMGLNLSIRRIVFSSLRKFDGRQTRDLTSQEVKQIGG 561
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGRYG K G V L P + +L P P+ E L P+ D++ +
Sbjct: 562 RAGRYG-KHEQGLVCVLAEGGSPAFVRRMLSAPPEPVTELRPLVQPDSDIVRAVAEEIGS 620
Query: 246 SSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L ++ A L NY A+ E+ L++A ++ + L L ++ + + P+D
Sbjct: 621 DSLYGVLTR-IKRAVLRPDDPNYRLADMEQALEIAAALEGVEDLDLSTRWTYAMCPIDER 679
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ Q L Q+A +++ R + PGT ++P + A RE E HK L + W
Sbjct: 680 DN-GIQRLVQWAADHAAG-----RRVPPPGTGRLPHPEQAGREELERAEKRHKRLVAWRW 733
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L+ R E++P R+ A +I + IE+ L
Sbjct: 734 LALRFPEAYPARDDAEINTSILNDWIEQVL 763
>gi|329114819|ref|ZP_08243576.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695950|gb|EGE47634.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 782
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 220/406 (54%), Gaps = 25/406 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
S D AVIDE QML RG ++T A++G A L++ G P +P++++I ++ GD +
Sbjct: 390 SPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPARHLYVLGAPDCIPMVRRIAELCGDPLDE 449
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S ER SPL + P+ +++ GD ++ FSR + L+ A+ GK + ++VYG+L P
Sbjct: 450 ISLERKSPLRAASHPV-RLADLGAGDALIAFSRREVLDLRAALLQHGKRV-AVVYGALSP 507
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R +A RFND E D+LVA+DAIGMGLNL+I R++F+ +KK+DG + RDLTV EVKQ
Sbjct: 508 EVRRAEAQRFNDG--EADILVATDAIGMGLNLSIKRVVFAALKKYDGRQTRDLTVQEVKQ 565
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES---AGLFPNFDLIYMYSRL 242
I GRAGR+G K G V L P + LE P + P+ D++ +
Sbjct: 566 IGGRAGRFG-KHETGVVAVLAGAGSPTFIRRQLEADPEQPDDLRPYVQPDADIVKAVATE 624
Query: 243 HPDSSLYGILE--HFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 299
SLYG+L H K NY ++ E+ +A+ ++ + L L ++ + + PVD
Sbjct: 625 IGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQAFAIASALEGVEGLDLTTRWSYAMCPVD 684
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLY 355
D+ + L +A +++ R + PGT ++P ++ A RE E HK L +
Sbjct: 685 DRDN-GIRRLVGWAADHAAG-----RRVLPPGTGRLPPSERAGREELERAEKRHKRLVAW 738
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVT 401
WL+ R E +PDRE A + IE L Q+ R ++ T
Sbjct: 739 RWLALRFPEIYPDREEAEDTTRRLNDWIESVLR----QQSRTRRST 780
>gi|409046629|gb|EKM56109.1| hypothetical protein PHACADRAFT_63855, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 532
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 215/397 (54%), Gaps = 20/397 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AV+DEIQM+ RG +++ ALL + A E+HLCG+ AVP+++ I++ TGD+++V
Sbjct: 133 YDVAVVDEIQMIADPERGPAWSSALLSLNAKEIHLCGEETAVPVVESIVRDTGDELEVNR 192
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RLSPL L G FS + GDC + FSR I+ +KK IE K C++ YG LPPE
Sbjct: 193 YQRLSPLTVAQESLNGDFSKARKGDCFIAFSRSRIFEVKKEIERATKMKCAVAYGRLPPE 252
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
RT QA+ FN + +D++V +DAIGMGLNL I RI+F T K++G E+ L++ +KQI
Sbjct: 253 LRTEQASLFNKPDTGYDIMVGTDAIGMGLNLKIKRIVFDTTTKWNGHEMAPLSLSSIKQI 312
Query: 187 AGRAGRYG---SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
AGRAGR+G G T L DLP++ +L + ++ A + P + ++
Sbjct: 313 AGRAGRFGMHDDNDASGVATTLWENDLPVVADALRATAQPIKYARIHPTQERFEQVVQVL 372
Query: 244 PDSSLYGILEH-FLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDM 300
P + E F +++ ++ N ++ + ++D+ L L +++L ++P+
Sbjct: 373 PAGTPLSAAELVFGYVSRIHPSFEMQNVRDIAQAFDIVDKTAGGLTLGDRHLLRLAPIQW 432
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ--VPKTQAA-----------LRELES 347
D + + Y++ V R++ +Q + + + A L LE
Sbjct: 433 RDPEMLEMTSHLIRIYTQSLAVDYRQLLKATGVQKILKEIEDAECMGNRPPAWGLSALEL 492
Query: 348 IHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIE 384
HKV+ +Y+WLS+R +F R A K L+E
Sbjct: 493 AHKVVIVYLWLSYRNPVAFSQRTQMAEVKHKMEKLME 529
>gi|365757986|gb|EHM99853.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 648
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 232/414 (56%), Gaps = 20/414 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 222 MVPINQKFDVVVLDEIQMMSDVDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 281
Query: 61 DDVKVQSYERLSPLVPLNVP-LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L + P + ++ GDC+V FS+ I LK IE +++
Sbjct: 282 DKLTINEYERLGKLTVEDKPVVDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVI 341
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA+ FN E+DV+VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 342 YGSLPPETRVQQASLFNKG--EYDVMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 399
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 400 SSQIKQIGGRAGRFKSRSTSDDIPQGFITSFESKVLKSIRKAIESPVEYLKTAVTWPTDE 459
Query: 235 L-IYMYSRLHPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLP-LRLHEK 290
+ ++ ++ P + +L+ + + S + F ++ + +K+ + +Q+ + +K
Sbjct: 460 ICAHLMTQFPPGTPASALLQTISDELEKSSDKLFTLSDLKNKVKIIGLFEQMEDIPFLDK 519
Query: 291 YLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALREL 345
+PV DM + + T+F +K+ L P L +P +L
Sbjct: 520 LKLSNAPVKDM--PMVTNAFTKFCETIAKRHTRGLLSYQLPFNLLNYNCIPNESYSLEVY 577
Query: 346 ESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
ES++ ++ LY WLS R F D E A K C M+I E L+RL + P +K
Sbjct: 578 ESLYNIITLYFWLSNRYPNYFIDMESARDMKYFCEMIIFEKLDRLK-KNPYARK 630
>gi|401840253|gb|EJT43151.1| SUV3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 737
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 232/414 (56%), Gaps = 20/414 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDVDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVP-LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L + P + ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLTVEDKPVVDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA+ FN E+DV+VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQASLFNKG--EYDVMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSTSDDIPQGFITSFESKVLKSVRKAIESPVEYLKTAVTWPTDE 548
Query: 235 L-IYMYSRLHPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLP-LRLHEK 290
+ ++ ++ P + +L+ + + S + F ++ + +K+ + +Q+ + +K
Sbjct: 549 ICAHLMTQFPPGTPASALLQTISDELEKSSDKLFTLSDLKNKVKIIGLFEQMEDIPFLDK 608
Query: 291 YLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALREL 345
+PV DM + + T+F +K+ L P L +P +L
Sbjct: 609 LKLSNAPVKDM--PMVTNAFTKFCETIAKRHTRGLLSYQLPFNLLNYNCIPNESYSLEVY 666
Query: 346 ESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
ES++ ++ LY WLS R F D E A K C M+I E L+RL + P +K
Sbjct: 667 ESLYNIITLYFWLSNRYPNYFIDMESARDMKYFCEMIIFEKLDRLK-KNPYARK 719
>gi|365857845|ref|ZP_09397822.1| helicase protein [Acetobacteraceae bacterium AT-5844]
gi|363715418|gb|EHL98863.1| helicase protein [Acetobacteraceae bacterium AT-5844]
Length = 777
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 218/388 (56%), Gaps = 20/388 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A++DE Q+L + RG ++T A++G+ A E+ + G P A+P++++I + GDDV+ S
Sbjct: 389 DVAIVDEAQLLHDRDRGAAWTAAIMGVPAREVFVLGAPEAIPMVERIAALCGDDVEKVSL 448
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER PL P+ ++++ GD ++ FSR + ++ + RG+ + +++YG+L PE R
Sbjct: 449 ERKGPLRAATNPV-RLADLRPGDALIAFSRRDVLDMRAELVRRGRRV-AVIYGALSPEVR 506
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RF + E D++VA+DAIGMGLNL I R+IF+T+KKFDG RDL E+KQI G
Sbjct: 507 RAEAARFRN--GEADIVVATDAIGMGLNLPIRRVIFTTLKKFDGEARRDLNAQEIKQIGG 564
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGRYG KF G V+ L P + +L P P E L P+ D+I +
Sbjct: 565 RAGRYG-KFEEGVVSVLAGAGSPDFVRHMLNAPPQPPEELRPLVQPDADIIANVAAEIGS 623
Query: 246 SSLYGILEHFLENA-KLSE-NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 303
SL+G+L +L + NY A+ + +A+ ID + L L +++ + + PVD D+
Sbjct: 624 DSLFGVLARIRRAVLRLDDPNYRLADLTQAQSIASAIDGVGLSLMDRWTYAMCPVDERDN 683
Query: 304 ISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELESIHKVLDLYVWLS 359
++ L ++A +++ R + P ++P + A L+ E +HK L + WL+
Sbjct: 684 GITR-LARWAVDHAAG-----RAVIPPSAGRLPPPEQATGEELQRGEKVHKRLVAWRWLA 737
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFL 387
R ++PD + A + A IE+ L
Sbjct: 738 LRFPVAYPDFDRAEVETARLDRWIEDVL 765
>gi|260941850|ref|XP_002615091.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
gi|238851514|gb|EEQ40978.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
Length = 716
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 149/412 (36%), Positives = 222/412 (53%), Gaps = 47/412 (11%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +IDEIQML TRG ++T A+LG+ A E+HLCG+ +AV L++++++ TGD++ ++ Y
Sbjct: 302 DICIIDEIQMLADPTRGSAWTNAVLGVQAKEVHLCGEESAVALVKEMVKSTGDELVIKQY 361
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L P+G N+Q GDC++ FS+ I LK IE ++YG+LPPE R
Sbjct: 362 KRLGKLTMCQKPVGRLENLQKGDCLIAFSKRKILELKCRIEQSTSLKVGVIYGALPPEIR 421
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
++ + +FN S E+DVLVASDAIGMGLNL I RI+F ++ KF+G ++ L+V KQIAG
Sbjct: 422 SQASAKFN--SGEYDVLVASDAIGMGLNLKIKRIVFWSIMKFNGSDMVPLSVSATKQIAG 479
Query: 189 RAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFP--NFDLIYMYSRLH- 243
RAGR+ + E VT S+DL L ++ EP +E A ++P F + Y+ S
Sbjct: 480 RAGRFSADQGESEGLVTAFKSKDLRFLQLAMREPIKNVEKACIWPPSEFWVHYVSSFRSP 539
Query: 244 -PDSSLYGILEHFLENAKLSENYFFANCEEVLKV------------ATVIDQL-----PL 285
P S E + N KL +NYF + + L++ T+ DQL PL
Sbjct: 540 LPLSEAVKKFEKSIGNRKL-DNYFLSEFDHQLEILDLLLRNRLSKSLTIEDQLSLASVPL 598
Query: 286 RLH----------EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV 335
LH K+ CIS + T F ++ I+ + T + +V
Sbjct: 599 NLHFAPPVVVETALKFFECISRCESK--------TVFDFDFLHSSILSMEPSITGSSERV 650
Query: 336 PKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
T L+ LE+ HK++ +++WLS R F D+E A K + I E L
Sbjct: 651 FDT---LQALETNHKLVLVFMWLSQRWPTLFADKESANDIKTLIEKRISEEL 699
>gi|34582378|sp|O74727.1|SUV3_SACDO RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|3688566|emb|CAA09716.1| suv3 protein [Saccharomyces douglasii]
Length = 737
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HL G+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDADRGWAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L + P+ ++ GDC+V FS+ + LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEDKPVKDGIKGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ SK P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSKSTSGGVPQGFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE + S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSDLLQTISDELERS--SDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|323302785|gb|EGA56591.1| Suv3p [Saccharomyces cerevisiae FostersB]
Length = 648
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 222 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 281
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 282 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 341
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 342 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 399
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 400 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 459
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 460 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 517
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 518 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 575
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 576 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 622
>gi|308451181|ref|XP_003088574.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
gi|308246503|gb|EFO90455.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
Length = 691
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 200/353 (56%), Gaps = 9/353 (2%)
Query: 39 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 98
E+HLCG+PAA+ +++++L+ G+ V+++ Y+R SPL + + S+SNI+ GDCIV FS+
Sbjct: 273 EIHLCGEPAAIDIVKKLLEPIGETVEIRYYDRKSPLTIADKAIESYSNIEPGDCIVCFSK 332
Query: 99 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 158
A++ K +E G +++YG LPP T+ QA +FND E VLVA+DAIGMGLNLN
Sbjct: 333 KAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECSVLVATDAIGMGLNLN 391
Query: 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 218
I R+IF++ + EL L QIAGRAGR+G+ + G T + EDL L L
Sbjct: 392 IRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTMRKEDLGTLKTILA 447
Query: 219 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 278
E + + G+ P +D I +S P +S +L+ F+ +S+++F ++ ++A
Sbjct: 448 EKVEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAV 507
Query: 279 VIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT 338
+IDQ+PL L +Y FC SP++ +D ++ + A ++ G E PK
Sbjct: 508 LIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA-TGQALTYEWLMDMLEWPPKP 566
Query: 339 QAALRE---LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+ L E LE +++LD Y+WLS R + PD I +I+E +E
Sbjct: 567 ASTLSELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKILDTMIQEGVE 619
>gi|6325228|ref|NP_015296.1| Suv3p [Saccharomyces cerevisiae S288c]
gi|2506501|sp|P32580.2|SUV3_YEAST RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|1039448|gb|AAB68158.1| Suv3p: mitochondrial ATP-dependent DExH box helicase [Saccharomyces
cerevisiae]
gi|190407918|gb|EDV11183.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Saccharomyces cerevisiae RM11-1a]
gi|285815508|tpg|DAA11400.1| TPA: Suv3p [Saccharomyces cerevisiae S288c]
gi|392295982|gb|EIW07085.1| Suv3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 737
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|323335091|gb|EGA76381.1| Suv3p [Saccharomyces cerevisiae Vin13]
Length = 737
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|151942764|gb|EDN61110.1| suppressor of var1 [Saccharomyces cerevisiae YJM789]
gi|256270509|gb|EEU05693.1| Suv3p [Saccharomyces cerevisiae JAY291]
Length = 737
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGDVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|255724706|ref|XP_002547282.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135173|gb|EER34727.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 738
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 226/412 (54%), Gaps = 34/412 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG +T A+LG+ A+E+HLCG+ +AVPLIQ+I+++TGD+++V+ +
Sbjct: 314 DLCVIDEIQMIADSRRGSVWTNAVLGVLAHEIHLCGEESAVPLIQKIVEITGDELEVKHF 373
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L + S ++ GDC+V FS+ I K IE + +VYG+LPPE R
Sbjct: 374 KRLGKLT-VEKTSTRLSQLKKGDCLVAFSKRKIMDYKCRIEQESRLKVGVVYGALPPEIR 432
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A +FN E+DVLVASDA+GMGLNL I+R++FS + K+DG +++LTV +VKQIAG
Sbjct: 433 SQEAAKFNRG--EYDVLVASDAVGMGLNLKINRVVFSGISKYDGSVVKNLTVSQVKQIAG 490
Query: 189 RAGRY----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI--YMYSRL 242
RAGRY GSK G VT L L + + L EP L+ A ++P ++ YM +
Sbjct: 491 RAGRYSKDTGSK--EGFVTALQRSSLVYIQECLREPVSYLQQACIWPTNNIWRNYMVNGR 548
Query: 243 HPDSSLYGILEHFLENAKLSEN--YFFANCEEVLKVATVIDQLP----LRLHEKYLFCIS 296
L +L + + + YF + ++ +++ +I + + ++ C +
Sbjct: 549 TDKVQLSDVLRSYFSTMLTTRHGLYFVSEWDQKVELLDLISSDKHLSRMSIDDQLTLCET 608
Query: 297 PVDMNDDISSQGLTQFATNYSK-------KGIVQLR----EIFTPGTLQVPKTQAALR-- 343
P+ + SQ + Q ++ K K I + E+ + + L+
Sbjct: 609 PIGLAKAKGSQVMLQAVHDFFKTIVDRDCKSIFDYKFLDLELISQRAVINSDLNVTLKNV 668
Query: 344 -ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL---ERLG 391
LE++HK+L L++WLS R F D+E A K + I E L ERL
Sbjct: 669 DNLENMHKMLLLFMWLSQRFPTLFIDKESALEMKVLVEKRITEELTNIERLN 720
>gi|172798|gb|AAA35135.1| SUV3 [Saccharomyces cerevisiae]
Length = 737
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLD 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>gi|190345490|gb|EDK37387.2| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 217/410 (52%), Gaps = 43/410 (10%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG ++T A+LG+ A +H+CG+ +AVPLI+++ +TGD++++++Y
Sbjct: 155 DTCVIDEIQMIADDRRGSAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTY 214
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERL L L S + GDC++ FS+ I LK IE K ++YG+LPPE R
Sbjct: 215 ERLGKLTVAQKELHSLKKLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIR 274
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A FN S ++D+LVASDA+GMGLNL I R++F T KF+G E LT KQIAG
Sbjct: 275 SKEANGFN--SGQYDILVASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAG 332
Query: 189 RAGRY--GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPD 245
RAGR+ G G VT L ++DL + K + EP+ L A ++P + +Y S+
Sbjct: 333 RAGRFSAGKGQSEGFVTALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQG 392
Query: 246 SSLYGILEHFL-ENAKLSENYFFAN-------------CEEVLKVATVIDQLPLRLHEKY 291
+S Y IL F E A + + FF +++ K + DQL L L
Sbjct: 393 TSFYEILSQFAHETADVKMSDFFVTELDERFDILKLFLKKDLFKKTMIEDQLTLSL---- 448
Query: 292 LFCISPVDMNDDISSQGLTQFATNY-------SKKGIVQLREIFTPGTLQVPK------- 337
+P+++ ++S+ + A ++ K I + T Q P+
Sbjct: 449 ----APINIR--MASKLIVDTAFDFFETISKCETKTIFDFHFLHTKLLEQEPRKSTTAEE 502
Query: 338 TQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
T LR LE HK++ +++WLS R F D+E A K + I E L
Sbjct: 503 TVERLRLLEENHKLVLIFLWLSQRWPTLFVDKESATDVKTLIEKRISEEL 552
>gi|365987095|ref|XP_003670379.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
gi|343769149|emb|CCD25136.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
Length = 761
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/413 (35%), Positives = 223/413 (53%), Gaps = 20/413 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ + RG+++T ALLG+ A E+HLCG+ +A+PLI +I+++TG
Sbjct: 338 MIPLNKKFDVIVLDEIQMMNDEDRGWAWTNALLGVQAREVHLCGEKSALPLISKIIKLTG 397
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L V V +++ GDCIV FS+ I LK IE++ +++
Sbjct: 398 DRLTINEYERLGELKVESEVLKRGLYSLRKGDCIVAFSKKKILDLKLQIEAKTNLKVAVI 457
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E VLVASDAIGMGLNL+I RIIF+T K++G EL LT
Sbjct: 458 YGSLPPETRVQQAQLFNEG--ECHVLVASDAIGMGLNLSIDRIIFTTDLKYNGKELMKLT 515
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
+KQI GRAGR+ G+ +G ++ L +E L + + + P L+ A ++P +
Sbjct: 516 NSNIKQIGGRAGRFKFEGNGPAIGSISSLHTEVLDSVKEGIEAPIEYLKKAVIWPTDKIC 575
Query: 237 -YMYSRLHPDSSLYGILEHFLENAKLSENYFFA-----NCEEVLKVATVIDQLPLRLHEK 290
+ R P + + +L+ + + N F N V+K+ ++ +P +K
Sbjct: 576 EQLMIRFPPGTKVGVLLQTLSDQLEAGSNKLFKVSGLDNKFNVIKLFEDMEDIPFL--DK 633
Query: 291 YLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL----QVPKTQAALRELE 346
+PV N + + +QF SKK L P + + L E
Sbjct: 634 LKLSNAPVK-NLPMVQEAFSQFCLTISKKETRTLLSYPFPFYILQYKNITNDDYGLERYE 692
Query: 347 SIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
+++ ++ L+ WLS R F D E A K C M+I E L RL + P ++K
Sbjct: 693 ALYNIIMLFFWLSNRYPNYFVDLESATDLKHFCEMMIFEKLNRLS-KNPYIRK 744
>gi|149248272|ref|XP_001528523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448477|gb|EDK42865.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 739
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 233/412 (56%), Gaps = 37/412 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ + RG +T A+LG+ A E+HLCG+ +AVPLI+++++ TGDD++++ +
Sbjct: 325 DLCVIDEIQMIQDEQRGSVWTNAVLGVLAREIHLCGEESAVPLIEKLVKYTGDDLEIKRF 384
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R+ L + P+ +S ++ GDC+V F++ I K +E +VYG LPPE R
Sbjct: 385 KRMGKLTVESQPVDLYS-LRKGDCLVAFAKRKILEYKSKLEKNTNLRVGVVYGGLPPEIR 443
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
++A +FN + ++DVLVASDA+GMGLNL I RI+FS+ K++G EL++LT +VKQIAG
Sbjct: 444 AQEAEKFN--TGKYDVLVASDAVGMGLNLKIKRIVFSSTNKYNGTELKNLTPSQVKQIAG 501
Query: 189 RAGRY----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP 244
RAGR+ GS+ G VT L E L + K++ P L A ++P+ +L++ + +
Sbjct: 502 RAGRFSVEKGSQ--EGFVTALTRESLVFIKKNMDTPIEYLSRARIWPS-ELVWKHYMANQ 558
Query: 245 DS--SLYGILEHFL-ENAKLS-ENYFFANCEEVLKVATVI-DQLPLR---LHEKYLFCIS 296
+ SLY FL E K E+Y + L++ +I D LR ++++++ +
Sbjct: 559 STTESLYETFTRFLSEKMKFEHEDYELSEVAPKLEILQIISDDKYLRNMTINDQFVLAET 618
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIV--QLREIFTPGTLQVP----------------KT 338
P+++ + ++ L Q + +V Q R IF LQ P T
Sbjct: 619 PINLRGVLGNE-LIQPIIKMFLQNVVDRQSRTIFEFSLLQDPLIIEVLSSRPILKSVEST 677
Query: 339 QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ LE+IHK++ +++WLS R F D++ A KA+ + E L L
Sbjct: 678 MENVEILEAIHKLVLVFLWLSQRYSTLFIDKQSATELKALVEKRLSEELRNL 729
>gi|156087308|ref|XP_001611061.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
gi|154798314|gb|EDO07493.1| ATP-dependent RNA helicase, putative [Babesia bovis]
Length = 678
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 221/413 (53%), Gaps = 31/413 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + DY CAVIDE+QM+G RGF++TRA LG+ ELH+CG + L + + G
Sbjct: 242 MTQLNRDYGCAVIDEMQMIGDSNRGFAWTRAFLGLRTPELHICGSTSCYLLAKSFCNMAG 301
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESR-----GKHL 115
D ++V+ + RL + L+ P+ S++ GDCIV F+R+ R+ AIE + G
Sbjct: 302 DLLEVKEHTRLGTVSILDEPV-KISDLLPGDCIVCFARNTALRIATAIERQCFKNDGSKP 360
Query: 116 CS--IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 173
S ++YGSLPPETR +Q FN S + +LVASD IGMG+N+ I R+IF ++ K+DG
Sbjct: 361 ASTVVIYGSLPPETRKQQINDFN--SRKKQILVASDVIGMGVNVRIKRVIFHSLTKYDGS 418
Query: 174 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
R LT EV+QIAGRAGRY G V C +D+ L + + LESA + P+
Sbjct: 419 RYRMLTAAEVQQIAGRAGRYSLNCGNGYVGCTREDDIVHLKRLMRRKEDQLESAYIAPST 478
Query: 234 DLIYMY-----SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ--LPLR 286
D + + P +L ++ + A+ ++ + + + +LKVA + Q LP R
Sbjct: 479 DTLSAFIDAVRGVTDPPGTLSECIKIYRSMAQSTQMFKLLDMKSILKVANALSQIELPTR 538
Query: 287 LHEKYLFCISPVDMNDDISSQ-GLTQFATNYSKKGIVQLREIFTPGTLQ---------VP 336
+YLF V + + Q L FA ++S V+LR + ++ V
Sbjct: 539 TIVEYLF----VPLGSQPALQLILRTFALSHSVVNNVKLRNVIHEDAMELLENCENFTVQ 594
Query: 337 KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ +R+LE ++++LD YVWL ++ + + D AAS K + + E LE+
Sbjct: 595 NIKEHIRQLEMLYQILDAYVWLGYKFPDVYVDHVAAASVKGKIARTLHERLEQ 647
>gi|345570647|gb|EGX53468.1| hypothetical protein AOL_s00006g334 [Arthrobotrys oligospora ATCC
24927]
Length = 821
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 224/458 (48%), Gaps = 68/458 (14%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + D AVIDEIQML RG+++T+A+LG+ A ELHLCG+ AV +++++ ++ G
Sbjct: 295 MAQLETQLDVAVIDEIQMLSDPERGWAWTQAVLGLMAKELHLCGEERAVGIVEKLARLCG 354
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
DD+ + Y+RL L +N L G FS I+ GDCIV FSR I+ LK+ +E C+IV
Sbjct: 355 DDLVIHRYQRLGKLQVMNESLNGDFSKIEKGDCIVGFSRKDIHTLKRFVEQVTGLKCAIV 414
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LP ETR QA FND + +DVLVASDAIG+GLNL+I R+IFSTM KF+G E +++
Sbjct: 415 YGALPAETRATQAKYFNDPKNNYDVLVASDAIGLGLNLSIKRVIFSTMFKFNGQENVEIS 474
Query: 180 VPEVKQIAGRAGRY-------------------------------------------GSK 196
+P +QIAGRAGRY SK
Sbjct: 475 IPLTRQIAGRAGRYRSAADDAKKNPDRAPAPAAKVENKESWDPTIDVGVAPPTPATSESK 534
Query: 197 FP-----VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-HPDSSLYG 250
P +G T DL +L ++ P +E A + P+ + Y L + +
Sbjct: 535 GPPLDSKIGYATTFVKRDLDILRNNMETEPPEIEQAIVLPSNTVFENYCALFKAGTPFHE 594
Query: 251 ILEHFLENAKLSENYFFANCEEVLKVATVIDQL------------PLRLHEKYLFCISPV 298
+L A + + F N + +++VA +++ L EK + +PV
Sbjct: 595 MLSKIASQASVDSLFKFTNIKPMIEVARLLEPTESEKSEGEVALSKLSDMEKIVLSSAPV 654
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAAL--RELESIHKVL 352
N + + +FA ++ L R++ L + A+ + LE +H V+
Sbjct: 655 KTNVESCIKAFREFAKLIAQGKRSTLLTISRDVVDIEALDIEAQDPAMMIKRLEELHTVI 714
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
LY W S R + + K I+E ++RL
Sbjct: 715 MLYSWCSQRFHHVLTGHMIVSELKHATEKKIDEAMKRL 752
>gi|296114989|ref|ZP_06833633.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978451|gb|EFG85185.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 814
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 21/389 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD V
Sbjct: 395 DVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLFILGAPDCIPMVRRIAELCGDPVDEVHL 454
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPLV ++P+ ++Q D ++ FSR + L+ + + G+ + ++VYG+L PE R
Sbjct: 455 ERKSPLVAADMPV-RIQDLQPHDALIAFSRREVLDLRALLLAHGRRV-AVVYGALSPEVR 512
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN E D+L+A+DAIGMGLNL I R++F+ ++KFDG + RDL EVKQI G
Sbjct: 513 RAEAQRFN--RGEADILIATDAIGMGLNLTIRRVVFAALRKFDGTQTRDLNAQEVKQIGG 570
Query: 189 RAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPD 245
RAGR+G K G V+ L+ P +H L P L+ + P+ D++ +
Sbjct: 571 RAGRFG-KHEKGIVSVLEGVGSPSFIHAMLAAPPAQLDDLRPQVQPDADIVQAVAAEIGS 629
Query: 246 SSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SL+G+L + NY AN E+ +AT ++ + L L +++++ + PVD D
Sbjct: 630 DSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAIATALEGVEGLTLAQRWVYAMCPVDDRD 689
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESI---HKVLDLYVWL 358
+ Q L +A +++ V PGT ++P + A R ELE HK L + WL
Sbjct: 690 N-GIQRLVGWAADHAAGHAVP-----PPGTGRLPPAERAERSELERAEKRHKRLVAWRWL 743
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFL 387
+ R +++PDRE A + IEE L
Sbjct: 744 ALRFPDAYPDRENAEIATTRLNDWIEEVL 772
>gi|390366013|ref|XP_001200039.2| PREDICTED: uncharacterized protein LOC763911 [Strongylocentrotus
purpuratus]
Length = 1104
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 198/383 (51%), Gaps = 60/383 (15%)
Query: 11 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
AVIDEIQML +RG+++TRALL
Sbjct: 125 AVIDEIQMLRDPSRGWAWTRALLD------------------------------------ 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+ N++ GDCIV FS++ +Y + + + S GK C+++YGSLPP +
Sbjct: 149 ------------NLENVKPGDCIVAFSKNDLYSISRQLFSMGKE-CAVIYGSLPPGAKLS 195
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQ 185
QA +FND +LVA+DAIGMGLNL+I R+IF ++ + E+ LT + Q
Sbjct: 196 QAAKFNDPDDPCKILVATDAIGMGLNLSIKRVIFKSLIRPYINEKGEKEMHRLTTSQALQ 255
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
IAGRAGR+ ++F GE T +DLPLL + L P +E+ GL P + I +++ PD
Sbjct: 256 IAGRAGRFRTQFEEGEATTFHGDDLPLLKEILANPVEKIEAGGLHPTAEQIELFAYHLPD 315
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
++L ++E F+ + + +NYF N ++ +A +I +PL L +Y+FC +P++
Sbjct: 316 ATLSNLIEIFINLSIVEKNYFVCNVDDFKFLADMIQHVPLHLRARYVFCCAPINRKLPFI 375
Query: 306 SQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFR 361
+FA YS+ + R + P L VPK L LE++H V+DLY+WLS+R
Sbjct: 376 CTMFLKFARQYSRNQPITFDWFCRSVGWP--LAVPKNIRDLMHLEAVHDVMDLYLWLSYR 433
Query: 362 LEESFPDRELAASQKAICSMLIE 384
+ FPD L +A +I+
Sbjct: 434 FMDMFPDTALIQDVQAELDHIIQ 456
>gi|340777408|ref|ZP_08697351.1| RNA helicase [Acetobacter aceti NBRC 14818]
Length = 812
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 226/406 (55%), Gaps = 27/406 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L++ G P +P++++I ++ GD + S
Sbjct: 422 DVAIIDEAQMLFDPDRGAAWTAAIMGAPARHLYILGAPECIPMVRRIAELCGDPIDEISL 481
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R SPL + P+ + +++GD ++ FSR + L+ A+ RG+ + ++VYG+L PE R
Sbjct: 482 QRKSPLKAASAPV-RLNELKSGDALIAFSRREVLDLRAALMERGRRV-AVVYGALSPEVR 539
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN ++ D+L+A+DAIGMGLNL+I R++F+ ++KFDG + RDLT+ EVKQI G
Sbjct: 540 RAEAQRFNSGAA--DILIATDAIGMGLNLSIRRVVFAALRKFDGRQTRDLTIQEVKQIGG 597
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLL--EPSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGRYG K G V L P + L +P P E L P+ D++ +
Sbjct: 598 RAGRYG-KHEEGIVAVLADAGSPRFIRDHLNADPVPPDELRPLVQPDADIVRAIATEIGS 656
Query: 246 SSLYGILEHFLENAKLSE---NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L + A L NY ++ E+ +A+ ++ + L L +++ + + PVD
Sbjct: 657 DSLYGVLAR-IRRAVLRHDDPNYRLSDMEQPFAIASALEGVEGLDLTQRWTYAMCPVDDR 715
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ S+ L +A +++ I PGT ++P A RE E HK L + W
Sbjct: 716 DNGISR-LVGWAADHAAGA-----RIPPPGTGRLPAPDRAGREELERAEKRHKRLVAWRW 769
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
L+ R E++PD E A + + E++E + Q+ R +K R
Sbjct: 770 LALRFPETYPDLESAED----TTRKLNEWIESVLRQQSRTRKQKER 811
>gi|146419707|ref|XP_001485814.1| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 216/402 (53%), Gaps = 27/402 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG ++T A+LG+ A +H+CG+ +AVPLI+++ +TGD++++++Y
Sbjct: 155 DTCVIDEIQMIADDRRGSAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTY 214
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERL L L + GDC++ FS+ I LK IE K ++YG+LPPE R
Sbjct: 215 ERLGKLTVAQKELHLLKKLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIR 274
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A FN S ++D+LVASDA+GMGLNL I R++F T KF+G E LT KQIAG
Sbjct: 275 SKEANGFN--SGQYDILVASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAG 332
Query: 189 RAGRY--GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPD 245
RAGR+ G G VT L ++DL + K + EP+ L A ++P + +Y S+
Sbjct: 333 RAGRFSAGKGQLEGFVTALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQG 392
Query: 246 SSLYGILEHFLE---NAKLSENYFFANCEE---VLKVATVIDQLPLRLHEKYLFCISPVD 299
+S Y IL F + K+S ++F +E +LK+ D + E L +S
Sbjct: 393 TSFYEILSQFAHETADVKMS-DFFVTELDERFDILKLFLKKDLFKKTMIEDQL-TLSLAP 450
Query: 300 MNDDISSQGLTQFATNY-------SKKGIVQLREIFTPGTLQVPK-------TQAALREL 345
+N ++S+ + A ++ K I + T Q P+ T LR L
Sbjct: 451 INIRMASKLIVDTAFDFFETISKCETKTIFDFHFLHTKLLEQEPRKSTTAEETVERLRLL 510
Query: 346 ESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
E HK++ +++WLS R F D+E A K + I E L
Sbjct: 511 EENHKLVLIFLWLSQRWPTLFVDKESATDVKTLIEKRISEEL 552
>gi|443894136|dbj|GAC71486.1| mitochondrial RNA helicase SUV3 [Pseudozyma antarctica T-34]
Length = 853
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 191/335 (57%), Gaps = 21/335 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+G RGF++T A+LG+ A ELHLCG+ + +PLI+++ + GD + + Y
Sbjct: 379 DVGVIDEIQMIGDAQRGFAWTAAVLGLPAKELHLCGEASVIPLIEKLAEACGDHLTIHRY 438
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERL+PL + L + I+ GDCIV FSR I+ LK+ IE + C++ YG+LPPET
Sbjct: 439 ERLTPLSVADESLHNDLARIERGDCIVAFSRSGIFALKREIEQKTGLRCAVAYGALPPET 498
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
+ QA FN+ + DV+VASDAIGMGLNL I R++F T+ K++G E L+ ++KQIA
Sbjct: 499 KAEQAKLFNEG--KLDVMVASDAIGMGLNLRIKRVVFDTLTKWNGSEEVTLSASQIKQIA 556
Query: 188 GRAGRYGSKFPV-------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
GRAGRYG++ G VT +L +L +L P + A + P + + S
Sbjct: 557 GRAGRYGTQSASTKPADLGGIVTTRHEHELEVLRAALASPLRPITRAAIQPPREALSQLS 616
Query: 241 RL----HPDSSLYGILEHFLENAKLSE----NYFFANCEEVLKVATVIDQLP---LRLHE 289
+ P L + + + + A L+ +YF A+ + L ++ +++ L + E
Sbjct: 617 AMLPSAKPGGGLRALSQLYADVALLARIEAAHYFVADFSQQLAISPLVESASAGMLTVAE 676
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 324
+ F +P +M D+ LT +S+ G+V+
Sbjct: 677 RETFSNAPANMRDERVVAFLTSAVAQFSRGGLVRF 711
>gi|343425881|emb|CBQ69414.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 884
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 225/459 (49%), Gaps = 75/459 (16%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D V+DEIQM+G RG+++T A+LG+ A ELHLCG+ + +PLI+ + GD + V Y
Sbjct: 408 DVGVVDEIQMIGDAQRGYAWTNAVLGLPAKELHLCGEASVIPLIEHMAAACGDHLTVHRY 467
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERL+PL + L + I+ GDCIV FSR I+ LK+ IE R C++ YG+LPPET
Sbjct: 468 ERLTPLSVADESLHDDLTQIEKGDCIVAFSRSGIFALKRDIEQRTGLRCAVAYGALPPET 527
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
+ QA FN + + DV+VASDAIGMGLNL I R++F T+ K++G E L+ ++KQIA
Sbjct: 528 KAEQAKLFN--AGKLDVMVASDAIGMGLNLRIKRVVFDTLSKWNGKEEVVLSASQIKQIA 585
Query: 188 GRAGRYGSKFPV-------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
GRAGRYG++ G VT +L +L +L P + A + P+ D + S
Sbjct: 586 GRAGRYGTQDKSTKTADLGGVVTTRHEHELDILRAALASPLVPITRAAIQPSSDALSQLS 645
Query: 241 RLHP----DSSLYGILEHFLENAKL-----SENYFFANCEEVLKVATVIDQLP---LRLH 288
+ P SS L + L S+++F ++ + L+++ +I+ L +
Sbjct: 646 AMLPGKDGKSSGLRTLSQLFGDVSLLSRIDSDHFFLSDFSQQLRISPLIESASSGMLTVG 705
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL------------------------ 324
E+ F +P + D+ L +S+ +V+
Sbjct: 706 ERETFSDAPANTRDERVVAFLCNGVRQFSRGALVEFDDAAKDLAMLEVEEAVLALMQKAV 765
Query: 325 --REIFTP------------------GTLQVPKTQA-------ALRELESIHKVLDLYVW 357
R+ P ++QV + A L LES+H+ LY+W
Sbjct: 766 DARDAAPPRARDEEQLPLFAYLNTGADSVQVGGSAAHPLINITTLLMLESLHRCFTLYLW 825
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLE--RLGWQK 394
LSFR +F R ++K + I+ L+ R G K
Sbjct: 826 LSFRFPLAFCYRAEVGARKKVAEEAIDFVLQGIRFGRAK 864
>gi|366991679|ref|XP_003675605.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
gi|342301470|emb|CCC69239.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
Length = 739
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 222/416 (53%), Gaps = 26/416 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ + RG+++T ALLG A E+HLCG+ + +PL+++I+++TG
Sbjct: 313 MVPLNKKFDIVVLDEIQMMSDEDRGWAWTNALLGAQAREVHLCGEKSTLPLVRKIVEMTG 372
Query: 61 DDVKVQSYERLSPLVPLNVPLGS----FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLC 116
D + + YERL LNV S ++ GDCIV FS+ I LK IE++
Sbjct: 373 DQLTINEYERLG---GLNVEKKSIKTKLKGLERGDCIVAFSKKKILDLKLEIEAKTDMKV 429
Query: 117 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 176
+++YGSLPPETR +QA FN S E D+LVASDAIGMGLNL+I RIIFST KF+G EL
Sbjct: 430 AVIYGSLPPETRVQQANLFN--SGEADILVASDAIGMGLNLSIDRIIFSTDLKFNGKELI 487
Query: 177 DLTVPEVKQIAGRAGRYGSK---FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN- 232
+L+ +KQI GRAGR+ S P G ++ DS L + + + P L+SA ++P
Sbjct: 488 NLSSSNIKQIGGRAGRFKSHDEDRPTGYISSFDSAVLQSVKEGIEAPIEYLKSAVIWPTD 547
Query: 233 ---FDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLPLRL 287
L+ + P S L L LE K+ + + EV+K+ +D +P
Sbjct: 548 KICEQLLMRFPPGTPPSVLLQTLSDQLEKGSKKIFKVSNLKDKFEVIKIFEHMDDIPFL- 606
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL----QVPKTQAALR 343
+K +PV + + + F +K L P L + + L
Sbjct: 607 -DKLKLSNAPVK-DLPMVKKAFYNFCQTIAKGQTRGLLTYNIPFKLLDYRYITDDKNGLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
E+++ ++ L+ WLS R F D E A K C M+I E L+RL + P ++K
Sbjct: 665 VYEALYNIIMLFFWLSNRYPSYFVDLESATDLKYFCEMIIFEKLDRLK-KNPYLRK 719
>gi|294954454|ref|XP_002788176.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239903391|gb|EER19972.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 661
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 206/392 (52%), Gaps = 48/392 (12%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKV 65
+YD VIDE+Q++G + RG ++TRA+L + A E+HLCGD A L++ +L +DV V
Sbjct: 213 EYDVGVIDEVQLVGDRERGGAWTRAILALPAREIHLCGDGRATELVETLLGTYRPNDVVV 272
Query: 66 QS--YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ Y RLSPL +GS+ +++ GDC+V FSR I R+K IE + +VYG+L
Sbjct: 273 RHKPYSRLSPLFLSGKAIGSYRSLRKGDCVVVFSRWDIMRVKADIERSTRWRVCVVYGTL 332
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
PPETR Q FN EFDVLVASD IG+GLN NI R+IFST+ K+DG+E R L E
Sbjct: 333 PPETRRDQINSFN--RQEFDVLVASDCIGLGLNFNIRRVIFSTVHKYDGIETRQLLPTEF 390
Query: 184 KQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSL----------------LEPSPMLE 225
+QI GRAGRYG + G V C+ + LP L L S +
Sbjct: 391 RQIGGRAGRYGLSAGAEGGVVACMHEDHLPALFAGFGLEWTEDTFEKEVPNQLIISDTVT 450
Query: 226 SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP 284
A L P ++ S H +++ + E L AK+ + A+ + + + T +++
Sbjct: 451 QAALLPESSIL---SAFHCEAAA-ALGEECLSAAKVFSTFADVAHTDPICYLGTWSNRMA 506
Query: 285 -----------LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL 333
L + FC +PVD ND I GL FA + +V ++ P +
Sbjct: 507 NIAKCLADIEELSFQQVVEFCSAPVDPNDPIVLSGLRTFA-----QSLVATNQVPLPDNM 561
Query: 334 ----QVPKTQAALRELESIHKVLDLYVWLSFR 361
Q P T +A+ LE I ++ DLY+WL+ R
Sbjct: 562 VFDAQTPTTVSAVFHLERICQIYDLYLWLARR 593
>gi|241951316|ref|XP_002418380.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223641719|emb|CAX43680.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 722
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 227/404 (56%), Gaps = 30/404 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ +
Sbjct: 307 DLCVIDEIQMISDPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVKITGDELEIKKF 366
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RL L + ++ GDC+V FS+ I + K IE + ++YG+LPPE R
Sbjct: 367 DRLGKLTVEKSSINLLQ-LKKGDCLVVFSKKKILKYKCDIERNTRLKVGVIYGALPPEIR 425
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A++FN+ E+DVLVASDAIGMGLNL I+RI+FS + KF+G L+ L+V +VKQIAG
Sbjct: 426 SQEASKFNNG--EYDVLVASDAIGMGLNLKINRIVFSGVNKFNGSTLQKLSVSQVKQIAG 483
Query: 189 RAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-D 245
RAGR+ ++ E VT L L +++ L P + A ++P + Y +P
Sbjct: 484 RAGRFSAQHGSKEGFVTALHRSSLVYINQCLKTPVSEILKASIWPTNGIWRQYMANNPKK 543
Query: 246 SSLYGILEHFLENAK--LSENYFFANCEEVLKVATVIDQ----LPLRLHEKYLFCISPVD 299
+SL + E+FL N ++N+F + ++ +++ ++ + + + ++ +P+
Sbjct: 544 NSLSSVYENFLTNVLKFQNDNFFISELDQKVQLLNLVSKDRFLSTMIIDDQLTISETPIS 603
Query: 300 M----NDDISSQGLTQFATNYSKK--------GIVQLREI----FTPGTLQVPKTQAALR 343
N + + QF K+ G + L + F + VP + +
Sbjct: 604 FRTSNNPKLLQNTVIQFYKTIVKRDCKSILDFGFLDLELLSQTSFVDTNVMVPLQK--VE 661
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+LE +HK++ L++WLS R F D++ A KA+ I + L
Sbjct: 662 KLEDMHKLVLLFLWLSQRFPTLFIDKDSAMEVKALVEKRINQEL 705
>gi|345491178|ref|XP_001607739.2| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Nasonia vitripennis]
Length = 705
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 206/372 (55%), Gaps = 19/372 (5%)
Query: 36 CANELHLCGDPAAVPLIQQILQV--------TGDDVKVQSYERLSPLVPLNVPLGSFSNI 87
C E+ P V +I +I + TG+DV+V+ Y+RL+ L + LG+ SN+
Sbjct: 262 CTVEMMNLNHPCEVAVIDEIQLIQDPGRGWXTGEDVEVRKYKRLTELEIEDAALGTLSNV 321
Query: 88 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147
Q GDCIV F+++ IY + + +E R + +++YGSLPP T+ QA +FND + VLVA
Sbjct: 322 QPGDCIVCFNKNDIYTVSRNLEQRNMEV-AVIYGSLPPGTKLAQAAKFNDPNHPCKVLVA 380
Query: 148 SDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202
+DAIGMGLNL+I R+IF ++ K E+ ++V QIAGRAGRYG+++ G V
Sbjct: 381 TDAIGMGLNLHIRRLIFYSLIKPSINKKGEREMDTISVSSALQIAGRAGRYGTQWEKGFV 440
Query: 203 TCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
T EDLP L KSLL SP + AGL P D I +Y+ P + L +++ F+ +
Sbjct: 441 TTFKPEDLPTL-KSLLSQSPDTITQAGLHPTADQIELYAYHLPKAPLSNLMDIFVSLCTV 499
Query: 262 SEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 320
++ YF N ++ +A +I+ +PL L +Y+FC +P++ +FA Y K
Sbjct: 500 DDSMYFMCNIDDFKFLADMIEHVPLPLRARYVFCCAPINRKLPFVCTMFLKFARQYCKNE 559
Query: 321 IVQLRE--IFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
+ + L PKT L LE++ VLDLY+WLS+R + FP+ + +
Sbjct: 560 PITFNWLCLHIGWPLTSPKTLIDLVHLEAVFDVLDLYLWLSYRFPDLFPEPNMVQDMQKE 619
Query: 379 CSMLIEEFLERL 390
+I++ + +L
Sbjct: 620 LDSVIQQSIFQL 631
>gi|410082243|ref|XP_003958700.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
gi|372465289|emb|CCF59565.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
Length = 746
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 215/402 (53%), Gaps = 14/402 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D+D V+DEIQMLG + RG++++ ALLG+ A E+HLCG+ + +P+I++I +TG
Sbjct: 304 MIPYSQDFDVVVLDEIQMLGDEDRGWAWSNALLGVKAKEIHLCGEKSVLPVIKKITALTG 363
Query: 61 DDVKVQSYERLSPLVPLNVPL--GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
D + + YERL L + L G+ N++ GDC+V FS+ I LK IE K ++
Sbjct: 364 DKLTINEYERLGELSVESRSLKNGNMRNLRKGDCLVAFSKKKILDLKLKIERETKFKVAV 423
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YGSLPPETR +QA+ FN+ E+++LVASDAIGMGLNL I RIIF T KF+G EL +L
Sbjct: 424 IYGSLPPETRLQQASLFNNG--EYEILVASDAIGMGLNLAIDRIIFMTDVKFNGKELVNL 481
Query: 179 TVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
T ++QI GRAGRY + G +T S L + + P L+ ++P ++
Sbjct: 482 TASNIRQIGGRAGRYKDTKDEPSKGFITATKSSVLKSIRDGMEAPMSYLDKIVVWPTDEI 541
Query: 236 -IYMYSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQL-PLRLHEKY 291
+ R P + L +L+ F E + F + E LK + +++ + HEK
Sbjct: 542 CAKLMVRYPPRTKLSFLLKKFEEQLENHSKQLFKLPDLESKLKTIDLFERMNTIPFHEKL 601
Query: 292 LFCISPVD---MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESI 348
+PV + D Q + Y+K + T + + L ES+
Sbjct: 602 RLSTAPVKDAPLVKDAFKQFCETISERYTKSLLSYDFPFHTLDYSYIQNERYDLEHYESL 661
Query: 349 HKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ ++ L+ WLS R F D E A + C ++I E L+RL
Sbjct: 662 YNIITLFFWLSNRYPAYFIDTESAKDLRNFCELIIFEKLDRL 703
>gi|349699527|ref|ZP_08901156.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 815
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 221/406 (54%), Gaps = 23/406 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD V
Sbjct: 395 DVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLFILGAPDCIPMVRRIAELCGDPVDEIRL 454
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPLV + S +Q D ++ FSR + L+ + ++GK + ++VYG+L PE R
Sbjct: 455 ERKSPLVAAERSV-SLHELQKHDALIAFSRREVLDLRALLLAQGKRV-AVVYGALSPEVR 512
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFND + D+L+A+DAIGMGLNL I R++F+ ++K+DG + RDL EVKQI G
Sbjct: 513 RAEAQRFNDGDA--DILIATDAIGMGLNLTIRRVVFAALRKYDGNQTRDLNPQEVKQIGG 570
Query: 189 RAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPD 245
RAGRYG K G V L+ P +H L P +E + P+ D++ +
Sbjct: 571 RAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAPPQPIEDMRPQVQPDADIVQAVAAEIGS 629
Query: 246 SSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SL+G+L + NY AN E+ +AT ++ + L L +++++ + PVD D
Sbjct: 630 DSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAIATALEGVADLTLAQRWVYAMCPVDDRD 689
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESI---HKVLDLYVWL 358
+ Q L +A +++ V PGT ++P + A R ELE HK L + WL
Sbjct: 690 N-GIQRLVHWAADHAAGNAVP-----PPGTGRLPPPERAERTELERAEKRHKRLVAWRWL 743
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFLER--LGWQKPRVKKVTP 402
+ R E++ +RE A + A + IE+ L + + + PR+ +P
Sbjct: 744 ALRFPEAYVNREEAEATTARLNDWIEDVLRQQSIRARAPRISPFSP 789
>gi|68486418|ref|XP_712944.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
gi|68486481|ref|XP_712911.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434331|gb|EAK93744.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434367|gb|EAK93779.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
Length = 720
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 225/404 (55%), Gaps = 30/404 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQM+ RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ +
Sbjct: 301 DLCVIDEIQMIADPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVEITGDELEIKKF 360
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RL L + S ++ GDC+V FS+ I + K IE + ++YG+LPPE R
Sbjct: 361 NRLGKLT-VEKSNTSLQQLKKGDCLVVFSKKKILKFKCDIERNTRLKVGVIYGALPPEIR 419
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A++FN+ E+DVLVASDAIGMGLNL I+RI+FS + KF+G + L+V +VKQIAG
Sbjct: 420 SQEASKFNNG--EYDVLVASDAIGMGLNLKINRIVFSGVNKFNGSTVEKLSVSQVKQIAG 477
Query: 189 RAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-D 245
RAGR+ ++ E VT L L + + L P + A ++P ++ Y P
Sbjct: 478 RAGRFSAQHGSKEGFVTALHRSSLVYIDQCLKTPVSEISKACIWPTSNIWRQYMANDPRK 537
Query: 246 SSLYGILEHFLENAK--LSENYFFANCEEVLKVATVIDQLPLR----LHEKYLFCISPVD 299
SSL + E+FL N S+N+F + ++ +++ ++ + L + ++ +P++
Sbjct: 538 SSLSSVYENFLTNVLKFQSDNFFISELDQKVQLLNLVAKNRLLSTMIIDDQLTISETPIN 597
Query: 300 MNDDISSQGLTQFATNYSK-------KGIVQL---------REIFTPGTLQVPKTQAALR 343
++ + L + + K I+ + F + VP + +
Sbjct: 598 FRTSVNPKLLKNTVIKFYETIVKRDCKSILDFDFLDLELLSQNSFVGTDVMVPLQK--VD 655
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+LE +H+++ L++WLS R F D++ A KA+ I + L
Sbjct: 656 KLEDMHRLVLLFLWLSQRFPTLFIDKDSAMEVKALVEKRINQEL 699
>gi|349688090|ref|ZP_08899232.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 815
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 222/411 (54%), Gaps = 23/411 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD V
Sbjct: 395 DVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLFILGAPDCIPMVRRIAELCGDPVDEIRL 454
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPLV + S +Q D ++ FSR + L+ + ++GK + ++VYG+L PE R
Sbjct: 455 ERKSPLVAAERSV-SLHELQKHDALIAFSRREVLDLRALLLAQGKRV-AVVYGALSPEVR 512
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFND + D+L+A+DAIGMGLNL I R++F+ ++K+DG + RDL EVKQI G
Sbjct: 513 RAEAQRFNDGDA--DILIATDAIGMGLNLTIRRVVFAALRKYDGNQTRDLNPQEVKQIGG 570
Query: 189 RAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPD 245
RAGRYG K G V L+ P +H L P +E + P+ D++ +
Sbjct: 571 RAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAPPQPIEDMRPQVQPDADIVQAVAAEIGS 629
Query: 246 SSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SL+G+L + NY AN E+ +AT ++ + L L +++++ + PVD D
Sbjct: 630 DSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAIATALEGVADLTLAQRWVYAMCPVDDRD 689
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESI---HKVLDLYVWL 358
+ Q L +A +++ V PGT ++P + A R ELE HK L + WL
Sbjct: 690 N-GIQRLVHWAADHAAGNAVP-----PPGTGRLPPPERAERTELERAEKRHKRLVAWRWL 743
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFLER--LGWQKPRVKKVTPRPKLN 407
+ R E++ +RE A + A + IE+ L + + + PR +P + N
Sbjct: 744 ALRFPEAYINREEAEATTARLNDWIEDVLRQQSIRARTPRTTPFSPDNRAN 794
>gi|254577005|ref|XP_002494489.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
gi|238937378|emb|CAR25556.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
Length = 738
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 220/410 (53%), Gaps = 29/410 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D+D V+DEIQM+ RG++++ ALLG A E+H+CG+ + +PLI+ I+++TG
Sbjct: 306 MVPLTQDFDVVVLDEIQMMADLDRGWAWSNALLGAKAREVHVCGEKSTLPLIKNIIKMTG 365
Query: 61 DDVKVQSYERLSPLVPLN--VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
D + V YERL L + +P G + +++ GDC+V FS+ I LK IE ++
Sbjct: 366 DKLTVNEYERLGKLKVEDWVLPKG-YKSLRKGDCVVAFSKKRILDLKLRIEKDTNLKVAV 424
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YGSLPPETR +QA FN S E+D++VASDAIGMGLNL+I R+IF+T KF+G EL +L
Sbjct: 425 IYGSLPPETRIQQAHLFN--SGEYDIMVASDAIGMGLNLSIDRVIFTTDVKFNGKELVEL 482
Query: 179 TVPEVKQIAGRAGRY-----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN- 232
+ +KQI GRAGR+ G P G +T D L + + + P L+SA ++P
Sbjct: 483 SSSNIKQIGGRAGRFKSGSQGQDIPQGFITTFDPSVLSTIRRGMDAPIDYLQSAVIWPTD 542
Query: 233 ---FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL-PLRL 287
++I + P S L + LE K S F ++ + L V + + + +
Sbjct: 543 EICGNIITKFPPGTPPSVLLKAIALRLE--KSSHKLFTMSDLKNKLNVLAIFEHMDDIAF 600
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT-PGTLQV------PKTQA 340
+K +PV + + QF +K+ Q R + + P +V +
Sbjct: 601 FDKLRLSNAPVK-DLPLVRNAFAQFCDTIAKR---QTRGLLSYPFPFEVLDYKCITDEKF 656
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
L ES++ ++ LY WL R F D E A K C ++I E L+RL
Sbjct: 657 GLELYESLYNIIMLYFWLGNRYPSYFIDYESATDLKYFCELIIFEKLDRL 706
>gi|238882216|gb|EEQ45854.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 720
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 225/404 (55%), Gaps = 30/404 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +IDEIQM+ RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ +
Sbjct: 301 DLCIIDEIQMIADPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVEITGDELEIKKF 360
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RL L + S ++ GDC+V FS+ I + K IE + ++YG+LPPE R
Sbjct: 361 NRLGKLT-VEKSNTSLQQLKKGDCLVVFSKKKILKFKCDIERNTRLKVGVIYGALPPEIR 419
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+++A++FN+ E+DVLVASDAIGMGLNL I+RI+FS + KF+G + L+V +VKQIAG
Sbjct: 420 SQEASKFNNG--EYDVLVASDAIGMGLNLKINRIVFSGVNKFNGSTVEKLSVSQVKQIAG 477
Query: 189 RAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-D 245
RAGR+ ++ E VT L L + + L P + A ++P ++ Y P
Sbjct: 478 RAGRFSAQHGSKEGFVTALHRSSLVYIDQCLKTPVSEISKACIWPTSNIWRQYMANDPRK 537
Query: 246 SSLYGILEHFLENAK--LSENYFFANCEEVLKVATVIDQLPLR----LHEKYLFCISPVD 299
SSL + E+FL N S+N+F + ++ +++ ++ + L + ++ +P++
Sbjct: 538 SSLSSVYENFLTNVLKFQSDNFFISELDQKVQLLNLVAKNRLLSTMIIDDQLTISETPIN 597
Query: 300 MNDDISSQGLTQFATNYSK-------KGIVQL---------REIFTPGTLQVPKTQAALR 343
++ + L + + K I+ + F + VP + +
Sbjct: 598 FRTSVNPKLLKNTVIEFYETIVKRDCKSILDFDFLDLELLSQNSFVGTDVMVPLQK--VD 655
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+LE +H+++ L++WLS R F D++ A KA+ I + L
Sbjct: 656 KLEDMHRLVLLFLWLSQRFPTLFIDKDSAMEVKALVEKRINQEL 699
>gi|170085747|ref|XP_001874097.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651649|gb|EDR15889.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 833
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 202/427 (47%), Gaps = 65/427 (15%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + Y AVIDEIQM+ RG +T A+LGI A ELHLCG+ AVP++Q +L+ TG
Sbjct: 314 MLNFNTRYQIAVIDEIQMIADPQRGSGWTSAVLGILAEELHLCGEETAVPVVQALLKDTG 373
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+V ++ YERL+PL LG ++ GDCIVTF R +I+ +KK +E + C++V
Sbjct: 374 DEVVIRRYERLTPLKVAETSLGGDLGKVEKGDCIVTFKRSSIFAIKKEVERKTGMKCAVV 433
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R+ QA FND S +DV+V SDAIGMGLNL I RIIF + K+ + L+
Sbjct: 434 YGRLPPEIRSEQAALFNDPGSGYDVMVGSDAIGMGLNLKIRRIIFECLTKYSAGAFQPLS 493
Query: 180 VPEVKQIAGRAGRYGSKFPV-------GEVTCLDSEDLPLLHKSLLEP-SPMLESAGLFP 231
++KQIAGRAGRYG G T L DLP L +L +P P+ + +
Sbjct: 494 TSQIKQIAGRAGRYGQHLSSSSSSSHCGYATTLHPADLPTLSSALSKPFKPVHHAHITYS 553
Query: 232 NFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVID------QL 283
+ S L P S S +L +L + + +V + +D
Sbjct: 554 TTTFSALRSLLPPSSAGSTKTVLSAHAYIGRLPKFVRYTYDAQVDQACECVDLYGGDANE 613
Query: 284 PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE----------------- 326
+ + E+ +PV D++ + +F Y ++ V E
Sbjct: 614 GMTVRERLKHLSAPVGWRDEVMIGVMARFLGMYKERQEVDYWEGVGDLGFMECLVGVEGA 673
Query: 327 --------IFTPGTLQVPKT-----------------------QAALRELESIHKVLDLY 355
I P + V T L+ LES HK +Y
Sbjct: 674 MRVQAQPPIPIPTNIDVEGTNNDNDKGKNKNKKQKKTPRMKPTNPTLQTLESFHKTAVMY 733
Query: 356 VWLSFRL 362
+WLS+R+
Sbjct: 734 IWLSYRM 740
>gi|444319274|ref|XP_004180294.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
gi|387513336|emb|CCH60775.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
Length = 758
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 219/407 (53%), Gaps = 21/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++D AV DEIQM+ RG+++T ALLG+ A E+HLCG+ +A+PL+++++++TG
Sbjct: 306 MVPLHRNFDIAVFDEIQMMADPDRGWAWTIALLGVQAREVHLCGEKSALPLLKELVKMTG 365
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ + YERL L PL +F+ ++ GDCIV FS+ I LK IE R K ++V
Sbjct: 366 DNLVINEYERLGKLTVEKNPLNNNFALLEKGDCIVAFSKKKILDLKLEIEKRTKLKVAVV 425
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN S +DV+VASDAIGMGLNL I R++F+T KF+G E+ LT
Sbjct: 426 YGSLPPETRIQQANLFN--SGTYDVVVASDAIGMGLNLAIRRVVFTTNMKFNGKEMESLT 483
Query: 180 VPEVKQIAGRAGRYGSKFPV----GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+KQI GRAGR+ + G +T D L ++ + P L + ++P ++
Sbjct: 484 SSNIKQIGGRAGRFKADCNKEDIRGYITATDRYVLASVNNGIEAPIEYLTACCIWPTDEI 543
Query: 236 IYMYSRLHPDSSLYGILEH---FLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKY 291
+ P +L L L + K ++ + ++ LKV +++L + EK
Sbjct: 544 CNNIMKQLPSGTLMSELFEKISILLDKKYNKFFKLSDLSNKLKVIKTMEKLNNISFSEKL 603
Query: 292 LFCISPVDMND-DISSQGLTQFATNYSK---KGIVQL---REIFTPGTLQVPK-TQAALR 343
C +P M D ++ F S+ K I+ +I T + K + +L
Sbjct: 604 RLCNAP--MKDFPLTKDAFKLFCETISRGETKSILSYPLPFKILTYDKINDDKDKEYSLE 661
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
+ E+++ + LY WL R F D E + C M+I L+ L
Sbjct: 662 QYEAMYSIFTLYSWLHNRYPNYFIDIESVNEMRLFCEMIIFAKLDNL 708
>gi|397629726|gb|EJK69477.1| hypothetical protein THAOC_09261, partial [Thalassiosira oceanica]
Length = 617
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 171/290 (58%), Gaps = 14/290 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
+AD+ DYD VIDEIQM+ + RG++++RAL+G+ E+H+CG P AV L+++I +
Sbjct: 252 LADLDEDYDVVVIDEIQMIQDEFRGYAWSRALMGMRCKEIHVCGGPEAVDLVKKIAKNCN 311
Query: 61 DDVKVQSYERLSPLVPLNVPL-------GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 113
DD +V+ YER + L + L G++SN++ GDC+V F++ I+ +K+ IE
Sbjct: 312 DDFEVRRYERFTKLAVEDSSLAASPSAKGAYSNVKKGDCVVAFAKKDIFAIKREIERDTS 371
Query: 114 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 173
H C ++YGSLPPE RT QA FND S++D+LVASDAIGMGLNL I RII +++ K +G
Sbjct: 372 HKCCVIYGSLPPEIRTEQARLFNDQDSDYDILVASDAIGMGLNLAIRRIILNSIYKNNGE 431
Query: 174 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
+ L KQIAGRAGR S FP G VT DL L + L AGL P+
Sbjct: 432 TIVKLDHSSCKQIAGRAGRRNSPFPNGVVTTRCPSDLKYLRTCMETDIEPLARAGLVPSP 491
Query: 234 DLIYMYSRL------HPDSSLYGILEHF-LENAKLSENYFFANCEEVLKV 276
I ++S + L+ +LE + L++ FAN EVL V
Sbjct: 492 PHIALFSEQLTAYSGKSNMELHQVLEEKPGDRIALAQELPFANRAEVLTV 541
>gi|388856167|emb|CCF50158.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial [Ustilago
hordei]
Length = 868
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 215/436 (49%), Gaps = 72/436 (16%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +S D V+DEIQM+ RG ++T +LG+ A ELHLCG+ + +PLI+ + + G
Sbjct: 378 MVSTMSSVDVGVVDEIQMIADPHRGSAWTNVVLGLPAKELHLCGEASVIPLIESLAKACG 437
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + V YERL+PL L I+ GDCIV FSR AI+ LKK IE R C++
Sbjct: 438 DHLTVHRYERLTPLSVAEESLDDDLGKIERGDCIVAFSRSAIFALKKDIERRTGLRCAVA 497
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPET+ QA FN+ + DV+VASDAIGMGLNL I R+IF T+ K++G E L+
Sbjct: 498 YGALPPETKAEQAKLFNEG--KLDVMVASDAIGMGLNLGIKRVIFDTLTKWNGKEEITLS 555
Query: 180 VPEVKQIAGRAGRYGSKFPV-------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
++KQIAGRAGRYG++ G VT +L +L +L P + A + P
Sbjct: 556 ASQIKQIAGRAGRYGTQDKSTKKADLGGVVTTRHEYELEILRSALASPLLPITRAAIQPT 615
Query: 233 FDLIYMYSRLHPDS----SLYGILEHFLENAKLSE----NYFFANCEEVLKVATVIDQLP 284
+ S + P + L + + F + A LS N+F ++ + ++ +I+
Sbjct: 616 SGTLSSLSAMLPGAGGGEGLRMLSQIFTDVALLSRIDSGNFFMSDFSQQSSISPLIESAS 675
Query: 285 ---LRLHEKYLFCISPVDMNDD------------ISSQGLTQFATNYSKKGIVQLR-EIF 328
L L E+ F SP + D+ S GL F T G++++ E+
Sbjct: 676 SGLLTLEERATFSSSPANRRDERLMAFLSNIVRQFSRGGLVDFDTAAKDLGMLEVEDEVV 735
Query: 329 T-----------------PGTLQVP-----------KTQAA----------LRELESIHK 350
T G ++P TQ + L LES+H+
Sbjct: 736 TLMRQAIAAREQDAQPTKEGKEELPLIAYLNNVSGSLTQGSSAHPFINVTTLLMLESLHR 795
Query: 351 VLDLYVWLSFRLEESF 366
LY+WLSFR +F
Sbjct: 796 CFTLYLWLSFRFPLAF 811
>gi|330993313|ref|ZP_08317248.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759343|gb|EGG75852.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 817
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 211/389 (54%), Gaps = 21/389 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD +
Sbjct: 395 DVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLFILGAPDCIPMVRRIAELCGDPIDEIRL 454
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPLV + S +Q D ++ FSR + L+ + + GK + ++VYG+L PE R
Sbjct: 455 ERKSPLVAAERAV-SLHELQKHDALIAFSRREVLDLRALLLAHGKRV-AVVYGALSPEVR 512
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN+ + D+L+A+DAIGMGLNL I R++F+ ++K+DG + RDL EVKQI G
Sbjct: 513 RAEAQRFNNGDA--DILIATDAIGMGLNLTIRRVVFAALRKYDGNQTRDLNPQEVKQIGG 570
Query: 189 RAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPD 245
RAGR+G K G V L+ P +H L P +E + P+ D++ +
Sbjct: 571 RAGRFG-KHEQGVVAVLEGVGSPSFIHAMLAAPPQPIEDMRPQVQPDADIVQAVAAEIGS 629
Query: 246 SSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SL+G+L + NY AN E+ +AT ++ +P L L +++++ + PVD D
Sbjct: 630 DSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAIATALEGVPDLTLAQRWVYAMCPVDDRD 689
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESI---HKVLDLYVWL 358
+ Q L +A +++ V PGT ++P + A R ELE HK L + WL
Sbjct: 690 N-GIQRLVHWAADHAAGNTVP-----PPGTGRLPAAERAERTELERAEKRHKRLVAWRWL 743
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFL 387
+ R E++ +RE A A IE+ L
Sbjct: 744 ALRFPETYVNREEAEGTTARLDEWIEDVL 772
>gi|401885058|gb|EJT49189.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
2479]
Length = 772
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 203/413 (49%), Gaps = 40/413 (9%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQ 66
+D VIDEIQMLG RG ++ A++G+ A E+HLCGD L+ +++ GD + V
Sbjct: 309 WDVVVIDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVH 368
Query: 67 SYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y RL+PL + L S +Q GDC+VTFSR ++ LK IE + ++VYG+LPP
Sbjct: 369 KYSRLTPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPP 428
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
ETR QA FN+ ++ VLVASDA+GMGLNL I+RIIF T+ K++G
Sbjct: 429 ETRAEQARDFNEGRAQ--VLVASDAVGMGLNLKINRIIFETLWKWNGSRRCPFDTATTGD 486
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP- 244
G G G VT L +D LL L P ++ A + P + + L P
Sbjct: 487 APGDTG--------GTVTTLHEDDFALLKSLLGRTLPSVKRAVIEPPSEALTALQPLLPA 538
Query: 245 DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMND 302
+S ++EHF AKL A+ +A +++ L L E L +P+ D
Sbjct: 539 KTSFESLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILTLSELQLLANAPLPARD 598
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFT------------------PGTLQVPKTQAALR- 343
+ + + + Y+K+ V L G +VP R
Sbjct: 599 EKTVRFFSTMVWQYAKEYHVDLHAAIQRTGLLNSLDVIEKLMAKLDGPPKVPPQSHERRV 658
Query: 344 ------ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ELES+HK L Y+WLSFR E +FPDRELAA K+ ++E LE +
Sbjct: 659 LIQKVPELESLHKCLVNYLWLSFRFELAFPDRELAAEMKSRTEKMLEACLEHM 711
>gi|367009990|ref|XP_003679496.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
gi|359747154|emb|CCE90285.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
Length = 739
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 232/433 (53%), Gaps = 43/433 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++D V+DEIQM+ RG+++T ALLG A E+H+CG+ + +P+I++I ++ G
Sbjct: 304 MVPLTQNFDVVVLDEIQMMADLDRGWAWTHALLGARAREIHVCGEKSTLPVIRKIAEMAG 363
Query: 61 DDVKVQSYERLSPL----VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLC 116
D + V YERL L LN L S ++ GDC+V FS+ I LK IE
Sbjct: 364 DKLTVNEYERLGQLQVEPKALNKGLKS---LRKGDCVVAFSKKKILDLKLKIEKETSLKV 420
Query: 117 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 176
+++YGSLPPETR +QA FN + ++DVLVASDAIGMGLNL+I RI+F+T KF+G+EL
Sbjct: 421 AVIYGSLPPETRIQQANLFN--TGDYDVLVASDAIGMGLNLSIDRIVFTTNVKFNGLELV 478
Query: 177 DLTVPEVKQIAGRAGRY-----GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 231
DLT +KQI GRAGR+ G + P G +T LD L + + + P L SA ++P
Sbjct: 479 DLTSSNIKQIGGRAGRFKANADGGEIPKGYITALDPRVLKSVRQGIEAPIKYLSSAVIWP 538
Query: 232 N----FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF----FANCEEVLKVATVIDQL 283
++ + P S+L + LE + S+ F N VL+V +D +
Sbjct: 539 TDVICARIMIKFPPKTPPSTLLKTIALQLE--QRSDRLFTLSDLKNRLNVLQVFEHMDSI 596
Query: 284 PLRLHEKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFT-PGTLQV------ 335
P EK +PV D+ + + QF +K+ Q R + + P +V
Sbjct: 597 PFL--EKLRLSNAPVKDLT--LVKRAFYQFCQTIAKR---QTRGLLSYPFPFEVLDYRCI 649
Query: 336 PKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKP 395
+ L ES++ ++ +Y WLS R F D E A K C M+I E L+R+ + P
Sbjct: 650 ADEKFTLELYESLYNIIMIYFWLSNRYPSFFIDLESARDMKYFCEMIIFEKLDRIK-KNP 708
Query: 396 RVKKVTPRPKLNS 408
KK RP +NS
Sbjct: 709 YDKK---RPGINS 718
>gi|403221522|dbj|BAM39655.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 679
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 224/418 (53%), Gaps = 44/418 (10%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AV+DE+QM+G +TRG+++T+A G+ ELH+CG A + L +++ + GD ++V
Sbjct: 246 YEVAVLDEMQMVGDRTRGYAWTKAFWGLKTKELHICGSNACLTLARKLADIRGDTLEVYE 305
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESR---------------- 111
+ RL L L+ + +++ GDC+V FSR+ ++L+ IES
Sbjct: 306 HARLGKLKVLD-NVVKLESLEPGDCVVCFSRNEAFKLRDQIESTVYEWDPRDTTIGNTQR 364
Query: 112 ---GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 168
+ + SIVYGSLPPETR +Q FN+ ++ +L+ASD IGMG+N++I RIIF+ +
Sbjct: 365 KNGDRPITSIVYGSLPPETRCKQIESFNNRDTK--ILIASDVIGMGVNVSIRRIIFNKLT 422
Query: 169 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 228
K+DG E R L EV+QIAGRAGRYG + GEV+C+ +DLP+L + + P +E A
Sbjct: 423 KYDGSESRVLNAAEVQQIAGRAGRYGLECGEGEVSCVRKKDLPVLKELMSTEPPQIEKAV 482
Query: 229 LFPNFDLIYMYS-----RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID-- 281
+ P+ ++ ++ SL + + AK+ +N+ + +V VA ++
Sbjct: 483 ISPSPEVFEAFNLALNQATGSRHSLSDVTQLITSMAKVGKNFAMCDFVQVNTVAKCLEGI 542
Query: 282 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVP----- 336
LP +++ YL V M ++S + +A +++ V++ I L++
Sbjct: 543 NLPFEVYKHYLL----VPMGSPLTSLVVRAYAASHALLNKVKISNIINEACLELNFDDLN 598
Query: 337 --KTQAALRELESIHKVLDLYVWLSFRLEESFPD----RELAASQKAICSMLIEEFLE 388
++ LE +++ LD+Y WLS + + D EL A+ S L+ E E
Sbjct: 599 RISANEEVKRLELLYEALDIYTWLSNKFPSVYVDGNAVAELKTKISAVLSRLLSEVHE 656
>gi|154299770|ref|XP_001550303.1| hypothetical protein BC1G_11511 [Botryotinia fuckeliana B05.10]
Length = 720
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 190/341 (55%), Gaps = 40/341 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + S D AVIDEIQM+G + RG+++T+A+LG+ A E+HLCG+ LI+++ + G
Sbjct: 206 MVPLNSKVDVAVIDEIQMIGDEERGWAWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMG 265
Query: 61 DDVKVQSYERLSPLVPLNVPLGS---------------FSNIQTGDCIVTFSRHAIYRLK 105
D + + +YERL L + L S S ++ GD ++ FSR I+ +K
Sbjct: 266 DKLIIHNYERLGKLQVMAKSLTSRHSERDGPSGKESTPVSKLEKGDAVILFSRMRIHAMK 325
Query: 106 KAIES--RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 163
AIE+ RGK C+IVYGSLPPETR +QA FND +++D LVAS+A+GMGLNL+I R+I
Sbjct: 326 NAIEAHHRGKR-CAIVYGSLPPETRAQQAALFNDPDNDYDFLVASNAVGMGLNLSIKRVI 384
Query: 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---------------------SKFPVGEV 202
++K+ +G + L + E+KQIAGRAGRY ++ PVG V
Sbjct: 385 LESVKRHNGTDFMTLPISEIKQIAGRAGRYKTARDAIEAGPIDVADGIPTKPTEPPVGLV 444
Query: 203 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKL 261
T D +L ++ + + + +AG+FP ++I ++ P S+ + ++ E L
Sbjct: 445 TTFFKTDHEILSSAMSKEAAQMTTAGIFPPANVIERFAEYFPKSTPFSYVILRLHELGSL 504
Query: 262 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 302
S + +E +A +I + L + + +F +PV + D
Sbjct: 505 SSEFHLCQLKEQAAIADIIQEFDLTIRNRLIFLAAPVSLRD 545
>gi|320581988|gb|EFW96207.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Ogataea
parapolymorpha DL-1]
Length = 690
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 181/295 (61%), Gaps = 11/295 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DEIQM+G RG ++T +LG A E+HLCG+ +AVPL+++++ +TGDD+++ +
Sbjct: 223 FDVVVVDEIQMIGDPFRGSAWTNVILGARAKEIHLCGEVSAVPLVEKLVAMTGDDIEINN 282
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y RL L ++ S +Q GDCIV FS+ I +K IE C+++YG+LPPET
Sbjct: 283 YNRLGKLA-VDSEAISLDEVQRGDCIVAFSKKQILTIKAQIERDTNLKCAVIYGALPPET 341
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R+++A FND E+DV+VASDAIGMGLNL I+R++F+T++K+DG + L+ +KQI
Sbjct: 342 RSQEARMFNDG--EYDVVVASDAIGMGLNLKINRVVFTTLEKYDGRRMTALSNSSIKQIG 399
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRLHPDS 246
GRAGR+G VG +T L DL + + P L+ A L+P + ++ YS ++
Sbjct: 400 GRAGRFGIGEGVGHITALTEADLNKIRVVMQAPIEYLDKAVLWPSDPQWMHYYSMFPKNT 459
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR--LHEKYL---FCIS 296
L + F A L ++ E + ++ + DQ+ + ++E++L F IS
Sbjct: 460 KLITMFRKF--EADLDKSMRTNPKESIFRIQHMDDQMSMAKFINERHLEDDFAIS 512
>gi|58040193|ref|YP_192157.1| RNA helicase [Gluconobacter oxydans 621H]
gi|58002607|gb|AAW61501.1| Putative RNA helicase [Gluconobacter oxydans 621H]
Length = 833
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/390 (34%), Positives = 213/390 (54%), Gaps = 24/390 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G P +PL+++I ++ D V
Sbjct: 396 DVAIIDEAQMLADPDRGAAWTAAIMGVPARHVFILGAPDCIPLVKRIAELCDDPVDEIHL 455
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL ++ D ++ FSR + L+ + +RG+ + ++VYG+L PE R
Sbjct: 456 ERKSPLKAGETL--HLDELKPSDAVIAFSRREVLDLRAELMARGRRV-AVVYGALSPEVR 512
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN S E D+L+A+DAIGMGLNL+I R++FS ++KFDG + RDL EVKQI G
Sbjct: 513 RAEAARFN--SGEADILIATDAIGMGLNLSIRRVVFSALRKFDGRQTRDLVSQEVKQIGG 570
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGRYG K G V L P + +L P + E L P+ D++ +
Sbjct: 571 RAGRYG-KHESGLVCVLAGAGSPTFVRKMLSAPPEEIKELRPLVQPDSDIVRAVAEEIDS 629
Query: 246 SSLYGIL---EHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L +H + A NY A+ E+ L++A ++ + L L ++ + + P+D
Sbjct: 630 DSLYGVLTRIKHAVLRAD-DPNYRLADMEQALEIAAALEGVENLDLSTRWTYAMCPIDER 688
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ Q L Q+A +++ R + PGT ++P + A RE E HK L + W
Sbjct: 689 DN-GIQRLIQWAADHAAG-----RSVPPPGTGRLPHPEQAGREELERAEKRHKRLVAWRW 742
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L+ R +++P R+ A +I + IE+ L
Sbjct: 743 LALRFPDAYPARQDAEINTSILNDWIEQVL 772
>gi|353234529|emb|CCA66553.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 762
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 219/430 (50%), Gaps = 34/430 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D VIDEIQM+ RG ++T+ALLG+ A E+HLCG+ +AV LI+++++ G
Sbjct: 314 MVPLTRKFDVVVIDEIQMIANSERGGAWTQALLGLNAEEIHLCGEESAVELIKELVKPAG 373
Query: 61 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+V V YERL+PL LG+ ++I+ GDCIV FSR +I+ LK IES+ C+++
Sbjct: 374 DEVIVNRYERLTPLQIAPKSLGNNLADIRPGDCIVAFSRKSIFGLKHLIESKTGLRCAVI 433
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R QA +FN + VL+ASDAIGMGLNL I R++FST+KK+DG + ++
Sbjct: 434 YGKLPPEVRVDQAAKFNAGDVDHSVLIASDAIGMGLNLKIKRVLFSTLKKWDGYKNVTIS 493
Query: 180 VPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
+ E+KQIAGRAGRYG VG T ++ +L ++ L+ A + + +
Sbjct: 494 LSEIKQIAGRAGRYGLHDADSVGIATTFLHQEHQILASAMSNDVRELKYATIAADSVWLG 553
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL--PLRLHEKYLFC 294
R P S+ G L L++ + + F + ++L A ID+ L + K
Sbjct: 554 RLHRTLPPSTGLGELFQLLQDVAICDAPFSITDYSKLLDAAYTIDEACPNLSIATKATIA 613
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF------------------------TP 330
PV + Y IV IF T
Sbjct: 614 QVPVPWAIPEAVPIFESMLVAYENGEIVDPEAIFRQAGLMLILEDVMAAREEQQSQKDTD 673
Query: 331 G----TLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEF 386
G L + ++ L LE +HK+L +Y+W+S+R +F RE K I+
Sbjct: 674 GGASPVLSMRESSIRLEGLELLHKMLCVYLWMSYRFPVTFCMRERVQDIKLATEAGIQFC 733
Query: 387 LERLGWQKPR 396
LE + ++ +
Sbjct: 734 LEMVSLERAK 743
>gi|392378293|ref|YP_004985453.1| putative helicase [Azospirillum brasilense Sp245]
gi|356879775|emb|CCD00701.1| putative helicase [Azospirillum brasilense Sp245]
Length = 755
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 212/392 (54%), Gaps = 13/392 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + VIDEIQM+G RG+++T+A+ G+ A E+ + G A+P +Q++ G
Sbjct: 282 MVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAPEILMTGSADAIPYVQRLATALG 341
Query: 61 DDVKVQSYERLSPL--VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
++++V + R SPL VPL N++ GD ++ FSR + L++ + +R H ++
Sbjct: 342 EELEVVEFTRKSPLRVQEERVPL---ENVRRGDAVIAFSRKDVMGLRRELLAR-DHTVAV 397
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YG+L PE R +A RF D ++ DVLVA+DAIGMGLNL ++R++ ST +K+DG E RDL
Sbjct: 398 IYGALSPEVRRAEARRFRDGTA--DVLVATDAIGMGLNLPVARVVLSTTRKYDGREERDL 455
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP--SPMLESAGLFPNFDLI 236
E++QI GRAGR+G G V L+ E++ + ++L P P + PN +
Sbjct: 456 NSSEIRQIGGRAGRFG-MHEEGRVAVLEGENINPVRRALTTPPVPPEDPRTWISPNLTHV 514
Query: 237 YMYSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
+R SL +L E + ++ + + E+ ++ AT +D+ L L E+ +
Sbjct: 515 EAIARELDTDSLAKVLRTAGQELLRANQTFRMTDLEQRIQAATAVDRAKLPLAERDMLAR 574
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
P+D+ D + + L +ATN KG+ T L + E K L Y
Sbjct: 575 CPIDVRDQNNLRLLALWATNQG-KGVRNSAPDAAERFHHRVGTDVELEKAERAVKELTAY 633
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
WL++R +++PD +L ++A+ + IE L
Sbjct: 634 AWLAYRFPDAYPDMDLCQERRAMLNAFIERTL 665
>gi|347761752|ref|YP_004869313.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580722|dbj|BAK84943.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 835
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 21/389 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD V
Sbjct: 413 DVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLFILGAPDCIPMVKRIAELCGDPVDEIRL 472
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPLV + S +Q D ++ FSR + L+ + ++GK + ++VYG+L PE R
Sbjct: 473 ERKSPLVAAERSV-SLHELQKHDALIAFSRREVLDLRALLLAQGKRV-AVVYGALSPEVR 530
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN+ + D+L+A+DAIGMGLNL I R++F+ ++K+DG + RDL EVKQI G
Sbjct: 531 RAEAQRFNNGDA--DILIATDAIGMGLNLTIRRVVFAALRKYDGNQTRDLNPQEVKQIGG 588
Query: 189 RAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPD 245
RAGRYG K G V L+ P +H L P +E + P+ D++ +
Sbjct: 589 RAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAPPQPIEDMRPQVQPDADIVQAVAAEIGS 647
Query: 246 SSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMND 302
SL+G+L + NY AN E+ +AT ++ + L L +++++ + PVD D
Sbjct: 648 DSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAIATALEGVADLTLAQRWVYAMCPVDDRD 707
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESI---HKVLDLYVWL 358
+ Q L +A +++ V PGT +P + A R ELE HK L + WL
Sbjct: 708 N-GIQRLVHWAADHAAGNAVP-----PPGTGSLPPAERAERTELERAEKRHKRLVAWRWL 761
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFL 387
+ R E++ +RE A + A + IE+ L
Sbjct: 762 ALRFPEAYVNREDAEATTARLNDWIEDVL 790
>gi|188579978|ref|YP_001923423.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179343476|gb|ACB78888.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 778
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/399 (33%), Positives = 213/399 (53%), Gaps = 21/399 (5%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 383 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAANE 442
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V +ER SPL+ L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 443 SLEVIPFERKSPLILLDEPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 500
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF+ S E D+LV +DAIGMGLNL + RI+FS M+K+DGV R LT
Sbjct: 501 ALSPEVRRAEAARFH--SGEADILVTTDAIGMGLNLGPLKRIVFSAMRKWDGVGERALTN 558
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFDLI 236
E++QIAGRAGRYG VG V D + + ++ L +P +A + P+ I
Sbjct: 559 SEIRQIAGRAGRYG-HHEVGYVAATDPTAIEPI-RAALAGAPTAPAADTRFYVRPDLTAI 616
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCI 295
+ SL+ ++ HF + + F + EEVL++A +ID+ L + EK++F +
Sbjct: 617 RSVAEEMRTPSLHEVMTHFARATFYAGSPFQPSALEEVLEIARIIDRARLPIEEKFVFSV 676
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLY 355
P+D D+I+ L +++ + G V G L E K+ Y
Sbjct: 677 CPIDRRDEIAMGMLERWSQVRAAGGAVPALRASLAGELDY---------QERTVKLASAY 727
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
+WLS R E+F D E + + IE L + +K
Sbjct: 728 LWLSRRFPETFDDVEAIRHMRGRANDAIEHHLRQTAARK 766
>gi|358056046|dbj|GAA98391.1| hypothetical protein E5Q_05077 [Mixia osmundae IAM 14324]
Length = 759
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 206/426 (48%), Gaps = 54/426 (12%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDEIQ++ RG ++T AL+ + A +H+CG+P+AV LI +I + GD+V + Y
Sbjct: 290 DVTVIDEIQLMALHDRGAAWTGALINLQARNVHVCGEPSAVGLIYKIARQCGDNVVLHEY 349
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+RLSPL LGS ++ GDC+V FSR I++LK+ IE ++ YG LPPE R
Sbjct: 350 DRLSPLTLSKKALGSLKQLERGDCLVAFSRKRIFQLKRDIERDTNLRVAVAYGGLPPEVR 409
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
T QA FND E D+++ SDA+GMGLNL++ R+IFS M+K+DG L VP KQIAG
Sbjct: 410 TSQAKSFNDG--EVDIMIGSDALGMGLNLHVRRMIFSAMEKWDGERAIPLNVPLTKQIAG 467
Query: 189 RAGRYGSKFPV------------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
RAGRYG +F V G VT L S+DLP L ++ P+ L A P +
Sbjct: 468 RAGRYGKQFLVEGRPVDPPEKSQGFVTTLRSDDLPFLETAINAPARRLHVAIWGPGGKHV 527
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEKYLFC 294
L P+ LE + L + LK+ +D L E+ +
Sbjct: 528 DRLKLLFPEDHDTAELEQLTLDLTLFRPHLSTPRKAPGNLKMLDNVDTSLLTPRERRVCL 587
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ-------------------- 334
++PV + F T+ + + +R+ LQ
Sbjct: 588 LAPVPKRR--AEDAFRIFVTSVANVRTLLVRDYIAQSGLQDALAEIFELLSVDCSDSSRP 645
Query: 335 -------VPKTQAALRE---------LESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
V T + +R +E++H L LY+WLS RL F DR A S + +
Sbjct: 646 VFDVAKTVGLTASDIRTVMNSDNTVIMENLHACLTLYLWLSLRLPLVFADRLTANSYRNM 705
Query: 379 CSMLIE 384
+++
Sbjct: 706 IEQILQ 711
>gi|302655081|ref|XP_003019335.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
gi|291183051|gb|EFE38690.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
Length = 766
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 210/395 (53%), Gaps = 34/395 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+++ + G
Sbjct: 294 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMG 353
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 354 DTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIV 413
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL
Sbjct: 414 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNL---------------------- 451
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
Q +G A K VG VTCLD DLP + +++ + L++AG+ P +I Y
Sbjct: 452 ---AAQSSGSANG-NEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLDSVIDNY 507
Query: 240 SRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISP 297
S + P + +G + LE ++ +F ++ ++D + L + +K +F +P
Sbjct: 508 SNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAP 567
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QAALRELESIHKVL 352
+ D + ++ + FA ++ +L +I L P + + LR LE++H+ L
Sbjct: 568 LRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDRPVSGDDKEYLRSLEALHRSL 627
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LY+WL +R F DR LA K + + ++ L
Sbjct: 628 ILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 662
>gi|209542618|ref|YP_002274847.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530295|gb|ACI50232.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 815
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 218/403 (54%), Gaps = 25/403 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD +
Sbjct: 388 DVAMIDEAQMLSDPDRGAAWTAAIMGAPARHLFVLGAPDCIPMVRRIAELCGDPLDEVHL 447
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER PLV + P+ +++ D ++ FSR + L+ A+ +RG+ + ++VYG+L PE R
Sbjct: 448 ERKGPLVTASEPV-RLQDLKPHDALIAFSRREVLDLRAALLARGRRV-AVVYGALSPEVR 505
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFND E D+L+A+DAIGMGLNL I R+IF+ ++KFDG + RDL EVKQI G
Sbjct: 506 RAEAQRFND--GEADILIATDAIGMGLNLTIRRVIFTALRKFDGTQTRDLNAQEVKQIGG 563
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF----PNFDLIYMYSRLHP 244
RAGRYG K G V L ++++ +P E A L P+ D+I +
Sbjct: 564 RAGRYG-KHEQGVVAVLAGAGSASFIRAMMA-APPAELADLRPQVQPDADIIQAVAAEIG 621
Query: 245 DSSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDM 300
SL+G+L + A L NY AN E+ +AT ++ + L L +++++ + PVD
Sbjct: 622 SESLFGVLAR-IRRAVLRPDDPNYRLANMEQAFAIATALEGVSGLSLAQRWVYAMCPVDD 680
Query: 301 NDDISSQGLTQFATNYSK-KGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
D+ Q L +A +++ + +V P + + + L E HK L + WLS
Sbjct: 681 RDN-GIQRLIHWAADHAAGRPVVPPGPGRLPPPDRAERIE--LERAEKRHKRLVAWRWLS 737
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLE------RLGWQKPR 396
R +++P RE A A + IE+ L R G ++PR
Sbjct: 738 LRFPDAYPAREDAEDATARLNDWIEDVLRQQSSRSRAGGEEPR 780
>gi|162148002|ref|YP_001602463.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786579|emb|CAP56161.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
Length = 821
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 218/403 (54%), Gaps = 25/403 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G A L + G P +P++++I ++ GD +
Sbjct: 394 DVAMIDEAQMLSDPDRGAAWTAAIMGAPARHLFVLGAPDCIPMVRRIAELCGDPLDEVHL 453
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER PLV + P+ +++ D ++ FSR + L+ A+ +RG+ + ++VYG+L PE R
Sbjct: 454 ERKGPLVTASEPV-RLQDLKPHDALIAFSRREVLDLRAALLARGRRV-AVVYGALSPEVR 511
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFND E D+L+A+DAIGMGLNL I R+IF+ ++KFDG + RDL EVKQI G
Sbjct: 512 RAEAQRFND--GEADILIATDAIGMGLNLTIRRVIFTALRKFDGTQTRDLNAQEVKQIGG 569
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF----PNFDLIYMYSRLHP 244
RAGRYG K G V L ++++ +P E A L P+ D+I +
Sbjct: 570 RAGRYG-KHEQGVVAVLAGAGSASFIRAMMA-APPAELADLRPQVQPDADIIQAVAAEIG 627
Query: 245 DSSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDM 300
SL+G+L + A L NY AN E+ +AT ++ + L L +++++ + PVD
Sbjct: 628 SESLFGVLAR-IRRAVLRPDDPNYRLANMEQAFAIATALEGVSGLSLAQRWVYAMCPVDD 686
Query: 301 NDDISSQGLTQFATNYSK-KGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
D+ Q L +A +++ + +V P + + + L E HK L + WLS
Sbjct: 687 RDN-GIQRLIHWAADHAAGRPVVPPGPGRLPPPDRAERIE--LERAEKRHKRLVAWRWLS 743
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLE------RLGWQKPR 396
R +++P RE A A + IE+ L R G ++PR
Sbjct: 744 LRFPDAYPAREDAEDATARLNDWIEDVLRQQSSRSRAGGEEPR 786
>gi|340053225|emb|CCC47513.1| putative RNA helicase, fragment, partial [Trypanosoma vivax Y486]
Length = 623
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 221/400 (55%), Gaps = 41/400 (10%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+ + RG+++TRALLG+ A E+HLCG+ A+PL++ +L T +
Sbjct: 217 DYQVDIGVIDEVQMISERDRGWAWTRALLGLPAREIHLCGEERAIPLVRNLLYKTRELSG 276
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
+++ S++RL PL + G ++ GDC+V FSR +I+ K +E + +YGS
Sbjct: 277 LRLVSHKRLVPLDICSSLNGDLKQVENGDCLVCFSRKSIFGFKSKLEKTPGVVPHYIYGS 336
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN+ SS+ VL+++DAI GLN+ I R++F+TMKKFDG E
Sbjct: 337 MPFSVREAQAQAFNNGVNSVVHGVSSQKHVLISTDAIAYGLNMGIERVVFTTMKKFDGKE 396
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFP 231
+ L+ Q+AGRAGR+G P+G T L ++DLPLL + P+P L+ AGL P
Sbjct: 397 TKTLSQATTVQVAGRAGRFGVSRTKPLGLCTTLHADDLPLLKDAFSGLPAP-LQKAGLLP 455
Query: 232 NFDLIYMYSRLH-----------PDSS-LYGILEHFLENAKLSENYFFAN-CEEVLKVAT 278
D++ +Y ++ PDSS Y ++ F + + S+ +F + +L++A
Sbjct: 456 TADILELYVGMNSTTKAAVDVGIPDSSAFYERIKDFARHCQSSDLFFPCDISRSLLEIAR 515
Query: 279 VIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQV 335
V++ + L L ++ LFC P+ + L FA ++ V+LR E F + +
Sbjct: 516 VLESVHDLTLSDRILFCYVPLSDRSSATLNLLRAFAQEHAAGNPVRLRIDEKFESLSYEY 575
Query: 336 PK---------TQAALRELESIHKVLDLYVWLSFRLEESF 366
+ Q L +LESI++ ++Y WL++R +F
Sbjct: 576 DRLGEMADLSTVQRILEQLESIYRQAEMYCWLAWRFGRTF 615
>gi|71021827|ref|XP_761144.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
gi|46100582|gb|EAK85815.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
Length = 891
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 187/343 (54%), Gaps = 25/343 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D VIDEIQM+G RG+++T A+LG+ A ELHLCG+ + +PLI+ I + G
Sbjct: 402 MVATTRAVDVGVIDEIQMIGDAQRGYAWTNAVLGLAAKELHLCGEASVIPLIENIAKACG 461
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + Y+RL+PL + + IQ GDC+V FSR I+ LK IE R C++
Sbjct: 462 DHLTIHRYDRLTPLSVADESIHNDLGQIQKGDCVVAFSRSGIFALKSDIEKRTGLRCAVA 521
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG+LPPET+ QA FN+ + DV+VASDAIGMGLNL I R++F T+ K++G E L+
Sbjct: 522 YGALPPETKAEQAKLFNEG--KLDVMVASDAIGMGLNLRIKRVVFDTLTKWNGKEEVTLS 579
Query: 180 VPEVKQIAGRAGRYGSKFP-------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
++KQIAGRAGRYG++ G VT +L +L +L P + A + P+
Sbjct: 580 ASQIKQIAGRAGRYGTQDKETNKAELGGLVTTRHEHELEILRAALASPLLPITRAAIEPS 639
Query: 233 FDLIYMYSRLHPDSSLYG-----ILEHFLENAKL-----SENYFFANCEEVLKVATVIDQ 282
+ + S + P S+ G L + L S N+F ++ + L ++ +I+
Sbjct: 640 SETLGQLSAMLP--SVNGKSGPRTLSQLYADVALLSRIDSTNFFLSDFSQKLTISPLIES 697
Query: 283 LP---LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 322
L + E+ F +P + D+ L + +S+ G+V
Sbjct: 698 ASNGMLTVAERETFSNAPANTRDERVVAFLCKAVRQFSRGGLV 740
>gi|302495911|ref|XP_003009969.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
gi|291173491|gb|EFE29324.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
Length = 796
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 210/395 (53%), Gaps = 34/395 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+++ + G
Sbjct: 290 MVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMG 349
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE +IV
Sbjct: 350 DTLEIHNYKRLNPLKTMTSSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIV 409
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R +QA FND ++++D LVASDAIGMGLNL + +G E
Sbjct: 410 YGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLAA-----QSSSSTNGNE----- 459
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
K VG VTCLD DLP + +++ + L++AG+ P +I Y
Sbjct: 460 ----------------KENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLDSVIDNY 503
Query: 240 SRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISP 297
S + P + +G + LE ++ +F ++ ++D + L + +K +F +P
Sbjct: 504 SNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAP 563
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKT---QAALRELESIHKVL 352
+ D + ++ + FA ++ +L +I L P + + LR LE++H+ L
Sbjct: 564 LRATDPVMARVIKAFAECVGQQKSGRLLDIPELDLEILDRPVSGDDKEYLRSLEALHRSL 623
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LY+WL +R F DR LA K + + ++ L
Sbjct: 624 ILYLWLGYRFGGVFTDRTLATHAKEMAEVKMDRTL 658
>gi|240137314|ref|YP_002961783.1| hypothetical protein MexAM1_META1p0574 [Methylobacterium extorquens
AM1]
gi|418061704|ref|ZP_12699547.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
gi|240007280|gb|ACS38506.1| conserved hypothetical protein with putative ATP-dependent helicase
domain [Methylobacterium extorquens AM1]
gi|373564756|gb|EHP90842.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
Length = 714
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 29/403 (7%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAANE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V ++ER SPLV L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FST++K+DGV+ R LT
Sbjct: 437 ALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSTVRKWDGVQERVLTN 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFDLI 236
E++QIAGRAGRYG + VG V + + + ++ L +P +A + P+ I
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATEPNAVEPI-RTALAGAPTAPAADTRFYVRPDLTAI 552
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCI 295
+ SLY ++ HF + + F + EEVL++A +ID+ L + EK++F +
Sbjct: 553 RSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALEEVLEIARIIDRARLPIEEKFIFSV 612
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESIHKVLDL 354
P++ D+I+ L +++ ++ GT VP +A++ EL+ + + L
Sbjct: 613 CPINRRDEIAMGMLERWS------------QVRAAGT-TVPALRASMTGELDYQERTVKL 659
Query: 355 ---YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WL+ R E+F D E + + IE L++ +K
Sbjct: 660 ASAYLWLARRFPETFDDIEATRHMRRYANDAIEHHLQQTATRK 702
>gi|72387850|ref|XP_844349.1| RNA helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359316|gb|AAX79756.1| RNA helicase, putative [Trypanosoma brucei]
gi|70800882|gb|AAZ10790.1| RNA helicase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 626
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 217/423 (51%), Gaps = 39/423 (9%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+G RG+++TRA+LG+ A E+HLCG+ A+PLI+ +L T +
Sbjct: 204 DYQIDVGVIDEVQMIGDGDRGWAWTRAILGLPAREIHLCGEERAIPLIRSLLYKTRELKG 263
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
+++ ++RL+PL G ++ GDC+V FSR I+ +K +E +YGS
Sbjct: 264 LRLVPHQRLAPLRTSAALGGDLRQVENGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGS 323
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN S+ VLV++DAI GLN++I RIIF +MKKFDG +
Sbjct: 324 MPFAVREAQADAFNRGVREAVEGKDSKKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQ 383
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L Q+AGRAGR+G G T L ++D P L ++ L+ AGL P
Sbjct: 384 MTSLPQATTVQVAGRAGRFGVLRANTFGRCTTLHADDFPTLESAINARLSPLQRAGLLPT 443
Query: 233 FDLIYMYSRLHPDSS------------LYGILEHFLENAKLSENYFFAN-CEEVLKVATV 279
D++ +Y ++ D YG ++ F K S+ +F + +L+VA
Sbjct: 444 ADILELYVTMNSDKKRLKTSGVVPQDVFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARE 503
Query: 280 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQVP 336
+D +P L L ++ LFC PV+ + + L FA +++ G V+LR E F Q
Sbjct: 504 LDAVPGLSLTDRILFCYVPVNTRNKDTFDLLRCFARDHATGGPVRLRIDEEFEQLVGQCA 563
Query: 337 ---------KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ L +E +++ ++Y WLS+R +F E ++ K ++E L
Sbjct: 564 HLKTHKDSERAHRILSRMEDLYRHAEMYCWLSWRFGNTFIYLEAGSALKERIVAKMDELL 623
Query: 388 ERL 390
RL
Sbjct: 624 RRL 626
>gi|163850244|ref|YP_001638287.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163661849|gb|ABY29216.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 714
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 29/403 (7%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAANE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V ++ER SPLV L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVINFERKSPLVLLDDPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FST++K+DGV+ R LT
Sbjct: 437 ALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSTVRKWDGVQERVLTN 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFDLI 236
E++QIAGRAGRYG + VG V + + + ++ L +P +A + P+ I
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI-RTALAGAPTAPAADTRFYVRPDLTAI 552
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCI 295
+ SLY ++ HF + + F + EEVL++A +ID+ L + EK++F +
Sbjct: 553 RSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALEEVLEIARIIDRARLPIEEKFIFSV 612
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESIHKVLDL 354
P++ D+I+ L +++ ++ GT VP +A++ EL+ + + L
Sbjct: 613 CPINRRDEIAMGMLERWS------------QVRAAGT-TVPALRASMTGELDYQERTVKL 659
Query: 355 ---YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WL+ R E+F D E + + IE L++ +K
Sbjct: 660 ASAYLWLARRFPETFDDIEATRHMRRYANDAIEHHLQQTATRK 702
>gi|296536910|ref|ZP_06898948.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296262764|gb|EFH09351.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 505
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 221/392 (56%), Gaps = 21/392 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
S D A+IDE Q+L + RG ++T AL+G+ A E+ + G P VP++++I Q+ GD+V+
Sbjct: 115 SPVDVAIIDEAQLLHDRDRGAAWTAALMGVPAREVFVLGAPECVPMVKRIAQLCGDEVEE 174
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ +R PL P+ ++ GD +V FSR + L++A+ +RG+ + ++VYG+L P
Sbjct: 175 ITLQRKGPLHASTKPV-PMGELKQGDALVAFSRRDVMDLREALVARGRKV-AVVYGALSP 232
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R +A RF + E D++VA+DAIGMGLNL I R++FST++KFDG E R+LT EVKQ
Sbjct: 233 EVRRAEAARFRN--GEADIIVATDAIGMGLNLPIRRVVFSTLRKFDGEERRELTSQEVKQ 290
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLE-SAGLFPNFDLIYMYSRL 242
I GRAGRYG G V+ L P +++LE P+P E + P+ D+I +
Sbjct: 291 IGGRAGRYG-HHEGGVVSVLAGGGDPGFVQAMLEAPPAPPEELRPQVQPDADIIAAVAAE 349
Query: 243 HPDSSLYGILEHFLENA--KLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 299
SL+G+L K NY A+ + + +A+ ID + L L +++ + + PVD
Sbjct: 350 IGTDSLFGVLARIKRAVLRKDDPNYRLADLTQQMAIASAIDGVAGLSLADRWTYAMCPVD 409
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPK--TQAALRELESIHKVLDLY 355
D+ ++ L ++A ++ R + P G L P+ T L+ E +HK L +
Sbjct: 410 ERDNGVTR-LARWAVDHGGG-----RPVAPPLAGRLPPPERATGEELQRAEKVHKRLVAW 463
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
WL+ R ++ DR+ A ++ IE+ L
Sbjct: 464 RWLALRFPAAYLDRDEAEAETERLDSWIEDVL 495
>gi|254559493|ref|YP_003066588.1| hypothetical protein METDI0942 [Methylobacterium extorquens DM4]
gi|254266771|emb|CAX22570.1| conserved hypothetical protein; putative ATP-dependent helicase
domain [Methylobacterium extorquens DM4]
Length = 714
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 29/403 (7%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAANE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V ++ER SPLV L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FST++K+DGV+ R LT
Sbjct: 437 ALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSTVRKWDGVQERVLTN 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFDLI 236
E++QIAGRAGRYG + VG V + + + ++ L +P +A + P+ I
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI-RTALAGAPTAPAADTRFYVRPDLTAI 552
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCI 295
+ SLY ++ HF + + F + EEVL++A +ID+ L + EK++F +
Sbjct: 553 RSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALEEVLEIARIIDRARLPIEEKFIFSV 612
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESIHKVLDL 354
P++ D+I+ L +++ ++ GT VP +A++ EL+ + + L
Sbjct: 613 CPINRRDEIAMGMLERWS------------QVRAAGT-TVPALRASVTGELDYQERTVKL 659
Query: 355 ---YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WL+ R E+F D E + + IE L++ +K
Sbjct: 660 ASAYLWLARRFPETFDDIEATRHMRRHANDAIEHHLQQTATRK 702
>gi|218528785|ref|YP_002419601.1| helicase [Methylobacterium extorquens CM4]
gi|218521088|gb|ACK81673.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 714
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 224/403 (55%), Gaps = 29/403 (7%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAANE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V ++ER SPLV L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FST++K+DGV+ R LT
Sbjct: 437 ALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSTVRKWDGVQERVLTN 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFDLI 236
E++QIAGRAGRYG + VG V + + + ++ L +P +A + P+ I
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI-RTALAGAPTAPAADTRFYVRPDLTAI 552
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCI 295
+ SLY ++ HF + + F + EEVL++A +ID L + EK++F +
Sbjct: 553 RSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALEEVLEIARIIDWARLPIEEKFIFSV 612
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESIHKVLDL 354
P++ D+I+ L +++ ++ GT VP +A++ EL+ + + L
Sbjct: 613 CPINRRDEIAMGMLERWS------------QVRAAGT-TVPALRASVTGELDYQERTVKL 659
Query: 355 ---YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WL+ R E+F D E + + IE L++ +K
Sbjct: 660 ASAYLWLARRFPETFDDIEATRHMRRYANDAIEHHLQQTATRK 702
>gi|410943887|ref|ZP_11375628.1| RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 821
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 24/390 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G +PL+++I ++ D V
Sbjct: 392 DVAIIDEAQMLADPDRGAAWTAAIMGVPARHVFILGAADCIPLVKRIAELCDDPVDEIHL 451
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL S + GD ++ FSR + ++ + +RG+ + ++VYG+L PE R
Sbjct: 452 ERKSPLKAGGTL--HLSELTAGDAVIAFSRREVLDMRAELMARGRRV-AVVYGALSPEVR 508
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN S + D+L+A+DAIGMGLNL+I R++FS ++KFDG + RDL EVKQI G
Sbjct: 509 RAEAARFN--SGDADILIATDAIGMGLNLSIRRVVFSALRKFDGRQTRDLISQEVKQIGG 566
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGR+G K G V L P + +L P P+ E L P+ D++ +
Sbjct: 567 RAGRFG-KHEEGLVCVLAESGSPTFVRQMLAAPPEPVTELRPLVQPDSDIVRAVAEEIGS 625
Query: 246 SSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L ++ A L NY A+ E+ L++A ++ + L L ++ + + P+D
Sbjct: 626 DSLYGVLTR-IKRAVLRPDDPNYRLADMEQSLEIAAALEGVEGLDLTTRWTYAMCPIDER 684
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ Q L +A +++ R + PGT ++P + A RE E HK L + W
Sbjct: 685 DN-GIQRLVSWAADHAAG-----RPVPPPGTGRLPHPEQAGREELERAEKRHKRLVAWRW 738
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L+ R E++P ++ A +I + IE+ L
Sbjct: 739 LALRFPEAYPAQQNAEINTSILNDWIEQVL 768
>gi|393769812|ref|ZP_10358330.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392724769|gb|EIZ82116.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 713
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/402 (34%), Positives = 220/402 (54%), Gaps = 27/402 (6%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + G+
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVVVCGSDDALSYVRRAAEAAGE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V + R SPL+ L+ P+ ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVIPFTRKSPLLLLDAPV-PLEKVEPGDAVVAFSRRAVHENREILVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +ATRF + E +VLV +DAIGMGLNL + RI+FST++K+DG + R LT
Sbjct: 437 ALSPEVRRAEATRFR--TGEANVLVTTDAIGMGLNLGPLRRIVFSTVRKWDGTKERGLTN 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGLF--PNFDLIY 237
E++QIAGRAGRYG + VG V D+ + + +L P+ + F P+ I
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATDAIAIEPIRIALSGAPTAPAADSRFFVRPDLGAIR 553
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCIS 296
+ SL+ +L HF + + F + EE+L+VA VID+ L + EK+ F +
Sbjct: 554 SVAEEMQTQSLHEVLTHFARATFYAGSPFQPSALEEILEVARVIDRARLPIEEKFAFSVC 613
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR-ELESIHKVLDL- 354
P++ D+I+ L +++ Q R T VP +A+L EL+ + + L
Sbjct: 614 PINRRDEIAMGMLERWS---------QARAART----TVPALRASLTGELDYQERTVRLA 660
Query: 355 --YVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WLS R ++F D E + + IE+ L +K
Sbjct: 661 SAYLWLSRRFPDTFDDVEAIRHMRGRANDAIEQHLRETATRK 702
>gi|407404477|gb|EKF29914.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 226/421 (53%), Gaps = 37/421 (8%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+ + RG+++TRALLG+ A E+HLCG+ A+PLI+++L T +
Sbjct: 203 DYQIDVGVIDEVQMIADRDRGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTRELQR 262
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++V ++RL PL G I+ GD +V FSR AI+ +KK +E+ +YGS
Sbjct: 263 LEVVPHKRLVPLEVSPSLDGDLRRIENGDTLVCFSRKAIFDMKKKLENISGMAPHCIYGS 322
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN+ S + VL+++DAI GLN++I RIIF++M+KFDG +
Sbjct: 323 MPFSVREAQADAFNNGTRDVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQ 382
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L + Q+AGRAGR+G G T LDS D +L +++ P L+ AGL P
Sbjct: 383 MVVLPQATILQVAGRAGRFGVLRSHKFGRCTTLDSNDFAVLREAVNSRLPSLQKAGLLPT 442
Query: 233 FDLIYMYSRLHPD-----------SSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVI 280
+++ +Y RL +S Y + F E + S+ +F + +L+VA +
Sbjct: 443 AEVLELYIRLREAEEGNRVTENNLASFYQRMREFSECCQASDLFFPCDLSRSLLQVAKEL 502
Query: 281 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS--KKGIVQLREIFTPGTLQ--- 334
+ + L L ++ LFC P++ + L FA +++ ++ ++++ E F Q
Sbjct: 503 EAVTDLSLSDRILFCYVPLNDRGKETYDLLRAFAYDHAAGRQVVLRIDEDFERLVKQCDL 562
Query: 335 -----VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +E +++ ++Y WL++R ++F E A + K ++ +EE L+
Sbjct: 563 VCSGDTRRAHQVLTRMEHLYRAAEMYCWLAWRFGKTFVHLETATALKERAALKMEEILQH 622
Query: 390 L 390
L
Sbjct: 623 L 623
>gi|167519643|ref|XP_001744161.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777247|gb|EDQ90864.1| predicted protein [Monosiga brevicollis MX1]
Length = 304
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 147/218 (67%), Gaps = 1/218 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D YD AVIDE Q +G RG+++T A+LG A+ L+L D +A L+Q I +V G
Sbjct: 87 MTDFSRHYDVAVIDECQNIGSAERGWAWTNAILGARADVLYLIEDGSATQLLQNIAKVCG 146
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DDV+V ++RL+PL PL +FS+++ GDC++ F+R ++ LK E+ C++VY
Sbjct: 147 DDVEVIDHQRLAPLHVQREPLINFSHLREGDCLIGFNRRELFNLKAQAEAATGLKCAVVY 206
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPP+ R QAT FND S++ +L ASDAIGMGLN +I R+IFST+ KFDG + R L
Sbjct: 207 GALPPDVRKAQATLFNDPHSDYKLLAASDAIGMGLNFDIGRVIFSTVWKFDGTQRRVLRP 266
Query: 181 PEVKQIAGRAGRYGSKFPV-GEVTCLDSEDLPLLHKSL 217
E++QIAGRAGRYGS++ V GEV + D +L ++L
Sbjct: 267 TELRQIAGRAGRYGSRYAVGGEVLAMSESDTEVLQRAL 304
>gi|71655679|ref|XP_816399.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70881524|gb|EAN94548.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 223/421 (52%), Gaps = 37/421 (8%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+ + RG+++TRALLG+ A E+HLCG+ A+PLI+++L T +
Sbjct: 203 DYQIDVGVIDEVQMIADRDRGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTHELQR 262
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++V ++RL PL G I+ GD +V FSR AI+ +KK +E+ +YGS
Sbjct: 263 LEVVPHKRLVPLEVSPSLDGDLRRIENGDTLVCFSRRAIFDMKKKLENISGMAPHCIYGS 322
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN+ S + VL+++DAI GLN++I RIIF++M+KFDG +
Sbjct: 323 MPFSVREAQADAFNNGTRDVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQ 382
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L + Q+AGRAGR+G G T LDS D +L +++ P L+ AGL P
Sbjct: 383 MVTLPQATILQVAGRAGRFGVLRSHKFGRCTTLDSNDFAVLCEAVNSRLPSLQKAGLLPT 442
Query: 233 FDLIYMYSRLHPD-----------SSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVI 280
+++ +Y RL +S Y + F E + S+ +F + +L+VA +
Sbjct: 443 AEVLELYIRLREAEEGGRVTENNLASFYQRMREFSECCQASDLFFPCDLSRSLLQVAKEL 502
Query: 281 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQ--- 334
+ + L L ++ LFC P++ + L F +++ V LR E F Q
Sbjct: 503 EAVTDLSLSDRILFCYVPLNDRGKETYDLLRAFGHDHAAGRHVVLRIDEEFERLVKQCDL 562
Query: 335 -----VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +E +++V ++Y WL++R ++F E A + K ++ +EE L+
Sbjct: 563 VCSGDTRRAHQVLTRMEHLYRVAEMYCWLAWRFGKTFVHLETATALKERAALKMEEILQH 622
Query: 390 L 390
L
Sbjct: 623 L 623
>gi|453329295|dbj|GAC88487.1| RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 815
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 214/390 (54%), Gaps = 24/390 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G +PL+++I ++ D V
Sbjct: 387 DVAIIDEAQMLADPDRGAAWTAAIMGVPARHVFILGAADCIPLVKRIAELCDDPVDEIHL 446
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL + S + GD ++ FSR + ++ + +RG+ + ++VYG+L PE R
Sbjct: 447 ERKSPLKAGGTL--NLSELTAGDAVIAFSRREVLDMRAELMARGRRV-AVVYGALSPEVR 503
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN+ + D+L+A+DAIGMGLNL+I R++FS ++KFDG + RDL EVKQI G
Sbjct: 504 RAEAARFNNGDA--DILIATDAIGMGLNLSIRRVVFSALRKFDGRQTRDLISQEVKQIGG 561
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGR+G K G V L P + +L P P+ E L P+ D++ +
Sbjct: 562 RAGRFG-KHEEGLVCVLAESGSPTFVRQMLAAPPEPVTELRPLVQPDSDIVRAVAEEIGS 620
Query: 246 SSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L ++ A L NY A+ E+ L++A ++ + L L ++ + + P+D
Sbjct: 621 DSLYGVLTR-IKRAVLRPDDPNYRLADMEQSLEIAAALEGVEGLDLTARWTYAMCPIDER 679
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ Q L +A +++ R + PGT ++P + A RE E HK L + W
Sbjct: 680 DN-GIQRLVSWAADHAAG-----RPVPPPGTGRLPHPEQAGREELERAEKRHKRLVAWRW 733
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L+ R +++P ++ A +I + IE+ L
Sbjct: 734 LALRFPDAYPAQQNAEINTSILNDWIEQVL 763
>gi|342180609|emb|CCC90085.1| putative RNA helicase [Trypanosoma congolense IL3000]
Length = 620
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 226/423 (53%), Gaps = 39/423 (9%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT--GDD 62
DY D VIDE+QM+G + RG+++ RA+LG+ A E+HLCG+ A+PL++++L T +
Sbjct: 198 DYQVDVGVIDEVQMMGDRDRGWAWARAILGLPAREIHLCGEGRAIPLVRKLLHRTREANS 257
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
+++ S+ERL PL G ++ GDC+V FSR AI+ LK+ + +YGS
Sbjct: 258 LRLMSHERLVPLEVSPTLNGDLRLVENGDCLVCFSRRAIFTLKERLGRLPGVTPHYIYGS 317
Query: 123 LPPETRTRQATRFN----DA----SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN DA S E VLV++DAI GLN++I RIIF++MKKFDG +
Sbjct: 318 MPFSVREAQADAFNRGVRDAIQRGSVEKHVLVSTDAIAYGLNMSIERIIFTSMKKFDGKQ 377
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L + Q+AGRAGR+G +G T L +++ L +L P P++ +GL P
Sbjct: 378 MVALPPATMVQVAGRAGRFGVLRASALGRCTTLHADEFQALRDALGAPLPLVHKSGLLPT 437
Query: 233 FDLIYMYSRL------------HPDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATV 279
D++ +Y+ + + Y ++ F +LS+ +F + +L+VA
Sbjct: 438 ADILELYTEMVAREEAGKTSGGDGRGTFYERVKDFSGQCQLSDIFFPCDLSRSLLQVAKE 497
Query: 280 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQVP 336
+D++P L L ++ LFC P++ D + L FA ++ G V+LR E F + Q
Sbjct: 498 LDRVPGLSLSDRILFCYVPLNDRDKETFDLLRSFAQDHVDGGPVRLRIDEEFGKLSEQCE 557
Query: 337 ---------KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ L +E +++ ++Y WL++R +F + K + +E+ L
Sbjct: 558 HLNSGVGDRRVHEMLSRMEGLYRHAEMYCWLAWRFGSTFTFLGEGLALKERLAAKMEQLL 617
Query: 388 ERL 390
++L
Sbjct: 618 QKL 620
>gi|261327511|emb|CBH10486.1| RNA helicase, putative [Trypanosoma brucei gambiense DAL972]
Length = 626
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 216/423 (51%), Gaps = 39/423 (9%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+G RG+++TRA+LG+ A E+HLCG+ A+PLI+ +L T +
Sbjct: 204 DYQIDVGVIDEVQMIGDGDRGWAWTRAILGLPAREIHLCGEERAIPLIRSLLYKTRELKG 263
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
+++ ++RL+PL G ++ GDC+V FSR I+ +K +E +YGS
Sbjct: 264 LRLVPHQRLAPLRTSAALGGDLRQVENGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGS 323
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN S+ VLV++DAI GLN++I RIIF +MKKFDG +
Sbjct: 324 MPFAVREAQADAFNRGVREAVEGKDSKKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQ 383
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L Q+AGRAGR+G G T L ++D P L ++ L+ AGL P
Sbjct: 384 MTSLPQATTVQVAGRAGRFGVLRANTFGRCTTLHADDFPTLESAINARLSPLQRAGLLPT 443
Query: 233 FDLIYMYSRLHPDSS------------LYGILEHFLENAKLSENYFFAN-CEEVLKVATV 279
D++ +Y ++ D YG ++ F K S+ +F + +L+VA
Sbjct: 444 ADILELYVTMNSDKKRLKTSGVVPQDVFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARE 503
Query: 280 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQVP 336
+D + L L ++ LFC PV+ + + L FA +++ G V+LR E F Q
Sbjct: 504 LDAVTGLSLTDRILFCYVPVNTRNKDTFDLLRCFARDHATGGPVRLRIDEEFEQLVGQCA 563
Query: 337 ---------KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ L +E +++ ++Y WLS+R +F E ++ K ++E L
Sbjct: 564 HLKTHKDSVRAHRILSRMEDLYRHAEMYCWLSWRFGNTFIYLEAGSALKERIVAKMDELL 623
Query: 388 ERL 390
RL
Sbjct: 624 RRL 626
>gi|407850937|gb|EKG05094.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 220/421 (52%), Gaps = 37/421 (8%)
Query: 7 DY--DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 62
DY D VIDE+QM+ + RG+++TRALLG+ A E+HLCG+ A+PLI+++L T +
Sbjct: 203 DYQIDVGVIDEVQMIADRDRGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTHELQR 262
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++V + RL PL G I+ GD +V FSR AI+ +KK +ES +YGS
Sbjct: 263 LEVVPHRRLVPLEVSPSLDGDLRRIENGDTLVCFSRRAIFDMKKKLESISGMAPHCIYGS 322
Query: 123 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
+P R QA FN+ S + VL+++DAI GLN++I RIIF++M+KFDG +
Sbjct: 323 MPFSVREAQADAFNNGTRDVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQ 382
Query: 175 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ L + Q+AGRAGR+G G T LD D +L +++ P L+ AGL P
Sbjct: 383 MVTLPQATILQVAGRAGRFGVLRTHKFGRCTTLDLNDFAVLREAVNSRLPSLQKAGLLPT 442
Query: 233 FDLIYMYSRLHPD-----------SSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVI 280
+++ +Y RL SS Y + F E + S+ +F + +L+VA +
Sbjct: 443 AEVLELYIRLREAEEGSRVTENNLSSFYQRMREFSECCQASDLFFPCDLSRSLLQVAKEL 502
Query: 281 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR--EIFTPGTLQ--- 334
+ + L L ++ LFC P++ + L F +++ V LR E F Q
Sbjct: 503 EAVTDLSLSDRILFCYVPLNDRGKETYDLLRAFGHDHAAGRHVVLRIDEEFERLVKQCDL 562
Query: 335 -----VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
+ L +E +++ ++Y WL++R ++F E A + K ++ +EE L+
Sbjct: 563 VCSGDTRRAHQVLTRMEHLYRAAEMYCWLAWRFGKTFVHLETATALKERAALKMEEILQH 622
Query: 390 L 390
L
Sbjct: 623 L 623
>gi|414341174|ref|YP_006982695.1| RNA helicase [Gluconobacter oxydans H24]
gi|411026509|gb|AFV99763.1| putative RNA helicase [Gluconobacter oxydans H24]
Length = 815
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 213/390 (54%), Gaps = 24/390 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G +PL+++I ++ D V
Sbjct: 387 DVAIIDEAQMLADPDRGAAWTAAIMGVPARHVFILGAADCIPLVKRIAELCDDPVDEIHL 446
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL S + GD ++ FSR + ++ + +RG+ + ++VYG+L PE R
Sbjct: 447 ERKSPLKAGGTL--HLSELTAGDAVIAFSRREVLDMRAELMARGRRV-AVVYGALSPEVR 503
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN+ + D+L+A+DAIGMGLNL+I R++FS ++KFDG + RDL EVKQI G
Sbjct: 504 RAEAARFNNGDA--DILIATDAIGMGLNLSIRRVVFSALRKFDGRQTRDLISQEVKQIGG 561
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPD 245
RAGR+G K G V L P + +L P P+ E L P+ D++ +
Sbjct: 562 RAGRFG-KHEEGLVCVLAESGSPTFVRQMLAAPPEPVTELRPLVQPDSDIVRAVAEEIGS 620
Query: 246 SSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SLYG+L ++ A L NY A+ E+ L++A ++ + L L ++ + + P+D
Sbjct: 621 DSLYGVLTR-IKRAVLRPDDPNYRLADMEQSLEIAAALEGVEGLDLTARWTYAMCPIDER 679
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE----LESIHKVLDLYVW 357
D+ Q L +A +++ R + PGT ++P + A RE E HK L + W
Sbjct: 680 DN-GIQRLVSWAADHAAG-----RPVPPPGTGRLPHPEQAGREELERAEKRHKRLVAWRW 733
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L+ R +++P ++ A +I + IE+ L
Sbjct: 734 LALRFPDAYPAQQNAEINTSILNDWIEQVL 763
>gi|403213420|emb|CCK67922.1| hypothetical protein KNAG_0A02330 [Kazachstania naganishii CBS
8797]
Length = 741
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 221/414 (53%), Gaps = 21/414 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D+D V+DEIQM+ + RG+++T ALLG+ E+H+CG+P+ + LI+++ Q+
Sbjct: 316 DFDVVVLDEIQMMADEERGWAWTNALLGVRGKEVHVCGEPSTLELIRKVCQLX-XXXXXN 374
Query: 67 SYERLSPLVPLNVP-LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL L + P LG S ++ GDC+V FS+ I LK IE +++YGSLPP
Sbjct: 375 KYERLGDLTVESQPILGQMSKLRKGDCLVAFSKKKILDLKLKIERETGFSVAVIYGSLPP 434
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
ETR +QA FN S ++D+LVASDAIGMGLNL+I R+IF+T KKF+G E+ LT ++Q
Sbjct: 435 ETRVQQADLFN--SGKYDILVASDAIGMGLNLSIDRVIFTTDKKFNGSEMIPLTNSNIRQ 492
Query: 186 IAGRAGRY-------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IY 237
I GRAGR+ G+ G +T L + + + P L++A ++P ++
Sbjct: 493 IGGRAGRFKEQSSTGGNSRSQGHITGWTHAVLKSVREGIESPVEPLQNAIIWPTDEICTQ 552
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV--IDQLP-LRLHEKYLFC 294
+ R P++ L +LE F S + F + K+AT+ + +P + +K
Sbjct: 553 LMVRYPPNTKLGYLLEQFAARLAKSRDQVFKLSDLGDKLATIALFEHIPDISFPDKLRLS 612
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL----QVPKTQAALRELESIHK 350
+PV + QF +++ L P L + A L + E+++
Sbjct: 613 TAPVKRLLPLVKAAFIQFCETIAQRRTRGLLSYDFPFHLLDYKGITDEDATLEQYEALYH 672
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRP 404
+ LY WL+ R + F D E A K C +++ E L+RL + P ++ + PRP
Sbjct: 673 TITLYFWLANRYTQYFVDTESARDLKYFCELIVFEKLDRLK-RSPYLQGI-PRP 724
>gi|209965410|ref|YP_002298325.1| RNA helicase RhrA [Rhodospirillum centenum SW]
gi|31322740|gb|AAP22927.1| RhrA [Rhodospirillum centenum]
gi|209958876|gb|ACI99512.1| RNA helicase RhrA [Rhodospirillum centenum SW]
Length = 740
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 208/410 (50%), Gaps = 21/410 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + D AVIDE+QML + RG+++T AL+G+ A ++L G P PL+++ G
Sbjct: 331 MLDPEATVDVAVIDEVQMLADRDRGWAWTAALMGVPAKTVYLLGAPEVRPLVERAAAHLG 390
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ ++V ER PL + L +S++ GD ++ FSR ++ ++ +++RG +++Y
Sbjct: 391 EPLEVVELERKQPLHMIEERL-EWSDVGRGDALIAFSRREVHAVRDTVQARGL-TAAVIY 448
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L P+ R R+A RFN + E DV++A+DAIGMGLNL + R++F+T++KFDGVE+R L
Sbjct: 449 GALAPDVRRREAERFN--TGEADVVIATDAIGMGLNLPVRRVLFTTLEKFDGVEMRSLHP 506
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
EVKQIAGRAGR+G F GE + L + P M +
Sbjct: 507 AEVKQIAGRAGRFG-HFEAGEFGVVGRGTPQALRMIVTRPDTSFGPKTALTVRPTRAMVA 565
Query: 241 RLH---PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
RL SL +++ F + A+ E + K+A V+D+ + +K P
Sbjct: 566 RLAGRVGSHSLSLLIDCFAAARTAGSPFRVADLEPLRKLAAVLDEKEIGFEDKLSLLFVP 625
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE--LESIHKVLDLY 355
D++ D+ ++ + V P L VP L + LE + + DLY
Sbjct: 626 ADLDKDVDARFFHRICRAVETGEAV-------PVGLVVPARVGMLDDMSLEELSRTCDLY 678
Query: 356 VWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
W S + FPDR + ++A S + E L R + TP+PK
Sbjct: 679 YWASRKFPRQFPDRTVVQERRAEVSRRLSEILA----AAARTRGRTPKPK 724
>gi|50556074|ref|XP_505445.1| YALI0F15147p [Yarrowia lipolytica]
gi|49651315|emb|CAG78254.1| YALI0F15147p [Yarrowia lipolytica CLIB122]
Length = 718
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 209/394 (53%), Gaps = 45/394 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + VIDEIQML ++RG+++ A+LG+ A E+HLCG+ + V +I++I+ TG
Sbjct: 318 MIDTNQLMEVCVIDEIQMLNDQSRGWAWLNAVLGVQAKEVHLCGEESVVNMIEKIVAKTG 377
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D +++ YERL L PL S ++ GDC+V FSR ++ ++ IE+ CSI+Y
Sbjct: 378 DTLEINRYERLGTLEMERRPLKSLKEVRAGDCVVAFSRKKVFEFRQEIEATTGKKCSIIY 437
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLT 179
G+LPPETR Q+ FN +E VLVA+DA+GMGLNL+I+RIIF+ ++K+DG+ + L
Sbjct: 438 GALPPETRVTQSRDFNSGVNE--VLVATDAVGMGLNLSINRIIFAAIRKYDGLGDFNLLE 495
Query: 180 VPEVKQIAGRAGRYGSKFP-------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
P+ KQIAGRAGRY K P VG VT + ++ + + L P+ ML + + P+
Sbjct: 496 PPQTKQIAGRAGRY--KVPGSDKVGSVGLVTSMSNQQSKYVAECLAAPTIMLSTLYVKPH 553
Query: 233 FDLIY-MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKY 291
DL + S + + L + + LS +Y + E L+++
Sbjct: 554 DDLFAPLVSGVKGLAKLMARMNQLTD---LSVDYRLPSFESQLELSEA------------ 598
Query: 292 LFCISPVDMNDDISSQGLTQFATNYSKKGI------VQLREIFTPGTLQVPKTQ------ 339
C + ++ ++ GL Y + + + L ++T L +P Q
Sbjct: 599 --CFQGLSLDQALNISGLPFGNAKYCEAQVLAMTRAMALGTVYTTAQLALPALQEYFLAP 656
Query: 340 ---AALRELESIHKVLDLYVWLSFRLEESFPDRE 370
L+ +E +HK++ Y WL R ++F D E
Sbjct: 657 VAVERLKIMEDLHKMISAYRWLQNRYPQTFVDIE 690
>gi|354593623|ref|ZP_09011666.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
gi|353672734|gb|EHD14430.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
Length = 775
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 211/390 (54%), Gaps = 23/390 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A + + G P +PL++ I ++ D + S
Sbjct: 389 DVALIDEAQMLTDPDRGAAWTAAIMGVPARHVFVLGSPECIPLVKNIARLCDDPWEEISL 448
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R S L + P+ + + +GD ++ FSR + L+ + +G H +++YG+L PE R
Sbjct: 449 QRKSVLQTASSPI-RLNQLHSGDALIAFSRREVLDLRAILMQKG-HRVAVIYGALSPEVR 506
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFND +E +L+A+DAIGMGLNL+I R+IFST+ KFDG R LT EVKQI G
Sbjct: 507 RAEAKRFNDGEAE--ILIATDAIGMGLNLSIKRVIFSTIYKFDGTSRRLLTSQEVKQIGG 564
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES---AGLFPNFDLIYMYSRLHPD 245
RAGRYG K G V L P + LE +P + + P+ D++ + +
Sbjct: 565 RAGRYG-KHETGTVGLLAGAGDPDFIRRQLEAAPEKQKDLRPLVQPDSDIVQLIANEINS 623
Query: 246 SSLYGILEHFLENAKL---SENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 301
SL+G+L L+ A L NY A EE +A+ ++ + L L ++ + + PVD
Sbjct: 624 DSLFGVLTR-LKRAVLRPDDPNYRLAPMEETFAIASALEGVQDLELKNRWTYSVCPVDDR 682
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK-TQAALRELESI---HKVLDLYVW 357
D+ Q L ++A +++ + + P + ++P +QA+ +ELE HK L + W
Sbjct: 683 DN-GIQRLIRWAADHAAG-----KTVAAPSSGKLPNPSQASRQELERAEKRHKRLVAWRW 736
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
LS R + +PD E A + IE L
Sbjct: 737 LSLRFPDIYPDLESAEKTTRELNDWIESVL 766
>gi|46203070|ref|ZP_00052136.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 465
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 209/401 (52%), Gaps = 25/401 (6%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 70 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAKTVIVCGSDDALSSVRRAAEAANE 129
Query: 62 DVKVQSYERLSPLVPLN--VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
++V ++ER SPLV L+ VPL ++ GD +V FSR A++ ++ + +RG H + +
Sbjct: 130 SLEVITFERKSPLVLLDEAVPL---EKVEPGDAVVAFSRRAVHENREILVARG-HRVATI 185
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDL 178
YG+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FS ++K+DGV R L
Sbjct: 186 YGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSAVRKWDGVAERAL 243
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG----LFPNFD 234
T E++QIAGRAGRYG VG V + + + + L +P +A + P+
Sbjct: 244 TNSEIRQIAGRAGRYG-HHEVGYVAATEETAIEPI-RVALAGAPTAPAADTRFYVRPDLT 301
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLF 293
I S +SLY ++ HF + + F + EEVL +A ID+ L + EK+ F
Sbjct: 302 AIRSVSEEMRTNSLYEVMTHFARATFYAGSPFQPSALEEVLDIARTIDRARLPIEEKFAF 361
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLD 353
+ P++ D+I+ L +++ + V G L E K+
Sbjct: 362 SVCPINRRDEIAMGMLERWSQARAAGATVPALRASLAGELDYQ---------ERTVKLAS 412
Query: 354 LYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
Y+WLS R ++F D E + + IE L +K
Sbjct: 413 AYLWLSRRFPDTFDDVEAIRHMRRRANDAIEHHLRETATRK 453
>gi|331250563|ref|XP_003337889.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316879|gb|EFP93470.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 439
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 147/415 (35%), Positives = 205/415 (49%), Gaps = 55/415 (13%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDEIQM+G RG ++T+A+LG+ A ELHLCG+ + V LI+ + D+ +
Sbjct: 8 YDVVVIDEIQMIGDHFRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQDEFILHR 67
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RL+PL + L G S +Q GDC+VTFSR+ IY LKKAI+S + YG LPPE
Sbjct: 68 YQRLTPLKVADSSLKGDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMAYGGLPPE 127
Query: 127 TRTRQATRFN-----DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
R R+A FN + +DVLV SDAIGMGLNL I R+IF ++ KFDG L+
Sbjct: 128 VREREAQMFNLGSQVEGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRNEVALSTS 187
Query: 182 EVKQIAGRAGRYG---SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP----NFD 234
++K I GRAGR+G GE + E+ + + + + ES L P F+
Sbjct: 188 QIKLIGGRAGRFGILPKNVGPGE-SGESREEGSTVGRRVDDERDGYES--LTPIDGAPFE 244
Query: 235 LIYMYSRLHPDSSLYGILEHFLENA-KLSE-NYFFANCEEVLKVATVIDQ-LPLRLHEKY 291
I P +++ G+ L + L+ Y + + +A + LPL L E+
Sbjct: 245 KIERAVLKAPFTTVEGLARRALPGSLTLTRPEYAIGDEKNSGSIADALQHILPLSLSERD 304
Query: 292 LFCISPVDMNDDISSQGLTQFATNYSKKGIVQ----LREIFTPGTLQV------------ 335
LFC +P ++ L Q+A ++ + V LR T+
Sbjct: 305 LFCSAPASARSPVAISALQQWANAHALRRQVDFLAWLRHENVEQTIGSIESSINSSSSSS 364
Query: 336 -----------PKT---------QAALRELESIHKVLDLYVWLSFRLEESFPDRE 370
PK L LESIHK L LY+WL+FRL ESF D E
Sbjct: 365 SSSATTTTTNHPKQNLIKLERLHNENLLRLESIHKCLVLYLWLAFRLPESFVDFE 419
>gi|239606254|gb|EEQ83241.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ER-3]
Length = 730
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 209/414 (50%), Gaps = 59/414 (14%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA D + VIDEIQM+ DP L+ G
Sbjct: 280 MAPFGQDVEVGVIDEIQMIA------------------------DPHRAGLM-------G 308
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 309 DKLEIHHYERLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIV 368
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L LT
Sbjct: 369 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLT 428
Query: 180 VPEVKQIAGRAGRYGS-------------------KFPVGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY S + VG VT L+ DLP + K+L E
Sbjct: 429 VSQVKQIGGRAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTE 488
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L +AGL P ++ +S P + + + L N A++ ++F ++ + + A
Sbjct: 489 PEPIL-AAGLLPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAE 547
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQV 335
ID + L + EK +F +P M D S +F ++ L EI L
Sbjct: 548 AIDSIKGLSMDEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDVLDK 607
Query: 336 PKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
P + + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 608 PVSGDKGYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 661
>gi|261188656|ref|XP_002620742.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
gi|239593100|gb|EEQ75681.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
Length = 730
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 209/414 (50%), Gaps = 59/414 (14%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA D + VIDEIQM+ DP L+ G
Sbjct: 280 MAPFGQDVEVGVIDEIQMIA------------------------DPHRAGLM-------G 308
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL ++ L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 309 DKLEIHHYERLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIV 368
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ + L LT
Sbjct: 369 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLT 428
Query: 180 VPEVKQIAGRAGRYGS-------------------KFPVGEVTCLDSEDLPLLHKSL-LE 219
V +VKQI GRAGRY S + VG VT L+ DLP + K+L E
Sbjct: 429 VSQVKQIGGRAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTE 488
Query: 220 PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVAT 278
P P+L +AGL P ++ +S P + + + L N A++ ++F ++ + + A
Sbjct: 489 PEPIL-AAGLLPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAE 547
Query: 279 VIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQV 335
ID + L + EK +F +P M D S +F ++ L EI L
Sbjct: 548 AIDSIKGLSMDEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDVLDK 607
Query: 336 PKT--QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
P + + L LE++H+ L LY+WLS+R F +R LA K++ + ++ L
Sbjct: 608 PVSGDKGYLATLETLHRSLVLYLWLSYRCGGVFTNRALATHVKSLTEIKMDRAL 661
>gi|224826875|ref|ZP_03699974.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
gi|224600862|gb|EEG07046.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
Length = 658
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 211/407 (51%), Gaps = 28/407 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQ+L RG ++T A+ G+ A+ ++L G A P I+ +++ G ++V+
Sbjct: 254 DVAVIDEIQLLDDPDRGAAWTAAVCGVPASTVYLLGALEAEPAIEALVKRVGGTLEVKKL 313
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK-KAIESRGKHLCSIVYGSLPPET 127
+R SPLV PLGS N+Q GD ++ FSR + + +AIE S +YG+L PE
Sbjct: 314 QRKSPLVMEKKPLGSLKNLQAGDVLIAFSRREVLNWRDQAIEQ--GFAVSAIYGNLSPEV 371
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF D E ++V +DAIGMGLN R+IF+T K+DG ++ KQIA
Sbjct: 372 RQAQAERFID--GETKIVVGTDAIGMGLNTPARRVIFTTASKWDGYSEGEIPAALAKQIA 429
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF--PNFDLIYMYSRLHPD 245
GRAGR+G+ G V LDS ++ L E + L ++G + P+ D + +
Sbjct: 430 GRAGRFGA-HEAGYVAGLDSHTHQIIANLLKETTEPLPASGFYVAPSLDYLQQIAAATGQ 488
Query: 246 SSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 304
S L +LE F ++ + + +F AN + ++ A +D LPL L +++ F + PV +
Sbjct: 489 SKLQALLELFTKHINVHDEFFLPANLADQIEKARWLDALPLTLADRFTFSLCPVSTKIPM 548
Query: 305 SSQGLTQFATNYSKKG----IVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ L +A Y G ++++ + LQ LE K+ Y WL +
Sbjct: 549 LERALQDWA-QYRADGREAPLLRMEGMGGRNELQY---------LEDTCKLYAAYAWLGY 598
Query: 361 RLEESFPDRELA-----ASQKAICSMLIEEFLERLGWQKPRVKKVTP 402
R+ ++FP E+A ++ I ++L + R G + P+ ++ P
Sbjct: 599 RMADTFPHGEMAQTLMQSTSDKIDALLQAQNTRRHGRRAPQDQRRQP 645
>gi|347539189|ref|YP_004846614.1| helicase domain containing protein [Pseudogulbenkiania sp. NH8B]
gi|345642367|dbj|BAK76200.1| helicase domain protein [Pseudogulbenkiania sp. NH8B]
Length = 658
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 211/407 (51%), Gaps = 28/407 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQ+L RG ++T A+ G+ A+ ++L G A P I+ +++ G ++V+
Sbjct: 254 DVAVIDEIQLLDDPDRGAAWTAAVCGVPASTVYLLGALEAEPAIEALVKRVGGTLEVKKL 313
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK-KAIESRGKHLCSIVYGSLPPET 127
+R SPLV PLGS N+Q GD ++ FSR + + +AIE S +YG+L PE
Sbjct: 314 QRKSPLVMEKKPLGSLKNLQAGDVLIAFSRREVLNWRDQAIEQ--GFAVSAIYGNLSPEV 371
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF D E ++V +DAIGMGLN R+IF+T K+DG ++ KQIA
Sbjct: 372 RQAQAERFID--GETKIVVGTDAIGMGLNTPARRVIFTTASKWDGYSEGEIPAALAKQIA 429
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF--PNFDLIYMYSRLHPD 245
GRAGR+G+ G V LDS ++ L E + L ++G + P+ D + +
Sbjct: 430 GRAGRFGA-HEAGYVAGLDSHTHQIIANLLKETTEPLPASGFYVAPSLDYLQQIAAATGQ 488
Query: 246 SSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 304
S L +LE F ++ + + +F AN + ++ A +D LPL L +++ F + PV +
Sbjct: 489 SKLQALLELFTKHINVHDEFFLPANLADQIEKARWLDALPLTLADRFTFSLCPVSTKIPM 548
Query: 305 SSQGLTQFATNYSKKG----IVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ L +A Y G ++++ + LQ LE K+ Y WL +
Sbjct: 549 LERALQDWA-QYRADGREAPLLRMEGMGGRNELQY---------LEDTCKLYAAYAWLGY 598
Query: 361 RLEESFPDRELA-----ASQKAICSMLIEEFLERLGWQKPRVKKVTP 402
R+ ++FP E+A ++ I ++L + R G + P+ ++ P
Sbjct: 599 RMADTFPHGEMAQTLMQSTSDKIDALLQAQNTRRHGRRAPQDQRRQP 645
>gi|71034089|ref|XP_766686.1| ATP-dependent DEAD box helicase [Theileria parva strain Muguga]
gi|68353643|gb|EAN34403.1| ATP-dependent DEAD box helicase, putative [Theileria parva]
Length = 690
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 215/425 (50%), Gaps = 55/425 (12%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
++ AV+DE+QM+G TRG+S+T+A L + ELH+CG + + + + + GD +++
Sbjct: 249 FEVAVLDEMQMVGDLTRGYSWTKAFLSLNVPELHICGSKSCISITANLANIRGDKLEIFE 308
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESR-------GKHLC--SI 118
+ERL L ++ +G S ++ GDC+V FSR+ + L+ IES K C SI
Sbjct: 309 HERLCNLKVMDKAVG-LSELEPGDCVVCFSRYDAFNLRNIIESTKYSWNTLSKEECVTSI 367
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
VYG LPPETR Q RFN + VLVASD IGMG+N++I R+IF + KFDG R L
Sbjct: 368 VYGLLPPETRYDQIERFNKGLTR--VLVASDVIGMGVNVSIRRVIFYRLTKFDGNVSRPL 425
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-Y 237
TV EV QIAGRAGR+G G V+C+ +DLP L + + + +E A + P D I
Sbjct: 426 TVSEVHQIAGRAGRFGIS-SEGFVSCVREQDLPTLREVMAQEVTQIEKAVISPPLDTIGA 484
Query: 238 MYSRLH----PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID--QLPLRLHEKY 291
YS L SL I + ++ + + + ++ V+ ++ LP + ++Y
Sbjct: 485 FYSSLKHFTGEQHSLLNITKLIGSIGRVGQGFMMCDFAQINSVSRCLEGINLPFDILKEY 544
Query: 292 LFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA---------- 341
L V M + S + FA ++S V++ I L T ++
Sbjct: 545 LM----VPMGSTLVSLIVRAFAASHSLLNSVKISNIIQADFLAHNTTNSSNLNDNLDNNL 600
Query: 342 -----------------LRELESIHKVLDLYVWLSFRLE----ESFPDRELAASQKAICS 380
++ LE +++VLD+YVWLS + + P +EL +S S
Sbjct: 601 DNNLDDNLDNNLCKNSEIKRLELLYEVLDIYVWLSNKFPVVYIDKTPVKELKSSLAKTLS 660
Query: 381 MLIEE 385
L+ E
Sbjct: 661 KLVRE 665
>gi|403160469|ref|XP_003320970.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170259|gb|EFP76551.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 545
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 148/259 (57%), Gaps = 22/259 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDEIQM+G RG ++T+A+LG+ A ELHLCG+ + V LI+ + D+ +
Sbjct: 239 YDVVVIDEIQMIGDHFRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQDEFILHR 298
Query: 68 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y+RL+PL + L G S +Q GDC+VTFSR+ IY LKKAI+S + YG LPPE
Sbjct: 299 YQRLTPLKVADSSLKGDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMAYGGLPPE 358
Query: 127 TRTRQATRFN-----DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
R R+A FN + +DVLV SDAIGMGLNL I R+IF ++ KFDG L+
Sbjct: 359 VREREAQMFNLGSQVEGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRNEVALSTS 418
Query: 182 EVKQIAGRAGRYG----------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
++KQI GRAGR+G VGEV ++ D+ LL +S+ P +E
Sbjct: 419 QIKQIGGRAGRFGILPKNAGPGESGESREEGRTVGEVLTMNETDMSLLRRSMAAPFEKIE 478
Query: 226 SAGLFPNFDLIYMYSRLHP 244
A L F + +R P
Sbjct: 479 RAVLKAPFTTVEGLARRAP 497
>gi|296082899|emb|CBI22200.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP+ + ++++I TGD++ Q
Sbjct: 303 YDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQH 362
Query: 68 YERLSPLV-PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
YER PLV LG N+++GDC+V FSR I+ +K AIE H C ++YG+LPPE
Sbjct: 363 YERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPE 422
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
TR +QA+ FND +E+DVLVASDA+GMGLNLNI R++F ++ K++G
Sbjct: 423 TRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRRVVFYSLSKYNG 468
>gi|406694623|gb|EKC97947.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
8904]
Length = 700
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 170/317 (53%), Gaps = 23/317 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQ 66
+D VIDEIQMLG RG ++ A++G+ A E+HLCGD L+ +++ GD + V
Sbjct: 328 WDVVVIDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVH 387
Query: 67 SYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y RL+PL + L S +Q GDC+VTFSR ++ LK IE + ++VYG+LPP
Sbjct: 388 KYNRLTPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPP 447
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
ETR QA FN+ ++ VLVASDA+GMGLNL I+RIIF T+ K++G + L+V KQ
Sbjct: 448 ETRAEQARDFNEGRAQ--VLVASDAVGMGLNLKINRIIFETLWKWNGKQEVPLSVSSAKQ 505
Query: 186 IAGRAGRYGSKFPV----------------GEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229
IAGRAGR+G + G VT L +D LL L P ++ A +
Sbjct: 506 IAGRAGRFGQQRTSAAVDTATTGDAPGDTGGTVTTLHEDDFALLKSLLGRTLPSVKRAVI 565
Query: 230 FPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LR 286
P + + L P +S ++EHF AKL A+ +A +++ L
Sbjct: 566 EPPSEALTALQPLLPAKTSFESLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILT 625
Query: 287 LHEKYLFCISPVDMNDD 303
L E L +P+ D+
Sbjct: 626 LSELQLLANAPLPARDE 642
>gi|358635252|dbj|BAL22549.1| hypothetical protein AZKH_0203 [Azoarcus sp. KH32C]
Length = 685
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 205/408 (50%), Gaps = 18/408 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + AVIDEIQML RG ++T A+ G A + L G +A P I+ + + G
Sbjct: 264 MLNTARPVEVAVIDEIQMLEDLERGSAWTAAVCGAAAKTVFLLGALSARPAIEALAERLG 323
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++V++ ER SPL +GS ++ GD ++ FSR + I G + +I Y
Sbjct: 324 CELEVRTLERKSPLEMAPREVGSIGQLKRGDAVIAFSRRDVLNWATNIAEAGFRVATI-Y 382
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R QA RF D E D++VA+DAIGMGLNL ++R++FST KKFDG+ D+
Sbjct: 383 GNLSPEVRRAQAQRFRD--GEADIVVATDAIGMGLNLPVARVVFSTAKKFDGIS-EDILA 439
Query: 181 PEV-KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF--PNFDLIY 237
P + QIAGRAGR+G G V D ++ + + P+ L + G + P+ +
Sbjct: 440 PWLTHQIAGRAGRFGI-HDAGLVAGFDEHTHRIIGRLMKTPADPLSNRGFYVTPSLHHVK 498
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
S + L +LE F N L++++F + E ++ A +D LPL L ++ +
Sbjct: 499 SISAATGERGLARLLELFSRNIDLTDDFFLPGDLTEQIERARWLDTLPLSLEHRFTLSLV 558
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PV + +Q +A SK+ L P + + + AL+ E K Y
Sbjct: 559 PVSTRVESLNQAWQTWARALSKEKSSHL--AIEP----IGEGRYALQAAEDACKKYSAYA 612
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRP 404
WL +RL + +PD E A S S ++E L R Q R + RP
Sbjct: 613 WLGYRLPDYYPDAEAAVSLARSMSETVDEMLAR---QHGRRRDAKRRP 657
>gi|403337506|gb|EJY67972.1| hypothetical protein OXYTRI_11514 [Oxytricha trifallax]
Length = 901
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 233/497 (46%), Gaps = 105/497 (21%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ ++Y+ AVIDEIQM+ RG+++T ALLG+ A+E+H+ G+ A+ LI +++Q TG
Sbjct: 340 MADLQNEYEVAVIDEIQMIDDPERGYAWTNALLGLKAHEIHIVGEERALSLIDRMVQDTG 399
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIES--RGKHL--- 115
D++ + +YERLS L + + SFS ++GDCI+ FSR ++++K + RG+
Sbjct: 400 DELFINNYERLSTLQVEHKTIRSFSEFKSGDCIIAFSRRELFQIKSQLNKHIRGQQQDKE 459
Query: 116 ----------CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 165
C+I+YG+LPPE++ QA FN+ + LVA+DAIGMGLNL+I RIIFS
Sbjct: 460 QKQNDEEVNHCAIIYGALPPESKKNQAFMFNNRVGDIKYLVATDAIGMGLNLSIKRIIFS 519
Query: 166 TMKKF-------------------------DG--VELRDLTVPEVKQIAGRAGRYGSKFP 198
T+ K DG RD + +++Q+ G+ +
Sbjct: 520 TLSKRVKGRTEQVNEFHIKQIAGRAGRYIEDGYVTAFRDRDLQQIRQVVGKYEKKKGNEV 579
Query: 199 VGEVT-------------------------------------------CLDSEDLP---L 212
E T D +P L
Sbjct: 580 NEETTSQAEESSQRKNRREENLVMDSEEEQELGEEVKTKMYNSIEMEEVFDENTIPIEKL 639
Query: 213 LHKSLLEPSPMLESAGLFPNFDLIY-----MYSRLHPDSSLYGILEHFLENAKLSENYFF 267
++ + + A LFP F +I +Y L +++ F A+L +NYF
Sbjct: 640 KNRQFTKLQQHISRACLFPPFQMIQQFADDLYFSDKKQHRLSEVIQKFEFLARLGQNYFI 699
Query: 268 ANCEEVLKVATVIDQLP-LRLHEKYLFCISP--VDMNDDISSQGLTQ---FATNYSKKGI 321
N E+ ++ ++ +P L ++Y F +SP V +N + L+Q FA ++ G
Sbjct: 700 KNNLEIRILSDSLEDIPNFSLKDQYTFSLSPMKVPLNQRKKVRKLSQLRSFAEQFAAYGR 759
Query: 322 VQLREIFTPGTLQVPKT---QAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAI 378
V L F + + KT + L LE +H +L++Y+WL + E +F + +L
Sbjct: 760 VDLPPDFNISNIILNKTSYDENDLDTLEEMHNILEVYLWLGHKYESAFAEMDLCRIIAEN 819
Query: 379 CSMLIEEFL---ERLGW 392
+I++ L E++ W
Sbjct: 820 VIKIIDQILLGKEKIDW 836
>gi|443924800|gb|ELU43759.1| ATP-dependent RNA helicase suv3 [Rhizoctonia solani AG-1 IA]
Length = 608
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 93/189 (49%), Positives = 131/189 (69%), Gaps = 3/189 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+ VIDEIQML RG ++T A+LG+ A ELHLCG+ V L++++ ++TGD++ V
Sbjct: 345 WSVGVIDEIQMLADPQRGGAWTSAVLGLAAKELHLCGEDTVVDLVRELCRMTGDELIVNR 404
Query: 68 YERLSPL--VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
YERL+PL P ++ G N++ GDC+VTFSR+ I+ K+ IE C++VYG LPP
Sbjct: 405 YERLTPLEVAPYSLE-GKLKNVERGDCVVTFSRNDIFMTKRKIEKETGLRCAVVYGRLPP 463
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R+ QA FND S +DV+VASD++GMGLNL I R++F K++G + L+VP +KQ
Sbjct: 464 EVRSEQAQLFNDEESGYDVIVASDSVGMGLNLKIKRVVFLKTDKWNGKQDVPLSVPLIKQ 523
Query: 186 IAGRAGRYG 194
IAGRAGR+G
Sbjct: 524 IAGRAGRFG 532
>gi|171059674|ref|YP_001792023.1| helicase domain-containing protein [Leptothrix cholodnii SP-6]
gi|170777119|gb|ACB35258.1| helicase domain protein [Leptothrix cholodnii SP-6]
Length = 757
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 198/378 (52%), Gaps = 34/378 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D AVIDE QM+ +RG+++T+A++ + A E+ + AVP I+ +L + G
Sbjct: 358 MVSTNTPIDVAVIDEAQMIFDNSRGWAWTQAIVAVPAREVIIICSAYAVPAIENLLGLCG 417
Query: 61 DDVKVQSYERLS--PLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
+ V+ +ER L+P V S S ++ GD +V FSR + L+ I + G H S+
Sbjct: 418 ERCTVREFERKQHVELLPHAV---SLSGLKLGDAVVAFSRREVLSLRDKIAASG-HPVSV 473
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YG+LPPE R R+A RF A E VLVA+DAIGMGLNL I R++FST+ KFDG R L
Sbjct: 474 IYGALPPEVRRREAERF--AHGESHVLVATDAIGMGLNLPIRRVLFSTLTKFDGQADRSL 531
Query: 179 TVPEVKQIAGRAGRYG-----------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 227
+ EV QIAGRAGRYG P E + D LLH++ P A
Sbjct: 532 SESEVHQIAGRAGRYGMHEEGFTGVLKEAEPSAERSLKD-----LLHRAPRAPRDF--KA 584
Query: 228 GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVID--QLP 284
+ PN + SR + L +L+ F++ KL + +F A E++L +A +D
Sbjct: 585 PVAPNGWHVDTISRRLNKTRLREVLDVFMDQLKLDDAHFAVAELEQMLDLAEKLDISAAG 644
Query: 285 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE 344
L L E++ + +PVD + Q ++++N+++ G TP LQ + L
Sbjct: 645 LTLKERFTYAQAPVDTRTESQVQEYLEWSSNHARTG-----RAGTPWFLQGVDGHSRLDR 699
Query: 345 LESIHKVLDLYVWLSFRL 362
+E + L++WL R
Sbjct: 700 MEQALRACTLWLWLDLRF 717
>gi|219113047|ref|XP_002186107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582957|gb|ACI65577.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 306
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/196 (48%), Positives = 136/196 (69%), Gaps = 7/196 (3%)
Query: 15 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 74
EIQM+ + RGF++TRALLG A E+H+CG A ++++I + GDD ++++Y+R + L
Sbjct: 111 EIQMIEDQERGFAWTRALLGSRAKEIHVCGGLEAKEIVERIAKACGDDFELRTYKRFAEL 170
Query: 75 -VPLNV------PLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
V + + S+ N+Q GDCIV FSR+ I+ +K+ IE+ + C ++YGSLPPET
Sbjct: 171 KVSVQCLAKSLKDVNSYKNVQAGDCIVAFSRNDIFAIKREIETATSYKCCVIYGSLPPET 230
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R+ QA RFN+ +S +D+LVASDAI MGLNL+I RIIF++M K DG + L VKQI+
Sbjct: 231 RSEQARRFNNPNSGYDILVASDAIAMGLNLSIRRIIFNSMYKHDGTGIVRLGHSAVKQIS 290
Query: 188 GRAGRYGSKFPVGEVT 203
GRAGR S +P GEV+
Sbjct: 291 GRAGRRNSLYPFGEVS 306
>gi|56478273|ref|YP_159862.1| hypothetical protein ebA4984 [Aromatoleum aromaticum EbN1]
gi|56314316|emb|CAI08961.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 703
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 212/419 (50%), Gaps = 18/419 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + AVIDEIQML RG ++T A+ G A ++L G +A P ++ + + G
Sbjct: 285 MLDTSRAVEVAVIDEIQMLEDLERGSAWTAAVCGAAAKTVYLLGALSARPAVEALAERLG 344
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++V + R SPL +GS ++ GD ++ FSR + I + G + +I Y
Sbjct: 345 CELEVTTLARKSPLEMAPRAVGSIGQLRRGDAVIAFSRRDVLNWATNIAAAGFRVATI-Y 403
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R QA RF D E D++VA+DAIGMGLNL ++R++FST KKFDG+ D+
Sbjct: 404 GNLSPEVRRAQAQRFRD--GEADIVVATDAIGMGLNLPVARVVFSTAKKFDGIS-EDILA 460
Query: 181 PEV-KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF--PNFDLIY 237
P + QIAGRAGR+G G V D ++ + + P+ L + G + P+ +
Sbjct: 461 PWLTHQIAGRAGRFG-LHEAGLVAGFDDHTHRIISRLMRTPADPLSNRGFYVTPSLRHVK 519
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
+ + +L +LE F N L++++F + E + A +D LPL L ++ +
Sbjct: 520 SIAAATGEHTLARLLELFSRNIDLTDDFFLPGDLSEQTERAQWLDSLPLSLEHRFTLSLV 579
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PV + +Q +A +K+ L P V + AL+ E K Y
Sbjct: 580 PVSTRVETLNQAWQGWARALAKERSSHLS--IEP----VGDMRYALQAAEDACKKYSAYA 633
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRP--KLNSAVVSR 413
WL +RL + +PD E A + S ++E L R ++ R +K TP P ++ + SR
Sbjct: 634 WLGYRLPDYYPDAEAAVALARSMSETVDEMLARQHGRR-RDEKRTPTPARRVRRGLASR 691
>gi|323346239|gb|EGA80529.1| Suv3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 648
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 15/294 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL 283
L+ + P S L + LE K S+N F ++ + LKV + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHM 600
>gi|349581785|dbj|GAA26942.1| K7_Suv3ap, partial [Saccharomyces cerevisiae Kyokai no. 7]
Length = 608
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 15/294 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL 283
L+ + P S L + LE K S+N F ++ + LKV + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHM 600
>gi|380472006|emb|CCF47001.1| ATP-dependent RNA helicase SUV3, partial [Colletotrichum
higginsianum]
Length = 419
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 195/404 (48%), Gaps = 54/404 (13%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AV+DEIQM+ + RG+++++ALLG+ A E+HLCG+ V LI+ I G+ V Y
Sbjct: 31 DVAVLDEIQMISDRDRGWAWSQALLGVMAKEVHLCGEERVVDLIKSICSSIGEKCIVHRY 90
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSPL + L + ++ GD +V F+R ++ L
Sbjct: 91 QRLSPLQTMKKSLKNDLTKLRKGDAVVAFTRVNLHAL----------------------- 127
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
FND +E+D LVASDAIGMGLNL I R+IF T K DG + R LT E+KQI
Sbjct: 128 -------FNDPDNEYDFLVASDAIGMGLNLEIKRVIFETATKHDGTQYRTLTTSEIKQIG 180
Query: 188 GRAGRY-----------GSKFP---VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
GRAGRY G+ P +G VT L +DLP++ K+ + L+ A + P
Sbjct: 181 GRAGRYKTARQAATDPNGTAAPEEKMGYVTTLVDDDLPIIEKAFNSETQPLDVATIHPPA 240
Query: 234 DLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 292
+I +S PD+ L IL E A +S+ Y E L++A I + P+ + E+
Sbjct: 241 SVIEQFSEYFPPDTPLSFILLRLRELAPVSQRYSVYISELSLEIADAIQEFPMTIQERIT 300
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI------FTPGTLQVPKTQAA--LRE 344
+P + + + A S + L +I TL Q L
Sbjct: 301 ILHAPASLREPGMRAIIKAVAKCISTRTGGALYDIQPINLELLDATLDDFSNQGRRYLHS 360
Query: 345 LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+E++H+ + +Y+W+S+R F + LA K IE +LE
Sbjct: 361 IEALHQAITIYLWVSYRFPNIFTSQALAFHVKDAVEEKIEFYLE 404
>gi|116246424|ref|XP_001230325.1| Anopheles gambiae str. PEST AGAP012862-PA [Anopheles gambiae str.
PEST]
gi|116133432|gb|EAU78020.1| AGAP012862-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 202/365 (55%), Gaps = 21/365 (5%)
Query: 33 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 92
+G+ A L++ G P +PLI++I ++ D + + ER SPL + P+ +++ GD
Sbjct: 1 MGVPARHLYILGAPDCIPLIRRIAELCDDPLDEITLERKSPLRAASAPV-RLRDLEAGDA 59
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
++ FSR + L+ + + GK + ++VYG+L PE R +A RFN+ +E +LVA+DAIG
Sbjct: 60 LIAFSRREVLDLRAELLTLGKRV-AVVYGALSPEVRRAEAARFNNGEAE--ILVATDAIG 116
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 212
MGLNL+I R++FS ++K+DG + RDLT E+KQI GRAGRYG G V L P
Sbjct: 117 MGLNLSIKRVVFSALRKYDGKQTRDLTAQEIKQIGGRAGRYGH-HENGIVAVLGEAGTPA 175
Query: 213 LHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE--NYFF 267
+ +L P P+ E L P+ D++ + SLYG+L ++ NY
Sbjct: 176 HIRKMLAAPPEPITELRPLVQPDSDIVRAVAEEIETDSLYGVLVRIKRAVLRADDPNYRL 235
Query: 268 ANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 326
A+ ++ ++A+ ++ + L L +++++ + P+D D+ ++ L +A++++ R
Sbjct: 236 ADMDQAFEIASALEGVEGLSLTQRWVYAMCPIDERDNGIAR-LVGWASDHAAG-----RR 289
Query: 327 IFTPGTLQ-VPKTQAALRELESI---HKVLDLYVWLSFRLEESFPDRELAASQKAICSML 382
+ PGT + V +QA ELE HK L + WLS R +++ D++ A +
Sbjct: 290 VPPPGTGRLVQPSQAGREELERAEKRHKRLVAWRWLSLRFADAYTDKQTAEDNTTALNEW 349
Query: 383 IEEFL 387
IE L
Sbjct: 350 IEAVL 354
>gi|422294926|gb|EKU22226.1| atp-dependent rna helicase [Nannochloropsis gaditana CCMP526]
Length = 1027
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 131/198 (66%), Gaps = 3/198 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + DYD AV+DEIQM+G RG ++TRALLG+ A E+HLCG P AV ++ ++ Q TG
Sbjct: 420 MCSLRQDYDVAVLDEIQMIGDPERGHAWTRALLGLRAKEIHLCGGPEAVEVVSRLCQATG 479
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
DD++++ YER++ L + PL +S + GDCIV FS+ I +K+ IE++ H C +VY
Sbjct: 480 DDLEIRKYERMTELTIASEPLLDYSKVMVGDCIVAFSKSDICSIKQEIEAKTSHKCCMVY 539
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD---GVELRD 177
GSLP ETR+ QA FN+ + FDVLVA+DAIGMGLNLNI RIIF ++ K G E+
Sbjct: 540 GSLPSETRSAQAGIFNEEGTGFDVLVATDAIGMGLNLNIRRIIFHSLIKVSDEGGAEVLH 599
Query: 178 LTVPEVKQIAGRAGRYGS 195
+ + RAG + S
Sbjct: 600 SGLGTATEQIARAGLFPS 617
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 251 ILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGL 309
+++ F A++S+ Y + +A+ + Q+ PL + E+Y+ P+ D + Q L
Sbjct: 705 VMDSFFNMAEVSDTYHMCRSRSMASIASYLAQVKPLSIAERYILSSVPISSRDRFAMQML 764
Query: 310 TQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDR 369
QFA + + + L + P + P T + EL + H VLD Y+WLS + +F R
Sbjct: 765 YQFAAARAARRPMPL-SVRLPAS--PPTTLLGMNELCTKHSVLDAYLWLSHKFPSTFVQR 821
Query: 370 ELAASQKAICSMLIEEFLE 388
E A + + ++E L+
Sbjct: 822 ESALQMRVKLTRMLESGLK 840
>gi|117924245|ref|YP_864862.1| helicase domain-containing protein [Magnetococcus marinus MC-1]
gi|117608001|gb|ABK43456.1| helicase domain protein [Magnetococcus marinus MC-1]
Length = 789
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 205/396 (51%), Gaps = 16/396 (4%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YD AVIDE QM+G RG+++T+A+LG+ A E+ + P+A P+I+++L++T
Sbjct: 342 MLSTHTRYDVAVIDEAQMVGDADRGWAWTQAILGVRAKEVCVIAAPSARPVIEKLLRLTE 401
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V ERL+PL ++ P+ + + ++ G +V FSR + RLK +E C+ +Y
Sbjct: 402 EPWDVVELERLTPLQTMSKPVEALAEMEPGTALVAFSRAQVLRLKAEVEQATGKKCAALY 461
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R QA FN S E LVA+DAIGMGLNL I I+F+ +K LT
Sbjct: 462 GALPPEVRRMQARLFN--SGEAPYLVATDAIGMGLNLPIKTILFAQDRKMINRTEHLLTP 519
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH--KSLLEPSPMLESAGLFPNFDLIYM 238
EV+QIAGRAGR+G EV + + + H ++LL ++ A L PN D +
Sbjct: 520 MEVRQIAGRAGRFGK----NEVGYVGTYRIGTAHIKQALLAVPFDVKKAHLAPNLDHLTA 575
Query: 239 YSRLHPDSSLY--GILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLP-LRLHEKYLFC 294
++L D L + F++ K Y A+ ++ +A + D+ L L +++
Sbjct: 576 IAQLQEDQKLRLTRLFTLFIKTVKPDPALYELADLDDQTTLARIADRHKQLDLPTRFMLS 635
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF-TPGTLQVPKTQAALRELESIHKVLD 353
+PV + + +K + L++ TP P L +LE K+++
Sbjct: 636 AAPVPLRATVVVTAFEHMVAAIAKNSPITLQDALPTPPHKADPNR---LVKLEDAVKIVN 692
Query: 354 LYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
LY WL FR E+ FPD A +A + I L R
Sbjct: 693 LYCWLHFRQEQLFPDLAEAEGLRAHLNTEINTLLGR 728
>gi|389691612|ref|ZP_10180406.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388588595|gb|EIM28885.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 808
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 214/387 (55%), Gaps = 22/387 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDE+QMLG +RG+++T+A++G A + L G P A+PL++ +L +TG+ ++V+
Sbjct: 387 DVCVIDEVQMLGDPSRGWAWTQAMVGAPAKLVVLTGAPEAIPLVEHLLAMTGEPLEVKIL 446
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R L VP + + + GD +V F+R A++ L+ + + G+ + + VYG+L PE R
Sbjct: 447 KRKGKLRVEGVP-ANLNKLTRGDAVVAFTRRAVHDLRTRLVASGRTVAT-VYGALGPEVR 504
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
+A RF + +E +LVA+DAIGMGLN+ + R++FST++KFDGV R L+ E+KQIA
Sbjct: 505 RAEAARFRNGEAE--ILVATDAIGMGLNIGPLRRVVFSTLRKFDGVRERQLSAMEIKQIA 562
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL------EPSPMLESAGLFPNFDLIYMYSR 241
GRAGR+G G VT L +S++ + + + A + PN + + S
Sbjct: 563 GRAGRFGH-HDEGLVTALPEAGAYAQVESVVRNALNGDAAKLRGKAYVRPNQETVLSASE 621
Query: 242 LHPDSSLYGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
+ L +L H + + A+ +E++++A+++D + + + ++ + ++PVD
Sbjct: 622 VLQTDRLGRVLRHLYDTLVAGHPDLRMADMDEMIELASLLDTVDMPILDRLSYAMAPVDG 681
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ ++ + L +A +++ G V+ + L +LE+ K+ ++WL+
Sbjct: 682 REQLAVELLIDWARQHARDGRVRAPDF---------GINTDLLKLEARVKIATSWLWLAQ 732
Query: 361 RLEESFPDRELAASQKAICSMLIEEFL 387
R F D E +A + IEE L
Sbjct: 733 RYPAVFEDMETVVDLRASLNAKIEEKL 759
>gi|427400048|ref|ZP_18891286.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
gi|425720788|gb|EKU83703.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
Length = 671
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 204/392 (52%), Gaps = 11/392 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + + AVIDEIQML + RG ++T A++G AN ++L G P A I+ + +
Sbjct: 261 MLDTKTPVEVAVIDEIQMLADRDRGAAWTTAVVGAPANVVYLVGAPEARRAIEALAERLE 320
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V +R+ PL + SN++ GD ++ FSR + + I +G + + VY
Sbjct: 321 VPLEVHVLKRMGPLSMEPSSVRKLSNLRRGDAVICFSRREVLMWRDMITEKGLSVAT-VY 379
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R QA RF + + D++V +DA+ MGLN+ I+RI+ +T K++G E ++
Sbjct: 380 GNLSPEVRRAQAERFREGQA--DIVVGTDALAMGLNMPIARIVMTTTVKYNGYEEEEIPA 437
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG--LFPNFDLIYM 238
KQIAGRAGRYG G V D + ++ + E P + + G + P+ + ++
Sbjct: 438 ALAKQIAGRAGRYGV-HEEGFVAGYDDDTHQVMRALMKEKIPPVAATGFAVAPSLEQLHR 496
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLPLRLHEKYLFCISP 297
+ + ++SL +L+ F+ N + + +F+ EE + A +D LPL + EK++ + P
Sbjct: 497 IAAVTGETSLVKLLKRFVHNIDVPDGFFYPRITEEQNERAEWLDTLPLSVAEKFMLSLVP 556
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
+ + +A + +KK +V+L+ P L L+E+E +V Y W
Sbjct: 557 ISSRVPVLQSAWEHWALSLAKKKVVKLQPNPNPQHL----FYMNLQEVEDTCRVYSAYAW 612
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLER 389
L +R E FP ELA S ++ L++
Sbjct: 613 LGYREPEYFPSIELAQELAREASERVDAMLQQ 644
>gi|170750803|ref|YP_001757063.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170657325|gb|ACB26380.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 714
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 206/406 (50%), Gaps = 35/406 (8%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +++ + +
Sbjct: 319 ADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVIVCGSDDALSYVRRAAEAADE 378
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
++V + R S + L ++ GD +V FSR A++ ++ + +RG H + +YG
Sbjct: 379 SLEVIPFTRKS-PLLLLEEPVPLEKVEAGDAVVAFSRRAVHENREVLVARG-HRVATIYG 436
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180
+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FS ++K+DG R LT
Sbjct: 437 ALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSAVRKWDGTAERALTH 494
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLD---SEDLPLLHKSLLEPSPMLESAG----LFPNF 233
E++QIAGRAGRYG + VG V D +E + ++ L +P +A + P+
Sbjct: 495 SEIRQIAGRAGRYGHQ-DVGYVAATDPFAAEPI----RTALSGAPTAPAADTRFYVRPDL 549
Query: 234 DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYL 292
I + SL+ +L HF + + F + EEVL+VA +D+ L + EK+
Sbjct: 550 GAIRSVAEEMRTHSLHEVLTHFARATFYAGSPFQPSALEEVLEVARTVDRARLPIEEKFA 609
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQ----AALRELESI 348
F + P+D D+I + GL + G L VP + AL E
Sbjct: 610 FSVCPIDRRDEI-AMGLLERWCQARAAG------------LTVPALRGNLAGALDYQERT 656
Query: 349 HKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
K+ Y+WLS R E+F D + + + IE+ L +K
Sbjct: 657 VKLASAYLWLSRRFPETFDDVDAIRHMRGRANDAIEQHLRETATRK 702
>gi|389700116|ref|ZP_10185167.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
gi|388591261|gb|EIM31519.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
Length = 572
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 24/371 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDE QM+ +RG+++T+A++ + A EL + AV ++ +L + G+ +Q +
Sbjct: 175 DVAVIDEAQMIFDPSRGWAWTQAIVAVPARELFIIASEYAVETLEGLLGLCGESCTIQRF 234
Query: 69 ERLSP--LVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER L+P VPL + + GD +V FSR + L+ I + G H +++YG+LPPE
Sbjct: 235 ERKQAVQLLPAPVPLNA---LHKGDAVVAFSRRDVLMLRDQISAHG-HSVAVIYGALPPE 290
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R R+A RF A VLVA+DAIGMGLNL I R++FSTM KFDG R LT EV QI
Sbjct: 291 VRRREAERF--AQGAVSVLVATDAIGMGLNLPIRRVLFSTMTKFDGQGDRLLTDSEVHQI 348
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE------PSPMLESAGLFPNFDLIYMYS 240
AGRAGR+G T + E P K+L + +P A + PN I S
Sbjct: 349 AGRAGRFG--LHEEGFTGVLKEAEPSAAKTLRQLLPQTPRAPRQFKAPVAPNGWHIDTIS 406
Query: 241 RLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQ--LPLRLHEKYLFCISP 297
+ L+ +L+ F++ +L +F A E++L +A +DQ L L +++ + +P
Sbjct: 407 ARLGKTGLHEVLKVFMDQLQLDSAHFAVAELEQMLTLAEQLDQNAASLNLRQRFTYAQAP 466
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
VD + Q +A ++++ G+V +P L + L +E + L++W
Sbjct: 467 VDTRTEAQVQAFLSWARSHAETGMVA-----SPWFLHEVDEYSRLDRMEQALRACALWLW 521
Query: 358 LSFRLEESFPD 368
L R + D
Sbjct: 522 LDLRFPGVYGD 532
>gi|402225788|gb|EJU05849.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Dacryopinax sp. DJM-731 SS1]
Length = 281
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 1/190 (0%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
++ D V+DEIQ+L RG S+ + LLG A E+H+CG+ AV L+Q+I + GD V+V
Sbjct: 82 TELDVVVLDEIQLLADPDRGSSWMQVLLGANAQEVHVCGEDTAVGLVQRIAEECGDVVEV 141
Query: 66 QSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ YERL+PL L G + IQ GD IV F+R+ I+++ K + + H ++ YG++P
Sbjct: 142 RRYERLTPLKMAKQSLNGDLTKIQPGDAIVAFNRNHIFQIAKQVTEKTGHATALAYGAMP 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PE R +QA FND S +VLVASDAIGMGLNL I R+IF M K++G E+ +L+ + K
Sbjct: 202 PEVRNQQARIFNDPGSSLNVLVASDAIGMGLNLKIKRVIFHRMTKWNGTEVVELSPSQAK 261
Query: 185 QIAGRAGRYG 194
QIAGRAGR+G
Sbjct: 262 QIAGRAGRFG 271
>gi|84997776|ref|XP_953609.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65304606|emb|CAI72931.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 823
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 61/431 (14%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
++ AV+DE+QM+G TRG+S+T+A L + ELH+CG + + + + + GD ++V
Sbjct: 255 FEVAVLDEMQMIGDLTRGYSWTKAFLSLNVPELHICGSKSCISITANLANIRGDKLEVFE 314
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRG------KHLC--SIV 119
+ERL L ++ +G ++ GDC+V FSR + ++ IES K C SIV
Sbjct: 315 HERLGNLKVMDKTIG-LDELEPGDCVVCFSRFDAFTIRNNIESMNYTWNNMKEECVTSIV 373
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPETR Q RFN ++ VL+ASD IGMG+N +I R+IF + KFDG LR LT
Sbjct: 374 YGLLPPETRYEQIERFNKGVTK--VLIASDVIGMGVNASIRRLIFYRLTKFDGNLLRPLT 431
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YM 238
V EV QIAGRAGR+G P G V+C+ +DL L + + + ++ A + P D I
Sbjct: 432 VSEVHQIAGRAGRFGI-IPEGFVSCVREQDLKTLRELMNKEVSQIDKAVISPPLDTIGAF 490
Query: 239 YSRLH----PDSSLYGILEHFL--------------ENAKLSENYFFANCEEVLKVATVI 280
Y+ L SL ++ +L ++ E + + ++ V+ +
Sbjct: 491 YTTLKQFTGEQHSLINTIQLYLVIFMYIVTYECRIGSIGRVGERFQMCDFAQINSVSKCL 550
Query: 281 D--QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKT 338
+ LP + ++YL V M + S + FA ++S V++ I P L
Sbjct: 551 EGINLPFEILKEYLM----VPMGSTLVSLIVRAFAASHSLLNSVKISNIIQPEFLSNNTN 606
Query: 339 --------------------QAALRELESIHKVLDLYVWLSFRLEESFPD----RELAAS 374
++ LE +++VLD+Y WLS + + D +EL +
Sbjct: 607 SNESSDSNDLSDDSLDNLCKNTQIKRLEILYEVLDIYTWLSNKFPLVYVDKIAVKELKSR 666
Query: 375 QKAICSMLIEE 385
S L+ E
Sbjct: 667 VAKTLSKLVRE 677
>gi|34497544|ref|NP_901759.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34331003|gb|AAQ59761.2| probable ATP-dependent RNA helicase [Chromobacterium violaceum ATCC
12472]
Length = 562
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 203/399 (50%), Gaps = 23/399 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQ+L RG ++T A+ G+ A ++L G P + I+ ++ G ++V++
Sbjct: 164 EVAVIDEIQLLDDPDRGAAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTL 223
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER + L PL S N++ GD ++ FSR + + + +G + S +YG+L PE R
Sbjct: 224 ERKTALQMDKAPLLSLKNLKPGDVLIAFSRREVLNWRDKVIEQGLSV-SAIYGNLSPEVR 282
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA RF + E V+VA+DAIGMGLN RIIF+T K+DG + P KQIAG
Sbjct: 283 QAQAERF--VAGETQVVVATDAIGMGLNTPARRIIFTTASKWDGYAEGVIAAPLAKQIAG 340
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKS---LLEPSP-MLESAGLF--PNFDLIYMYSRL 242
RAGR+G K G V D L HK+ LL P L + G F P+ + S+
Sbjct: 341 RAGRFG-KHETGYVAGFDG----LTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQA 395
Query: 243 HPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMN 301
+ L +L F ++ + + +F AN + ++ A +D LPL L ++Y F + P+
Sbjct: 396 TGEIRLKQLLSLFTKHINVHDEFFLPANLSDQMEKAEWLDALPLSLADRYTFSLCPISTK 455
Query: 302 DDISSQGLTQFATNYSK-KGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ L +A ++ K LR + T G + L+ LE K+ Y WL +
Sbjct: 456 IPMLENALHDWAEQRARGKAAPLLRMMGTGGRNE-------LQYLEDSCKLYAAYAWLGY 508
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKK 399
R+ E+FPD E+A S I+ L+ QK + ++
Sbjct: 509 RMPETFPDGEMAQMLMLSTSERIDGLLQVQNAQKRKGRR 547
>gi|288960401|ref|YP_003450741.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
gi|288912709|dbj|BAI74197.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
Length = 758
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 205/390 (52%), Gaps = 9/390 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + VIDEIQM+G RG+++T+A+ G+ A E+ + G A+P ++++ G
Sbjct: 286 MVNTSRIWGACVIDEIQMIGDPDRGWAWTQAVAGVAAPEILMTGSADAIPYVKRLADAMG 345
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V + R SPL + ++TGD ++ FSR + L+ + R H +++Y
Sbjct: 346 EELEVVEFTRKSPLR-VQEERVKLDEVKTGDALIAFSRKDVMALRHDLLGR-NHNVAVIY 403
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + ++ DVLVA+DAIGMGLNL ++R++ ST +K+DG E R+LT
Sbjct: 404 GALSPEVRRAEARRFREGTA--DVLVATDAIGMGLNLPVARVVLSTTRKYDGREERELTA 461
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP--SPMLESAGLFPNFDLIYM 238
E++QI GRAGR+G G V LD E + + ++L P P + + PN +
Sbjct: 462 SEIRQIGGRAGRFG-MHEEGRVAVLDGESINPVRRALTSPPVPPEDPRSWISPNLSHVEA 520
Query: 239 YSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
++ SL +L E + ++ + + E+ ++ A +D+ L L ++ + P
Sbjct: 521 IAQELDTDSLAKVLRTAGQELLRANQTFRMTDLEQRIQAAAAVDRAKLPLAQRDMLARCP 580
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
+D D + + L +A N +GI T L + E K L Y W
Sbjct: 581 IDTRDQNNLRLLGGWAVNQG-RGIPNAAPDAAERFRHSVGTDVELEKAERAVKELTAYAW 639
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L++R +++P+ +L ++A + IE L
Sbjct: 640 LAYRFPDAYPEMDLCQERRAHLNAFIERTL 669
>gi|315636701|ref|ZP_07891931.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
gi|315479016|gb|EFU69719.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
Length = 530
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 217/418 (51%), Gaps = 31/418 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D D D AVIDE+QML RG+++ A++G A ++ + G A+ +++I
Sbjct: 103 MLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCPAKKIIMTGSVNALDAVKKIAAYLD 162
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+D++V + R + L L+ S ++ G ++ FSR + +LK+ ++ K++ S++Y
Sbjct: 163 EDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAFSRSDVLKLKQRLQK--KYVVSVIY 219
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + S+ +L+A+DAI MGLNL I I+F+T KFDGV R +TV
Sbjct: 220 GNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLNLPIKTILFTTDTKFDGVSRRKITV 277
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+ QIAGRAGR+G F G + + L + + P ++ P F + +
Sbjct: 278 NEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEEFESPIKTIK-----PPFKVKINNN 331
Query: 241 RLHP------DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID-QLPLRLHEKYLF 293
+L +SL IL+ F +N + + AN +++ A ++D + L L EKYL
Sbjct: 332 QLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANISSMIEAARIVDNKNGLSLEEKYLL 391
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK---TQAALRELESIHK 350
+P+ I Q + + KK + + P ++ +PK TQ L +E K
Sbjct: 392 AQAPITTKSTIILQAYDSYIASVIKKRVNH----YKP-SITLPKKAITQKDLLLVEDEVK 446
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL-----ERLGWQKPRVKKVTPR 403
+ LY+WLS++L E FPD + A + + IE+ L E G++K KK P+
Sbjct: 447 KISLYLWLSYKLPELFPDHDKAYILRNSFNSFIEKSLKGNLVEESGFEKDFHKKRFPK 504
>gi|291525366|emb|CBK90953.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527047|emb|CBK92633.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 647
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 204/396 (51%), Gaps = 37/396 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D +YD AVIDE QM+ RG S+TRA+LG A E+H+C P A ++ ++ +
Sbjct: 239 MLDCDKEYDIAVIDEAQMVADDDRGHSWTRAILGTLAGEIHICMSPVAKDVVIHLINLCH 298
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+ +++ YER + L + P +++ GD + FS+ ++ + +E G S++Y
Sbjct: 299 DEYEIREYERKTALKLEDKPFSFPQDVREGDAFIVFSKKSVLNIAGRLEENGIK-PSVIY 357
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPE R RQ T FN+ ++ V+V++DAIGMGLNL + RI+F ++KFDGV R L +
Sbjct: 358 GSLPPEIRRRQMTLFNEKKTQ--VVVSTDAIGMGLNLPVRRIVFLEVEKFDGVSRRPLVI 415
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL-FPNFDLIYMY 239
E+KQIAGRAGR+G + G VT L ++L L +L P ++ L FP L+ M
Sbjct: 416 SEIKQIAGRAGRFGL-YDTGYVTALGQKNLNYLKNTLNIPEQDIDIVSLGFPQV-LLTM- 472
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVL---KVATVIDQLPLRLHEKYLF--- 293
D+ L I++ + E AK S + N +E+L A KYL
Sbjct: 473 -----DAPLDAIIKLWHE-AKPSAPFRKINVDEILFLYGYAYKERYFIADFDNKYLLYKM 526
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQA---ALRELESIHK 350
P+D+ D + ++ +Y+ + +L P + L + ES +K
Sbjct: 527 ITCPIDIKDRELVRQWLRYCMSYT-----------SDISLDKPDKHSKYQGLMKYESYYK 575
Query: 351 VLDLYVWLSFRL----EESFPDRELAASQKAICSML 382
LDLY S R+ EE + + E +Q I +L
Sbjct: 576 KLDLYYQFSVRMGKIVEEDWLENERDKTQAKIMQLL 611
>gi|253998438|ref|YP_003050501.1| helicase domain-containing protein [Methylovorus glucosetrophus
SIP3-4]
gi|253985117|gb|ACT49974.1| helicase domain protein [Methylovorus glucosetrophus SIP3-4]
Length = 497
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 202/391 (51%), Gaps = 20/391 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQML + RG+++T AL+G+ A ++ +CG A P+ +L+ + ++
Sbjct: 98 DVAVIDEIQMLQDEARGYAWTAALVGVPAQQVFVCGSDAVTPICLALLESLNEPWQLTRL 157
Query: 69 ERLSPLV-PLNVPLGSFSN-------IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
ER +PL+ + G N +Q GD ++ F+R + L I G + SI Y
Sbjct: 158 ERKTPLILEEHAICGERYNRARLKGKLQKGDAVIAFTRKDVLTLSARIRQWGLSVASI-Y 216
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R ++ RF AS E DVLVA+DAIGMGLNL I R++F+T+ KFDGV R +
Sbjct: 217 GALSPEVRRTESRRF--ASGEADVLVATDAIGMGLNLPIRRVVFTTVHKFDGVASRLIGP 274
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLEPSPMLESAGLFPNF-DLIYM 238
E +QIAGRAGRYG +P G V +++++ L L H S L+ + N+ D+ +
Sbjct: 275 TETRQIAGRAGRYGI-YPTGFVAAVEADELLHLQHMLTTSDSAELQQLPVAANWPDIARL 333
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCIS 296
R+H + + +LE F A S+ + + E + + +IDQ + L +K+ F +
Sbjct: 334 SQRVH-TARIGELLERFSRQALESDLFHLTSAEGQIALGHLIDQQAPHMPLADKFRFSCA 392
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
PV + Q ++ +L E P+ L + E + + LY
Sbjct: 393 PVSFDKRHEMDYFIQCLKAHADHKRRRLPEDVAWLDSSGPQY---LEQAEQFSQDISLYA 449
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFL 387
WL+F+ ++FPD EL + S IE L
Sbjct: 450 WLAFKYPQTFPDGELVPMLRQRVSRYIERAL 480
>gi|374998481|ref|YP_004973980.1| putative helicase [Azospirillum lipoferum 4B]
gi|357425906|emb|CBS88805.1| putative helicase [Azospirillum lipoferum 4B]
Length = 762
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 206/390 (52%), Gaps = 9/390 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + VIDEIQM+G RG+++T+A+ G+ A E+ + G A+P ++++ G
Sbjct: 286 MVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAPEILMTGSADAIPYVKRLADAMG 345
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V + R SPL + ++ GD ++ FSR + L+ + R H +++Y
Sbjct: 346 EELEVIEFTRKSPLR-VQEERVKLEEVKPGDALIAFSRKDVMALRHDLLGR-NHNVAVIY 403
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + ++ DVLVA+DAIGMGLNL ++R++ ST +K+DG E R+LT
Sbjct: 404 GALSPEVRRAEARRFREGTA--DVLVATDAIGMGLNLPVARVVLSTTRKYDGREERELTA 461
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP--SPMLESAGLFPNFDLIYM 238
E++QI GRAGR+G G V LD E++ + ++L P P + + PN +
Sbjct: 462 SEIRQIGGRAGRFG-MHEEGRVAVLDGENINPVRRALTSPPVPPEDPRSWISPNLSHVEA 520
Query: 239 YSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
++ SL +L E + ++ + + E+ ++ A+ +D+ L L ++ + P
Sbjct: 521 IAQELDTDSLAKVLRTAGQELLRANQTFRMTDLEQRIQAASAVDRAKLPLAQRDMLARCP 580
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
+D D + + L +A N +GI T L + E K L Y W
Sbjct: 581 IDTRDQNNLRLLGGWAVNQG-RGIPNAAPDAAERFRHSVGTDVELEKAERAVKELTAYAW 639
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFL 387
L++R +++P+ +L ++A + IE L
Sbjct: 640 LAYRFPDAYPEMDLCQERRAHLNAFIERTL 669
>gi|384156713|ref|YP_005539528.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345470267|dbj|BAK71718.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 530
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 216/418 (51%), Gaps = 31/418 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D D D AVIDE+QML RG+++ A++G A ++ + G A+ +++I
Sbjct: 103 MLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCPAKKIIMTGSVNALDAVKKIAVYLD 162
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+D++V + R + L L+ S ++ G ++ FSR + +LK+ ++ K+ S++Y
Sbjct: 163 EDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAFSRSDVLKLKQRLQK--KYAVSVIY 219
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + S+ +L+A+DAI MGLNL I I+F+T KFDGV R +TV
Sbjct: 220 GNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLNLPIKTILFTTDTKFDGVSRRKITV 277
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+ QIAGRAGR+G F G + + L + + P ++ P F + +
Sbjct: 278 NEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEEFESPIKTIK-----PPFKVKINNN 331
Query: 241 RLHP------DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID-QLPLRLHEKYLF 293
+L +SL IL+ F +N + + AN +++ A ++D + L L EKYL
Sbjct: 332 QLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANISSMIEAARIVDNKNGLSLEEKYLL 391
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK---TQAALRELESIHK 350
+P+ I Q + + KK + + P ++ +PK TQ L +E K
Sbjct: 392 AQAPITTKSTIILQAYDSYIASVIKKRVNH----YKP-SITLPKKAITQKDLLLVEDEVK 446
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL-----ERLGWQKPRVKKVTPR 403
+ LY+WLS++L E FPD + A + + IE+ L E G++K KK P+
Sbjct: 447 KISLYLWLSYKLPELFPDHDKAYILRNSFNSFIEKSLKGNLVEESGFEKDFHKKRFPK 504
>gi|312069312|ref|XP_003137623.1| hypothetical protein LOAG_02037 [Loa loa]
Length = 683
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + + AVIDEIQML ++RG+++TRALLGI A E+HLCG+ AAV +++ +L G
Sbjct: 330 MVPVDVNVEVAVIDEIQMLRDQSRGWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIG 389
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V YER +PL L N++ GDC+V FS ++ + K + G +++Y
Sbjct: 390 EHVEVHRYERKTPLTVNKEALKKLDNVKDGDCLVCFSVSMLFSVAKTLMKLGVQ-PTVIY 448
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI RIIF +F E +
Sbjct: 449 GALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--AN 503
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
V Q+AGRAGR+ S + G VT L D+PLL + EP +E+AG+ P + +
Sbjct: 504 YHVMQVAGRAGRFQSAYQKGWVTTLRPADMPLLEAFMKEPIKPIETAGIAPTSEQV 559
>gi|398022484|ref|XP_003864404.1| RNA helicase, putative [Leishmania donovani]
gi|322502639|emb|CBZ37722.1| RNA helicase, putative [Leishmania donovani]
Length = 687
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 217/459 (47%), Gaps = 96/459 (20%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D V+DEIQM+ + RG+++TRALLG+ A E+HLCG+ A+PLIQ +L T + + +
Sbjct: 222 DVGVVDEIQMMTDRDRGWAWTRALLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTV 281
Query: 69 ERLSPLVPLNVPLGSFS-----NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
E LVPL V S ++ GDC V FS+ + L+ + S +YG++
Sbjct: 282 EH-KRLVPLTVSPSLRSRLRPETVENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAM 340
Query: 124 PPETRTRQATRFNDASSEF----------------------------------------D 143
P + R +A RFN +E+
Sbjct: 341 PFQVREAEAARFNRGVTEYINASASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKH 400
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGE 201
VLV++DAI GLN+NI R++F+T++KFDG + +L V+QIAGR+GR+G + VG
Sbjct: 401 VLVSTDAIAYGLNMNIERMVFTTLRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGR 460
Query: 202 VTCLDSEDLPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLH--------------P 244
T L D+ ++ LEP L AGL P D++ +++ L
Sbjct: 461 CTVLHERDMAAFRAAMSAQLEP---LAKAGLLPTADILQLFAELESAKSRKAGKPTVDLS 517
Query: 245 DSSLYGILEHFLENAKLSENYFFANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMND 302
S + ++ F + S N+F + +L+VA +++ + L L ++ +FC P+
Sbjct: 518 GGSFFELMSTFAASCVESHNFFPCDIHRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTS 577
Query: 303 DISSQGLTQFATNYSKKGIVQLR-EIF-------------------TPGTLQVPKTQAAL 342
S Q + +AT+++ V LR +++ +PG Q + Q ++
Sbjct: 578 AASLQLIVAYATDHAAGKPVPLRFDVWCTELMQRAEREETCGVGASSPGQRQ--QQQLSV 635
Query: 343 R----ELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 377
R ELE + ++Y WLS+R ++F +RE KA
Sbjct: 636 RDLATELERCFRQAEMYCWLSWRFSKTFVERERGLELKA 674
>gi|340506600|gb|EGR32704.1| dpse - suppressor of 3-like 1, putative [Ichthyophthirius
multifiliis]
Length = 412
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 23/310 (7%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D+D A+IDEIQ + + RG ++T LLG+ A E+HLCGD +A+ ++Q I + GDD +
Sbjct: 2 DFDIAIIDEIQQINNEERGSAWTTTLLGLKAKEIHLCGDSSAIDIVQNICKTQGDDFECY 61
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE--SRGK------HLCSI 118
YER+S L +++ GDC + FS + I+ L+K I S K + CSI
Sbjct: 62 QYERMSELKVRKDEYKLNQDLKEGDCFICFSINDIFALQKKINDISNQKFKTCKINYCSI 121
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YG P E + +QA FN ++F L+++DAIGMG+NLNI RI+F+ + K + L
Sbjct: 122 IYGRQPFEIKIQQADLFNSQQNKF--LISTDAIGMGINLNIKRIVFTNIYKLQQNVMNRL 179
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES----AGLFPNFD 234
++QIAGRAGRY GEV + + ++ K+L + S A + P+FD
Sbjct: 180 DFSAIQQIAGRAGRYQEN---GEVCAFYQDQIRIIQKALNDQSNQNRQQKIKAAIEPSFD 236
Query: 235 LIY----MYSRLHPDSS--LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
I + +++P+ S L I + F E + + + YF+++C+++ +I + L L
Sbjct: 237 QILETKSLLEQIYPNRSFNLIDIFQKFAELSCIDDIYFYSSCQDMQFRLNLIQKYNLSLE 296
Query: 289 EKYLFCISPV 298
++Y F P+
Sbjct: 297 DQYRFGKCPI 306
>gi|313200515|ref|YP_004039173.1| helicase domain-containing protein [Methylovorus sp. MP688]
gi|312439831|gb|ADQ83937.1| helicase domain protein [Methylovorus sp. MP688]
Length = 502
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 206/395 (52%), Gaps = 28/395 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D AVIDEIQML + RG+++T AL+G+ A ++ +CG A P+ +L+ + ++
Sbjct: 103 DVAVIDEIQMLQDEARGYAWTAALVGVPAQQVFVCGSDAVTPICLALLESLDEPWQLTRL 162
Query: 69 ERLSPLV-PLNVPLGSFSN-------IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
ER +PL+ + G N +Q GD ++ F+R + L I G + SI Y
Sbjct: 163 ERKTPLILEEHAICGERYNRARLKGKLQKGDAVIAFTRKDVLTLSARIRQWGLSVASI-Y 221
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R ++ RF AS E DVLVA+DAIGMGLNL I R++F+T+ KFDGV R +
Sbjct: 222 GALSPEVRRTESRRF--ASGEADVLVATDAIGMGLNLPIRRVVFTTVHKFDGVASRLIGP 279
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLEPSPMLESAGLFPNF-DLIYM 238
E +QIAGRAGRYG +P G V +++++ L L H S L+ + N+ D+ +
Sbjct: 280 TETRQIAGRAGRYGI-YPTGFVAAVEADELLHLQHMLTTSDSAELQQLPVAANWPDIARL 338
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCIS 296
R+H + + +LE F A S+ + + E + + +IDQ + L +K+ F +
Sbjct: 339 SQRVH-TARIGELLESFSRQALESDLFHLTSAEGQIALGHLIDQQAPHMPLADKFRFSCA 397
Query: 297 PVDMND----DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
PV + D Q L A + ++ + + + G P+ L E + +
Sbjct: 398 PVSFDKRHEMDYFIQCLKAHAAHKRRRLPEDVAWLDSSG----PQY---LEPAEQFSQDI 450
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
LY WL+F+ ++FPD EL + S IE L
Sbjct: 451 SLYAWLAFKYPQTFPDGELVPMLRQRVSRYIERAL 485
>gi|238923919|ref|YP_002937435.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
gi|238875594|gb|ACR75301.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
Length = 647
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 199/402 (49%), Gaps = 49/402 (12%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D +YD AVIDE QM+ RG S+TRA+LG A E+H+C P A ++ ++ +
Sbjct: 239 MLDCDKEYDIAVIDEAQMVADDDRGHSWTRAILGTLAGEIHICMSPVAKDVVIHLINLCH 298
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+ +++ YER + L + P +++ GD + FS+ ++ + +E G S++Y
Sbjct: 299 DEYEIREYERKTALKLEDKPFSFPQDVREGDAFIVFSKKSVLNIAGRLEENGIK-PSVIY 357
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPE R RQ T FN+ ++ V+V++DAIGMGLNL + RI+F ++KFDGV R L +
Sbjct: 358 GSLPPEIRRRQMTLFNEKKTQ--VVVSTDAIGMGLNLPVRRIVFLEVEKFDGVSRRPLVI 415
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL-FPNFDL---- 235
E+KQIAGRAGR+G + G VT L ++L L +L P ++ L FP L
Sbjct: 416 SEIKQIAGRAGRFGL-YDTGYVTALGQKNLSYLKNTLNIPEQDIDIVSLGFPQVLLTMDA 474
Query: 236 -----IYMYSRLHPDSSLYGILEH---FLENAKLSENYFFANCEEVLKVATVIDQLPLRL 287
I ++ P + I FL E YF A+ + L
Sbjct: 475 PLDAIIKLWHEAEPSAPFRKINVDEILFLYGYAYKERYFIADFDNKY------------L 522
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQA---ALRE 344
K + C P+D+ D + ++ +Y+ + +L P + L +
Sbjct: 523 LYKMITC--PIDIKDRELVRQWLRYCMSYT-----------SDISLDKPDKHSKYQGLMK 569
Query: 345 LESIHKVLDLYVWLSFRL----EESFPDRELAASQKAICSML 382
ES +K LDLY S R+ +E + + E +Q I +L
Sbjct: 570 YESYYKKLDLYYQFSVRMGKIVDEDWLENERDKTQAKIMQLL 611
>gi|395762745|ref|ZP_10443414.1| hypothetical protein JPAM2_13466 [Janthinobacterium lividum PAMC
25724]
Length = 662
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 191/371 (51%), Gaps = 13/371 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + + AVIDEIQMLG RG ++T A+ G A+ ++L G P A I+ + +
Sbjct: 267 MLDTKTVVEVAVIDEIQMLGDPDRGAAWTAAVCGAPAHTVYLVGAPEARRAIEALAERLD 326
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V +R++PL + N++ GD ++ FSR + + I G + + VY
Sbjct: 327 CPLEVHVLKRMAPLSMEPTAVRKVRNLRRGDAVIAFSRREVLMWRDMITETGLSVAT-VY 385
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R QA RF D ++ DV+V +DA+ MGLN+ I+RI+ +T K++G E +++
Sbjct: 386 GNLSPEVRRAQAQRFRDGTA--DVVVGTDALAMGLNMPIARIVMTTCVKYNGREEEEISA 443
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG--LFPNFDLIYM 238
+QIAGRAGRYG G V D+E ++ L E L ++G + P+ + ++
Sbjct: 444 ALARQIAGRAGRYGV-HEEGLVAGYDNETHEVMRALLKEKLHPLNTSGFAVAPSLEHLHR 502
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLPLRLHEKYLFCISP 297
S + + SL +L F+ N + + +FF EE + A +D LPL + +K+ + P
Sbjct: 503 ISSVTGELSLSKLLRRFIHNIDVPDGFFFPRITEEQKERAVWLDTLPLSVADKFALSLVP 562
Query: 298 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
+ +A N S+ LR+ G Q L+++E + Y W
Sbjct: 563 ISSKVPSLQTAWEHWAKNLSQGKASTLRQHAYGGGTQ------NLQQVEDTCRYYSAYAW 616
Query: 358 LSFRLEESFPD 368
LS+RL E FPD
Sbjct: 617 LSYRLPEFFPD 627
>gi|401428675|ref|XP_003878820.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495069|emb|CBZ30372.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 687
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 218/456 (47%), Gaps = 90/456 (19%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQ 66
D V+DEIQM+ + RG+++TRALLG+ A E+HLCG+ A+PLIQ +L T + ++
Sbjct: 222 DVGVVDEIQMMADRDRGWAWTRALLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTV 281
Query: 67 SYERLSPLV--PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
++RL PLV P ++ GDC V FS+ + L+ + S +YG++P
Sbjct: 282 EHKRLVPLVVSPSLCSRLRLETVENGDCFVCFSKKQVLDLQDNLNRLPGVTSSAIYGAMP 341
Query: 125 PETRTRQATRFNDASSEF----------------------------------------DV 144
+ R +A RFN +E+ V
Sbjct: 342 FQVREAEAARFNRGVTEYINAFASCSANAKNNAADCSTTSPRGTQPRESSPETATPTKHV 401
Query: 145 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEV 202
LV++DAI GLN+NI R++F+T++KFDG + +L V+QIAGR+GR+G + VG
Sbjct: 402 LVSTDAIAYGLNMNIERVVFTTLRKFDGKGMVELPAATVQQIAGRSGRFGLTRQHTVGRC 461
Query: 203 TCLDSEDLPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLH--------------PD 245
T L D+ ++ LEP L AGL P D++ +++ L D
Sbjct: 462 TVLHECDMTAFSVAMSTQLEP---LAKAGLLPTGDILQLFAELESAKARKAGKPTLGPSD 518
Query: 246 SSLYGILEHFLENAKLSENYFFANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDD 303
S + ++ F + S+N+F + +L++A +++ + L L ++ +FC P+
Sbjct: 519 GSFFELMSRFAASCAGSQNFFPCDIHRSLLRLAELLEPVRDLSLTDRIVFCYLPLSDTSA 578
Query: 304 ISSQGLTQFATNYSKKGIVQLR------EIF-------TPGTLQVP-----KTQAALR-- 343
S Q + +AT+++ V LR E+ T G P + Q ++R
Sbjct: 579 ASLQLIVAYATDHAAGKPVPLRFDAWCAELMQRAEREETCGVGAAPPHQRQQPQLSVRDL 638
Query: 344 --ELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 377
ELE + ++Y WLS+R ++F +RE KA
Sbjct: 639 ATELERCFRQAEMYCWLSWRFGKTFVERERGLELKA 674
>gi|146099298|ref|XP_001468607.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|134072975|emb|CAM71694.1| putative RNA helicase [Leishmania infantum JPCM5]
Length = 687
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 217/459 (47%), Gaps = 96/459 (20%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D V+DEIQM+ + RG+++TRALLG+ A E+HLCG+ A+PLIQ +L T + + +
Sbjct: 222 DVGVVDEIQMMTDRDRGWAWTRALLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTV 281
Query: 69 ERLSPLVPLNVPLGSFS-----NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
E LVPL V S ++ GDC V FS+ + L+ + S +YG++
Sbjct: 282 EH-KRLVPLTVSPSLRSRLRPETVENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAM 340
Query: 124 PPETRTRQATRFNDASSEF----------------------------------------D 143
P + R +A RFN +E+
Sbjct: 341 PFQVREAEAARFNRGVTEYINASASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKH 400
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGE 201
VLV++DAI GLN+NI R++F+T++KFDG + +L V+QIAGR+GR+G + VG
Sbjct: 401 VLVSTDAIAYGLNMNIERMVFTTLRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGR 460
Query: 202 VTCLDSEDLPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLH--------------P 244
T L D+ ++ LEP L AGL P D++ +++ L
Sbjct: 461 CTVLHECDMAAFRAAMSAQLEP---LAKAGLLPTGDILQLFAELESAKSRKAGKPTLDLS 517
Query: 245 DSSLYGILEHFLENAKLSENYFFANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMND 302
S + ++ F + S N+F + +L+VA +++ + L L ++ +FC P+
Sbjct: 518 GGSFFELMSTFAASCVESHNFFPCDIHRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTS 577
Query: 303 DISSQGLTQFATNYSKKGIVQLR-EIF-------------------TPGTLQVPKTQAAL 342
S Q + +AT+++ V LR +++ +PG Q + Q ++
Sbjct: 578 AASLQLIVAYATDHAAGKPVPLRFDVWCTELMQRAEREETCGVGASSPGQRQ--QQQLSV 635
Query: 343 R----ELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 377
R ELE + ++Y WLS+R ++F +RE KA
Sbjct: 636 RDLATELERCFRQAEMYCWLSWRFSKTFVERERGLELKA 674
>gi|444725157|gb|ELW65735.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Tupaia
chinensis]
Length = 619
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 44/296 (14%)
Query: 15 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 74
E+Q LG L G+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+
Sbjct: 230 EVQKLGADY-------GLDGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRTYDRLTPI 282
Query: 75 VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 134
L+ L + N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +
Sbjct: 283 SVLDRALETLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKK 341
Query: 135 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGR 189
FND +LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGR
Sbjct: 342 FNDPDDPCKILVATDAIGMGLNLSIKRIIFYSLMKPSINEKGEREIEPITTSQALQIAGR 401
Query: 190 AGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 249
AGR+ S+F GEVT ++ EDL LL + L P + P
Sbjct: 402 AGRFSSQFKEGEVTTMNREDLGLLKEILNRP---------------------VDP----- 435
Query: 250 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
I + F++ +++ YF N ++ A +I +PL L Y F +DM D S
Sbjct: 436 -IRDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVSYRF----LDMFPDAS 486
>gi|157738406|ref|YP_001491090.1| ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
gi|157700260|gb|ABV68420.1| probable ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
Length = 544
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 215/418 (51%), Gaps = 31/418 (7%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D D D AVIDE+QML RG+++ A++G A ++ + G A+ +++I
Sbjct: 117 MLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCPAKKIIMTGSVNALDAVKKIAAYLD 176
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+D++V + R + L L+ S ++ G ++ FSR + +LK+ ++ K+ S++Y
Sbjct: 177 EDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAFSRSDVLKLKQRLQK--KYAVSVIY 233
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + S+ +L+A+DAI MGLNL I I+F+T KFDGV R +TV
Sbjct: 234 GNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLNLPIKTILFTTDTKFDGVSRRKITV 291
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+ QIAGRAGR+G F G + + L + + ++ P F + +
Sbjct: 292 NEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEEFESSIKTIK-----PPFKVKINNN 345
Query: 241 RLHP------DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID-QLPLRLHEKYLF 293
+L +SL IL+ F +N + + AN +++ A ++D + L L EKYL
Sbjct: 346 QLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANISSMIEAARIVDNKNGLSLEEKYLL 405
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK---TQAALRELESIHK 350
+P+ I Q + + KK + + P ++ +PK TQ L +E K
Sbjct: 406 AQAPITTKSTIILQAYDSYIASVIKKRVNH----YKP-SITLPKKAITQKDLLLVEDEVK 460
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL-----ERLGWQKPRVKKVTPR 403
+ LY+WLS++L E FPD + A + + IE+ L E G++K KK P+
Sbjct: 461 KISLYLWLSYKLPELFPDHDKAYILRNSFNSFIEKSLKGNLVEESGFEKDFHKKRFPK 518
>gi|383757949|ref|YP_005436934.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
gi|381378618|dbj|BAL95435.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
Length = 751
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 24/373 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + AV+DE QM+ RG+++T+A++ + A+EL + AV I+ +L V G
Sbjct: 348 MVSTNNPVEVAVVDEAQMIFDPARGWAWTQAIVAVPASELIIICSEYAVSAIENLLGVCG 407
Query: 61 DDVKVQSYERLS--PLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
+ V+ +ER L+P VPLG +Q+GD +V FSR + L+ AI + G+ + S+
Sbjct: 408 ERCTVRRFERKQHVELLPRPVPLG---GLQSGDAVVAFSRRDVLTLRDAIAANGRPV-SV 463
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
+YG+LPPE R R+A RF AS E ++LVA+DAIGMGLNL I R++FST+ KFDGV R L
Sbjct: 464 IYGALPPEVRRREAERF--ASGESEILVATDAIGMGLNLPIRRVLFSTLSKFDGVGDRLL 521
Query: 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE------PSPMLESAGLFPN 232
EV QIAGRAGR+G + G LD + P ++L E +P A + PN
Sbjct: 522 DESEVHQIAGRAGRFGMQ-EEGFTGVLDLAE-PTAARTLKELLHRQPKAPRQFKAPVAPN 579
Query: 233 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL--PLRLHE 289
+ + + L +L F+E KL + +F A + +L +A +D L L
Sbjct: 580 GWHVRTIAERLQATRLREVLGVFVERLKLDDAHFAVAELDAMLALAEQLDHAAGALPLAA 639
Query: 290 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIH 349
++++ +PVD + + Q +A ++ KG R F L + L +E
Sbjct: 640 RFVYAQAPVDTRSEDTVQEYLDWARGHA-KGARAGRPYF----LDAVDGWSRLDRIEQAL 694
Query: 350 KVLDLYVWLSFRL 362
+ L++WL R
Sbjct: 695 RACTLWLWLDLRF 707
>gi|392377821|ref|YP_004984980.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356879302|emb|CCD00212.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 743
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 211/406 (51%), Gaps = 26/406 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML RG+++T AL+G A +++ G P A PL++++ G+ ++V
Sbjct: 340 EVAVIDEIQMLADPDRGWAWTAALMGAPAETVYILGAPEARPLVERVAAHLGERLEVIEL 399
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER PL ++ L ++ ++ GD ++ FSR I+ ++ + ++G + + VYG+L PE R
Sbjct: 400 ERKVPLTLIDRRL-NWEEVEPGDALIAFSRREIHTVRDTLRAKGLSVAA-VYGALAPEVR 457
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
R+A RF S E DV+VA+DAIGMGLNL R++F+ ++KFDG +R L+ EVKQIAG
Sbjct: 458 RREAARF--LSGEADVVVATDAIGMGLNLPCRRVLFTALEKFDGTSVRPLSATEVKQIAG 515
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRL--HPD 245
RAGR+G KF GE + P ++LLE + L + M +RL H
Sbjct: 516 RAGRFG-KFESGEFGVV-GRGTPQALRTLLEKADGRLRADAPLTVRPTRAMLARLAEHIG 573
Query: 246 SSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 304
+ +L + +A+ + + Y + + ++A ++D+ L L K + P D+ D+
Sbjct: 574 TEETVLLLDCVADARTAGSPYRVGDLSGMRRLALMLDERRLTLPAKLDLLLIPADLEDEA 633
Query: 305 SSQGLTQFATNYSKKGIVQLRE-----IFTPGTLQVPKTQAALRELESIHKVLDLYVWLS 359
++ L G V+ E F P L A LE + + DLY W +
Sbjct: 634 EARILAAIL------GAVEAGEPSPLGRFVPARLDGLDGAA----LEGLSRACDLYYWAA 683
Query: 360 FRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
+ FP+RE +++ S + + L G + ++ P PK
Sbjct: 684 RKFPTLFPEREAVRNRRGEISRRLADLLATRGARSAGQRREPP-PK 728
>gi|288957948|ref|YP_003448289.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
gi|288910256|dbj|BAI71745.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
Length = 733
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 20/394 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML RG+++T AL+G+ A +++ G P PL+++ G+ ++V
Sbjct: 334 EVAVIDEIQMLADPARGWAWTAALMGVPAETVYILGAPEVRPLVERAAAHLGEPLEVVEL 393
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
R +PL L+ L ++ ++ GD ++ FSR ++ ++ + ++G + +I YG+L P R
Sbjct: 394 ARKTPLSMLDRRL-EWAEVERGDALIAFSRREVHSVRDTLLAQGLSVAAI-YGALAPAVR 451
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
R+A RF S E DV+VA+DAIGMGLNL R++F+ ++KFDG +R LT EVKQIAG
Sbjct: 452 RREAARF--LSGEADVVVATDAIGMGLNLPCRRVLFTALEKFDGSAVRPLTATEVKQIAG 509
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRL--HPD 245
RAGR+G +F G + + P K LLE P L + P M +RL H D
Sbjct: 510 RAGRFG-QFEEGHFGVI-ARGAPAALKRLLEAPDRSLRADAPLPVRPTRAMLARLASHID 567
Query: 246 SSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 304
S +L +A + + F A+ + + A ++D L L K ++P D+ +
Sbjct: 568 SDETRLLVECFGSADTAGSPFRLADLSALRRAAPMLDARRLALSAKLELLLAPADLEE-- 625
Query: 305 SSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE--LESIHKVLDLYVWLSFRL 362
++ FA V+ E+ P +P L LE+ + DLY W + +
Sbjct: 626 -AEDAKVFAAILDA---VEAGEVL-PLARLIPARFDGLAADVLEAASRACDLYFWAARKF 680
Query: 363 EESFPDRE-LAASQKAICSMLIEEFLERLGWQKP 395
++ PDRE + ++ AI L E R ++P
Sbjct: 681 PDALPDRERVRGARDAIGQRLSEALASRARRREP 714
>gi|445495736|ref|ZP_21462780.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
gi|444791897|gb|ELX13444.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
Length = 659
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 203/392 (51%), Gaps = 15/392 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + D AVIDEIQML + RG ++T A+ G A+ ++L G P A I+ +
Sbjct: 263 MLDTRTPVDVAVIDEIQMLADRDRGSAWTAAVCGAPAHVVYLVGAPEARRAIEVLAARLE 322
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++V +R PL + SN++ GD ++ FSR + + + G + + VY
Sbjct: 323 CELEVHVLKRKGPLSMEPTAVRKLSNLRRGDAVICFSRREVLMWRDMVTELGLSVAT-VY 381
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R QA RF D ++ DV+V +DAI MGLN+ I+RI+ +T K++G E ++
Sbjct: 382 GNLSPEVRRAQAQRFRDGAA--DVVVGTDAIAMGLNMPIARIVMTTSVKYNGYEEEEIPA 439
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM-LESAG--LFPNFDLIY 237
+QIAGRAGR+G G V D+E ++ +SL+ P+ L++ G + P + ++
Sbjct: 440 ALARQIAGRAGRFGV-HEEGLVAGYDNETHNVM-RSLMAEKPVPLKTTGFAVAPTLEHLH 497
Query: 238 MYSRLHPDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLPLRLHEKYLFCIS 296
S + + +L +L+ F+ N + + +F+ E+ + A +D L L + EK+ +
Sbjct: 498 RISSVTNEHALAKLLKRFVHNIDVPDGFFYPRITEDQFERAAWLDTLALTVAEKFALSLV 557
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYV 356
P+ + +AT+ + K I L+ Q P +L+E+E ++ Y
Sbjct: 558 PISSKVPSLQRAWEHWATSLAAKKITHLK------LEQAPLHYLSLQEVEDACRLYSAYA 611
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
WL++R + FPD LA + S ++ L+
Sbjct: 612 WLAYRQPDYFPDTALAQQLSRLASERVDAMLQ 643
>gi|118388031|ref|XP_001027116.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308886|gb|EAS06874.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 770
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 207/429 (48%), Gaps = 77/429 (17%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D+DCAVIDEIQ LG + RG ++T+A LG+ A E+H+CGD A+ L++ + + GD +
Sbjct: 360 DFDCAVIDEIQYLGDQERGAAWTKAFLGLKAKEIHVCGDGRALQLVENMCKQVGDQFETV 419
Query: 67 SYERLSPLVPLNVPLGSFSNIQTG-------------------DCIVTFSRHAIYRLKKA 107
YER+S L + P ++Q G DC++ FS + K+
Sbjct: 420 KYERMSQLTVEDKPF-ELQDLQEGVYIYLQNLQFMPIQINKMKDCLICFSVNEAISFKRI 478
Query: 108 IES-----------RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 156
+ + ++ CSI+YG P E + QA FN+ + ++ LVA++AIG+GLN
Sbjct: 479 VNNYINSKNPDNPQSQENQCSIIYGRQPAEIKKEQAELFNNRTHKY--LVATNAIGLGLN 536
Query: 157 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 216
LNI R++F+T K + + + E+ QIAGRAGRY G VT +
Sbjct: 537 LNIRRVVFTTFTKNHQSQRKGIDSNEILQIAGRAGRYRED---GLVTARNQ--------- 584
Query: 217 LLEPSPMLESAGLFPNFDLIYMY------SRLHPDSSLYGILEHFLENAKLSENYFFANC 270
++ A FP ++ I + + L + + F+ + L YF N
Sbjct: 585 ------TIQKAAFFPTYEQIEGFRDWLSQGKKKKQIKLSEVFQKFVNYSTLQGAYFIENE 638
Query: 271 EEVLKVATVIDQLPLRLHEKYLFCISPVDMND--DISSQGLTQFATNYSKKGIVQLREIF 328
E A +I+ L L +++ F +P+ + + FA Y+ +EI
Sbjct: 639 REFCHKADLIEDYGLSLSDQFTFSQAPMRFGKVFEKERELFQLFAQKYAMG-----QEIA 693
Query: 329 TPGTLQ-------VPKTQAALRE----LESIHKVLDLYVWLSFRL-EESFPDRELAASQK 376
P L+ + + Q A ++ ES++ +L+LY+WL + E+ FPD +LA ++K
Sbjct: 694 LPNLLKDDDKIKNIKQQQQANKDSLTIYESLYYILELYIWLGNKFGEDRFPDMQLAHNKK 753
Query: 377 A-ICSMLIE 384
+ ICSM+ E
Sbjct: 754 SVICSMMNE 762
>gi|319956822|ref|YP_004168085.1| helicase domain-containing protein [Nitratifractor salsuginis DSM
16511]
gi|319419226|gb|ADV46336.1| helicase domain protein [Nitratifractor salsuginis DSM 16511]
Length = 939
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 15/393 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + +C VIDEIQM+ + RG+++ AL+G A E+ L G A+ +Q++ G
Sbjct: 508 MLNTEVEVECCVIDEIQMIDDRDRGWAWANALIGAPAKEVILTGSENAIEAVQEVCDYLG 567
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V +ER +PL + P+ S I+ IV FSR + LK+ + +R + S+VY
Sbjct: 568 EELEVIRFERKNPLELMKHPV-STKKIEPNTAIVAFSRKEVLSLKQQLSNR--YNVSVVY 624
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + S+ VLVA+DAI MGLNL I I+F+ KFDG+ R+LT
Sbjct: 625 GNLSPEVRREEARRFREGESQ--VLVATDAIAMGLNLPIRTILFAKDNKFDGLRRRELTT 682
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMY 239
E+ QIAGRAGRYG G V LD+ L + P P + + + + + +
Sbjct: 683 SEILQIAGRAGRYGLH-EHGYVGALDAGTLQTIAARFHAPLPPIRLPFSVMASLEHVLLI 741
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
+ L ILE F +N + + AN + +++VA ++D+ L L +Y +PV
Sbjct: 742 GEILETDKLLEILEFFAQNMEFEGPFQAANIDSMMEVAAIVDEYELDLRSRYHLACAPVS 801
Query: 300 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALREL---ESIHKVLDLYV 356
++ ++ + K V + P ++P + EL E K + LY+
Sbjct: 802 ISSPYIESVFHRYLGHLEKGEPVP----YIPPR-ELPDFAVSNEELLNAEDRVKEVSLYL 856
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
WLSF+ E FPD E A + + IE L++
Sbjct: 857 WLSFKFREQFPDTEKAREARERLNHFIENSLQK 889
>gi|424779131|ref|ZP_18206064.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
gi|422886153|gb|EKU28584.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
Length = 465
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 212/414 (51%), Gaps = 34/414 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + AV+DEIQML + RG+++T AL+G+ A L +CGD + + +++++
Sbjct: 37 MMDPTMEVRVAVLDEIQMLQDEQRGWAWTAALVGVPARTLFVCGDASVLRPCERLVRSME 96
Query: 61 DDVKVQSYERLSPL----VPLNVPLGS-------------------FSNIQTGDCIVTFS 97
+ ++++ ER +PL P++ P + + GD +V F+
Sbjct: 97 ETMELEFTERKTPLEVMPYPVDPPRATGKQGRQEAPWRGRKDRQREAQGVSKGDAVVAFT 156
Query: 98 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 157
R + L ++G + +I YG+L PE R ++ RF+ E DVLVA+DAIGMGLNL
Sbjct: 157 RKDVLTLSARYRAQGWKVATI-YGALAPEVRRTESERFSQG--EADVLVATDAIGMGLNL 213
Query: 158 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 217
I R++FST+ KFDG +R L EV+QIAGRAGRYG +P G V +D +DL + L
Sbjct: 214 PIRRVLFSTVHKFDGRSMRALNATEVRQIAGRAGRYG-LYPKGYVGAMDKQDLNHIRTQL 272
Query: 218 LEPSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLK 275
+P ++ + P+ + + + L ++++ +L++F + A S + A ++ ++
Sbjct: 273 QSDAPSVDLRLPIAPSPEHVQALASLLDNNNIGAVLQYFAQKVASDSPLFQTAGLKDAIE 332
Query: 276 VATVIDQLP--LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL 333
+ +D+L L L EK+ F +PV ++ D + + Y + + L P L
Sbjct: 333 LGFCVDRLAPKLDLREKFTFACAPVSVDKDTELDYFKRCLSAYVAQRPMALPP--APSWL 390
Query: 334 QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ + + L + E + K + LY W S + + F +++ S IE L
Sbjct: 391 KS-ASPSRLEDAELLSKQISLYAWFSMKFPQVFDQGPWLPEVRSLVSRFIERSL 443
>gi|332525139|ref|ZP_08401316.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
gi|332108425|gb|EGJ09649.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
Length = 752
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 196/371 (52%), Gaps = 20/371 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + AV+DE QM+ +RG+++T+A++ + A+EL + AVP I+ +L V G
Sbjct: 348 MVSTNNPVEVAVVDEAQMIFDASRGWAWTQAIVAVPASELIIICSEYAVPAIEILLGVCG 407
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+ +ER + L P+ + +Q GD +V FSR + L+ AI + G+ + S++Y
Sbjct: 408 ERCTVRRFERKQHVELLPRPV-ALDALQAGDAVVAFSRRDVLTLRDAIAANGRPV-SVIY 465
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R R+A RF AS E +LVA+DAIGMGLNL I R++FST+ KFDGV R L
Sbjct: 466 GALPPEVRRREAERF--ASGESQILVATDAIGMGLNLPIRRVLFSTLSKFDGVGDRLLDE 523
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE------PSPMLESAGLFPNFD 234
EV QIAGRAGR+G G LD + P ++L E +P A + PN
Sbjct: 524 SEVHQIAGRAGRFGFH-EEGFAGVLDLAE-PTAARTLKELLHRQPKAPRHFKAPVAPNGW 581
Query: 235 LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL--PLRLHEKY 291
+ + + L +L F++ KL + +F A + +L +A +D L L ++
Sbjct: 582 HVRTIAERLQATRLREVLGVFVDRLKLDDAHFAVAELDAMLALAEQLDHAAGALPLAARF 641
Query: 292 LFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKV 351
++ +PVD ++ + Q +A ++K G P L + L +E +
Sbjct: 642 VYAQAPVDSRNEDTVQEYLDWARGHAKGG-----RAGRPSFLDTVDGWSRLDRIEQALRA 696
Query: 352 LDLYVWLSFRL 362
L++WL R
Sbjct: 697 CTLWLWLDLRF 707
>gi|157876001|ref|XP_001686365.1| putative RNA helicase [Leishmania major strain Friedlin]
gi|68129439|emb|CAJ07982.1| putative RNA helicase [Leishmania major strain Friedlin]
Length = 655
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 213/456 (46%), Gaps = 89/456 (19%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D V+DEIQM+ + RG+++TRALLG+ A E+HLCG+ A+PLIQ +L T + + +
Sbjct: 189 DVGVVDEIQMIADRDRGWAWTRALLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTV 248
Query: 69 ERLSPLVPLNVPLGSFS-----NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
E LVPL V S ++ GDC V FS+ + L+ + +YG++
Sbjct: 249 EH-KRLVPLAVSPSLRSRLRPETVENGDCFVCFSKKQVLSLRDNLNRLPGVKSFAIYGAM 307
Query: 124 PPETRTRQATRFNDASSEF----------------------------------------D 143
P + R +A RFN +++
Sbjct: 308 PFQVREAEAARFNRGVTDYINASTSCSANAKNNTAGCSTTSPPGTRPRESSPETATPTKH 367
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGE 201
VLV++DAI GLN+NI R++F+T++KFDG + +L V+QIAGR+GR+G + VG
Sbjct: 368 VLVSTDAIAYGLNMNIERMVFTTLRKFDGKGMVELPAATVQQIAGRSGRFGLTRQHAVGR 427
Query: 202 VTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH--------------PDS 246
T L D+ ++ +P P L AGL P D++ +++ L
Sbjct: 428 CTVLHESDMAAFGAAMSAQPEP-LAKAGLLPTGDILQLFAELESAKSRKASTPTLDLSGG 486
Query: 247 SLYGILEHFLENAKLSENYFFANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDI 304
S + ++ F + S+N+F + +L+VA +++ + L L ++ +FC P+
Sbjct: 487 SFFELMSRFAASCAESQNFFPCDIHRSLLRVAELLEPVRNLSLTDRIMFCYLPLSDMSAA 546
Query: 305 SSQGLTQFATNYSKKGIVQLR-EIFTPGTLQVPKTQAAL--------------------- 342
S Q + +AT+++ V LR +++ +Q + + A
Sbjct: 547 SLQLIVAYATDHAAGKPVPLRFDVWCTELMQRAEREEACCVGAAPPHQREQQQQLSLSDL 606
Query: 343 -RELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 377
ELE + ++Y WLS+R ++F +RE KA
Sbjct: 607 ATELERCFRQAEMYCWLSWRFGKTFVERERGLELKA 642
>gi|296274442|ref|YP_003657073.1| helicase domain-containing protein [Arcobacter nitrofigilis DSM
7299]
gi|296098616|gb|ADG94566.1| helicase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 512
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 208/396 (52%), Gaps = 20/396 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D D D A+IDE+QML RG+++ A++G A ++ + G A+ +++I
Sbjct: 103 MIDFNMDVDVAIIDEVQMLDDDDRGWAWVNAIIGCPAKKIIMTGSVNALEAVKKIAAYLE 162
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+D+ ++ ++R + L L+ + N+++G ++ FSR + +LK+ ++ KH SI+Y
Sbjct: 163 EDLIIEKFKRKNELELLD-KHTALGNLESGTALIAFSRSDVLKLKQKLQK--KHKISIIY 219
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF D E D+L+A+DAI MGLNL I I+F+T KFDG+ R ++V
Sbjct: 220 GNLSPEVRRDEARRFRD--KETDILIATDAIAMGLNLPIKTILFTTHMKFDGISRRGISV 277
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+ QIAGRAGRYG G + + L + + +P ++ P F +
Sbjct: 278 NEIVQIAGRAGRYGH-HEKGFIGATTKDSLKYIKEEYSQPIKTIK-----PPFKVKINNE 331
Query: 241 RLH------PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ-LPLRLHEKYLF 293
+L +SL +L+ F N + AN ++ +T++DQ L+L +KY+
Sbjct: 332 QLTSLAMHLKTTSLTKVLKFFSTNMVFEGPFIAANIGSMISASTIVDQKFNLKLEDKYML 391
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLD 353
+P+ + I Q + + K +++ + T +V +TQ L +E K +
Sbjct: 392 AQAPISVKSKIILQAYDIYISAVLKNRVIRYKPSIT--LPKVARTQKDLLLVEDEIKKIS 449
Query: 354 LYVWLSFRLEESFPDRELAASQKAICSMLIEEFLER 389
LY+WLS++L E FPD A + + +E L++
Sbjct: 450 LYLWLSYKLPEQFPDSIKATIARTSFNQFMENSLKK 485
>gi|313681195|ref|YP_004058933.1| helicase domain-containing protein [Sulfuricurvum kujiense DSM
16994]
gi|313154055|gb|ADR32733.1| helicase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 940
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 203/392 (51%), Gaps = 13/392 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M S+ DC VIDE+QM+ + RG+++ A++G A + + G P A I + + G
Sbjct: 507 MLSFESEVDCCVIDEVQMIDDRDRGWAWANAIIGAPAKTVIMTGSPNAKEAIIALAEYLG 566
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ +++ +ER +PL L P + I+ ++ F+R RLK+ + + S++Y
Sbjct: 567 EPLEIIEFERKNPLELLKSP-TPITAIEPKTAVIAFTRSNALRLKQQLSK--TYRTSVIY 623
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + + D+LVA+DAI MGLNL I ++FS KFDG R+LT
Sbjct: 624 GNLSPEVRREEARRFREGET--DILVATDAISMGLNLPIKTLLFSKADKFDGQNQRNLTA 681
Query: 181 PEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
EV+QI+GRAGRYG K VG +T + + L +E P++ + NFD I +
Sbjct: 682 TEVRQISGRAGRYGLSEKGYVGALTADVLKTISSLFTKAIE--PIVLPFNVMANFDHIML 739
Query: 239 YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
S + + SL I++ F+ N K + AN E + + + ++D+ L + KY +P+
Sbjct: 740 VSNILEEKSLSNIVDFFVRNMKFEGPFRAANLESMQEASAIVDRYDLDMRTKYTLATAPL 799
Query: 299 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK-TQAALRELESIHKVLDLYVW 357
+ + ++ +K + P L + + L+E E K + LY+W
Sbjct: 800 STSSPLVMAAFERYVRALEQKKPIAY---IPPQRLGLHALSMEELQEAEDRIKEISLYLW 856
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLER 389
LS+RL E F D E A + + + IE L++
Sbjct: 857 LSYRLGEFFVDAEKARTFRGELNRFIENSLQQ 888
>gi|239628719|ref|ZP_04671750.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239518865|gb|EEQ58731.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 593
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 184/371 (49%), Gaps = 55/371 (14%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE QM+ RG ++TRA+LG+ A E+HLC P A +I Q+++ GD +V
Sbjct: 183 FDIVVVDECQMVADPYRGHNWTRAVLGLRAEEIHLCMAPEAEDIIVQMIKRCGDQFRVVR 242
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
++R + L P +++ GD ++ FS+ ++ L +E+ G H CS++YGSLPP T
Sbjct: 243 HKRNTRLTLETKPYNLKRDLKKGDALIVFSKKSVLALAAHLENEGTH-CSVIYGSLPPAT 301
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q RF + E DV+V++DAIGMGLNL I RI+F +KFDGV R L E+KQIA
Sbjct: 302 RREQVRRF--LAKETDVVVSTDAIGMGLNLPIRRIVFVETRKFDGVGKRTLNPEEIKQIA 359
Query: 188 GRAGRYGSKFPVGEVTCLDSED----------LPLLHKSLLEPSPMLESAG-------LF 230
GRAGRYG + G VT +D D +P++ + P +L ++
Sbjct: 360 GRAGRYGL-YDEGFVTAIDELDAIKDGLSRLPIPIMKAYVGFPEQLLNLPAEIDTLVKIW 418
Query: 231 PNFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
+ D +Y ++ D SLY EH ++ D
Sbjct: 419 ASMDTPSIYEKMEVDELLSLYMTFEHVHQD----------------------DMDTFTRQ 456
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESI 348
E Y +D+++ + + +Y + + +L ++PG L +LES
Sbjct: 457 EIYKLITCSIDIDNKMVMDLWKDYCRDY--RDVDELEFPYSPGD--------DLYDLESY 506
Query: 349 HKVLDLYVWLS 359
+K+LDLY S
Sbjct: 507 YKMLDLYFQFS 517
>gi|293376698|ref|ZP_06622921.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325845178|ref|ZP_08168486.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292644655|gb|EFF62742.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325488774|gb|EGC91175.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 586
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 160/267 (59%), Gaps = 19/267 (7%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ YD AVIDE+Q++G RG S+T+A+LG+ + ++H+CG L+ Q+++ G++
Sbjct: 219 DLNQLYDVAVIDEVQLIGDVIRGASWTKAILGLMSQDIHICGALNTKKLLIQLIEDCGEE 278
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
+++ Y R +PL P +N GD ++ FS+ + L + + RG + S++YG
Sbjct: 279 YEIKEYYRNTPLKLEQTPY-QMNNPSAGDALIAFSKKKVLELSRYYQDRG-YKVSVIYGD 336
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LPPE R Q + F+ SE +L+ +DAIGMG+NL I RI+F+++KKFDG ++R+LT E
Sbjct: 337 LPPEVRRLQYSMFSSGESE--LLITTDAIGMGVNLPIKRIVFTSLKKFDGEDIRELTSQE 394
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDS-----------EDLPLLHKSLLEPSPMLESAGLFP 231
VKQIAGRAGR G + VG VT +D ED L+ K+++ P+ +L P
Sbjct: 395 VKQIAGRAGRKGI-YEVGYVTSIDEYLGRLQEKLECED-RLIEKAIIGPTELLLQIKGIP 452
Query: 232 NFDLIYMYSRLHPDSSLYGILE--HFL 256
+ + ++S + + S Y ++ H+L
Sbjct: 453 LIEKLAIWSMYYDEFSYYQKMDVSHYL 479
>gi|78778161|ref|YP_394476.1| helicase-like protein [Sulfurimonas denitrificans DSM 1251]
gi|78498701|gb|ABB45241.1| Helicase-like protein [Sulfurimonas denitrificans DSM 1251]
Length = 932
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 189/375 (50%), Gaps = 11/375 (2%)
Query: 17 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76
QML + RG+++ A++G A E+ + G A I + + G+++++ +ER +PL+
Sbjct: 523 QMLDDRDRGWAWANAIIGAPAKEIIMTGSINAKEAIIALAEYLGEELEIIEFERKNPLIL 582
Query: 77 LNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL-CSIVYGSLPPETRTRQATRF 135
L+ P +++ I+ FSR + +LK+ KH S+VYG+L PE R +A RF
Sbjct: 583 LDSPTHE-KDVEANTAIIAFSRKDVLKLKQVF---SKHFSVSVVYGNLSPEVRREEARRF 638
Query: 136 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195
S E VLVA+DAI MG+NL I I+FS +KFDGV R L E+ QI+GRAGRYG
Sbjct: 639 R--SGETQVLVATDAIAMGMNLPIKTILFSKAEKFDGVNDRTLIPSEIHQISGRAGRYGL 696
Query: 196 KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEH 254
G V L + L ++ K+ E + + N D I + + + SL+ IL+
Sbjct: 697 H-EKGYVGALSGDVLNIIKKNFNKEAKSITIPFRVMANLDHIKLVGTILEEKSLHEILKF 755
Query: 255 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 314
F++N + + N +++L+++T++D L L KY +P+ + +
Sbjct: 756 FVKNMEFDGPFVATNLDDMLEISTLVDTYNLDLVTKYHLACAPMTLKSPYIVSAFESYLN 815
Query: 315 NYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAAS 374
K V G +T L E + K + LY+WLS+R + F D A +
Sbjct: 816 TLEKNMPVAYVAPVLSGA--YAQTTDELLRAEDMVKEISLYLWLSYRFSDFFIDANRARA 873
Query: 375 QKAICSMLIEEFLER 389
+ + + IE L++
Sbjct: 874 SRGVLNKFIENTLQQ 888
>gi|374289652|ref|YP_005036737.1| putative helicase [Bacteriovorax marinus SJ]
gi|301168193|emb|CBW27782.1| putative helicase [Bacteriovorax marinus SJ]
Length = 878
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 135/206 (65%), Gaps = 7/206 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA +DC VIDEIQM+ K RG+++TRAL+ I + E+H+CGDP+A L++QI + G
Sbjct: 415 MARFGEVFDCCVIDEIQMITDKQRGWAWTRALVNIFSPEIHVCGDPSAYELVKQIADLCG 474
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D++ V+ Y R++ L P+ ++ D ++ FSR R K+ +E G + SIVY
Sbjct: 475 DELVVKEYTRMTELNVQPKPI-VVGQLEKNDALIVFSRRNALRFKRDLEKVGFKV-SIVY 532
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF-DGVELRDLT 179
G L PE R QA +F++ E D++V++DAI MG+NL + RI+FST+ KF DG E ++
Sbjct: 533 GRLSPEVRREQARKFDEG--ETDIIVSTDAISMGMNLPVRRIVFSTLSKFIDGHEFI-IS 589
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCL 205
E+KQIAGRAGR+G +FP G VT L
Sbjct: 590 QSEIKQIAGRAGRFG-RFPTGFVTTL 614
>gi|393760256|ref|ZP_10349068.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162068|gb|EJC62130.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 1066
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 203/395 (51%), Gaps = 38/395 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + AV+DEIQML + RG+++T AL+G+ A L +CGD + + +++++
Sbjct: 638 MMDPTMEVRVAVLDEIQMLQDEQRGWAWTAALVGVPARTLFVCGDASVLRPCERLVRSME 697
Query: 61 DDVKVQSYERLSPL----VPLNVPLGS-------------------FSNIQTGDCIVTFS 97
+ ++++ ER +PL P+ P + + GD +V F+
Sbjct: 698 ETMELEFTERKTPLEVMPYPVEPPPATGRQGRQPAAWRGRKDRQREAQGVSKGDAVVAFT 757
Query: 98 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 157
R + L ++G + +I YG+L PE R ++ RF+ E DVLVA+DAIGMGLNL
Sbjct: 758 RKDVLTLSARYRAQGWKVATI-YGALAPEVRRTESERFSQG--EADVLVATDAIGMGLNL 814
Query: 158 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 217
I R++FST+ KFDG +R L E++QIAGRAGRYG +P G V +D +DL + L
Sbjct: 815 PIRRVLFSTVHKFDGRSMRVLNATEIRQIAGRAGRYGL-YPKGYVGAMDKQDLNHIRTQL 873
Query: 218 LEPSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLK 275
+P ++ + P+ + + + L ++++ +L++F + A S + A ++ ++
Sbjct: 874 QTEAPSVDLRLPIAPSPEHVQALAALLDNNNIGAVLQYFAQKVASDSPLFQTAGLKDAIE 933
Query: 276 VATVIDQLP--LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTL 333
+ +D+L L L EK+ F +PV ++ D + + Y V R + P
Sbjct: 934 LGFWVDRLAPKLELREKFTFACAPVSVDKDTELDYFKRCLSAY-----VAQRPMALPPAP 988
Query: 334 QVPKTQAA--LRELESIHKVLDLYVWLSFRLEESF 366
K+ + L + E + K + LY W S + + F
Sbjct: 989 SWLKSASPSRLEDAELLSKQISLYAWFSMKFPQVF 1023
>gi|355678524|ref|ZP_09061015.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
gi|354812478|gb|EHE97094.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
Length = 668
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 188/372 (50%), Gaps = 57/372 (15%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE QM+ RG ++TRA+LG+ A+E+HLC P A ++ Q+++ GD +V
Sbjct: 252 FDIVVVDECQMIADPYRGHNWTRAVLGLRADEIHLCMAPEAEDIVVQMIKRCGDQYRVVR 311
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
++R + L + P +++ GD ++ FS+ ++ L +E+ G H CS++YGSLPP T
Sbjct: 312 HKRNTRLTMESKPYNLKRDLKKGDALIVFSKKSVLALAAHLENEGIH-CSVIYGSLPPAT 370
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q RF + E +V+V++DAIGMGLNL I RI+F +KFDGV R LT E+KQIA
Sbjct: 371 RREQVRRF--LAKETEVVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLTPEEIKQIA 428
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP---------------- 231
GRAGR+G + G V+ +D ++ S L P P++++ FP
Sbjct: 429 GRAGRFGL-YDEGFVSAIDEPEVIRDGLSRL-PIPIMKAYVGFPEQLLNLPAEIDTLVKI 486
Query: 232 --NFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRL 287
+ D +Y ++ D +LY EH +N D
Sbjct: 487 WASMDTPSIYEKMEVDELLALYMTFEHVHQN----------------------DIEDFTR 524
Query: 288 HEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELES 347
E Y +D+++ + + +Y + + +L ++PG L +LES
Sbjct: 525 QEIYKLITCSIDIDNKMVMDLWKDYCRDY--REMEELEFPYSPGD--------DLYDLES 574
Query: 348 IHKVLDLYVWLS 359
+K+LDLY S
Sbjct: 575 YYKMLDLYFQFS 586
>gi|302875702|ref|YP_003844335.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|307689134|ref|ZP_07631580.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|302578559|gb|ADL52571.1| helicase domain protein [Clostridium cellulovorans 743B]
Length = 585
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 211/390 (54%), Gaps = 24/390 (6%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ ++YD A+IDEIQM+ RG ++T+ALLG+ A E+H+CG + ++++IL+ +
Sbjct: 218 DIKNEYDVAIIDEIQMINDDQRGAAWTKALLGLKAIEIHICGALNSKEILKEILEDCDEV 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++ Y+R PLV +++++Q GD +V FS+ + +L + K + S++YG
Sbjct: 278 FEIIEYKRNLPLVVEEKSF-NYNDVQVGDALVVFSKKKVLKLAAYYKELDKKV-SVIYGD 335
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LPPE R +Q +F S+E ++L+ +DAIGMG+NL I RIIF ++KFDG +LR LT E
Sbjct: 336 LPPEVRRKQYDQF--ISNEAEILITTDAIGMGVNLPIRRIIFMDVRKFDGNQLRYLTTQE 393
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL 242
VKQIAGRAGR G + +G V E+ L + L +ESA L P+ +++ + +
Sbjct: 394 VKQIAGRAGRLGI-YDIGYVASY-KENQNYLSEYLSVRDDEIESAVLGPSEEILKI--QC 449
Query: 243 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 302
P + I + E + Y + E L V + L +++ P
Sbjct: 450 LPLAEKLAI---WAEKEEELPFYRKMDVSEYLIVLDAVKGYKLSERDQWQLLKIPF---- 502
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLS--F 360
D+S+ + Q +Y + V +I T +L+ + L ELE+ ++ + LY S F
Sbjct: 503 DVSNVEIMQTFISYIDELFVLKNKILTKPSLKFLE----LTELETFYQKISLYYSFSKVF 558
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERL 390
++E D E SQ+A+ S I + L +L
Sbjct: 559 KIE---MDLEWIVSQRAVVSEEINKLLVKL 585
>gi|374292022|ref|YP_005039057.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357423961|emb|CBS86824.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 733
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 204/392 (52%), Gaps = 16/392 (4%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML RG+++T AL+G+ A +++ G P PL+++ G+ ++V
Sbjct: 334 EVAVIDEIQMLADPARGWAWTAALMGVPAETVYILGAPEVRPLVERAAAHLGEALEVVEL 393
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R +PL L+ L ++ ++ GD ++ FSR ++ ++ + ++G + +I YG+L P R
Sbjct: 394 DRKTPLSMLDRRL-DWAEVERGDALIAFSRREVHSVRDTLLAQGLSVAAI-YGALAPAVR 451
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
R+A RF S E DV+VA+DAIGMGLNL R++F+ ++KFDG +R LT EVKQIAG
Sbjct: 452 RREAARF--LSGEADVVVATDAIGMGLNLPCRRVLFTALEKFDGSSVRPLTATEVKQIAG 509
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRL--HPD 245
RAGR+G +F G + + P K LLE P L + P M +RL H D
Sbjct: 510 RAGRFG-QFEEGHFGVI-ARGTPTALKRLLEAPDRRLRADAPLPVRPTRAMLARLASHID 567
Query: 246 SSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 304
S +L A+ + + F A+ + + A ++D L L K ++P D+ +
Sbjct: 568 SDETRLLVECFGTAETAGSPFRLADLSALHRAAPMLDARRLALAAKLELLLAPADLEEPE 627
Query: 305 SSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEE 364
++ ++ L + P L LE+ + DLY W S + +
Sbjct: 628 DAKVFAAILDAVEAGEVLPLARLI-PARLDGLTANV----LEAASRTCDLYFWASRKFPD 682
Query: 365 SFPDRE-LAASQKAICSMLIEEFLERLGWQKP 395
S PDR+ + +++ AI L E R ++P
Sbjct: 683 SLPDRDRVRSARDAIGQRLSEALASRARHREP 714
>gi|384173494|ref|YP_005554871.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345473104|dbj|BAK74554.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 523
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 208/398 (52%), Gaps = 26/398 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D D D AVIDE+QML RG+++ A++G A ++ + G A+ I++I G
Sbjct: 103 MLDFDLDVDVAVIDEVQMLEDPDRGWAWVNAIIGCPAKKIIMTGSVNALDAIKRIATYLG 162
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++++ ++R + L L S ++ G ++ FSR + LK + + K+ S++Y
Sbjct: 163 EELEIIKHQRKNELKVL-PKWTSLEKLEDGTALIAFSRSDV--LKLKQKLQKKYSVSVIY 219
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + ++ +L+A+DAI MGLNL I I+F+T +KFDG R +TV
Sbjct: 220 GNLSPEVRRDEAKRFREKKTQ--ILIATDAIAMGLNLPIKTILFTTDEKFDGKSRRKITV 277
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
E+ QIAGRAGRYG F G + + L + + P ++ P F + +
Sbjct: 278 NEIVQIAGRAGRYGH-FEAGYLGATRRDVLAYIAQEFESPIRTIK-----PPFKVKINNN 331
Query: 241 RLH------PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID-QLPLRLHEKYLF 293
+L +SL +L+ F +N S + AN +L+ A ++D + L+L +KYL
Sbjct: 332 QLESLASHIKTNSLTKVLKFFADNMYFSGPFRAANISSMLEAAKIVDTRFNLKLEDKYLL 391
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK---TQAALRELESIHK 350
+P+ I Q + + KK + + P ++ +PK TQ L +E K
Sbjct: 392 AQAPITTKSTIILQAYESYIASVIKKRVCH----YKP-SITLPKKAITQKDLLLVEDEVK 446
Query: 351 VLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
+ LY+WLS+++ E FPD + A + + IE+ L+
Sbjct: 447 KISLYLWLSYKMPELFPDHDKAYILRNSFNSFIEKSLK 484
>gi|168205910|ref|ZP_02631915.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
gi|170662616|gb|EDT15299.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
Length = 585
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|110799948|ref|YP_696782.1| helicase [Clostridium perfringens ATCC 13124]
gi|168208805|ref|ZP_02634430.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|168212860|ref|ZP_02638485.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|169343663|ref|ZP_02864662.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|182623912|ref|ZP_02951700.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|422875018|ref|ZP_16921503.1| helicase domain-containing protein [Clostridium perfringens F262]
gi|110674595|gb|ABG83582.1| helicase domain protein [Clostridium perfringens ATCC 13124]
gi|169298223|gb|EDS80313.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|170713065|gb|EDT25247.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170715472|gb|EDT27654.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|177910805|gb|EDT73159.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|380304013|gb|EIA16306.1| helicase domain-containing protein [Clostridium perfringens F262]
Length = 585
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|422346769|ref|ZP_16427683.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
gi|373226314|gb|EHP48641.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
Length = 585
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|168215730|ref|ZP_02641355.1| helicase domain protein [Clostridium perfringens NCTC 8239]
gi|182382198|gb|EDT79677.1| helicase domain protein [Clostridium perfringens NCTC 8239]
Length = 585
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|225386707|ref|ZP_03756471.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
gi|225047185|gb|EEG57431.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
Length = 710
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 194/356 (54%), Gaps = 19/356 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AV+DE QM+ RG ++TRA+LG+ A E+HLC P A ++ Q+++ GD K+
Sbjct: 258 FDIAVVDECQMIADPYRGHNWTRAILGLRAEEIHLCMAPEAEDIVVQMIRRCGDQFKIIR 317
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
++R + L P +++ GD ++ FS+ ++ L +E++G H CS++YG+LPP T
Sbjct: 318 HKRNTRLTLQEEPYVLGRDLKKGDALIVFSKKSVLALAAHLENQGVH-CSVIYGNLPPAT 376
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q RF + E +V+V++DAIGMGLNL I RI+F +KFDGV R L E+KQIA
Sbjct: 377 RREQVRRF--LAKETEVVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIA 434
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSS 247
GRAGRYG + G V +D D+ S L P P++++ FP L+ + +++
Sbjct: 435 GRAGRYGL-YDEGFVAAVDDVDVIADGLSRL-PLPIMKAYVGFPE-QLLSLPAQIDTLVK 491
Query: 248 LYGILEHFLENAKLSENYFFANCEEVLKVA-TVIDQLPLRLHEKYLFCISPVDMNDDISS 306
++ ++ K+ + A + + V +++ P E Y +D+++ +
Sbjct: 492 IWAGMDTPSIYVKMEVDELLALYQNFVDVHYDDMEEFP--KPEIYKLITCAIDIDNKLVM 549
Query: 307 QGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRL 362
+ +Y + + +L ++PG L +LES +K+LDLY S ++
Sbjct: 550 DLWRDYCRDYRE--VEELEFPYSPG--------GDLYDLESYYKMLDLYFQFSRKV 595
>gi|5103037|dbj|BAA78770.1| probable ATP-dependent RNA helicase [Clostridium perfringens]
Length = 585
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|18311084|ref|NP_563018.1| helicase domain-containing protein [Clostridium perfringens str.
13]
gi|18145767|dbj|BAB81808.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
13]
Length = 585
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N+Q GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|357054823|ref|ZP_09115903.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
gi|355383869|gb|EHG30942.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
Length = 665
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 182/374 (48%), Gaps = 55/374 (14%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE QM+ RG ++TRA+LG+ A E+HLC P A ++ Q+++ GD +V
Sbjct: 251 FDIVVVDECQMIADPYRGHNWTRAVLGLRAEEIHLCMAPEAEDIVVQMIKRCGDRYRVVR 310
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
++R + L P +++ GD ++ FS+ ++ L +E+ G H CS++YGSLPP T
Sbjct: 311 HKRNTRLTMEKKPYNLKRDLKKGDALIVFSKKSVLALAAHLENEGIH-CSVIYGSLPPAT 369
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q RF + E +V+V++DAIGMGLNL I RI+F +KFDGV R L E+KQIA
Sbjct: 370 RREQVRRF--LARETEVVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIA 427
Query: 188 GRAGRYGSKFPVGEVTCLDSED----------LPLLHKSLLEPSPMLESAG-------LF 230
GRAGRYG + G V +D + +P++ + P +L ++
Sbjct: 428 GRAGRYGL-YDEGFVAAIDEAEVIEDGLSRMPMPIMKAYVGFPEQLLNLPAEIDTLVKIW 486
Query: 231 PNFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
D +Y ++ D +LY EH + D
Sbjct: 487 AGMDTPSIYEKMEVDELLALYMSFEHVHRD----------------------DMGEYSRQ 524
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESI 348
E Y +D+++ + + Y + + +L ++PG L ELES
Sbjct: 525 EIYKLITCSIDIDNKMVMDLWKDYCREY--RDVTELEFPYSPGE--------DLYELESY 574
Query: 349 HKVLDLYVWLSFRL 362
+K+LDLY S ++
Sbjct: 575 YKMLDLYFQFSRKV 588
>gi|110802850|ref|YP_699375.1| helicase domain-containing protein [Clostridium perfringens SM101]
gi|110683351|gb|ABG86721.1| helicase domain protein [Clostridium perfringens SM101]
Length = 585
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A ++++I++ GD
Sbjct: 217 ANIHEKYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGD 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D ++ Y R PL+ V SF N++ GD +V FS+ + ++ + G CSI+
Sbjct: 277 DYEIIEYHRDIPLI---VEDESFHPKNVKEGDALVLFSKKKVLQMAEQYSQMGIK-CSII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF ++ KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELT 390
Query: 180 VPEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 391 SQEVKQIAGRAGRKG 405
>gi|160935116|ref|ZP_02082499.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
gi|158441847|gb|EDP19544.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
Length = 665
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 55/374 (14%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE QM+ RG ++TRA+LG+ A E+HLC P A ++ Q+++ GD +V
Sbjct: 251 FDIVVVDECQMIADPYRGHNWTRAVLGLRAEEIHLCMAPEAEDIVVQMIKRCGDQYRVVR 310
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
++R + L P +++ GD ++ FS+ ++ L +E+ G H CS++YGSLPP T
Sbjct: 311 HKRNTRLTMEKKPYNLKQDLKKGDALIVFSKKSVLALAAHLENEGIH-CSVIYGSLPPAT 369
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q RF + E +V+V++DAIGMGLNL I RI+F +KFDGV R L E+KQIA
Sbjct: 370 RREQVRRF--LARETEVVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIA 427
Query: 188 GRAGRYGSKFPVGEVTCLDS----ED------LPLLHKSLLEPSPMLESAG-------LF 230
GRAGRYG + G V +D ED +P++ + P +L ++
Sbjct: 428 GRAGRYGL-YDEGFVAAIDEPEVIEDGLSRMPMPIMKAYVGFPEQLLNLPAEIDTLVKIW 486
Query: 231 PNFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
D +Y ++ D +LY EH + D
Sbjct: 487 AGMDTPSIYEKMEVDELLALYMSFEHVHRD----------------------DMGEYSRQ 524
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESI 348
E Y +D+++ + + Y + + +L ++PG L +LES
Sbjct: 525 EIYKLITCSIDIDNKMVMDLWKDYCREY--RDVTELEFPYSPGE--------DLYDLESY 574
Query: 349 HKVLDLYVWLSFRL 362
+K+LDLY S ++
Sbjct: 575 YKMLDLYFQFSRKV 588
>gi|302668561|ref|YP_003833009.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302397525|gb|ADL36427.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 699
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 138/213 (64%), Gaps = 8/213 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + ++D A+IDE QM+ + RG S+T A+LG+ A ++H+C P A L+ ++++ G
Sbjct: 288 MMSIRDEWDMAIIDEAQMVADRQRGGSWTAAILGLRAKKIHVCASPDAEKLLTRMIKSCG 347
Query: 61 DDVKVQSYERLSPLVPLNVPLGSF---SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 117
D ++V +ER +PL ++ +F +++ GD ++ FSR ++ + ++ G CS
Sbjct: 348 DIMEVVHHERKTPL-EMDEEASNFRFPEDVKKGDALIVFSRKDVHSVAAELQDSG-LTCS 405
Query: 118 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD 177
I+YGSLP + R R+A +F D E DV+VA+DAIGMG+NL I R++F K+DG++ R
Sbjct: 406 IIYGSLPYDVRHREAGKFADG--ETDVVVATDAIGMGMNLPIRRVVFLETVKYDGIKERP 463
Query: 178 LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 210
LTV E+KQIAGRAGRYG K+ VG VT D+
Sbjct: 464 LTVSEIKQIAGRAGRYG-KYDVGYVTSYYDYDI 495
>gi|452747268|ref|ZP_21947065.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
gi|452008789|gb|EME01025.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
Length = 786
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 198/386 (51%), Gaps = 19/386 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + ++ D ++VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V ++ + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVSKHATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDSGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+
Sbjct: 632 PSLLRAWLTFNRNINYGEAFISVLPDELAEWIELIDDPKIPLWLRWTFACTPI------- 684
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPK--TQAALRELESIHKVLDLYVWLSFRLE 363
G A+ ++++ I ++ E + +PK + L LES V++ Y+ LS L
Sbjct: 685 RGGFDSPASQHAQRWIKRVAEGH---AIPMPKLLLGSDLASLESTLHVVETYLHLSRSLP 741
Query: 364 ESFPDRELAASQKAICSMLIEEFLER 389
E FP+ + + + + I L R
Sbjct: 742 EHFPEHDDGEDARKLLNDAITRELSR 767
>gi|429764545|ref|ZP_19296859.1| helicase protein [Clostridium celatum DSM 1785]
gi|429187827|gb|EKY28729.1| helicase protein [Clostridium celatum DSM 1785]
Length = 453
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 10/228 (4%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+YD AVIDEIQM+ RG +++RA+LG+ NE+H+CG A L+ ++L DD ++
Sbjct: 221 QNYDIAVIDEIQMINDNQRGIAWSRAVLGLRCNEIHICGAMNAKELLIKMLDDCEDDYEI 280
Query: 66 QSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ Y R +PL V +FS ++Q GD IV FS+ + + ++ S SI+YG L
Sbjct: 281 KEYHRN---IPLEVETKNFSYNDVQEGDAIVVFSKKRVLEIAQSY-SNNNVKTSIIYGDL 336
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
PPE R Q +F + E VLV +DAIGMG+NL I RIIF +++KFDG E+R+LT E+
Sbjct: 337 PPEVRKMQYEQF--INKENKVLVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEI 394
Query: 184 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 231
KQ+AGRAGR G + +G V + S+ ++ + L E +++ A + P
Sbjct: 395 KQVAGRAGRKGI-YDIGYVAGV-SDTHNIISRKLEEKDEVIKQAVIGP 440
>gi|404370561|ref|ZP_10975883.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
gi|226913306|gb|EEH98507.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
Length = 585
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 142/232 (61%), Gaps = 10/232 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ +YD A+IDEIQM+ RG ++TRALLG+ NE+H+CG A ++++I++ D
Sbjct: 217 ADLKKEYDIAIIDEIQMIDDSQRGAAWTRALLGLRCNEIHICGALNAKRVVEKIIEDCND 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + Y+R +PL V +F + + GD IV FS+ + ++ + G SI+
Sbjct: 277 DYEFKEYKR---SIPLEVQESNFNYNYAEEGDAIVVFSKKKVLQIAEQYSDMGIK-ASII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R +Q F + E VL+ +DAIGMG+NL I RI+F ++KFDG E+R LT
Sbjct: 333 YGDLPPEVRRKQYDMF--INKENKVLITTDAIGMGVNLPIKRIVFLDIQKFDGEEIRYLT 390
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 231
EVKQ+AGRAGR G + VG V + ++ + + L E ++++A L P
Sbjct: 391 SQEVKQVAGRAGRKGI-YEVGYVATV-RDNQKFIKEKLEEKDKIIKAAVLGP 440
>gi|70936926|ref|XP_739340.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56516265|emb|CAH84314.1| hypothetical protein PC300972.00.0 [Plasmodium chabaudi chabaudi]
Length = 389
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 24/244 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDCA+IDEIQM+ RG+++T L+ + E++LCG V LI+++ +
Sbjct: 146 MTPLNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILH 205
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V ++ ++RL+ L L + +++TGDCI++FSR+ I LK +E K + ++Y
Sbjct: 206 DQVIIKRFKRLNKL-KLEKNIQPLDDVKTGDCIISFSRNNIMLLKNKLEKLNKRV-FVIY 263
Query: 121 GSLPPETRTRQATRFN-------DASSEFD----------VLVASDAIGMGLNLNISRII 163
G+LPPE++ +Q FN ++S VLVA+D IGMGLN+ I RII
Sbjct: 264 GTLPPESKKKQIELFNYYCELAKSSNSNIKNETHGIEKETVLVATDVIGMGLNIKIKRII 323
Query: 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPVGEVTCLDSEDLPLLHKSLLE 219
F ++KK+DG +R L V E+ QIAGRAGR+ G VTC++ ED+ +L K+L E
Sbjct: 324 FYSLKKYDGDIIRYLNVSEILQIAGRAGRFDENCSGNSSDGFVTCVNYEDMKIL-KNLFE 382
Query: 220 PSPM 223
+
Sbjct: 383 NKNI 386
>gi|154336527|ref|XP_001564499.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061534|emb|CAM38564.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 686
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 206/446 (46%), Gaps = 83/446 (18%)
Query: 15 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLS 72
EIQM+ + RG+++TRALLG+ A E+HLCG+ A+PLIQ++L T + + + ++RL
Sbjct: 228 EIQMMADRDRGWAWTRALLGLPAREIHLCGEARALPLIQKLLYATHERKSLLLVEHKRLV 287
Query: 73 PLV--PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
PL P ++ GDC V FS+ + L+ + S +YG +P + R
Sbjct: 288 PLAVFPSLCSRLQPETVENGDCFVCFSKKEVLDLRDKLNRLPGVTSSAIYGVMPFQVREA 347
Query: 131 QATRFNDASSEF----------------------------------------DVLVASDA 150
+A RFN +E+ VLV++DA
Sbjct: 348 EAARFNHGVAEYISASSTCVANARDNAASPTTTSPRSSQSRVSSPEAAMPTKHVLVSTDA 407
Query: 151 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSE 208
I GLN+NI RI+F+T++KFDG + +L V+QIAGR+GR+G + VG T L
Sbjct: 408 IAFGLNMNIERIVFTTLRKFDGNGMIELPDATVQQIAGRSGRFGLTRQHAVGRCTVLHER 467
Query: 209 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-----------DS---SLYGILEH 254
D+ ++ L AGL P D++ ++ L DS S + ++
Sbjct: 468 DMTKFSAAMSAQLAPLGKAGLLPTGDVLQLFVELDAAKARKASKATLDSNGGSFFELMSR 527
Query: 255 FLENAKLSENYFFANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQF 312
F + SE++F + +L++A +++ + L L ++ LFC P+ S Q + +
Sbjct: 528 FAASCTASEHFFPCDIHRSLLRLAELLEPVRDLSLADRILFCYLPLSDTSAASLQLIVAY 587
Query: 313 ATNYSKKGIVQLR-------------------EIFTPG--TLQVPKTQAALRELESIHKV 351
AT+++ V LR E TP LQ + ELE +
Sbjct: 588 ATDHAAGKPVTLRFDVWCAELMKQVERGDPCEEGETPQHRRLQQRSARELATELERCFRR 647
Query: 352 LDLYVWLSFRLEESFPDRELAASQKA 377
++Y WLS+R ++F +RE KA
Sbjct: 648 AEMYCWLSWRFGKTFVERERGLELKA 673
>gi|156101109|ref|XP_001616248.1| ATP-dependent DEAD box helicase [Plasmodium vivax Sal-1]
gi|148805122|gb|EDL46521.1| ATP-dependent DEAD box helicase, putative [Plasmodium vivax]
Length = 862
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 28/243 (11%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDCAVIDEIQM+ +TRG ++T LL + E++LCG + L++++ +
Sbjct: 240 MTPLERQYDCAVIDEIQMINHETRGCAWTNVLLNLECEEIYLCGSDQIINLVKRLADLLH 299
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + ++ +ERL+ L + + ++TGDC++TFSR++I LKK +E K + +VY
Sbjct: 300 DQLIIKQFERLTKLRVQESTV-EWEELKTGDCVITFSRNSIMLLKKRLERFNKRVF-VVY 357
Query: 121 GSLPPETRTRQATRFN---------DASSEFD--------------VLVASDAIGMGLNL 157
GSLPPE + RQ FN + E D +L+A+D IGMG+N+
Sbjct: 358 GSLPPELKRRQVELFNRCCTGEGGIEKVDETDTAELPPSSDNKKETILIATDVIGMGVNI 417
Query: 158 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPV-GEVTCLDSEDLPLLH 214
NI RIIF +++KFDG +LR L EV QIAGRAGRY G + P+ G VTC+ + DL +
Sbjct: 418 NIRRIIFYSLQKFDGDKLRHLYASEVLQIAGRAGRYHHGVREPITGYVTCVHAHDLGTIR 477
Query: 215 KSL 217
+ L
Sbjct: 478 RIL 480
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 227 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 279
AG FP+F++I ++ L+ I+ ++ AKL+E+YFF N +++ +A
Sbjct: 563 AGFFPDFNMINKLKKMLEYEHKAKVELHEIMSILVDYAKLNEDYFFLTKNYNQMIIIAKF 622
Query: 280 IDQLPLRLHEKYLFCISPVDMND 302
+ + L +++ +SP+++ND
Sbjct: 623 LKDIKLDGETLFVYSLSPINVND 645
>gi|392420786|ref|YP_006457390.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390982974|gb|AFM32967.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 785
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 198/386 (51%), Gaps = 19/386 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + ++ D ++VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V ++ + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVSKRSTTLERLEPGSLLVAFSRKLVLELKGMLESVGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDSGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+
Sbjct: 632 PSLLRAWLTFNRNINYGEAFISVLPDELAEWIELIDDPKIPLWLRWTFACTPI------- 684
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPK--TQAALRELESIHKVLDLYVWLSFRLE 363
G A+ ++++ I ++ E + +PK + L LES V++ Y+ LS L
Sbjct: 685 RGGFDSPASQHAQRWIKRVAEGH---AIPMPKLLLGSDLASLESTLHVVETYLHLSRSLP 741
Query: 364 ESFPDRELAASQKAICSMLIEEFLER 389
E FP+ + + + + I L R
Sbjct: 742 EHFPEHDDGEDARKLLNDAITRELSR 767
>gi|300855087|ref|YP_003780071.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300435202|gb|ADK14969.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 585
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 130/204 (63%), Gaps = 6/204 (2%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ K RG +++RALLG+ +E+H+CG A +I+ I+ D+ +++
Sbjct: 223 YDIAVIDEIQMISDKQRGMAWSRALLGLKCDEIHICGALNAKDIIKTIINDCEDEYEIKE 282
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y+R PL N ++ +I+ GD +V FS+ + + + S+G S++YG LPPE
Sbjct: 283 YKRSIPLEVENKKF-NYDDIKEGDAVVVFSKKRVLEIAQRYSSKGIK-ASMIYGDLPPEV 340
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q +F + E VLV +DAIGMG+NL I RIIF +KKFDG E+R+LT EVKQ++
Sbjct: 341 RKMQYEQF--TNKETKVLVTTDAIGMGVNLPIRRIIFINIKKFDGEEVRELTSQEVKQVS 398
Query: 188 GRAGRYGSKFPVGEVTCL-DSEDL 210
GRAGR G + +G V D++D
Sbjct: 399 GRAGRIGI-YDIGYVASAGDTQDF 421
>gi|339493591|ref|YP_004713884.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800963|gb|AEJ04795.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 786
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 195/384 (50%), Gaps = 15/384 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + ++ D ++VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVAKHATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDSGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+ D
Sbjct: 632 PSLLRSWLTFNRNINYGEAFVSVLPDELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSP 691
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
+ +Q A + K+ + + I P L A L LES V++ Y+ L+ L E
Sbjct: 692 A---SQHAQRWIKR-VAEGHAIPMPRLL----LGADLASLESTLHVVETYLHLARSLPEH 743
Query: 366 FPDRELAASQKAICSMLIEEFLER 389
FP+ + + + + I L R
Sbjct: 744 FPEHDDGEEARKLLNDAITRELSR 767
>gi|451819288|ref|YP_007455489.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785267|gb|AGF56235.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 585
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 129/200 (64%), Gaps = 9/200 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ AVIDEIQM+ RG ++++A+LG+ +E+H+CG A +++ I++ DD +++
Sbjct: 223 YEIAVIDEIQMISDPFRGMAWSKAVLGLQCDEIHICGAANAKYILETIIKDCKDDFEIKE 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y R +PL V +FS +IQ GD IV FS+ + + + SRG S++YG LPP
Sbjct: 283 YTRA---IPLEVEFKNFSYNDIQEGDAIVVFSKKRVLEIAEEYSSRGIK-ASVIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q T+F + E +LV +DAIGMG+NL I RIIF +++KFDG E+R+LT E+KQ
Sbjct: 339 EVRKMQYTQF--VNKETKILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQ 396
Query: 186 IAGRAGRYGSKFPVGEVTCL 205
+ GRAGR G + VG + +
Sbjct: 397 VGGRAGRIGI-YDVGYIASV 415
>gi|410994891|gb|AFV96356.1| hypothetical protein B649_00210 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 942
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 201/388 (51%), Gaps = 17/388 (4%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
+ DC VIDE+QM+ + RG+++ A++G A + + G P A + + + G+ +++
Sbjct: 513 EVDCCVIDEVQMIDDRDRGWAWANAIIGAPAKTVIMTGSPNAREAVIALAEYLGEPLEIV 572
Query: 67 SYERLSPLVPLN--VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ER +PL L P+ + I+ ++ F+R RLK+ + + S++YG+L
Sbjct: 573 EFERKNPLELLKSATPIDA---IEPKTAVIAFTRSNALRLKQQLSK--TYRTSVIYGNLS 627
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PE R +A RF + + D+LVA+DAI MGLNL I ++FS KFDG R+LT EV+
Sbjct: 628 PEVRREEARRFREGET--DILVATDAISMGLNLPIKTLLFSKADKFDGQNQRNLTSTEVR 685
Query: 185 QIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL 242
QI+GRAGRYG K VG +T + + L +EP + + NFD I + S +
Sbjct: 686 QISGRAGRYGLSEKGYVGALTNDVLKTVSTLFTKNIEPITL--PFNVMANFDHIMLVSNI 743
Query: 243 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 302
+ SL I++ F++N K + AN E + + + ++D+ L + KY +P+ +
Sbjct: 744 LEERSLSNIVDFFVQNMKFEGPFRAANLESMQEASAIVDRYDLDMRTKYTLATAPLSTSS 803
Query: 303 DISSQGLTQFATNYSKKGIVQLREIFTPGTL-QVPKTQAALRELESIHKVLDLYVWLSFR 361
+ ++ +K + P L + L+E E K + LY+WLS+R
Sbjct: 804 PLVMAAFERYVRALEQKKPIAY---IPPQRLGNHALSMEELQEAEDRIKEISLYLWLSYR 860
Query: 362 LEESFPDRELAASQKAICSMLIEEFLER 389
+ E F D E A + + + IE L++
Sbjct: 861 MGEFFVDAEKARTFRGELNRFIENSLQQ 888
>gi|386020255|ref|YP_005938279.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327480227|gb|AEA83537.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 786
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 195/384 (50%), Gaps = 15/384 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + ++ D ++VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVAKHATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDRGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+ D
Sbjct: 632 PSLLRSWLTFNRNINYGEAFVSVLPDELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSP 691
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
+ +Q A + K+ + + I P L A L LES V++ Y+ L+ L E
Sbjct: 692 A---SQHAQRWIKR-VAEGHAIPMPRLL----LGADLASLESTLHVVETYLHLARSLPEH 743
Query: 366 FPDRELAASQKAICSMLIEEFLER 389
FP+ + + + + I L R
Sbjct: 744 FPEHDDGEEARKLLNDAITRELSR 767
>gi|254457657|ref|ZP_05071085.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|373867546|ref|ZP_09603944.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
gi|207086449|gb|EDZ63733.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|372469647|gb|EHP29851.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
Length = 930
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 200/376 (53%), Gaps = 13/376 (3%)
Query: 17 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76
QML + RG+++ A++G A E+ + G + + + G+++++ +ER +PL
Sbjct: 523 QMLDDRDRGWAWANAIIGAPAKEIIMTGSSNVKAAVIALAEYLGEELEIIEFERKNPLTL 582
Query: 77 LNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 136
L P+ S +++ I+ FSR + RLK+ SR S+VYG+L PE R +A RF
Sbjct: 583 LEFPISS-KDVEESTAIIAFSRKDVLRLKQDF-SRF-FSVSVVYGNLSPEVRREEARRFR 639
Query: 137 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
+ ++ +L+A+DAI MG+NL I I+FS +KFDG+ R+L E+ QI+GRAGRYG K
Sbjct: 640 EGDTQ--ILIATDAIAMGMNLPIKTILFSKAEKFDGITQRNLFPSEILQISGRAGRYGMK 697
Query: 197 FPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHF 255
G V LD + L ++ K+ EP + + N + I + S + ++SL IL+ F
Sbjct: 698 -EEGFVGALDMDTLRIIKKNFFKEPREISIPFNVMANLEHIKLVSSILEENSLSEILKFF 756
Query: 256 LENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATN 315
+EN + + + +N +++L+ A ++D L + KY +P+ + +
Sbjct: 757 VENMEFNGPFRASNLDDMLEAALIVDGFDLDIATKYHLACAPLTLKSPYIVASFESYILA 816
Query: 316 YSKKGIVQLREIFTPGTL--QVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAA 373
KK L I+TP L T L E + K + LY+WLS+R ++ F D E A
Sbjct: 817 LEKK----LPVIYTPPFLVGSFAGTTDELLRAEDMVKEISLYLWLSYRFKDYFIDDEKAR 872
Query: 374 SQKAICSMLIEEFLER 389
+ + + IEE L++
Sbjct: 873 QARGVLNKYIEESLQQ 888
>gi|154286238|ref|XP_001543914.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407555|gb|EDN03096.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 636
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D + VIDEIQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + G
Sbjct: 251 MVPLGQDVEVGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMG 310
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D +++ YERL+PL +N L G+ SN+Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 311 DKLEIHHYERLNPLKAMNRSLKGNLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIV 370
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 158
YGSLP E R++QA FND ++++D LVASDAIGMGLN N
Sbjct: 371 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNFN 409
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 259 AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 317
+++ N+F +C+ + A ID + L + +K +F +P M D S +F +
Sbjct: 434 SQVDPNFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMRDPQMSTIFKEFVRCVA 493
Query: 318 KKGIVQLREIFTPGTLQ-------VPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRE 370
+ L EI G L V ++ L LE++H+ L LY+WLS+R F +R
Sbjct: 494 ENRSGDLLEI---GDLPIDILDKPVSGDKSYLATLETLHRSLVLYLWLSYRCGGVFTNRA 550
Query: 371 LAASQKAICSMLIEEFL 387
LA KA+ + ++ L
Sbjct: 551 LATHVKALTEIKMDRAL 567
>gi|146281980|ref|YP_001172133.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
gi|145570185|gb|ABP79291.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
Length = 786
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 194/384 (50%), Gaps = 15/384 (3%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + ++ D ++VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVAKHATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDSGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+ D
Sbjct: 632 PSLLRSWLTFNRNINYGEAFVSVLPDELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSP 691
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
+ Q A + K+ + + I P L A L LES V++ Y+ L+ L E
Sbjct: 692 A---CQHAQRWIKR-VAEGHAIPMPRLL----LGADLASLESTLHVVETYLHLARSLPEH 743
Query: 366 FPDRELAASQKAICSMLIEEFLER 389
FP+ + + + + I L R
Sbjct: 744 FPEHDDGEEARKLLNDAITRELSR 767
>gi|410728685|ref|ZP_11366799.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410596687|gb|EKQ51346.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 585
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 127/200 (63%), Gaps = 9/200 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++A+LG+ +E+H+CG A +++ I+ D+ +++
Sbjct: 223 YDIAVIDEIQMISDTFRGMAWSKAVLGLQCDEIHICGAANAKFILETIINDCKDEYEIKE 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y+R +PL V +FS N+Q GD IV FS+ + + + RG SI+YG LPP
Sbjct: 283 YKRA---IPLEVEFKNFSYGNVQEGDAIVVFSKKRVLEIAEEYSGRGIK-ASIIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q +F + E +LV +DAIGMG+NL I RIIF +++KFDG E+R+LT EVKQ
Sbjct: 339 EVRKMQYEQF--VNKETKILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQ 396
Query: 186 IAGRAGRYGSKFPVGEVTCL 205
+ GRAGR G + VG + +
Sbjct: 397 VGGRAGRLGI-YDVGYIASV 415
>gi|302804027|ref|XP_002983766.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
gi|300148603|gb|EFJ15262.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
Length = 595
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 135/258 (52%), Gaps = 45/258 (17%)
Query: 116 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 175
CS+VYGSLPPETRT+QA RFN A +F +LVASDAIGMGLNLNI +
Sbjct: 353 CSVVYGSLPPETRTKQAERFNKADEDFSILVASDAIGMGLNLNIQHHLHE---------- 402
Query: 176 RDLTVPEVKQIAGRAGRYGSKFP---VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
AG+ + S P E C + + + + FP
Sbjct: 403 -----------AGQVRWHRSLLPQCHASEANCRPNWKIQV----------QISCCRSFPT 441
Query: 233 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 292
FD I +Y +P+ ILE F+ A + + ++D +PL + ++L
Sbjct: 442 FDQIGLYCSFYPNFPFSAILEKFI-----------ATVTVLCLQSRMLDDIPLPMDSRFL 490
Query: 293 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
FC PVD ++ I L +FA NY+ V L+ + TP T++VP TQ L EL+S+HKVL
Sbjct: 491 FCTCPVDKDNGIIMGALLEFARNYAVNRNVPLKRLLTPATMRVPSTQKDLAELDSLHKVL 550
Query: 353 DLYVWLSFRLEESFPDRE 370
D+Y+WLS+R+E++F DR+
Sbjct: 551 DMYIWLSYRVEDAFVDRD 568
>gi|315925470|ref|ZP_07921681.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621371|gb|EFV01341.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 712
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 124/187 (66%), Gaps = 3/187 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDE Q++ + RG+++T+A+LGI A +H C P A+PL++ ++ GD +V
Sbjct: 312 YDVAVIDECQLIADRERGWAWTQAVLGIAAATVHACMAPEALPLMRALVTECGDSFEVVP 371
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+ER +PL + +++ GD +V FSR ++ + +E G+ + S++YG+LP
Sbjct: 372 HERATPLAMEPGDVAFPEDVRPGDALVVFSRRSVLQAASMLEDAGRRV-SVIYGALPYAA 430
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R + +F S E D++VA+DAIGMG+NL + RI+F +KFDGVE R+LT+PEVKQIA
Sbjct: 431 RRAETHKF--LSGETDMVVATDAIGMGMNLPVKRIVFLETRKFDGVEKRELTIPEVKQIA 488
Query: 188 GRAGRYG 194
GRAGR G
Sbjct: 489 GRAGRRG 495
>gi|384500999|gb|EIE91490.1| hypothetical protein RO3G_16201 [Rhizopus delemar RA 99-880]
Length = 158
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + D AVIDEIQM+ + RG+++T+A LG+ A ++HLCG+ AAVPLI++I + G
Sbjct: 1 MASLGKPLDVAVIDEIQMIADRDRGWAWTQAFLGLKAKQIHLCGEEAAVPLIEKICRDLG 60
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
++V V YERL+P + L S ++ GDC++ FSR I+ +K++IE+ C+++
Sbjct: 61 EEVVVNRYERLTPYSVSDKTLRADLSKVEKGDCVIAFSRGGIFDVKRSIEAVTDLKCAVI 120
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 157
YGSLPPETR QA FND S FDVLVASDA+GMGLNL
Sbjct: 121 YGSLPPETRALQAKAFNDPDSGFDVLVASDAVGMGLNL 158
>gi|182417417|ref|ZP_02948745.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237667662|ref|ZP_04527646.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378731|gb|EDT76257.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237656010|gb|EEP53566.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 584
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 142/235 (60%), Gaps = 17/235 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++++LG+ +E+H+CG A L+ +++ D+ +++
Sbjct: 222 YDIAVIDEIQMISDPFRGMAWSKSVLGLQCDEIHVCGALNAKNLLIDMIEDCKDEYEIKE 281
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y+R PLV + S+++++ GD +V FS+ + + + RG CSI+YG LPPE
Sbjct: 282 YKRAIPLVVEDTNF-SYNHVKDGDALVVFSKKRVLEIAQEYSERGIK-CSIIYGDLPPEV 339
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q +F + E VLV +DAIGMG+NL I RI+F +++KFDG E+R+LT E+KQ+
Sbjct: 340 RKMQYEQF--VNKETKVLVTTDAIGMGVNLPIQRIVFMSIRKFDGEEVRELTSQEIKQVG 397
Query: 188 GRAGRYGSKFPVGEVTC-----------LDSEDLPLLHKSLLEPSPMLESAGLFP 231
GRAGR G + VG V ++ ED P + ++++ PS + S P
Sbjct: 398 GRAGRIGI-YDVGYVAAVGGNSHIIKEKIEREDAP-IERAVIGPSDAILSIKSLP 450
>gi|299470376|emb|CBN78425.1| ATP-dependent RNA and DNA helicase, putative [Ectocarpus
siliculosus]
Length = 361
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 162/317 (51%), Gaps = 31/317 (9%)
Query: 89 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148
+GD +V FSR I+ +KK IES+ H C ++YGSLP ETR QA FN + +DVLVAS
Sbjct: 3 SGDAVVAFSRKDIFSIKKEIESKTPHKCCVIYGSLPQETRAHQARLFNSEDTGYDVLVAS 62
Query: 149 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE--VKQIAGRAGRYGSKFPVGEVTCLD 206
DA+GMGLNLNI R++F + K G + +P +KQI GRAGR+G ++ GE+
Sbjct: 63 DAVGMGLNLNIRRVVFHAVSKRTGGGRAAVKLPPTMLKQIGGRAGRHGKQWEYGEIM--- 119
Query: 207 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-------HPDSS----LYGILEHF 255
+ LEP P A +FP+ + +S +P+ L F
Sbjct: 120 --------NTPLEPIP---KAAIFPSVQHMQEFSNCLDETEADNPEGQERRRLAETFAAF 168
Query: 256 LENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFAT 314
+ AK+ + YF ++ +A + + L L E+Y ++P++ + + + + FAT
Sbjct: 169 ADKAKVGDRYFLGTHDQHQALANALHPVENLTLKERYAISMAPINGRNTLLVRAIFLFAT 228
Query: 315 NYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLE--ESFPDRELA 372
++ G+ + P +PK+ + L S H VLDLY W+ R E F ++ +A
Sbjct: 229 AHA-AGLPVFINMQLPPKGTLPKSMTEFQTLCSKHNVLDLYRWMGVRFPSIECFTEKSVA 287
Query: 373 ASQKAICSMLIEEFLER 389
Q+ +I E L+R
Sbjct: 288 EIQRVELESMINEALKR 304
>gi|341880409|gb|EGT36344.1| hypothetical protein CAEBREN_06112 [Caenorhabditis brenneri]
Length = 658
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ VIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 272 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYY 331
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 332 ERKSPLAIGDKAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTK 390
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 162
QA +FND E +VLVA+DAIGMGLNLNI R+
Sbjct: 391 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIKRV 424
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 226 SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
+ G+ P +D I +S P +S +L+ F+ +S+++F ++ ++A +IDQ+PL
Sbjct: 429 NVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPL 488
Query: 286 RLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE- 344
L +Y FC SP++ +D ++ + A +S G + PK L E
Sbjct: 489 PLKVRYTFCTSPLNTDDKRTAAVFVKMARRFS-TGQALTYDWLIDMLEWPPKPATNLNEL 547
Query: 345 --LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE 388
LE +++LD Y+WLS R + PD + +I+E +E
Sbjct: 548 ALLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKLLDKMIQEGVE 593
>gi|350270438|ref|YP_004881746.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
gi|348595280|dbj|BAK99240.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
Length = 600
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 202/392 (51%), Gaps = 22/392 (5%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
AD+ YD AVIDE+Q+L RG ++TRA+LG+ E+HLCG + +++ GD
Sbjct: 218 ADLGGKYDVAVIDEVQLLADSQRGDAWTRAILGLPCPEIHLCGALLVKEQLTTMIRDCGD 277
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
+ + ++Y RL PL P+ +++ GD +V FS+ A+ L + + G S++YG
Sbjct: 278 EYEFKAYTRLVPLQMEYTPV-HLNHVGKGDALVAFSKGAVLALSRYLSQLGIR-SSVIYG 335
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
LPPE R Q F + VLVA+DAIGMG+NL I R+IF+ ++KFDG R LT
Sbjct: 336 DLPPEVRRGQYDAFIRGKN--PVLVATDAIGMGVNLPIRRLIFTELEKFDGESRRPLTSQ 393
Query: 182 EVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR 241
E+KQIAGRAGR G + VG V CLD E +PL+ + L +E A + P+ ++ +
Sbjct: 394 EIKQIAGRAGRIGI-YEVGYVACLD-ERIPLVEEKLSAEDEPIEQAVVGPSESILQI--- 448
Query: 242 LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPVDM 300
+L + E + E + ++V ++D L P L E+ + + V
Sbjct: 449 -----TLLPLREKLALWSTEPEALPYYRKKDVNNELFLLDLLEPYHLPEQIQWRLMRVPF 503
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
+ +S L+QF+ + + P VP+ Q+ ++LE+ ++ +DLY S
Sbjct: 504 SPG-NSVLLSQFSDYAHACFAADAKRLEKP----VPEGQSC-QQLETYYQQVDLYYSFSK 557
Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGW 392
L+ D + + S I LE+L W
Sbjct: 558 ALDLPI-DEQWVLGTRDRVSARIRSALEKLRW 588
>gi|421615784|ref|ZP_16056804.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
gi|409782320|gb|EKN61885.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
Length = 786
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 197/386 (51%), Gaps = 19/386 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ L + G P ++ + ++ D + VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTQALMMTGPALIEPSLRTLCELCEDRLVVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVARRATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F + +K+DG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYSDEKYDGIQNRQLKVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD++ L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFG-HHDSGEITALDAQTLKSIRQLFNSPDAPVDLSQFQVRPSIDHLTAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVID--QLPLRLHEKYLFCISPVDMNDD 303
SL F N E + +E+ + +ID ++PLRL ++ F +P+ D
Sbjct: 632 PSLLRAWLTFNRNINYGEAFISVLPDELAEWIELIDDPKIPLRL--RWTFACTPIRGGFD 689
Query: 304 ISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLE 363
+ +Q A + K+ + + I P L + L LES V++ Y+ LS L
Sbjct: 690 SPA---SQHAQRWIKR-VAEGHAIPMPRLL----LGSDLASLESTLHVVETYLHLSRALP 741
Query: 364 ESFPDRELAASQKAICSMLIEEFLER 389
E F + + + + + I L R
Sbjct: 742 EHFAEHDQGEDARKLLNDAITRELSR 767
>gi|152992621|ref|YP_001358342.1| hypothetical protein SUN_1028 [Sulfurovum sp. NBC37-1]
gi|151424482|dbj|BAF71985.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 938
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 203/397 (51%), Gaps = 13/397 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + D D VIDEIQM+ + RG+++ AL+G A ++ L G A+ ++ + + G
Sbjct: 508 MMNNAVDVDVCVIDEIQMISDRDRGWAWANALIGAPAKKVILTGSANALHAVEALCEYLG 567
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++++V +ER + LV + PL S I+ +V FSR + LK+ + R + S+VY
Sbjct: 568 EELEVVHFERKNELVTMKHPL-SMKKIEPQTAVVAFSRREVLSLKQQLSER--YSVSVVY 624
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R +A RF + S+ +LV++DAI MGLNL I ++F+ KFDG+ R+L
Sbjct: 625 GNLSPEVRREEARRFREGESQ--ILVSTDAIAMGLNLPIKTLLFAKDNKFDGLRRRELLP 682
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMY 239
EV+QIAGRAGRYG + G V LD+ L + K+ P +E + + + + +
Sbjct: 683 TEVQQIAGRAGRYGFE-EKGYVGALDTAALDTVSKAFHAPLADIELPVSVMASLEHVMLI 741
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 299
+ ++ IL F +N + + AN + +L++A ++D+ L L ++ +P
Sbjct: 742 GEILETENITTILGFFADNMEFDGPFMAANIDSMLEIAAIVDEYDLDLKTRFYLSCAPA- 800
Query: 300 MNDDISSQGLTQFATNYSKK--GIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVW 357
ISS + Y K+ ++R I + +T L E + + LY+W
Sbjct: 801 ---SISSPYIESVFHRYIKQIEAGKKVRYIPPRDLPKFAQTNDMLLNAEDRVREISLYLW 857
Query: 358 LSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
LSF+ F D E A + + IE L + + K
Sbjct: 858 LSFKFPNMFEDTEKAIQARVRLNNYIENSLRQGHFTK 894
>gi|293375148|ref|ZP_06621436.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325838835|ref|ZP_08166682.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292646254|gb|EFF64276.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325490698|gb|EGC93007.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 588
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 199/396 (50%), Gaps = 52/396 (13%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+G RG S+TRALLG+ +E+H+CG A ++ ++++ GD+ +V
Sbjct: 224 YDVAVIDEIQMIGDYQRGSSWTRALLGLRCSEIHVCGALNAKEILLEMIKDCGDEFEVIE 283
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
YERL PLV P + + Q GD + FS+ + +L K + G + S++YG LPPE
Sbjct: 284 YERLVPLVIEKEPF-NHQDTQEGDAFILFSKRKVLQLAKQYKEMGIN-ASVIYGDLPPEV 341
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F + +LV++DAIGMG+NL I RI+F + KFDG E R LT EVKQIA
Sbjct: 342 RKMQYYDF--VHKKNLILVSTDAIGMGVNLPIRRIVFMNLCKFDGEEERFLTSQEVKQIA 399
Query: 188 GRAGRYGSKFPVGEVTC-----------LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GRAGR G + VG V ++ ED P + ++++ PS +L P + +
Sbjct: 400 GRAGRIGI-YEVGYVAGYGRSYSFLKEKIEMEDDP-IEQAVIGPSEVLLQIEGLPLKEKL 457
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
++S + P +LY Y + + + V + + L + ++
Sbjct: 458 ALWSTM-PVETLY---------------YRKMDIRDYILVLDKVRRYKLDEYVEWKLMKL 501
Query: 297 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPK---TQAALRELESIHKVLD 353
P+D+++D L F +Y F +VP+ + L LE+ ++ ++
Sbjct: 502 PIDVHNDEVLSTLLFFIESY-----------FVQKVGEVPRPHLGEVNLSNLETYYQEVN 550
Query: 354 LYVWL--SFRLEESFPDRELAASQKAICSMLIEEFL 387
LY SF +E D E ++ S LI + L
Sbjct: 551 LYYSFCKSFNIE---FDVEWVYDERLRISELINDLL 583
>gi|391328357|ref|XP_003738656.1| PREDICTED: ATP-dependent RNA helicase suv3, mitochondrial-like,
partial [Metaseiulus occidentalis]
Length = 316
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 137/231 (59%), Gaps = 8/231 (3%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D A+IDE QML RG ++T A++G+ A ++++ G P +PLI++I + D + S
Sbjct: 81 DVAIIDEAQMLTDPDRGAAWTAAIMGVPARKVYILGAPDCIPLIRRIATLCNDPLDEISL 140
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL P +++ D ++ FSR + L+ + RG+ + ++VYG+L PE R
Sbjct: 141 ERKSPLRAAAAPT-RLNDLSKSDAVIAFSRRDVLDLRAELMGRGRRV-AVVYGALSPEVR 198
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
+A RFN E D+LVA+DAIGMGLNL+I R+IFS ++KFDG + RDL E++QI G
Sbjct: 199 RAEAARFN--RGEADILVATDAIGMGLNLSIRRVIFSALRKFDGRQSRDLLAQEIRQIGG 256
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLESAGLF-PNFDLI 236
RAGRYG G V L + + +L P PM E L P+ D++
Sbjct: 257 RAGRYG-HHEDGIVGVLAGAGSTSVIQRMLNALPEPMTELRPLVQPDMDIV 306
>gi|397687838|ref|YP_006525157.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
gi|395809394|gb|AFN78799.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
Length = 812
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 197/393 (50%), Gaps = 21/393 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ EL + G P ++ + + D + V+
Sbjct: 397 WDVVVVDEVQMMADSQRGWAWVDALVSAYTPELIMTGPMLIQPSLKTLCDLCEDHLLVKR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + S + G +V FSR + LK +E GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVARRATSLKQLDEGSMLVAFSRKTVLELKALLEMTGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +K+DG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADLMVATDAVGMGLNLPAHTLCFYTDEKYDGIQNRQLRVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G G +T LD + L + + P P+ L + P+ + + + L D
Sbjct: 573 GRAGRFGH-HDSGTITALDGQTLQAIRQLFYSPDQPVDLSQFQVRPSIEHLQAIAELMGD 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N + +E+ + +ID + L +++F +P+
Sbjct: 632 PSLLRAWLTFNRNINYGAEFISILPDELAEWIKLIDDPQIDLRLRWIFACTPI------- 684
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPK--TQAALRELESIHKVLDLYVWLSFRLE 363
GL A ++++ L+++ +++P+ +A L LES +++ Y+ L+ L
Sbjct: 685 RGGLDSPAATHAQQW---LKKVAQDKPVELPRLFIEADLATLESTLHIIETYLHLARTLP 741
Query: 364 ESFPDRELAASQKAICSMLIEEFLERLGWQKPR 396
FP E A +++ + I L R +KPR
Sbjct: 742 AHFPALEQAEGHRSLLNEAITRELSRR--RKPR 772
>gi|253996211|ref|YP_003048275.1| helicase domain-containing protein [Methylotenera mobilis JLW8]
gi|253982890|gb|ACT47748.1| helicase domain protein [Methylotenera mobilis JLW8]
Length = 512
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 196/401 (48%), Gaps = 23/401 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + + + AVIDEIQML RG ++T AL+G+ A + +CG A ++
Sbjct: 99 MMNAHKEVEVAVIDEIQMLQDPDRGSAWTAALVGVPAATVFICGSTAVTAPCIATIKTLN 158
Query: 61 DDVKVQSYERLSPLVPLNVPL--GSFS------NIQTGDCIVTFSRHAIYRLKKAIESRG 112
+ + R +PLV L +S +Q GD I+ FSR + G
Sbjct: 159 ESYDITQLVRKTPLVLEQDSLCGKHYSRQKLKPKLQKGDAIIAFSRKDVLTFAARFRQWG 218
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
+ SI YG+L PE R ++ RFN + + D+LVA+DAIGMGLNL I RIIF+ + KFDG
Sbjct: 219 FSVASI-YGALSPEVRRTESERFN--TGQADILVATDAIGMGLNLPIRRIIFANIHKFDG 275
Query: 173 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH-KSLLEPSPMLESAGLFP 231
V R L + EV+QIAGRAGR+G + G V+ L++++ LLH + +L + + L
Sbjct: 276 VASRLLNMTEVRQIAGRAGRFGI-YATGYVSVLENDE--LLHIEHMLSADDTADLSKLPV 332
Query: 232 NFDLIYMYSRLHP--DSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP--LR 286
N +L + + H + + +L + E + + F A+ + A ++D +
Sbjct: 333 NINLQQVSNIAHQMHTNKIAEVLSYHQERTRFNHAIFEQASLTTQITQALIVDAYAPKMS 392
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELE 346
L +KY+F +P+ +N + ++ I L + Q PK L E E
Sbjct: 393 LKDKYIFVFAPISLNVAFEKDYYLLCLKSVAESTIRHLPAAPSWLEAQNPKH---LEEAE 449
Query: 347 SIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
+ L LY WLSF+ + F D + ++ + S IE L
Sbjct: 450 MLSHNLSLYAWLSFKFPQHFVDGQQVSALRTQVSRYIERAL 490
>gi|150017290|ref|YP_001309544.1| helicase domain-containing protein [Clostridium beijerinckii NCIMB
8052]
gi|149903755|gb|ABR34588.1| helicase domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 585
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 9/200 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++ALLG+ +E+H+CG A +++ I+ D+ +++
Sbjct: 223 YDIAVIDEIQMISDPFRGMAWSKALLGLQCDEIHICGAANAKYILETIISDCKDEYEIRE 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y R +PL V +FS ++Q GD +V FS+ + + + SR SI+YG LPP
Sbjct: 283 YTRA---IPLEVEYKNFSYNDVQEGDAVVVFSKKRVLEIAEEYSSRNIK-ASIIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q +F + E +LV +DAIGMG+NL I RIIF +++KFDG E+R+LT E+KQ
Sbjct: 339 EVRKMQYEQF--INKETKILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQ 396
Query: 186 IAGRAGRYGSKFPVGEVTCL 205
+ GRAGR G + VG + +
Sbjct: 397 VGGRAGRLGI-YDVGYIASV 415
>gi|255524643|ref|ZP_05391596.1| helicase domain protein [Clostridium carboxidivorans P7]
gi|255511667|gb|EET87954.1| helicase domain protein [Clostridium carboxidivorans P7]
Length = 585
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
DV +YD A+IDEIQM+ RG ++TRALLG+ E+H+CG + L+ I++ D
Sbjct: 218 DVNEEYDIAIIDEIQMINDDQRGAAWTRALLGLNCKEIHICGAINSKELLIDIIEDCQDQ 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ + Y+R PLV + GSFS +IQ GD +V FS+ + L S G S++Y
Sbjct: 278 YEFKEYKRSIPLV---MEYGSFSRKSIQDGDALVVFSKKRVLELAYYYGSLGIK-ASLIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPE R +Q +F + E +LV +DAIGMG+NL I RIIF +KKFDG ++R L
Sbjct: 334 GDLPPEVRRKQYEQF--INKETKILVTTDAIGMGVNLPIRRIIFMNVKKFDGSQVRFLNS 391
Query: 181 PEVKQIAGRAGRYG 194
EVKQIAGRAGR G
Sbjct: 392 QEVKQIAGRAGRKG 405
>gi|440784950|ref|ZP_20961987.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
gi|440218600|gb|ELP57819.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
Length = 585
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ YD AVIDE+QM+ RG ++TRA+LGI NE+H+CG A PL+ I++ D
Sbjct: 218 DIKEIYDVAVIDEVQMIDDDQRGAAWTRAILGIQCNEIHVCGAYNASPLLLDIIEDCNDK 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
K++ Y R PL ++ ++ + + GD +V FS+ + L + G SI+YG
Sbjct: 278 YKLKRYIRDIPL-KIDYRTFAYRDAEEGDALVAFSKKMVLNLAYYYSNMGIK-ASIIYGD 335
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LPPE R +Q +F + E +L+ +DAIGMG+NL I RI+F +KKFDG E+R L E
Sbjct: 336 LPPEVRKKQYEQF--INKETKILITTDAIGMGVNLPIKRIVFMDIKKFDGNEMRYLKSQE 393
Query: 183 VKQIAGRAGRYG 194
VKQIAGRAGR G
Sbjct: 394 VKQIAGRAGRKG 405
>gi|389584589|dbj|GAB67321.1| ATP-dependent DEAD box helicase, partial [Plasmodium cynomolgi
strain B]
Length = 586
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 31/236 (13%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YDC VIDEIQM+ TRG ++T LL + E++LCG + L++++ + D + ++
Sbjct: 70 YDCVVIDEIQMINHDTRGCAWTNVLLNLDCEEIYLCGSDNIISLVKKLADLLEDQLIIKR 129
Query: 68 YERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
+ERL+ L V N + ++TGDC++TFSR++I LK +E K + ++YGSLPPE
Sbjct: 130 FERLTDLHVEENTV--EWEKLKTGDCVITFSRNSIMLLKNRLERLNKRV-FVIYGSLPPE 186
Query: 127 TRTRQATRFNDASS------EFD------------------VLVASDAIGMGLNLNISRI 162
+ Q FN + E D +L+A+D IGMG+N+NI RI
Sbjct: 187 IKRMQVESFNRCCAGEGSIGEADENEKAELPPSTCDKKKQTILIATDVIGMGVNINIRRI 246
Query: 163 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPV-GEVTCLDSEDLPLLHK 215
IF +++KFDG LR L EV QIAGRAGRY G + P+ G VTC+ + DL ++ +
Sbjct: 247 IFYSLQKFDGDRLRHLYASEVLQIAGRAGRYHHGIREPITGYVTCVYAHDLSIIKR 302
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 40/218 (18%)
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
V Q +G P + L + PLL + + AG FP+F++I
Sbjct: 362 VSQHNAHVALFGEITPSSKGNILKNSHFVDPLLFQQRERKNNTCTKAGFFPDFNMINKLK 421
Query: 241 RL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLPLRLHEKYLF 293
++ L+ I+ ++ AKL+E+YFF N +++ +A + + L +++
Sbjct: 422 KMLEYEHKAKVELHEIMSILVDYAKLNEDYFFLTKNYNQMILIAKFLKDIKLDSETLFVY 481
Query: 294 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALR---------- 343
+SP+++ND L FA + V E VP T +A+R
Sbjct: 482 TLSPINVNDINMLTTLRTFALCHELLNFVDFFECINRDI--VPTTTSAIRLDFPLSATPF 539
Query: 344 -------------------ELESIHKVLDLYVWLSFRL 362
LE ++++DLY WL +
Sbjct: 540 NVSPGYSNHPHMGIEECLSVLELYYEIIDLYCWLHTKF 577
>gi|399886926|ref|ZP_10772803.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium arbusti SL206]
Length = 585
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 6/234 (2%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ Y+ AVIDE+QM+ RG ++TRA+L + NE+H+CG A L+ I++ D+
Sbjct: 218 DISKYYEVAVIDEVQMIDDDQRGAAWTRAILALNCNEIHVCGALNAKQLLLDIIEDCNDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
K + Y+R PL ++ ++ +++ GD +V FS+ + L S G SI+YG
Sbjct: 278 YKFKEYKRDIPL-QMDYKTFAYRHVEDGDALVVFSKKMVLNLAYYFSSSGIK-ASIIYGD 335
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LP E R +Q +F AS E +L+ +DAIGMG+NL I RI+F +KKFDG E+R L E
Sbjct: 336 LPAEVRKKQYKQF--ASGETKILITTDAIGMGVNLPIKRIVFMDIKKFDGNEVRYLNSQE 393
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
VKQIAGRAGR G + VG V ++ + ++L +LE A + P+ +++
Sbjct: 394 VKQIAGRAGRKGI-YDVGYVATYNNVQ-DYIRENLEVEDKILEQAVVGPSEEIL 445
>gi|431927872|ref|YP_007240906.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826159|gb|AGA87276.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 786
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 15/365 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D V+DE+QM+ RG+++ AL+ +L + G P ++ + + D + VQ
Sbjct: 397 WDVVVVDEVQMMADPQRGWAWVDALVSAHTPQLMMTGPALIEPSLRTLCDLCEDKLVVQR 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +ES GK + S+VYG+L PE
Sbjct: 457 TKRLSP-VEVARHATTLERLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + E D++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI
Sbjct: 515 RREQARRFREG--EADIMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLNVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T LD + L + + P +P+ L + P+ D + S L +
Sbjct: 573 GRAGRFGHH-DNGEITALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N E + +E+ + +ID + L ++ F +P+ D
Sbjct: 632 PSLLRAWLTFNRNINYGEAFISILPDELAEWIELIDDPKVPLWLRWTFACTPIRGGFDSP 691
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEES 365
+ +Q A + K+ + + I P L + L LES V++ Y+ L+ L E
Sbjct: 692 A---SQHAQRWIKR-VAEGHAIAMPKLL----LGSDLASLESTLHVVETYLHLARSLPEH 743
Query: 366 FPDRE 370
F + +
Sbjct: 744 FTEHD 748
>gi|82540244|ref|XP_724456.1| helicase [Plasmodium yoelii yoelii 17XNL]
gi|23479098|gb|EAA16021.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 963
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 139/253 (54%), Gaps = 42/253 (16%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDCA+IDEIQM+ RG+++T L+ + E++LCG V LI+++ +
Sbjct: 310 MTPLNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILH 369
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V ++ ++RL+ L L + + +++TGDCI++FSR+ I LK +E K + ++Y
Sbjct: 370 DQVIIKRFKRLNKL-KLEENVQALDDVKTGDCIISFSRNNIMLLKTKLEKLNKRVF-VIY 427
Query: 121 GSLPPETRTRQATRFN----DASSEFD--------------------------------V 144
G+LPPE++ +Q FN ++ D V
Sbjct: 428 GTLPPESKKKQIELFNYYCKQTKNDCDNIKLKKNNDEENIKNEIYHIENYNHGNQKKETV 487
Query: 145 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPVG 200
LVA+D IGMGLN+ I RIIF ++KK+DG +R L V E+ QIAGRAGR+ G
Sbjct: 488 LVATDVIGMGLNIKIRRIIFYSLKKYDGDIIRYLNVSEILQIAGRAGRFDKNDSENSSDG 547
Query: 201 EVTCLDSEDLPLL 213
VTC++ ED+ +L
Sbjct: 548 FVTCVNFEDMNIL 560
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 227 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 279
AG FPNFD I S++ LY IL+ ++ KL+++YFF N +++ +A
Sbjct: 662 AGYFPNFDTIEKLSKILEFEYKAKIELYEILQILIDYLKLNDSYFFLTKNYNQIIFIAKF 721
Query: 280 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQV 335
+ + + + +++ ISPV++N+ I L F ++S G V E L +
Sbjct: 722 LKNINIDKNILFIYTISPVNINNIIMINILRTFIMSHSILGYVDFFECINADMLSM 777
>gi|433445404|ref|ZP_20409812.1| helicase [Anoxybacillus flavithermus TNO-09.006]
gi|432001102|gb|ELK21986.1| helicase [Anoxybacillus flavithermus TNO-09.006]
Length = 893
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 203/401 (50%), Gaps = 46/401 (11%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
+V +++ VIDE Q+L +TRG ++ +A++G A E+HL P AV L+Q +L
Sbjct: 479 VNVNEEFEVVVIDECQLLADETRGAAWVKAIIGAKAKEIHLVVAPHAVGLLQTLLTYHQF 538
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
D +V ++R +PL+ +++Q GD ++ FS+ + + ++ RG ++ S++YG
Sbjct: 539 DFEVIEHKRTTPLIWEEKDFSFPNDLQKGDALIVFSKKNVLHVAASLVKRGYNV-SVLYG 597
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
S+PPETR +Q +F + D+L+A+DAIGMG+NL I R+IF KKFDG +R L
Sbjct: 598 SMPPETRRKQVRQFRKGLT--DILIATDAIGMGMNLPIRRVIFMESKKFDGKAVRTLKAE 655
Query: 182 EVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP--SPM--------LESAGLFP 231
EV+QIAGRAGR G + G V + + K LLE +P+ +ES FP
Sbjct: 656 EVQQIAGRAGRKGI-YEEGFVCAMVNRKKI---KKLLEAPVAPIEYSFLPISIESLKKFP 711
Query: 232 --NFDLI---YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 286
+FDL + + + + Y + E ++ F VL+ A ++ L
Sbjct: 712 YESFDLFKRAWSFYQNELKETPYRV----REISEWERKMF------VLEKALKKMKIELP 761
Query: 287 LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVP---KTQAALR 343
L +K FC P + + T + + +RE T G + +P + A+
Sbjct: 762 LWKKLSFCFVPFSIEE-----------TKITDCWLTMIREYLTEGKVSLPPILTSVDAID 810
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIE 384
ELE+ +K L L+ ++ SF + E+ ++ I + E
Sbjct: 811 ELENGYKQLMLFTSFAYSQSLSFNEEEVFELKEKISEKIFE 851
>gi|28211047|ref|NP_781991.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
gi|28203486|gb|AAO35928.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
Length = 593
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 9/204 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ YD A+IDEIQM+ RG ++TRA LG+ E+H+CG + +I +I++ D+
Sbjct: 226 DINKVYDVAIIDEIQMIDDDERGAAWTRAFLGLNCEEIHICGAINSKDIITEIVEDCQDE 285
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ + Y+R +PL + SFS +I+ GD +V FS+ + +L K G S++Y
Sbjct: 286 YEFKEYKRD---IPLEMEFESFSYRDIKEGDALVVFSKKRVLQLAKNYADMGIK-SSLIY 341
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G LPPE R +Q +F + E +L+ +DAIGMG+NL I RIIF +KKFDG E+R L
Sbjct: 342 GDLPPEVRKKQYKQF--INKESSILITTDAIGMGVNLPIRRIIFMDVKKFDGSEIRYLNS 399
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTC 204
EVKQIAGRAGR G + +G V+
Sbjct: 400 QEVKQIAGRAGRKGI-YEIGYVSS 422
>gi|187933176|ref|YP_001886414.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
gi|187721329|gb|ACD22550.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
Length = 585
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 21/230 (9%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++A+LG+ +E+H+CG A +++++L+ D+ +++
Sbjct: 223 YDIAVIDEIQMISDTHRGMAWSKAVLGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKD 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y+R +PL V +F+ +++ GD IV FS+ + + + G S++YG LPP
Sbjct: 283 YKRS---IPLEVEYKNFNYNDVKDGDAIVVFSKKRVLEIAEDYSREGIK-ASVIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q +F + E VLV +DAIGMG+NL I RIIF +++KFDG E+R+LT EVKQ
Sbjct: 339 EVRRMQYEQF--VNKETKVLVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQ 396
Query: 186 IAGRAGRYGSKFPVGEV-----------TCLDSEDLPLLHKSLLEPSPML 224
+ GRAGR G + VG + + L++ED ++ K+++ PS +
Sbjct: 397 VGGRAGRIGI-YDVGYIAGVGGTADFIKSKLEAED-NIIRKAVVGPSDAI 444
>gi|188590617|ref|YP_001921407.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|251777622|ref|ZP_04820542.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188500898|gb|ACD54034.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|243081937|gb|EES47827.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 585
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 142/230 (61%), Gaps = 21/230 (9%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++A+LG+ +E+H+CG A +++++L+ D+ +++
Sbjct: 223 YDIAVIDEIQMISDTHRGMAWSKAVLGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKD 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y+R +PL V +F+ +++ GD IV FS+ + + + G S++YG LPP
Sbjct: 283 YKRS---IPLEVEYKNFNYNDVKDGDAIVVFSKKRVLEIAEDYSREGIK-ASVIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q +F + E VLV +DAIGMG+NL I RI+F +++KFDG E+R+LT EVKQ
Sbjct: 339 EVRRMQYEQF--VNKETKVLVTTDAIGMGVNLPIRRIVFMSIRKFDGEEVRELTSQEVKQ 396
Query: 186 IAGRAGRYGSKFPVGEV-----------TCLDSEDLPLLHKSLLEPSPML 224
+ GRAGR G + VG + + L++ED ++ K+++ PS +
Sbjct: 397 VGGRAGRIGI-YDVGYIAGVGGTADFIKSKLEAED-NIIRKAVVGPSEAI 444
>gi|359412285|ref|ZP_09204750.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
gi|357171169|gb|EHI99343.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
Length = 585
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 9/200 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD AVIDEIQM+ RG ++++A+LG+ +E+H+CG A +++ I++ DD +++
Sbjct: 223 YDIAVIDEIQMISDPFRGMAWSKAVLGLKCDEIHICGAANARFILETIIKDCKDDYEIKE 282
Query: 68 YERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y R +PL + +FS + GD IV FS+ + + + SRG S++YG LPP
Sbjct: 283 YTRA---IPLEIEYKNFSYNDAVEGDAIVVFSKKRVLEIAEEYSSRGIR-TSVIYGDLPP 338
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
E R Q +F + E +LV +DAIGMG+NL I RIIF +++KFDG E+R+LT EVKQ
Sbjct: 339 EVRKMQYEQF--INKENKILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQ 396
Query: 186 IAGRAGRYGSKFPVGEVTCL 205
+ GRAGR G + VG + +
Sbjct: 397 VGGRAGRIGI-YDVGYIASV 415
>gi|221057864|ref|XP_002261440.1| ATP dependent DEAD-box helicase [Plasmodium knowlesi strain H]
gi|194247445|emb|CAQ40845.1| ATP dependent DEAD-box helicase, putative [Plasmodium knowlesi
strain H]
Length = 939
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 135/237 (56%), Gaps = 30/237 (12%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDC V+DEIQM+ TRG ++T LL + E++LCG + L++++ +
Sbjct: 299 MTPLDKQYDCVVVDEIQMINHDTRGCAWTNVLLNLECEEIYLCGSDNIISLMKKLADLLE 358
Query: 61 DDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D++ ++ +ERL L V N + ++TGDC++TFSR++I LK +E K + ++
Sbjct: 359 DELTIKQFERLGKLHVQENTV--EWEKLKTGDCVITFSRNSIMMLKNRLERLNKRV-FVI 415
Query: 120 YGSLPPETRTRQATRFNDASSEFD-----------------------VLVASDAIGMGLN 156
YGSLPPE + Q FN ++ + +L+A+D IGMG+N
Sbjct: 416 YGSLPPELKRSQVELFNRCCAQQEKIEQVDDIPKAEVPFSNDKKKETILIATDVIGMGVN 475
Query: 157 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 210
+NI RIIF +++KFDG +LR L EV QIAGRAGR+ G + G VTC + DL
Sbjct: 476 INIRRIIFYSLQKFDGDKLRYLYASEVLQIAGRAGRFHHNGGEPITGYVTCFHAHDL 532
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 227 AGLFPNFDLIYMYSRL--HPDSS---LYGILEHFLENAKLSENYFF--ANCEEVLKVATV 279
AG FP+F++I R+ H + L+ I+ ++ AKL++NYFF N +++ +A
Sbjct: 645 AGFFPDFNMINQLKRMLEHEHKAKVELHEIMSILVDYAKLNDNYFFLTKNYNQMITIAKF 704
Query: 280 IDQLPLRLHEKYLFCISPVDMND 302
+ ++ L +++ + P+++ND
Sbjct: 705 LKEIKLDNETLFVYTLCPINVND 727
>gi|187779986|ref|ZP_02996459.1| hypothetical protein CLOSPO_03582 [Clostridium sporogenes ATCC
15579]
gi|187773611|gb|EDU37413.1| helicase C-terminal domain protein [Clostridium sporogenes ATCC
15579]
Length = 588
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 157/283 (55%), Gaps = 27/283 (9%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALKCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFRLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RIIF ++KFDG ++R LT
Sbjct: 334 GNLPPEVRRKQYEQF--ISKDSNILITTDAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL----------LHKSLLEPSPMLESAGLF 230
EVKQI GRAGR+G + +G + + + ++++++EPS +
Sbjct: 392 QEVKQIGGRAGRFGI-YDIGYIASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSL 450
Query: 231 PNFDLIYMYSRLHPDSSLY---GILEHFL-----ENAKLSENY 265
P + + ++S S LY I E L +N KL E Y
Sbjct: 451 PLREKLALWSTREEKSLLYRKMDIGEKILVLDSIKNYKLPEKY 493
>gi|319653094|ref|ZP_08007196.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
gi|317395015|gb|EFV75751.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
Length = 858
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 14/251 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ 66
YD VIDE QM+ K RGFS+ +A+ ANE+H+ G +A ++ LQ+ G+ D+++
Sbjct: 454 YDVIVIDEAQMITDKDRGFSWYKAITKANANEVHIIGSRSAKSMM---LQLLGEADIELN 510
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y R PL + FS+++ GD ++ FSR + ++ G H S++YG++PPE
Sbjct: 511 EYSRDIPL-EVEAKEFKFSHVRKGDALICFSRKRVLETASRLQQEG-HSVSMIYGAMPPE 568
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q RF E V+V++DAIGMGLNL I RI+F KFDG + R LT EVKQI
Sbjct: 569 TRKKQVQRF--TKGETSVIVSTDAIGMGLNLPIRRIVFLENDKFDGTKRRTLTSQEVKQI 626
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFDLIYMYSRLHPD 245
AGRAGR G + +G+V ++D+ + K+LLE + S + P + + R + D
Sbjct: 627 AGRAGRKGL-YNIGKVAF--TKDIKRM-KALLEMEDAPVHSFAIAPTNTVFERFQRYYRD 682
Query: 246 -SSLYGILEHF 255
S + + + F
Sbjct: 683 LGSFFELWDKF 693
>gi|386284065|ref|ZP_10061288.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
gi|385344968|gb|EIF51681.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
Length = 938
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 201/398 (50%), Gaps = 27/398 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D D VIDEIQM+ + RG+++ AL+G+ A ++ L G A+ ++++ + +++++
Sbjct: 515 DVDVCVIDEIQMIADRDRGWAWANALIGVPARKVILTGSSDALHAVKELCEYLDEELEIV 574
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
+ER + L L P S +I+ +V FSR + LK+ + K+ S+VYG+L PE
Sbjct: 575 HFERKNELTMLPNP-TSMKHIEPQTAVVAFSRRDVLSLKQQLSE--KYSVSVVYGNLSPE 631
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
R +A RF + S+ +LVA+DAI MGLNL I ++FS KFDG+ R+L EV QI
Sbjct: 632 VRREEARRFREGESQ--ILVATDAIAMGLNLPIKTLLFSKDNKFDGLRRRELLPTEVLQI 689
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMYSRLHPD 245
+GRAGRYG + G V LD L + + P P L+ + + + + + +
Sbjct: 690 SGRAGRYGFE-EKGYVGALDETALDTITSAFHMPLPDLKLPVSVMASLEHVMLIGEILET 748
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
++ IL F EN + + AN + +L++A ++ + L L +Y +P IS
Sbjct: 749 DNILDILAFFSENMEFEGPFVAANIDSMLEIAAIVSEYSLDLKTRYYLSCAPA----SIS 804
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPG-TLQVP--------KTQAALRELESIHKVLDLYV 356
S + Y +R+I G L +P +T L E + + LY+
Sbjct: 805 SPYIESVFHRY-------IRQIEAGGKVLYIPPRDLPAFAQTNDMLLNAEDRVREISLYL 857
Query: 357 WLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK 394
WLSF+ + F D + A + + + IE L + + K
Sbjct: 858 WLSFKFPDIFQDTDKAVAARVRLNNFIENSLRQGHFTK 895
>gi|307719997|ref|YP_003891137.1| helicase domain-containing protein [Sulfurimonas autotrophica DSM
16294]
gi|306978090|gb|ADN08125.1| helicase domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 931
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 192/372 (51%), Gaps = 9/372 (2%)
Query: 17 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76
QM+ + RG+++ A++G A E+ + G P I + + G++++++ +ER +PL
Sbjct: 524 QMIDDRDRGWAWANAIIGAPAKEVIMTGSPNVKEAIIALAEYLGEELEIREFERKNPLEL 583
Query: 77 LNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 136
L P +++ I+ FSR + RLK+ + S+VYG+L PE R +A RF
Sbjct: 584 LEKPTHP-KDVEAATAIIAFSRKDVLRLKQNFSKDFE--VSVVYGNLSPEVRREEARRFR 640
Query: 137 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
+ ++ +LVA+DAI MG+NL I ++FS +KFDG+ R+L E+ QIAGRAGRYG
Sbjct: 641 EGETQ--ILVATDAIAMGMNLPIKTVLFSKAEKFDGIIQRNLFPSEIHQIAGRAGRYGL- 697
Query: 197 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESA-GLFPNFDLIYMYSRLHPDSSLYGILEHF 255
G V L ++ L ++ K+ + + + + N + I + S + ++SL IL F
Sbjct: 698 HENGYVGALHADALNIVKKNFNKRAKEINVPFKVMANLEHIKLVSTILEENSLEEILRFF 757
Query: 256 LENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATN 315
++N ++ A+ +++L+ + ++D L + KY +P+ + ++
Sbjct: 758 IKNMVFDGPFYAASLDDMLEASRIVDSYDLDIATKYHLACAPLTLKSAYIISAYERYINA 817
Query: 316 YSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQ 375
KK V G+ +T L E + K + LY+WLS+R E F D A +
Sbjct: 818 LEKKEPVYYHAPKLTGS--YAQTSEELLRAEDMVKEISLYLWLSYRFNEYFVDENKARAY 875
Query: 376 KAICSMLIEEFL 387
+ + + IEE L
Sbjct: 876 RGVLNKYIEETL 887
>gi|89097581|ref|ZP_01170470.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89087877|gb|EAR66989.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 860
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 142/242 (58%), Gaps = 27/242 (11%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+D AVIDE QM+ K RGFS+ +A+ A+E+H+ G ++ ++ Q+L+ G D+++
Sbjct: 454 FDIAVIDEAQMITDKDRGFSWYKAITKANASEVHIIGSKSSQSILLQLLE--GTDLEIHE 511
Query: 68 YERLSPLV--PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y R +PL+ P L + + GD ++ FSR + +++ G+ + S++YGS+PP
Sbjct: 512 YHRDTPLIVEPDEFRL---KHSRKGDALICFSRKRVLETASRLQNDGRSV-SMIYGSMPP 567
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
ETR +Q RF D E +++V++DAIGMGLNL I R++F +KFDGV R LT EVKQ
Sbjct: 568 ETRKKQVQRFIDG--ETNIIVSTDAIGMGLNLPIRRVVFLENEKFDGVSRRQLTSQEVKQ 625
Query: 186 IAGRAGRYGSKFPVGEV----------TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
IAGRAGR G + G V + L+ ED P +H + P ++G+F F
Sbjct: 626 IAGRAGRKGL-YNTGRVAFMENIKEMGSLLEQEDDP-VHTFSIAP-----TSGVFDRFQK 678
Query: 236 IY 237
Y
Sbjct: 679 YY 680
>gi|317128751|ref|YP_004095033.1| helicase [Bacillus cellulosilyticus DSM 2522]
gi|315473699|gb|ADU30302.1| helicase domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 850
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 140/240 (58%), Gaps = 18/240 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ 66
+D VIDE QM+ K RGFS+ +A+ ANE+H+ G +V + ILQ+ GD +V +
Sbjct: 445 FDVIVIDEAQMIADKDRGFSWYKAITKANANEVHIIG---SVNSKEMILQLLGDSNVVIH 501
Query: 67 SYERLSPLVPLNVPLGSFSNIQT--GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
YER +PL V F+ QT GD +V FSR + +E+ G H S+VYGS+P
Sbjct: 502 EYERD---IPLQVEKKEFNLKQTKKGDALVCFSRRRVLETASNLENNG-HRVSMVYGSMP 557
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PETR +Q F D + V+V++DAIGMGLNL I RI+F KFDG R L+ EVK
Sbjct: 558 PETRKKQMKLFIDGKT--TVIVSTDAIGMGLNLPIRRIVFLENDKFDGTRRRRLSSQEVK 615
Query: 185 QIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN---FDLIYMYSR 241
QIAGRAGR G + VG+V ++++ L+ + L + +++ + P F+ YSR
Sbjct: 616 QIAGRAGRKGI-YDVGKVAF--TKEIKLMKRLLNQQDFPVQTFAIAPTNNVFERFQHYSR 672
>gi|387817640|ref|YP_005677985.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
gi|322805682|emb|CBZ03247.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|153939905|ref|YP_001390728.1| helicase [Clostridium botulinum F str. Langeland]
gi|152935801|gb|ABS41299.1| helicase domain protein [Clostridium botulinum F str. Langeland]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|226948645|ref|YP_002803736.1| helicase domain-containing protein [Clostridium botulinum A2 str.
Kyoto]
gi|226840809|gb|ACO83475.1| helicase domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|168180037|ref|ZP_02614701.1| helicase domain protein [Clostridium botulinum NCTC 2916]
gi|182668949|gb|EDT80925.1| helicase domain protein [Clostridium botulinum NCTC 2916]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|170756170|ref|YP_001781019.1| helicase [Clostridium botulinum B1 str. Okra]
gi|429245241|ref|ZP_19208647.1| helicase [Clostridium botulinum CFSAN001628]
gi|169121382|gb|ACA45218.1| helicase domain protein [Clostridium botulinum B1 str. Okra]
gi|428757730|gb|EKX80196.1| helicase [Clostridium botulinum CFSAN001628]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|148379343|ref|YP_001253884.1| helicase domain-containing protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931568|ref|YP_001383718.1| helicase [Clostridium botulinum A str. ATCC 19397]
gi|153937286|ref|YP_001387266.1| helicase [Clostridium botulinum A str. Hall]
gi|148288827|emb|CAL82911.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927612|gb|ABS33112.1| helicase domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152933200|gb|ABS38699.1| helicase domain protein [Clostridium botulinum A str. Hall]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|170760794|ref|YP_001786756.1| helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407783|gb|ACA56194.1| helicase domain protein [Clostridium botulinum A3 str. Loch Maree]
Length = 588
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFRLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|298242251|ref|ZP_06966058.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555305|gb|EFH89169.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 961
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 127/227 (55%), Gaps = 6/227 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D S C VIDE MLG RG+++TRAL+ A E+ + G AA PL++++L G
Sbjct: 543 MFDARSGGGCVVIDEAHMLGDPDRGWAWTRALMEARAEEMLVLGPLAARPLVERLLYAVG 602
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ RL PL P ++ +V FSR + LK +E G+ + SIVY
Sbjct: 603 QPFTFEQSSRLVPLRMATTPY-KLRDLPARTVVVAFSRGMVLALKADLEQMGRKV-SIVY 660
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R RQA RF A E ++ VA+DAIGMGLNL + F KK+DG +R LT
Sbjct: 661 GALPPEVRRRQADRF--ACGETEICVATDAIGMGLNLPADAVCFYETKKYDGKRVRPLTA 718
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLES 226
EV QI GRAGR+G G +T L+ DL L + + PSP+ ++
Sbjct: 719 MEVHQIGGRAGRFGLA-EQGIITALNKVDLDFLRQQFEQTPSPIRQA 764
>gi|168184312|ref|ZP_02618976.1| helicase domain protein [Clostridium botulinum Bf]
gi|182672597|gb|EDT84558.1| helicase domain protein [Clostridium botulinum Bf]
Length = 588
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 121/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAMLALRCKEIHVCGALNTKELITNIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R L
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|237794720|ref|YP_002862272.1| helicase domain-containing protein [Clostridium botulinum Ba4 str.
657]
gi|229261095|gb|ACQ52128.1| helicase domain protein [Clostridium botulinum Ba4 str. 657]
Length = 588
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 121/194 (62%), Gaps = 8/194 (4%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +YD A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+
Sbjct: 218 DINEEYDVAIIDEIQMIDDDQRGSAWTRAMLALRCKEIHVCGALNTKELITNIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R L
Sbjct: 334 GNLPPEVRKKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNS 391
Query: 181 PEVKQIAGRAGRYG 194
E+KQI GRAGR G
Sbjct: 392 QEIKQIGGRAGRLG 405
>gi|424827215|ref|ZP_18252024.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
gi|365980138|gb|EHN16174.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
Length = 588
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 159/283 (56%), Gaps = 27/283 (9%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ ++YD A+IDEIQM+ RG ++TRA+L + E+H+CG + LI I++ GD+
Sbjct: 218 DINAEYDVAIIDEIQMIDDDQRGSAWTRAILALKCKEIHVCGALSTKELIINIIEDCGDE 277
Query: 63 VKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++ Y R +PL + +F +I+ GD +VTFS+ + +L G S++Y
Sbjct: 278 YELKEYFRN---IPLKIEQEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIY 333
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+LPPE R +Q +F S + ++L+ +DAIGMG+NL I RIIF ++KFDG ++R LT
Sbjct: 334 GNLPPEVRKKQYEQF--ISEDSNILITTDAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTS 391
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDS------EDLPL----LHKSLLEPSPMLESAGLF 230
EVKQI GRAG G + +G + + E + + ++++++EPS +
Sbjct: 392 QEVKQIGGRAGILGI-YDIGYIASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSL 450
Query: 231 PNFDLIYMYSRLHPDSSLY---GILEHFL-----ENAKLSENY 265
P + + ++S S LY I E L +N KL E Y
Sbjct: 451 PLREKLALWSTREEKSLLYRKMDIGEKILVLDSIKNYKLPEKY 493
>gi|149180840|ref|ZP_01859342.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148851359|gb|EDL65507.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 858
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 145/266 (54%), Gaps = 19/266 (7%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
++D VIDE QM+ K RGFS+ +A+ A E+H+ G P++ +L+ DV++
Sbjct: 452 EEFDVVVIDEAQMMADKDRGFSWYKAITKARAREVHIIGSRNVKPMLLGLLENC--DVEI 509
Query: 66 QSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
Y R +PL V FS + + GD +V FSR + +++ G H S++YGS+
Sbjct: 510 NEYNRD---IPLQVEEREFSLKHAKRGDALVCFSRRRVLETASKLQNNG-HSVSMIYGSM 565
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
PPETR +Q RF E V+VA+DAIGMGLNL I RI+F KFDG R LT EV
Sbjct: 566 PPETRKKQMQRF--IKGETRVIVATDAIGMGLNLPIRRIVFLENDKFDGTRRRILTSQEV 623
Query: 184 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
KQIAGRAGR G + VG+V ++D+ + K L + ++S + P + + + +
Sbjct: 624 KQIAGRAGRKGI-YDVGKVAF--TKDIKKMSKLLDQEDEPVQSFAIAPTNSIFERFQKYY 680
Query: 244 PD-SSLYGILEHF-----LENAKLSE 263
D + + E F + A LSE
Sbjct: 681 HDLGRFFELWEKFESPFGTQKASLSE 706
>gi|311032935|ref|ZP_07711025.1| helicase domain-containing protein [Bacillus sp. m3-13]
Length = 862
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 9/196 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD-VKVQ 66
Y+ VIDE QM+ K RGFS+ +A+ A+E+H+ G + + + +LQ+ G+ +++
Sbjct: 454 YEVIVIDEAQMIADKDRGFSWYKAITKANADEVHIVG---SFSMREMVLQLLGNAAIEIN 510
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
Y R +PL + P + + + GD +V FSR + +++ G H S++YGS+PPE
Sbjct: 511 EYTRDTPLQVEDRPF-TLRDTKRGDALVCFSRKRVLETASILQNNG-HQVSMIYGSMPPE 568
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q RF D E V+VA+DAIGMGLNL I R++F +KFDG R LT EVKQI
Sbjct: 569 TRKKQMQRFIDG--ETTVIVATDAIGMGLNLPIRRVVFLQNEKFDGTRRRRLTSQEVKQI 626
Query: 187 AGRAGRYGSKFPVGEV 202
AGRAGR G + VG+V
Sbjct: 627 AGRAGRKGM-YDVGKV 641
>gi|410456673|ref|ZP_11310531.1| helicase [Bacillus bataviensis LMG 21833]
gi|409927715|gb|EKN64844.1| helicase [Bacillus bataviensis LMG 21833]
Length = 860
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 24/360 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
Y+ VIDE QM+ K RGFS+ +A+ A E+H+ G + ++ ++L D+++
Sbjct: 454 YEVVVIDEAQMITDKDRGFSWYKAITKANAREVHIIGSRNSKTMLLELL--GNADIEIHE 511
Query: 68 YERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
Y R +PL V F +++ GD ++ FSR + +++ G H S++YGS+PP
Sbjct: 512 YSRDTPL---EVEKKEFHIKHVKKGDALICFSRRRVLETASRLQNDG-HSVSMIYGSMPP 567
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
ETR +Q +FN ++ V+V++DAIGMGLNL I RI+F KFDG R LT EVKQ
Sbjct: 568 ETRKKQIEQFNKGRTK--VIVSTDAIGMGLNLPIRRIVFLENDKFDGTRRRLLTSQEVKQ 625
Query: 186 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
IAGRAGR G + VG+V + D+ + LL+ + + + P + + R + D
Sbjct: 626 IAGRAGRKGI-YDVGKVAF--TSDIRKMQNLLLQEDEPVHTFAIAPTNSVFERFQRYYHD 682
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLK-VATVIDQLPLRLHEKYLFCISPVDMNDDI 304
+ L E+ K ++ + + + + +A + L L + Y F P N+
Sbjct: 683 LGTFFELWGKFESPKGTKKATLSEEKSLYQLIAGTEIEARLSLMDLYGFLHLPFSKNESA 742
Query: 305 SSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEE 364
++ T Y+ I+Q RE+ P + K + +L ELE +K + L++ +RL E
Sbjct: 743 LTRQWED--TMYA---IIQGRELPEP----IVKDR-SLEELELSYKAIGLHLLFLYRLGE 792
>gi|68075671|ref|XP_679755.1| ATP-dependent DEAD box helicase [Plasmodium berghei strain ANKA]
gi|56500573|emb|CAH94648.1| ATP-dependent DEAD box helicase, putative [Plasmodium berghei]
Length = 905
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 49/300 (16%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDCA+IDEIQM+ RG+++T L+ + E++LCG V LI+++ +
Sbjct: 263 MTPLNEKYDCAIIDEIQMINNSIRGYAWTNVLMNLKCEEIYLCGSEHIVNLIKELSDILH 322
Query: 61 DDVKVQSYERLSPL-VPLNV-PLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
D V ++ ++RL+ L + NV PLG ++TGDCI++FSR+ I LKK +E K + +
Sbjct: 323 DQVIIKRFKRLNKLKLEENVQPLGD---VKTGDCIISFSRNNIMLLKKKLEKLNKRVF-V 378
Query: 119 VYGSLPPETRTRQATRFN------------------------------------DASSEF 142
+YG+LPPE++ +Q FN + +
Sbjct: 379 IYGTLPPESKKKQIELFNYYCKQIKNDCDNIKLERNNDEQNIKNEIHRAENSNHENHKKE 438
Query: 143 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFP 198
VLVA+D IGMGLN+ I RIIF ++KK+DG +R L V E+ QIAGRAGR+
Sbjct: 439 TVLVATDVIGMGLNIKIRRIIFYSLKKYDGDIIRYLNVSEILQIAGRAGRFDENDSGNSS 498
Query: 199 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 258
G VTC++ ED+ +L K++ E + + G N + Y + DS +++ L N
Sbjct: 499 DGFVTCVNFEDIKIL-KNIFENKNVKKLIG--NNDENYYELHNTNEDSDSNNLIDQHLGN 555
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 227 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 279
AG FPNFD I S++ LY IL+ ++ KL+++YFF N +++ +A
Sbjct: 614 AGYFPNFDTIENLSKILEFEYKAKIELYEILQILIDYLKLNDSYFFLTKNYNQIIFIAKF 673
Query: 280 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 326
+ + + + +++ ISPV++N+ I L F ++S G V E
Sbjct: 674 LKNINIDKNILFIYAISPVNINNVIMINILRTFIMSHSILGYVDFFE 720
>gi|182418042|ref|ZP_02949347.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237665685|ref|ZP_04525673.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182378097|gb|EDT75633.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237658632|gb|EEP56184.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 908
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 199/379 (52%), Gaps = 34/379 (8%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDE QM+ RG+++TRA+ + E+H+C P A+ +I ++++ GD +V +
Sbjct: 486 YDVCVIDEAQMINDNQRGWAWTRAITAALSPEIHICMAPEALNVIIKLIEDCGDTYEVIN 545
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL-CSIVYGSLPPE 126
++R + L+ + +++ GD +V F + L + E K++ SI+YGSLP
Sbjct: 546 HKRDTELIFEDKTFNLDKDVKAGDALVVFGKRKA--LAVSAELLNKNIKTSIIYGSLPYS 603
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q RF + +E V+V +DAIGMG+NL I RI+F +K+DGV LR L E+KQI
Sbjct: 604 TRKKQFERFLNGETE--VIVCTDAIGMGVNLPIKRIVFLETRKYDGVSLRRLKTSEIKQI 661
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPD 245
AGRAGR G + G V S D+ L+ +L EP+P+ + P+ S L D
Sbjct: 662 AGRAGRKGI-YNKGYVAA--SCDINLIRGALRAEPAPIEKCYAGIPD-------SLLEID 711
Query: 246 SSLYGILEHFLENAKLSENYFFANCE--EVLKVATVIDQLPLRLHEKYLFCIS--PVDMN 301
L L+ + + +S +F + ++ + I ++ L + ++ ++ P + N
Sbjct: 712 IDLVDALKTW---SSMSLKGYFEKTDVTRIIYLLNRIKKMELNVSKEDALKMATIPFEEN 768
Query: 302 DDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFR 361
+ ++ YS KG+V LR+ P + ++ L +LES +K LD L++
Sbjct: 769 NKTVYSLWEEYCKMYS-KGVVNLRK---PMLNKNVSSKKELDDLESYYKSLD----LNYS 820
Query: 362 LEESFPDRELAASQKAICS 380
++F L + + ICS
Sbjct: 821 FGKNF---NLMINNRYICS 836
>gi|403234635|ref|ZP_10913221.1| helicase [Bacillus sp. 10403023]
Length = 828
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 146/278 (52%), Gaps = 30/278 (10%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDE QM+ K RGFS+ +A+ A E+H+ A +I Q+L +V+V
Sbjct: 430 YDVIVIDEAQMIADKDRGFSWYKAITNANAKEVHIICSFHAKWMILQLL--GNSNVEVHE 487
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y R PL + L + + GD +V FSR + ++ G+ + S++YGS+PPET
Sbjct: 488 YHRDVPL-EVEPQLFRLNQTRKGDALVCFSRRRVLETASELQRSGRRV-SMIYGSMPPET 545
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R +Q RFN+ E V+VA+DAIGMGLNL I RI+F KFDG R LT EVKQIA
Sbjct: 546 RKKQIQRFNNG--ETTVIVATDAIGMGLNLPIRRIVFLENDKFDGTRRRLLTSQEVKQIA 603
Query: 188 GRAGRYGSKFPVGEVT----------CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GRAGR G + +G+V L+ ED PL ++ + +LE + ++
Sbjct: 604 GRAGRRGI-YDIGKVAFTSDIKTMTRLLEQEDAPLQGFAIAPTNAVLERFQKYSRKMRMF 662
Query: 238 MY-------------SRLHPDSSLYGILEHFLENAKLS 262
Y + L+ + LY ++E + AKLS
Sbjct: 663 FYLWDQFRSPEGTKKASLYEERMLYELVEDTIIEAKLS 700
>gi|359781543|ref|ZP_09284767.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
gi|359370607|gb|EHK71174.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
Length = 797
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 195/393 (49%), Gaps = 21/393 (5%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
++ V+DE+QML RG+++ AL+ L + G P ++ + ++ D ++++
Sbjct: 397 WEVVVVDEVQMLADPQRGWAWVDALVSAHTKRLLMTGPALIEPSLRTLCELCEDRLEIKP 456
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLSP V + + ++ G +V FSR + LK +E G+ + S+VYG+L PE
Sbjct: 457 TKRLSP-VTVARHATTLERLEPGSLLVAFSRRVVLELKGLLEMAGRRV-SVVYGALSPEV 514
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R QA RF + +E ++VA+DA+GMGLNL + F T +KFDGVE R L V EVKQI
Sbjct: 515 RREQARRFREGETE--IMVATDAVGMGLNLPAHTLCFYTDEKFDGVENRPLRVQEVKQIG 572
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPD 245
GRAGR+G GE+T L+ L + + P P+ L + P+ + + S +
Sbjct: 573 GRAGRFGHHAE-GEITALEPHVLRNIKRLFHSPDDPVDLHQFQVRPSLEHLRALSEFMEE 631
Query: 246 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 305
SL F N + + +E+ + +ID + +++F +P+
Sbjct: 632 PSLLRTWLTFNRNINYGDAFVSVLPDELAEWIKLIDLPGIDFQLRWIFACTPI------- 684
Query: 306 SQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA--LRELESIHKVLDLYVWLSFRLE 363
GL A++ +++ LR + + +P+ L LES V++ Y+ LS L
Sbjct: 685 RGGLEGPASSQAQR---WLRSVARGEPVDLPRIPMGTDLAGLESALHVVETYLHLSRSLP 741
Query: 364 ESFPDRELAASQKAICSMLIEEFLERLGWQKPR 396
E FP E + + + I + L R ++PR
Sbjct: 742 ELFPALERGQDHRDLLNDAITQELSRR--RRPR 772
>gi|251771058|gb|EES51642.1| helicase domain protein [Leptospirillum ferrodiazotrophum]
Length = 516
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 198/411 (48%), Gaps = 27/411 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + C VIDE+QM+ + RG ++ R LLG + E+ +CG P ++++ G
Sbjct: 118 MGSTTEEAPCVVIDEVQMMADRERGPAWVRGLLGSPSEEIMVCGTPHVEGALRRLADYAG 177
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++ V+ R +PL + P+ + G +V F+R + L + + RG+ + +I Y
Sbjct: 178 VELDVRYTRRKTPLSVSSAPI-PLDRVPDGSIVVAFTRLDVLSLARILRDRGRPVATI-Y 235
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G++PPE R ++ RF + E V+VA+DA+GMGLN+ +IFST KFDG R L
Sbjct: 236 GAMPPELRRSESRRFR--AGEALVMVATDAVGMGLNVPAEYVIFSTAAKFDGRMDRILEP 293
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFDLIYMY 239
EV+QI GRAGR+G G + +D ++ + PS P+ P++ ++
Sbjct: 294 EEVRQIGGRAGRFGL-HEQGIIAGMDRRTHQIVARQFSHPSIPVNGPFPFVPDYPIVLSA 352
Query: 240 SRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLP--LRLHEKYLFCIS 296
S + ++L +L L + LS+ + + E+ + A I++L L L E++L +
Sbjct: 353 SEVTGSANLEVLLSR-LHASILSDAHLRSGIGPEIRQKAARIERLAPLLPLSERWLLLFA 411
Query: 297 PVDMNDDISSQGL--TQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDL 354
P + + T N + +V EI ++ +E E + L
Sbjct: 412 PENRTTEYEFWRWVGTVAGGNTGRDPVVLAPEI---------RSIQGRQEGEEALARITL 462
Query: 355 YVWLSFRLEESFPDRELAASQKAICSMLIEE---FLERLGWQKPRVKKVTP 402
Y WL+ RL FP+ + A + + ++EE LER G + R + P
Sbjct: 463 YRWLALRLPHRFPEYDRAV---GLYARVLEETRVILEREGRVRRRKGRADP 510
>gi|418292700|ref|ZP_12904631.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064114|gb|EHY76857.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 786
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 184/368 (50%), Gaps = 15/368 (4%)
Query: 24 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 83
RG+++ AL+ +L + G P ++ + ++ D + VQ +RLSP V + +
Sbjct: 413 RGWAWVDALVSAHTPQLMMTGPALIQPSLRTLCELCEDKLVVQRTKRLSP-VEVARHATT 471
Query: 84 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 143
++ G +V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D
Sbjct: 472 LQRLEPGSLLVAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EAD 528
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
++VA+DA+GMGLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T
Sbjct: 529 IMVATDAVGMGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFG-HHNSGEIT 587
Query: 204 CLDSEDLPLLHKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
LD + L + + P +P+ L + P+ D + S L + SL F N
Sbjct: 588 ALDPQTLKSIRRLFNSPDAPVDLSQFQVRPSIDHLAAISELMGEPSLLRAWLTFNRNINY 647
Query: 262 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGI 321
E + +E+ + +ID + L ++ F +P+ D + +Q A + K+ +
Sbjct: 648 GEAFISVLPDELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR-V 703
Query: 322 VQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSM 381
+ I P L + L LES V++ Y+ L+ L E FP+ + + + +
Sbjct: 704 AEGHAIPMPKLL----LGSDLASLESTLHVVETYLHLARSLPEHFPEHDDGEDARKLLND 759
Query: 382 LIEEFLER 389
I L R
Sbjct: 760 AITRELSR 767
>gi|429765880|ref|ZP_19298160.1| helicase protein [Clostridium celatum DSM 1785]
gi|429185733|gb|EKY26707.1| helicase protein [Clostridium celatum DSM 1785]
Length = 912
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 210/439 (47%), Gaps = 67/439 (15%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDE QM+ RG+++TRA++G+ + E+H+C P A +I +++ GD +V
Sbjct: 486 YDVCVIDEAQMIADNQRGWAWTRAIIGVLSPEIHICMAPEAKDIIIKLINDCGDTYEVIE 545
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL-----CSIVYGS 122
++R + L+ + +++ GD +V F + +KA+ + L SI+YGS
Sbjct: 546 HKRDTELIFEDKKFDLNKDVKKGDALVVFGK------RKALAVSAQLLNNNIKTSIIYGS 599
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LP TR +Q RF S E +V+V +DAIGMG+NL I RI+F +K+DGV LR L + E
Sbjct: 600 LPYSTRKKQFERF--LSGETEVIVCTDAIGMGVNLPIKRIVFLETRKYDGVSLRKLNIAE 657
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES-------AGLFPNFDL 235
+KQIAGRAGR G + G V + D L+ +L + +E + L N D+
Sbjct: 658 IKQIAGRAGRRGM-YNKGYVATM--ADSNLIKSALTIETKKIEKCFIGIPDSLLDINIDI 714
Query: 236 I-------YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 288
I M+ + + + + + + L +L + A+ E++LK+AT+
Sbjct: 715 IDALKTWSVMFVKGYYEKTDVTTIIYLLN--RLKKLNIKASKEDLLKMATI--------- 763
Query: 289 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESI 348
P + N+ + + ++ YS G V L++ P + ++ L ELE+
Sbjct: 764 --------PFEENNKVVCELWEEYCKMYS-AGAVNLKK---PVLKKSVSSKKELDELENY 811
Query: 349 HKVLDLYVWLSFRLEESFPDRELAASQK----AICSMLIEEFLE----------RLGWQK 394
+K L+L +R +++ ++ I +L+ L+ +L W
Sbjct: 812 YKSLELTYSFGKNFNMMINNRYISSEKEDTANKINELLLTNLLDHERVCSICGKKLSWDY 871
Query: 395 PRVKKVTPRPKLNSAVVSR 413
P + R +N A R
Sbjct: 872 PSDRCRVCREMINEAKAER 890
>gi|15894065|ref|NP_347414.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337735994|ref|YP_004635441.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384457503|ref|YP_005669923.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15023664|gb|AAK78754.1|AE007593_2 ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325508192|gb|ADZ19828.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336290300|gb|AEI31434.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 585
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 144/234 (61%), Gaps = 12/234 (5%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
D+ YD AVIDEIQM+ RG ++++ALLG+ +E+H+CG A +++ I++ D
Sbjct: 217 VDLKEHYDIAVIDEIQMISDYQRGIAWSKALLGLKCDEIHICGAINARYILETIIKDCED 276
Query: 62 DVKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ +++ Y+R +PL V SF+ +I+ GD +V FS+ + + ++ +RG SI+
Sbjct: 277 EYEIKEYKRA---IPLEVEDESFNYKDIKEGDAVVVFSKKRVLEIAQSYSARGIK-ASII 332
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YG LPPE R Q +F E VLV +DAIGMG+NL I RIIF ++KFDG ++R+LT
Sbjct: 333 YGDLPPEVRKLQYEQF--IKKETKVLVTTDAIGMGVNLPIRRIIFINIRKFDGEQIRELT 390
Query: 180 VPEVKQIAGRAGRYGSKFPVGEV-TCLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
EVKQI+GRAGR G + VG V + D++D + + L E + A + P+
Sbjct: 391 SQEVKQISGRAGRIGI-YDVGYVASAGDTQD--FIKEKLEEEDKSIRRAVIGPS 441
>gi|410460159|ref|ZP_11313842.1| helicase [Bacillus azotoformans LMG 9581]
gi|409927389|gb|EKN64525.1| helicase [Bacillus azotoformans LMG 9581]
Length = 847
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 118/197 (59%), Gaps = 9/197 (4%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
YD VIDE QML K RGFS+ +A+ A E+H+ A +I +L + DV V
Sbjct: 438 YDVVVIDEAQMLADKDRGFSWYKAITKAKAKEVHIICSFNAKSMILDLLGES--DVDVFE 495
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE-SRGKHLCSIVYGSLPPE 126
Y R PL + L ++ + GD +V FSR + L+ A E RGK S++YGS+PPE
Sbjct: 496 YRRDIPL-EVEQHLFRLNDTRKGDALVCFSRRQV--LETASELQRGKRKVSMIYGSMPPE 552
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q RF + E V+VA+DAIGMGLNL I RI+F +KFDG R LT EVKQI
Sbjct: 553 TRKKQMQRF--LNGETTVIVATDAIGMGLNLPIRRIVFLENEKFDGTRRRRLTSQEVKQI 610
Query: 187 AGRAGRYGSKFPVGEVT 203
AGRAGR G + VG+V
Sbjct: 611 AGRAGRKGI-YDVGKVA 626
>gi|297538677|ref|YP_003674446.1| helicase domain-containing protein [Methylotenera versatilis 301]
gi|297258024|gb|ADI29869.1| helicase domain protein [Methylotenera versatilis 301]
Length = 503
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 191/396 (48%), Gaps = 29/396 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ A+IDEIQML RG ++T AL+G+ A+++ +CG A ++ + ++
Sbjct: 99 EVAIIDEIQMLQDGDRGSAWTTALVGVPASQVFICGSTAVTAPCVAAIEAMDETYEITYL 158
Query: 69 ERLSPLVPLNVPL--GSFS------NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
R +PLV + + +S +Q GD I+ FSR + G + SI Y
Sbjct: 159 ARKTPLVLEDESICGKHYSRQKLKPKLQKGDAIIAFSRKDVLTFSARFRQWGFTVASI-Y 217
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R ++ RF + + D+LVA+DAIGMGLNL I R+IFS + KFDGV R L
Sbjct: 218 GALSPEVRRTESERF--CTGKADILVATDAIGMGLNLPIRRVIFSNIHKFDGVASRHLNS 275
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSLLEPSPMLESAGLFPNFDLIYMY 239
EV+QIAGRAGR+G + G ++ ++++L + H + + L + +F I
Sbjct: 276 TEVRQIAGRAGRFGI-YDTGYISVFENDELIHIEHMLSTDDTSDLTKLPVSISFSQIGEI 334
Query: 240 S-RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCIS 296
S +LH ++ H SE + + + A ++D+ + L +K++F +
Sbjct: 335 SHKLHTRKIAEVLIYHQQRTRIHSELFAQTSLSTQIAQAILVDEHAPTMSLKDKFIFVCA 394
Query: 297 PVDMNDDISSQGLTQFATNY---SKKGIV--QLREIFTPGTLQVPKTQAALRELESIHKV 351
P+ ++ F +Y K +V ++R + P ++ L E +
Sbjct: 395 PISLD--------VAFEKDYYLLCLKSVVDSKMRHLPAPPNWLGSESPKHLEAAELLSHN 446
Query: 352 LDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFL 387
L LY WLSF+ +F D + + S IE L
Sbjct: 447 LSLYAWLSFKFPNTFVDGDEVRPYRQRVSRYIESAL 482
>gi|238922272|ref|YP_002935786.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
gi|238873944|gb|ACR73652.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
Length = 543
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
D+ +D VIDE QM+ RG+++T A+LG+ A+ +H+C P A+ +++ ++++ GD
Sbjct: 126 DMSRHFDVCVIDEAQMVADSDRGWAWTEAILGVNADVVHVCMSPNAIHIVKMLIKMCGDT 185
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++R S L+ + +I+ GD +V+FSR + L ++ G + S++YGS
Sbjct: 186 YTDIRHKRNSRLIVEDHDFIFPDDIRDGDALVSFSRRKVLMLATLLKKEG-YKVSVIYGS 244
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
LP R + RF + S ++V +DAIGMG+NL I RIIF+ KKFDG R L + E
Sbjct: 245 LPYSVRKAEVARFLNGESR--IVVCTDAIGMGVNLPIRRIIFTESKKFDGKSKRFLNMSE 302
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLH 214
VKQIAGRAGR G + G V ++ D LLH
Sbjct: 303 VKQIAGRAGRKGM-YDQGYVNSIEDRDQIGELLH 335
>gi|294499021|ref|YP_003562721.1| helicase domain-containing protein [Bacillus megaterium QM B1551]
gi|294348958|gb|ADE69287.1| helicase domain protein [Bacillus megaterium QM B1551]
Length = 869
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 13/239 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDE QM+ + RGFS+ +A+ A ++H+ G + +++++L G ++ Y
Sbjct: 465 DVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIRSMLEEMLD--GVISEIHEY 522
Query: 69 ERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER +PL V L F ++ D ++ FSR + + +E G H S++YGS+PPE
Sbjct: 523 ERD---IPLKVDLRRFKIEQVKPADALIVFSRKKVLQTAAKLEKDG-HKVSVIYGSMPPE 578
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q +F + E +V+V++DAIGMGLNL I RI+ KFDG + R LT E+KQI
Sbjct: 579 TRRKQIEQF--INRETNVIVSTDAIGMGLNLPIRRIVLLENMKFDGQKRRLLTSQELKQI 636
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
AGRAGR G + VGEV ++D + + L + + P D++ + H D
Sbjct: 637 AGRAGRKGL-YNVGEVAF--AKDAKQMRELLFSTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|295704340|ref|YP_003597415.1| helicase domain-containing protein [Bacillus megaterium DSM 319]
gi|294801999|gb|ADF39065.1| helicase domain protein [Bacillus megaterium DSM 319]
Length = 870
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 13/239 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDE QM+ + RGFS+ +A+ A ++H+ G + +++++L G ++ Y
Sbjct: 465 DVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIRSMLEEMLD--GVISEIHEY 522
Query: 69 ERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER +PL V L F ++ D ++ FSR + + +E G H S++YGS+PPE
Sbjct: 523 ERD---IPLKVDLRKFKIEQVKPADALIVFSRKKVLQTAAKLEKDG-HKVSVIYGSMPPE 578
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q +F + E +V+V++DAIGMGLNL I RI+ KFDG + R LT E+KQI
Sbjct: 579 TRRKQIEQF--INRETNVIVSTDAIGMGLNLPIRRIVLLENMKFDGQKRRLLTSQELKQI 636
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
AGRAGR G + VGEV ++D + + L + + P D++ + H D
Sbjct: 637 AGRAGRKGL-YNVGEVAF--AKDAKQMRELLFLTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|384047152|ref|YP_005495169.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345444843|gb|AEN89860.1| putative ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
Length = 870
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 13/239 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDE QM+ + RGFS+ +A+ A ++H+ G + +++++L G ++ Y
Sbjct: 465 DVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIRSMLEEMLD--GVISEIYEY 522
Query: 69 ERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER +PL V L F ++ D ++ FSR + + +E G H S++YGS+PPE
Sbjct: 523 ERD---IPLKVDLRKFKIEQVKPADALIVFSRKKVLQTAAKLEKDG-HKVSVIYGSMPPE 578
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR +Q +F E +V+V++DAIGMGLNL I RI+ KFDG + R LT E+KQI
Sbjct: 579 TRRKQIEQF--IHRETNVIVSTDAIGMGLNLPIRRIVLLENMKFDGQKRRLLTSQELKQI 636
Query: 187 AGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 245
AGRAGR G + VGEV ++D + + L + + P D++ + H D
Sbjct: 637 AGRAGRKGL-YNVGEVAF--AKDAKQMRELLFSTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|294886391|ref|XP_002771694.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239875416|gb|EER03510.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 219
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKV 65
+YD VIDE+Q++G + RG ++TRA+L + A E+HLCGD A L++ +L +DV V
Sbjct: 64 EYDVGVIDEVQLVGDRERGGAWTRAILALPAREIHLCGDGRATELVETLLGTYRPNDVVV 123
Query: 66 QS--YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ Y RLSPL +GS+ +++ GDC+V FSR I R+K IE + +VYG+L
Sbjct: 124 RHKPYSRLSPLFLSGKAIGSYRSLRRGDCVVVFSRWDIMRVKADIERSTRWRVCVVYGTL 183
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 161
PPETR Q FN EFDVLVASD IG+GLN NI R
Sbjct: 184 PPETRRDQINSFN--RQEFDVLVASDCIGLGLNFNIRR 219
>gi|125545706|gb|EAY91845.1| hypothetical protein OsI_13490 [Oryza sativa Indica Group]
Length = 155
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%), Gaps = 15/105 (14%)
Query: 292 LFCISPVDMNDDISSQGL---------------TQFATNYSKKGIVQLREIFTPGTLQVP 336
+F ++PVD+ DDIS++GL QFA NY+KKGIV+L+EIFTPGTLQVP
Sbjct: 42 VFDLNPVDIRDDISTKGLIQANIFETISLIFFEMQFAENYAKKGIVRLKEIFTPGTLQVP 101
Query: 337 KTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSM 381
K+ L+ELESIHKVL+LYVWLSFRLE+S+PDRELAASQK+ICSM
Sbjct: 102 KSHNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKSICSM 146
>gi|373859839|ref|ZP_09602561.1| helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450424|gb|EHP23913.1| helicase domain protein [Bacillus sp. 1NLA3E]
Length = 858
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 13/198 (6%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ 66
++ VIDE QM+ K RGFS+ +A+ A E+H+ G + + + +LQ+ G+ ++++
Sbjct: 453 FEVIVIDEAQMIADKDRGFSWYKAISKANAKEVHIIG---SRNIKEMLLQLLGESEIEIY 509
Query: 67 SYERLSPLVPLNVPLGSFSNIQT--GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
Y R +PL V F+ + + GD +V FSR + ++++G + S++YGS+P
Sbjct: 510 EYSRE---IPLEVEQKEFNLVHSKKGDALVCFSRRKVLETASKLQTKGISV-SMIYGSMP 565
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
PETR +Q RF D E +V++DAIGMGLNL I RI+F +KFDG R LT EVK
Sbjct: 566 PETRKKQIQRFIDG--ETTRIVSTDAIGMGLNLPIRRIVFLENEKFDGTRRRRLTSQEVK 623
Query: 185 QIAGRAGRYGSKFPVGEV 202
QIAGRAGR G + +G+V
Sbjct: 624 QIAGRAGRKGL-YNIGKV 640
>gi|402580579|gb|EJW74529.1| hypothetical protein WUBG_14562, partial [Wuchereria bancrofti]
Length = 213
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 114/187 (60%), Gaps = 5/187 (2%)
Query: 117 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 176
+++YG+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI RIIF +F E +
Sbjct: 17 TVIYGALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFV---QFPFGEHQ 73
Query: 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
V Q+AGRAGR+ S + G VT L D+ LL + EP +E+AG+ P + +
Sbjct: 74 --ANYHVMQVAGRAGRFQSAYQKGWVTTLRPADMRLLEAFMKEPIKPIETAGIAPTSEQL 131
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 296
+S P +S I++ F+ + LS+ + + E+ K+A +ID +PL + KY FC +
Sbjct: 132 ETFSYHLPHASFLSIIDMFISISSLSKKFHLCDIEQFRKLAELIDDVPLSIKVKYAFCTA 191
Query: 297 PVDMNDD 303
PVDM+ D
Sbjct: 192 PVDMDVD 198
>gi|255600329|ref|XP_002537436.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223516363|gb|EEF24947.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 427
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML RG ++T AL+G+ A ++ +CG + ++L + +
Sbjct: 103 EVAVIDEIQMLMDPDRGSAWTAALVGVPAKQVFICGANSVTESCTRVLDALNEPYTLTHL 162
Query: 69 ERLSPLVPLNVPLGS--------FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+R++PL+ + + +Q GD I+ FSR + L I G + +I Y
Sbjct: 163 QRMTPLLIEDHSICGARYHAAKLHKALQPGDAIIAFSRKDVLTLAARIRQWGLSVATI-Y 221
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L PE R ++ RF AS E +LVA+DAIGMGLNL I R+IF+ + KFDGV R L
Sbjct: 222 GALSPEVRRGESARF--ASGEAQILVATDAIGMGLNLPIRRVIFANIHKFDGVAPRPLNA 279
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSED 209
E++QIAGRAGR+G + G VT L+ ++
Sbjct: 280 TEMRQIAGRAGRHG-LYDTGYVTVLEDDE 307
>gi|402579073|gb|EJW73026.1| hypothetical protein WUBG_16067, partial [Wuchereria bancrofti]
Length = 227
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 14/163 (8%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + + AVIDEIQML ++RG+++TRALLGI A E+HLCG+ AAV +++ +L G
Sbjct: 71 MVPVDVNVEVAVIDEIQMLRDQSRGWAWTRALLGIAAKEIHLCGEEAAVDIVRSLLDPIG 130
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V YER +PL GDC+V FS ++ + K++ G +++Y
Sbjct: 131 EHVEVHLYERKTPLT-------------DGDCLVCFSVSMLFSVAKSLTKLGVQP-TVIY 176
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 163
G+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI R +
Sbjct: 177 GALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRFV 219
>gi|385303195|gb|EIF47285.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 225
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 112/184 (60%), Gaps = 5/184 (2%)
Query: 104 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 163
+K IE + C+++YG+LPPETR+++A RFND +D++VASDAIGMGLNL I+R+I
Sbjct: 1 MKIQIERQTNFKCAVIYGALPPETRSQEAQRFNDGI--YDIVVASDAIGMGLNLKINRVI 58
Query: 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPSP 222
F+T +KF+G + LT +KQI GRAGRYG VG +T + ++L + K +
Sbjct: 59 FTTTQKFNGSKNVSLTSSNIKQIGGRAGRYGIGGESVGHITAISRDELENVSKGVEGDIK 118
Query: 223 MLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 281
+ A L+P DL I YS P+++L I F E+ + +N A E KV ++ D
Sbjct: 119 YINKAILWPPDDLWIKYYSMFAPETNLVTIYRRFEEDLNI-KNAKTAERSEDFKVQSLKD 177
Query: 282 QLPL 285
+L +
Sbjct: 178 KLMM 181
>gi|399218229|emb|CCF75116.1| unnamed protein product [Babesia microti strain RI]
Length = 666
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 186/400 (46%), Gaps = 37/400 (9%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRAL--LGICA--------------------- 37
M + +D +IDE+QM+ ++RGF++ RA L +C
Sbjct: 207 MLPIGKSFDVGIIDEMQMVADESRGFAWCRAFFALQVCVILLCDCIFLYLCMSCMYLLNG 266
Query: 38 --NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT 95
N L LC A+P+ + + ++ Y RL+ V + + +++ DC+V+
Sbjct: 267 LINALRLCIMFCALPIYTALANQCNETAQLIEYNRLTQPVKICEAPITLDDLKPRDCLVS 326
Query: 96 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 155
FS +++ K +E GK C I+YGSLPPETR Q RFN +L+A+D IGMGL
Sbjct: 327 FSPITLFQYKFKLECLGKKSC-ILYGSLPPETRLLQIERFNRGGH---ILLATDVIGMGL 382
Query: 156 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS---EDLPL 212
NL+I R+I + ++K R L+ E+ QI RAGR+G E L ED
Sbjct: 383 NLDIQRVILANLEKSIDGNNRPLSPLELSQIVNRAGRFGISNSAAECGVLKKQLLEDFKR 442
Query: 213 LHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG---ILEHFLENAKLSENYFFAN 269
+ S ++ ++ L PN + ++ S + I++ F +++ Y +
Sbjct: 443 ILGSKIDNLCDIQMT-LEPNQLITFIESIKSTQNDTISPAVIVKTFKNLTTVTKPYNLSK 501
Query: 270 CEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 329
+++ +++ ++ + L + +P+D N ++ L FA+ +S + L ++
Sbjct: 502 LDKMNRLSFCLEGINLTTKLTVEYLNAPLDTNHQMNLASLRLFASRHSDNLKIHLDDLLD 561
Query: 330 PGTLQVP-KTQAALRELESIHKVLDLYVWLSFRLEESFPD 368
+ A L+ E ++ VLD Y ++SFR ++ D
Sbjct: 562 IDKFRSSIDNIAKLKLYELVYSVLDYYQYMSFRYPNTYVD 601
>gi|71083132|ref|YP_265851.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062245|gb|AAZ21248.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
Length = 826
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 114/219 (52%), Gaps = 11/219 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D IDEIQM RG FT LL + +L + + I+ I+ +D + +
Sbjct: 88 DFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMFMGSST---IKNIVNKLNEDTEFINR 144
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L V S I I+ FS +Y + + + R K +IV GSL P+TR
Sbjct: 145 ERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAIAELVR-RQKGGAAIVMGSLSPKTR 201
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAG
Sbjct: 202 NAQVELY--QSGDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAG 259
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
RAGRY GS G+ + +E++ LL E ML
Sbjct: 260 RAGRYLNDGSFGVTGDCKDISAEEVELLENHKFEEIRML 298
>gi|91762441|ref|ZP_01264406.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718243|gb|EAS84893.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 826
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 115/219 (52%), Gaps = 11/219 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D IDEIQM RG FT LL + +L + + I++I+ +D + +
Sbjct: 88 DFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMFMGSST---IKKIVNKLNEDTEFINR 144
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L V S I I+ FS +Y + + + R K +IV GSL P+TR
Sbjct: 145 ERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAIAELVR-RQKGGAAIVMGSLSPKTR 201
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAG
Sbjct: 202 NAQVELY--QSGDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAG 259
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
RAGRY G+ G+ + +E++ LL E ML
Sbjct: 260 RAGRYLNDGNFGVTGDCKDISAEEVELLENHKFEEIRML 298
>gi|149688698|gb|ABR27760.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688700|gb|ABR27761.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688702|gb|ABR27762.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688704|gb|ABR27763.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688706|gb|ABR27764.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688708|gb|ABR27765.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688710|gb|ABR27766.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D IDEIQM RG FT LL + +L + I+ I+ +D + +
Sbjct: 46 DFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMF---MGSSTIKNIVNKLNEDTEFINR 102
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L V S I I+ FS +Y + + + R K +IV GSL P+TR
Sbjct: 103 ERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAIAELVR-RQKGGAAIVMGSLSPKTR 159
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAG
Sbjct: 160 NAQVELY--QSGDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAG 217
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
RAGRY GS G+ + +E++ LL E ML
Sbjct: 218 RAGRYLNDGSFGVTGDCKDISAEEVELLENHKFEEIRML 256
>gi|149688696|gb|ABR27759.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D IDEIQM RG FT LL + +L + I+ I+ +D + +
Sbjct: 46 DFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMF---MGSSTIKNIVNKLNEDTEFINR 102
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L V S I I+ FS +Y + + + R K +IV GSL P+TR
Sbjct: 103 ERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAIAELVR-RQKGGAAIVMGSLSPKTR 159
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAG
Sbjct: 160 NAQVELY--QSGDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAG 217
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
RAGRY GS G+ + +E++ LL E ML
Sbjct: 218 RAGRYLNDGSFGVTGDCKDISAEEVELLESHKFEEIRML 256
>gi|149688694|gb|ABR27758.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 283
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 114/219 (52%), Gaps = 11/219 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D IDEIQM RG FT LL + +L + I++I+ +D + +
Sbjct: 46 DFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMF---MGSSTIKKIVNKLNEDTEFINR 102
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L V S I I+ FS +Y + + + R K +IV GSL P+TR
Sbjct: 103 ERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAIAELVR-RQKGGAAIVMGSLSPKTR 159
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAG
Sbjct: 160 NAQVELY--QSGDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAG 217
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
RAGRY G+ G+ + +E++ LL E ML
Sbjct: 218 RAGRYLNDGNFGVTGDCKDISAEEVELLENHKFEEIRML 256
>gi|406706852|ref|YP_006757205.1| helicase family protein [alpha proteobacterium HIMB5]
gi|406652628|gb|AFS48028.1| helicase family protein [alpha proteobacterium HIMB5]
Length = 827
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 112/214 (52%), Gaps = 11/214 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +DEIQM RG FT LL + +L + I+ I+ DD++ +
Sbjct: 88 DFVGVDEIQMCADHERGHIFTDRLLNMRGEKLTML---MGSNTIKNIISNLDDDIEFINR 144
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ERLS L S I I+ FS +Y + + I R K ++V GSL P+TR
Sbjct: 145 ERLSKLTY--AGHKKISRINRKTAIIAFSAEEVYAIAELIR-RQKGGAAVVMGSLSPKTR 201
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L++ E+ QIAG
Sbjct: 202 NAQVELY--QSGDVDFLVATDAIGMGINMDLDYVYFSNLKKFDGKKLRKLSLSEIGQIAG 259
Query: 189 RAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 219
RAGRY GS GE + +E++ L+ E
Sbjct: 260 RAGRYLNNGSFGITGECKEISAEEVDLIENHKFE 293
>gi|254456336|ref|ZP_05069765.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
gi|207083338|gb|EDZ60764.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
Length = 826
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Query: 13 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 72
+DEIQM RG FT LL + +L + I+ I+ DVK + RLS
Sbjct: 92 VDEIQMCADHERGHIFTDRLLNMRGEKLTML---MGSNTIKNIISKLDADVKFINRNRLS 148
Query: 73 PLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQA 132
L S I I+ FS +Y + + I R K +IV GSL P+TR Q
Sbjct: 149 KLTY--TGHKKISRINRKTAIIAFSAEEVYAIAELIR-RQKGGAAIVMGSLSPKTRNAQV 205
Query: 133 TRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 192
+ S + D LVA+DAIGMG+N+++ + FS +KKFDG +LR L + E+ QIAGRAGR
Sbjct: 206 ELY--QSGDVDFLVATDAIGMGINMDLDHVFFSNLKKFDGKKLRKLNLSEIGQIAGRAGR 263
Query: 193 Y---GSKFPVGEVTCLDSEDLPLLHKSLLE 219
Y G+ G+ + SED+ LL E
Sbjct: 264 YLNDGNFGITGDCKEITSEDVELLENHKFE 293
>gi|347529788|ref|YP_004836536.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138470|dbj|BAK68079.1| putative helicase [Sphingobium sp. SYK-6]
Length = 916
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
+ D+ +DEIQ+ RG FT R L E L G + PL++ +L
Sbjct: 92 AMRDFAFVAVDEIQLAADPERGHVFTDRMLHARGREETMLLGSASMAPLVRSLLP----R 147
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
++ S R S L S + IV FS +YR+ + + R + ++V G+
Sbjct: 148 AEIVSRPRFSTLRYAGA--AKLSRLPRRSAIVAFSVEEVYRVAELLR-RHRGGAAVVMGA 204
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q F + E D LVA+DAIGMGLNLN+ + F++++KFDG R LTV E
Sbjct: 205 LSPATRNAQVAMFE--AGEVDYLVATDAIGMGLNLNVDHVAFASLRKFDGQRTRRLTVAE 262
Query: 183 VKQIAGRAGRYGSKFPVGEVTCLDS 207
+ QIAGRAGR+ G+V LD
Sbjct: 263 MAQIAGRAGRHQRDGTFGDVGALDG 287
>gi|338707936|ref|YP_004662137.1| helicase domain-containing protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294740|gb|AEI37847.1| helicase domain protein [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 926
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 39/262 (14%)
Query: 7 DYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVK 64
D+ A +DE+Q LGC + RG FT LL + E+ + G A PL+++++ ++
Sbjct: 90 DFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREVTMFLGSDALRPLLRRLI----PGIE 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ S R S L P S + IV FS +Y + + R + ++V G+L
Sbjct: 145 IVSRPRFSTL-SYTGP-AKLSRLPPRSAIVAFSAEEVYATAEMLR-RLRGGAAVVMGALS 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E D LVA+DAIGMGLN++++ + F+++ KFDG +LR LT+ E+
Sbjct: 202 PRTRNAQVEMFQ--AGEVDYLVATDAIGMGLNMDVTHVAFASLSKFDGRQLRRLTIAEMA 259
Query: 185 QIAGRAGRY---GS----KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
QIAGRAGR+ GS ++P GE T L E++ + + P L Y
Sbjct: 260 QIAGRAGRFQRNGSFGVLQWP-GETTALREEEVSAIEEHRFPP--------------LQY 304
Query: 238 MYSR-LHPDSS----LYGILEH 254
+Y R PD+S L LEH
Sbjct: 305 LYWRDGQPDTSNIDNLIASLEH 326
>gi|341613821|ref|ZP_08700690.1| ATP-dependent helicase [Citromicrobium sp. JLT1363]
Length = 879
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ + RG FT LL E L G A PLIQ ++ V++ R
Sbjct: 92 AIDEVQLAADRERGHVFTDRLLNARGREETMLLGSATAAPLIQSLIP----HVELTERPR 147
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L S + +V FS +Y + + + R + ++V G+L PETR R
Sbjct: 148 FSTLAHGGAK--KLSRLPKRSAVVAFSSEQVYAIAEMLR-RQRGGAAVVMGALSPETRNR 204
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D +VA+DAIGMGLNL+++ + F+++ KFDGV+ R LT E+ QIAGRA
Sbjct: 205 QVELFQN--GEVDYIVATDAIGMGLNLDVTHVAFASLAKFDGVKRRRLTPSEMAQIAGRA 262
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G + + +D
Sbjct: 263 GRHHRDGSFGALVGMGGQD 281
>gi|238567947|ref|XP_002386345.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
gi|215438015|gb|EEB87275.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
Length = 115
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQ 66
+D AVIDEIQM+G +RG+++T A+LGICA E+HLCG+ AVP+IQ +L+ T D ++++
Sbjct: 8 FDIAVIDEIQMIGDSSRGYAWTNAVLGICAPEIHLCGEETAVPVIQALLKGNTNDTLEIR 67
Query: 67 SYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESR 111
YERLSPL L G +N++ GDCIV FSR I++ KKA+ +
Sbjct: 68 RYERLSPLTVSTESLQGELANVKKGDCIVGFSRRGIFKNKKAVRKK 113
>gi|354594358|ref|ZP_09012397.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
gi|353672034|gb|EHD13734.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
Length = 846
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL N E G P+++Q++ ++++ S
Sbjct: 93 DFVAIDEIQLCADPDRGHIFTDRLLHCRGNIETMFLGADTITPILKQLI----PNIEIDS 148
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L F+ + IV FS + +Y + + I+ R C+IV G L P T
Sbjct: 149 RPRLSNLT--YTGFDKFTKLPPRSAIVAFSANEVYAIAEFIKRRHGG-CAIVMGRLSPRT 205
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLN+N++ + F+++ K+DG +LR+L E+ QIA
Sbjct: 206 RNAQMELYQN--KEVDYLVATDAIGMGLNMNVNHVAFASLSKYDGRQLRNLYPSEIAQIA 263
Query: 188 GRAGR 192
GRAGR
Sbjct: 264 GRAGR 268
>gi|401408093|ref|XP_003883495.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
gi|325117912|emb|CBZ53463.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
Length = 1735
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+ CAV+DE Q++ RG ++T A+LG+ A ELH+C + A PL++++ + GD V
Sbjct: 712 FACAVLDEAQLVASAQRGDAWTNAILGLQAEELHVCCEERATPLLEKLAKACGDSFAVHV 771
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
Y RLSP+ + P+ + + +TGDC++ F+R + RLK+ +E G +C+ VYG LPP
Sbjct: 772 YRRLSPIRVDDGPVETLEDFRTGDCLLCFTRLDVLRLKRKLERLGFQVCA-VYGHLPPAI 830
Query: 128 RTRQATRFN 136
+ RQA +FN
Sbjct: 831 KQRQARKFN 839
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 139 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 198
+S VL+++DA+GMGLNL I R++F + KF G R LTV E++Q+ GRAGR G F
Sbjct: 956 ASRKTVLISTDAVGMGLNLEIRRVVFWRLHKFSGTAKRPLTVAELRQLGGRAGRRGRLFG 1015
Query: 199 V--GEVTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNF--------------------- 233
G VTC+ ED L ++ SP+ L A L P+
Sbjct: 1016 EEGGRVTCIAGEDFRRLKEAFDGSSPLAPLTKAALLPSLAQLLAFCDELRRGGVFGESRP 1075
Query: 234 -DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEK 290
D+ S H L+ F + A + ++F +L V + LPL +
Sbjct: 1076 TDMASGVSSTHVGKFYSEALQLFCDLASIDAHFFVPRHKLNRMLTVLHALSDLPLSRQQL 1135
Query: 291 YLFCISPVDMN 301
+ F ++P+ +
Sbjct: 1136 FTFALAPLPLT 1146
>gi|86171475|ref|XP_966219.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
gi|46361185|emb|CAG25049.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
Length = 1137
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +YDCA++DEIQM+ ++RG ++T L+ + + +++LCG + LI+ + +
Sbjct: 418 MTPLNKEYDCAIVDEIQMINNESRGHAWTNVLMNLNSKDIYLCGSEYIIDLIKNLADILN 477
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + ++ +ERL L L + ++QTGDCI+TFSR+ I LK+ +E K + ++Y
Sbjct: 478 DKLIIKKFERLGSL-HLQEYNTTLEDVQTGDCIITFSRNNIMLLKRILEKYNKRVF-VIY 535
Query: 121 GSLPPETRTRQATRFND 137
GSLPP+++ +Q FN+
Sbjct: 536 GSLPPDSKKKQINMFNE 552
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---SKFPVG 200
+L+A+D IGMGLN+NI RIIF ++KK+DG LR LT+ E QIAGRAGR+ + +G
Sbjct: 642 ILIATDVIGMGLNINIKRIIFYSLKKYDGDILRYLTMSEFLQIAGRAGRFNPSCTNKSIG 701
Query: 201 EVTCLDSEDLPLL 213
+TC+ +D+ +L
Sbjct: 702 YITCVHLDDINIL 714
>gi|149922153|ref|ZP_01910592.1| putative helicase [Plesiocystis pacifica SIR-1]
gi|149816997|gb|EDM76481.1| putative helicase [Plesiocystis pacifica SIR-1]
Length = 814
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 15/204 (7%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDD 62
V + D +DEIQ+ G + RG FT LL E G + P++++++ T D
Sbjct: 80 VSREVDFVAVDEIQLAGHRQRGHVFTDRLLHARGRLETWFMGSESVRPILEELVP-TAD- 137
Query: 63 VKVQSYERLSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
V ++ RLS L + N+ LG+ +V FS +Y + + + R + ++V G
Sbjct: 138 --VHTHPRLSQLRGIGNLSLGALPPRT---AVVAFSAEEVYAIAERLRQR-RGGAAVVLG 191
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
+L P TR Q + S E D +VA+DAIGMGLN+++ + F+ ++KFDGVE+R+L
Sbjct: 192 ALSPRTRNAQVALYQ--SGEVDYMVATDAIGMGLNMDVDTVAFAGLRKFDGVEVRELEPG 249
Query: 182 EVKQIAGRAGRYGSKFPVGEVTCL 205
E+ QIAGRAGR + G+ CL
Sbjct: 250 ELAQIAGRAGRAHND---GQFCCL 270
>gi|384411707|ref|YP_005621072.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932081|gb|AEH62621.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 943
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 7 DYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVK 64
D+ A +DE+Q LGC + RG FT LL + E + G A PL+++++ ++
Sbjct: 90 DFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLGSDALRPLLRRLIP----GIE 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ S R S L + P S + IV FS +Y + + R + ++V G+L
Sbjct: 145 IVSRPRFSTL-SYSGPT-KLSRLPPRSAIVAFSAEEVYATAEMLR-RLRGGAAVVMGALS 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E + LVA+DAIGMGLN++++ + F+++ KFDG ++R LT+PE+
Sbjct: 202 PRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAFASLSKFDGRQVRRLTIPEMA 259
Query: 185 QIAGRAGRY 193
QIAGRAGRY
Sbjct: 260 QIAGRAGRY 268
>gi|302384117|ref|YP_003819940.1| helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302194745|gb|ADL02317.1| helicase domain protein [Brevundimonas subvibrioides ATCC 15264]
Length = 826
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT LL E G PL+++++ DV++ + ER
Sbjct: 98 AIDEIQLAADPERGHVFTSRLLHARGRFETMFLGAATMAPLMRRLIP----DVEIVTRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V GSL P TR
Sbjct: 154 LSQLTYAGSK--KLTRLPRRSAIVAFSTEQVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S E D LVA+DAIGMGLN+++ + F+ M+KFDG R L E+ QIAGRA
Sbjct: 211 QVALFQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGMRKFDGRRTRWLHAHEIAQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GR+ G+ GE LD + + + + +P +E +FD +
Sbjct: 269 GRHIRDGTFGVTGEAEELDEDLVEQVVEHRFDPIQAIEWRNARLDFDTL 317
>gi|40062702|gb|AAR37615.1| ATP-dependent helicase, putative [uncultured marine bacterium 314]
Length = 830
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 13/215 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQM RG FT LL + ++L + G +I ++ D+V+ S
Sbjct: 90 DFVAIDEIQMCADHERGHIFTDRLLNLRGDKLTMFLGSHTMKHVIASLI----DNVEFVS 145
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L S + ++ FS IY L + + R K +++ GSL P+T
Sbjct: 146 RERYSKLTYSGYK--KISRLSPKTAVIAFSIDEIYALAELVR-RQKGGAAVIMGSLSPKT 202
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + ++ F LVA+DAIGMG+N++I + FS +KKFDG + R L + E+ QIA
Sbjct: 203 RNSQVELYQSGAANF--LVATDAIGMGINMDIDNVSFSNLKKFDGKKTRRLNLSEISQIA 260
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 219
GRAGR+ G+ G+ L + ++ L K L+
Sbjct: 261 GRAGRHINDGNFGITGQCESLSANEIERLEKHELD 295
>gi|260753232|ref|YP_003226125.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552595|gb|ACV75541.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 943
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 7 DYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVK 64
D+ A +DE+Q LGC + RG FT LL + E + G A PL+++++ ++
Sbjct: 90 DFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLGSDALRPLLRRLIP----GIE 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ S R S L + P S + +V FS +Y + + R + ++V G+L
Sbjct: 145 IVSRPRFSTL-SYSGPT-KLSRLPPRSAVVAFSAEEVYATAEMLR-RLRGGAAVVMGALS 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E + LVA+DAIGMGLN++++ + F+++ KFDG ++R LT+PE+
Sbjct: 202 PRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAFASLSKFDGRQVRRLTIPEMA 259
Query: 185 QIAGRAGRY 193
QIAGRAGRY
Sbjct: 260 QIAGRAGRY 268
>gi|56551115|ref|YP_161954.1| helicase [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542689|gb|AAV88843.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 943
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 7 DYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVK 64
D+ A +DE+Q LGC + RG FT LL + E + G A PL+++++ ++
Sbjct: 90 DFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLGSDALRPLLRRLIP----GIE 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ S R S L + P S + +V FS +Y + + R + ++V G+L
Sbjct: 145 IVSRPRFSTL-SYSGPT-KLSRLPPRSAVVAFSAEEVYATAEMLR-RLRGGAAVVMGALS 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E + LVA+DAIGMGLN++++ + F+++ KFDG ++R LT+PE+
Sbjct: 202 PRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAFASLSKFDGRQVRRLTIPEMA 259
Query: 185 QIAGRAGRY 193
QIAGRAGRY
Sbjct: 260 QIAGRAGRY 268
>gi|397676869|ref|YP_006518407.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397558|gb|AFN56885.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 943
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 7 DYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVK 64
D+ A +DE+Q LGC + RG FT LL + E + G A PL+++++ ++
Sbjct: 90 DFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLGSDALRPLLRRLIP----GIE 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ S R S L + P S + +V FS +Y + + R + ++V G+L
Sbjct: 145 IVSRPRFSTL-SYSGPT-KLSRLPPRSAVVAFSAEEVYATAEMLR-RLRGGAAVVMGALS 201
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E + LVA+DAIGMGLN++++ + F+++ KFDG ++R LT+PE+
Sbjct: 202 PRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAFASLTKFDGRQVRRLTIPEMA 259
Query: 185 QIAGRAGRY 193
QIAGRAGRY
Sbjct: 260 QIAGRAGRY 268
>gi|197104176|ref|YP_002129553.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
gi|196477596|gb|ACG77124.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
Length = 850
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL-GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL A E L G PL++++L ++Q+ ER
Sbjct: 98 AVDEIQLCADPERGHVFTHRLLHARGARETMLLGAGTMAPLVRRLL----PHAEIQTRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + +V FS +Y + + I R + ++V GSL P TR
Sbjct: 154 LSALTYAGPK--KLTRLPRRSAVVAFSADQVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGQRARLLHPQEIGQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
GR+ G+ GE +D++ + + EP
Sbjct: 269 GRFQKNGTFGVTGEAEDMDADLIEAVENHHFEP 301
>gi|254473008|ref|ZP_05086406.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
gi|211957729|gb|EEA92931.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
Length = 981
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKV 65
D D IDE+Q+ G RG FT +L + E L G PL+++++ + V
Sbjct: 95 DVDFVAIDEVQLAGDLERGHVFTDRILNLRGREETLLLGSSTIRPLLEKLMP----GINV 150
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ R+S L + + IV FS +Y + + I R + ++V GSL P
Sbjct: 151 ITRPRMSILTYAGSK--KITRLPRRSAIVAFSSDEVYAIAELIR-RQRGGAAVVLGSLSP 207
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + + D L+A+DA+GMGLNL++ I F+ +KFDG + R LT E Q
Sbjct: 208 RTRNAQVDLFQNG--DVDWLIATDAVGMGLNLDVDHIAFAGHRKFDGYQYRQLTPAETGQ 265
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
IAGRAGR+ G+ G V D E + L EP +L+ PN D
Sbjct: 266 IAGRAGRHLRDGTFGVTGRVPGFDEELVHQLESHEFEPLKVLQWRN--PNLDF 316
>gi|374333208|ref|YP_005083392.1| helicase domain-containing protein [Pseudovibrio sp. FO-BEG1]
gi|359345996|gb|AEV39370.1| helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 935
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D D IDE+Q+ G RG FT +L + E L G PL+++++ + V
Sbjct: 62 DVDFVAIDEVQLAGDLERGHVFTDRILNLRGREETLLLGSSTIRPLLEKLMP----GINV 117
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ R+S L + + IV FS +Y + + I R + ++V GSL P
Sbjct: 118 ITRPRMSILTYAGSK--KITRLPRRSAIVAFSSDEVYAIAELIR-RQRGGAAVVLGSLSP 174
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + + D L+A+DA+GMGLNL++ I F+ +KFDG + R LT E Q
Sbjct: 175 RTRNAQVDLFQNG--DVDWLIATDAVGMGLNLDVDHIAFAGHRKFDGYQYRQLTPAETGQ 232
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
IAGRAGR+ G+ G V D E + L EP +L+ PN D
Sbjct: 233 IAGRAGRHLRDGTFGVTGRVPGFDEELVHQLESHEFEPLKVLQWRN--PNLDF 283
>gi|162456000|ref|YP_001618367.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
gi|161166582|emb|CAN97887.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
Length = 778
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 10/204 (4%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ D IDEIQ+ RG FT R LL E G PL+ +++ +
Sbjct: 87 EVDFLAIDEIQLAAHDQRGHVFTERLLLSRGRRETWFLGADTMRPLMAELVPTA----SI 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L G S + +V FS +Y + + + ++ + ++V G+L P
Sbjct: 143 VQHPRLSRLASAGA--GKLSRLPPRSAVVAFSTPQVYEIAERLRAQ-RGGAAVVLGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S E D LVA+DAIGMGLNL++ + F+ ++KFDG +RDL E+ Q
Sbjct: 200 RTRNAQVALFQ--SGEVDYLVATDAIGMGLNLDVRHVAFAALRKFDGRAVRDLDPAELAQ 257
Query: 186 IAGRAGRYGSKFPVGEVTCLDSED 209
IAGRAGR+ + G V L D
Sbjct: 258 IAGRAGRHLADGTFGTVAPLSLPD 281
>gi|347758499|ref|YP_004866061.1| helicase domain-containing protein [Micavibrio aeruginosavorus
ARL-13]
gi|347591017|gb|AEP10059.1| helicase conserved C-terminal domain protein [Micavibrio
aeruginosavorus ARL-13]
Length = 978
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 17/223 (7%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVK 64
+D +DEIQ+ G RGF FT LL GI E G PL+Q ++ +++
Sbjct: 120 FDFLAVDEIQLCGDPERGFIFTDRLLRSRGIV--ETMFMGAETIRPLMQALIP----NIE 173
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+S RLS L + + +V FS +Y I R + ++V G+L
Sbjct: 174 FESRARLSQLTYRGYK--KLTRLPKRTAVVAFSVDDVYANADLIR-RHRGGTAVVLGALS 230
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR +Q + S E D LVA+DAIGMGLN++I + + +KFDG +R L E+
Sbjct: 231 PRTRNKQVDMYQ--SGEVDFLVATDAIGMGLNMDIHHVALAATRKFDGAHIRSLDKAEIA 288
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 224
QIAGRAGR+ G+ G V LD + + + + +P P +
Sbjct: 289 QIAGRAGRHVRDGTFGVTGPVPGLDPDMVEAIEHHIFDPLPFI 331
>gi|296284814|ref|ZP_06862812.1| ATP-dependent helicase [Citromicrobium bathyomarinum JL354]
Length = 873
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ + RG FT LL E L G A P+I+ ++ ++ R
Sbjct: 92 ALDEVQLAADRERGHVFTDRLLNARGREETMLLGSSTAAPVIKSLIP----HAELIERPR 147
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L S + +V FS +Y + + + R + ++V G+L PETR R
Sbjct: 148 FSTLTHGGAK--KLSRLPKRSAVVAFSSDQVYAIAEMLR-RHRGGAAVVMGALSPETRNR 204
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D +VA+DAIGMGLNL+++ + F+++ KFDGV+ R LT E+ QIAGRA
Sbjct: 205 QVELFQN--GEVDYIVATDAIGMGLNLDVTHVAFASLAKFDGVKRRRLTPAEMAQIAGRA 262
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G +T D
Sbjct: 263 GRHHRDGSFGTLTGTGGHD 281
>gi|407773998|ref|ZP_11121298.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
gi|407283444|gb|EKF08985.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
Length = 977
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 19/289 (6%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDD 62
V D IDEIQM RG FT R L +E G P+I++++ D+
Sbjct: 88 VAKQVDFLAIDEIQMCADPERGHVFTDRLLHARGRHETMFMGAETIRPVIRKLV----DN 143
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
V+ ER S L + + +VTFS +Y + + + R K ++V G+
Sbjct: 144 VEFDRRERFSTLTYNGAK--KIQRLPSQSAVVTFSAQEVYAVAELVR-RQKGGAAVVLGA 200
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q F + E + L+A+DAIGMGLNL+++ + F+ M KFDG R LT E
Sbjct: 201 LSPRTRNAQVEMFQNG--EVEHLIATDAIGMGLNLDLNHVAFAAMTKFDGKFNRGLTAAE 258
Query: 183 VKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP--SPMLESAGL-FPNFDLI 236
QIAGRAGR+ G+ G ++ +D + + + + EP +A L F D +
Sbjct: 259 TAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEEHEFEPLAKVFWRNARLDFRTVDAL 318
Query: 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 285
R D + ++ L A E+V ++AT D++ L
Sbjct: 319 QKSLRRRSDDPTLILAREPVDEIMLDH---LARNEDVARIATAPDRVQL 364
>gi|310815305|ref|YP_003963269.1| helicase [Ketogulonicigenium vulgare Y25]
gi|385232845|ref|YP_005794187.1| Helicase [Ketogulonicigenium vulgare WSH-001]
gi|308754040|gb|ADO41969.1| helicase, putative [Ketogulonicigenium vulgare Y25]
gi|343461756|gb|AEM40191.1| Helicase, putative [Ketogulonicigenium vulgare WSH-001]
Length = 951
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH---LCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT L+ A LH G P I ++ V+
Sbjct: 89 DFVAIDEIQLCADPERGHIFTDRLM--YARGLHETLFLGSETMRPAIAALVP----GVQF 142
Query: 66 QSYERLSPLV---PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
ER S L P + + + IV FS +Y + + I R + ++V G+
Sbjct: 143 IRRERFSTLTYTGPQKI-----ARMPERAAIVAFSVDEVYAIAEYIR-RTRGGAAVVMGA 196
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q F S + D LVA+DAIGMGLNL+IS + FS ++KFDG +RDL E
Sbjct: 197 LSPRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDISHVAFSALRKFDGHRMRDLHADE 254
Query: 183 VKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
+ QIAGRAGR+ G+ G+V +D+ED+ + P L+
Sbjct: 255 LAQIAGRAGRHLSPGTFGVTGDVPEMDAEDVAAIEAHQFRPVSRLQ 300
>gi|389862054|ref|YP_006364294.1| helicase domain-containing protein [Modestobacter marinus]
gi|388484257|emb|CCH85791.1| Helicase domain protein [Modestobacter marinus]
Length = 594
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 4/183 (2%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
V+DE + RG + R LL E+HL A L+ + L + V+V +++RL
Sbjct: 140 VLDEAHWVTDADRGHHWARLLLTGEYQEMHLISAAEAY-LVLKPLVADAEQVEVVNHKRL 198
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L L P+ ++ +V FSR +Y + ++ ++YG+LPP TR
Sbjct: 199 SRLDVLRGPV-RPDAVRPQTLVVAFSRKTVYAVAAELDQHRAGKVGVLYGALPPATRREV 257
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
RF + E DVLV +D IG G+N+ + ++F+ KFDG ELR L E QIAGRAG
Sbjct: 258 IERFT--TGELDVLVTTDVIGHGINVPATTVLFAETTKFDGQELRPLRTWEAAQIAGRAG 315
Query: 192 RYG 194
RYG
Sbjct: 316 RYG 318
>gi|402820775|ref|ZP_10870339.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
gi|402510421|gb|EJW20686.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
Length = 908
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 13/216 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL N E L G VP+++Q+L + S
Sbjct: 94 DFMAIDEIQLAADAERGHIFTDRLLHARGNQETMLLGAATMVPMVKQLLP----KAHIIS 149
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S + I +FS ++Y + + + + K ++V G+L P T
Sbjct: 150 RPRLSTLSYAGSK--KLSRLPRRTAITSFSVDSVYAIAEVVRQQ-KGGAAVVMGALSPRT 206
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S E D +VA+DAIGMGLN+++ + F+ +KFDG R+L E+ Q+A
Sbjct: 207 RNAQVDMYQ--SGEVDFMVATDAIGMGLNMDVDHVAFAQTRKFDGRNHRELGAAELAQVA 264
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
GRAGR+ G+ GE+ LD + + + EP
Sbjct: 265 GRAGRHITDGTFGVTGEMLPLDETLVEQIENNTFEP 300
>gi|262277942|ref|ZP_06055735.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
gi|262225045|gb|EEY75504.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
Length = 823
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKV 65
+++ IDEIQM RG FT LL ++L + G LI ++ T +
Sbjct: 89 NFEFVAIDEIQMCADPERGHIFTDRLLNFRGDKLTMFLGSDTIKKLITTLVPET----EF 144
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ERLS L S I+ I+ FS +Y L + + R K ++V GSL P
Sbjct: 145 IYRERLSKLTYSGYK--KISRIKPRSAIIAFSVDDVYALAEFVR-RQKGGAAVVMGSLSP 201
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
+TR Q + S + D L+A+DAIGMG+N++I + FS +KK+DG ++R+L E+ Q
Sbjct: 202 KTRNSQVDIY--QSGDVDFLIATDAIGMGINMDIENVYFSGLKKYDGKQIRNLRDSEIGQ 259
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLL--HK 215
I+GRAGRY GS GE L E + L HK
Sbjct: 260 ISGRAGRYMNDGSFGTTGECEKLTDEQIEKLENHK 294
>gi|302798691|ref|XP_002981105.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
gi|300151159|gb|EFJ17806.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
Length = 730
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 137/370 (37%), Gaps = 171/370 (46%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MAD+ +Y+CAVIDEIQ + T+ L C L+L + + IL V G
Sbjct: 114 MADITREYECAVIDEIQ---------ARTKIFLVRCYLRLYLLMN------LYVILDVFG 158
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++ +++E L P + CS+VY
Sbjct: 159 AEIAFETFEALHPAIN---------------------------------------CSVVY 179
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
GSLPPETRT+Q + KFDG+ L+V
Sbjct: 180 GSLPPETRTKQ-----------------------------------LDKFDGIARCYLSV 204
Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
+VKQIAGRAGRY GL +F
Sbjct: 205 MQVKQIAGRAGRY--------------------------------QIGLCCSF------- 225
Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
+P+ ILE F+ +S +F + +L +A ++D +PL + ++LFC
Sbjct: 226 --YPNFPFSAILEKFIATVTVSSMFFLCDSTNLLAIARMLDDIPLPMDSRFLFCTC---- 279
Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
TQ L ELES+HKVLD+Y+WLS+
Sbjct: 280 -------------------------------------TQKDLAELESVHKVLDMYIWLSY 302
Query: 361 RLEESFPDRE 370
RLE++F DR+
Sbjct: 303 RLEDAFVDRD 312
>gi|262198861|ref|YP_003270070.1| helicase [Haliangium ochraceum DSM 14365]
gi|262082208|gb|ACY18177.1| helicase domain protein [Haliangium ochraceum DSM 14365]
Length = 793
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 99/191 (51%), Gaps = 10/191 (5%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALL-GICANELHLCGDPAAVPLIQQILQVTGDD 62
V + D +DEIQ+ RG FT LL E G P+++ +L D
Sbjct: 80 VSREVDFLAVDEIQLAAHHQRGHVFTARLLEARGRKETWFLGADTMRPILRALLP----D 135
Query: 63 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
V+V SY RLS L V S ++ +V FS +Y L + + R + ++V G+
Sbjct: 136 VQVSSYPRLSQLRYAGV--SSLRSLPPRSAVVAFSVDEVYELAERLRQR-RGGVAVVLGA 192
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q + S E +VA+DAIGMGLN+++ I F+ +K+DG E+R L E
Sbjct: 193 LSPRTRNAQVALYQ--SGEVQYMVATDAIGMGLNMDVDHIAFAATRKYDGREVRYLEPSE 250
Query: 183 VKQIAGRAGRY 193
+ QIAGRAGR+
Sbjct: 251 LAQIAGRAGRF 261
>gi|148556442|ref|YP_001264024.1| helicase domain-containing protein [Sphingomonas wittichii RW1]
gi|148501632|gb|ABQ69886.1| helicase domain protein [Sphingomonas wittichii RW1]
Length = 865
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 26/237 (10%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
DY +DE Q+ RG FT R L E + G A P+I+ ++ D ++
Sbjct: 101 DYAFVALDEAQLGADPERGHVFTDRLLRARGREETMILGSEALRPMIRALVP----DAEI 156
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
R S L S + IV FS +Y + + + R + ++V G+L P
Sbjct: 157 IGRPRFSTLTYAGAT--KLSRLPPRSAIVAFSAEEVYAVAEMLR-RLRGGAAVVMGALSP 213
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + E D LVA+DAIGMGLN++++ + F++++KFDG R LT+ E+ Q
Sbjct: 214 RTRNAQVGMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFASLRKFDGRRARRLTIAEMAQ 271
Query: 186 IAGRAGRY---------------GSKFPVGEVTCLDSEDLPLL-HKSLLEPSPMLES 226
IAGRAGR+ G++F EV +++ P + H E +P L S
Sbjct: 272 IAGRAGRHQRDGTFGTLALEGGSGARFEDEEVDAIEAHHFPPIDHLYWREGAPSLAS 328
>gi|167648077|ref|YP_001685740.1| helicase domain-containing protein [Caulobacter sp. K31]
gi|167350507|gb|ABZ73242.1| helicase domain protein [Caulobacter sp. K31]
Length = 851
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT LL E L G PLI+++L D ++ + ER
Sbjct: 98 AIDEIQLCADPERGHIFTHRLLHARGRFETMLLGAGTMAPLIRRLLP----DAEIVTRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + +V FS A+Y + + I R + ++V GSL P TR
Sbjct: 154 FSNLTYSGSK--KLTRLPRRSAVVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAGRA 268
Query: 191 GRY 193
GRY
Sbjct: 269 GRY 271
>gi|118591276|ref|ZP_01548674.1| helicase-like protein [Stappia aggregata IAM 12614]
gi|118435948|gb|EAV42591.1| helicase-like protein [Stappia aggregata IAM 12614]
Length = 1060
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDE+Q+ G RG FT +L + +E L G A PL++++L + V +
Sbjct: 100 DFVAIDEVQLAGNLDRGHVFTDRILNVRGQSETLLLGAATARPLLEKLLP----GLNVVT 155
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R+S L S + IV FS +Y + + I R + ++V GSL P T
Sbjct: 156 RPRMSVLEYAGSK--KVSRLPARSAIVAFSSDEVYSIAELIR-RQRGGAAVVLGSLSPRT 212
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F + + D LVA+DAIGMGLNL++ I F+ +K+DG + R LT E+ QIA
Sbjct: 213 RNAQVELFQNG--DVDHLVATDAIGMGLNLDVHHIAFAGNRKYDGYQYRQLTASEMGQIA 270
Query: 188 GRAGRY---GSKFPVGEVTCLD 206
GRAGR+ G+ G V LD
Sbjct: 271 GRAGRHTKDGTFGVTGRVDPLD 292
>gi|444309813|ref|ZP_21145444.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
gi|443486895|gb|ELT49666.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
Length = 1028
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 42/368 (11%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G +++++L+ +
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLR----GIN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL---FPNFD-LIY 237
QIAGRAGR+ G+ G+V D E + + +P +L+ F + D L Y
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQWRTARFDFSSLDSLRY 327
Query: 238 MYSRLHPDSSLYGIL----EHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLF 293
P L L + LEN + EE++++AT P R+ +
Sbjct: 328 SLETPAPVEGLAKALPAVDQQALEN--------LSKDEEIVRLATT----PARIELLWDA 375
Query: 294 CISPVDMNDDISSQGLTQFATNYS---KKGIVQLREIFTPGTLQVPKTQAALRELESI-H 349
C P D +Q AT Y ++G V E + + QV + + E++++ H
Sbjct: 376 CALP-DYRKIAPAQHADIIATIYQDLVRRGSVD--EDYM--SEQVRRADSTEGEIDTLSH 430
Query: 350 KVLDLYVW 357
+V + W
Sbjct: 431 RVAQIRTW 438
>gi|153008465|ref|YP_001369680.1| helicase domain-containing protein [Ochrobactrum anthropi ATCC
49188]
gi|151560353|gb|ABS13851.1| helicase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 1027
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G +++++L+ +
Sbjct: 97 TDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLR----GIN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGAK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|239832852|ref|ZP_04681181.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
gi|239825119|gb|EEQ96687.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
Length = 1040
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 42/368 (11%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G +++++L+ +
Sbjct: 109 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLR----GIN 164
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 165 VVTRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 221
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 222 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 279
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL---FPNFD-LIY 237
QIAGRAGR+ G+ G+V D E + + +P +L+ F + D L Y
Sbjct: 280 QIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQWRTARFDFSSLDSLRY 339
Query: 238 MYSRLHPDSSLYGIL----EHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLF 293
P L L + LEN + EE++++AT P R+ +
Sbjct: 340 SLETPAPVEGLAKALPAVDQQALEN--------LSKDEEIVRLATT----PARIELLWDA 387
Query: 294 CISPVDMNDDISSQGLTQFATNYS---KKGIVQLREIFTPGTLQVPKTQAALRELESI-H 349
C P D +Q AT Y ++G V E + + QV + + E++++ H
Sbjct: 388 CALP-DYRKIAPAQHADIIATIYQDLVRRGSVD--EDYM--SEQVRRADSTEGEIDTLSH 442
Query: 350 KVLDLYVW 357
+V + W
Sbjct: 443 RVAQIRTW 450
>gi|329849614|ref|ZP_08264460.1| mgpS [Asticcacaulis biprosthecum C19]
gi|328841525|gb|EGF91095.1| mgpS [Asticcacaulis biprosthecum C19]
Length = 976
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ G RG FT LL E G PL ++ ++
Sbjct: 105 DFLAVDEIQLCGDTERGHVFTDRLLHARGRFETLFLGANTFAPLFHRLFPA----AEIIR 160
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLS L + + IV FS +Y + + I R + ++V GSL P+T
Sbjct: 161 RERLSSLTYAGSK--KLTRLPKRTAIVAFSTEKVYAIAELIR-RQRGGAAVVMGSLSPKT 217
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F E D LVA+DAIGMGLN++I+ + FS + KFDG +R LT E+ QIA
Sbjct: 218 RNAQVELFQ--KGEVDFLVATDAIGMGLNMDIAHVAFSGLSKFDGKNVRHLTAQEIGQIA 275
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGR+ G+ GE LD +
Sbjct: 276 GRAGRHMNDGTFGVTGECHELDDD 299
>gi|409402747|ref|ZP_11252240.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
gi|409128730|gb|EKM98617.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
Length = 852
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 100/184 (54%), Gaps = 14/184 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G PL++++ V G V++++
Sbjct: 96 AVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGADTIAPLMRRL--VPG--VEIETR 149
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLS L S + IV FS +Y + +A+ R + C++V G L P TR
Sbjct: 150 PRLSQLSFAGA--AKLSRLPPRSAIVAFSAAEVYAIAEAVRRR-RGGCAVVMGRLSPRTR 206
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + D E D LVA+DAIGMGLN++++ + F+ ++KFDG + R LT EV QIAG
Sbjct: 207 NAQVALYQD--KEVDFLVATDAIGMGLNMDVNHVAFAGIRKFDGRQPRLLTPSEVAQIAG 264
Query: 189 RAGR 192
RAGR
Sbjct: 265 RAGR 268
>gi|406922774|gb|EKD60142.1| hypothetical protein ACD_54C00916G0001, partial [uncultured
bacterium]
Length = 846
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 21/235 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH---LCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT LL A LH G P I +++ V+
Sbjct: 89 DFVAVDEIQLCADPDRGHVFTDRLL--RARGLHETLFMGAETMRPAIAGLIK----GVQF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+R S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 143 LKRDRFSELTYTGSK--KISRMPERSAIVGFSVENVYAIAELIR-RTKGGCAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I I F+ KFDG +R L E+ Q
Sbjct: 200 RTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIKHIAFAATSKFDGRRMRALYPQELAQ 257
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
IAGRAGR+ G+ GEV LD E + + + +P LE + N DL +
Sbjct: 258 IAGRAGRHLENGTFGVTGEVRPLDDETVAAIQEHRFDPVRKLE----WRNHDLEF 308
>gi|295691057|ref|YP_003594750.1| helicase domain-containing protein [Caulobacter segnis ATCC 21756]
gi|295432960|gb|ADG12132.1| helicase domain protein [Caulobacter segnis ATCC 21756]
Length = 852
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL++++L D ++ S ER
Sbjct: 98 AVDEIQLCADPERGHIFTHRLLHARGKFETMFLGAGTMAPLVRRLLP----DAEIVSRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + IV FS A+Y + + I R + ++V GSL P TR
Sbjct: 154 FSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAGRA 268
Query: 191 GRY 193
GRY
Sbjct: 269 GRY 271
>gi|357025986|ref|ZP_09088096.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
gi|355542135|gb|EHH11301.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
Length = 1146
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G ++Q++L+ V
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLK----GVS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT E+
Sbjct: 210 PRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVAFAQNRKFDGYQFRDLTSAELG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V LD E + + +P +L+
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVDPLDEELVKKIEGHDFDPVKVLQ 311
>gi|221233631|ref|YP_002516067.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
gi|220962803|gb|ACL94159.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
Length = 855
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL++++L D ++ S ER
Sbjct: 98 AVDEIQLCADPERGHIFTHRLLHARGKFETMFLGAGTMAPLVRRLLP----DAEIVSRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + IV FS A+Y + + I R + ++V GSL P TR
Sbjct: 154 FSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAGRA 268
Query: 191 GRY 193
GRY
Sbjct: 269 GRY 271
>gi|16124910|ref|NP_419474.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
gi|13421872|gb|AAK22642.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
Length = 824
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL++++L D ++ S ER
Sbjct: 67 AVDEIQLCADPERGHIFTHRLLHARGKFETMFLGAGTMAPLVRRLLP----DAEIVSRER 122
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + IV FS A+Y + + I R + ++V GSL P TR
Sbjct: 123 FSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 179
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAGRA
Sbjct: 180 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAGRA 237
Query: 191 GRY 193
GRY
Sbjct: 238 GRY 240
>gi|148559358|ref|YP_001259613.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
gi|148370615|gb|ABQ60594.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
Length = 1003
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 77 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 132
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L L + + IV FS +Y + + I R + ++V G+L
Sbjct: 133 VVTRPRLSHLA--YAGLKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 189
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 190 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 247
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 248 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 291
>gi|404320554|ref|ZP_10968487.1| helicase domain-containing protein [Ochrobactrum anthropi CTS-325]
Length = 1029
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G +++++L+ +
Sbjct: 97 TDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLR----GIN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|13473300|ref|NP_104867.1| MgpS, ATP-dependent helicase [Mesorhizobium loti MAFF303099]
gi|14024048|dbj|BAB50653.1| ATP-dependent helicase; MgpS [Mesorhizobium loti MAFF303099]
Length = 1092
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G ++Q++L+ V
Sbjct: 61 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLK----GVS 116
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 117 VVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALS 173
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F S + D LVA+DAIGMGLNL++ + F+ +KFDG + R+LT E+
Sbjct: 174 PRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVAFAQNRKFDGYQYRNLTAAELG 231
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V LD E + + +P +L+
Sbjct: 232 QIAGRAGRHLRDGTFGVTGQVDPLDEELVKKIESHDFDPVKVLQ 275
>gi|405382540|ref|ZP_11036322.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321041|gb|EJJ25467.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 1045
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 104/201 (51%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + V R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQQLLP----GITVTERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--LYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 213 QVALYQEGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDEE 291
>gi|337265871|ref|YP_004609926.1| helicase domain-containing protein [Mesorhizobium opportunistum
WSM2075]
gi|336026181|gb|AEH85832.1| helicase domain protein [Mesorhizobium opportunistum WSM2075]
Length = 1162
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G ++Q++L+ V
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLK----GVS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F S + D LVA+DAIGMGLNL++ + F+ +KFDG + R+LT E+
Sbjct: 210 PRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVAFAQNRKFDGYQYRNLTAAELG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V LD E + + +P +L+
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVDPLDEELVKKIEGHDFDPVKVLQ 311
>gi|319781061|ref|YP_004140537.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166949|gb|ADV10487.1| helicase domain protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 1121
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 12/208 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+D IDE+Q+ G RG FT +L + + L +Q ILQ V V
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLL---LGAATMQSILQRLLRGVSV 153
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 154 VTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALSP 210
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D L+A+DAIGMGLNL++ + F+ +KFDG + R+LT E+ Q
Sbjct: 211 RTRNAQVALFQ--SGDVDYLIATDAIGMGLNLDLDHVAFAQNRKFDGFQYRNLTAAELGQ 268
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDL 210
IAGRAGR+ G+ G+V LD EDL
Sbjct: 269 IAGRAGRHLRDGTFGVTGQVDPLD-EDL 295
>gi|85375454|ref|YP_459516.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
gi|84788537|gb|ABC64719.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
Length = 852
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE Q+ + RG FT R L E L G P+++ ++ +V++ R
Sbjct: 92 ALDEAQLSADRERGHIFTDRLLHARGREETMLLGSATLEPVLKSLVP----RAQVETRPR 147
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L ++ S + IV FS +Y + + + R + ++V G+L PETR +
Sbjct: 148 FSTLT--HIGPRKLSRLPPRSAIVGFSAEQVYTVAEMLR-RHRGGAAVVMGALSPETRNK 204
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S E D +VA+DAIGMGLNL+++ + F+++ KFDGV R LT E+ QIAGRA
Sbjct: 205 QVELFQ--SGEVDYIVATDAIGMGLNLDVTHVAFASLVKFDGVRQRRLTPAEMAQIAGRA 262
Query: 191 GRYGSKFPVGEVTC-------LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GR+ G ++ LD E++ + + P L P FD I
Sbjct: 263 GRHQKDGTFGTLSGGRGGAAELDEEEIFAIEEHRFAPLTHLYWREAEPRFDTI 315
>gi|399073278|ref|ZP_10750326.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398041644|gb|EJL34699.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 852
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E L G PLI+++L D ++ + ER
Sbjct: 98 AVDEIQLCADPERGHIFTHRLLHARGRYETMLLGAGTMAPLIRRLLP----DAEIVTRER 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + +V FS A+Y + + I R + ++V GSL P TR
Sbjct: 154 FSSLTYSGSK--KLTRLPRRSAVVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGRRTRWLYPQEVAQIAGRA 268
Query: 191 GRY 193
GR+
Sbjct: 269 GRH 271
>gi|149185283|ref|ZP_01863600.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
gi|148831394|gb|EDL49828.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
Length = 837
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE Q+ + RG FT LL E L G P+++ +L ++ R
Sbjct: 92 ALDEAQLSADRERGHVFTDRLLNARGREETMLLGAATLAPMVRSLLP----QAEITERAR 147
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L ++ S + IV FS +Y + + + R + ++V G+L PETR R
Sbjct: 148 FSTLT--HIGPRKLSRLPPRSAIVAFSAEQVYAVAEMLR-RFRGGAAVVMGALSPETRNR 204
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D +VA+DAIGMGLNL++S + F+ + KFDGV +R L E+ QIAGRA
Sbjct: 205 QVELFQN--GEVDYIVATDAIGMGLNLDVSHVAFAGLTKFDGVRMRRLFPAEMAQIAGRA 262
Query: 191 GRY 193
GR+
Sbjct: 263 GRH 265
>gi|254418943|ref|ZP_05032667.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
gi|196185120|gb|EDX80096.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
Length = 838
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ++ RG FT+ LL E G PLI++++ DV++ + +R
Sbjct: 98 AIDEIQLVADPERGHVFTQRLLHARGRFETMFLGAGTMEPLIRRLVP----DVEIVTRDR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V GSL P TR
Sbjct: 154 LSTLSYAGSK--KLTRLPRRSAIVAFSTERVYAIAELIR-RQRGGAAVVMGSLSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIAGRA
Sbjct: 211 QVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGRRTRWLHAHEIGQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
GR+ G+ E LD++ + + + +P E +FD +
Sbjct: 269 GRHLRDGTFGVTAEAEDLDADLVEQVVEHRFDPVEAAEWRNARLDFDTL 317
>gi|429767722|ref|ZP_19299909.1| helicase protein [Brevundimonas diminuta 470-4]
gi|429189881|gb|EKY30697.1| helicase protein [Brevundimonas diminuta 470-4]
Length = 832
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ++ RG FT+ LL E G PL++ ++ D ++ +
Sbjct: 88 DFLAVDEIQLVADPERGHVFTQRLLHARGRFETMFLGAGTMAPLMRSLVP----DAEIVT 143
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+RLS L + + +V FS +Y + + + R + ++V GSL P T
Sbjct: 144 RDRLSTLSYAGSK--KLTRLPRRSAVVAFSTEQVYAIAELLR-RQRGGAAVVMGSLSPRT 200
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIA
Sbjct: 201 RNAQVELFQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGRRTRWLHAAEIGQIA 258
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDL 210
GRAGR+ G+ GE LD EDL
Sbjct: 259 GRAGRHLRDGTFGVTGEAEELD-EDL 283
>gi|359408185|ref|ZP_09200657.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356676942|gb|EHI49291.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 916
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 128/260 (49%), Gaps = 23/260 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
DC V+DEIQ+ G + RG FT R L +E L G PL++ +L + + S
Sbjct: 92 DCLVVDEIQLCGDRERGHIFTDRLLHARGRHETLLLGAHTMRPLLETLLP----EAEFIS 147
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+R S L + +Q IV FS +YRL + + R + ++V G+L P T
Sbjct: 148 RDRFSRLS--YAGQKKTTRLQRRSAIVAFSASEVYRLAELVR-RQRGGAAVVMGALSPRT 204
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D L+A+DAIGMGLN++I + + KFDG +R L E+ QIA
Sbjct: 205 RNAQVELYQNG--DVDFLIATDAIGMGLNMDIGHVALADDMKFDGQSMRRLAPSELAQIA 262
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSS 247
GRAGR+ + G +ED L + +++ +ES FP +Y +R +
Sbjct: 263 GRAGRHTTDGTFGV-----TEDCRPLEQEVID---AIESH-YFPPVRQLYWRAR----NL 309
Query: 248 LYGILEHFLENAKLSENYFF 267
Y L+ L++ + + Y F
Sbjct: 310 NYNTLDGLLKSLEAAPPYAF 329
>gi|399065179|ref|ZP_10747801.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
gi|398029998|gb|EJL23439.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
Length = 850
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE Q+ + RG FT R L E + G A PL++ ++ V++ + R
Sbjct: 103 AIDEAQLAADRERGHVFTDRLLHARGREETMILGSSIAEPLVRALVP----GVEIVTRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S + IV FS +Y + + + R + ++V G+L P+TR
Sbjct: 159 FSTLT--HSGAKKLSRVPPRSAIVAFSSEQVYAIAEMLR-RFRGGAAVVMGALSPQTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL++ + F+ + K+DG R LT PE+ QIAGRA
Sbjct: 216 QVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGLSKYDGRRHRRLTPPEMAQIAGRA 273
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G +T D
Sbjct: 274 GRHQKDGTFGTLTGSGGHD 292
>gi|328542021|ref|YP_004302130.1| helicase [Polymorphum gilvum SL003B-26A1]
gi|326411771|gb|ADZ68834.1| Helicase conserved C-terminal domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 1004
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQ----VTGD 61
D + IDE+Q+ G RG FT +L + +E L G A PL+++++ VT
Sbjct: 81 DTEFVAIDEVQLAGDLERGHVFTNRILNLRGRSETLLLGAATARPLLEKLIPGLNVVTRP 140
Query: 62 DVKVQSYERLSPLVPLNVPLGS--FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ V SY GS S + T +V FS +Y + + I R + ++V
Sbjct: 141 RMSVLSYS------------GSKKISRLPTRSAVVAFSSGEVYAIAELIR-RQRGGAAVV 187
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
GSL P TR Q F + + D LVA+DAIGMGLNL++ I F+ +KFDG + R L+
Sbjct: 188 LGSLSPRTRNAQVELFQNG--DVDYLVATDAIGMGLNLDVDHIAFAGNRKFDGYQYRALS 245
Query: 180 VPEVKQIAGRAGRY 193
E+ QIAGRAGR+
Sbjct: 246 PAEMGQIAGRAGRH 259
>gi|379736251|ref|YP_005329757.1| putative helicase [Blastococcus saxobsidens DD2]
gi|378784058|emb|CCG03726.1| Putative helicase [Blastococcus saxobsidens DD2]
Length = 603
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 4/183 (2%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
V+DE + RG + R LL E+HL A L++ ++ + V V +++RL
Sbjct: 143 VLDESHWIADPDRGHHWARLLLTGEYREMHLISAAEAYLLLKPLVS-DAEHVTVVNHKRL 201
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L L P+ ++++ +V FSR +Y ++ ++YG+LPP TR
Sbjct: 202 SRLDVLRAPV-RPADVRPQTLVVAFSRKTVYAAAAELDQHRPGKVGVLYGALPPATRREV 260
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
RF S E +VLV +D IG G+N+ + ++F+ KFDG ++R L E QIAGRAG
Sbjct: 261 IERFT--SGEVEVLVTTDVIGHGINVPATTVLFAETTKFDGTKVRPLRSWETAQIAGRAG 318
Query: 192 RYG 194
RYG
Sbjct: 319 RYG 321
>gi|162147813|ref|YP_001602274.1| helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209542436|ref|YP_002274665.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786390|emb|CAP55972.1| putative helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530113|gb|ACI50050.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 890
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G PL+++++ V+++S
Sbjct: 111 AVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGAETIRPLLRRLVP----GVEIESR 164
Query: 69 ERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L L GS + + IV FS +Y + + I R + C++V G L P T
Sbjct: 165 PRLSQLTHLG---GSKLTRLPPRSAIVAFSATEVYAIAELIRRR-RGGCAVVMGQLSPRT 220
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + D E D LVA+DAIGMGLN++++ + F+ + KFDG R L+ E+ QIA
Sbjct: 221 RNAQVALYQD--REVDYLVATDAIGMGLNMDVNHVAFAGLSKFDGARARPLSPAEIAQIA 278
Query: 188 GRAGR 192
GRAGR
Sbjct: 279 GRAGR 283
>gi|406707337|ref|YP_006757689.1| helicase family protein [alpha proteobacterium HIMB59]
gi|406653113|gb|AFS48512.1| helicase family protein [alpha proteobacterium HIMB59]
Length = 848
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 26/209 (12%)
Query: 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL----IQQILQVTGDDV 63
++ +DEIQ+ RG FT+ +L + G+ + L +++I++ DV
Sbjct: 84 FEFVCVDEIQLAADYERGHIFTQRIL-------YARGEQKTIFLGSTTMEEIIKELIPDV 136
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+++ R S L + NI+ I+ F+ +Y + + I S K ++V G+L
Sbjct: 137 EIKFKNRFSELNF--IGHKKIQNIKPRSAIIAFNLIGLYEIAEQIRSL-KGGVALVAGAL 193
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P+TR Q + D E D +VA+DAIGMGLNLNI+++ FS ++KFDG R L+ EV
Sbjct: 194 SPKTRNSQVKLYEDG--EVDYIVATDAIGMGLNLNINQVYFSGLEKFDGKYTRPLSDMEV 251
Query: 184 KQIAGRAGRY----------GSKFPVGEV 202
QIAGRAGRY G+KF E+
Sbjct: 252 AQIAGRAGRYTKSGYFGSTLGAKFTNMEI 280
>gi|389878914|ref|YP_006372479.1| Helicase-like protein [Tistrella mobilis KA081020-065]
gi|388529698|gb|AFK54895.1| Helicase-like protein [Tistrella mobilis KA081020-065]
Length = 880
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Query: 13 IDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
+DEIQ+ RG FT LL E G PL++++L +++ S R+
Sbjct: 97 VDEIQLAADPDRGHIFTDRLLHARGFAETMFLGAETIAPLMRRLLP----GIEIDSRPRM 152
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S LV S + + IV FS +Y + + I R + ++V G+L P TR Q
Sbjct: 153 SKLVYTGAK--SLTRLPPRTAIVAFSAADVYAIAE-IMRRQRGGAAVVMGALSPRTRNAQ 209
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
+ + E D LVA+DAIGMGLNL++ + F+ +KFDG +LR LT E+ QIAGRAG
Sbjct: 210 VEMYQE--GEVDFLVATDAIGMGLNLDVDHVCFAATRKFDGRDLRPLTAQELAQIAGRAG 267
Query: 192 RY 193
R+
Sbjct: 268 RH 269
>gi|229365483|dbj|BAH57991.1| hypothetical protein [Acetobacter lovaniensis]
Length = 634
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G PL++ +++ D+++ + R
Sbjct: 67 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIR----DIEIDTRPR 122
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + C++V G L P TR
Sbjct: 123 LSSLT--YTGHMRLSRLPARTAIVAFSMAEVYAIAELIR-RKRGGCAVVMGQLSPRTRNA 179
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QIAGRA
Sbjct: 180 QVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANITKFDGHRNRLLTPAEAAQIAGRA 237
Query: 191 GR------YGSK-----FPVGEVTCLDS---EDLPLL 213
GR +G+ FP G V +++ E LP L
Sbjct: 238 GRGTQDGTFGTTGECPPFPEGMVEAIETHHFEPLPFL 274
>gi|261219352|ref|ZP_05933633.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261322413|ref|ZP_05961610.1| helicase domain-containing protein [Brucella ceti M644/93/1]
gi|260924441|gb|EEX91009.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261295103|gb|EEX98599.1| helicase domain-containing protein [Brucella ceti M644/93/1]
Length = 887
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|261325802|ref|ZP_05964999.1| helicase domain-containing protein [Brucella neotomae 5K33]
gi|261301782|gb|EEY05279.1| helicase domain-containing protein [Brucella neotomae 5K33]
Length = 1006
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|237837649|ref|XP_002368122.1| helicase, putative [Toxoplasma gondii ME49]
gi|211965786|gb|EEB00982.1| helicase, putative [Toxoplasma gondii ME49]
gi|221509112|gb|EEE34681.1| helicase, putative [Toxoplasma gondii VEG]
Length = 1779
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + CAV+DE Q+L RG ++T ALLG+ A ELH+C + A+ L++ + Q G
Sbjct: 752 MAPLDRRFACAVLDEAQLLANSQRGDAWTNALLGLQAEELHVCSEVRALHLLETLAQECG 811
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + Y+RLSP+ P+ +++TGDC++ F+R + RLK+ +E G H+C+ VY
Sbjct: 812 DRFVGRVYQRLSPISVDAGPVARLEDLETGDCLLCFTRLDVLRLKRKLELLGFHVCA-VY 870
Query: 121 GSLPPETRTRQATRFN 136
G LPP + RQA +FN
Sbjct: 871 GHLPPAIKQRQARKFN 886
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 28/190 (14%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF--PVGE 201
VL+++DA+GMGLNL I R++F ++KF G R LTV E++Q+ GRAGR G F G
Sbjct: 1006 VLISTDAVGMGLNLEIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 202 VTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNFDLIYM--------------------- 238
VTC++ ED L + SP+ L+ A L P +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 239 -YSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEKYLFCI 295
+S H S ++ F + A + + +F +L V + LPL + + F +
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLAAVDDAFFVPRHKLNRMLTVLHALADLPLSRQQLFTFAL 1185
Query: 296 SPVDMNDDIS 305
+P+ ++ ++
Sbjct: 1186 APLPLSTPLA 1195
>gi|62290640|ref|YP_222433.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82700554|ref|YP_415128.1| hypothetical protein BAB1_1781 [Brucella melitensis biovar Abortus
2308]
gi|189024852|ref|YP_001935620.1| ATP-dependent helicase [Brucella abortus S19]
gi|237816140|ref|ZP_04595135.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260547123|ref|ZP_05822861.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260758686|ref|ZP_05871034.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260762521|ref|ZP_05874858.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884482|ref|ZP_05896096.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297249034|ref|ZP_06932742.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|376272507|ref|YP_005151085.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|423169363|ref|ZP_17156064.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|423172487|ref|ZP_17159160.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|423175623|ref|ZP_17162291.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|423178818|ref|ZP_17165461.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|423181950|ref|ZP_17168589.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|423185048|ref|ZP_17171683.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|423188202|ref|ZP_17174814.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|423191342|ref|ZP_17177949.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
gi|62196772|gb|AAX75072.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82616655|emb|CAJ11737.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Brucella
melitensis biovar Abortus 2308]
gi|189020424|gb|ACD73146.1| ATP-dependent helicase [Brucella abortus S19]
gi|237788602|gb|EEP62815.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260095488|gb|EEW79366.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260669004|gb|EEX55944.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260672947|gb|EEX59768.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260874010|gb|EEX81079.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297174167|gb|EFH33524.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|363400113|gb|AEW17083.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|374535057|gb|EHR06584.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|374535250|gb|EHR06776.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|374535549|gb|EHR07071.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|374544581|gb|EHR16051.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|374544872|gb|EHR16337.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|374545025|gb|EHR16489.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|374552853|gb|EHR24275.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|374553047|gb|EHR24468.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|221488613|gb|EEE26827.1| helicase, putative [Toxoplasma gondii GT1]
Length = 1781
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA + + CAV+DE Q+L RG ++T ALLG+ A ELH+C + A+ L++ + Q G
Sbjct: 752 MAPLDRRFACAVLDEAQLLANSQRGDAWTNALLGLQAEELHVCSEVRALHLLETLAQECG 811
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D + Y+RLSP+ P+ +++TGDC++ F+R + RLK+ +E G H+C+ VY
Sbjct: 812 DRFVGRVYQRLSPISVDAGPVARLEDLETGDCLLCFTRLDVLRLKRKLELLGFHVCA-VY 870
Query: 121 GSLPPETRTRQATRFN 136
G LPP + RQA +FN
Sbjct: 871 GHLPPAIKQRQARKFN 886
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 28/186 (15%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF--PVGE 201
+L+++DA+GMGLNL+I R++F ++KF G R LTV E++Q+ GRAGR G F G
Sbjct: 1006 ILISTDAVGMGLNLDIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 202 VTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNFDLIYM--------------------- 238
VTC++ ED L + SP+ L+ A L P +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 239 -YSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEKYLFCI 295
+S H S ++ F + A + + +F +L V + LPL + + F +
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLASVDDAFFVPRHKLNRMLTVLHALADLPLSRQQLFTFAL 1185
Query: 296 SPVDMN 301
+P+ ++
Sbjct: 1186 APLPLS 1191
>gi|256370176|ref|YP_003107687.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261750920|ref|ZP_05994629.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
gi|256000339|gb|ACU48738.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261740673|gb|EEY28599.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|225853219|ref|YP_002733452.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|256263292|ref|ZP_05465824.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260565736|ref|ZP_05836219.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|265991799|ref|ZP_06104356.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|384212129|ref|YP_005601212.1| ATP-dependent helicase [Brucella melitensis M5-90]
gi|384409230|ref|YP_005597851.1| ATP-dependent helicase [Brucella melitensis M28]
gi|225641584|gb|ACO01498.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|260151109|gb|EEW86204.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|263002755|gb|EEZ15158.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093258|gb|EEZ17355.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|326409777|gb|ADZ66842.1| ATP-dependent helicase [Brucella melitensis M28]
gi|326539493|gb|ADZ87708.1| ATP-dependent helicase [Brucella melitensis M5-90]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|261754174|ref|ZP_05997883.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
gi|261743927|gb|EEY31853.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
Length = 980
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|163845347|ref|YP_001623002.1| hypothetical protein BSUIS_B1246 [Brucella suis ATCC 23445]
gi|163676070|gb|ABY40180.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|330813500|ref|YP_004357739.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486595|gb|AEA81000.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
Length = 823
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
+++ IDEIQM RG FT LL ++L + +++ I+ +
Sbjct: 86 NFEFVGIDEIQMCADPERGHIFTDRLLNYRGDKLTMF---LGADIMKNIISDLVPSSEFV 142
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
+RLS L+ S IQ IV FS +Y L + + R + +IV GSL P+
Sbjct: 143 YRDRLSKLIY--TGHKKISRIQPRSAIVAFSVDEVYALAEFVR-RQRGGAAIVMGSLSPK 199
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + S + D LVA+DAIGMG+N++I + F++++K+DG ++R L E+ QI
Sbjct: 200 TRNSQVELY--QSGDVDFLVATDAIGMGINMDIDHVSFNSIRKYDGKKIRGLRNTEIGQI 257
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDLPLL--HK 215
+GRAGRY GS G L SE + L HK
Sbjct: 258 SGRAGRYINNGSFGITGNCEALTSEQIEKLENHK 291
>gi|294851013|ref|ZP_06791689.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
gi|294821656|gb|EFG38652.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|17986559|ref|NP_539193.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|17982167|gb|AAL51457.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|306844754|ref|ZP_07477339.1| ATP-dependent helicase [Brucella inopinata BO1]
gi|306274926|gb|EFM56696.1| ATP-dependent helicase [Brucella inopinata BO1]
Length = 1023
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|261222888|ref|ZP_05937169.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|265998847|ref|ZP_06111404.1| helicase domain-containing protein [Brucella ceti M490/95/1]
gi|260921472|gb|EEX88125.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|262553536|gb|EEZ09305.1| helicase domain-containing protein [Brucella ceti M490/95/1]
Length = 1028
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|86359601|ref|YP_471493.1| ATP-dependent DNA helicase [Rhizobium etli CFN 42]
gi|86283703|gb|ABC92766.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
Length = 1052
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G P++QQIL + + R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAATMRPILQQILP----GITIVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 LSHL--LYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ +VA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVALYQAGDVEY--MVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPAELGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 264 GRHVRDGTFGVTGQVSPFDEE 284
>gi|384445782|ref|YP_005604501.1| ATP-dependent helicase [Brucella melitensis NI]
gi|349743771|gb|AEQ09314.1| ATP-dependent helicase [Brucella melitensis NI]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|260568846|ref|ZP_05839314.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|376275632|ref|YP_005116071.1| ATP-dependent helicase [Brucella canis HSK A52141]
gi|260154230|gb|EEW89312.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|363404199|gb|AEW14494.1| ATP-dependent helicase [Brucella canis HSK A52141]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|225628330|ref|ZP_03786364.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261315870|ref|ZP_05955067.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261757418|ref|ZP_06001127.1| ATP-dependent helicase [Brucella sp. F5/99]
gi|225616176|gb|EEH13224.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261304896|gb|EEY08393.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737402|gb|EEY25398.1| ATP-dependent helicase [Brucella sp. F5/99]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|265995639|ref|ZP_06108196.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|262766923|gb|EEZ12541.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|261316269|ref|ZP_05955466.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|265987333|ref|ZP_06099890.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340791366|ref|YP_004756831.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
gi|261295492|gb|EEX98988.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|264659530|gb|EEZ29791.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340559825|gb|AEK55063.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|306841484|ref|ZP_07474184.1| ATP-dependent helicase [Brucella sp. BO2]
gi|306288448|gb|EFM59804.1| ATP-dependent helicase [Brucella sp. BO2]
Length = 1028
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|260755464|ref|ZP_05867812.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
gi|260675572|gb|EEX62393.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
Length = 1049
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 118 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 173
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 174 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 230
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 231 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 288
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 289 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 332
>gi|265984782|ref|ZP_06097517.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306839458|ref|ZP_07472266.1| ATP-dependent helicase [Brucella sp. NF 2653]
gi|264663374|gb|EEZ33635.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306405403|gb|EFM61674.1| ATP-dependent helicase [Brucella sp. NF 2653]
Length = 1028
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLFGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V D E + + +P +L+
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQ 311
>gi|421853108|ref|ZP_16285788.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478685|dbj|GAB30991.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 862
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G PL++ +++ D+++ + R
Sbjct: 108 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKSLIR----DIEIDTRPR 163
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + C++V G L P TR
Sbjct: 164 LSNLT--YTGHMRLSRLPARTAIVAFSMAEVYAIAELIR-RKRGGCAVVMGQLSPRTRNA 220
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QIAGRA
Sbjct: 221 QVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICKFDGYRNRLLTPAEAAQIAGRA 278
Query: 191 GR------YGS-----KFPVGEVTCLDS---EDLPLL 213
GR +G+ FP G V +++ E LP L
Sbjct: 279 GRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 315
>gi|260575511|ref|ZP_05843510.1| helicase domain protein [Rhodobacter sp. SW2]
gi|259022431|gb|EEW25728.1| helicase domain protein [Rhodobacter sp. SW2]
Length = 877
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT LL G+ + G + P I ++ V+
Sbjct: 90 DFVAIDEIQLCADPERGHVFTDRLLRARGLL--DTMFLGSDSMRPAIAALVP----GVQF 143
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 144 SRRERFSTLTWNGSK--KISRMPARSAIVGFSVENVYAIAELIR-RQKGGCAVVMGALSP 200
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS KFDG +R L E+ Q
Sbjct: 201 RTRNAQVELYQNG--DVDYLVATDAIGMGLNLDIGHVAFSATAKFDGRRMRALFPHELGQ 258
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
IAGRAGRY GS GE LD E + + P
Sbjct: 259 IAGRAGRYLEPGSFGVTGEAQVLDDEVIEAIENHRFAP 296
>gi|433772744|ref|YP_007303211.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433664759|gb|AGB43835.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 1118
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 14/209 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G ++Q++L+ V
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLK----GVS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F S + D L+A+DAIGMGLNL++ + F+ +KFDG + R+LT E+
Sbjct: 210 PRTRNAQVALFQ--SGDVDYLIATDAIGMGLNLDLDHVAFAQNRKFDGYQYRNLTAAELG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDL 210
QIAGRAGR+ G+ G+V LD EDL
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVDPLD-EDL 295
>gi|402824780|ref|ZP_10874119.1| ATP-dependent helicase [Sphingomonas sp. LH128]
gi|402261711|gb|EJU11735.1| ATP-dependent helicase [Sphingomonas sp. LH128]
Length = 832
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE Q+ + RG FT R L E + G PL++ ++ V+V + R
Sbjct: 87 AIDEAQLAADRERGHVFTDRLLHARGREETMILGSSTVEPLVKALVP----GVEVVTRPR 142
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S + IV FS +Y + + + R + ++V G+L P+TR
Sbjct: 143 FSTLT--HAGAKKLSRVPPRSAIVAFSTEQVYAIAEMLR-RFRGGAAVVMGALSPQTRNA 199
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL++ + F+ + K+DG R LT PE+ QIAGRA
Sbjct: 200 QVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGLSKYDGRRHRRLTPPEMAQIAGRA 257
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G + D
Sbjct: 258 GRHQKDGSFGTLAGTGGHD 276
>gi|340777271|ref|ZP_08697214.1| helicase domain-containing protein [Acetobacter aceti NBRC 14818]
Length = 873
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT R L E G PL+++++ ++ + + R
Sbjct: 131 AIDEIQLCADPERGHIFTSRLLHARGTGETLFLGAETIAPLMRRLVP----EITIDTRPR 186
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L P + IV FS +Y + + I SR + C++V G + P TR
Sbjct: 187 LSALT-FTGP-ARLEKLPARSAIVAFSAAELYAIAELIRSR-RGGCAVVMGQMSPRTRNA 243
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I+ + F+ + KFDG R LT E+ QIAGRA
Sbjct: 244 QVELYQN--REVDYLVATDAIGMGLNMDIAHVAFAGLAKFDGSRRRPLTASEIAQIAGRA 301
Query: 191 GRYGSK 196
GR G+K
Sbjct: 302 GR-GTK 306
>gi|339017923|ref|ZP_08644068.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752926|dbj|GAA07372.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 882
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 10/185 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL E G P+++ +++ +++++
Sbjct: 125 DFVAVDEIQLCADPERGHVFTDRLLNARGEAETLFLGAETIAPVLRTLIR----GIEIET 180
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS LV + S + IV FS +Y + + I R + C++V G L P T
Sbjct: 181 RPRLSNLV--HTGFTRLSRLPPRTAIVAFSAGDVYAIAELIRRR-RGGCAVVMGQLSPRT 237
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLN++I + F+ + KFDG R L E+ QIA
Sbjct: 238 RNAQVALYQN--REVDYLVATDAIGMGLNMDIHHVAFAGLSKFDGSRRRMLAAAEIAQIA 295
Query: 188 GRAGR 192
GRAGR
Sbjct: 296 GRAGR 300
>gi|407768470|ref|ZP_11115848.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288154|gb|EKF13632.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 955
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTG 60
V D IDEIQM RG FT LL GI +E G P+I+Q++
Sbjct: 88 VNKQVDFLAIDEIQMCADPERGHVFTDRLLHARGI--SETMFMGAETIRPVIRQLI---- 141
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D+V+ + R S L + + +VTFS +Y + + + R K ++V
Sbjct: 142 DNVEFDTRARFSTLTYNGSK--KIQRLPSQSAVVTFSAQEVYAVAELVR-RQKGGAAVVL 198
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L P TR Q F + E + L+A+DAIGMGLNL ++ + F+ + KFDG R L+
Sbjct: 199 GALSPRTRNAQVEMFQNG--EVEHLIATDAIGMGLNLELNHVAFAALHKFDGQFNRGLSA 256
Query: 181 PEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
E QIAGRAGR+ G+ G ++ +D + + + EP
Sbjct: 257 AETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEAHEFEP 299
>gi|261214735|ref|ZP_05929016.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
gi|260916342|gb|EEX83203.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
Length = 1028
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L+ V
Sbjct: 97 TDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMRGILEKLLR----GVN 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV
Sbjct: 210 PRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSE 208
QIAGRAGR+ G+ G+V D E
Sbjct: 268 QIAGRAGRHVRDGTFGVTGQVHPFDEE 294
>gi|258541200|ref|YP_003186633.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041121|ref|YP_005479865.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049636|ref|YP_005476699.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052746|ref|YP_005485840.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055978|ref|YP_005488645.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058619|ref|YP_005497747.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061913|ref|YP_005482555.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384117989|ref|YP_005500613.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632278|dbj|BAH98253.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635335|dbj|BAI01304.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638390|dbj|BAI04352.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641444|dbj|BAI07399.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644499|dbj|BAI10447.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647554|dbj|BAI13495.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650607|dbj|BAI16541.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653598|dbj|BAI19525.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
Length = 846
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G PL++ +++ D+++ + R
Sbjct: 92 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIR----DIEIDTRPR 147
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + C++V G L P TR
Sbjct: 148 LSNLT--YTGHIRLSRLPARTAIVAFSMAEVYAIAELIR-RKRGGCAVVMGQLSPRTRNA 204
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QIAGRA
Sbjct: 205 QVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICKFDGYRNRLLTPAEAAQIAGRA 262
Query: 191 GR------YGS-----KFPVGEVTCLDS---EDLPLL 213
GR +G+ FP G V +++ E LP L
Sbjct: 263 GRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 299
>gi|421849307|ref|ZP_16282289.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371459945|dbj|GAB27492.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 862
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G PL++ +++ D+++ + R
Sbjct: 108 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIR----DIEIDTRPR 163
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + C++V G L P TR
Sbjct: 164 LSNLT--YTGHIRLSRLPARTAIVAFSMAEVYAIAELIR-RKRGGCAVVMGQLSPRTRNA 220
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QIAGRA
Sbjct: 221 QVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICKFDGYRNRLLTPAEAAQIAGRA 278
Query: 191 GR------YGS-----KFPVGEVTCLDS---EDLPLL 213
GR +G+ FP G V +++ E LP L
Sbjct: 279 GRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 315
>gi|294084643|ref|YP_003551401.1| helicase domain-containing protein [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664216|gb|ADE39317.1| helicase domain protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 991
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 13 IDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
+DEIQ+ G + RG FT R + E G A PL++Q+L D K+ +R+
Sbjct: 110 VDEIQLAGDRERGHVFTDRIIHARGLFETMFMGAETAAPLLRQLLP----DAKIDYRQRM 165
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L + P + + +V FS +Y++ + I R + +IV G L P TR Q
Sbjct: 166 SKLS-YSGP-KKLTRLPRRAAVVAFSAADVYQIAEFIR-RQRGGAAIVMGRLSPRTRNAQ 222
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
+ + E D L+A+DAIGMGLNL++S + + K+DG ++R LT E+ QIAGRAG
Sbjct: 223 VELYQNG--EVDFLIATDAIGMGLNLDLSHVSLAADVKYDGRKMRKLTASEMAQIAGRAG 280
Query: 192 RY 193
R+
Sbjct: 281 RH 282
>gi|254505193|ref|ZP_05117344.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
gi|222441264|gb|EEE47943.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
Length = 998
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 25/279 (8%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G A PL+++++ + V + R
Sbjct: 83 AIDEVQLAGNLDRGHVFTDRILNLRGRSETLLLGSATARPLLEKLIP----GLNVVTRPR 138
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L S + IV FS +Y + + + R + ++V GSL P TR
Sbjct: 139 MSILSYAGSK--KVSRLPARSAIVAFSSDEVYSIAELLR-RQRGGAAVVLGSLSPRTRNA 195
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DAIGMGLNL++ I F+ +K+DG + R LT E+ QIAGRA
Sbjct: 196 QVDLFQNG--DVDHLVATDAIGMGLNLDVHHIAFAGNRKYDGYQYRQLTPSEMGQIAGRA 253
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE----------SAGLFPNFDLIY 237
GR+ G+ G V LD + + + + +L+ + L + DL
Sbjct: 254 GRHTKDGTFGVSGRVDPLDDDLIEQIESHHFDSLKVLQWRNSALDFSSTNALRRSLDLPP 313
Query: 238 MYSRL--HPDSSLYGILEHFLENAKLSENYFFANCEEVL 274
L P LEH L ++ +S+ AN E+L
Sbjct: 314 REDGLARAPTGDDIKALEHLLRDSAISDMAKGANAVELL 352
>gi|114326980|ref|YP_744136.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114315154|gb|ABI61214.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 864
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 13 IDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYE 69
+DEIQ+ RG FT LL G+ E G PL++ ++ ++++
Sbjct: 106 VDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLGAETIRPLLKSLVP----QAEIETRP 159
Query: 70 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 129
RLS L + + IV FS +Y + + I R K C++V G L P TR
Sbjct: 160 RLSEL--RHAGAAKLGRLPPRSAIVAFSAGDVYAIAELIRRR-KGGCAVVMGRLSPRTRN 216
Query: 130 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189
Q + D E D LVA+DAIGMGLN+++ + F+ + KFDG R L PE+ QIAGR
Sbjct: 217 AQVALYQD--KEVDFLVATDAIGMGLNMDVDHVAFARLSKFDGHRARRLAAPEIAQIAGR 274
Query: 190 AGR 192
AGR
Sbjct: 275 AGR 277
>gi|154246580|ref|YP_001417538.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154160665|gb|ABS67881.1| helicase domain protein [Xanthobacter autotrophicus Py2]
Length = 1101
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 13/231 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT +L +E L G PLI+++L V V
Sbjct: 99 DVSFVAIDEIQLATDLDRGHVFTERMLNRRGRHETLLLGSATMRPLIEKLLP----GVNV 154
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
RLS L S + IV FS +Y + + I R + ++V G+L P
Sbjct: 155 VVRPRLSTLTFAGEK--KISRLPRRSAIVAFSAEEVYSIAEFIR-RQRGGAAVVMGALSP 211
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + S + D LVA+DAIGMGLNL++ + F++ +KFDG + R L E+ Q
Sbjct: 212 RTRNAQVELYQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDRKFDGWQFRKLNASEMAQ 269
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 233
IAGRAGR G+ G D E + L + + + + +L+ P+F
Sbjct: 270 IAGRAGRATRDGTFGTTGRCPPFDEELVGRLEEHVFDTAKVLQWRNAVPDF 320
>gi|115378380|ref|ZP_01465543.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|310823354|ref|YP_003955712.1| helicase [Stigmatella aurantiaca DW4/3-1]
gi|115364615|gb|EAU63687.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|309396426|gb|ADO73885.1| helicase [Stigmatella aurantiaca DW4/3-1]
Length = 819
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ + RG FT LL E G P++Q + + S
Sbjct: 94 DFLAVDEIQLAAHRERGHVFTDRLLHARGLRETWFLGADTMRPMLQAL-------IPHAS 146
Query: 68 YERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
+R + L L+ G S ++ +V FS +Y L +A+ R + ++V G+L P
Sbjct: 147 LKRATRLSQLSYAGGRSLKSLPPRSAVVAFSADRVYELAEALR-RLRGGVAVVLGALSPR 205
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E LVA+DAIGMGLNL+++ + F+ + KFDG E RDL E+ QI
Sbjct: 206 TRNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVAFAALSKFDGAEQRDLFPDELAQI 263
Query: 187 AGRAGRYGSKFPVGEVTCL 205
AGRAGR+ + G + L
Sbjct: 264 AGRAGRHLNDGSFGTLNTL 282
>gi|307943596|ref|ZP_07658940.1| putative helicase [Roseibium sp. TrichSKD4]
gi|307773226|gb|EFO32443.1| putative helicase [Roseibium sp. TrichSKD4]
Length = 1039
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G PL+++++ + V + R
Sbjct: 127 AIDEVQLAGNLDRGHVFTDRVLNLRGQSETLLLGSMTVRPLLEKLIP----GLNVVTRPR 182
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L S + IV FS +Y + + I R + ++V GSL P TR
Sbjct: 183 MSVLTYAGSK--KVSRLPARSAIVAFSSDEVYGIAELIR-RQRGGAAVVLGSLSPRTRNA 239
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DAIGMGLNL++ I F+ +K+DG + R LT E+ QIAGRA
Sbjct: 240 QVELFQNG--DVDHLVATDAIGMGLNLDVDHIAFAGTRKYDGYQYRQLTPAEMGQIAGRA 297
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+ +
Sbjct: 298 GRHTRDGTFGVTGRVDPPDDELVER 322
>gi|421589710|ref|ZP_16034815.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
gi|403705278|gb|EJZ20914.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
Length = 701
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 13 IDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
IDE+Q+ G RG FT +L + +E L G P++QQ+L + V RL
Sbjct: 101 IDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAATMRPILQQLLP----GITVVERPRL 156
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L + + IV FS +Y + + I R + ++V G+L P TR Q
Sbjct: 157 SHL--FYGGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNSQ 213
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
+ E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRAG
Sbjct: 214 VALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPAELGQIAGRAG 271
Query: 192 RY---GSKFPVGEVTCLDSE 208
R+ G+ G+V+ D E
Sbjct: 272 RHVRDGTFGVTGQVSPFDEE 291
>gi|296115141|ref|ZP_06833782.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978242|gb|EFG84979.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 903
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL+++++ ++++ R
Sbjct: 128 AVDEIQLCADPDRGHIFTDRLLHARGQVETMFLGADTIRPLLRRLVP----GIEIEHRPR 183
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + C+IV G L P TR
Sbjct: 184 LSHLAYTGA--SKLTRLPPRSAIVAFSAAEVYAIAELIRRR-RGGCAIVMGQLSPRTRNA 240
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++++ + F+++ KFDG +R LT E+ Q+AGRA
Sbjct: 241 QVALYQN--KEVDYLVATDAIGMGLNMDVNHVAFASLSKFDGTRMRPLTPAEIAQVAGRA 298
Query: 191 GR 192
GR
Sbjct: 299 GR 300
>gi|338741219|ref|YP_004678181.1| ATP-dependent RNA and DNA helicase [Hyphomicrobium sp. MC1]
gi|337761782|emb|CCB67617.1| conserved protein of unknown function; putative ATP-dependent RNA
and DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Hyphomicrobium sp. MC1]
Length = 1071
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV--- 63
D D IDEIQ+ G RG FT LL H G + L Q ++ D+
Sbjct: 92 DVDFLAIDEIQLCGDPERGHVFTDRLL-------HARGRSETLLLGAQTMRDAISDLIPG 144
Query: 64 -KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
S RLS L + + IV FS +Y L + I R + ++V G+
Sbjct: 145 ANFISRPRLSKLTYSGEK--KITRLPARSAIVAFSAQEVYALAELIR-RQRGGAAVVLGA 201
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q + EF LVA+DAIGMGLNL++ + FS ++KFDG R+LT E
Sbjct: 202 LSPRTRNAQVALYQSGDVEF--LVATDAIGMGLNLDVDHVAFSALRKFDGYNHRNLTPGE 259
Query: 183 VKQIAGRAGRY---GSKFPVGEVTCLDSE 208
+ QIAGRAGR+ G+ G LD++
Sbjct: 260 IGQIAGRAGRHMNDGTFGVTGGAEALDAD 288
>gi|304321952|ref|YP_003855595.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
gi|303300854|gb|ADM10453.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
Length = 1017
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG FT R L +E G PL+++++ DD+ S +R
Sbjct: 107 AIDEVQLAADPERGRVFTDRLLHARGQHETLFLGSDTMRPLLKRLI----DDIDFVSRDR 162
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + IV FS ++Y + + + R + ++V G+L P TR
Sbjct: 163 FSNLT--FAGHKKVTRLPRRSAIVAFSADSVYSIAELVR-RQRGGAAVVMGALSPRTRNA 219
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
QA +N+ E D LVA+DAIGMGLN++I + F+ KFDG + R L EV QIAGRA
Sbjct: 220 QAALYNEG--EVDYLVATDAIGMGLNMDIDHVAFAGASKFDGRQSRRLLPAEVGQIAGRA 277
Query: 191 GRY 193
GR+
Sbjct: 278 GRH 280
>gi|70944747|ref|XP_742271.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521155|emb|CAH82418.1| hypothetical protein PC000387.05.0 [Plasmodium chabaudi chabaudi]
Length = 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YDCA+IDEIQM+ RG+++T L+ + E++LCG V LI+++ +
Sbjct: 298 MTPLNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILH 357
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
D V ++ ++RL+ L L + +++TG CI++FSR+ I LK +E K + ++Y
Sbjct: 358 DQVIIKRFKRLNKL-KLEKNIQPLDDVKTG-CIISFSRNNIMLLKNKLEKLNKRV-FVIY 414
Query: 121 GSLPPETRTRQATRFN 136
G+LPPE++ +Q FN
Sbjct: 415 GTLPPESKKKQIELFN 430
>gi|393770819|ref|ZP_10359296.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
gi|392723717|gb|EIZ81105.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
Length = 851
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE Q+ + RG FT R L E + G P+++ ++ ++ + R
Sbjct: 103 ALDEAQLAADRERGHVFTDRLLHARGREETMILGSATLEPMVRALV----PGAEIVTRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S + IV FS +Y + + + R + ++V G+L P+TR
Sbjct: 159 FSTLT--HAGAKKLSRVPPRSAIVAFSAEQVYAIAEMLR-RFRGGAAVVMGALSPQTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL+I + F+ + KFDGV R LT E+ QIAGRA
Sbjct: 216 QVALYQ--SGEVDYLVATDAIGMGLNLDIEHVAFAGLSKFDGVRQRRLTTAEMAQIAGRA 273
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G +T D
Sbjct: 274 GRHQKDGSFGTLTGSGGHD 292
>gi|399039778|ref|ZP_10735287.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398062191|gb|EJL53972.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 1012
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G P++QQ+L + V R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAGTMRPILQQLLP----GITVVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSQL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNSAELGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V D E
Sbjct: 271 GRHVRDGTFGVTGQVDPFDEE 291
>gi|359399021|ref|ZP_09192029.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
gi|357599566|gb|EHJ61276.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
Length = 867
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE Q+ + RG FT R L E + G P+++ ++ ++ + R
Sbjct: 116 AIDEAQLGADRERGHVFTDRLLHARGREETMILGSSTLEPMVRALVP----RAEIVTRPR 171
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S I IV FS +Y + + + R + ++V G+L P+TR
Sbjct: 172 FSTLS--HAGAKKLSRIPPRSAIVAFSTEQVYAIAEMLR-RFRGGAAVVMGALSPQTRNA 228
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL++ + F+ + KFDGV R LT E+ QIAGRA
Sbjct: 229 QVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGLSKFDGVRHRRLTTSEMAQIAGRA 286
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G +T + D
Sbjct: 287 GRHQKDGTFGTLTGSGTHD 305
>gi|357974505|ref|ZP_09138476.1| helicase domain-containing protein [Sphingomonas sp. KC8]
Length = 847
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
++ +DE Q+ RG FT R L +E + G P+++Q++ D ++
Sbjct: 89 EFAFVALDEAQLGADPERGHVFTDRLLRARGRDETMILGSETLRPMLRQLVP----DAEI 144
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
R S L S + IV FS +Y + + + R + ++V G+L P
Sbjct: 145 IGRPRFSTLTYAGP--AKLSRLPPRSVIVAFSSEEVYAVAEMLR-RLRGGAAVVMGALSP 201
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + E D LVA+DAIGMGLN++++ + F++++KFDG R LTV E+ Q
Sbjct: 202 RTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFASLRKFDGKRARRLTVSEMAQ 259
Query: 186 IAGRAGRY 193
IAGRAGR+
Sbjct: 260 IAGRAGRH 267
>gi|284990781|ref|YP_003409335.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284064026|gb|ADB74964.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
Length = 550
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 4/182 (2%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
V+DE + RG ++ R LL E+ + A+P+++ L DV+V + RL
Sbjct: 91 VLDEAHWVTDPDRGHTWARLLLTGEYREVRVISAAEALPVLEP-LVADVADVEVVHHGRL 149
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L L P+ S ++ +V FSR A+Y +E+ ++YG+LPP TR +
Sbjct: 150 SRLDVLRAPV-RPSGVRPRTLVVAFSRKAVYATAAVLEAVRPGRTGVLYGALPPATRRQV 208
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
RF E DVLV +D IG G+N+ + ++F+ KFDGVE R L E QIAGRAG
Sbjct: 209 IDRFT--RGELDVLVTTDVIGHGINVPAATVLFAETTKFDGVERRPLRTWETAQIAGRAG 266
Query: 192 RY 193
RY
Sbjct: 267 RY 268
>gi|334139625|ref|YP_004532819.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
gi|333937643|emb|CCA91001.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
Length = 854
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE Q+ + RG FT R L E + G P+++ ++ ++ + R
Sbjct: 103 AIDEAQLGADRERGHVFTDRLLHARGREETMILGSSTLEPMVRALVP----RAEIVTRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S I IV FS +Y + + + R + ++V G+L P+TR
Sbjct: 159 FSTLS--HAGAKKLSRIPPRSAIVAFSTEQVYAIAEMLR-RFRGGAAVVMGALSPQTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL++ + F+ + KFDGV R LT E+ QIAGRA
Sbjct: 216 QVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGLSKFDGVRHRRLTTSEMAQIAGRA 273
Query: 191 GRYGSKFPVGEVTCLDSED 209
GR+ G +T + D
Sbjct: 274 GRHQKDGTFGTLTGSGTHD 292
>gi|85709782|ref|ZP_01040847.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
gi|85688492|gb|EAQ28496.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
Length = 889
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE Q+ RG FT LL E + G PL++Q++ ++ R
Sbjct: 99 AIDEAQIGADPERGHIFTDRLLNARGREETMILGSATLEPLVRQLIP----GAEMVERPR 154
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + S + +V FS +Y + +A+ R + ++V G+L PETR +
Sbjct: 155 FSTLT--HAGSAKLSRLPRRSAVVAFSSEQVYAMAEALR-RFRGGAAVVMGALSPETRNK 211
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S E D +VA+DAIGMGLNL++ + F+ + KFDG R LT E+ QIAGRA
Sbjct: 212 QVELFQ--SGEVDYIVATDAIGMGLNLDLQHVAFAALTKFDGRRKRRLTPSEMAQIAGRA 269
Query: 191 GRYGSKFPVGEVT 203
GR+ + G +T
Sbjct: 270 GRHQTDGSFGVLT 282
>gi|424897498|ref|ZP_18321072.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181725|gb|EJC81764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 1104
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + V R
Sbjct: 123 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMQPILQQLLP----GITVVERPR 178
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 179 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 235
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 236 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 293
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 294 GRHVRDGTFGVTGQVSPFDEE 314
>gi|424886868|ref|ZP_18310476.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176219|gb|EJC76261.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 1104
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + V R
Sbjct: 123 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAGTMQPILQQLLP----GITVVERPR 178
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 179 LSHL--FYAGQKKITRLPQHSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 235
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 236 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 293
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 294 GRHVRDGTFGVTGQVSPFDEE 314
>gi|209551388|ref|YP_002283305.1| helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537144|gb|ACI57079.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 1087
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMQPILQQLLP----GITIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDEE 291
>gi|383455668|ref|YP_005369657.1| putative helicase [Corallococcus coralloides DSM 2259]
gi|380733411|gb|AFE09413.1| putative helicase [Corallococcus coralloides DSM 2259]
Length = 805
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 10/200 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ D +DEIQ+ + RG FT R L E G P++Q ++ +
Sbjct: 92 EVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMRPMVQALI----PHASM 147
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L S ++ +V FS +Y L +++ R + ++V G+L P
Sbjct: 148 KRAMRLSQL--RYAGRRSLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLGALSP 204
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + S E LVA+DAIGMGLNL+++ + F+T+ K+DG E RDL E+ Q
Sbjct: 205 RTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFATLSKYDGAEQRDLYPDELAQ 262
Query: 186 IAGRAGRYGSKFPVGEVTCL 205
IAGRAGR+ + G + L
Sbjct: 263 IAGRAGRHLNDGSFGALNTL 282
>gi|424916339|ref|ZP_18339703.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852515|gb|EJB05036.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 1110
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + + R
Sbjct: 123 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMQPILQQLLP----GITIVERPR 178
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 179 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 235
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 236 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 293
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 294 GRHVRDGTFGVTGQVSPFDEE 314
>gi|300024666|ref|YP_003757277.1| helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299526487|gb|ADJ24956.1| helicase domain protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 1059
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV--- 63
D D IDEIQ+ G RG FT LL H G + L Q ++ D+
Sbjct: 92 DVDFLAIDEIQLAGDPERGHVFTDRLL-------HARGRSETLLLGAQTMREAISDLIPG 144
Query: 64 -KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
S RLS L + + I+ FS +Y L + I R + ++V G+
Sbjct: 145 ANFISRPRLSKLTYTGEK--KITRLPARSAIIAFSAQEVYALAELIR-RQRGGAAVVLGA 201
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q + EF +VA+DAIGMGLNL+I + FS ++KFDG R+LT E
Sbjct: 202 LSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLDIDHVAFSALRKFDGQNHRNLTPGE 259
Query: 183 VKQIAGRAGRY 193
+ QIAGRAGR+
Sbjct: 260 IGQIAGRAGRH 270
>gi|332186925|ref|ZP_08388666.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
gi|332012935|gb|EGI54999.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
Length = 831
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 12/195 (6%)
Query: 2 ADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQV 58
A+ + D D A +DE Q+ RG FT R L +E + G A P+I+ ++
Sbjct: 81 AESMPDRDVAFVALDEAQLGADLERGHVFTDRLLHARGRDETMILGSEALKPMIRALVP- 139
Query: 59 TGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
D ++ + R S L S + IV FS +Y + + + R + ++
Sbjct: 140 ---DAEIVARPRFSTLTYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR-RLRGGAAV 193
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F+ + KFDG R L
Sbjct: 194 VMGALSPRTRNAQVEMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFAGLHKFDGRRRRRL 251
Query: 179 TVPEVKQIAGRAGRY 193
TV E+ QIAGRAGR+
Sbjct: 252 TVAEMAQIAGRAGRH 266
>gi|220921713|ref|YP_002497014.1| helicase domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219946319|gb|ACL56711.1| helicase domain protein [Methylobacterium nodulans ORS 2060]
Length = 1135
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 25/227 (11%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQS 67
D +DE+Q+ RG +FT LL E L G PL+Q ++ V + +
Sbjct: 106 DFVAVDEVQLGADMDRGHTFTDRLLHQRGREETLLIGSATIAPLVQALIP----GVHITT 161
Query: 68 YERLSPLVPLNVPLGSF------SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
RLS L SF S + +V FS +Y + + + R + ++V G
Sbjct: 162 RPRLSRL--------SFAGEKRISRLPHRTAVVAFSAEEVYAIAELLR-RQRGGAAVVLG 212
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
+L P TR Q + S + D LVA+DA+GMGLNL++ + F++ +KFDG R LT
Sbjct: 213 ALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFASNRKFDGTRFRGLTPA 270
Query: 182 EVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
E+ QIAGRAGR+ G+ G + E + L EP+ +L+
Sbjct: 271 EMAQIAGRAGRHLRDGTFGSTGRCPPFEPEMVEALESHSFEPTRLLQ 317
>gi|163792657|ref|ZP_02186634.1| Helicase-like protein [alpha proteobacterium BAL199]
gi|159182362|gb|EDP66871.1| Helicase-like protein [alpha proteobacterium BAL199]
Length = 936
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 16/186 (8%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT R + A E G PL+Q+++ + +V++ R
Sbjct: 95 AIDEIQLAGDPERGHVFTDRLMHARGAEETMFLGADTIRPLLQRLVP----EARVETRPR 150
Query: 71 LSPLV---PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
LS L P + + + IV FS +Y L + I R + ++V G+L P T
Sbjct: 151 LSKLTYAGPCKI-----TRLPRRSAIVAFSAADVYALAE-IVRRQRGGAAVVMGALSPRT 204
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F + E D L+A+DAIGMGLN+++ + F+ KFDG R LT E+ QIA
Sbjct: 205 RNAQVKLFQE--GEVDYLIATDAIGMGLNMDVDHVAFAEDAKFDGRMPRKLTPAELAQIA 262
Query: 188 GRAGRY 193
GRAGR+
Sbjct: 263 GRAGRH 268
>gi|340027356|ref|ZP_08663419.1| helicase domain-containing protein [Paracoccus sp. TRP]
Length = 969
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 96/194 (49%), Gaps = 12/194 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVT 59
M +V +D+ IDEIQ+ RG FT LL + +E L G P I ++ T
Sbjct: 82 MPEVGADF--VAIDEIQLCADPERGHVFTDRLLHMRGLHETLLLGSDTMRPAIAALVPQT 139
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+ ER S L S + IV FS +Y + I R K C++V
Sbjct: 140 ----QFMRRERFSTLSWAGSK--KISRMPPRSAIVCFSVDEVYATAELIR-RQKGGCAVV 192
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q + + E D LVA+DAIGMGLNL+I I FS +KFDG R L
Sbjct: 193 MGALSPRTRNAQVAMYQNG--EVDYLVATDAIGMGLNLDIRHIAFSATEKFDGRRFRQLF 250
Query: 180 VPEVKQIAGRAGRY 193
E+ QIAGRAGR+
Sbjct: 251 PHELGQIAGRAGRH 264
>gi|409439485|ref|ZP_11266534.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
gi|408748861|emb|CCM77715.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
Length = 1011
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT LL + +E L G P++QQ+L + V R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRLLHLRGRDETLLLGAGTMRPILQQLLP----GITVVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPAELGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G G+V D E
Sbjct: 271 GRHIRDGMFGVTGQVDPFDQE 291
>gi|296532714|ref|ZP_06895401.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296266959|gb|EFH12897.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 845
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G PL+Q+++ +V++
Sbjct: 111 AVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGAETIRPLLQRLVP----QAEVETR 164
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLS L + + +V FS +Y + +AI R + C++V G L P TR
Sbjct: 165 PRLSEL--RYAGPAKLTRLPPRSAVVAFSAAEVYAIAEAIRRR-RGGCAVVMGRLSPRTR 221
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + + E D LVA+DAIGMGLN+++ + F++++KFDG R LT E QIAG
Sbjct: 222 NAQVALYQN--REVDFLVATDAIGMGLNMDVDHVAFASLQKFDGHRPRILTAQEAAQIAG 279
Query: 189 RAGR 192
RAGR
Sbjct: 280 RAGR 283
>gi|378827873|ref|YP_005190605.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
gi|365180925|emb|CCE97780.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
Length = 1007
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT LL + E L G P+++Q+L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRLLHLRGRGETLLLGAATMRPILEQLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--LYAGSKKITRLPHRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D + L+H+
Sbjct: 269 GRHIRDGTFGVTGRVDPFEDELVHR 293
>gi|365854506|ref|ZP_09394578.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
gi|363720047|gb|EHM03339.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
Length = 846
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G PL+Q+++ ++++
Sbjct: 103 AVDEIQLCADPDRGHIFTDRLLHARGLV--ETMFLGAETIRPLLQRLVP----QAEIETR 156
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLS L + + +V FS +Y + +AI R + C++V G L P TR
Sbjct: 157 PRLSQLEYAGP--AKLTRLPPRSAVVAFSAGEVYAIAEAIRRR-RGGCAVVMGRLSPRTR 213
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + + E D LVA+DAIGMGLN+++ + F++++KFDG R LT E QIAG
Sbjct: 214 NAQVALYQN--REVDFLVATDAIGMGLNMDVDHVAFASLQKFDGHRPRPLTAQEAAQIAG 271
Query: 189 RAGR 192
RAGR
Sbjct: 272 RAGR 275
>gi|334317959|ref|YP_004550578.1| helicase domain-containing protein [Sinorhizobium meliloti AK83]
gi|334096953|gb|AEG54964.1| helicase domain protein [Sinorhizobium meliloti AK83]
Length = 1023
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E+ L G P+++ +L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRILHLRGRGEMLLLGAATMRPILEYLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 MSQL--LYAGSKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 206 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 263
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+H+
Sbjct: 264 GRHVRDGTFGVTGRVDPFDEDLVHR 288
>gi|418938946|ref|ZP_13492397.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
gi|375054430|gb|EHS50787.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
Length = 1039
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 129/290 (44%), Gaps = 17/290 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT LL + +E L G ++ Q+L + + R
Sbjct: 98 AIDEIQLAGDLERGHIFTDRLLHLRGRDETLLLGSATMKQILIQLLP----GITIVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 LSQL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 211 QVGLYQEGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGFQFRNLNAGELGQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSS 247
GR+ G+ G V D E + L +P +L+ ++ + R +
Sbjct: 269 GRHLKDGTFGVTGRVDPFDDELVERLEAHQFDPVKVLQWRTSHFDYSSVAALQRSLDTAP 328
Query: 248 LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 297
G L L F A EV+ +A P R+ + + C P
Sbjct: 329 KVGGLTRALPAIDQQALEFLARYPEVIDLAN----RPERVEKLWEACALP 374
>gi|241206830|ref|YP_002977926.1| helicase domain-containing protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860720|gb|ACS58387.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 1082
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQQLLP----GITIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQVAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDDE 291
>gi|154252150|ref|YP_001412974.1| helicase domain-containing protein [Parvibaculum lavamentivorans
DS-1]
gi|154156100|gb|ABS63317.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 997
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ D IDEIQ+ + RG +FT R L +E + G LIQ++L D
Sbjct: 103 EVDFLAIDEIQLAADRERGHTFTDRLLRARGHSETMMLGSETVRGLIQKLLP----DTLF 158
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S R S L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 159 ISRPRFSELSWTGS--KKITRLPRRSAIVAFSADQVYAIAELIR-RQRGGAAVVMGALSP 215
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + S + D LVA+DAIGMGLN+++ + F++ +KFDG R L V E+ Q
Sbjct: 216 RTRNAQVALYQ--SGDVDFLVATDAIGMGLNMDVDHVAFASTEKFDGRLHRPLHVAELAQ 273
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
IAGRAGR+ G+ GE L E + + EP
Sbjct: 274 IAGRAGRHMNNGTFGVTGEAGPLSDEIVSRIENHQFEP 311
>gi|418063152|ref|ZP_12700866.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373561366|gb|EHP87602.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 837
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT R L E L G +PL+Q ++ V
Sbjct: 93 DLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSSTMLPLVQALIP----GV 148
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 149 QTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 205
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R L+ E+
Sbjct: 206 SPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLSPAEM 263
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G + E + L EP ML+
Sbjct: 264 GQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ 308
>gi|424872858|ref|ZP_18296520.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393168559|gb|EJC68606.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 1082
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQQLLP----GITIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQVAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDDE 291
>gi|126729322|ref|ZP_01745136.1| helicase, putative [Sagittula stellata E-37]
gi|126710312|gb|EBA09364.1| helicase, putative [Sagittula stellata E-37]
Length = 995
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL + L L D P+ Q + V+
Sbjct: 89 DLVAIDEIQLCADPERGHVFTDRLLRMRGTHETLFLGSDTMRGPIAQLV-----PGVEFV 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S LV S +Q IV FS +Y + + ++ R K ++V G+L P
Sbjct: 144 RRERMSQLVYTGSK--KISRLQPRTAIVGFSVDNVYAIAELLK-RQKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ QI
Sbjct: 201 TRNAQVELYQN--REVDYLVATDAIGMGLNLDIDHVAFSSTTKFDGRRMRPLMPNELAQI 258
Query: 187 AGRAGRY---GSKFPVGEVTCLDSEDL 210
AGRAGR G+ GE + L SED+
Sbjct: 259 AGRAGRGMSDGTFGVTGEASPL-SEDV 284
>gi|413918545|gb|AFW58477.1| hypothetical protein ZEAMMB73_372211 [Zea mays]
Length = 161
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 212
MGLNLNI R++F T+ K+DG ++ + +VKQIAGRAGR S +P G T DL
Sbjct: 1 MGLNLNIRRVVFYTLMKYDGEKMVSVPASQVKQIAGRAGRRSSVYPHGLATTF-MFDLDY 59
Query: 213 LHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEE 272
L K L EP E GLFP+F+ + M++ P+ + +L+ F + ++ + YF +
Sbjct: 60 LTKCLDEPVKEAEKVGLFPSFEQLEMFATHFPELAFNNLLDKFRDTCRIDDTYFMCQHDS 119
Query: 273 VLKVATVIDQLP-LRLHEKYLFCI 295
+ KVA++I+ + L L + Y+F +
Sbjct: 120 MKKVASMIESVQGLSLKDHYIFLL 143
>gi|116254344|ref|YP_770182.1| hypothetical protein RL4618 [Rhizobium leguminosarum bv. viciae
3841]
gi|115258992|emb|CAK10101.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1090
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++QQ+L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQQLLP----GITIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQVAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDDE 291
>gi|240141242|ref|YP_002965722.1| hypothetical protein MexAM1_META1p4834 [Methylobacterium extorquens
AM1]
gi|240011219|gb|ACS42445.1| conserved hypothetical protein with putative ATP-dependent RNA and
DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Methylobacterium extorquens AM1]
Length = 1131
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 108/225 (48%), Gaps = 15/225 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D+D A IDEIQ+ RG FT R L E L G +PL+Q ++ V
Sbjct: 93 DFDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSSTMLPLVQALIP----GV 148
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 149 QTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 205
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R L+ E+
Sbjct: 206 SPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLSPAEM 263
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G + E + L EP ML+
Sbjct: 264 GQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ 308
>gi|170742911|ref|YP_001771566.1| helicase domain-containing protein [Methylobacterium sp. 4-46]
gi|168197185|gb|ACA19132.1| helicase domain protein [Methylobacterium sp. 4-46]
Length = 1154
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG +FT LL E L G PL+Q ++ V V +
Sbjct: 97 DFVAVDEIQLGADMDRGHTFTDRLLHQRGREETLLIGSGTMGPLVQALIP----GVHVTT 152
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S + IV FS +Y + + + R + ++V G+L P T
Sbjct: 153 RPRLSQLGFAGEK--RLSRLPHRTAIVAFSAEEVYAIAELLR-RQRGGAAVVLGALSPRT 209
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S + D LVA+DAIGMGLNL++ + F++ +KFDG R L+ E+ QIA
Sbjct: 210 RNAQVELYQ--SGDVDYLVATDAIGMGLNLDVDHVAFASNRKFDGTRFRGLSPAEMAQIA 267
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GRAGR+ G+ G + E + L EP+ +L+ + N DL +
Sbjct: 268 GRAGRHLRDGTFGSTGRCPPFEPEMVEALESHSFEPTRVLQ----WRNPDLDF 316
>gi|395785110|ref|ZP_10464844.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|423717989|ref|ZP_17692179.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
gi|395425622|gb|EJF91783.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|395426422|gb|EJF92549.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
Length = 967
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG FT +L + +E L G +Q ILQ + + + R
Sbjct: 98 AIDEVQLSDDLERGHIFTDRILHLRGQHETMLLG----AATMQGILQKLLPGLTIVTRPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + + IV FS +Y + + I+ R + ++V G+L P TR
Sbjct: 154 FSHL--FYTGSKKITRLPSRSAIVAFSSEEVYSIAEFIK-RQRGGAAVVMGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D LVASDAIGMGLNL++ + F+ +KFDG + RDL E+ QIAGRA
Sbjct: 211 QVALYQ--SGDVDYLVASDAIGMGLNLDVDHVAFAQTRKFDGYQFRDLKPAEMGQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSEDL 210
GRY G+ G V L+ EDL
Sbjct: 269 GRYMRDGTFGVTGRVPPLE-EDL 290
>gi|440228414|ref|YP_007335505.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
gi|440039925|gb|AGB72959.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
Length = 1045
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT LL + +E L G P+++Q+L + V R
Sbjct: 104 AIDEVQLAGDLERGHIFTDRLLHLRGRDETLLLGAGTMRPILEQLLP----GITVLERPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 160 LSHL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 217 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 274
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V D E
Sbjct: 275 GRHLKDGTFGVTGQVDPFDDE 295
>gi|170750104|ref|YP_001756364.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656626|gb|ACB25681.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 1081
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT LL + E L G +PL+Q ++ +V
Sbjct: 60 DLDVAFVAIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTMLPLVQDLIP----NV 115
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 116 HTTTRPRLSQLTFAGEK--RLSRLPRRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 172
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D LVA+DA+GMGLNL++ + F+ K+DG R LT E+
Sbjct: 173 SPRTRNAQVEMYQ--AGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLTPAEM 230
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 231 GQIAGRAGRH 240
>gi|312114757|ref|YP_004012353.1| helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311219886|gb|ADP71254.1| helicase domain protein [Rhodomicrobium vannielii ATCC 17100]
Length = 1147
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 13/234 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ D +DEIQ+ RG FT R +E L G I++++
Sbjct: 98 EVDFLAVDEIQLAADPDRGHVFTDRLFHSRGTSETLLLGAATMTDAIRELIP----GANF 153
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +Q+ IV FS + +Y + + I R + ++V G+L P
Sbjct: 154 IARPRLSKLTYSG--QKKITRLQSRSAIVAFSANDVYAIAELIR-RQRGGAAVVLGALSP 210
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D +VA+DAIGMGLNL++ + F+ +KFDG RDLT E+ Q
Sbjct: 211 RTRNAQVALYQNG--DVDFIVATDAIGMGLNLDVDHVAFAGTRKFDGRNHRDLTPAEIAQ 268
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
IAGRAGR+ G+ +V D E + L EP+ +L+ +FD +
Sbjct: 269 IAGRAGRHLNDGTFGVTADVEPFDQEVVNKLENHDFEPAKLLQWRNTRLDFDSV 322
>gi|15967013|ref|NP_387366.1| hypothetical protein SMc03877 [Sinorhizobium meliloti 1021]
gi|15076286|emb|CAC47839.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
Length = 926
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++ +L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRILHLRGRGETLLLGAATMRPILEYLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--LYAGSKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+H+
Sbjct: 269 GRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|418053804|ref|ZP_12691860.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
gi|353211429|gb|EHB76829.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
Length = 1017
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV--- 63
D D IDEIQ+ G RG FT LL H G + L Q ++ D+
Sbjct: 92 DVDFLAIDEIQLCGDPERGHVFTDRLL-------HARGRSETLLLGAQTMRDAISDLIPG 144
Query: 64 -KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 122
S RLS L + + I+ FS +Y L + I R + ++V G+
Sbjct: 145 ANFISRPRLSKLTYTGEK--KITRLPARSAIIAFSAQDVYALAELIR-RQRGGAAVVLGA 201
Query: 123 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 182
L P TR Q + EF +VA+DAIGMGLNL+I + FS ++KFDG R+LT E
Sbjct: 202 LSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLDIDHVAFSALRKFDGQNHRNLTPGE 259
Query: 183 VKQIAGRAGRY 193
+ QIAGRAGR+
Sbjct: 260 IGQIAGRAGRH 270
>gi|297180167|gb|ADI16389.1| superfamily II DNA and RNA helicases [uncultured bacterium
HF130_12L15]
Length = 1179
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G ++Q++L+ V V + R
Sbjct: 103 AIDEVQLAGDLERGHVFTDRILHLRGRDETLLLGAATMAGILQKLLK----GVSVVTRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 159 MSHLAYAGSK--KITRLPRRSAIVAFSADEVYGIAELIR-RQRGGAAVVLGALSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + R L+ E+ QIAGRA
Sbjct: 216 QVEIYQ--SGDVDFLVATDAIGMGLNLDVDHVGFAQNRKFDGFQYRQLSAAELGQIAGRA 273
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V D E
Sbjct: 274 GRHMRDGTFGVTGQVDPFDDE 294
>gi|418404547|ref|ZP_12978002.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
gi|359501510|gb|EHK74117.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
Length = 1024
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++ +L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRILHLRGRGETLLLGAATMRPILEYLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S LV + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQLVYAGSK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+H+
Sbjct: 269 GRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|87198147|ref|YP_495404.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
gi|87133828|gb|ABD24570.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
Length = 855
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DE Q+ RG FT L+ E L G P+++ ++ + +V
Sbjct: 105 DLAFVALDEAQLSADPERGHVFTDRLMHTRGREETMLLGSSTLEPMVKALVP----EAEV 160
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ R S L +V S I IV FS +Y + + + R + ++V G+L P
Sbjct: 161 VTRPRFSTLT--HVGAKKLSRIPPRSAIVAFSAEQVYVMAEMLR-RFRGGAAVVMGALSP 217
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
+TR Q + + E D LVA+DAIGMGLNL++ + F+ + KFDG R LT E+ Q
Sbjct: 218 QTRNAQVAMYQ--AGEVDYLVATDAIGMGLNLDVHHVAFAGLSKFDGHRQRRLTTAEMAQ 275
Query: 186 IAGRAGRYGSKFPVGEVTCLDSED 209
IAGRAGR+ G + + D
Sbjct: 276 IAGRAGRHQRDGTFGALAGMGGHD 299
>gi|119384565|ref|YP_915621.1| helicase [Paracoccus denitrificans PD1222]
gi|119374332|gb|ABL69925.1| helicase domain protein [Paracoccus denitrificans PD1222]
Length = 975
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVT 59
M +V +D+ IDEIQ+ RG FT LL + +E L G P I ++
Sbjct: 82 MPEVGADF--VAIDEIQLCADPERGHVFTDRLLNMRGLHETLLLGSDTMRPAIAALVP-- 137
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
V+ ER S L S + IV FS +Y + I R K C++V
Sbjct: 138 --QVQFMRRERFSTLSWAGSK--KISRMPPRSAIVCFSVEEVYATAELIR-RQKGGCAVV 192
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q + E D LVA+DAIGMGLNL+I + FS +KFDG R L
Sbjct: 193 MGALSPRTRNAQVAMYQ--QGEVDYLVATDAIGMGLNLDIRHVAFSATEKFDGRRYRPLF 250
Query: 180 VPEVKQIAGRAGRY 193
E+ QIAGRAGR+
Sbjct: 251 PHELGQIAGRAGRH 264
>gi|315498118|ref|YP_004086922.1| helicase domain-containing protein [Asticcacaulis excentricus CB
48]
gi|315416130|gb|ADU12771.1| helicase domain protein [Asticcacaulis excentricus CB 48]
Length = 811
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL E G PL + + +VQ
Sbjct: 102 DFLAVDEIQLCADIERGHVFTDRLLRARGRYETLFMGAATFAPLFRSLFP----HAEVQF 157
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLS L + + IV FS +Y + + I R + ++V GSL P+T
Sbjct: 158 RERLSQLSYSGSK--KLTRLPKRTAIVAFSTEQVYAIAELIR-RQRGGAAVVMGSLSPKT 214
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F E D LVA+DAIGMGLN++I + F+++ KFDG R LT E QIA
Sbjct: 215 RNAQVDLFQ--RGEVDFLVATDAIGMGLNMDIDHVAFASLSKFDGRRTRALTAQEAAQIA 272
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLL 213
GRAGR + G D D L+
Sbjct: 273 GRAGRNRREGTFGVTGDADEMDDDLI 298
>gi|398384532|ref|ZP_10542562.1| superfamily II RNA helicase [Sphingobium sp. AP49]
gi|397722691|gb|EJK83227.1| superfamily II RNA helicase [Sphingobium sp. AP49]
Length = 996
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 13/210 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVT 59
M +SD+ +DE Q+ RG FT R L E + G + ++ ++
Sbjct: 124 MTGGLSDFAFVALDEAQLGADPERGHIFTDRILRARGREETMILGSASIARTVKSLVP-- 181
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D+++ R S L S + IV FS +Y + + + R + ++V
Sbjct: 182 --DIEIIGRPRFSTLSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVV 236
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q F + E D LVA+DAIGMGLNL+++ + F++++KFDG R LT
Sbjct: 237 MGALSPRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLT 294
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209
V E+ QIAGRAGR+ G L SED
Sbjct: 295 VAEMAQIAGRAGRHHKD---GTFGSLGSED 321
>gi|384261019|ref|YP_005416205.1| Helicase-like [Rhodospirillum photometricum DSM 122]
gi|378402119|emb|CCG07235.1| Helicase-like [Rhodospirillum photometricum DSM 122]
Length = 667
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT LL E G PLI++++ D + + Y R
Sbjct: 108 AIDEIQLCGDPDRGHVFTDRLLHARGRVETMFLGAETMAPLIRRLVPGCLFDTRPR-YSR 166
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
L+ L + +V FS +Y L + + R + ++V G+L P TR
Sbjct: 167 LTCSGHLR-----LQRLPRRSAVVAFSADDVYALGEMVR-RQRGGAAVVMGALSPRTRNA 220
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN++I + F+ ++KFDG +R L EV QIAGRA
Sbjct: 221 QVEMYQ--SGEVDYLVATDAIGMGLNMDIDHVAFAALEKFDGTWMRRLAPQEVAQIAGRA 278
Query: 191 GRY 193
GR+
Sbjct: 279 GRH 281
>gi|222150211|ref|YP_002551168.1| ATP-dependent helicase [Agrobacterium vitis S4]
gi|221737193|gb|ACM38156.1| ATP-dependent helicase [Agrobacterium vitis S4]
Length = 1047
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT LL + E L G P++Q +L + V R
Sbjct: 93 AIDEIQLAGDLERGHIFTDRLLHLRGREETLLLGSATMKPILQHLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGEKKITRLPQRTAIVAFSADEVYSIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR+ G+ G V + E + L +P +L+
Sbjct: 264 GRHLKDGTFGVTGRVDPFEPELVERLQSHHFDPVKVLQ 301
>gi|404251913|ref|ZP_10955881.1| helicase domain-containing protein, partial [Sphingomonas sp. PAMC
26621]
Length = 765
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A +DE Q+ RG FT R L E L G A P+++ ++ +
Sbjct: 87 DRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEALRPMVKALVP----GI 142
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
++ + R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 143 EIINRPRFSTLSYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR-RLRGGAAVVMGAL 199
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q F + E D LVA+DAIGMGLN++++ + F+++ KFDG R LTV E+
Sbjct: 200 SPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVTHVAFASLNKFDGHRQRRLTVAEM 257
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 258 AQIAGRAGRH 267
>gi|148262068|ref|YP_001236195.1| helicase domain-containing protein [Acidiphilium cryptum JF-5]
gi|326405580|ref|YP_004285662.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
gi|146403749|gb|ABQ32276.1| helicase domain protein [Acidiphilium cryptum JF-5]
gi|325052442|dbj|BAJ82780.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
Length = 837
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 14/184 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G I+++L+ + ++++
Sbjct: 93 AVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLG----AETIRRLLRRLVPEAEIETR 146
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLS L + S + IV FS +Y + +A+ +R + C++V G L P TR
Sbjct: 147 PRLSQLS--HAGPAKLSRLPPRSAIVAFSAAEVYAIAEAVRTR-RGGCAVVMGRLSPRTR 203
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R LT EV QIAG
Sbjct: 204 NAQVALYQE--KEVDFLVATDAIGMGLNMDVDHVAFAGLSKFDGHRPRLLTASEVAQIAG 261
Query: 189 RAGR 192
RAGR
Sbjct: 262 RAGR 265
>gi|329114809|ref|ZP_08243566.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695940|gb|EGE47624.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 862
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G PL++ +++ +++ + R
Sbjct: 108 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIR----GIEIDTRPR 163
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + C++V G L P TR
Sbjct: 164 LSNLT--YTGHMRLSRLPARTAIVAFSIAEVYAIAELIR-RKRGGCAVVMGQLSPRTRNA 220
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QIAGRA
Sbjct: 221 QVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICKFDGYRNRLLTPAEAAQIAGRA 278
Query: 191 GR------YGSK-----FPVGEVTCLDS---EDLPLL 213
GR +G+ FP G V +++ E LP L
Sbjct: 279 GRGTQDGTFGTTGECPPFPEGMVEAIETHHFEPLPFL 315
>gi|395491122|ref|ZP_10422701.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26617]
Length = 838
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A +DE Q+ RG FT R L E L G A P+++ ++ +
Sbjct: 87 DRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEALRPMVKALVP----GI 142
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
++ + R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 143 EIINRPRFSTLSYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR-RLRGGAAVVMGAL 199
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q F + E D LVA+DAIGMGLN++++ + F+++ KFDG R LTV E+
Sbjct: 200 SPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVTHVAFASLNKFDGHRQRRLTVAEM 257
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 258 AQIAGRAGRH 267
>gi|390166272|ref|ZP_10218535.1| helicase domain-containing protein [Sphingobium indicum B90A]
gi|389590669|gb|EIM68654.1| helicase domain-containing protein [Sphingobium indicum B90A]
Length = 891
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
Query: 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 64
+ DY +DE Q+ RG FT LL E + A+ I ++++ D +
Sbjct: 104 LKDYAFVALDEAQLGADPERGHIFTDRLLRARGREETMILGSAS---IGRLVKALVPDAE 160
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 161 IIGRPRFSTLSYAGAK--KLSRLPKRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALS 217
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E D LVA+DAIGMGLNL+++ + F++++KFDG R LTV E+
Sbjct: 218 PRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVAEMA 275
Query: 185 QIAGRAGRYGSKFPVGEVTCLDSE 208
QIAGRAGR+ G + D +
Sbjct: 276 QIAGRAGRHHKDGTFGSLGHEDGD 299
>gi|384531084|ref|YP_005715172.1| helicase domain-containing protein [Sinorhizobium meliloti BL225C]
gi|407722270|ref|YP_006841932.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|433615036|ref|YP_007191834.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|333813260|gb|AEG05929.1| helicase domain protein [Sinorhizobium meliloti BL225C]
gi|407320502|emb|CCM69106.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|429553226|gb|AGA08235.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 1023
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++ +L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRILHLRGRGETLLLGAATMRPILEYLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 MSQL--LYAGSKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 206 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 263
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+H+
Sbjct: 264 GRHVRDGTFGVTGRVDPFDEDLVHR 288
>gi|334345099|ref|YP_004553651.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334101721|gb|AEG49145.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
Length = 891
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
Query: 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 64
+ DY +DE Q+ RG FT LL E + A+ I ++++ D +
Sbjct: 104 LKDYAFVALDEAQLGADPERGHIFTDRLLRARGREETMILGSAS---IGRLVKALVPDAE 160
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 161 IIGRPRFSTLSYAGAK--KLSRLPKRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALS 217
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E D LVA+DAIGMGLNL+++ + F++++KFDG R LTV E+
Sbjct: 218 PRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVSEMA 275
Query: 185 QIAGRAGRYGSKFPVGEVTCLDSE 208
QIAGRAGR+ G + D +
Sbjct: 276 QIAGRAGRHHKDGTFGSLGHEDGD 299
>gi|384537799|ref|YP_005721884.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
gi|336034691|gb|AEH80623.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
Length = 1028
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++ +L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRILHLRGRGETLLLGAATMRPILEYLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--LYAGSKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D D L+H+
Sbjct: 269 GRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|254293141|ref|YP_003059164.1| helicase [Hirschia baltica ATCC 49814]
gi|254041672|gb|ACT58467.1| helicase domain protein [Hirschia baltica ATCC 49814]
Length = 911
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 13/213 (6%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT R L +E L G P++ L + D + +
Sbjct: 93 AIDEIQIARDPDRGHVFTDRILHARGQHETMLLGAETMRPVLN-ALDLHVDAEHRERFSE 151
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
L+ P+ + + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 152 LNYTGPIKI-----TKLPKRTAIVAFSTEEVYSIAELLR-RQRGGSAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLNL++S I F++ +KFDG R L E QIAGRA
Sbjct: 206 QVELYQ--SGEVDYLVATDAIGMGLNLDVSHIAFASRRKFDGHRSRFLRADEAAQIAGRA 263
Query: 191 GRYGSKFPVGEVT---CLDSEDLPLLHKSLLEP 220
GR+ GE + + ED+ + +P
Sbjct: 264 GRFRDDGTFGETSDCFLFEEEDIQRVENHTFDP 296
>gi|338981027|ref|ZP_08632266.1| Helicase domain-containing protein [Acidiphilium sp. PM]
gi|338208067|gb|EGO95963.1| Helicase domain-containing protein [Acidiphilium sp. PM]
Length = 502
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 14/184 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+DEIQ+ RG FT LL G+ E G I+++L+ + ++++
Sbjct: 86 AVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLG----AETIRRLLRRLVPEAEIETR 139
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
RLS L + S + IV FS +Y + +A+ +R + C++V G L P TR
Sbjct: 140 PRLSQLS--HAGPAKLSRLPPRSAIVAFSAAEVYAIAEAVRTR-RGGCAVVMGRLSPRTR 196
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R LT EV QIAG
Sbjct: 197 NAQVALYQE--KEVDFLVATDAIGMGLNMDVDHVAFAGLSKFDGHRPRLLTASEVAQIAG 254
Query: 189 RAGR 192
RAGR
Sbjct: 255 RAGR 258
>gi|56696301|ref|YP_166658.1| helicase [Ruegeria pomeroyi DSS-3]
gi|56678038|gb|AAV94704.1| helicase, putative [Ruegeria pomeroyi DSS-3]
Length = 959
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH----LCGDPAAVPLIQQILQVTGDDVK 64
DC +DEIQ+ RG FT LL A LH L D P+ + + +
Sbjct: 89 DCVAVDEIQLCADPERGHVFTDRLL--RARGLHETLLLGSDTMRGPIAALV-----PEAQ 141
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
ER+S LV + + IV FS +Y + + I R K ++V G+L
Sbjct: 142 FVRRERMSQLVYTGSK--KITRMPPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALS 198
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + E D LVA+DAIGMGLNL+I + FS + KFDG +R L E+
Sbjct: 199 PRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDHVAFSALSKFDGRRMRPLAPNELA 256
Query: 185 QIAGRAGR---YGSKFPVGEVTCLD 206
QIAGRAGR G+ GE LD
Sbjct: 257 QIAGRAGRGMASGTFGVTGEARPLD 281
>gi|222087733|ref|YP_002546270.1| ATP-dependent DNA helicase [Agrobacterium radiobacter K84]
gi|221725181|gb|ACM28337.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
Length = 1057
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G P+++Q+L + V R
Sbjct: 104 AIDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAGTMRPILEQLLP----GITVVERPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 160 LSHL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 217 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 274
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V D E
Sbjct: 275 GRHLKDGTFGVTGQVDPFDDE 295
>gi|393765522|ref|ZP_10354084.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392729104|gb|EIZ86407.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 1103
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT LL + E L G +PL+Q ++ +V
Sbjct: 79 DLDVAYVAIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTMLPLVQGLIP----NV 134
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 135 HTTTRPRLSKLSFAGEK--RLSRLPRRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 191
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D LVA+DA+GMGLNL++ + F+ K+DG R LT E+
Sbjct: 192 SPRTRNAQVEMYQ--AGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLTPAEM 249
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 250 GQIAGRAGRH 259
>gi|94497176|ref|ZP_01303748.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
gi|94423281|gb|EAT08310.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
Length = 901
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Query: 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61
A D+ +DE Q+ RG FT LL E + A+ I +I++
Sbjct: 99 AGAKEDFAFVALDEAQLGADPERGHIFTDRLLRARGREETMILGSAS---ISRIVKALIP 155
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
DV + S R S L S + IV FS +Y + + + R + ++V G
Sbjct: 156 DVDIISRPRFSTLSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMG 212
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
+L P TR Q F + + D LVA+DAIGMGLNL+++ + F++++KFDG R LTV
Sbjct: 213 ALSPRTRNAQVQMF--LNGDVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVS 270
Query: 182 EVKQIAGRAGRY 193
E+ QIAGRAGR+
Sbjct: 271 EMAQIAGRAGRH 282
>gi|398378112|ref|ZP_10536279.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397725570|gb|EJK86019.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 1044
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G P+++Q+L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAGTMRPILEQLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 LSHL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V D E
Sbjct: 264 GRHLKDGTFGVTGQVDPFDDE 284
>gi|427427310|ref|ZP_18917354.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
gi|425883236|gb|EKV31912.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
Length = 821
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L E G PL+ +++ + Q+
Sbjct: 63 DFLAVDEIQLCADPDRGHIFTDRLLRARGMRETMFLGSETIKPLMYKLVP----GCEFQT 118
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L + + IV FS +Y + + + R + ++V G+L P T
Sbjct: 119 RPRLSQLKYAGPK--KLTRLPRRAAIVAFSAADVYAIAELVR-RQRGGAAVVLGALSPRT 175
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F + E D LVA+DAIGMGLN+++ + F+ ++KFDG R LT PEV QIA
Sbjct: 176 RNAQVAMFQ--AGEVDHLVATDAIGMGLNMDVDHVAFAALRKFDGHSPRALTAPEVAQIA 233
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGR G+ G+ +D E
Sbjct: 234 GRAGRGMNDGTFGTTGDAGTIDPE 257
>gi|294012718|ref|YP_003546178.1| putative helicase [Sphingobium japonicum UT26S]
gi|292676048|dbj|BAI97566.1| putative helicase [Sphingobium japonicum UT26S]
Length = 878
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
Query: 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 64
+ DY +DE Q+ RG FT LL E + A+ I ++++ D +
Sbjct: 104 LKDYAFVALDEAQLGADPERGHIFTDRLLRARGREETMILGSAS---IGRLVKALVPDAE 160
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 161 IIGRPRFSTLSYAGAK--KLSRLPKRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALS 217
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q F + E D LVA+DAIGMGLNL+++ + F++++KFDG R LTV E+
Sbjct: 218 PRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVSEMA 275
Query: 185 QIAGRAGRYGSKFPVGEVTCLDSE 208
QIAGRAGR+ G + D +
Sbjct: 276 QIAGRAGRHHRDGTFGSLGHEDGD 299
>gi|188584090|ref|YP_001927535.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179347588|gb|ACB83000.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 1138
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 17/230 (7%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT R L E L G +PL+Q ++ V+ + R
Sbjct: 100 AIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSATMLPLVQALIP----GVQTTTRPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L S + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSSLSFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R LT E+ QIAGRA
Sbjct: 213 QVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLTPAEMGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GR+ G+ G + E + L EP ML+ + N DL +
Sbjct: 271 GRHTSDGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ----WRNPDLDF 316
>gi|218532734|ref|YP_002423550.1| helicase [Methylobacterium extorquens CM4]
gi|218525037|gb|ACK85622.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 1136
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 19/237 (8%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT R L E L G +PL+Q ++ V
Sbjct: 93 DLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSSTMLPLVQALIP----GV 148
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 149 QTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 205
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R L+ E+
Sbjct: 206 SPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLSPAEM 263
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
QIAGRAGR+ G+ G + E + L EP ML+ + N DL +
Sbjct: 264 GQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ----WRNPDLEF 316
>gi|260434067|ref|ZP_05788038.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
gi|260417895|gb|EEX11154.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
Length = 936
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL + L L D P+ + Q +
Sbjct: 89 DFVAIDEIQLCTDPERGHVFTDRLLRMRGTHETLFLGADTMRGPIAALVPQA-----QFA 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S LV S + IV FS +Y + + + R K ++V G+L P
Sbjct: 144 RRERMSQLVYTGSK--KISRMPPRSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+++ + FS++ KFDG +R L E+ QI
Sbjct: 201 TRNAQVALYQNG--EVDYLVATDAIGMGLNLDVNHVAFSSLSKFDGRRMRPLAPNELAQI 258
Query: 187 AGRAGRY---GSKFPVGEVTCLD 206
AGRAGR G+ GE + LD
Sbjct: 259 AGRAGRGMSDGTFGVTGEASPLD 281
>gi|405356476|ref|ZP_11025445.1| ATP-dependent DNA helicase [Chondromyces apiculatus DSM 436]
gi|397090520|gb|EJJ21375.1| ATP-dependent DNA helicase [Myxococcus sp. (contaminant ex DSM
436)]
Length = 815
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 12/204 (5%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGD 61
D V+D+ +DEIQ+ + RG FT R L E G P++Q ++
Sbjct: 90 DRVADF--VAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMRPMLQTLIP---- 143
Query: 62 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 121
V+ RLS L S ++ +V FS +Y L +++ R + ++V G
Sbjct: 144 HASVKRATRLSQL--RYSGHRSLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLG 200
Query: 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 181
+L P TR Q + S E LVA+DAIGMGLNL+++ + F+ + K+DG E RDL
Sbjct: 201 ALSPRTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFAGLSKYDGAEQRDLFPD 258
Query: 182 EVKQIAGRAGRYGSKFPVGEVTCL 205
E+ QIAGRAGR+ + G + L
Sbjct: 259 ELAQIAGRAGRHLNDGSFGTLNTL 282
>gi|452751628|ref|ZP_21951373.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
gi|451960847|gb|EMD83258.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
Length = 914
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E L G PLI+++L D ++ R
Sbjct: 161 ALDEIQLAADPERGHVFTDRLLHRRGTAETMLLGAATMAPLIRRLLP----DAYIEERPR 216
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L S + ++ FS +Y L + + R K ++V G+L P TR
Sbjct: 217 FSTLSYAGPK--KLSRLPRRAALIAFSADEVYGLAEMLR-RQKGGAAVVMGALSPRTRNA 273
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D LVA+DAIGMGLN++I + F+ + KFDG R L E+ QIAGRA
Sbjct: 274 QVELYQ--SGEVDYLVATDAIGMGLNMDIDHVAFAALSKFDGQRQRRLMPAELGQIAGRA 331
Query: 191 GRY 193
GRY
Sbjct: 332 GRY 334
>gi|349686997|ref|ZP_08898139.1| DNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 845
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYE 69
+DEIQ+ RG FT LL + + L D I+ +++ ++++
Sbjct: 88 AVDEIQLCADPDRGHIFTDRLLHARGLSETMFLGAD-----TIRHLIRRLVPGIEIEHRP 142
Query: 70 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 129
RLS L + + + IV FS +Y + + + R + C+IV G L P TR
Sbjct: 143 RLSQLT--HAGACKLTRLPPRSAIVAFSAGEVYAIAELLRRR-RGGCAIVMGQLSPRTRN 199
Query: 130 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189
Q + + E D LVA+DAIGMGLN++++ + F+++ KFDG +R LT E+ Q+AGR
Sbjct: 200 AQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLSKFDGTRIRPLTAGEIAQVAGR 257
Query: 190 AGR 192
AGR
Sbjct: 258 AGR 260
>gi|338533423|ref|YP_004666757.1| putative helicase [Myxococcus fulvus HW-1]
gi|337259519|gb|AEI65679.1| putative helicase [Myxococcus fulvus HW-1]
Length = 790
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ + RG FT R L E G P++Q ++ V+
Sbjct: 94 DFIAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMRPMVQTLIP----HASVKR 149
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S ++ +V FS +Y L +++ R + ++V G+L P T
Sbjct: 150 ATRLSQL--RYAGHRSLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLGALSPRT 206
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S E LVA+DAIGMGLNL+++ + F+ + KFDG + R+L E+ QIA
Sbjct: 207 RNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFAALSKFDGADQRELYPDELAQIA 264
Query: 188 GRAGRYGSKFPVGEVTCL 205
GRAGR+ + G + L
Sbjct: 265 GRAGRHLNDGSFGTLNTL 282
>gi|114570842|ref|YP_757522.1| helicase [Maricaulis maris MCS10]
gi|114341304|gb|ABI66584.1| helicase domain protein [Maricaulis maris MCS10]
Length = 925
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L E L G ++++++ + ++ ER
Sbjct: 96 AVDEIQLGADTERGHVFTDRLLRARGTEETMLLGAGTMYRMVRELVP----EAEITYRER 151
Query: 71 LSPLV---PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
S L P N + + +V FS A+Y + + + R + ++V G L P T
Sbjct: 152 FSQLTYAGPAN-----LTRLPRRSAVVAFSAEAVYAIAELLRRR-RGGAAVVMGGLSPRT 205
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S E D LVA+DAIGMGLN++I + F+ +KFDG R LT E+ QIA
Sbjct: 206 RNAQVELYQ--SGEVDFLVATDAIGMGLNMDIDHVAFAESRKFDGRRRRRLTAAEMAQIA 263
Query: 188 GRAGRYGSKFPVGEVT 203
GRAGR+ + GE
Sbjct: 264 GRAGRFRNDGTFGETA 279
>gi|163853790|ref|YP_001641833.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163665395|gb|ABY32762.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 1140
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT R L E L G +PL+Q ++ V
Sbjct: 93 DLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSSTMLPLVQALIP----GV 148
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 149 QTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 205
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R L+ E+
Sbjct: 206 SPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLSPAEM 263
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G + E + L EP ML+
Sbjct: 264 GQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ 308
>gi|398827720|ref|ZP_10585923.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
gi|398219018|gb|EJN05515.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
Length = 1006
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D D IDE+Q+ RG FT +L + E L G +++++L +
Sbjct: 97 TDVDFVAIDEVQLANDLERGHIFTDRILHLRGRQETILLGAATMRGILEKLLP----GIS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + RLS L + + IV F+ +Y + + I R ++V G+L
Sbjct: 153 VVTRPRLSNLTYAGSK--KITRLPPRTAIVAFAAEEVYSIAELIR-RQNGGAAVVMGTLS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR +Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDL+ E+
Sbjct: 210 PRTRNKQVELYQ--SGDVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRDLSPTEIG 267
Query: 185 QIAGRAGRY 193
QIAGRAGR+
Sbjct: 268 QIAGRAGRH 276
>gi|158421854|ref|YP_001523146.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158328743|dbj|BAF86228.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 1218
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 113/236 (47%), Gaps = 15/236 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDE+Q+ RG FT LL E L G PLIQ+++ V
Sbjct: 229 DVDVAFVAIDEVQLATDLDRGHVFTNRLLNRRGRFETMLLGSATMRPLIQKLMP----GV 284
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ RLS L + S + IV FS +Y + + I R + ++V G+L
Sbjct: 285 TMVERPRLSTL--MFAGEKKISRLPRRSAIVAFSAEEVYSIAEFIR-RQRGGAAVVMGAL 341
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D L+A+DAIGMGLNL++ + F++ +KFDG + R L E+
Sbjct: 342 SPRTRNAQVELYQNG--DVDYLIATDAIGMGLNLDVDHVAFASDRKFDGWQFRRLNPMEM 399
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
QIAGRAGR G+ G LD E + L E + +L+ P++ I
Sbjct: 400 AQIAGRAGRAMRDGTFGTTGRCPPLDQELVERLEAHDFENARVLQWRNAVPDYRTI 455
>gi|420246044|ref|ZP_14749553.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
gi|398044032|gb|EJL36882.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
Length = 594
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 143/317 (45%), Gaps = 28/317 (8%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + +E L G P+++++L + V R
Sbjct: 122 AIDEVQLAGDLERGHIFTDRILHLRGRDETLLLGAATMRPILERLLP----GITVVERPR 177
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 178 LSQL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 234
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R L E+ QIAGRA
Sbjct: 235 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRSLNPAELAQIAGRA 292
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF-DLIYMYSRLHPDS 246
GR+ G+ G+V + E + + +P +L+ +F L + L
Sbjct: 293 GRHVRDGTFGVTGQVAPFEDELVERIESHHFDPVKVLQWRSKNLDFSSLKALRESLDAAP 352
Query: 247 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC-------ISPVD 299
+L G+ + +Y + E+ +AT P R+ + + C I+P
Sbjct: 353 TLAGLTRALPATDSQAFDY-LSRYPEIKDIATT----PQRVEKLWEACALPDYRRIAPAQ 407
Query: 300 MNDDISS--QGLTQFAT 314
D IS+ L +F T
Sbjct: 408 HADLISTLFSDLVRFGT 424
>gi|254563753|ref|YP_003070848.1| hypothetical protein METDI5429 [Methylobacterium extorquens DM4]
gi|254271031|emb|CAX27038.1| conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and conserved C-terminal DEAD/DEAH
box domain protein (C-terminal) [Methylobacterium
extorquens DM4]
Length = 1135
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT R L E L G +PL+Q ++ V
Sbjct: 93 DLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLIGSSTMLPLVQALIP----GV 148
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L S + IV FS +Y + + I R + ++V G+L
Sbjct: 149 QTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 205
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DA+GMGLNL++ + F+ K+DG R L+ E+
Sbjct: 206 SPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLSPAEM 263
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G + E + L EP ML+
Sbjct: 264 GQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETHDFEPVRMLQ 308
>gi|83859716|ref|ZP_00953236.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
gi|83852075|gb|EAP89929.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
Length = 937
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L E G P+++ ++ + +++ ER
Sbjct: 96 AVDEIQLAADPERGHIFTDRLLHARGTQETLFLGAATMRPILRHLIP----EAEIEERER 151
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 152 FSTLSYAGA--KKLTKLPRRSAIVAFSSEDVYSIAELVR-RQRGGAAVVMGALSPRTRNA 208
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S E D L+A+DAIGMGLN+++ + F++ KFDG + R L EV QIAGRA
Sbjct: 209 QVELYQ--SGEVDFLIATDAIGMGLNMDVDHVAFASYSKFDGRKRRRLFPQEVGQIAGRA 266
Query: 191 GRYGSKFPVGEVT 203
GR+ S GE
Sbjct: 267 GRFRSDGTFGETA 279
>gi|330993481|ref|ZP_08317416.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759511|gb|EGG76020.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 897
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYE 69
+DEIQ+ RG FT LL A + L D I+ +++ ++++
Sbjct: 139 AVDEIQLCADPDRGHIFTDRLLHARGTAETMFLGAD-----TIRNLIRRLVPGIEIEHRP 193
Query: 70 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 129
RLS L + + + IV FS +Y + + + R + C+IV G L P TR
Sbjct: 194 RLSQLT--HAGGCKLTRLPPRSAIVAFSASEVYAIAELLRRR-RGGCAIVMGQLSPRTRN 250
Query: 130 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189
Q + + E D LVA+DAIGMGLN++++ + F+++ KFDG +R L E+ Q+AGR
Sbjct: 251 AQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLSKFDGTRVRPLNAGEIAQVAGR 308
Query: 190 AGRYGSKFPVGEV-TCLDSEDLPLLHKSLLE 219
AGR G TC P LH+ L E
Sbjct: 309 AGRGLRDGTFGTTGTC------PPLHEELAE 333
>gi|259417878|ref|ZP_05741797.1| MgpS [Silicibacter sp. TrichCH4B]
gi|259346784|gb|EEW58598.1| MgpS [Silicibacter sp. TrichCH4B]
Length = 929
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ G RG FT LL G+ L L D P+ + V+
Sbjct: 89 DFLAIDEIQLCGDPERGHVFTDRLLRSRGL-KETLFLGADTMRGPISALV-----PGVEF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER+S LV S + IV FS ++Y + + I R K ++V G+L P
Sbjct: 143 VRRERMSELVYAGSK--KISRMPPRTAIVGFSVDSVYAIAELIR-RQKGGAAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + E D LVA+DAIGMGLNL++ + FS+ KFDG +R L E+ Q
Sbjct: 200 RTRNAQVALYQNG--EVDYLVATDAIGMGLNLDVDHVAFSSTSKFDGRRMRPLAPNELAQ 257
Query: 186 IAGRAGR---YGSKFPVGEVTCLD 206
IAGRAGR +GS G+ LD
Sbjct: 258 IAGRAGRGMSHGSFGVTGDARPLD 281
>gi|359788797|ref|ZP_09291765.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359255358|gb|EHK58276.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 1166
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+D IDE+Q+ G RG FT +L + + L +Q ILQ V V
Sbjct: 97 TDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLL---LGAATMQGILQRLLRGVSV 153
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 154 VTRPRLSHLAYSGAK--KLTRLPPRSAIVAFSADEVYAIGELIR-RQRGGVAVVLGALSP 210
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q
Sbjct: 211 RTRNAQVAIYQ--SGDVDFLVATDAIGMGLNLDLDHVAFAQNRKFDGFQYRNLNASELGQ 268
Query: 186 IAGRAGRY 193
IAGRAGR+
Sbjct: 269 IAGRAGRH 276
>gi|84687446|ref|ZP_01015324.1| helicase, putative [Maritimibacter alkaliphilus HTCC2654]
gi|84664604|gb|EAQ11090.1| helicase, putative [Rhodobacterales bacterium HTCC2654]
Length = 919
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL +E G I ++ V+
Sbjct: 86 DFVAIDEIQLCADPERGHVFTERLLNARGLHETLFMGSDTMRGAIAALVP----KVQFMR 141
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L S + IV FS +Y L + + R K ++V G+L P T
Sbjct: 142 RERFSSLTYAGSK--KISRMPGRSAIVGFSVDNLYALAELMR-RQKGGVAVVMGALSPRT 198
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+++ + FS + KFDG +R L E+ QIA
Sbjct: 199 RNAQVAMYQNG--DVDYLVATDAIGMGLNLDVNHVAFSALSKFDGRRMRGLAPNELAQIA 256
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGRY GS GE L+ E
Sbjct: 257 GRAGRYMSDGSFGVTGEAQPLEDE 280
>gi|114800036|ref|YP_762088.1| putative helicase [Hyphomonas neptunium ATCC 15444]
gi|114740210|gb|ABI78335.1| putative helicase [Hyphomonas neptunium ATCC 15444]
Length = 957
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT +L + N E L G ++ +L+ V+ +
Sbjct: 86 DFLAIDEIQLAEDDDRGHVFTDRILNMRGNHETLLLG----ADTMRGLLRELKLGVETEP 141
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L + + IV FS +Y + + + R K ++V G+L P T
Sbjct: 142 RERFSEL--RYTGHTKITKLPKRTAIVGFSAEEVYAIAELLR-RQKGGAAVVMGALSPRT 198
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S E D +VA+DAIGMGLNL++ R++F++ KFDG R L++ E QIA
Sbjct: 199 RNAQVALYQ--SGEVDYIVATDAIGMGLNLDVERVVFASRSKFDGRRHRPLSLAECGQIA 256
Query: 188 GRAGRYGSKFPVGEV 202
GRAGR+ + GE
Sbjct: 257 GRAGRFRTDGEFGET 271
>gi|347761891|ref|YP_004869452.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580861|dbj|BAK85082.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 870
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYE 69
+DEIQ+ RG FT LL A + L D I+ +++ ++++
Sbjct: 113 AVDEIQLCADPDRGHIFTDRLLHARGTAETMFLGAD-----TIRNLIRRLVPGIEIEHRP 167
Query: 70 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 129
RLS L + + + IV FS +Y + + + R + C+IV G L P TR
Sbjct: 168 RLSQLT--HAGGCKLTRLPPRSAIVAFSASEVYAIAELLRRR-RGGCAIVMGQLSPRTRN 224
Query: 130 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189
Q + + E D LVA+DAIGMGLN++++ + F+++ KFDG +R L E+ Q+AGR
Sbjct: 225 AQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLSKFDGARVRPLNAGEIAQVAGR 282
Query: 190 AGRYGSKFPVGEV-TCLDSEDLPLLHKSLLE 219
AGR G TC P LH+ L E
Sbjct: 283 AGRGLRDGTFGTTGTC------PPLHEELAE 307
>gi|163760001|ref|ZP_02167085.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
gi|162282959|gb|EDQ33246.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
Length = 1064
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 13/224 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ G RG FT +L + E L G +++Q+L +
Sbjct: 99 TDAAFVAIDEVQIAGDLERGHVFTDRILSLRGREETLLLGSLTVRGILEQLLP----GIT 154
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V RLS L + + IV FS +Y + + + R + ++V G+L
Sbjct: 155 VIERPRLSELHYAGSK--KITRLPRRSAIVAFSADEVYAIAELVR-RQRGGAAVVLGALS 211
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG R LT E
Sbjct: 212 PRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDVDHVAFAQERKFDGHSYRQLTASEFG 269
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G+V+ L + + L + EP +L+
Sbjct: 270 QIAGRAGRHLRDGTFGVTGQVSPLHDDLVHRLESHVFEPVKILQ 313
>gi|326386139|ref|ZP_08207763.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
gi|326209364|gb|EGD60157.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
Length = 863
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 10/203 (4%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDE Q+ RG FT LL E + G P+I+ ++ + +V
Sbjct: 110 DLAFVAIDEAQLSADPERGHVFTDRLLHTRGREETMILGSATLEPMIRALVP----EAEV 165
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S R S L + S I IV FS +Y + + + R + ++V G+L P
Sbjct: 166 ISRPRFSTLS--HAGAKKLSRIPPRSAIVAFSAEQVYAMAEMLR-RFRGGAAVVMGALSP 222
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
+TR Q + + E D LVA+DAIGMGLNL++ + F+ + K+DG R LT E+ Q
Sbjct: 223 QTRNAQVAMYQ--AGEVDYLVATDAIGMGLNLDVHHVAFAGLSKYDGHRQRRLTTAEMAQ 280
Query: 186 IAGRAGRYGSKFPVGEVTCLDSE 208
IAGRAGR+ G + L S
Sbjct: 281 IAGRAGRHHKDGTFGTLAGLASH 303
>gi|254461628|ref|ZP_05075044.1| Helicase conserved C-terminal domain protein [Rhodobacterales
bacterium HTCC2083]
gi|206678217|gb|EDZ42704.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 904
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH----LCGDPAAVPLIQQILQVTGDDVK 64
D +DEIQ+ RG FT LL A LH + D P+ I D +
Sbjct: 89 DFLAVDEIQLCADPERGHVFTERLL--SARGLHETLFMGADTMRDPIKSLI-----PDAQ 141
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ ER+S L + P S ++ IV FS +Y + + I R K ++V G+L
Sbjct: 142 FVARERMSELA-YSGP-KKISRMRPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALS 198
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + +F LVA+DAIGMGLNL+I + FS++ KFDG +R L E+
Sbjct: 199 PRTRNAQVEMYQNGDVDF--LVATDAIGMGLNLDIDHVAFSSLSKFDGQRMRPLMANELA 256
Query: 185 QIAGRAGR 192
QIAGRAGR
Sbjct: 257 QIAGRAGR 264
>gi|402850589|ref|ZP_10898784.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
gi|402499194|gb|EJW10911.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
Length = 1147
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDV 63
D D A +DE+Q+ RG FT +L E L A V P+I+++L
Sbjct: 76 DLDVAFVAVDEVQLGADFERGHVFTDRILNRRGREETLVLGAATVRPMIEKLLP----GA 131
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
V S RLS L S +T IV FS +Y + + I R + ++V G+L
Sbjct: 132 NVISRPRLSQLTFAGEKKLSRQPRRT--AIVAFSAEEVYAIAELIR-RQRGGAAVVLGAL 188
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + S + D LVA+DAIGMGLNL++ + F + +KFDG + R LT E
Sbjct: 189 SPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFGSERKFDGYQYRRLTPAEF 246
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
QIAGRAGR+ G+ G T + + + L EP +L+
Sbjct: 247 GQIAGRAGRHSRDGTFGTTGRCTPFEPDLVHALESHSFEPIKVLQ 291
>gi|357030981|ref|ZP_09092925.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
gi|356415675|gb|EHH69318.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
Length = 851
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL+Q++ V G ++ +++ R
Sbjct: 104 AVDEIQLAADPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKL--VPGVEIDIRT--R 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS LV + S + IV FS +Y L + I R + C+++ G L P TR
Sbjct: 160 LSSLV--STGYTKLSRLPPRSAIVAFSVGEVYALAEVIRRR-RGGCAVIMGQLSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QIAGRA
Sbjct: 217 QVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTAPRPLYPQEIAQIAGRA 274
Query: 191 GR 192
GR
Sbjct: 275 GR 276
>gi|444914509|ref|ZP_21234652.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
gi|444714741|gb|ELW55620.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
Length = 812
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ + RG FT LL E G P++Q ++ V+
Sbjct: 94 DFLAVDEIQLAAHRERGHVFTDRLLHARGLRETWFLGADTMRPMVQALI----PQASVKR 149
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S ++ +V FS +Y L +++ R + ++V G+L P T
Sbjct: 150 ATRLSQLRYSGSH--SLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLGALSPRT 206
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E LVA+DAIGMGLNL+++ + F+ + K+DG E RDL E+ QIA
Sbjct: 207 RNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVSFAALSKYDGAEQRDLFPDELAQIA 264
Query: 188 GRAGRY 193
GRAGR+
Sbjct: 265 GRAGRH 270
>gi|108760067|ref|YP_630462.1| helicase [Myxococcus xanthus DK 1622]
gi|108463947|gb|ABF89132.1| putative helicase [Myxococcus xanthus DK 1622]
Length = 822
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ + RG FT R L E G P++Q ++ V+
Sbjct: 94 DFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMRPMVQTLI----PHASVKR 149
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S ++ +V FS +Y L +++ R + ++V G+L P T
Sbjct: 150 ATRLSQL--RYAGHRSLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLGALSPRT 206
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + S E LVA+DAIGMGLNL+++ + F+ + KFDG + R+L E+ QIA
Sbjct: 207 RNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFAALSKFDGADQRELYPDELAQIA 264
Query: 188 GRAGRYGSKFPVGEVTCL 205
GRAGR+ + G + L
Sbjct: 265 GRAGRHLNDGSFGTLNTL 282
>gi|254474503|ref|ZP_05087889.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
gi|214028746|gb|EEB69581.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
Length = 1003
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL L L D P+ + V+
Sbjct: 94 DFLAIDEIQLCADPERGHVFTDRLLRARGTRETLFLGADTMRGPISALV-----PGVQFM 148
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S LV S + IV FS +Y + + I R K ++V G+L P
Sbjct: 149 RRERMSDLVYSGSK--KISRMPPRTAIVGFSIDNVYAIAELIR-RQKGGAAVVMGALSPR 205
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS++ KFDG +R L E+ QI
Sbjct: 206 TRNAQVAMYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLSKFDGRRMRQLAPNELAQI 263
Query: 187 AGRAGR---YGSKFPVGEVTCLD 206
AGRAGR +GS G+ LD
Sbjct: 264 AGRAGRGMSHGSFGVTGDAPPLD 286
>gi|398355534|ref|YP_006400998.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
gi|390130860|gb|AFL54241.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
Length = 999
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT LL + E L G P+++ +L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRLLHLRGRGETLLLGAATMRPILEYLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--LYAGSKKITRLPHRSAIVAFSADEVYAIGELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D + L+H+
Sbjct: 269 GRHVRDGTFGVTGRVDPFEDELVHR 293
>gi|384919755|ref|ZP_10019792.1| helicase-like protein [Citreicella sp. 357]
gi|384466357|gb|EIE50865.1| helicase-like protein [Citreicella sp. 357]
Length = 994
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL + +E G I Q+++ V+
Sbjct: 89 DFIGIDEIQLCADPERGHVFTDRLLRMRGLHETLFMGSDTMRGPISQLVR----GVEFIR 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S L L S + IV FS +Y + + I R K ++V G+L P T
Sbjct: 145 RERMSQLSYLGSK--KISRMPARSAIVGFSVDNVYAIAELIR-RTKGGAAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I I FS + KFDG +RDL E+ QIA
Sbjct: 202 RNAQVDLYQNG--DVDYLVATDAIGMGLNLDIDHIAFSALTKFDGRRMRDLQPNELAQIA 259
Query: 188 GRAGR------YGSKFPVGEV 202
GRAGR +G+ G++
Sbjct: 260 GRAGRGMRSGTFGTTGDAGQI 280
>gi|218516034|ref|ZP_03512874.1| putative ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
Length = 465
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 13 IDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
IDE+Q+ G RG FT +L + E L G P++Q +L + + RL
Sbjct: 44 IDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQLLL----PGITIVERPRL 99
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L + + IV FS +Y + + I R + ++V G+L P TR Q
Sbjct: 100 SHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQ 156
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
+ E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRAG
Sbjct: 157 VALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRAG 214
Query: 192 RY---GSKFPVGEVTCLDSE 208
R+ G+ G+V+ D E
Sbjct: 215 RHVRDGTFGVTGQVSPFDEE 234
>gi|103488216|ref|YP_617777.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
gi|98978293|gb|ABF54444.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
Length = 920
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 13 IDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 71
IDE Q+ RG FT R L E + G + L++ ++ D ++ + R
Sbjct: 95 IDEAQLGADPERGHVFTDRLLRARGREETMILGSASIRGLVRDLVP----DAEIVTRPRF 150
Query: 72 SPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131
S L S + IV FS +Y + + + R ++V G+L P TR Q
Sbjct: 151 STLSYAGS--SKLSRLPKRSAIVAFSAEEVYAIAEMLR-RFSGGAAVVMGALSPRTRNAQ 207
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
F + E D LVA+DAIGMGLNL++ + F++++KFDG LR LT+ E+ QIAGRAG
Sbjct: 208 VAMFE--AGEVDYLVATDAIGMGLNLDVRHVAFASLQKFDGRRLRRLTIAEMAQIAGRAG 265
Query: 192 RYGSKFPVGEV 202
R+ G V
Sbjct: 266 RHQQDGSFGTV 276
>gi|383643823|ref|ZP_09956229.1| helicase domain-containing protein [Sphingomonas elodea ATCC 31461]
Length = 825
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE Q+ RG FT R L E L G + P+++ ++ + +V R
Sbjct: 94 ALDEAQLGADPERGHVFTDRLLRARGREETMLLGSDSLRPMLKALVP----EAEVVGRPR 149
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L S + IV FS +Y + +A+ R + ++V G+L P TR
Sbjct: 150 FSTLSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEALR-RLRGGAAVVMGALSPRTRNA 206
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D LVA+DAIGMGLN+++ + F+++ KFDG R LT+ E+ QIAGRA
Sbjct: 207 QVAMFQ--AGEVDYLVATDAIGMGLNMDVHHVAFASLHKFDGRRQRRLTIAEMAQIAGRA 264
Query: 191 GRY 193
GR+
Sbjct: 265 GRH 267
>gi|430005521|emb|CCF21322.1| putative ATP-dependent DNA helicase protein [Rhizobium sp.]
Length = 1003
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG FT +L + E L G P++++IL + + R
Sbjct: 98 AIDEVQLAADLERGHIFTDRILHLRGREETLLLGAGTMRPILERILP----GITIVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R LT E+ QIAGRA
Sbjct: 211 QVGLYQEGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGFQFRHLTPGEMGQIAGRA 268
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V LD E
Sbjct: 269 GRHLRDGTFGVTGQVPPLDDE 289
>gi|392380713|ref|YP_005029909.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
gi|356875677|emb|CCC96425.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
Length = 824
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DE+Q+ RG FT LL E G PLI++++ + S
Sbjct: 83 DFLAVDEVQLCADPERGHIFTDRLLNARGLVETMFLGSDTVQPLIRRLVP----RAEFIS 138
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R S L + + C+V FS +Y L + I R + ++V G+L P T
Sbjct: 139 RPRFSQLT--YAGYRKLTRLPPRSCVVAFSATDVYALAEMIR-RQRGGTAVVLGALSPRT 195
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R L PEV QIA
Sbjct: 196 RNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRAPEVAQIA 253
Query: 188 GRAGR------YGSKFPVGEVTC 204
GRAGR +G+ VGE+
Sbjct: 254 GRAGRHMRDGTFGTTDEVGELEA 276
>gi|39933568|ref|NP_945844.1| MgpS ATP-dependent helicase [Rhodopseudomonas palustris CGA009]
gi|39647414|emb|CAE25935.1| possible MgpS, ATP-dependent helicase [Rhodopseudomonas palustris
CGA009]
Length = 1093
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 105/218 (48%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+IQ++L + + R
Sbjct: 104 AVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMRPMIQRLLP----GASIVTRPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 160 LSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D L+A+DAIGMGLNL++ + F++ +KFDG + R LT E QI GRA
Sbjct: 217 QVAMFQ--SGDVDYLIATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIGGRA 274
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR G+ G + E + L EP ML+
Sbjct: 275 GRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|83591414|ref|YP_425166.1| helicase-like protein [Rhodospirillum rubrum ATCC 11170]
gi|386348096|ref|YP_006046344.1| helicase-like protein [Rhodospirillum rubrum F11]
gi|83574328|gb|ABC20879.1| Helicase-like [Rhodospirillum rubrum ATCC 11170]
gi|346716532|gb|AEO46547.1| helicase-like protein [Rhodospirillum rubrum F11]
Length = 1066
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 33/213 (15%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQ- 66
D IDEIQ+ G RG FT LL E + G PLI++++ D + +
Sbjct: 92 DFLAIDEIQLCGDPERGHLFTERLLNARGREETMFLGAETMAPLIRKLVPGCQFDTRPRF 151
Query: 67 ------SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ +L+ L P + +V FS +Y + + + R + ++V
Sbjct: 152 SQLTYNGHRKLTRLPPRS-------------AVVAFSADDVYAIAELVR-RQRGGAAVVM 197
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
G+L P TR Q + S E D LVA+DAIGMGLN+++ + F+ + KFDG R L+
Sbjct: 198 GALSPRTRNAQVALYQ--SGEVDYLVATDAIGMGLNMDVDHVAFAALSKFDGQGQRGLSA 255
Query: 181 PEVKQIAGRAGRY---------GSKFPVGEVTC 204
EV QIAGRAGR+ G P+ E T
Sbjct: 256 QEVAQIAGRAGRHMNDGTFGVTGDAGPIAEDTV 288
>gi|410943969|ref|ZP_11375710.1| ATP-dependent DNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 871
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL+Q+++ +++ + R
Sbjct: 124 AVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKLVP----GIEIDTRTR 179
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS LV + S + IV FS +Y L + I R + C+++ G L P TR
Sbjct: 180 LSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIRRR-RGGCAVIMGQLSPRTRNA 236
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QIAGRA
Sbjct: 237 QVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTSPRPLFPQEIAQIAGRA 294
Query: 191 GR 192
GR
Sbjct: 295 GR 296
>gi|417102150|ref|ZP_11960644.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
gi|327191766|gb|EGE58768.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
Length = 1063
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++Q +L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQLLLP----GITIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 271 GRHVRDGTFGVTGQVSPFDEE 291
>gi|227823781|ref|YP_002827754.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
gi|227342783|gb|ACP27001.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
Length = 1008
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT LL + E L G P+++ +L + V R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRLLHLRGRGETLLLGAATMRPILEHLLP----GITVVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 MSQL--LYAGSKKITRLPHRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 213 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR+ G+ G V + E + + +P +L+
Sbjct: 271 GRHVRDGTFGVTGRVDPFEDELVQRIESHEFDPVRVLQ 308
>gi|381201266|ref|ZP_09908395.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 981
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 13/210 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVT 59
M +SD+ +DE Q+ RG FT R L E + G + ++ ++
Sbjct: 95 MTGGLSDFAFVALDEAQLGADPERGHIFTDRILRARGREETMILGSASIAKTVKSLVP-- 152
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+V++ R S L S + IV FS +Y + + + R + ++V
Sbjct: 153 --EVEIIGRPRFSTLSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVV 207
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q F + + D LVA+DAIGMGLNL+++ + F++++KFDG R LT
Sbjct: 208 MGALSPRTRNAQVQMF--LNGDVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLT 265
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209
V E+ QIAGRAGR+ G L SED
Sbjct: 266 VAEMAQIAGRAGRHHKD---GTFGSLGSED 292
>gi|453330840|dbj|GAC87167.1| ATP-dependent DNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 871
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL+Q+++ +++ + R
Sbjct: 124 AVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKLVP----GIEIDTRTR 179
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS LV + S + IV FS +Y L + I R + C+++ G L P TR
Sbjct: 180 LSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIRRR-RGGCAVIMGQLSPRTRNA 236
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QIAGRA
Sbjct: 237 QVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTSPRPLFPQEIAQIAGRA 294
Query: 191 GR 192
GR
Sbjct: 295 GR 296
>gi|427410852|ref|ZP_18901054.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
gi|425710840|gb|EKU73860.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
Length = 981
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 13/210 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVT 59
M +SD+ +DE Q+ RG FT R L E + G + ++ ++
Sbjct: 95 MTGGLSDFAFVALDEAQLGADPERGHIFTDRILRARGREETMILGSASIAKTVKSLVP-- 152
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
+V++ R S L S + IV FS +Y + + + R + ++V
Sbjct: 153 --EVEIIGRPRFSTLSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVV 207
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q F + + D LVA+DAIGMGLNL+++ + F++++KFDG R LT
Sbjct: 208 MGALSPRTRNAQVQMF--LNGDVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLT 265
Query: 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209
V E+ QIAGRAGR+ G L SED
Sbjct: 266 VAEMAQIAGRAGRHHKD---GTFGSLGSED 292
>gi|402489731|ref|ZP_10836524.1| helicase [Rhizobium sp. CCGE 510]
gi|401811070|gb|EJT03439.1| helicase [Rhizobium sp. CCGE 510]
Length = 1081
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 13/203 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++ Q+L + + R
Sbjct: 100 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILLQLLP----GINIVERPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 156 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNS 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 213 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQVAGRA 270
Query: 191 GRY---GSKFPVGEVTCLDSEDL 210
GR+ G+ G+V+ D E +
Sbjct: 271 GRHVRDGTFGVTGQVSPFDEEQV 293
>gi|414341083|ref|YP_006982604.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
gi|411026418|gb|AFV99672.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
Length = 837
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PL+Q+++ +++ + R
Sbjct: 90 AVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKLVP----GIEIDTRTR 145
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS LV + S + IV FS +Y L + I R + C+++ G L P TR
Sbjct: 146 LSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIRRR-RGGCAVIMGQLSPRTRNA 202
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QIAGRA
Sbjct: 203 QVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTSPRPLFPQEIAQIAGRA 260
Query: 191 GR 192
GR
Sbjct: 261 GR 262
>gi|190893874|ref|YP_001980416.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
gi|190699153|gb|ACE93238.1| putative ATP-dependent DNA helicase protein [Rhizobium etli CIAT
652]
Length = 1056
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P++Q +L + + R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATMRPILQLLLP----GITIVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 LSHL--FYAGQKKITRLPQRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVALYQAGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G+V+ D E
Sbjct: 264 GRHVRDGTFGVTGQVSPFDEE 284
>gi|110635704|ref|YP_675912.1| helicase-like protein [Chelativorans sp. BNC1]
gi|110286688|gb|ABG64747.1| helicase-like protein [Chelativorans sp. BNC1]
Length = 1037
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT LL + E L G +++++L+ +
Sbjct: 97 TDAAFVAIDEVQLAADLERGHIFTDRLLNLRGRQETLLLGAGTMRGILEKMLR----GIS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + R+S L + + IV FS +Y + + I R + +IV G+L
Sbjct: 153 VVTRPRMSVLTYAGSK--KITRLPRRSAIVAFSADEVYAIGELIR-RQRGGAAIVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + R+LT E+
Sbjct: 210 PRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFAQNQKFDGFQYRELTAAELG 267
Query: 185 QIAGRAGRY 193
QIAGRAGR+
Sbjct: 268 QIAGRAGRH 276
>gi|442319534|ref|YP_007359555.1| helicase [Myxococcus stipitatus DSM 14675]
gi|441487176|gb|AGC43871.1| helicase [Myxococcus stipitatus DSM 14675]
Length = 799
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ + RG FT R L E G P++Q ++ ++
Sbjct: 94 DFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMRPMVQSLIP----HASLKR 149
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
RLS L S ++ +V FS +Y L +++ R + ++V G+L P T
Sbjct: 150 ANRLSQL--RYTGRKSLKSLPPRSAVVAFSADRVYELAESLR-RLRGGVAVVLGALSPRT 206
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E LVA+DAIGMGLNL+++ + F+ + K+DG E R+L E+ QIA
Sbjct: 207 RNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVAFAALSKYDGAEQRELFSDELAQIA 264
Query: 188 GRAGRYGSKFPVGEVTCLDSEDLPLLH 214
GRAGR+ + G + LP LH
Sbjct: 265 GRAGRHLNDGSFGMLNT-----LPELH 286
>gi|255261360|ref|ZP_05340702.1| MgpS [Thalassiobium sp. R2A62]
gi|255103695|gb|EET46369.1| MgpS [Thalassiobium sp. R2A62]
Length = 923
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH----LCGDPAAVPLIQQILQVTGDDVK 64
D IDEIQ+ + RG FT LL A LH + D + QI +V+
Sbjct: 87 DFVGIDEIQLCSDRERGHVFTDRLL--HARGLHETLFMGADTMRSAIAAQI-----PNVE 139
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
ER+S L S ++ IV FS +Y + + ++ R K ++V G+L
Sbjct: 140 FVHRERMSELTYTGQK--KISRMRERSAIVGFSVDNVYAIAELLK-RQKGGAAVVMGALS 196
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + + D LVA+DAIGMGLNL+I + FS ++KFDG ++R L E+
Sbjct: 197 PRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDIDHVAFSGLQKFDGRKMRYLMPNELA 254
Query: 185 QIAGRAGR---YGSKFPVGEVTCLD 206
QIAGRAGR G+ GE LD
Sbjct: 255 QIAGRAGRGMSNGTFGVTGEAPALD 279
>gi|114769352|ref|ZP_01446978.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
gi|114550269|gb|EAU53150.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
Length = 881
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT LL + + E G +I Q++ +V+ R
Sbjct: 93 AIDEIQLCGDPERGHVFTDRLLNMRGSMETLFLGADTMRKVIGQLIP----NVEFIFRSR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L S + + IV FS +Y + + + R K ++V G+L P TR
Sbjct: 149 FSDLEYTGTK--KTSRMPSRSAIVGFSVDNVYAVAELLR-RQKGGAAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL+I+ + FS++ KFDG +R L E+ QIAGRA
Sbjct: 206 QVELYQNG--DVDYLVATDAIGMGLNLDINHVAFSSLTKFDGRRMRYLMPNELAQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR+ G+ GE LD E + + P L+
Sbjct: 264 GRHLNSGTFGVTGEAPKLDQEVVEAIENHKFAPLKKLQ 301
>gi|339504398|ref|YP_004691818.1| helicase-like protein [Roseobacter litoralis Och 149]
gi|338758391|gb|AEI94855.1| helicase-like protein [Roseobacter litoralis Och 149]
Length = 933
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH----LCGDPAAVPLIQQILQVTGDDVK 64
D +DEIQ+ RG FT LL A LH L D P+ + L D ++
Sbjct: 89 DFLAVDEIQLCADPERGHVFTDRLL--RARGLHETLFLGADTMRGPI--RALVPNADFIQ 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ L+ + P + S ++ IV FS ++Y + + I R K ++V G+L
Sbjct: 145 RERMSTLTYIGPKKI-----SRMKPRSAIVGFSVESVYAIAELIR-RQKGGAAVVMGALS 198
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + E D LVA+DAIGMGLNL++ + FS++ KFDG +R L E+
Sbjct: 199 PRTRNAQVDMYQNG--EVDYLVATDAIGMGLNLDVDHVAFSSLAKFDGRRMRPLAPNELA 256
Query: 185 QIAGRAGR---YGSKFPVGEVTCLD 206
QIAGRAGR G+ G+ + LD
Sbjct: 257 QIAGRAGRGMKNGTFGVTGDASPLD 281
>gi|349699944|ref|ZP_08901573.1| DNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 870
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL +E G LI++++ ++++ R
Sbjct: 113 AVDEIQLCADPDRGHIFTDRLLHARGLSETMFLGADTIRNLIRRLVP----GIEIEHRPR 168
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + + IV FS +Y + + + R + C+IV G L P TR
Sbjct: 169 LSQLT--HAGACKLTRLPPRSAIVAFSAGEVYAIAELLRRR-RGGCAIVMGQLSPRTRNA 225
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN++++ + F+++ KFDG +R L E+ Q+AGRA
Sbjct: 226 QVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLSKFDGTRIRPLAAGEIAQVAGRA 283
Query: 191 GR 192
GR
Sbjct: 284 GR 285
>gi|323135912|ref|ZP_08070995.1| helicase domain protein [Methylocystis sp. ATCC 49242]
gi|322399003|gb|EFY01522.1| helicase domain protein [Methylocystis sp. ATCC 49242]
Length = 1018
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 104/223 (46%), Gaps = 13/223 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
+ D IDEIQ+ RG FT LL E L G PLI ++ +
Sbjct: 96 EVDFLAIDEIQLAADLDRGHVFTDRLLRWRGRQETLLIGADTMAPLIGELFP----GAPI 151
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
S RLS L S + IV FS +Y + + I+ R + ++V G+L P
Sbjct: 152 FSRPRLSRLTFAGDR--KISRLPPRTAIVAFSAEEVYAIAEWIK-RQRGGAAVVLGALSP 208
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D ++A+DAIGMGLNL++ + F++ +KFDG R LT E Q
Sbjct: 209 RTRNAQVELFQ--SGDVDYIIATDAIGMGLNLDVDYVAFASDRKFDGWRYRRLTPAEFGQ 266
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
IAGRAGR+ G G D E + L +P +L+
Sbjct: 267 IAGRAGRHMSDGQFGATGRCPPFDEELIEALEDHRFDPVALLQ 309
>gi|86137860|ref|ZP_01056436.1| helicase, putative [Roseobacter sp. MED193]
gi|85825452|gb|EAQ45651.1| helicase, putative [Roseobacter sp. MED193]
Length = 980
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 101/205 (49%), Gaps = 15/205 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGI-CANE-LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL NE L L D P+ + +V+
Sbjct: 89 DFLAIDEIQLCADPERGHVFTERLLNSRGTNETLFLGADTMRGPIKALV-----PEVEFL 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S LV S + IV FS +Y + + ++ R K ++V G+L P
Sbjct: 144 RRERMSELVYGGSK--KISRMPPRTAIVGFSVDNVYAIAELLK-RQKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS KFDG +R L E+ QI
Sbjct: 201 TRNAQVALYQNG--EVDYLVATDAIGMGLNLDIDHVAFSATSKFDGRRMRPLAPNELAQI 258
Query: 187 AGRAGR---YGSKFPVGEVTCLDSE 208
AGRAGR +GS G+ L+ E
Sbjct: 259 AGRAGRGMSHGSFGVTGDARPLEDE 283
>gi|159185362|ref|NP_355683.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
gi|159140613|gb|AAK88468.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
Length = 1032
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSAEEVYAIAELVR-RQRGGAAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|316931528|ref|YP_004106510.1| helicase domain-containing protein [Rhodopseudomonas palustris
DX-1]
gi|315599242|gb|ADU41777.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
Length = 1086
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+I+++L + + R
Sbjct: 104 AVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMRPMIERLLP----GASIVTRPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 160 LSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D L+A+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 217 QVAMFQ--SGDVDYLIATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFGQIAGRA 274
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR G+ G + E + L EP ML+
Sbjct: 275 GRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|110679117|ref|YP_682124.1| helicase [Roseobacter denitrificans OCh 114]
gi|109455233|gb|ABG31438.1| helicase, putative [Roseobacter denitrificans OCh 114]
Length = 944
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH----LCGDPAAVPLIQQILQVTGDDVK 64
D IDEIQ+ RG FT LL A LH L D P+ + L + ++
Sbjct: 89 DFLAIDEIQLCADPERGHVFTDRLL--RARGLHETLFLGADTMRGPI--RALVPNAEFIQ 144
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+ LS + P + S ++ IV FS +Y + + I R K ++V G+L
Sbjct: 145 RERMSTLSYIGPKKI-----SRMKPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALS 198
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + + E D LVA+DAIGMGLNL++ + FS++ KFDG +R L E+
Sbjct: 199 PRTRNAQVDMYQNG--EVDYLVATDAIGMGLNLDVDHVAFSSLTKFDGRRMRPLAPNELA 256
Query: 185 QIAGRAGR---YGSKFPVGEVTCLD 206
QIAGRAGR G+ G+ + LD
Sbjct: 257 QIAGRAGRGMKNGTFGVTGDASALD 281
>gi|418409168|ref|ZP_12982481.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
gi|358004485|gb|EHJ96813.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
Length = 1028
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSAEEVYAIAELVR-RQRGGAAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|335033685|ref|ZP_08527050.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
gi|333794976|gb|EGL66308.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
Length = 1033
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSAEEVYAIAELVR-RQRGGAAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|325294123|ref|YP_004279987.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
gi|325061976|gb|ADY65667.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
Length = 1028
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSAEEVYAIAELVR-RQRGGAAVVMGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|417858292|ref|ZP_12503349.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
gi|338824296|gb|EGP58263.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
Length = 1017
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELVR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|192288922|ref|YP_001989527.1| helicase domain-containing protein [Rhodopseudomonas palustris
TIE-1]
gi|192282671|gb|ACE99051.1| helicase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 1093
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 105/218 (48%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+I+++L + + R
Sbjct: 104 AVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMRPMIERLLP----GASIVTRPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 160 LSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D L+A+DAIGMGLNL++ + F++ +KFDG + R LT E QI GRA
Sbjct: 217 QVAMFQ--SGDVDYLIATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIGGRA 274
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR G+ G + E + L EP ML+
Sbjct: 275 GRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|296448356|ref|ZP_06890245.1| helicase domain protein [Methylosinus trichosporium OB3b]
gi|296254148|gb|EFH01286.1| helicase domain protein [Methylosinus trichosporium OB3b]
Length = 954
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D D +DEIQ+ RG FT R E L G PLI+++L +
Sbjct: 102 DVDFVAVDEIQLAADLDRGHVFTDRLAYWRGRQETLLIGAETMRPLIERLLP----GAPI 157
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + IV FS +Y + + I+ R + ++V G+L P
Sbjct: 158 FTRPRLSRLTFAGER--KLARLPPRSAIVAFSVEDVYAIAEWIK-RQRGGAAVVLGALSP 214
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL++ I F+ +KFDG+ R LT E Q
Sbjct: 215 RTRNAQVDLYQN--GDVDYLVATDAIGMGLNLDVDHIAFAADRKFDGLRHRRLTPAEFGQ 272
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
IAGRAGR+ G+ G D + + L +P +L+ +FD I
Sbjct: 273 IAGRAGRHMSDGAFGTTGRCPPFDEDLIEDLESHRFDPVTLLQWRNADLDFDSI 326
>gi|149916592|ref|ZP_01905106.1| helicase-like protein [Roseobacter sp. AzwK-3b]
gi|149809519|gb|EDM69379.1| helicase-like protein [Roseobacter sp. AzwK-3b]
Length = 958
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL + E G I + V G V+ S
Sbjct: 89 DFVAIDEIQLCADPERGHVFTDRLLRMRGLKETQFLGAATMRGAIAAL--VPG--VEFLS 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S L S + IV FS +Y + + ++ R K ++V G+L P T
Sbjct: 145 RERMSQLAYSGSK--KISKMPARSAIVGFSVDNVYAIAEVLK-RQKGGAAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I + FS++ KFDG +R L E+ QIA
Sbjct: 202 RNAQVALYQNG--DVDYLVATDAIGMGLNLDIDHVAFSSLSKFDGRRMRPLAPNELAQIA 259
Query: 188 GRAGR---YGSKFPVGEVTCLDSE 208
GRAGR +G+ GE L E
Sbjct: 260 GRAGRGMSHGTFGVTGEAPELSDE 283
>gi|393720050|ref|ZP_10339977.1| helicase domain-containing protein [Sphingomonas echinoides ATCC
14820]
Length = 844
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A +DE Q+ RG FT R L E L G A P+++ ++ +
Sbjct: 92 DKDLAFVALDEAQLGADPERGHVFTDRILRARGREETMLLGSEALRPMLKALVP----KI 147
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
++ + R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 148 EIINRPRFSTLTYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR-RLRGGAAVVMGAL 204
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q F + E D LVA+DAIGMGLN++++ + F+++ KFDG R L + E+
Sbjct: 205 SPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFASLNKFDGHRQRRLRIAEM 262
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 263 AQIAGRAGRH 272
>gi|294678314|ref|YP_003578929.1| helicase domain-containing protein [Rhodobacter capsulatus SB 1003]
gi|294477134|gb|ADE86522.1| helicase domain protein [Rhodobacter capsulatus SB 1003]
Length = 947
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVT 59
M +V +D+ IDEIQ+ RG FT LL + +E G A I ++
Sbjct: 57 MPEVGADF--VAIDEIQLCADPERGHVFTERLLYMRGLHETLFLGSDAMKGAIAALVP-- 112
Query: 60 GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
V+ ERLS L S ++ IV FS +Y + + I R K ++V
Sbjct: 113 --KVQFARRERLSKLSWAGSK--KISRMKPRAAIVGFSVENVYAIAELIR-RQKGGAAVV 167
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q + + + D LVA+DAIGMGLNL+I + FS KFDG +R L
Sbjct: 168 MGALSPRTRNAQVAMYQNG--DVDYLVATDAIGMGLNLDIEHVAFSATAKFDGRRMRHLF 225
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
E+ QIAGRAGR+ G+ GE L E + + + P
Sbjct: 226 PHELGQIAGRAGRHTTDGTFGITGEAHPLPEEVIEAIEEHRFAP 269
>gi|424911485|ref|ZP_18334862.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847516|gb|EJB00039.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 1027
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELVR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|408786434|ref|ZP_11198171.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
gi|408487806|gb|EKJ96123.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
Length = 1027
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELVR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|254510321|ref|ZP_05122388.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
gi|221534032|gb|EEE37020.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
Length = 929
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA---NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT LL CA NE G I ++ + +
Sbjct: 82 DFVAIDEIQLCADPERGHVFTDRLL--CARGTNETLFLGSDTMRGTIAALVP----EAQF 135
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER+S LV S + IV FS +Y + + + R K ++V G+L P
Sbjct: 136 VRRERMSQLVYSGSR--KISRMPARSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSP 192
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + E D LVA+DAIGMGLNL+++ + FS++ KFDG +R L E+ Q
Sbjct: 193 RTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDVNHVAFSSLTKFDGRRMRPLAPNELAQ 250
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR G+ GE LD
Sbjct: 251 IAGRAGRGMSDGTFGVTGEAPPLD 274
>gi|58040347|ref|YP_192311.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
gi|58002761|gb|AAW61655.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
Length = 815
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT LL E G PL+Q++ V G ++ +++ R
Sbjct: 67 AIDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKL--VPGIEIDIRT--R 122
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + S + IV FS +Y L + I R + C+++ G L P TR
Sbjct: 123 LSSLA--STGHTKLSRLPPRSAIVAFSMSEVYALAEVIRRR-RGGCAVIMGQLSPRTRNA 179
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QIAGRA
Sbjct: 180 QVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTVPRPLFPQEIAQIAGRA 237
Query: 191 GR 192
GR
Sbjct: 238 GR 239
>gi|418297917|ref|ZP_12909757.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355537287|gb|EHH06547.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 1026
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E L G P+++++L + V R
Sbjct: 93 AIDEVQLAGDLERGHIFTDRVLHLRGREETLLLGAGTMRPILEKLLP----GITVVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRTAIVAFSADEVYAIAELVR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQSGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGEIGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHLRDGTFGVTGRVDPFDDE 284
>gi|159043335|ref|YP_001532129.1| helicase domain-containing protein [Dinoroseobacter shibae DFL 12]
gi|157911095|gb|ABV92528.1| helicase domain protein [Dinoroseobacter shibae DFL 12]
Length = 987
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L E G I ++ +
Sbjct: 89 DFLAVDEIQLCADPERGHVFTDRLLRARGLQETLFLGAETMRGAISALVP----KAQFLR 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L S ++ IV FS +Y + + I R K C++V G+L P T
Sbjct: 145 RERFSELTYTGAK--KISRMKPRSAIVGFSVDNVYAMAELIR-RQKGGCAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+++ + FS++ KFDG +R L E+ QIA
Sbjct: 202 RNAQVDLYQNG--DVDYLVATDAIGMGLNLDVAHVAFSSLSKFDGRRMRALAPNELAQIA 259
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 220
GRAGRY G+ GE + E + + S P
Sbjct: 260 GRAGRYMTPGTFGVTGEAPEITPEVVAAIEASRFTP 295
>gi|150398309|ref|YP_001328776.1| helicase domain-containing protein [Sinorhizobium medicae WSM419]
gi|150029824|gb|ABR61941.1| helicase domain protein [Sinorhizobium medicae WSM419]
Length = 1026
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 10/205 (4%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ G RG FT +L + E G P+++ +L + V R
Sbjct: 98 AIDEVQLAGDLERGHIFTDRVLHLRGRGETLFLGAATMRPILEYLLP----GITVVERPR 153
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
+S L L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 154 MSQL--LYAGSKKITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 210
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + + D LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ Q+AGRA
Sbjct: 211 QVALYQEG--DVDYLVATDAIGMGLNLDVDHVAFAQDRKFDGYQYRNLNPAELAQVAGRA 268
Query: 191 GRYGSKFPVGEVTCLDSEDLPLLHK 215
GR+ G +D + L+H+
Sbjct: 269 GRHVRDGTFGVTGRVDPFEEELVHR 293
>gi|346992360|ref|ZP_08860432.1| helicase, putative [Ruegeria sp. TW15]
Length = 928
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 99/202 (49%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT R L NE G I ++ + +
Sbjct: 82 DFVAIDEIQLCADPERGHVFTDRLLRSRGTNETLFLGSDTMRGAIAALVP----EAQFVR 137
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S LV S + + IV FS +Y + + + R K ++V G+L P T
Sbjct: 138 RERMSQLVYSGSK--KISRMPSRSAIVGFSVDNVYAIAELLR-RQKGGAAVVMGALSPRT 194
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLNL+++ + FS++ KFDG +R L E+ QIA
Sbjct: 195 RNAQVDLYQNG--EVDYLVATDAIGMGLNLDVNHVAFSSLTKFDGRRMRPLAPNELAQIA 252
Query: 188 GRAGRY---GSKFPVGEVTCLD 206
GRAGR G+ GE LD
Sbjct: 253 GRAGRGMSDGTFGVTGEAPPLD 274
>gi|254451167|ref|ZP_05064604.1| helicase, putative [Octadecabacter arcticus 238]
gi|198265573|gb|EDY89843.1| helicase, putative [Octadecabacter arcticus 238]
Length = 951
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 108/221 (48%), Gaps = 13/221 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ G RG FT LL + +E G I ++ D VK
Sbjct: 79 DFVAIDEIQLCGDLDRGHVFTDRLLRMRGLHETLFMGAETMWGAIASMVP-EADFVK--- 134
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L S + IV FS +Y + + + R K ++V G+L P T
Sbjct: 135 RERFSTLTYSGSK--KISRMPPRSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSPRT 191
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I + FS++ K+DG +R L E+ QIA
Sbjct: 192 RNAQVEMYQNG--DVDYLVATDAIGMGLNLDIDHVAFSSITKYDGRRMRHLMPNELAQIA 249
Query: 188 GRAGRYGSK--FPV-GEVTCLDSEDLPLLHKSLLEPSPMLE 225
GRAGR+ +K F V GE LD + + + + P L+
Sbjct: 250 GRAGRFMNKGTFGVTGEAPTLDDDVVQAIQNNQFAPVKKLQ 290
>gi|126733169|ref|ZP_01748916.1| helicase, putative [Roseobacter sp. CCS2]
gi|126716035|gb|EBA12899.1| helicase, putative [Roseobacter sp. CCS2]
Length = 944
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL +E G ++ + D
Sbjct: 88 DFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFLG----AETMRNAISAMVPDAHFMR 143
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S L S + IV FS +Y + + + R K ++V G+L P T
Sbjct: 144 RERMSQLTYSGS--KKISRMPARSAIVGFSVENVYAIAELLR-RTKGGAAVVMGALSPRT 200
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+IS + FS++ KFDG +R L E+ QIA
Sbjct: 201 RNAQVEMYQNG--DVDYLVATDAIGMGLNLDISHVAFSSLTKFDGRRMRHLQPEELAQIA 258
Query: 188 GRAGRY---GSKFPVGEVTCLD 206
GRAGR+ G+ GE LD
Sbjct: 259 GRAGRHIENGTFGVTGEAPPLD 280
>gi|260427627|ref|ZP_05781606.1| MgpS [Citreicella sp. SE45]
gi|260422119|gb|EEX15370.1| MgpS [Citreicella sp. SE45]
Length = 996
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 98/202 (48%), Gaps = 18/202 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL + L L D P+ + +
Sbjct: 89 DFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLGSDTMRGPIAALV-----KGCEFI 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S L L S + IV FS +Y + + I R K ++V G+L P
Sbjct: 144 RRERMSQLSYLGSK--KISRMPARSAIVGFSVDNVYAIAELIR-RTKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS++ KFDG +R+L E+ QI
Sbjct: 201 TRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLTKFDGRRMRELQPNELAQI 258
Query: 187 AGRAGR------YGSKFPVGEV 202
AGRAGR +G+ G++
Sbjct: 259 AGRAGRGMKPGTFGTTGDAGQI 280
>gi|126738722|ref|ZP_01754418.1| helicase, putative [Roseobacter sp. SK209-2-6]
gi|126719903|gb|EBA16610.1| helicase, putative [Roseobacter sp. SK209-2-6]
Length = 579
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL L L D P+ + V+
Sbjct: 89 DFLAIDEIQLCADPERGHVFTERLLRARGTHETLFLGADTMRGPIAALV-----PGVEFL 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S LV S + IV FS +Y + + ++ R K ++V G+L P
Sbjct: 144 RRERMSELVYGGSK--KISRMPPRTAIVGFSVDNVYAIAELLK-RQKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS KFDG +R L E+ QI
Sbjct: 201 TRNAQVALYQNG--EVDYLVATDAIGMGLNLDIDHVAFSATSKFDGRRMRPLAPNELAQI 258
Query: 187 AGRAGR---YGSKFPVGEVTCLDSE 208
AGRAGR +GS G+ L+ E
Sbjct: 259 AGRAGRGMSHGSFGVTGDARPLEDE 283
>gi|400753596|ref|YP_006561964.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
gi|398652749|gb|AFO86719.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
Length = 1005
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D +DEIQ+ RG FT LL + L L D P+ + V+
Sbjct: 94 DFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLGADTMRGPIAALV-----PGVQFL 148
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ERLS LV S + IV FS +Y + + + R K ++V G+L P
Sbjct: 149 RRERLSDLVYSGSK--KLSRMPARTAIVGFSIDNVYAIAELLR-RQKGGAAVVMGALSPR 205
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS++ KFDG +R L E+ QI
Sbjct: 206 TRNAQVELYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLTKFDGRRMRQLAPNELAQI 263
Query: 187 AGRAGR 192
AGRAGR
Sbjct: 264 AGRAGR 269
>gi|408376344|ref|ZP_11173949.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
gi|407749811|gb|EKF61322.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
Length = 1012
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ G RG FT LL + E L G ++ Q+L + + R
Sbjct: 93 AIDEIQLAGDLERGHIFTDRLLHLRGREETLLLGSSTMKSILIQLLP----GITIVERPR 148
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 149 LSQL--FYAGQKKITRLPQRAAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 205
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E+ LVA+DAIGMGLNL++ + F+ +KFDG + R+L E+ QIAGRA
Sbjct: 206 QVGLYQEGDVEY--LVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRA 263
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ G+ G V D E
Sbjct: 264 GRHIKDGTFGVTGRVAPFDEE 284
>gi|399991959|ref|YP_006572199.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656514|gb|AFO90480.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 1005
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D +DEIQ+ RG FT LL + L L D P+ + V+
Sbjct: 94 DFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLGADTMRGPIAALV-----PGVQFL 148
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ERLS LV S + IV FS +Y + + + R K ++V G+L P
Sbjct: 149 RRERLSDLVYSGSK--KLSRMPARTAIVGFSIDNVYAIAELLR-RQKGGAAVVMGALSPR 205
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS++ KFDG +R L E+ QI
Sbjct: 206 TRNAQVELYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLTKFDGRRMRQLAPNELAQI 263
Query: 187 AGRAGR 192
AGRAGR
Sbjct: 264 AGRAGR 269
>gi|357385955|ref|YP_004900679.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
gi|351594592|gb|AEQ52929.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
Length = 991
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 116/251 (46%), Gaps = 20/251 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ RG FT LL E L G P+I+++L ++
Sbjct: 91 DFLAIDEIQTATDFDRGHVFTDRLLHARGRAETLLLGAQTMEPVIRRLLP----HAEITF 146
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R S L S + IV FS +Y + + + R + ++V GSL P T
Sbjct: 147 RPRFSQLSWAGSR--KISRLPRRSAIVAFSASEVYAIAELLR-RERGGAAVVMGSLSPRT 203
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q F + + D LVA+DAIGMGLNL+++ + F++ K+DG + R LT E+ QIA
Sbjct: 204 RNAQVDLFQNG--DVDFLVATDAIGMGLNLDVTHVAFASDSKYDGRQFRPLTPAEIGQIA 261
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM-YSRLH 243
GRAGR+ G+ G D E + L P L+ + N DL + S LH
Sbjct: 262 GRAGRHMRDGTFGVTGGTDAFDEETIAALEAHDFAPVKQLQ----WRNRDLDFRSLSALH 317
Query: 244 PDSSLYGILEH 254
+SL EH
Sbjct: 318 --ASLEITPEH 326
>gi|221638836|ref|YP_002525098.1| MgpS protein [Rhodobacter sphaeroides KD131]
gi|221159617|gb|ACM00597.1| MgpS [Rhodobacter sphaeroides KD131]
Length = 956
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ G RG FT LL G+ + L D +++ + V
Sbjct: 83 DFVAVDEIQLCGDPERGHVFTDRLLRARGLVET-MFLGSD-----VMRGAIAALVPHVTF 136
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 137 LRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSP 193
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ Q
Sbjct: 194 RTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 251
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR+ G+ GE + LD
Sbjct: 252 IAGRAGRHTEAGTFGVTGEASPLD 275
>gi|332557856|ref|ZP_08412178.1| MgpS [Rhodobacter sphaeroides WS8N]
gi|332275568|gb|EGJ20883.1| MgpS [Rhodobacter sphaeroides WS8N]
Length = 962
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ G RG FT LL G+ + L D +++ + V
Sbjct: 89 DFVAVDEIQLCGDPERGHVFTDRLLRARGLVET-MFLGSD-----VMRGAIAALVPHVTF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 143 LRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ Q
Sbjct: 200 RTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 257
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR+ G+ GE + LD
Sbjct: 258 IAGRAGRHTEAGTFGVTGEASPLD 281
>gi|429206635|ref|ZP_19197900.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
gi|428190395|gb|EKX58942.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
Length = 955
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ G RG FT LL G+ + L D +++ + V
Sbjct: 89 DFVAVDEIQLCGDPERGHVFTDRLLRARGLVET-MFLGSD-----VMRGAIAALVPHVTF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 143 LRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ Q
Sbjct: 200 RTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 257
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR+ G+ GE + LD
Sbjct: 258 IAGRAGRHTEAGTFGVTGEASPLD 281
>gi|217979370|ref|YP_002363517.1| helicase domain-containing protein [Methylocella silvestris BL2]
gi|217504746|gb|ACK52155.1| helicase domain protein [Methylocella silvestris BL2]
Length = 1139
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D D +DEIQ+ RG FT LL +E L G L++++L V++
Sbjct: 99 DLDFVAVDEIQLAADLDRGHVFTDRLLHHRGRSETLLIGAATMHRLVRELLP----GVRI 154
Query: 66 QSYERLSPLVPLNVPLGSFSN------IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
RLS L SF+ + IV FS +Y + + I R + ++V
Sbjct: 155 FERPRLSKL--------SFAGERKMTRLPRRSAIVAFSAEDVYAIAEWIR-RQRGGAAVV 205
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
G+L P TR Q F + + D +VA+DA+GMGLNL++ I F++ +KFDG + R LT
Sbjct: 206 LGALSPRTRNAQVDMFQN--GDVDYIVATDAVGMGLNLDVEHIAFASDRKFDGWQFRRLT 263
Query: 180 VPEVKQIAGRAGRY 193
E QIAGRAGR+
Sbjct: 264 PAEFGQIAGRAGRH 277
>gi|452965358|gb|EME70382.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 817
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL E G PLI++++ V+ S R
Sbjct: 89 AVDEIQLCADPERGHIFTDRLLHARGEAETLFLGAETIKPLIRRLVP----GVEFMSRPR 144
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L +V + +V FS +Y + + + R + ++V G+L P TR
Sbjct: 145 FSQLT--HVGAKKLGRLPPRSVLVAFSASEVYAMAEFVR-RSRGGAAVVLGALSPRTRNA 201
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D +VA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIAGRA
Sbjct: 202 QVGLYQ--AGEVDYIVATDAIGMGLNMDVDHVAFAALRKFDGRAPRPLEPAEIAQIAGRA 259
Query: 191 GRYGSKFPVGEVTCLDSEDLP 211
GR+ + G T +D+ +P
Sbjct: 260 GRHMNDGTFG--TTMDAGTIP 278
>gi|1103724|emb|CAA90562.1| MgpS [Rhodobacter sphaeroides]
Length = 930
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ G RG FT LL G+ + L D +++ + V
Sbjct: 64 DFVAVDEIQLCGDPERGHVFTDRLLRARGLVET-MFLGSD-----VMRGAIAALVPHVTF 117
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 118 LRRERFSTLSYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSP 174
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ Q
Sbjct: 175 RTRNAQVAPYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 232
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR+ G+ GE + LD
Sbjct: 233 IAGRAGRHTEAGTFGVTGEASPLD 256
>gi|89055802|ref|YP_511253.1| helicase-like protein [Jannaschia sp. CCS1]
gi|88865351|gb|ABD56228.1| helicase-like protein [Jannaschia sp. CCS1]
Length = 978
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
S D +DEIQ+ RG FT LL A LH A + I ++
Sbjct: 87 TASGADFLAVDEIQLCADPERGHVFTDRLL--HARGLHETLFMGASTMRNAIAELV-PHC 143
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ +R S LV S I IV FS +Y + + R K ++V G+L
Sbjct: 144 EFMHRDRFSQLVYAGSK--KMSRIPGRSAIVGFSVENLYATAELLR-RTKGGAAVVMGAL 200
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D+LVA+DAIGMGLNL+I + FS +KFDG ++R+L E+
Sbjct: 201 SPRTRNAQVELYQNG--DVDILVATDAIGMGLNLDIKHVAFSGTRKFDGRKMRELWPNEL 258
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLD 206
QIAGRAGR+ GS GE D
Sbjct: 259 AQIAGRAGRHTQDGSFGVTGEAEPFD 284
>gi|381166736|ref|ZP_09875950.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380684309|emb|CCG40762.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 824
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 13/201 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT LL E G PL+++++ +++ + R
Sbjct: 95 AIDEIQLCADPERGHVFTDRLLHARGEAETAFLGADTIRPLLRRLVP----EIEFVARPR 150
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L+ + + +V FS +Y L +++ R + ++V G+L P TR
Sbjct: 151 LSNLI--HTGPRKLDRLPPRSVVVAFSASEVYALAESVR-RARGGVAVVLGALSPRTRNA 207
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D +VA+DAIGMGLNL++ + F+++ KFDG R L E+ QIAGRA
Sbjct: 208 QVGLYQ--TGEVDYIVATDAIGMGLNLDVDHVAFASLSKFDGRAPRPLAPAEIAQIAGRA 265
Query: 191 GRY---GSKFPVGEVTCLDSE 208
GR+ GS + LD++
Sbjct: 266 GRHMNDGSFGTTADAGPLDTD 286
>gi|393722943|ref|ZP_10342870.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26605]
Length = 838
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A +DE Q+ RG FT R L E L G + P+++ ++ +
Sbjct: 87 DKDLAFVALDEAQLGADPERGHVFTDRILRARGREETMLLGSESLRPMLKALVP----GI 142
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
++ + R S L S + IV FS +Y + + + R + ++V G+L
Sbjct: 143 EIINRPRFSTLSYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR-RLRGGAAVVMGAL 199
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q F + E D LVA+DAIGMGLN++++ + F+++ KFDG R L V E+
Sbjct: 200 SPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFASLNKFDGHRQRRLRVAEM 257
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 258 AQIAGRAGRH 267
>gi|163747408|ref|ZP_02154760.1| helicase, putative [Oceanibulbus indolifex HEL-45]
gi|161379261|gb|EDQ03678.1| helicase, putative [Oceanibulbus indolifex HEL-45]
Length = 730
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH---LCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT LL A LH G I ++ V
Sbjct: 89 DFVAIDEIQLCADPERGHVFTDRLL--RARGLHETLFMGSDTMRGTIAALVP----GVDF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+R+S LV S ++ IV FS +Y + + I R K ++V G+L P
Sbjct: 143 MRRDRMSELVYSGQK--KISRMKPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + E D LVA+DAIGMGLNL++ + FS + KFDG +R L E+ Q
Sbjct: 200 RTRNAQVEMYQNG--EVDYLVATDAIGMGLNLDVDHVAFSALSKFDGRRMRPLAPNELAQ 257
Query: 186 IAGRAGR---YGSKFPVGEVTCLD 206
IAGRAGR G+ G+ LD
Sbjct: 258 IAGRAGRGFKSGTFGTTGDAPALD 281
>gi|77462980|ref|YP_352484.1| ATP-dependent helicase, MgpS [Rhodobacter sphaeroides 2.4.1]
gi|77387398|gb|ABA78583.1| putative ATP-dependent helicase, MgpS [Rhodobacter sphaeroides
2.4.1]
Length = 930
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ G RG FT LL G+ + L D +++ + V
Sbjct: 64 DFVAVDEIQLCGDPERGHVFTDRLLRARGLVET-MFLGSD-----VMRGAIAALVPHVTF 117
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER S L S + IV FS +Y + + I R K C++V G+L P
Sbjct: 118 LRRERFSTLSYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSP 174
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ Q
Sbjct: 175 RTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 232
Query: 186 IAGRAGRY---GSKFPVGEVTCLD 206
IAGRAGR+ G+ GE + LD
Sbjct: 233 IAGRAGRHTEAGTFGVTGEASPLD 256
>gi|254487437|ref|ZP_05100642.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
gi|214044306|gb|EEB84944.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
Length = 968
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 95/194 (48%), Gaps = 28/194 (14%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELH---------LCGDPAA-VPLIQQILQV 58
D +DEIQ+ RG FT LL + LH + G AA VP Q I +
Sbjct: 82 DLVAVDEIQLCADPERGHVFTDRLL--RSRGLHETLFMGADTMRGTIAALVPKAQFIKR- 138
Query: 59 TGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 118
ER+S L V S ++ IV FS +Y + + I R K ++
Sbjct: 139 ----------ERMSELT--YVGQKKISRMRPRSAIVGFSVENVYAIAELIR-RQKGGAAV 185
Query: 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 178
V G+L P TR Q + S E D LVA+DAIGMGLNL++ + FS + KFDG +R L
Sbjct: 186 VMGALSPRTRNAQVEMYQ--SGEVDYLVATDAIGMGLNLDVDHVAFSALSKFDGRRMRQL 243
Query: 179 TVPEVKQIAGRAGR 192
E+ QIAGRAGR
Sbjct: 244 APNELAQIAGRAGR 257
>gi|407975288|ref|ZP_11156194.1| helicase-like protein [Nitratireductor indicus C115]
gi|407429373|gb|EKF42051.1| helicase-like protein [Nitratireductor indicus C115]
Length = 1002
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L +
Sbjct: 97 TDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLP----GLS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + R+S L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VITRPRMSVLTYAGSR--KITRLPRRSAIVAFSSDEVYAIGELIR-RQRGGVAVVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDL E+
Sbjct: 210 PRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFAQNRKFDGFQYRDLNAAELG 267
Query: 185 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
QIAGRAGR+ G+ G+V + + + EP+ +L+ NFD
Sbjct: 268 QIAGRAGRHLRDGTFGVTGQVDPFPDDLVQRIEAHQFEPAKVLQW--RTANFDF 319
>gi|23014814|ref|ZP_00054612.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 384
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 12/197 (6%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L E G PLI++++ V+ S R
Sbjct: 89 AVDEIQLCADPERGHIFTDRLLHARGETETLFLGAETIKPLIRRLVP----GVEFMSRPR 144
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L +V + +V FS +Y + + + R + ++V G+L P TR
Sbjct: 145 FSQLT--HVGAKKLGRLPPRSVLVAFSAAEVYAMAEFVR-RSRGGAAVVLGALSPRTRNA 201
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D +VA+DAIGMGLN+++ + F++++KFDG R L E+ QIAGRA
Sbjct: 202 QVGMYQ--AGEVDYIVATDAIGMGLNMDVDHVAFASLRKFDGRSPRPLEPTEIAQIAGRA 259
Query: 191 GRYGSKFPVGEVTCLDS 207
GR+ + G T LD+
Sbjct: 260 GRHMNDGTFG--TTLDA 274
>gi|75674607|ref|YP_317028.1| helicase [Nitrobacter winogradskyi Nb-255]
gi|74419477|gb|ABA03676.1| helicase [Nitrobacter winogradskyi Nb-255]
Length = 1124
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
D D A IDEIQ+ RG FT R L +E L G P++++IL
Sbjct: 98 DLDVAFLAIDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMRPIVERILP----GA 153
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ + RLS L + +T IV FS +Y + + I R + ++V GSL
Sbjct: 154 SIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQRGGAAVVLGSL 210
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E
Sbjct: 211 SPRTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEF 268
Query: 184 KQIAGRAGR 192
QIAGRAGR
Sbjct: 269 AQIAGRAGR 277
>gi|144898949|emb|CAM75813.1| Helicase, C-terminal [Magnetospirillum gryphiswaldense MSR-1]
Length = 820
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT LL + E G PL++++ V G V+ S R
Sbjct: 90 AVDEIQLCADPERGHIFTDRLLNARGSEETVFLGAETIKPLMRRL--VPG--VEYSSRPR 145
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + +V FS +Y + + + R + ++V G+L P TR
Sbjct: 146 LSSLTYAGAK--KLNRLPPRSAVVAFSASEVYAMAEYVR-RQRGGAAVVLGALSPRTRNA 202
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D +VA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIAGRA
Sbjct: 203 QIGLYQ--AGEVDYIVATDAIGMGLNMDVDHVAFAGLRKFDGRSPRPLAATEIAQIAGRA 260
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GR+ G+ ++ +D++ + + +P L + N DL +
Sbjct: 261 GRHMNDGTFGTTADIAGIDADVVEAVENHKFQPLAALS----WRNADLRF 306
>gi|298293649|ref|YP_003695588.1| helicase [Starkeya novella DSM 506]
gi|296930160|gb|ADH90969.1| helicase domain protein [Starkeya novella DSM 506]
Length = 1161
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 7 DYDCA--VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDV 63
D D A +DEIQ+ RG FT +L + E L G PL++++L V
Sbjct: 104 DLDVAFVALDEIQIAADLDRGHVFTDRMLNLRGREETLLLGAATMRPLVEKLLP----GV 159
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+ RLS L + + IV FS +Y + + I R + ++V G+L
Sbjct: 160 SILGRPRLSNLTFAGEK--KITRLPRRSAIVAFSADEVYAIAELIR-RQRGGAAVVLGAL 216
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D LVA+DAIGMGLNL++ + F+ KFDG + R L E+
Sbjct: 217 SPRTRNAQVAMYQNG--DVDYLVATDAIGMGLNLDVDHVAFAGDVKFDGWQFRKLNPGEL 274
Query: 184 KQIAGRAGRY---GSKFPVGEVTCLDSE 208
QIAGRAGR G+ G T D+E
Sbjct: 275 AQIAGRAGRAQRDGTFGTTGRCTPFDAE 302
>gi|338972201|ref|ZP_08627577.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234593|gb|EGP09707.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
Length = 1108
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L V +
Sbjct: 108 DVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVNI 163
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + +T IV FS +Y + + I R ++V GSL P
Sbjct: 164 VTRPRLSQLEFVGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 220
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 221 RTRNAQVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQ 278
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 279 IAGRAGR 285
>gi|254441763|ref|ZP_05055256.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
gi|198251841|gb|EDY76156.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
Length = 971
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 107/221 (48%), Gaps = 13/221 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D IDEIQ+ RG FT LL + +E G I ++ D VK
Sbjct: 93 DFVAIDEIQLCADLDRGHVFTDRLLRMRGLHETLFMGAETMWGAIASMVP-EADFVK--- 148
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L S + IV FS +Y + + + R K ++V G+L P T
Sbjct: 149 RERFSTLTYTGSK--KISRMPPRSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSPRT 205
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I + FS++ K+DG +R L E+ QIA
Sbjct: 206 RNAQVEMYQNG--DVDYLVATDAIGMGLNLDIDHVAFSSITKYDGRRMRHLMPNELAQIA 263
Query: 188 GRAGRYGSK--FPV-GEVTCLDSEDLPLLHKSLLEPSPMLE 225
GRAGRY +K F V G+ LD + + + + P L+
Sbjct: 264 GRAGRYMNKGTFGVTGDAPTLDDDVVQAIQNNQFAPVKKLQ 304
>gi|414169083|ref|ZP_11424920.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
gi|410885842|gb|EKS33655.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
Length = 1094
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L V +
Sbjct: 100 DVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVNI 155
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + +T IV FS +Y + + I R ++V GSL P
Sbjct: 156 VTRPRLSQLEFVGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 212
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 213 RTRNAQVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQ 270
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 271 IAGRAGR 277
>gi|99080414|ref|YP_612568.1| helicase-like protein [Ruegeria sp. TM1040]
gi|99036694|gb|ABF63306.1| helicase-like protein [Ruegeria sp. TM1040]
Length = 984
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT LL G+ L L D P+ + V+
Sbjct: 89 DFLAIDEIQLCADPERGHVFTDRLLRSRGM-KETLFLGADTMRGPIAALV-----PGVEF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER+S LV S + IV FS ++Y + + I R K ++V G+L P
Sbjct: 143 VRRERMSELVYAGSK--KISRMPPRTAIVGFSVDSVYAIAELIR-RQKGGAAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + E D LVA+DAIGMGLNL++ + FS KFDG +R L E+ Q
Sbjct: 200 RTRNAQVALYQN--GEVDYLVATDAIGMGLNLDVDHVAFSATSKFDGRRMRPLAPNELAQ 257
Query: 186 IAGRAGR---YGSKFPVGEVTCLD 206
IAGRAGR +GS G+ L+
Sbjct: 258 IAGRAGRGMSHGSFGVTGDARPLE 281
>gi|407782965|ref|ZP_11130172.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
gi|407203875|gb|EKE73858.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
Length = 919
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 13/196 (6%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ + RG FT LL +E G PL+++++ + + R
Sbjct: 100 AVDEIQLCADRERGHVFTDRLLNARGLDETMFLGAETIRPLLKRLIP----EAHFVTRPR 155
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L + + +V FS +Y L + + R + ++V G+L P R
Sbjct: 156 FSTLSYTGYK--KVTRLPRRSAVVAFSAADVYSLAELVR-RQRGGTAVVLGALSPRARNA 212
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R LT PE+ QIAGRA
Sbjct: 213 QVEMYQ--AGEVDYLVATDAIGMGLNMDLDHVAFARLGKFDGRGPRRLTAPELAQIAGRA 270
Query: 191 GRYGSKFPVG---EVT 203
GR+ S G EVT
Sbjct: 271 GRHMSDGTFGVTAEVT 286
>gi|304394149|ref|ZP_07376072.1| putative helicase [Ahrensia sp. R2A130]
gi|303293589|gb|EFL87966.1| putative helicase [Ahrensia sp. R2A130]
Length = 1073
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 17/230 (7%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG +FT LL + +E L G P ++ +L + + + R
Sbjct: 109 AIDEVQIATNLDRGHTFTDRLLNLRGTHETMLLGSAILRPALEALLP----GINIVTRPR 164
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + IV FS +Y + + I R + ++V GSL P TR
Sbjct: 165 LSQLHYAGSK--KITRLPRRSAIVAFSADEVYAIAELIR-RQRGAAAVVLGSLSPRTRNA 221
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D LVA+DAIGMGLNL++ + F+ KFDG R L E QIAGRA
Sbjct: 222 QVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQDSKFDGYTHRRLKPAEFAQIAGRA 279
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GR+ G+ G V + E + L P +L+ + N DL +
Sbjct: 280 GRHLRDGTFGVTGNVDPFEDELVKRLEAHEFPPEKLLQ----WRNRDLDF 325
>gi|83313344|ref|YP_423608.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82948185|dbj|BAE53049.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 808
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E G PLI++++ V+ S R
Sbjct: 89 AVDEIQLCADPERGHIFTDRLLHARGESETLFLGAETIRPLIRRLVP----GVEFMSRPR 144
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
S L +V + +V FS +Y + + + R + ++V G+L P TR
Sbjct: 145 FSQLT--HVGAKKLGRLPPRSVLVAFSAAEVYAMAEFVR-RSRGGAAVVLGALSPRTRNA 201
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D +VA+DAIGMGLN+++ + F+ ++KFDG R L E+ QIAGRA
Sbjct: 202 QVGMYQ--AGEVDYIVATDAIGMGLNMDVDHVAFAALRKFDGRAPRPLEPTEIAQIAGRA 259
Query: 191 GRY 193
GR+
Sbjct: 260 GRH 262
>gi|83955685|ref|ZP_00964265.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
gi|83839979|gb|EAP79155.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
Length = 968
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L +E G I ++ + +
Sbjct: 82 DLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMGSDTMRGSIAALVP----EAQFIR 137
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S L+ S ++ IV FS +Y + + I R K ++V G+L P T
Sbjct: 138 RERMSELIYSGQK--KISRMRPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALSPRT 194
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLNL++ + FS + KFDG +R L E+ QIA
Sbjct: 195 RNAQVAMYQNG--EVDYLVATDAIGMGLNLDVDHVAFSALSKFDGRRMRPLAPNELAQIA 252
Query: 188 GRAGR---YGSKFPVGEVTCLD 206
GRAGR G+ G+ + LD
Sbjct: 253 GRAGRGFKSGTFGVTGDASPLD 274
>gi|126727499|ref|ZP_01743333.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
gi|126703279|gb|EBA02378.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
Length = 930
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L +E G I ++ + +
Sbjct: 104 DFVAVDEIQLCADPERGHVFTDRLLHARGRHETLFMGADTMRSAIAGLIP----EAQFLY 159
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+R S L S ++ IV FS ++Y + + I R K ++V G+L P T
Sbjct: 160 RDRFSTLTYTGSR--KISRMKPRSAIVGFSVDSVYSIAEWIR-RQKGGAAVVMGALSPRT 216
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E+ LVA+DAIGMGLNL+I I FS KFDG +R L E+ QIA
Sbjct: 217 RNAQVEMYQNGDVEY--LVATDAIGMGLNLDIDHIAFSGTVKFDGHRMRPLQPNEMAQIA 274
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GRAGRY G+ GE LD + + K P L+
Sbjct: 275 GRAGRYMNAGTFGVTGEAEPLDDALVEAIEKHQFPPVTRLQ 315
>gi|85704958|ref|ZP_01036058.1| helicase, putative, partial [Roseovarius sp. 217]
gi|85670280|gb|EAQ25141.1| helicase, putative, partial [Roseovarius sp. 217]
Length = 733
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL + E G ++Q + V+ S
Sbjct: 89 DFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLGSHT----MRQTIAALVPGVEFLS 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R+S L + + IV FS +Y + + + R K ++V G+L P T
Sbjct: 145 RARMSQLTYTGPK--KIAKMPARSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I+ + FS++ KFDG +R L E+ QIA
Sbjct: 202 RNAQVELYQNG--DVDYLVATDAIGMGLNLDINHVAFSSLSKFDGRRMRYLQPNELGQIA 259
Query: 188 GRAGR---YGSKFPVGEVTCLDSE 208
GRAGR G+ GE LD E
Sbjct: 260 GRAGRGMSNGTFGVTGEAPDLDPE 283
>gi|83941126|ref|ZP_00953588.1| helicase, putative [Sulfitobacter sp. EE-36]
gi|83846946|gb|EAP84821.1| helicase, putative [Sulfitobacter sp. EE-36]
Length = 975
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L +E G I ++ + +
Sbjct: 89 DLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMGSDTMRGSIAALVP----EAQFIR 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER+S L+ S ++ IV FS +Y + + I R K ++V G+L P T
Sbjct: 145 RERMSELIYSGQK--KISRMRPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLNL++ + FS + KFDG +R L E+ QIA
Sbjct: 202 RNAQVAMYQNG--EVDYLVATDAIGMGLNLDVDHVAFSALSKFDGRRMRPLAPNELAQIA 259
Query: 188 GRAGR---YGSKFPVGEVTCLD 206
GRAGR G+ G+ + LD
Sbjct: 260 GRAGRGFKSGTFGVTGDASPLD 281
>gi|89069367|ref|ZP_01156726.1| helicase, putative [Oceanicola granulosus HTCC2516]
gi|89045134|gb|EAR51205.1| helicase, putative [Oceanicola granulosus HTCC2516]
Length = 999
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 11/203 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D +DEIQ+ RG FT LL + L ++ + V+
Sbjct: 88 DFVAVDEIQLCADPERGHVFTDRLLHARGHHETLF---MGAETMRSAIAAMVPKVQFMKR 144
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER S L S + IV FS +Y + + + R K ++V G+L P TR
Sbjct: 145 ERFSQLTYSGSK--KISRMPGRSAIVGFSVENVYAIAELLR-RQKGGAAVVMGALSPRTR 201
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
Q + + + D LVA+DAIGMGLNL+I+ + FS + KFDG +R L E+ QIAG
Sbjct: 202 NAQVDMYQNG--DVDYLVATDAIGMGLNLDINHVAFSALSKFDGRRMRPLIPGELAQIAG 259
Query: 189 RAGR---YGSKFPVGEVTCLDSE 208
RAGR +G+ GE LD +
Sbjct: 260 RAGRHMNHGTFGVTGEAPELDED 282
>gi|83952974|ref|ZP_00961701.1| helicase, putative [Roseovarius nubinhibens ISM]
gi|83835636|gb|EAP74938.1| helicase, putative [Roseovarius nubinhibens ISM]
Length = 953
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 17/233 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL + E G +I +++ V +
Sbjct: 64 DFVAVDEIQLCADPERGHVFTDRLLHMRGQKETQFLGAATMRGVIAELVP----GVSFLT 119
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ERLS L + + IV FS +Y + + + R K ++V G+L P T
Sbjct: 120 RERLSQLAYTGPK--KLAKMPGRSAIVGFSVDNVYAIAELLR-RQKGGAAVVMGALSPRT 176
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL++ + FS++ KFDG +R L E+ QIA
Sbjct: 177 RNAQVELYQNG--DVDYLVATDAIGMGLNLDVDHVAFSSLTKFDGRRMRMLAPNELAQIA 234
Query: 188 GRAG---RYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
GRAG R+G+ GE + E + + P LE + N DL +
Sbjct: 235 GRAGRGMRHGTFGVTGEAPEMSDEVVEAITNHRFAPISRLE----WRNSDLRF 283
>gi|114764923|ref|ZP_01444096.1| helicase, putative [Pelagibaca bermudensis HTCC2601]
gi|114542635|gb|EAU45659.1| helicase, putative [Roseovarius sp. HTCC2601]
Length = 989
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL + L L D P+ + +
Sbjct: 89 DFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLGSDTMRGPINALV-----KGCEFI 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S L L S + IV FS +Y + + I R K ++V G+L P
Sbjct: 144 RRERMSQLGYLGSK--KISRMPARSAIVGFSVDNVYAIAELIR-RTKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + E D LVA+DAIGMGLNL+I + FS++ KFDG +R L E+ QI
Sbjct: 201 TRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLTKFDGRRMRPLQPNELAQI 258
Query: 187 AGRAGR 192
AGRAGR
Sbjct: 259 AGRAGR 264
>gi|407787113|ref|ZP_11134255.1| helicase-like protein [Celeribacter baekdonensis B30]
gi|407199939|gb|EKE69951.1| helicase-like protein [Celeribacter baekdonensis B30]
Length = 983
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL +E G + +I ++ +
Sbjct: 93 DFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFMGSDSMRSVIANLVP----KAQFMH 148
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+R S L S + IV FS +Y + + + R K ++V G+L P T
Sbjct: 149 RDRFSRLTYSGSK--KISRMPARAAIVGFSVDDVYAIAELLR-RQKGGAAVVMGALSPRT 205
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLNL+++ + FS+ KFDG +R L E+ QIA
Sbjct: 206 RNAQVEMYQNG--EVDYLVATDAIGMGLNLDVTHVAFSSTIKFDGRRMRHLAPNELAQIA 263
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGRY G+ GE D E
Sbjct: 264 GRAGRYQTDGTFGVTGEAEPFDEE 287
>gi|387213081|gb|AFJ69157.1| hypothetical protein NGATSA_2056000, partial [Nannochloropsis
gaditana CCMP526]
Length = 94
Score = 91.3 bits (225), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 25 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 84
G+++TR +LG+ A E+HLCG PA V ++Q++ + GDDV+V+ Y RLSPL P + S+
Sbjct: 1 GWAWTRVVLGLPAIEVHLCGTPAFVEIVQELAREIGDDVEVREYARLSPLKPQKKAVASW 60
Query: 85 SNIQTGDCIVTFSRHAIYRLKKAIE 109
+ I+ GDC+V FSR ++ LK IE
Sbjct: 61 AEIEAGDCVVAFSRKKLFELKNEIE 85
>gi|407798103|ref|ZP_11145016.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
gi|407059940|gb|EKE45863.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
Length = 1013
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
Query: 9 DCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT R L +E G I ++ +
Sbjct: 97 DFLAVDEIQLCADPERGHVFTDRLLRSRGTHETLFLGAETMRGAIAALVP----QAQFLR 152
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
ER S L + S ++ IV FS +Y + + I R K ++V G+L P T
Sbjct: 153 RERFSTL--MYTGSRKISRMRPRSAIVGFSVENVYAIAELIR-RQKGGAAVVMGALSPRT 209
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + +F LVA+DAIGMGLNL+I + FS KFDG +R L E+ QIA
Sbjct: 210 RNAQVDMYQNGDVDF--LVATDAIGMGLNLDIDHVAFSGTTKFDGRRMRPLMPNELAQIA 267
Query: 188 GRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GRAGRY G+ GE LD + + + + P +L+
Sbjct: 268 GRAGRYMQDGTFGVTGEAAPLDEDVVEAITEHRFAPLKVLQ 308
>gi|390448930|ref|ZP_10234544.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
gi|389665245|gb|EIM76719.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
Length = 1006
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
+D IDE+Q+ RG FT +L + E L ++ IL+ + V
Sbjct: 97 ADVAFVAIDEVQLAADLERGHIFTDRILHLRGREETLL---LGAGTMRGILEKLLPGLSV 153
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ R+S L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 154 ITRPRMSVLTYSGSR--KITRLPRRSAIVAFSSDEVYAIGELIR-RQRGGVAVVLGALSP 210
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDL E+ Q
Sbjct: 211 RTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFAQNRKFDGFQYRDLNPAELGQ 268
Query: 186 IAGRAGRY 193
IAGRAGR+
Sbjct: 269 IAGRAGRH 276
>gi|386399858|ref|ZP_10084636.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740484|gb|EIG60680.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 1148
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L V + + R
Sbjct: 103 AVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 159 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D LVA+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 216 QVAMFQNG--EVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFGQIAGRA 273
Query: 191 GRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
GR G+ G + E + L +P +L+
Sbjct: 274 GRATRNGTFGTTGRCAPFEPELVNALQNHTFDPVKVLQ 311
>gi|414165035|ref|ZP_11421282.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
gi|410882815|gb|EKS30655.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
Length = 1068
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT R L +E L G PLI+++L +
Sbjct: 78 DVSFLAVDEIQIASDLERGHVFTDRILHRRGRDETLLLGAATMRPLIERLLP----GANI 133
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 134 VTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 190
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 191 RTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQ 248
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 249 IAGRAGR 255
>gi|299132818|ref|ZP_07026013.1| helicase domain protein [Afipia sp. 1NLS2]
gi|298592955|gb|EFI53155.1| helicase domain protein [Afipia sp. 1NLS2]
Length = 1061
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G PLI+++L + + R
Sbjct: 83 AVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATMRPLIERLLP----GANIVTRPR 138
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 139 LSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 195
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E QIAGRA
Sbjct: 196 QVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRA 253
Query: 191 GR 192
GR
Sbjct: 254 GR 255
>gi|374572237|ref|ZP_09645333.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374420558|gb|EHR00091.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 1137
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L V + + R
Sbjct: 103 AVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 159 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + E D LVA+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 216 QVAMFQNG--EVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRA 273
Query: 191 GR 192
GR
Sbjct: 274 GR 275
>gi|407778467|ref|ZP_11125731.1| helicase-like protein [Nitratireductor pacificus pht-3B]
gi|407299838|gb|EKF18966.1| helicase-like protein [Nitratireductor pacificus pht-3B]
Length = 1028
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 64
+D IDE+Q+ RG FT +L + E L G +++++L +
Sbjct: 97 TDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETLLLGAGTMRGILERLLP----GLS 152
Query: 65 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
V + R+S L + + IV FS +Y + + I R + ++V G+L
Sbjct: 153 VITRPRMSVLTYAGSR--KITRLPRRSAIVAFSSDEVYAIGELIR-RQRGGVAVVLGALS 209
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDL E+
Sbjct: 210 PRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFAQNRKFDGFQYRDLNPAELG 267
Query: 185 QIAGRAGRY 193
QIAGRAGR+
Sbjct: 268 QIAGRAGRH 276
>gi|414175655|ref|ZP_11430059.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
gi|410889484|gb|EKS37287.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
Length = 1121
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+I+++L + + R
Sbjct: 105 AVDEIQIAADLERGHVFTDRVLNRRGRDETLLLGAATMRPIIERLLP----GANIVTRPR 160
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 161 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 217
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E QIAGRA
Sbjct: 218 QVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRA 275
Query: 191 GR 192
GR
Sbjct: 276 GR 277
>gi|27375270|ref|NP_766799.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
gi|27348406|dbj|BAC45424.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
Length = 1123
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L V + + R
Sbjct: 103 AVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 159 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + F + + D LVA+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 216 QVSMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRA 273
Query: 191 GR 192
GR
Sbjct: 274 GR 275
>gi|402772688|ref|YP_006592225.1| helicase domain-containing protein [Methylocystis sp. SC2]
gi|401774708|emb|CCJ07574.1| Helicase domain protein [Methylocystis sp. SC2]
Length = 1056
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGD 61
DV +D+ IDEIQ+ RG FT LL E L G PL+ ++
Sbjct: 101 DVQADF--VAIDEIQLAADLDRGHIFTDRLLHWRGRQETLLIGAATMAPLVTELFP---- 154
Query: 62 DVKVQSYERLSPLVPLNVPLGSF------SNIQTGDCIVTFSRHAIYRLKKAIESRGKHL 115
+ + RLS L SF S + IV FS +Y + + I+ R +
Sbjct: 155 GAPIFTRPRLSKL--------SFAGDKKISRLPPRSAIVAFSAEEVYAIAELIK-RQRGG 205
Query: 116 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 175
++V G L P TR Q + + D +VA+DAIGMGLNL++ + F++ +KFDG+
Sbjct: 206 AAVVLGVLSPRTRNAQIELYQ--GGDVDYIVATDAIGMGLNLDVDHVAFASDRKFDGLRH 263
Query: 176 RDLTVPEVKQIAGRAGRYGS 195
R LT E QIAGRAGR+ S
Sbjct: 264 RRLTPAEFGQIAGRAGRHMS 283
>gi|383768911|ref|YP_005447974.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
gi|381357032|dbj|BAL73862.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
Length = 1146
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L V +
Sbjct: 103 DVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSM 158
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I+ R ++V GSL P
Sbjct: 159 ITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSP 215
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 216 RTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQ 273
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 274 IAGRAGR 280
>gi|84500892|ref|ZP_00999127.1| helicase, putative [Oceanicola batsensis HTCC2597]
gi|84390959|gb|EAQ03377.1| helicase, putative [Oceanicola batsensis HTCC2597]
Length = 999
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDDVKVQ 66
D IDEIQ+ RG FT LL L L D + + + T
Sbjct: 89 DFLAIDEIQLCADPERGHVFTDRLLRARGQHETLFLGSDTMRGKIADLVPEAT-----FM 143
Query: 67 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 126
ER+S L S + IV FS +Y + + I R K ++V G+L P
Sbjct: 144 RRERMSHLSYAGSK--KISRMPPRSAIVGFSVDNVYAMAELIR-RQKGGAAVVMGALSPR 200
Query: 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 186
TR Q + + + D LVA+DAIGMGLNL+I+ + FS + KFDG +R L E+ QI
Sbjct: 201 TRNAQVALYQNG--DVDYLVATDAIGMGLNLDINHVAFSALSKFDGRRMRPLAPNELAQI 258
Query: 187 AGRAGRY---GSKFPVGEVTCLDSE 208
AGRAGR G+ GE L+ E
Sbjct: 259 AGRAGRGMADGTFGVTGEAAPLEDE 283
>gi|149202305|ref|ZP_01879278.1| helicase, putative [Roseovarius sp. TM1035]
gi|149144403|gb|EDM32434.1| helicase, putative [Roseovarius sp. TM1035]
Length = 970
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL + E G ++Q + V+ S
Sbjct: 89 DFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLGSHT----MRQTIAALVPGVEFLS 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R+S L P + + IV FS +Y + + + R K ++V G+L P T
Sbjct: 145 RARMSQLT-YTGPR-KIAKMPARSAIVGFSVENVYAMAELLR-RQKGGAAVVMGALSPRT 201
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+I+ + FS++ KFDG +R L E+ QIA
Sbjct: 202 RNAQVELYQN--GDVDYLVATDAIGMGLNLDINHVAFSSLSKFDGRRMRYLQPNELGQIA 259
Query: 188 GRAGR---YGSKFPVGEVTCLDSE 208
GRAGR G+ GE L+ E
Sbjct: 260 GRAGRGMNNGTFGVTGEAPDLEPE 283
>gi|384213900|ref|YP_005605063.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
gi|354952796|dbj|BAL05475.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
Length = 1126
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L V + + R
Sbjct: 103 AVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 159 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 216 QVAMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIAGRA 273
Query: 191 GR 192
GR
Sbjct: 274 GR 275
>gi|337739683|ref|YP_004631411.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM5]
gi|386028701|ref|YP_005949476.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM4]
gi|336093769|gb|AEI01595.1| helicase domain protein [Oligotropha carboxidovorans OM4]
gi|336097347|gb|AEI05170.1| helicase domain protein [Oligotropha carboxidovorans OM5]
Length = 1104
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G PLI+++L +
Sbjct: 100 DVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPLIERLLP----GANI 155
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 156 VTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 212
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DAIGMGLNL++ + F++ K+DG + R LT E Q
Sbjct: 213 RTRNAQVEMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDYKYDGYQFRRLTPAEFAQ 270
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
IAGRAGR G+ G + E + L L + ML+
Sbjct: 271 IAGRAGRATRNGTFGTTGRCAPFEPELVNALQNHLFDSVKMLQ 313
>gi|209883220|ref|YP_002287077.1| helicase [Oligotropha carboxidovorans OM5]
gi|209871416|gb|ACI91212.1| helicase [Oligotropha carboxidovorans OM5]
Length = 1082
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G PLI+++L +
Sbjct: 78 DVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPLIERLLP----GANI 133
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 134 VTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 190
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F S + D LVA+DAIGMGLNL++ + F++ K+DG + R LT E Q
Sbjct: 191 RTRNAQVEMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDYKYDGYQFRRLTPAEFAQ 248
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225
IAGRAGR G+ G + E + L L + ML+
Sbjct: 249 IAGRAGRATRNGTFGTTGRCAPFEPELVNALQNHLFDSVKMLQ 291
>gi|398824869|ref|ZP_10583186.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398224449|gb|EJN10754.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 1141
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L V + + R
Sbjct: 108 AVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPR 163
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 164 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 220
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DA+GMGLNL++ + F++ +KFDG + R LT E QIAGRA
Sbjct: 221 QVEMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRA 278
Query: 191 GR 192
GR
Sbjct: 279 GR 280
>gi|84515403|ref|ZP_01002765.1| helicase, putative [Loktanella vestfoldensis SKA53]
gi|84510686|gb|EAQ07141.1| helicase, putative [Loktanella vestfoldensis SKA53]
Length = 924
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQS 67
D +DEIQ+ RG FT LL A LH A + I V G V+
Sbjct: 88 DFLAVDEIQLCADPERGHIFTDRLL--HARGLHETLFLGAETMRGAIAALVPGAQFMVR- 144
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
+R+S L S + IV FS +Y + + + R K ++V G+L P T
Sbjct: 145 -DRMSELTYTGSK--KISRMPARSAIVGFSVDNVYAIAELLR-RTKGGAAVVMGALSPRT 200
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + + D LVA+DAIGMGLNL+IS + FS++ K+DG +R L E+ QIA
Sbjct: 201 RNAQVEMYQNG--DVDYLVATDAIGMGLNLDISHVAFSSLTKYDGRRMRHLEPQELAQIA 258
Query: 188 GRAGRY---GSKFPVGEVTCLD 206
GRAGR+ G+ GE LD
Sbjct: 259 GRAGRHIENGTFGVTGEAPPLD 280
>gi|323450513|gb|EGB06394.1| hypothetical protein AURANDRAFT_65725 [Aureococcus anophagefferens]
Length = 894
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE---LHLCGDPAAVPLIQQILQVTGDD 62
+D D V+DE+ RG ++TR L+ + + +CG A+PL++++ + D
Sbjct: 157 ADGDVLVLDEVHWCVDGWRGHAWTRLLMAAKSGRYRHVRVCGPVEALPLLERVFEANVAD 216
Query: 63 --VKVQSYERLSPLVPLN--VPLGSFSNIQTGD----CIVTFSRHAIYRLKKAIESRGKH 114
+V R S L L SF + + +V FSR ++ L A ++
Sbjct: 217 GTFEVDRTARRSRLTFEGDVGDLTSFLRARVAEKRFVAVVAFSRSSVLALAAAAQAA-GA 275
Query: 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 174
S+++G LPPE R Q D + DV+V +D IG G+NL + ++F+ +KFDG
Sbjct: 276 RASVIFGKLPPEARRSQLEAARDGT--LDVIVCTDVIGHGINLPLDDVVFAETRKFDGTS 333
Query: 175 LRDLTVPEVKQIAGRAGR 192
RDL V E Q+AGRAGR
Sbjct: 334 KRDLDVWEAAQVAGRAGR 351
>gi|374290661|ref|YP_005037696.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357422600|emb|CBS85436.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 828
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL E + G + P+I++++ + S
Sbjct: 83 DFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQPMIRRLVP----KAEFIS 138
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R S L + + +V FS +Y + + I R + ++V G+L P T
Sbjct: 139 RPRFSQLT--YAGYKKLTRLPPRSAVVAFSATDVYAIAEMIR-RQRGGTAVVLGALSPRT 195
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R L EV QIA
Sbjct: 196 RNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRPAEVAQIA 253
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGR+ G+ EV LD++
Sbjct: 254 GRAGRHMRDGTFGTTDEVGELDAD 277
>gi|90420291|ref|ZP_01228199.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
gi|90335625|gb|EAS49375.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
Length = 1089
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG FT R L E L G ++Q++L + + R
Sbjct: 103 AIDEVQLASDLERGHVFTDRILHARGREETLLLGSSTMQGVLQRLLSGS----HATTRPR 158
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS LV + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 159 LSNLVYAGSR--KITRLPRRTAIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 215
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D L+A+DAIGMGLNL++ + F+ KFDG + R LT E QIAGRA
Sbjct: 216 QVELYQ--SGDVDFLIATDAIGMGLNLDVDHVAFAQDWKFDGFQYRQLTPSEFGQIAGRA 273
Query: 191 GRY 193
GR+
Sbjct: 274 GRH 276
>gi|372279847|ref|ZP_09515883.1| helicase-like protein [Oceanicola sp. S124]
Length = 978
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT LL G+ + G + +I +L + +
Sbjct: 89 DFLAVDEIQLCADPERGHVFTDRLLRARGLV--DTIFLGSHSMRGVIADLLP----EAQF 142
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
ER+S L S + T +V FS IY + + I R K ++V G+L P
Sbjct: 143 IHRERMSQLTYAGGK--KVSRLPTRSAVVGFSVDNIYAMAELIR-RQKGGAAVVMGALSP 199
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + +F LVA+DAIGMGLNL++ + FS + KFDG +R+L E+ Q
Sbjct: 200 RTRNAQVELYQNGDVDF--LVATDAIGMGLNLDVRHVAFSGLSKFDGRRMRELFPHEMGQ 257
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP-------SPMLESAGLFP 231
IAGRAGR G+ GE L E + + P +P L AG+ P
Sbjct: 258 IAGRAGRGMSDGTFGVTGEAGSLPPELAEAIMEHRFAPVRKLQWRNPQLNFAGIDP 313
>gi|456358523|dbj|BAM92968.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 1161
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT +L +E L G P+I+++L + + R
Sbjct: 83 AVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPMIERLLP----GASMVTRPR 138
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 139 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 195
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DAIGMGLNL++ + F++ +K+DG + R LT E QIAGRA
Sbjct: 196 QVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQIAGRA 253
Query: 191 GR 192
GR
Sbjct: 254 GR 255
>gi|92116125|ref|YP_575854.1| helicase-like protein [Nitrobacter hamburgensis X14]
gi|91799019|gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14]
Length = 1140
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+I+++L + + R
Sbjct: 105 AVDEIQISADLERGHVFTDRILHRRGRDETLLLGAATMRPIIERLLP----GASIVTRPR 160
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 161 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 217
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E Q+AGRA
Sbjct: 218 QVAMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQVAGRA 275
Query: 191 GR 192
GR
Sbjct: 276 GR 277
>gi|85713778|ref|ZP_01044768.1| helicase [Nitrobacter sp. Nb-311A]
gi|85699682|gb|EAQ37549.1| helicase [Nitrobacter sp. Nb-311A]
Length = 1128
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDEIQ+ RG FT R L +E L G P+++++L + + R
Sbjct: 105 AIDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMRPIVERLLP----GASIVTRPR 160
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 161 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 217
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DA+GMGLNL++ + F++ +K+DG + R L E QIAGRA
Sbjct: 218 QVAMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLNPAEFAQIAGRA 275
Query: 191 GR 192
GR
Sbjct: 276 GR 277
>gi|146337762|ref|YP_001202810.1| ATP-dependent RNA and DNA helicase/translation initiation factor 2
[Bradyrhizobium sp. ORS 278]
gi|146190568|emb|CAL74570.1| Conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and translation initiation factor
2 (IF-2; GTPase) (C-terminal) [Bradyrhizobium sp. ORS
278]
Length = 1170
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L +
Sbjct: 108 DVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GASM 163
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 164 VTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 220
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + + D LVA+DAIGMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 221 RTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQ 278
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 279 IAGRAGR 285
>gi|365893045|ref|ZP_09431251.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365330803|emb|CCE03782.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 1142
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L +
Sbjct: 78 DVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GASM 133
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 134 VTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 190
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + + D LVA+DAIGMGLNL++ + F++ +K+DG + R LT E Q
Sbjct: 191 RTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQ 248
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 249 IAGRAGR 255
>gi|288959505|ref|YP_003449846.1| helicase C-terminal domain-containing protein [Azospirillum sp.
B510]
gi|288911813|dbj|BAI73302.1| helicase C-terminal domain protein [Azospirillum sp. B510]
Length = 846
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQS 67
D +DEIQ+ RG FT LL E + G + P+I++++ + S
Sbjct: 100 DFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQPMIRRLVP----KAEFVS 155
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 127
R S L + + +V FS +Y + + I R + ++V G+L P T
Sbjct: 156 RPRFSQLT--YAGHRKLTRLPPRSAVVAFSATDVYAIAELIR-RQRGGTAVVLGALSPRT 212
Query: 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIA 187
R Q + + E D LVA+DAIGMGLN+++ + F+ + KFDG R L EV QIA
Sbjct: 213 RNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRPAEVAQIA 270
Query: 188 GRAGRY---GSKFPVGEVTCLDSE 208
GRAGR+ G+ EV LD++
Sbjct: 271 GRAGRHMRDGTFGTTDEVGELDAD 294
>gi|365893471|ref|ZP_09431646.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365425773|emb|CCE04188.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 1192
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT +L +E L G P+I+++L + + R
Sbjct: 109 AVDEVQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GASLVTRPR 164
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 165 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 221
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DAIGMGLNL++ + F++ +K+DG + R LT E QIAGRA
Sbjct: 222 QVAMFQN--GDVDYLVATDAIGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRA 279
Query: 191 GR 192
GR
Sbjct: 280 GR 281
>gi|115522157|ref|YP_779068.1| helicase domain-containing protein [Rhodopseudomonas palustris
BisA53]
gi|115516104|gb|ABJ04088.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
Length = 1116
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 22/188 (11%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+++++L + + R
Sbjct: 105 AVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATMRPIVERLLP----GASIVTRPR 160
Query: 71 LSPLVPLNVPLGSFSNIQT------GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124
+S L FS + IV FS +Y + + I R ++V GSL
Sbjct: 161 MSQL--------EFSGDRKITRQPRRTAIVAFSADEVYAIAELIR-RQHGGAAVVLGSLS 211
Query: 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 184
P TR Q + S + D LVA+DA+GMGLNL++ + F++ +KFDG + R L E
Sbjct: 212 PRTRNAQVAMYQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLNPSEFA 269
Query: 185 QIAGRAGR 192
QIAGRAGR
Sbjct: 270 QIAGRAGR 277
>gi|367476476|ref|ZP_09475856.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365271231|emb|CCD88324.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 1160
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT +L +E L G P+I+++L + + R
Sbjct: 113 AVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GASMVTRPR 168
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 169 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 225
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F + + D LVA+DA+GMGLNL++ + F++ +K+DG + R LT E QIAGRA
Sbjct: 226 QVAMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQIAGRA 283
Query: 191 GR 192
GR
Sbjct: 284 GR 285
>gi|182677076|ref|YP_001831222.1| helicase domain-containing protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182632959|gb|ACB93733.1| helicase domain protein [Beijerinckia indica subsp. indica ATCC
9039]
Length = 1142
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 106/235 (45%), Gaps = 17/235 (7%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D IDEIQ+ RG FT LL +E L G +Q+ L
Sbjct: 99 DLSFVAIDEIQLASDLDRGHVFTDRLLNRRGRDETLLIG----AATMQRALAELLPGAHF 154
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 155 LARPRLSKLSFAGEK--KMARLPRRSAIVAFSAEEVYAIAEWIR-RQRGGAAVVLGALSP 211
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q + + E D +VA+DAIGMGLNL++ I F+ +KFDG R LT E Q
Sbjct: 212 RTRNAQVEMYQNG--EVDYIVATDAIGMGLNLDVDHIAFAADRKFDGWHYRRLTPAEFGQ 269
Query: 186 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
IAGRAGR+ G+ G D + + L + + ML+ + N DL +
Sbjct: 270 IAGRAGRHLRDGTFGTTGRCAPFDEDLIEALEEHRFDSVNMLQ----WRNTDLDF 320
>gi|90422069|ref|YP_530439.1| helicase-like protein [Rhodopseudomonas palustris BisB18]
gi|90104083|gb|ABD86120.1| helicase-like [Rhodopseudomonas palustris BisB18]
Length = 1169
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DEIQ+ RG FT R L +E L G P+I+++L + + R
Sbjct: 105 AVDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMRPIIERLLP----GASIVTRPR 160
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I R ++V GSL P TR
Sbjct: 161 LSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSPRTRNA 217
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + S + D LVA+DA+GMGLNL++ + F++ +K+DG + R L E QIAGRA
Sbjct: 218 QVAMYQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLNPSEFAQIAGRA 275
Query: 191 GR 192
GR
Sbjct: 276 GR 277
>gi|148258716|ref|YP_001243301.1| ATP-dependent RNA and DNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410889|gb|ABQ39395.1| putative ATP-dependent RNA and DNA helicase [Bradyrhizobium sp.
BTAi1]
Length = 1177
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DEIQ+ RG FT +L +E L G P+I+++L +
Sbjct: 104 DVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GASM 159
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 160 VTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 216
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 185
TR Q F + + D LVA+DAIGMGLNL++ + F++ +K+DG + R L E Q
Sbjct: 217 RTRNAQVEMFQN--GDVDYLVATDAIGMGLNLDVDHVAFASDRKYDGYQFRRLNPSEFAQ 274
Query: 186 IAGRAGR 192
IAGRAGR
Sbjct: 275 IAGRAGR 281
>gi|91974763|ref|YP_567422.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
gi|91681219|gb|ABE37521.1| helicase-like [Rhodopseudomonas palustris BisB5]
Length = 1119
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT LL E L G P+I+++L + + R
Sbjct: 104 AVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMRPIIERLLP----GASIVTRPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 160 LSQLEFAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DAIGMGLNL++ + F++ +KFDG + R L E QIAGRA
Sbjct: 217 QVAMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLNPSEFAQIAGRA 274
Query: 191 GR 192
GR
Sbjct: 275 GR 276
>gi|86747674|ref|YP_484170.1| helicase [Rhodopseudomonas palustris HaA2]
gi|86570702|gb|ABD05259.1| helicase [Rhodopseudomonas palustris HaA2]
Length = 1145
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+DE+Q+ RG FT LL E L G P+I+++L + + R
Sbjct: 109 AVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMRPIIERLLP----GASIVTRPR 164
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + +T IV FS +Y + + I+ R ++V GSL P TR
Sbjct: 165 LSQLEFAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNA 221
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q F S + D LVA+DAIGMGLNL++ + F++ +KFDG + R L E QIAGRA
Sbjct: 222 QVAMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLNPSEFAQIAGRA 279
Query: 191 GR 192
GR
Sbjct: 280 GR 281
>gi|209965703|ref|YP_002298618.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
gi|209959169|gb|ACI99805.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
Length = 1144
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 24/190 (12%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAA------VPLIQQILQVTGDDV 63
+DEIQ+ RG FT LL +E + L D VP + I + ++
Sbjct: 103 AVDEIQLCADPERGHIFTDRLLHARGSEETMFLGADTVRGLIQKLVPRAEYISRPRFSNL 162
Query: 64 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 123
+++L+ L P + IV FS +Y + + + R + ++V G+L
Sbjct: 163 SHAGHKKLTRLPPRS-------------AIVAFSVTDVYAMAEMVR-RSRGGTAVVMGAL 208
Query: 124 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 183
P TR Q + + + D LVA+DA+GMGLN+++ + F+ + KFDG + R L EV
Sbjct: 209 SPRTRNAQVAMYQ--AGDVDYLVATDAVGMGLNMDVDSVWFARLSKFDGHQPRRLKATEV 266
Query: 184 KQIAGRAGRY 193
QIAGRAGR+
Sbjct: 267 AQIAGRAGRH 276
>gi|218459591|ref|ZP_03499682.1| putative ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
Length = 279
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 92 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151
IV FS +Y + + I R + ++V G+L P TR Q + E+ LVA+DAI
Sbjct: 5 AIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAI 61
Query: 152 GMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 208
GMGLNL++ + F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 62 GMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 121
>gi|114706529|ref|ZP_01439430.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
gi|114537921|gb|EAU41044.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
Length = 1124
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
IDE+Q+ RG FT +L E L G ++ ++L ++ + R
Sbjct: 104 AIDEVQLASDLERGHVFTDRILNCRGYEETLLLGASTMAGVLNRLLP----GMQTATRPR 159
Query: 71 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 130
LS L + + + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 160 LSNL--MYAGQKKITRLPRRSAIVAFSAAEVYAIAELIR-RQRGGAAVVLGALSPRTRNA 216
Query: 131 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
Q + + E D LVA+DAIGMGLNL++ + F+ K+DG + R LT E QIAGRA
Sbjct: 217 QVELYQ--TGEVDFLVATDAIGMGLNLDVDHVAFAQDWKYDGFQYRQLTPAEFGQIAGRA 274
Query: 191 GRY 193
GR+
Sbjct: 275 GRH 277
>gi|385303196|gb|EIF47286.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 127
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 58/75 (77%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + YD V+DEIQM+G + RG ++T A+LG+ A E+HLCG+ +AVP+I++++ +TG
Sbjct: 51 MLSMSESYDVVVVDEIQMIGDQYRGSAWTNAVLGVRAKEIHLCGEISAVPIIKRLVAMTG 110
Query: 61 DDVKVQSYERLSPLV 75
DD+++++Y+RL LV
Sbjct: 111 DDLEIKTYKRLGKLV 125
>gi|430811994|emb|CCJ30590.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 246
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
D VIDE+QM+ RG+++T+ LLG+ A+E+HLCG+ ++V LI +I + G+ VK+ Y
Sbjct: 163 DIIVIDEVQMIADPHRGWAWTQVLLGVQASEIHLCGEESSVELILKIAKSMGEKVKIYHY 222
Query: 69 ERLSPLVPLNVPL-GSFSNIQTGD 91
+RL+PL PL L G + +++GD
Sbjct: 223 KRLNPLEPLKQSLYGDLTKVESGD 246
>gi|126461854|ref|YP_001042968.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103518|gb|ABN76196.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
Length = 786
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 116 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 175
C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +
Sbjct: 14 CAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRM 71
Query: 176 RDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 206
R L E+ QIAGRAGR+ G+ GE + LD
Sbjct: 72 RPLFPHELGQIAGRAGRHTEAGTFGVTGEASPLD 105
>gi|255597590|ref|XP_002536808.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223518473|gb|EEF25574.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 404
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M D + D AVIDEIQML + RG ++T A+ G A ++L G P A I+ +
Sbjct: 263 MLDTQTPVDVAVIDEIQMLSDRDRGAAWTAAVCGAPARVVYLVGAPEARRAIEVLAARLE 322
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+++V +R PL + SN++ GD ++ FSR + + + G + + VY
Sbjct: 323 CELEVHLLKRKGPLTMEPSAVRKLSNLRRGDAVICFSRREVLMWRDMVTEMGLSVAT-VY 381
Query: 121 GSLPPETRTRQATRFNDASSE 141
G+L PE R QA RF + S++
Sbjct: 382 GNLSPEVRRAQAQRFREGSAD 402
>gi|414870662|tpg|DAA49219.1| TPA: hypothetical protein ZEAMMB73_828601 [Zea mays]
Length = 467
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 63
+V D + ++M+GCK+RG+ FTRA LG+C++ELH+CGDPA VPLIQ+IL+ TGD V
Sbjct: 63 LVGAVDSRPVGWVKMVGCKSRGYLFTRAHLGLCSDELHVCGDPAVVPLIQRILEDTGDVV 122
>gi|302798689|ref|XP_002981104.1| hypothetical protein SELMODRAFT_420764 [Selaginella moellendorffii]
gi|300151158|gb|EFJ17805.1| hypothetical protein SELMODRAFT_420764 [Selaginella moellendorffii]
Length = 484
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 308 GLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFP 367
L +FA NY+ V L+ + TP T++VP TQ L ELES+HKVLD+Y+WLS+RLE++F
Sbjct: 3 ALLKFARNYAVNRNVPLKRLLTPATMRVPSTQKDLAELESLHKVLDMYIWLSYRLEDAFA 62
Query: 368 DRE 370
DR+
Sbjct: 63 DRD 65
>gi|299470377|emb|CBN78426.1| ATP-dependent RNA helicase, mitochondrial, putative [Ectocarpus
siliculosus]
Length = 745
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
MA V++Y+ AVIDEIQML + RG S+T A+LG+ E+H+CG L++ + + TG
Sbjct: 653 MASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAKETG 712
Query: 61 DDVKVQSYERLSPLVPLNVPLG-SFSNIQTGD 91
DD +++ Y+R + LV LG ++ NIQ G+
Sbjct: 713 DDFELREYQRKTELVCAEESLGNNYKNIQPGE 744
>gi|361067447|gb|AEW08035.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148462|gb|AFG56032.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148463|gb|AFG56033.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148464|gb|AFG56034.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148465|gb|AFG56035.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148466|gb|AFG56036.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148467|gb|AFG56037.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148468|gb|AFG56038.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148469|gb|AFG56039.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148470|gb|AFG56040.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148471|gb|AFG56041.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148472|gb|AFG56042.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148473|gb|AFG56043.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148474|gb|AFG56044.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148475|gb|AFG56045.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148476|gb|AFG56046.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148477|gb|AFG56047.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
Length = 140
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 233 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKY 291
F+ + +++ PD + +LE F E+ L +F + V +VA ++D++P L L ++Y
Sbjct: 2 FEQVELFAGQLPDITFSQLLEKFAESCVLDGAFFLCRHDHVKRVAHMLDRVPGLSLEDRY 61
Query: 292 LFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAA----LRELES 347
FC SPV+ D + L +FA YSK V++ + VPK A L LE+
Sbjct: 62 NFCFSPVNTRDPQAMSSLLRFALQYSKNLPVRI-------AMGVPKESAKNDEDLLNLET 114
Query: 348 IHKVLDLYVWLSFRLEE-SFPDRELA 372
H+VL +Y+WLS E +FP +E A
Sbjct: 115 KHQVLSMYMWLSQHFSEGTFPYKETA 140
>gi|413918552|gb|AFW58484.1| hypothetical protein ZEAMMB73_992465 [Zea mays]
Length = 250
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 145 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204
L A+DA+GM LN NI R++F T+ K+DG ++ ++VP + C
Sbjct: 114 LRATDAVGMRLNFNIRRVVFYTLMKYDGEKM--VSVPASQ-------------------C 152
Query: 205 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN 264
LD EP E GLFP F+ + M++ P+ + +L+ F + ++ +
Sbjct: 153 LD------------EPVKEAEKVGLFPTFEQLEMFATHFPELAFNNLLDKFRDTCRIDDT 200
Query: 265 YFFANCEEVLKVATVIDQLP-LRLHEKYLF 293
YF + + KVA++I+ + L L + Y+F
Sbjct: 201 YFMCQHDSMKKVASMIESVQGLSLKDHYIF 230
>gi|170094380|ref|XP_001878411.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646865|gb|EDR11110.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 56
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 18 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP 73
M+ RG +T A+LGI A ELHLCG+ AVP++Q +L+ TGD+V ++ YERL+P
Sbjct: 1 MIADPQRGSGWTSAVLGIIAEELHLCGEETAVPVVQALLKDTGDEVVIRRYERLTP 56
>gi|297737086|emb|CBI26287.3| unnamed protein product [Vitis vinifera]
Length = 85
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 359 SFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPR 403
SF+LE+ FPDRELA SQ+AICSMLIE FLER GW++P + R
Sbjct: 28 SFQLEDLFPDRELALSQRAICSMLIEGFLERGGWRQPMASSMPSR 72
>gi|156720252|dbj|BAF76776.1| putative ATP-dependent mitochondrial RNA helicase [Glandirana
rugosa]
Length = 212
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 283 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQA 340
+PL L +Y+FC +P++ N L +FA +S+ + + I + PK+
Sbjct: 1 IPLNLRARYVFCTAPINRNLPFVCTSLLKFARQFSRNEPLTFQWICKHLHWPVSSPKSIK 60
Query: 341 ALRELESIHKVLDLYVWLSFRLEESFPDRELAAS 374
L LE++H +LDLY+WLS+R + FP L S
Sbjct: 61 DLMHLEAVHDILDLYLWLSYRFMDMFPHAGLVRS 94
>gi|227495284|ref|ZP_03925600.1| helicase [Actinomyces coleocanis DSM 15436]
gi|226831154|gb|EEH63537.1| helicase [Actinomyces coleocanis DSM 15436]
Length = 881
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 51/233 (21%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQ-ILQVTGDDVK 64
D D +IDE G + RG+++ LL + + + L AV Q+ +L+ TG +V
Sbjct: 145 DADMIIIDEFHFYGDRERGWAWQVPLLELTKPQFVLLSATLGAVDFFQEDLLRRTGREVA 204
Query: 65 -VQSYERLSPL------VPLN----------------VPLGSFSNIQTGDCIVTFS---- 97
V + +R PL PL V G + ++T + + T +
Sbjct: 205 LVSAAQRPVPLEMSYSVFPLADSVAELIESGKYPIYIVHFGQKAALETANNLATPTLVSK 264
Query: 98 RH--------AIYRLKKAIESRGKHLCSIVY--------GSLPPETRTRQATRFNDASSE 141
RH A +R K G+ L +++ G LP R R
Sbjct: 265 RHQEKIKEATAGFRFGKGF---GQTLRKLLHQGVGIHHAGMLP---RYRLLVEHLTQQGL 318
Query: 142 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I+ ++ +++ KFDGV R L+ E QIAGRAGR G
Sbjct: 319 LAVICGTDTLGVGINVPITTVLITSLVKFDGVRQRTLSAREFHQIAGRAGRAG 371
>gi|410075151|ref|XP_003955158.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
gi|372461740|emb|CCF56023.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
Length = 1276
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F ++I RLKK ++S + ++ +G L P +
Sbjct: 638 NFCNNKERSQIHMFIENSITRLKKEDRELPQVLKVKSLLERGIAVHHGGLLPIVKELIEI 697
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL ++FS ++K DG +RDLT E Q+AGRAGR
Sbjct: 698 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIRKHDGNGVRDLTPGEFTQMAGRAGRR 755
Query: 194 GSKFPVGEVTCLDSEDLPLL 213
G + +E LPLL
Sbjct: 756 GLDKTGTVIVMAYNEPLPLL 775
>gi|356569566|ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL +++ MG+N ++F T++KFDG E R L E Q+AGRAGR G +G V
Sbjct: 733 VLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLD-KIGTVI 791
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 238
+ ++LP +S LEP + + L F L Y+
Sbjct: 792 LMCRDELP--EESDLEPVIVGSATRLESQFRLTYI 824
>gi|403214546|emb|CCK69047.1| hypothetical protein KNAG_0B06170 [Kazachstania naganishii CBS
8797]
Length = 1283
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RL+K I S + ++ +G L P +
Sbjct: 645 NFCNNKEKSQIYMFIEKSITRLRKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEI 704
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F A VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 705 LF--AKGFIKVLFATETFAMGLNLPTRTVVFSEIRKHDGNGLRDLTPGEFTQMAGRAGRR 762
Query: 194 G 194
G
Sbjct: 763 G 763
>gi|383456753|ref|YP_005370742.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380733025|gb|AFE09027.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
Length = 853
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 61/244 (25%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC----GDPAAVPLIQQIL 56
+ D + D V+DE K RG ++ LL + + L GD + Q +
Sbjct: 142 LRDASARVDAVVMDEFHYYSDKERGVAWQIPLLALPKTQFLLMSATLGDTHVIE--QSLE 199
Query: 57 QVTGDDVK-VQSYERLSPL------VPLNVPLGSFSNIQTGDCIVTFSRHAIYRL---KK 106
++TG +V V+S ER PL VPL+ +T ++ ++ +Y + ++
Sbjct: 200 KLTGREVATVRSSERPVPLDFDYREVPLH---------ETIQDLIARGKYPVYLVNFTQR 250
Query: 107 AIESRGKHLCSIVYGSLPPETRTRQA-------TRFNDASSEF----------------- 142
A + ++L S+ + + + RQA T + F
Sbjct: 251 AAAEQAQNLMSVDFNTKEEKEEIRQALLDAPFDTPYGKDFQRFLRHGIGMHHAGLLPKYR 310
Query: 143 ------------DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190
V+ +D +G+G+N+ I ++F+ + KF+G +L L+V + KQIAGRA
Sbjct: 311 LLVEKLAQQGLLKVISGTDTLGVGVNIPIRTVLFTQLFKFNGEKLATLSVRDFKQIAGRA 370
Query: 191 GRYG 194
GR G
Sbjct: 371 GRKG 374
>gi|363750700|ref|XP_003645567.1| hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889201|gb|AET38750.1| Hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1274
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQATR 134
FS + + F +I RLKK I S + +I +G L P +
Sbjct: 638 FSTAKEKSQVYMFIEKSISRLKKEDRDLPQIMKIRSLLERGIAIHHGGLLPIVKELIEML 697
Query: 135 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
F A VL A++ MGLNL ++FS ++K DG LR L E Q+AGRAGR G
Sbjct: 698 F--AKGFVKVLFATETFAMGLNLPTRTVVFSEIEKHDGNSLRTLNPGEFTQMAGRAGRRG 755
Query: 195 SKFPVGEVTCL 205
K P+G V +
Sbjct: 756 -KDPIGTVIIM 765
>gi|156084552|ref|XP_001609759.1| helicase with zinc finger motif protein [Babesia bovis T2Bo]
gi|154797011|gb|EDO06191.1| helicase with zinc finger motif protein, putative [Babesia bovis]
Length = 1113
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 202
VL A++ MG+N+ +IF+++ K DG + R LT E Q+AGRAGR G F +
Sbjct: 544 VLFATETFAMGVNMPARSVIFTSIHKHDGQKTRHLTASEYTQMAGRAGRRGLDSFGSVYI 603
Query: 203 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
C D DL L + E S LES L+ ++SR H + + +L+ F E K+
Sbjct: 604 FCPDDPPDLQDLTTMMFEKSTKLESKFRITYNMLLQVHSREHMNITEM-MLKSFKETYKM 662
>gi|365991078|ref|XP_003672368.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
gi|343771143|emb|CCD27125.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
Length = 1310
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + + F ++I RLKK I + + ++ +G L P +
Sbjct: 672 NFCNAKEKSQVHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEI 731
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 732 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIRKHDGTGLRDLTPGEFTQMAGRAGRR 789
Query: 194 G 194
G
Sbjct: 790 G 790
>gi|156847381|ref|XP_001646575.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
gi|156117253|gb|EDO18717.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
Length = 1274
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK I S + ++ +G L P +
Sbjct: 636 NFCNNREKSQIHMFIEKSITRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEI 695
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F + VL A++ MGLNL +IFS ++K DGV LRDL E Q+AGRAGR
Sbjct: 696 LF--SKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGVGLRDLNPGEFTQMAGRAGRR 753
Query: 194 G 194
G
Sbjct: 754 G 754
>gi|366997422|ref|XP_003678473.1| hypothetical protein NCAS_0J01560 [Naumovozyma castellii CBS 4309]
gi|342304345|emb|CCC72135.1| hypothetical protein NCAS_0J01560 [Naumovozyma castellii CBS 4309]
Length = 1298
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F ++I RLKK I + + ++ +G L P +
Sbjct: 660 NFCNAKEKSQIHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEI 719
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 720 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIQKHDGSGLRDLTPGEFTQMAGRAGRR 777
Query: 194 G 194
G
Sbjct: 778 G 778
>gi|401624563|gb|EJS42619.1| ski2p [Saccharomyces arboricola H-6]
Length = 1285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK I S + ++ +G L P +
Sbjct: 649 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKIRSLLERGIAVHHGGLLPIVKELIEI 708
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 709 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 766
Query: 194 G 194
G
Sbjct: 767 G 767
>gi|387593908|gb|EIJ88932.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm3]
gi|387595891|gb|EIJ93514.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm1]
Length = 976
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ +GLN+ +IF+++KKFDGV+ R +T E Q++GRAGR G+ +G V
Sbjct: 421 VLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFITSGEYIQMSGRAGRRGTD-KIGNVI 479
Query: 204 CLDSEDLPL----LHKSLLEPSPMLESA 227
L L + K L PS L+SA
Sbjct: 480 LALESTLTLSEKEIKKVLHGPSNTLDSA 507
>gi|332671188|ref|YP_004454196.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332340226|gb|AEE46809.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 853
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++ +++ K+DGV +R L+ E QIAGRAGR G VGEV
Sbjct: 320 VVCGTDTLGVGINVPIRTVLLTSLVKYDGVRMRHLSAREFHQIAGRAGRAGFDT-VGEVI 378
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
L E ++E LE AG P
Sbjct: 379 VLAPE-------HVIENRRALEKAGDDPR 400
>gi|392570858|gb|EIW64030.1| antiviral helicase [Trametes versicolor FP-101664 SS1]
Length = 1254
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++FS ++K DG RD+ E Q+AGRAGR G P G V
Sbjct: 674 VLFATETFAMGVNMPAKCVVFSHIRKHDGRSFRDIMPGEYTQMAGRAGRRGLD-PTGTVI 732
Query: 204 CLDSEDLP---LLHKSLL 218
+ ++DLP +LH +L
Sbjct: 733 IVANDDLPEQSILHNMIL 750
>gi|66359948|ref|XP_627152.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
gi|46228571|gb|EAK89441.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
Length = 1280
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL +++ MG+N+ +IF++++KFDG E R + E Q++GRAGR G +T
Sbjct: 442 VLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSGRAGRRGLDDRGITIT 501
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 263
+D P KS+L P+ + + ++++ RL Y I F + K +
Sbjct: 502 MIDELADPWAIKSMLTGQPLRIDSQFYIGYNMLLNLLRLEGADPEYMINRSFSQFLKRKK 561
Query: 264 NYFFANCEEVLKVATVIDQ 282
EE+ ++ +++D
Sbjct: 562 TVSLH--EEINRIQSILDN 578
>gi|67623323|ref|XP_667944.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis TU502]
gi|54659130|gb|EAL37723.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis]
Length = 1280
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL +++ MG+N+ +IF++++KFDG E R + E Q++GRAGR G +T
Sbjct: 442 VLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSGRAGRRGLDDRGITIT 501
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 263
+D P KS+L P+ + + ++++ RL Y I F + K +
Sbjct: 502 MIDELADPWAIKSMLTGQPLRIDSQFYIGYNMLLNLLRLEGADPEYMINRSFSQFLKRKK 561
Query: 264 NYFFANCEEVLKVATVIDQ 282
EE+ ++ +++D
Sbjct: 562 TVSLH--EEINRIQSILDN 578
>gi|378756169|gb|EHY66194.1| ATP-dependent DEAD/H RNA helicase [Nematocida sp. 1 ERTm2]
Length = 970
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ +GLN+ +IF+++KKFDGV+ R +T E Q++GRAGR G+ +G V
Sbjct: 419 VLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFITSGEYIQMSGRAGRRGTD-RIGNVI 477
Query: 204 CLDSEDLPLLHKSLLE----PSPMLESA 227
+ L K + + PS L+SA
Sbjct: 478 LALESTMTLTEKEIRKVLHGPSNTLDSA 505
>gi|296270080|ref|YP_003652712.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296092867|gb|ADG88819.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 832
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 103 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 162
R + + +H + + + P+ R R R A V+ +D +G+G+N+ I +
Sbjct: 278 RFGRTLSRLVRHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNIPIRTV 335
Query: 163 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204
+F+ + KFDG +R L E QIAGRAGR G VG V C
Sbjct: 336 LFTALSKFDGSRVRRLRAREFHQIAGRAGRAGFD-TVGYVVC 376
>gi|271967476|ref|YP_003341672.1| ATP-dependent helicase [Streptosporangium roseum DSM 43021]
gi|270510651|gb|ACZ88929.1| putative ATP-dependent helicase [Streptosporangium roseum DSM
43021]
Length = 830
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 103 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 162
R +A+ +H + + + P+ R R R A V+ +D +G+G+N+ I +
Sbjct: 276 RFGRALSRLVRHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNVPIRTV 333
Query: 163 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204
+F+ + K+DG ++R L E QIAGRAGR G +G V C
Sbjct: 334 LFTALSKYDGNKVRRLRAREFHQIAGRAGRAGFD-TIGYVVC 374
>gi|308233582|ref|ZP_07664319.1| DEAD box-like helicase [Atopobium vaginae DSM 15829]
gi|328944492|ref|ZP_08241953.1| DEAD box family helicase [Atopobium vaginae DSM 15829]
gi|327490893|gb|EGF22671.1| DEAD box family helicase [Atopobium vaginae DSM 15829]
Length = 947
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I +IF+++ KFDG +R L E QIAGRAGR G
Sbjct: 356 VICGTDTLGVGINVPIHTVIFNSLTKFDGRHMRHLNAREFHQIAGRAGRCG 406
>gi|323303729|gb|EGA57515.1| Ski2p [Saccharomyces cerevisiae FostersB]
Length = 1287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|190405440|gb|EDV08707.1| antiviral helicase SKI2 [Saccharomyces cerevisiae RM11-1a]
gi|323353725|gb|EGA85581.1| Ski2p [Saccharomyces cerevisiae VL3]
Length = 1287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|151940919|gb|EDN59301.1| superkiller [Saccharomyces cerevisiae YJM789]
Length = 1287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|259148376|emb|CAY81623.1| Ski2p [Saccharomyces cerevisiae EC1118]
gi|365764188|gb|EHN05713.1| Ski2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|256269132|gb|EEU04467.1| Ski2p [Saccharomyces cerevisiae JAY291]
Length = 1287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|255727753|ref|XP_002548802.1| antiviral helicase SKI2 [Candida tropicalis MYA-3404]
gi|240133118|gb|EER32674.1| antiviral helicase SKI2 [Candida tropicalis MYA-3404]
Length = 1247
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKKA------------IESRGKHLCSIVYGSLPPETRTRQ 131
F+N + I F A+ RLKK + SRG ++ +G L P +
Sbjct: 606 FNNAKEKSEIHMFIDRAVGRLKKEDRELPQILKIRDMLSRG---IAVHHGGLLPIVKECI 662
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
F A S VL A++ MGLNL ++FS+M+K DG R+L E Q++GRAG
Sbjct: 663 EILF--AKSLVKVLFATETFAMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMSGRAG 720
Query: 192 RYG 194
R G
Sbjct: 721 RRG 723
>gi|86740957|ref|YP_481357.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86567819|gb|ABD11628.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 885
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ K+DG +R L+ E QIAGRAGR G PVG V
Sbjct: 351 VICGTDTLGVGINVPIRTVVFTSLSKYDGSRVRLLSAREFHQIAGRAGRAGYD-PVGNVV 409
Query: 204 C 204
Sbjct: 410 V 410
>gi|429961689|gb|ELA41234.1| hypothetical protein VICG_01723 [Vittaforma corneae ATCC 50505]
Length = 900
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ +GLN+ +IF++++KFDG R LT E Q++GRAGR G +G
Sbjct: 383 VLFATETFSIGLNMPAKTVIFTSLRKFDGTNRRLLTSGEFIQMSGRAGRRGLD-EMGAAI 441
Query: 204 CLDSEDLPLLH-KSLLEPSPMLESAGLFPNFDLIY 237
C+ +E+L + K++ S + LF F L Y
Sbjct: 442 CILTEELTVAQVKTIFSSS----ADKLFSAFRLTY 472
>gi|364506256|pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 420 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477
Query: 194 G 194
G
Sbjct: 478 G 478
>gi|398366119|ref|NP_013502.3| Ski2p [Saccharomyces cerevisiae S288c]
gi|8489004|sp|P35207.2|SKI2_YEAST RecName: Full=Antiviral helicase SKI2; AltName: Full=Superkiller
protein 2
gi|625114|gb|AAB82356.1| Ski2p: Antiviral protein [Saccharomyces cerevisiae]
gi|285813803|tpg|DAA09699.1| TPA: Ski2p [Saccharomyces cerevisiae S288c]
gi|392297900|gb|EIW08999.1| Ski2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1287
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|367014127|ref|XP_003681563.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
gi|359749224|emb|CCE92352.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
Length = 1257
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 133
+F N + I F ++ RLKK I S + ++ +G L P +
Sbjct: 619 NFCNGKEKSQIFMFIEKSVTRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEM 678
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F A VL A++ MGLNL +IFS ++K DG LR+L E Q+AGRAGR
Sbjct: 679 LF--AKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGTGLRNLAPGEFTQMAGRAGRR 736
Query: 194 G 194
G
Sbjct: 737 G 737
>gi|336321468|ref|YP_004601436.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336105049|gb|AEI12868.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 852
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++ +++ K+DG +R L+ E QIAGRAGR G VGEV
Sbjct: 316 VVCGTDTLGVGINVPIRTVVLTSLVKYDGTRMRHLSAREFHQIAGRAGRAGFDT-VGEVV 374
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPN 232
+ E ++E LE AG P
Sbjct: 375 VMAPE-------HVIENRKALERAGDDPR 396
>gi|50285719|ref|XP_445288.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524592|emb|CAG58194.1| unnamed protein product [Candida glabrata]
Length = 1283
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR G
Sbjct: 712 VLFATETFAMGLNLPTRTVVFSEIQKHDGNGLRDLTPGEFTQMAGRAGRRG 762
>gi|300707105|ref|XP_002995775.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
gi|239604987|gb|EEQ82104.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
Length = 928
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ +GLN+ +IF+++KKFDGV+ R LT E Q++GRAGR G
Sbjct: 384 VLFATETFSIGLNMPAKSVIFTSLKKFDGVKTRHLTSAEYIQMSGRAGRRG 434
>gi|349580095|dbj|GAA25256.1| K7_Ski2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1287
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|401840058|gb|EJT42980.1| SKI2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 855
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F + VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LF--SKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>gi|421606375|ref|ZP_16047789.1| ATP-dependent helicase, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404261515|gb|EJZ27781.1| ATP-dependent helicase, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 161
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 65
D +DE+Q+ RG FT +L +E L G P+I+++L V +
Sbjct: 16 DVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSM 71
Query: 66 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 125
+ RLS L + +T IV FS +Y + + I R ++V GSL P
Sbjct: 72 ITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR-RQHGGAAVVLGSLSP 128
Query: 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 159
TR Q F + + D LVA+DA+GMGLNL++
Sbjct: 129 RTRNAQVAMFQNG--DVDYLVATDAVGMGLNLDV 160
>gi|443896240|dbj|GAC73584.1| cytoplasmic exosomal RNA helicase SKI2 [Pseudozyma antarctica T-34]
Length = 1284
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++FS+++K DG R+L E Q++GRAGR G P G V
Sbjct: 716 VLFATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLD-PTGVVI 774
Query: 204 CLDSEDLP---LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 260
++ LP +LHK LL L+S +++I R+ I F ENA
Sbjct: 775 INAADQLPETAVLHKMLLGQPTKLQSQFRL-TYNMILNLLRVEALKVEEMIKRSFSENA- 832
Query: 261 LSENYFFANCEEVLKVATVIDQLP--------LRLHEKYLFCISPVDMNDDIS--SQGLT 310
++ + ++ + +LP +L Y C + V N + + G
Sbjct: 833 -AQKMLPDQQRKAQELERQLSRLPHPQPEELDAQLATYYDLCAAVVASNQSLFELALGHQ 891
Query: 311 QFATNYSKKGIVQLRE 326
Q A N++ +V LR+
Sbjct: 892 QGAKNFAAGRVVVLRD 907
>gi|320593806|gb|EFX06209.1| ATP-dependent RNA helicase dob1 [Grosmannia clavigera kw1407]
Length = 1133
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ +GLN+ ++F+T++KFDGV +R LT E Q++GRAGR G
Sbjct: 521 VLFATETFSIGLNMPARTVVFTTVRKFDGVSMRPLTSSEYVQMSGRAGRRG 571
>gi|385679278|ref|ZP_10053206.1| DEAD/DEAH box helicase [Amycolatopsis sp. ATCC 39116]
Length = 836
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|84996619|ref|XP_953031.1| DEAD-family helicase [Theileria annulata strain Ankara]
gi|65304027|emb|CAI76406.1| DEAD-family helicase, putative [Theileria annulata]
Length = 1069
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 202
VL A++ MG+N+ ++F+++ K DG+ R LT E Q+AGRAGR G F +
Sbjct: 516 VLFATETFAMGVNMPARSVVFTSIYKHDGINYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 575
Query: 203 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
C D D+ L ++E S LES L+ + SR H + I E L++
Sbjct: 576 FCCDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQSRDHMN-----ITEMMLKS--- 627
Query: 262 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
F E+++K+ + Q+ + HE L + P+
Sbjct: 628 -----FREREKMMKIPLLKKQINKKKHE--LMSLPPI 657
>gi|302524172|ref|ZP_07276514.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
gi|302433067|gb|EFL04883.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
Length = 891
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 370 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 420
>gi|452952258|gb|EME57693.1| DEAD/DEAH box helicase [Amycolatopsis decaplanina DSM 44594]
Length = 834
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|403511104|ref|YP_006642742.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402803590|gb|AFR11000.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 834
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
+H + + + P+ R R R A V+ +D +G+G+N+ I ++F+ + K+DG
Sbjct: 284 RHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNVPIRTVLFTALSKYDG 341
Query: 173 VELRDLTVPEVKQIAGRAGRYG 194
V +R L E QIAGRAGR G
Sbjct: 342 VRVRRLRAREFHQIAGRAGRAG 363
>gi|451339543|ref|ZP_21910058.1| putative helicase [Amycolatopsis azurea DSM 43854]
gi|449417749|gb|EMD23387.1| putative helicase [Amycolatopsis azurea DSM 43854]
Length = 834
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|300782796|ref|YP_003763087.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|384146016|ref|YP_005528832.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|399534682|ref|YP_006547344.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|299792310|gb|ADJ42685.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|340524170|gb|AEK39375.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|398315452|gb|AFO74399.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
Length = 834
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|68479463|ref|XP_716263.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
gi|68479634|ref|XP_716180.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437839|gb|EAK97179.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437927|gb|EAK97266.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
Length = 1245
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKKA----------IESRGKHLCSIVYGSLPPETRTRQAT 133
F+N + I F A+ RLKK E G+ + ++ +G L P +
Sbjct: 604 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGI-AVHHGGLLPIVKECIEI 662
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F A S VL A++ MGLNL +IFS+M+K DG R+L E Q++GRAGR
Sbjct: 663 LF--AKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRR 720
Query: 194 G 194
G
Sbjct: 721 G 721
>gi|391343562|ref|XP_003746078.1| PREDICTED: helicase SKI2W [Metaseiulus occidentalis]
Length = 1137
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
+L A++ MG+N+ ++F ++K+DG + RDL E Q+AGRAGR G K VG V
Sbjct: 581 ILFATETFAMGVNMPARTVVFDRIRKYDGCQFRDLLPAEYIQMAGRAGRRG-KDTVGTVL 639
Query: 204 CLDSEDLP 211
+ D+P
Sbjct: 640 IMIHSDVP 647
>gi|399215847|emb|CCF72535.1| unnamed protein product [Babesia microti strain RI]
Length = 1024
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV- 202
VL A++ MG+N+ ++F++++K DG++ R LT E Q+AGRAGR G VG V
Sbjct: 475 VLFATETFAMGVNMPARSVVFTSIRKHDGLKNRILTSSEYTQMAGRAGRRGLD-SVGNVF 533
Query: 203 -TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 243
C+DS DL L L+E S L+S L+ + SR H
Sbjct: 534 IFCVDSPPDLQDLTMMLIEKSTPLKSRFRITYSMLLQVMSRNH 576
>gi|238880251|gb|EEQ43889.1| antiviral helicase SKI2 [Candida albicans WO-1]
Length = 1246
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKKA----------IESRGKHLCSIVYGSLPPETRTRQAT 133
F+N + I F A+ RLKK E G+ + ++ +G L P +
Sbjct: 605 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGI-AVHHGGLLPIVKECIEI 663
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F A S VL A++ MGLNL +IFS+M+K DG R+L E Q++GRAGR
Sbjct: 664 LF--AKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRR 721
Query: 194 G 194
G
Sbjct: 722 G 722
>gi|297559749|ref|YP_003678723.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844197|gb|ADH66217.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 835
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
+H + + + P+ R R R S V+ +D +G+G+N+ I ++F+ + K+DG
Sbjct: 284 RHGIGVHHAGMLPKYR-RLVERLAQ-SGLLKVICGTDTLGVGVNVPIRTVLFTALSKYDG 341
Query: 173 VELRDLTVPEVKQIAGRAGRYG 194
V +R L E QIAGRAGR G
Sbjct: 342 VRVRRLRAREFHQIAGRAGRAG 363
>gi|407927428|gb|EKG20322.1| Helicase [Macrophomina phaseolina MS6]
Length = 1283
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 101 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160
I RL++ + SRG ++ +G + P + F A + +L A++ MGLNL
Sbjct: 672 IRRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKILFATETFAMGLNLPTR 725
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202
++FS +K DG + RDL E Q+AGRAGR G PVG V
Sbjct: 726 TVVFSGYRKHDGRQFRDLLPGEYTQMAGRAGRRGLD-PVGSV 766
>gi|452822286|gb|EME29307.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1249
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ +IFS+++K DG + R + E Q+AGRAGR G VG V
Sbjct: 684 VLFATETFAMGVNMPAKTVIFSSIRKHDGRKFRWMQPGEYIQMAGRAGRRGID-SVGTVL 742
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
EDLP + ++L + + L F L Y
Sbjct: 743 LFLEEDLPEM--NILRKVMIGQPVNLLSQFRLTY 774
>gi|88855071|ref|ZP_01129736.1| putative helicase [marine actinobacterium PHSC20C1]
gi|88815599|gb|EAR25456.1| putative helicase [marine actinobacterium PHSC20C1]
Length = 849
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---SKFPVG 200
V+ +D +G+G+N+ I ++ + + K+DG+ +R LT E QIAGRAGR G + V
Sbjct: 314 VICGTDTLGVGINVPIRTVLLTQLTKYDGIRMRQLTAREFHQIAGRAGRAGFDTAGTVVA 373
Query: 201 EVTCLDSEDLPLLHKSLLEP 220
+ +SE+ ++ K+ +P
Sbjct: 374 QAPDHESENAKMVSKAGDDP 393
>gi|296129034|ref|YP_003636284.1| DEAD/DEAH box helicase [Cellulomonas flavigena DSM 20109]
gi|296020849|gb|ADG74085.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
20109]
Length = 866
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I + +++ K+DGV +R LT E QIAGRAGR G VGEV
Sbjct: 320 VVCGTDTLGVGINVPIRTVALTSLVKYDGVRMRHLTAREFHQIAGRAGRAGFDT-VGEVV 378
Query: 204 C 204
Sbjct: 379 V 379
>gi|301627725|ref|XP_002943020.1| PREDICTED: helicase SKI2W [Xenopus (Silurana) tropicalis]
Length = 1249
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
+L A++ MG+N+ ++F +++K DG RDLT E Q+AGRAGR G G V
Sbjct: 658 ILFATETFAMGVNMPARTVVFDSIRKHDGSNFRDLTPGEYIQMAGRAGRRGLD-NTGMVI 716
Query: 204 CLDSEDLPL---LHKSLLEPSPMLES 226
L D+P LHK +L L+S
Sbjct: 717 ILCKADVPEMSDLHKMMLGKPTQLQS 742
>gi|334337622|ref|YP_004542774.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107990|gb|AEG44880.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 916
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++ +++ KFDG +R LT E QIAGRAGR G VGEV
Sbjct: 345 VVCGTDTLGVGINVPIRTVLMTSLVKFDGERMRHLTAREFHQIAGRAGRAGFDT-VGEVL 403
Query: 204 CLDSEDLPLLHKSL 217
+ E + K+L
Sbjct: 404 VMAPEHVIENRKAL 417
>gi|365824422|ref|ZP_09366496.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
gi|365259482|gb|EHM89467.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
Length = 884
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+++ KFDG + R LT E QIAGRAGR G
Sbjct: 326 VICGTDTLGVGINVPIRCVVFTSLVKFDGAKERHLTAREFHQIAGRAGRAG 376
>gi|330918124|ref|XP_003298097.1| hypothetical protein PTT_08699 [Pyrenophora teres f. teres 0-1]
gi|311328882|gb|EFQ93791.1| hypothetical protein PTT_08699 [Pyrenophora teres f. teres 0-1]
Length = 1298
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 101 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 673 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 726
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 727 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 760
>gi|406602291|emb|CCH46129.1| antiviral helicase SKI2 [Wickerhamomyces ciferrii]
Length = 1263
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQATR 134
F N + I F A+ RLKK AI ++ +G L P +
Sbjct: 623 FCNAKEKSQIHMFIDKAVARLKKEDRELPQIIAIREMLSRGIAVHHGGLLPIVKEVIEIL 682
Query: 135 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
F + + VL A++ MGLNL ++FS ++K DG RDL E Q++GRAGR G
Sbjct: 683 F--SKTLIKVLFATETFAMGLNLPTRTVVFSELRKHDGTGFRDLLPGEFTQMSGRAGRRG 740
>gi|344307274|ref|XP_003422307.1| PREDICTED: helicase SKI2W [Loxodonta africana]
Length = 1246
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++F TM+K DG RDL E Q+AGRAGR G P G V
Sbjct: 658 VLFATETFAMGVNMPARTVVFDTMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 716
Query: 204 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 237
L +P LH+ ++ L+S F L Y
Sbjct: 717 LLCKGRVPEMADLHRMMMGKPSQLQS-----QFRLTY 748
>gi|336120721|ref|YP_004575507.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334688519|dbj|BAK38104.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 799
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
++ +D +G+G+N+ I ++F+++ K+DGV+ R LT E QIAGRAGR G
Sbjct: 266 IICGTDTLGVGINVPIRTVLFTSLSKYDGVKPRLLTAREFHQIAGRAGRAG 316
>gi|189205050|ref|XP_001938860.1| RNA helicase involved in mRNA catabolism [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985959|gb|EDU51447.1| RNA helicase involved in mRNA catabolism [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1120
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 101 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 626 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 679
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 680 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 713
>gi|383822612|ref|ZP_09977829.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
gi|383330699|gb|EID09219.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
Length = 845
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 323 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 373
>gi|302335291|ref|YP_003800498.1| DEAD/DEAH box helicase [Olsenella uli DSM 7084]
gi|301319131|gb|ADK67618.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
Length = 858
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---SKFPVG 200
V+ +D +G+G+N+ I ++ + + KFDG +R L E QIAGRAGR G +
Sbjct: 326 VICGTDTLGVGINVPIHTVVLTALSKFDGRRMRHLNAREFHQIAGRAGRAGFDTEGVVIA 385
Query: 201 EVTCLDSEDLPLLHKSLLEP 220
E T D E+ L K+ +P
Sbjct: 386 EATEYDIENARALAKAGGDP 405
>gi|269127028|ref|YP_003300398.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268311986|gb|ACY98360.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 837
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 172
+H + + + P+ R R R A V+ +D +G+G+N+ I ++F+ + KFDG
Sbjct: 286 RHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNVPIRTVVFTALSKFDG 343
Query: 173 VELRDLTVPEVKQIAGRAGRYG 194
+R L E QIAGRAGR G
Sbjct: 344 QRVRRLRAREFHQIAGRAGRAG 365
>gi|294945500|ref|XP_002784711.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239897896|gb|EER16507.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1086
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ +IFS+++K DG + R L E Q++GRAGR G VG V
Sbjct: 480 VLFATETFAMGVNMPARSVIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLD-SVGNVY 538
Query: 204 CLDSEDLPLL 213
L +E+LP L
Sbjct: 539 VLAAEELPDL 548
>gi|241959260|ref|XP_002422349.1| RNA helicase, putative; antiviral helicase ski2 homologue,
putative; superkiller protein 2 homologue, putative
[Candida dubliniensis CD36]
gi|223645694|emb|CAX40355.1| RNA helicase, putative [Candida dubliniensis CD36]
Length = 1233
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLKKA----------IESRGKHLCSIVYGSLPPETRTRQAT 133
F+N + I F A+ RLKK E G+ + ++ +G L P +
Sbjct: 592 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGI-AVHHGGLLPIVKECIEI 650
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F A S VL A++ MGLNL ++FS+M+K DG R+L E Q++GRAGR
Sbjct: 651 LF--AKSLVKVLFATETFAMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMSGRAGRR 708
Query: 194 G 194
G
Sbjct: 709 G 709
>gi|326436235|gb|EGD81805.1| DEAD/DEAH box helicase [Salpingoeca sp. ATCC 50818]
Length = 1034
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ MGLN+ ++FS +KKFDG E R L+ E Q++GRAGR G
Sbjct: 472 VLFATETFAMGLNMPAKTVVFSNVKKFDGKEFRPLSSGEYIQMSGRAGRRG 522
>gi|299756424|ref|XP_002912202.1| translation repressor [Coprinopsis cinerea okayama7#130]
gi|298411671|gb|EFI28708.1| translation repressor [Coprinopsis cinerea okayama7#130]
Length = 1248
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
+L A++ MG+N+ ++FS+M+K DG RD+ E Q+AGRAGR G P G V
Sbjct: 670 ILFATETFAMGVNMPAKCVVFSSMRKHDGKSFRDILPGEYTQMAGRAGRRGLD-PTGTVI 728
Query: 204 CLDSEDLP 211
+ ++LP
Sbjct: 729 IVCGDNLP 736
>gi|311744414|ref|ZP_07718215.1| DEAD/DEAH box helicase [Aeromicrobium marinum DSM 15272]
gi|311312219|gb|EFQ82135.1| DEAD/DEAH box helicase [Aeromicrobium marinum DSM 15272]
Length = 839
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DG R L V E +QIAGRAGR G
Sbjct: 315 VVCGTDTLGVGINVPIRTVLFSGLSKYDGTRQRQLQVREFQQIAGRAGRAG 365
>gi|396459815|ref|XP_003834520.1| hypothetical protein LEMA_P061890.1 [Leptosphaeria maculans JN3]
gi|312211069|emb|CBX91155.1| hypothetical protein LEMA_P061890.1 [Leptosphaeria maculans JN3]
Length = 1281
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 101 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 670 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 723
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 724 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 757
>gi|71028712|ref|XP_763999.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350953|gb|EAN31716.1| hypothetical protein TP04_0364 [Theileria parva]
Length = 1069
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 202
VL A++ MG+N+ ++F+++ K DG+ R LT E Q+AGRAGR G F +
Sbjct: 516 VLFATETFAMGVNMPARSVVFTSIYKHDGITYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 575
Query: 203 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
C D D+ L ++E S LES L+ + SR H + I E L++
Sbjct: 576 FCSDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQSRDHMN-----ITEMMLKS--- 627
Query: 262 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 298
F E+++K+ + Q+ + HE L + P+
Sbjct: 628 -----FREREKMMKIPLLKKQINKKKHE--LMSLPPI 657
>gi|395533841|ref|XP_003768961.1| PREDICTED: helicase SKI2W [Sarcophilus harrisii]
Length = 1249
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 661 VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 719
Query: 204 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 237
L +P LH+ +L L+S F L Y
Sbjct: 720 LLCKGRVPEMADLHRMMLGKPSQLQS-----QFRLTY 751
>gi|269794417|ref|YP_003313872.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269096602|gb|ACZ21038.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 869
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++ +++ KFDG +R LT E QIAGRAGR G +G+V
Sbjct: 330 VVCGTDTLGVGINVPIRTVLLTSVVKFDGERMRHLTAREFHQIAGRAGRAGYD-TMGDVI 388
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFP 231
+ E ++E +LE AG P
Sbjct: 389 VMAPE-------HVIENRKLLERAGDDP 409
>gi|126309591|ref|XP_001369051.1| PREDICTED: helicase SKI2W [Monodelphis domestica]
Length = 1249
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 661 VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 719
Query: 204 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 237
L +P LH+ +L L+S F L Y
Sbjct: 720 LLCKGRVPEMADLHRMMLGKPSQLQS-----QFRLTY 751
>gi|433648753|ref|YP_007293755.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
gi|433298530|gb|AGB24350.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
Length = 849
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 325 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 375
>gi|288918025|ref|ZP_06412383.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
gi|288350543|gb|EFC84762.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
Length = 879
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + K+DG R LT E QIAGRAGR G
Sbjct: 354 VICGTDTLGVGINVPIRTVVFTALSKYDGTRTRILTAREFHQIAGRAGRAG 404
>gi|72161282|ref|YP_288939.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915014|gb|AAZ54916.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 838
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + K+DG +R LT E QIAGRAGR G
Sbjct: 314 VICGTDTLGVGVNVPIRTVLFTALSKYDGSRVRRLTAREFHQIAGRAGRAG 364
>gi|335051326|ref|ZP_08544251.1| DEAD/DEAH box helicase [Propionibacterium sp. 409-HC1]
gi|333767069|gb|EGL44332.1| DEAD/DEAH box helicase [Propionibacterium sp. 409-HC1]
Length = 505
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 140 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 199
+ V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G V
Sbjct: 285 GKLKVICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TV 343
Query: 200 GEVTCLDSEDLPLLHKSL 217
G V E + HK+L
Sbjct: 344 GYVVAQAPEHVIANHKAL 361
>gi|357019047|ref|ZP_09081305.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356481108|gb|EHI14218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 851
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 327 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 377
>gi|294899270|ref|XP_002776564.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239883606|gb|EER08380.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1069
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ +IFS+++K DG + R L E Q++GRAGR G VG V
Sbjct: 462 VLFATETFAMGVNMPARSVIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLD-SVGNVY 520
Query: 204 CLDSEDLPLL 213
L +E+LP L
Sbjct: 521 VLAAEELPDL 530
>gi|169610287|ref|XP_001798562.1| hypothetical protein SNOG_08240 [Phaeosphaeria nodorum SN15]
gi|160702024|gb|EAT84516.2| hypothetical protein SNOG_08240 [Phaeosphaeria nodorum SN15]
Length = 1288
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 101 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 677 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 730
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 731 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 764
>gi|115379713|ref|ZP_01466790.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|310820840|ref|YP_003953198.1| dead/deah box helicase [Stigmatella aurantiaca DW4/3-1]
gi|115363279|gb|EAU62437.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|309393912|gb|ADO71371.1| DEAD/DEAH box helicase [Stigmatella aurantiaca DW4/3-1]
Length = 846
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 45/236 (19%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQ-V 58
M D + D V+DE + RG ++ LLG+ L + +I++ L+ +
Sbjct: 141 MRDSRAPVDYVVMDEFHYYSDRERGTAWQLPLLGLQNTTFLMMSATLGDTHIIEEGLKKL 200
Query: 59 TGDDV-KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL---KKAIESRGKH 114
TG DV V+S +R VPL+ +T +V ++ IY + ++A + ++
Sbjct: 201 TGKDVVSVRSAKRP---VPLDFDYRETPLHETIQDLVARGKYPIYLVNFTQRAAAEQAQN 257
Query: 115 LCSIVYGSLPPETRTRQA--------------TRFND----------------------A 138
L S+ + + + RQA RF
Sbjct: 258 LMSVDFCTKEEKEAIRQALMEAPFDTPYGKEFQRFLRHGVGMHHAGLLPKYRLLVEKLAQ 317
Query: 139 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
S V+ +D +G+G+N+ I ++F+ + KF+G +L L+V + +QIAGRAGR G
Sbjct: 318 SGHLKVISGTDTLGVGVNIPIRTVLFTQLFKFNGEKLATLSVRDFQQIAGRAGRKG 373
>gi|403224053|dbj|BAM42183.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 1071
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 202
VL A++ MG+N+ ++F+++ K DG++ R LT E Q+AGRAGR G F +
Sbjct: 518 VLFATETFAMGVNMPARSVVFTSIYKHDGIKYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 577
Query: 203 TCLD-SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 261
C D + D+ L ++E S LES L+ + SR H + + +L+ F E K+
Sbjct: 578 FCSDEAPDVQDLTNMIIERSTRLESRFRITYNMLLQIQSRDHMNITEM-MLKSFREREKM 636
>gi|255950278|ref|XP_002565906.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592923|emb|CAP99292.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1265
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 84 FSNIQTGDCIVTFSRHAIYRLK------------KAIESRGKHLCSIVYGSLPPETRTRQ 131
FSN F A+ RLK + + SRG ++ +G L P +
Sbjct: 620 FSNSTEKSLTHMFIEKALTRLKPEDRTLPQILRLRELLSRG---IAVHHGGLLPIVKEVV 676
Query: 132 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191
F A S VL A++ MGLNL ++FS +K DG RDL E Q+AGRAG
Sbjct: 677 EILF--AKSLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGKAFRDLLPGEYTQMAGRAG 734
Query: 192 RYG 194
R G
Sbjct: 735 RRG 737
>gi|284991492|ref|YP_003410046.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064737|gb|ADB75675.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 847
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DG R L V E QIAGRAGR G
Sbjct: 326 VICGTDTLGVGINVPIRTVVFSALSKYDGTRTRLLQVREFHQIAGRAGRAG 376
>gi|158315974|ref|YP_001508482.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158111379|gb|ABW13576.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 950
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + K+DG R LT E QIAGRAGR G
Sbjct: 428 VICGTDTLGVGINVPIRTVVFTALSKYDGTRTRILTAREFHQIAGRAGRAG 478
>gi|269957158|ref|YP_003326947.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305839|gb|ACZ31389.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 894
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++ + + KFDG +R LT E QIAGRAGR G +GEV
Sbjct: 339 VVAGTDTLGVGINVPIRTVLMTGLVKFDGERMRHLTAREFHQIAGRAGRAGFDT-IGEVL 397
Query: 204 CLDSEDLPLLHKSL 217
+ E + K+L
Sbjct: 398 VMAPEHVIENRKAL 411
>gi|163841027|ref|YP_001625432.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954503|gb|ABY24018.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 845
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + K+DGV R L E QIAGRAGR G
Sbjct: 314 VICGTDTLGVGINVPIRTVLFTALSKYDGVRTRTLQAREFHQIAGRAGRAG 364
>gi|386866861|ref|YP_006279855.1| DEAD/DEAH box helicase [Bifidobacterium animalis subsp. animalis
ATCC 25527]
gi|385700944|gb|AFI62892.1| DEAD box-like helicase [Bifidobacterium animalis subsp. animalis
ATCC 25527]
Length = 862
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I +I + + KFDG+ +R L E QIAGRAGR G
Sbjct: 328 VICGTDTLGVGINVPIHSVILTQLTKFDGIHMRKLRAREFHQIAGRAGRSG 378
>gi|444432037|ref|ZP_21227197.1| putative helicase [Gordonia soli NBRC 108243]
gi|443887211|dbj|GAC68918.1| putative helicase [Gordonia soli NBRC 108243]
Length = 698
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + K+DGV +R L E QIAGRAGR G
Sbjct: 314 VVAGTDTLGVGINVPIRTVLFAGLSKYDGVRVRRLRAREFHQIAGRAGRAG 364
>gi|71003748|ref|XP_756540.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
gi|46095704|gb|EAK80937.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
Length = 1301
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++FS+++K DG R+L E Q++GRAGR G G V
Sbjct: 726 VLFATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLD-ATGVVI 784
Query: 204 CLDSEDLP---LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA- 259
++ LP +LHK+LL P S+ +++I R+ I F ENA
Sbjct: 785 INAADQLPETAVLHKTLL-GQPTKLSSQFRLTYNMILNLLRVEALKVEEMIKRSFSENAA 843
Query: 260 -KLSENYFFANCEEVLKVATVIDQLPLRLHEK----YLFCISPVDMNDDIS--SQGLTQF 312
K+ + E K+A P L E+ Y C + V N + + G Q
Sbjct: 844 QKMLPDQQKKAQELEKKLAKAQHPQPPELDEQMSTYYDLCAAVVASNQSLFELALGHQQG 903
Query: 313 ATNYSKKGIVQLRE 326
A N+ +V LR+
Sbjct: 904 AKNFGAGRVVILRD 917
>gi|379735837|ref|YP_005329343.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
gi|378783644|emb|CCG03312.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
Length = 853
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++FS + K+DG R L V E QIAGRAGR G
Sbjct: 330 VICGTDTLGVGINVPIRTVVFSALSKYDGTRTRLLQVREFHQIAGRAGRAG 380
>gi|429329445|gb|AFZ81204.1| DEAD/DEAH box helicase domain-containing protein [Babesia equi]
Length = 1116
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 142
S SNI GD + R I L + I L I+ ++ +
Sbjct: 500 SLSNISEGDKNIPQLRSIIKLLHRGIGIHHSGLLPII----------KEIVEILFSKGLI 549
Query: 143 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGE 201
VL A++ MG+N+ ++F+++ K DG + R LT E Q+AGRAGR G F
Sbjct: 550 KVLFATETFAMGVNMPARSVVFTSIYKHDGQKGRYLTASEYTQMAGRAGRRGLDSFGSVY 609
Query: 202 VTCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 260
+ C D DL L ++E S LES L+ + SR H + + +L+ F E K
Sbjct: 610 IFCSDDPPDLQDLTAMMIEKSTRLESRFRITYNMLLQIQSRDHMNITEM-MLKSFREREK 668
Query: 261 L 261
+
Sbjct: 669 M 669
>gi|256824557|ref|YP_003148517.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256687950|gb|ACV05752.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
Length = 891
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ +D +G+G+N+ I ++F+ + KFDG +R L E QIAGRAGR G
Sbjct: 336 VIAGTDTLGVGINVPIRTVLFTGLAKFDGTRMRVLKAREFHQIAGRAGRAG 386
>gi|451996958|gb|EMD89424.1| hypothetical protein COCHEDRAFT_1226517 [Cochliobolus
heterostrophus C5]
Length = 1285
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 138 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
A + VL A++ MGLNL ++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 705 AKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 761
>gi|451847860|gb|EMD61167.1| hypothetical protein COCSADRAFT_97802 [Cochliobolus sativus ND90Pr]
Length = 1285
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 138 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
A + VL A++ MGLNL ++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 705 AKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 761
>gi|162329428|ref|YP_001604228.1| putative helicase [Acidianus filamentous virus 7]
gi|157310326|emb|CAJ31623.1| putative helicase [Acidianus filamentous virus 7]
Length = 593
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 38/212 (17%)
Query: 12 VIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYER 70
+IDEI +G K RG + L+ NE + L A +P I +I VT +V +Q+ ER
Sbjct: 119 IIDEIHNVGDKERGKAIEN-LMAYAMNEGIRLIMMSATIPDIDKIANVTNAEV-LQTDER 176
Query: 71 LSPLVPLNVPLGSFSNIQTGD-------------------CIVTFSRHAIYRLKKAIESR 111
P+ + +G + GD I T +R L + R
Sbjct: 177 PIPIYKA-IKIGKTLFFEDGDKIEMKDDLVTKLTKKGKVVMIFTSTRKKAEELYLIYDKR 235
Query: 112 GKHLCSIVYGSLPPETRTR--QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK- 168
+ + + L P+ + R + T+ + ++++++ + A+G G+N +IF +K
Sbjct: 236 YRERVAFFHAGLEPDAKLRLLEETK----AGKYNIIITTTALGQGVNFPFYAVIFDDLKL 291
Query: 169 ------KFDGVELRDLTVPEVKQIAGRAGRYG 194
+F G R LT E QI GRAGR G
Sbjct: 292 PIIEYGRFIG--WRSLTPIEFDQICGRAGRPG 321
>gi|351713165|gb|EHB16084.1| Helicase SKI2W [Heterocephalus glaber]
Length = 1238
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 685 VLFATETFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLD-PTGTVV 743
Query: 204 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 237
L +P LH+ ++ L+S F L Y
Sbjct: 744 LLCKARVPEMADLHRMMMGKPSQLQS-----QFRLTY 775
>gi|269860278|ref|XP_002649861.1| helicase, predicted [Enterocytozoon bieneusi H348]
gi|220066701|gb|EED44174.1| helicase, predicted [Enterocytozoon bieneusi H348]
Length = 952
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 12/72 (16%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--------- 194
+L A+++ +GLN+ +IF+++KKFDG E R LT E Q++GRAGR G
Sbjct: 383 ILFATESFSIGLNMPAKTVIFTSLKKFDGHEERILTSGEYCQMSGRAGRRGLDKEGIIVS 442
Query: 195 ---SKFPVGEVT 203
K +GEVT
Sbjct: 443 LCSEKISIGEVT 454
>gi|456739205|gb|EMF63772.1| ski2-type helicase [Propionibacterium acnes FZ1/2/0]
Length = 863
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 338 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 396
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 397 AQAPEHVIANHKAL 410
>gi|422522941|ref|ZP_16598957.1| DNA or RNA helicase superfamily II [Propionibacterium acnes
HL053PA2]
gi|315079324|gb|EFT51325.1| DNA or RNA helicase superfamily II [Propionibacterium acnes
HL053PA2]
Length = 735
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 210 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 268
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 269 AQAPEHVIANHKAL 282
>gi|422437403|ref|ZP_16514250.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422492639|ref|ZP_16568944.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422515037|ref|ZP_16591154.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422530681|ref|ZP_16606639.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422535628|ref|ZP_16611545.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|313793667|gb|EFS41698.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313802979|gb|EFS44187.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313839391|gb|EFS77105.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|315082379|gb|EFT54355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|327455999|gb|EGF02654.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
Length = 863
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 338 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 396
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 397 AQAPEHVIANHKAL 410
>gi|422528180|ref|ZP_16604165.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314975014|gb|EFT19109.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
Length = 863
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 338 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 396
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 397 AQAPEHVIANHKAL 410
>gi|422458275|ref|ZP_16534931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|315104643|gb|EFT76619.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
Length = 863
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 338 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 396
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 397 AQAPEHVIANHKAL 410
>gi|422574843|ref|ZP_16650391.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|314924384|gb|EFS88215.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
Length = 863
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG V
Sbjct: 338 VICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVGYVV 396
Query: 204 CLDSEDLPLLHKSL 217
E + HK+L
Sbjct: 397 AQAPEHVIANHKAL 410
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,402,562,452
Number of Sequences: 23463169
Number of extensions: 266736716
Number of successful extensions: 578047
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 572640
Number of HSP's gapped (non-prelim): 3286
length of query: 414
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 269
effective length of database: 8,957,035,862
effective search space: 2409442646878
effective search space used: 2409442646878
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)