BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015049
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IYB8|SUV3_HUMAN ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens
GN=SUPV3L1 PE=1 SV=1
Length = 786
Score = 301 bits (770), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P + +AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F++ +++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635
Query: 353 DLYVWLSFRLEESFPDREL 371
DLY+WLS+R + FPD L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
>sp|Q80YD1|SUV3_MOUSE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus
GN=Supv3l1 PE=2 SV=1
Length = 779
Score = 300 bits (769), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 240/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N+Q GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVQKYERLTPISVLDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F G+VT + +DL LL L P +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD L S + +I+E
Sbjct: 636 DLYLWLSYRFIDMFPDSSLVRSLQKELDAIIQE 668
>sp|Q5EBA1|SUV3_RAT ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus
norvegicus GN=Supv3l1 PE=2 SV=1
Length = 776
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 241/393 (61%), Gaps = 10/393 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M +V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG
Sbjct: 278 MCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTG 337
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+VQ YERL+P+ L+ L S N++ GDCIV FS++ IY + + IE RG +++Y
Sbjct: 338 EEVEVQKYERLTPISVLDRALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++ K EL
Sbjct: 397 GSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEL 456
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+ S F GEVT + +DL LL + L P +++AGL P +
Sbjct: 457 EPITTSQALQIAGRAGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQ 516
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P+++L +++ F++ A++ YF N ++ A +I +PL L +Y+FC
Sbjct: 517 IEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
+P++ L QFA YS+ LR + L PK L +LE++H V
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVF 635
Query: 353 DLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385
DLY+WLS+R + FPD S + ++I+E
Sbjct: 636 DLYLWLSYRFIDMFPDSSFVRSLQKELDVIIQE 668
>sp|Q5ZJT0|SUV3_CHICK ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus
GN=SUPV3L1 PE=2 SV=1
Length = 794
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 237/378 (62%), Gaps = 8/378 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG
Sbjct: 266 MCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMYTTG 325
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + + IE+RG C+++Y
Sbjct: 326 EEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQIEARGLE-CAVIY 384
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----TMKKFDGVEL 175
GSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+ T+ + E+
Sbjct: 385 GSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEI 444
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
+T + QIAGRAGR+GS F GEVT + +DL L + L E P +++AGL P +
Sbjct: 445 DSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLLQLKEILSEAVPPVKAAGLHPTPEQ 504
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ PD++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 505 IEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 564
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
+P++ + L +FA +S+ + + T L PK L LE++H V D
Sbjct: 565 APLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAVHDVFD 624
Query: 354 LYVWLSFRLEESFPDREL 371
LY+WLS+R + FPD L
Sbjct: 625 LYLWLSYRFMDMFPDAAL 642
>sp|A4IG62|SUV3_DANRE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio
GN=supv3l1 PE=2 SV=1
Length = 763
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 232/377 (61%), Gaps = 12/377 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ AAV I +++ TG
Sbjct: 276 MCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTG 335
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
++V+V +Y+RL+P N + S N++ GDCIV FS++ IY + + IE RG C+++Y
Sbjct: 336 EEVEVHNYKRLTPFSISNHAVESLDNLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIY 394
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD-----GVEL 175
GSLPP T+ QA +FND +LVA+DAIGMGLNL+I RIIF+++ K E+
Sbjct: 395 GSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEV 454
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++ + QIAGRAGR+ S F GEVT + +DLP+L + L +P + +AGL P +
Sbjct: 455 DTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQ 514
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
I M++ P ++L +++ F+ +++ YF N ++ +A +I +PL L +Y+FC
Sbjct: 515 IEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCT 574
Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQL----REIFTPGTLQVPKTQAALRELESIHKV 351
+P++ +FA +S+ + R++ P L PK L LE++H V
Sbjct: 575 APINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWP--LSPPKNIKDLVHLEAVHDV 632
Query: 352 LDLYVWLSFRLEESFPD 368
LDLY+WLS+R + FPD
Sbjct: 633 LDLYLWLSYRFMDMFPD 649
>sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila melanogaster GN=CG9791 PE=2 SV=3
Length = 763
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 225/376 (59%), Gaps = 9/376 (2%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L ++ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I + L L +Y+FC
Sbjct: 504 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I ++PKT L LE++ V+
Sbjct: 564 CAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY+WLS+R + FP+
Sbjct: 624 DLYLWLSYRFMDLFPE 639
>sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=GA22038
PE=3 SV=1
Length = 762
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 223/376 (59%), Gaps = 14/376 (3%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+ A+ L+Q+I + TG
Sbjct: 265 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAGALELLQKICETTG 324
Query: 61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 325 ETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 383
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 175
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF TM + E+
Sbjct: 384 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREI 443
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
++V QIAGRAGR+ +++ G VT SEDL L + L + L+ AGL P D
Sbjct: 444 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPEPLKQAGLHPTADQ 503
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 294
I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I +PL L +Y+FC
Sbjct: 504 IELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFC 563
Query: 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQAALRELESIHKVL 352
+P++ + A YS+ + I + ++PKT L LES+ V+
Sbjct: 564 CAPINRKMPFVCSMFLKIARQYSRNEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVM 623
Query: 353 DLYVWLSFRLEESFPD 368
DLY R + FP+
Sbjct: 624 DLY-----RFMDLFPE 634
>sp|Q17828|SUV3_CAEEL ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis elegans GN=C08F8.2 PE=3 SV=2
Length = 721
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 226/389 (58%), Gaps = 13/389 (3%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ AVIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 275 EVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYY 334
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
ER SPL + + S+SNI+ GDCIV FS+ +I+ K +E G +++YG LPP T+
Sbjct: 335 ERKSPLAIADKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTK 393
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 394 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 449
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 450 RAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASF 509
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ D +S
Sbjct: 510 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAV 569
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A +S G E PK L E LE +++LD Y+WLS R +
Sbjct: 570 FVKMARRFS-TGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPDM 628
Query: 366 FPD----RELAASQKAICSMLIEEFLERL 390
PD RE + ++ +E F+ L
Sbjct: 629 LPDEPRVREASKHLDSMIQEGVESFMSLL 657
>sp|Q61SU7|SUV3_CAEBR ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis briggsae GN=CBG06022 PE=3 SV=3
Length = 721
Score = 258 bits (659), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 224/383 (58%), Gaps = 9/383 (2%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
+ VIDEIQML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y
Sbjct: 273 EVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYY 332
Query: 69 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 128
+R SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 333 DRKSPLTIADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTK 391
Query: 129 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 188
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAG
Sbjct: 392 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAG 447
Query: 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 248
RAGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 448 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASF 507
Query: 249 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 308
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ +D ++
Sbjct: 508 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAV 567
Query: 309 LTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEES 365
+ A ++ G E PK + L E LE ++VLD Y+WLS R +
Sbjct: 568 FVKMARRFA-TGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEVLDQYMWLSMRFPDM 626
Query: 366 FPDRELAASQKAICSMLIEEFLE 388
PD I +I++ +E
Sbjct: 627 LPDEPRVRDASKILDKMIQDGVE 649
>sp|O94445|SUV3_SCHPO ATP-dependent RNA helicase suv3, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suv3 PE=3 SV=1
Length = 647
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 219/386 (56%), Gaps = 40/386 (10%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M ++ + +D AVIDEIQM+ +RG+++T+ LLG+ A E+HLCG+ + V L++ I ++T
Sbjct: 247 MCNLSTTFDVAVIDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQ 306
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
DD V YERL+PL L G S ++ GDC+V FSR I+ LK I+ +++
Sbjct: 307 DDFTVYRYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVI 366
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPE R +QA+ FN SS+ ++L+ASDAIGMGLNL + RI+FS +KKF GV D+
Sbjct: 367 YGSLPPEVRNQQASLFNSKSSDENILLASDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIP 426
Query: 180 VPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236
VP++KQIAGRAGR+ GSK G VT L +D L++++ P+ L +A + DL
Sbjct: 427 VPQIKQIAGRAGRHNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLF 486
Query: 237 YMYSRLHPDSSLYG-ILEHFLENAKLSENY---------FFANCEEVLKVATVIDQL--- 283
+ Y L D I + + + AK + + F + +K T+ D++
Sbjct: 487 FRYLSLFSDDIPQKLIFDRYFKLAKTTTPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLL 546
Query: 284 --PLRLHEKYLFCISPVDMNDD--ISSQGLTQFATNYSKKGIVQLR----EIFTPGTLQV 335
P+ H KY +P+ + + + +QG + I L+ EI G +
Sbjct: 547 GCPVLKHSKY----APLFIREIGCVIAQG--------KRLQIYDLKSVPLEILERG---I 591
Query: 336 PKTQAALRELESIHKVLDLYVWLSFR 361
P T+ L++LE +HK++ Y+W S R
Sbjct: 592 PTTETELQQLEQLHKLIVAYMWASIR 617
>sp|O74727|SUV3_SACDO ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
douglasii GN=SUV3 PE=3 SV=1
Length = 737
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HL G+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDADRGWAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L + P+ ++ GDC+V FS+ + LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEDKPVKDGIKGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ SK P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSKSTSGGVPQGFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE + S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSDLLQTISDELERS--SDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>sp|P32580|SUV3_YEAST ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUV3 PE=1
SV=2
Length = 737
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
M + +D V+DEIQM+ RG+++T ALLG+ + E+HLCG+ + +PL++ I+++TG
Sbjct: 311 MVPINQKFDVVVLDEIQMMSDGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTG 370
Query: 61 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 119
D + + YERL L P+ ++ GDC+V FS+ I LK IE +++
Sbjct: 371 DKLTINEYERLGKLSVEEKPIKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVI 430
Query: 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 179
YGSLPPETR +QA FN+ E+D++VASDAIGMGLNL+I R++F+T K++G EL ++T
Sbjct: 431 YGSLPPETRVQQAALFNNG--EYDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMT 488
Query: 180 VPEVKQIAGRAGRYGSK-----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 234
++KQI GRAGR+ S+ P G +T +S+ L + K++ P L++A +P +
Sbjct: 489 SSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDE 548
Query: 235 ----LIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLH 288
L+ + P S L + LE K S+N F ++ + LKV + + + +
Sbjct: 549 ICAQLMTQFPPGTPTSVLLQTISDELE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFF 606
Query: 289 EKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ----VPKTQAALR 343
+K +PV DM + ++ T+F +K+ L P L +P +L
Sbjct: 607 DKLKLSNAPVKDM--PMVTKAFTKFCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLE 664
Query: 344 ELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
ES++ ++ LY WLS R F D E A K C M+I E L+RL
Sbjct: 665 VYESLYNIITLYFWLSNRYPNYFIDMESAKDLKYFCEMIIFEKLDRL 711
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 83 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 133
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 194 G 194
G
Sbjct: 768 G 768
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 658 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 716
Query: 204 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 237
L +P LH+ ++ L+S F L Y
Sbjct: 717 LLCKGRVPEMADLHRMMMGKPSQLQS-----QFRLTY 748
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ MG+N+ ++FS +K DG RDL E Q +GRAGR G G V
Sbjct: 642 VLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDV-TGTVI 700
Query: 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237
L +LP + L M S+ L F L Y
Sbjct: 701 ILSRSELP--DTASLRHMIMGPSSKLISQFRLTY 732
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ MGLN+ ++F++ +KFDG + R +T E Q+AGRAGR G
Sbjct: 465 VLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRG 515
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 145 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204
L A++ MG+N+ ++F+ +KFDG + R ++ E Q++GRAGR G +
Sbjct: 479 LFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
Query: 205 LDSEDLPLLHKSLLEPS 221
+D + P + K LL+ S
Sbjct: 539 VDEKMSPTIGKQLLKGS 555
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 145 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204
L A++ MG+N+ ++F+ +K+DG + R ++ E Q++GRAGR G +
Sbjct: 477 LFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 536
Query: 205 LDSEDLPLLHKSLLEPS 221
+D + P + K LL+ S
Sbjct: 537 VDEKMSPTIGKQLLKGS 553
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203
VL A++ +GLN+ ++F+ ++KFDG R ++ E Q++GRAGR G +
Sbjct: 546 VLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVIL 605
Query: 204 CLDSEDLPLLHKSLLE 219
+D + P + KS+L+
Sbjct: 606 MIDEKMDPPVAKSMLK 621
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
VL A++ +GLN+ ++F++++K+DG + R ++ E Q++GRAGR G
Sbjct: 498 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 548
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
+L A++ +GLN+ ++F+ +KF G R LT E Q++GRAGR G
Sbjct: 462 ILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRG 512
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 38/215 (17%)
Query: 9 DCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQS 67
+ +IDEI +G K RG + L+ NE + + A +P + +I ++ D +++
Sbjct: 124 ETLIIDEIHNIGDKERGKAIEN-LIAYAMNEGIRIVAMSATIPDVNKIAEII-DAEIIKT 181
Query: 68 YERLSPLVPLNVPLGSFSNIQTGDCI-------------------VTFSRHAIYRLKKAI 108
ER PL V +G+ + GD I T +R L
Sbjct: 182 DERPIPLYKA-VKIGNKLYFEDGDVIELKEDFIKKMVRKNKVVMIFTSTRKKAEELYMIY 240
Query: 109 ESRGKHLCSIVYGSLPPETRTR--QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 166
+ + ++ + + L ET+ R + TR +++++V++ A+ G+N ++F
Sbjct: 241 DRKFQNKVAFFHAGLDAETKLRLLEETR----QGKYNIIVSTTALSQGVNFPFYAVVFDD 296
Query: 167 MK-------KFDGVELRDLTVPEVKQIAGRAGRYG 194
+K +F G + +T E QI GRAGR G
Sbjct: 297 LKLPIIEYGRFTG--WKQITPIEFDQICGRAGRPG 329
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 87/245 (35%), Gaps = 66/245 (26%)
Query: 12 VIDEIQMLGCKTRG---FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 68
++DEI + RG S +L A E L G A VP +I + G + V+S
Sbjct: 144 IVDEIHSVSDPKRGPILESIVSRMLA-SAGEAQLVGLSATVPNAGEIAEWIGGKI-VESS 201
Query: 69 ERLSPL-------VPLNVPLGSFSNI-----------------QTGDCIV---------T 95
R PL L P G + G +V T
Sbjct: 202 WRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLDLAAEAIEDGGQALVFTYSRRRAVT 261
Query: 96 FSRHAIYRLKKAIESR-------------------GKHLCSIV-------YGSLPPETRT 129
++ A RL + + SR + L S++ + LPP R
Sbjct: 262 LAKRAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRK 321
Query: 130 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189
F + V+ ++ + G+NL R++ + +++ + V E KQ+AGR
Sbjct: 322 TVEEAFRAGA--VKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRVAEYKQMAGR 379
Query: 190 AGRYG 194
AGR G
Sbjct: 380 AGRPG 384
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 42 LCGDPAAVPLIQQI-LQVTGDDVKVQSYE--------RLSPL--VPLNVPLGSFSNIQTG 90
LC PA V Q + T + + VQ+ +LS L + L+ LG+ S ++G
Sbjct: 1578 LCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG 1637
Query: 91 -DCIVTFSRHAIY-RLKKAIESRGK-----HLCSIVY----GSLPPETRTRQATRFNDAS 139
+ +V R I+ +LK ++ HL S+ Y GS+PP R +RFN+
Sbjct: 1638 TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1697
Query: 140 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
S +L+ + G+GLNL + + + D +RDL Q RA R G K
Sbjct: 1698 SIDVLLLTTHVGGLGLNLTGADTV--VFVEHDWNPMRDL------QAMDRAHRIGQK 1746
>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella frigidimarina (strain
NCIMB 400) GN=rhlB PE=3 SV=1
Length = 434
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 91 DCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148
D + FS +H+ +L +E G H ++ G +P + R R +F S E DVLVA+
Sbjct: 257 DKAIVFSNTKHSCEKLWSYLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGEIDVLVAT 313
Query: 149 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
D GL+++ +++ +L D V +I GR GR G K
Sbjct: 314 DVAARGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGQK 353
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202
VL ++ + G+NL R+I + ++++ G ++ V E KQ+AGRAGR G P GE
Sbjct: 336 VLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLD-PYGEA 394
Query: 203 TCLDS 207
+ S
Sbjct: 395 IIIVS 399
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 113 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII--FSTMKKF 170
K +C I + L E +T+ T F +++ ++VA+ A GMG+N R++ + K
Sbjct: 265 KVVCGIYHAGLSNEHKTKTHTNF--INNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNI 322
Query: 171 DGVELRDLTVPEVKQIAGRAGRYGSK 196
+G Q GRAGR G K
Sbjct: 323 EGYY----------QEIGRAGRDGEK 338
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 147 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
A++ + +G+N+ ++ + KF+G + LT E Q+ GRAGR G
Sbjct: 369 ATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp28 PE=3 SV=1
Length = 662
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 48 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 107
AV ++Q +++ DD K + R+ ++ N FS I+ F LK+
Sbjct: 485 AVDRVEQRVEMISDDSK--KWRRVEEILESN----RFS-----PPIIIF-----VNLKRN 528
Query: 108 IESRGKHLCSI------VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NIS 160
IE+ K L +I ++GS E R R + + ++ D+LVA+D G G+++ N+S
Sbjct: 529 IEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTA--DILVATDIAGRGIDIPNVS 586
Query: 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209
++ M K ++ + GR GR G +T L ED
Sbjct: 587 LVLNYNMAK---------SIEDYTHRIGRTGRAGKSGTA--ITFLGPED 624
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 147 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
A++ + +G+N+ ++ + KF+G + LT E Q+ GRAGR G
Sbjct: 372 ATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRG 419
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 114 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 173
H S + L E R+ F + V+VA+ + G+NL +I + ++ +
Sbjct: 286 HGVSFHHAGLSNEQRSFIEKAFR--HRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDL 343
Query: 174 ELRDLTVPEVKQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLL-EPSPM 223
+ L+ EVKQ+ GRAGR G ++ +G + + ++ + + EP P+
Sbjct: 344 GITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPV 395
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 45 DPAAVPLIQQILQVTGDDVKV-----QSYERLSPLVPLNVPLGSFSNIQTGDCIV-TFSR 98
+P V L+ Q D + SY R S + PL + + G CIV T ++
Sbjct: 305 NPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT-----EHAKGGKCIVFTQTK 359
Query: 99 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL- 157
RL A+ K C ++G + R R F D F++LVA+D GL++
Sbjct: 360 RDADRLSYALARSFK--CEALHGDISQSQRERTLAGFRDG--HFNILVATDVAARGLDVP 415
Query: 158 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
N+ II EL + T V + GR GR G K
Sbjct: 416 NVDLIIH--------YELPNNTETFVHR-TGRTGRAGKK 445
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP--EVKQIAGRAGR 192
V+ + + GLNL R+I K+FD V + +P E KQ+AGRAGR
Sbjct: 337 VIACTPTLAAGLNLPARRVIIRDYKRFD-VNYGSVPIPVLEYKQMAGRAGR 386
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 142 FDVLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGRYGSKFPVG 200
V+V++ + G+NL R++ + ++FD + ++ V E +Q+AGRAGR G P G
Sbjct: 328 LKVVVSTTTLAAGVNLPARRVVVADYERFDPALGREEIPVLEYRQMAGRAGRPGLD-PYG 386
Query: 201 EVTCL 205
E +
Sbjct: 387 EAVLV 391
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194
V+ A++ + G+N+ + S++ K G E +L E+ Q+AGRAGR G
Sbjct: 524 VVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRG 574
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 39/227 (17%)
Query: 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLC---GDPAA------- 48
+ D VIDEI L + RG L+G A +++L G+P
Sbjct: 327 LKDIGTVVIDEIHSLNLEERGARLD-GLIGRLRFLFKEAQKIYLSATIGNPKELAKQLNA 385
Query: 49 ---------VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV-TFSR 98
VPL + I+ D K+ + + N+ + G C++ T+SR
Sbjct: 386 KLVLYNGRPVPLERHIIFCKNDFAKLNIIKEIVKREWQNISKFGYR----GQCLIFTYSR 441
Query: 99 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 158
L KA++S+G +G + R + F A+ + +V + A+ G++
Sbjct: 442 KRAEYLAKALKSKGIK-AEFYHGGMEYIKRRKVEDDF--ANQKIQCVVTTAALSAGVDFP 498
Query: 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205
S +I ++ G + L E +Q+ GRAGR G +G+V L
Sbjct: 499 ASTVILESLAM--GADW--LNPAEFQQMCGRAGRKGM-HEIGKVYLL 540
>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=uap56 PE=1 SV=3
Length = 434
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 119 VYGSLPPETRTRQATRFNDASSEFD--VLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 176
++G LP E R ++ F D FD + VA+D G G+++ I+ + +D +
Sbjct: 325 IHGGLPQEERIKRYKAFKD----FDKRICVATDVFGRGIDIERVNIVIN----YDMPDSP 376
Query: 177 DLTVPEVKQIAGRAGRYGSK 196
D + V GRAGR+G+K
Sbjct: 377 DSYLHRV----GRAGRFGTK 392
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGR 192
V+ ++ + GLNL R+I + ++FD ++ + V E KQ+AGRAGR
Sbjct: 332 VISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGR 381
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
I SR ++ + ++ G H + +GS+ PE R T++ + E +++ A+ A G
Sbjct: 678 IYCLSRMDCEKVSERLQEFG-HKAAFYHGSMEPEQRAFIQTQW--SKDEINIICATVAFG 734
Query: 153 MGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
MG+N ++ +I ++ K ++ Q GRAGR G +
Sbjct: 735 MGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDGQR 770
>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1
Length = 432
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + DVLVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGDLDVLVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain W3-18-1)
GN=rhlB PE=3 SV=1
Length = 439
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1
Length = 439
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 97 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 156
SR + R+ +++ ++G + G ET R+ + V+VA+ A GMG+N
Sbjct: 258 SRSKVERIAESLRNKGVSAQAYHAGL---ETSQREQVQRAFQRDNVQVVVATIAFGMGIN 314
Query: 157 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 216
+ R + FD ++ Q GRAGR P V + D LHK
Sbjct: 315 KSNVRFVV----HFD----LPRSIESYYQETGRAGR--DDLPAEAVLFYEPADYAWLHKI 364
Query: 217 LLE 219
LLE
Sbjct: 365 LLE 367
>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rhlB PE=3 SV=1
Length = 435
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F E D+LVA+D
Sbjct: 261 VFSNTKHSCENLWAHLEGDG-HRVGLLTGDVPQKKRIRILEQFT--KGELDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL+++ +++ +L D V +I GR GR G K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGQK 353
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 81 LGSFSNIQTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 138
L F Q G + + SR+ + R+ +++ ++G + G ET R+ + +
Sbjct: 230 LTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGM---ETAIRERVQQDFQ 286
Query: 139 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 198
V+VA+ A GMG+N + R + FD ++ Q GRAGR P
Sbjct: 287 RDNVQVVVATIAFGMGINKSNVRFV----AHFD----LPRSIESYYQETGRAGR--DDLP 336
Query: 199 VGEVTCLDSEDLPLLHKSLLE 219
V + D L K LLE
Sbjct: 337 AEAVLFYEPADYAWLQKILLE 357
>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP28 PE=3
SV=1
Length = 581
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 118 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRII-FSTMKKFDGVEL 175
+++GS + R + T F + SE VL+A+D G+++ N++ +I + +KKFD
Sbjct: 470 VIHGSKSQDMREQAITNFRNHESE--VLIATDVAARGIDIPNVTLVINYQMVKKFD---- 523
Query: 176 RDLTVPEVKQIAGRAGRYGS 195
E GR GR G+
Sbjct: 524 ------EYIHRIGRTGRAGN 537
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-- 201
VL A+ + G+NL R+I T F G R L + KQ+ GRAGR G VGE
Sbjct: 439 VLAATSTLSSGVNLPARRVIIRT-PIFGG---RPLDILTYKQMVGRAGRKGVD-TVGESI 493
Query: 202 VTCLDSED---LPLLHKSL 217
+ C +SE + LL SL
Sbjct: 494 LICKNSEKSKGIALLQGSL 512
>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain
OS195) GN=rhlB PE=3 SV=1
Length = 438
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCETLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL++ S + +L D V +I GR GR G+K
Sbjct: 318 RGLHI-------SDVSHVYNYDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain
OS185) GN=rhlB PE=3 SV=1
Length = 438
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCETLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL++ S + +L D V +I GR GR G+K
Sbjct: 318 RGLHI-------SDVSHVYNYDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=rhlB PE=3 SV=1
Length = 438
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCETLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 153 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196
GL++ S + +L D V +I GR GR G+K
Sbjct: 318 RGLHI-------SDVSHVYNYDLPDDCEDYVHRI-GRTGRAGNK 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,629,782
Number of Sequences: 539616
Number of extensions: 6523675
Number of successful extensions: 15507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 15411
Number of HSP's gapped (non-prelim): 117
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)