Query 015049
Match_columns 414
No_of_seqs 330 out of 2401
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 1.1E-90 2.3E-95 687.2 31.6 392 1-393 269-663 (700)
2 PRK01172 ski2-like helicase; P 99.9 1.2E-26 2.6E-31 250.1 20.1 223 4-229 132-400 (674)
3 PRK02362 ski2-like helicase; P 99.9 4.6E-27 9.9E-32 255.5 16.8 223 3-229 133-420 (737)
4 KOG0947 Cytoplasmic exosomal R 99.9 1.4E-27 3E-32 249.5 11.6 223 2-228 398-745 (1248)
5 KOG0948 Nuclear exosomal RNA h 99.9 1E-26 2.2E-31 238.0 8.6 222 4-229 232-561 (1041)
6 COG1204 Superfamily II helicas 99.9 1.6E-25 3.5E-30 240.6 14.5 219 4-225 143-427 (766)
7 KOG0331 ATP-dependent RNA heli 99.9 5.3E-25 1.1E-29 223.5 16.5 187 5-206 237-445 (519)
8 PRK00254 ski2-like helicase; P 99.9 1.2E-24 2.6E-29 236.0 20.1 220 3-227 134-408 (720)
9 COG0514 RecQ Superfamily II DN 99.9 9.2E-25 2E-29 225.4 17.8 198 6-219 130-348 (590)
10 TIGR00614 recQ_fam ATP-depende 99.9 2.6E-24 5.7E-29 222.8 18.9 198 5-219 125-344 (470)
11 PRK09751 putative ATP-dependen 99.9 3.9E-24 8.5E-29 240.6 21.6 259 4-282 121-461 (1490)
12 COG0513 SrmB Superfamily II DN 99.9 3.6E-24 7.8E-29 223.3 18.7 196 5-215 172-388 (513)
13 PRK13767 ATP-dependent helicas 99.9 1.1E-23 2.5E-28 231.9 22.4 262 4-283 169-475 (876)
14 COG1201 Lhr Lhr-like helicases 99.9 1.8E-24 3.8E-29 230.6 14.8 264 3-282 145-438 (814)
15 PLN03137 ATP-dependent DNA hel 99.9 4.1E-24 9E-29 232.4 17.5 195 6-218 580-797 (1195)
16 PRK10590 ATP-dependent RNA hel 99.9 1.7E-23 3.6E-28 216.0 21.2 192 5-211 147-355 (456)
17 PRK11057 ATP-dependent DNA hel 99.9 8.1E-24 1.8E-28 225.2 18.8 199 6-220 138-355 (607)
18 COG1202 Superfamily II helicas 99.9 1.3E-24 2.8E-29 217.7 10.2 196 4-208 335-552 (830)
19 PRK11776 ATP-dependent RNA hel 99.9 1.4E-23 3.1E-28 216.9 18.1 193 5-212 145-353 (460)
20 KOG0328 Predicted ATP-dependen 99.9 1.1E-23 2.5E-28 195.3 15.1 194 6-214 168-379 (400)
21 TIGR01389 recQ ATP-dependent D 99.9 2.8E-23 6E-28 220.9 18.5 198 6-219 126-342 (591)
22 PTZ00110 helicase; Provisional 99.9 2.6E-23 5.6E-28 218.6 17.8 191 5-210 275-486 (545)
23 PRK04837 ATP-dependent RNA hel 99.9 2.2E-23 4.7E-28 213.3 16.8 188 5-207 155-360 (423)
24 PRK01297 ATP-dependent RNA hel 99.9 1E-22 2.3E-27 211.2 22.1 189 4-208 234-441 (475)
25 PLN00206 DEAD-box ATP-dependen 99.9 4.7E-23 1E-27 215.7 19.4 188 5-207 268-473 (518)
26 COG4581 Superfamily II RNA hel 99.9 3E-23 6.4E-28 224.3 18.2 221 3-227 225-558 (1041)
27 PRK11192 ATP-dependent RNA hel 99.9 1E-22 2.2E-27 208.9 19.6 194 5-213 145-357 (434)
28 KOG0333 U5 snRNP-like RNA heli 99.9 5.7E-23 1.2E-27 204.2 16.7 188 5-207 394-622 (673)
29 PRK04537 ATP-dependent RNA hel 99.9 9E-23 1.9E-27 215.4 18.5 187 5-206 157-361 (572)
30 PTZ00424 helicase 45; Provisio 99.9 1.9E-22 4.2E-27 204.5 19.1 190 4-208 167-373 (401)
31 PRK11634 ATP-dependent RNA hel 99.9 1.4E-22 3.1E-27 215.5 18.8 186 5-205 147-348 (629)
32 KOG0330 ATP-dependent RNA heli 99.9 2.8E-23 6E-28 200.2 11.9 192 5-211 202-410 (476)
33 TIGR03817 DECH_helic helicase/ 99.9 9.5E-23 2.1E-27 220.7 14.9 188 4-207 154-384 (742)
34 KOG0326 ATP-dependent RNA heli 99.9 8.8E-23 1.9E-27 192.2 12.0 208 4-226 224-450 (459)
35 KOG0338 ATP-dependent RNA heli 99.9 2.6E-22 5.7E-27 198.8 14.8 221 5-242 325-568 (691)
36 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.1E-21 6.8E-26 209.5 22.5 271 3-290 109-419 (819)
37 KOG0952 DNA/RNA helicase MER3/ 99.9 7E-22 1.5E-26 209.2 13.5 218 4-226 235-508 (1230)
38 PRK11664 ATP-dependent RNA hel 99.9 2.3E-20 5.1E-25 202.9 21.4 269 3-289 112-421 (812)
39 KOG0332 ATP-dependent RNA heli 99.9 1.2E-20 2.6E-25 181.2 15.8 208 5-222 230-461 (477)
40 KOG0342 ATP-dependent RNA heli 99.9 7.8E-21 1.7E-25 188.1 14.9 200 5-218 228-447 (543)
41 KOG0340 ATP-dependent RNA heli 99.8 1.2E-20 2.7E-25 180.1 14.5 205 4-223 150-379 (442)
42 PHA02653 RNA helicase NPH-II; 99.8 4E-20 8.6E-25 196.7 18.9 196 3-208 287-513 (675)
43 KOG0345 ATP-dependent RNA heli 99.8 1.7E-20 3.7E-25 184.7 13.9 195 6-213 156-369 (567)
44 KOG0335 ATP-dependent RNA heli 99.8 2.7E-20 5.9E-25 186.5 13.7 188 5-207 224-442 (482)
45 KOG0951 RNA helicase BRR2, DEA 99.8 8.2E-21 1.8E-25 203.4 9.4 211 5-219 435-713 (1674)
46 KOG0343 RNA Helicase [RNA proc 99.8 5.9E-20 1.3E-24 183.7 14.1 213 6-231 214-445 (758)
47 KOG0351 ATP-dependent DNA heli 99.8 6.6E-20 1.4E-24 199.3 14.5 235 8-258 386-644 (941)
48 KOG0922 DEAH-box RNA helicase 99.8 1.4E-19 3E-24 185.5 15.3 267 1-287 157-471 (674)
49 KOG0950 DNA polymerase theta/e 99.8 1.7E-19 3.6E-24 190.5 14.8 213 6-226 340-629 (1008)
50 PRK11131 ATP-dependent RNA hel 99.8 2.4E-18 5.1E-23 191.4 22.1 273 3-289 182-498 (1294)
51 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2E-18 4.3E-23 192.5 21.5 270 3-288 175-488 (1283)
52 PRK10689 transcription-repair 99.8 1E-18 2.2E-23 195.7 19.2 185 5-208 720-918 (1147)
53 TIGR01587 cas3_core CRISPR-ass 99.8 1.1E-18 2.4E-23 174.6 17.1 106 89-207 222-334 (358)
54 KOG0336 ATP-dependent RNA heli 99.8 5.6E-19 1.2E-23 171.3 14.1 192 5-211 365-575 (629)
55 TIGR00580 mfd transcription-re 99.8 2.1E-18 4.5E-23 189.5 19.3 185 5-208 571-769 (926)
56 KOG0341 DEAD-box protein abstr 99.8 6.9E-19 1.5E-23 169.6 10.5 184 8-207 327-526 (610)
57 KOG0339 ATP-dependent RNA heli 99.8 2.4E-18 5.3E-23 170.7 13.2 188 5-207 368-573 (731)
58 KOG4284 DEAD box protein [Tran 99.8 1.6E-18 3.5E-23 176.0 10.3 187 6-207 166-377 (980)
59 TIGR00643 recG ATP-dependent D 99.8 1E-17 2.2E-22 179.3 16.9 95 99-206 467-563 (630)
60 KOG0344 ATP-dependent RNA heli 99.8 6.3E-18 1.4E-22 170.9 14.3 198 4-215 285-502 (593)
61 PRK10917 ATP-dependent DNA hel 99.8 1.1E-17 2.3E-22 180.4 16.4 184 5-207 381-587 (681)
62 KOG0352 ATP-dependent DNA heli 99.8 2.2E-18 4.7E-23 168.1 9.9 197 7-220 141-374 (641)
63 COG1643 HrpA HrpA-like helicas 99.7 2E-17 4.3E-22 178.1 17.1 282 2-298 157-479 (845)
64 KOG0923 mRNA splicing factor A 99.7 3.3E-17 7E-22 167.0 16.9 275 3-297 374-697 (902)
65 PF12513 SUV3_C: Mitochondrial 99.7 7.2E-18 1.6E-22 119.2 6.7 49 342-390 1-49 (49)
66 KOG0348 ATP-dependent RNA heli 99.7 6.1E-17 1.3E-21 161.8 14.0 197 5-214 285-560 (708)
67 KOG0327 Translation initiation 99.7 1.1E-16 2.4E-21 154.9 14.6 194 5-214 167-376 (397)
68 TIGR02621 cas3_GSU0051 CRISPR- 99.7 3.4E-16 7.3E-21 168.4 18.3 183 5-205 169-388 (844)
69 KOG0346 RNA helicase [RNA proc 99.7 6.8E-17 1.5E-21 158.3 11.7 184 4-205 167-406 (569)
70 KOG0924 mRNA splicing factor A 99.7 1.7E-16 3.7E-21 162.1 14.4 268 2-289 463-780 (1042)
71 PHA02558 uvsW UvsW helicase; P 99.7 5.7E-16 1.2E-20 161.8 16.5 105 90-206 345-452 (501)
72 PF00271 Helicase_C: Helicase 99.7 1.6E-16 3.4E-21 123.7 9.1 77 106-194 1-78 (78)
73 KOG0347 RNA helicase [RNA proc 99.7 7.1E-16 1.5E-20 154.7 12.2 113 88-215 462-577 (731)
74 KOG0350 DEAD-box ATP-dependent 99.6 1E-16 2.2E-21 159.2 5.4 116 91-220 430-552 (620)
75 KOG0353 ATP-dependent DNA heli 99.6 7.1E-16 1.5E-20 148.6 8.8 164 6-185 214-403 (695)
76 TIGR03158 cas3_cyano CRISPR-as 99.6 6.8E-15 1.5E-19 147.3 15.2 84 89-191 272-357 (357)
77 cd00079 HELICc Helicase superf 99.6 1.7E-14 3.8E-19 122.2 11.7 101 89-204 28-130 (131)
78 KOG0334 RNA helicase [RNA proc 99.6 1.2E-14 2.5E-19 155.7 13.0 187 6-207 514-718 (997)
79 KOG0337 ATP-dependent RNA heli 99.6 4.4E-15 9.4E-20 145.1 7.8 197 4-215 161-375 (529)
80 KOG0949 Predicted helicase, DE 99.5 4.6E-14 1E-18 149.2 13.2 101 115-226 964-1064(1330)
81 smart00490 HELICc helicase sup 99.5 3.7E-14 8E-19 110.1 8.9 80 103-194 2-82 (82)
82 PRK04914 ATP-dependent helicas 99.5 4E-14 8.6E-19 155.6 12.4 98 89-196 493-593 (956)
83 PRK12898 secA preprotein trans 99.5 6.6E-13 1.4E-17 140.2 18.3 100 91-207 475-584 (656)
84 TIGR00603 rad25 DNA repair hel 99.5 3E-13 6.4E-18 144.4 15.3 92 89-196 495-590 (732)
85 TIGR00631 uvrb excinuclease AB 99.5 2.6E-13 5.6E-18 145.0 13.4 108 91-209 444-553 (655)
86 KOG0925 mRNA splicing factor A 99.5 1.6E-12 3.4E-17 129.3 17.5 265 2-289 154-470 (699)
87 PRK14701 reverse gyrase; Provi 99.5 1.8E-13 3.9E-18 157.4 12.2 119 91-219 332-467 (1638)
88 KOG0349 Putative DEAD-box RNA 99.5 3.5E-13 7.5E-18 132.1 12.2 108 86-207 502-613 (725)
89 COG1200 RecG RecG-like helicas 99.5 6.4E-13 1.4E-17 138.1 14.3 98 99-209 492-591 (677)
90 PRK05298 excinuclease ABC subu 99.5 8.2E-13 1.8E-17 141.8 14.9 106 91-207 448-555 (652)
91 PRK09694 helicase Cas3; Provis 99.4 1.7E-12 3.6E-17 142.0 14.1 98 88-196 558-665 (878)
92 COG4098 comFA Superfamily II D 99.4 4.4E-12 9.6E-17 121.6 14.6 109 89-209 304-416 (441)
93 PRK09200 preprotein translocas 99.4 1.8E-12 3.8E-17 139.7 13.3 99 91-206 430-538 (790)
94 PRK09401 reverse gyrase; Revie 99.4 1.1E-12 2.3E-17 148.0 11.4 89 91-191 330-429 (1176)
95 TIGR03714 secA2 accessory Sec 99.4 1.6E-11 3.5E-16 131.3 17.9 97 91-205 426-533 (762)
96 KOG0926 DEAH-box RNA helicase 99.4 1.1E-12 2.4E-17 136.6 8.4 87 115-207 606-702 (1172)
97 COG1205 Distinct helicase fami 99.3 5.5E-12 1.2E-16 138.2 13.1 182 4-196 192-412 (851)
98 COG1197 Mfd Transcription-repa 99.3 1.8E-11 3.8E-16 133.9 15.6 180 6-208 715-912 (1139)
99 COG1111 MPH1 ERCC4-like helica 99.3 1.5E-11 3.2E-16 123.6 13.2 99 91-205 367-477 (542)
100 PRK13766 Hef nuclease; Provisi 99.3 1.8E-11 3.9E-16 134.6 14.0 95 89-195 365-469 (773)
101 COG1203 CRISPR-associated heli 99.3 1.7E-11 3.8E-16 133.3 13.1 188 8-209 339-550 (733)
102 TIGR00963 secA preprotein tran 99.3 1.4E-10 3E-15 123.7 18.3 94 89-196 404-507 (745)
103 TIGR00595 priA primosomal prot 99.3 1.2E-10 2.6E-15 121.5 16.4 101 101-209 271-383 (505)
104 TIGR01054 rgy reverse gyrase. 99.3 2.8E-11 6E-16 136.7 12.2 73 91-170 328-410 (1171)
105 PRK12906 secA preprotein trans 99.3 1.2E-10 2.6E-15 125.0 16.3 94 89-196 439-543 (796)
106 PRK12900 secA preprotein trans 99.2 3.3E-10 7.1E-15 122.8 16.3 97 92-205 601-707 (1025)
107 COG0556 UvrB Helicase subunit 99.2 4.6E-10 1E-14 113.3 15.0 117 91-218 448-566 (663)
108 PRK05580 primosome assembly pr 99.2 5.9E-10 1.3E-14 120.4 16.7 102 98-208 436-550 (679)
109 COG1061 SSL2 DNA or RNA helica 99.1 2.3E-10 5E-15 117.7 11.9 90 91-193 285-376 (442)
110 PRK11448 hsdR type I restricti 99.1 4E-09 8.6E-14 118.8 20.8 94 89-195 698-802 (1123)
111 KOG0920 ATP-dependent RNA heli 99.1 3.2E-09 6.9E-14 115.1 17.7 182 89-284 413-624 (924)
112 KOG0329 ATP-dependent RNA heli 99.0 2.8E-10 6.1E-15 105.3 2.9 51 145-207 302-353 (387)
113 KOG0354 DEAD-box like helicase 98.9 8.4E-09 1.8E-13 109.2 12.6 91 92-195 416-519 (746)
114 PRK12904 preprotein translocas 98.9 4E-08 8.8E-13 106.3 17.8 94 89-196 429-563 (830)
115 PRK13104 secA preprotein trans 98.9 3.5E-08 7.6E-13 107.0 16.5 67 88-159 442-510 (896)
116 PRK13107 preprotein translocas 98.8 6.2E-08 1.3E-12 105.0 15.7 100 88-202 447-586 (908)
117 PLN03142 Probable chromatin-re 98.7 1.8E-07 3.9E-12 104.1 12.6 106 89-205 486-595 (1033)
118 KOG4150 Predicted ATP-dependen 98.6 9.5E-08 2.1E-12 97.2 7.7 111 91-213 527-647 (1034)
119 KOG0951 RNA helicase BRR2, DEA 98.6 2.4E-07 5.1E-12 101.5 9.8 216 5-239 1251-1516(1674)
120 TIGR00348 hsdR type I site-spe 98.2 1.2E-05 2.7E-10 87.0 13.2 117 90-218 515-659 (667)
121 PRK12903 secA preprotein trans 98.0 0.00011 2.5E-09 79.6 15.1 95 88-196 424-529 (925)
122 COG1198 PriA Primosomal protei 98.0 0.00016 3.5E-09 78.0 16.1 101 115-219 508-614 (730)
123 COG4096 HsdR Type I site-speci 98.0 6.5E-05 1.4E-09 80.4 12.8 95 90-195 427-527 (875)
124 PRK12326 preprotein translocas 98.0 0.00033 7.1E-09 75.0 17.7 95 88-196 425-537 (764)
125 COG1110 Reverse gyrase [DNA re 98.0 4.1E-05 8.9E-10 83.3 10.8 81 82-170 329-418 (1187)
126 PRK12899 secA preprotein trans 97.8 0.00067 1.5E-08 74.5 16.0 94 89-196 567-671 (970)
127 KOG1000 Chromatin remodeling p 97.8 0.00018 3.8E-09 72.9 10.4 127 92-229 495-625 (689)
128 TIGR02562 cas3_yersinia CRISPR 97.7 0.0002 4.3E-09 79.2 10.2 91 95-196 763-882 (1110)
129 PRK12901 secA preprotein trans 97.6 0.00095 2.1E-08 73.7 14.5 95 88-196 626-731 (1112)
130 PRK13103 secA preprotein trans 97.6 0.0011 2.3E-08 72.8 14.1 99 89-202 448-586 (913)
131 KOG1123 RNA polymerase II tran 97.6 0.00038 8.2E-09 70.7 9.5 100 88-200 541-641 (776)
132 TIGR01407 dinG_rel DnaQ family 97.5 0.00042 9.1E-09 77.3 10.5 116 88-208 673-814 (850)
133 KOG0390 DNA repair protein, SN 97.4 0.0012 2.6E-08 71.3 11.5 99 97-205 603-703 (776)
134 KOG0385 Chromatin remodeling c 97.1 0.0031 6.8E-08 67.2 10.9 108 89-207 486-597 (971)
135 KOG0387 Transcription-coupled 97.1 0.0033 7.2E-08 67.2 10.1 99 88-196 544-646 (923)
136 KOG0384 Chromodomain-helicase 97.0 0.0036 7.9E-08 69.7 10.7 107 89-206 698-808 (1373)
137 KOG0392 SNF2 family DNA-depend 97.0 0.004 8.8E-08 69.3 10.1 95 92-196 1343-1442(1549)
138 PF13307 Helicase_C_2: Helicas 96.9 0.0016 3.4E-08 58.2 5.5 114 88-207 8-149 (167)
139 CHL00122 secA preprotein trans 96.8 0.071 1.5E-06 58.6 17.9 66 88-158 422-491 (870)
140 PRK08074 bifunctional ATP-depe 96.7 0.0066 1.4E-07 68.4 10.0 117 88-208 751-893 (928)
141 COG0553 HepA Superfamily II DN 96.5 0.014 3.1E-07 64.9 10.9 103 92-205 714-818 (866)
142 PF02399 Herpes_ori_bp: Origin 96.5 0.031 6.6E-07 60.8 12.8 97 86-196 278-379 (824)
143 COG1199 DinG Rad3-related DNA 96.5 0.016 3.6E-07 62.8 10.9 115 88-208 478-617 (654)
144 PRK07246 bifunctional ATP-depe 96.2 0.045 9.7E-07 60.9 12.1 113 88-208 646-783 (820)
145 PRK11747 dinG ATP-dependent DN 96.0 0.052 1.1E-06 59.4 11.5 112 89-208 534-674 (697)
146 KOG0389 SNF2 family DNA-depend 96.0 0.041 9E-07 59.1 9.8 112 88-209 775-889 (941)
147 TIGR03117 cas_csf4 CRISPR-asso 95.9 0.047 1E-06 58.7 10.3 118 88-208 469-616 (636)
148 PRK12902 secA preprotein trans 95.9 0.15 3.3E-06 56.3 14.1 65 89-158 438-506 (939)
149 smart00492 HELICc3 helicase su 95.7 0.089 1.9E-06 45.6 9.3 87 118-207 26-137 (141)
150 PF06862 DUF1253: Protein of u 95.3 0.78 1.7E-05 47.2 15.8 120 90-218 301-425 (442)
151 KOG0388 SNF2 family DNA-depend 95.0 0.088 1.9E-06 56.1 8.3 94 92-196 1047-1142(1185)
152 COG4889 Predicted helicase [Ge 94.4 0.13 2.7E-06 56.2 7.7 81 115-204 499-583 (1518)
153 cd00268 DEADc DEAD-box helicas 94.1 0.1 2.2E-06 47.4 5.8 53 5-57 141-193 (203)
154 smart00491 HELICc2 helicase su 94.1 0.44 9.4E-06 41.4 9.3 79 127-207 32-138 (142)
155 TIGR00604 rad3 DNA repair heli 94.0 0.2 4.4E-06 54.9 8.9 117 88-207 521-673 (705)
156 KOG0391 SNF2 family DNA-depend 94.0 0.53 1.1E-05 53.1 11.5 98 89-190 1275-1375(1958)
157 KOG1015 Transcription regulato 94.0 0.17 3.7E-06 55.7 7.6 80 116-205 1191-1273(1567)
158 KOG0386 Chromatin remodeling c 93.9 0.14 3.1E-06 56.4 7.1 95 92-196 729-826 (1157)
159 PF13871 Helicase_C_4: Helicas 93.3 0.16 3.5E-06 49.0 5.8 65 130-205 52-125 (278)
160 COG1110 Reverse gyrase [DNA re 92.6 0.31 6.6E-06 54.2 7.1 62 89-152 125-192 (1187)
161 KOG0921 Dosage compensation co 92.5 0.083 1.8E-06 57.6 2.7 78 116-195 677-764 (1282)
162 smart00487 DEXDc DEAD-like hel 92.1 0.34 7.4E-06 42.6 5.9 53 6-58 128-180 (201)
163 PRK05580 primosome assembly pr 91.1 1 2.2E-05 49.3 9.2 74 91-167 192-267 (679)
164 TIGR00595 priA primosomal prot 90.9 1 2.2E-05 47.5 8.7 74 91-167 27-102 (505)
165 PRK14873 primosome assembly pr 89.3 1.6 3.5E-05 47.5 8.8 73 130-215 463-545 (665)
166 KOG1002 Nucleotide excision re 89.2 2 4.3E-05 44.4 8.7 89 104-203 654-744 (791)
167 PRK10917 ATP-dependent DNA hel 88.9 1.4 3E-05 48.2 8.1 77 91-170 312-395 (681)
168 TIGR00643 recG ATP-dependent D 87.1 2.3 5.1E-05 46.1 8.4 77 91-170 286-369 (630)
169 KOG0952 DNA/RNA helicase MER3/ 86.8 0.12 2.5E-06 57.5 -1.7 72 4-76 1043-1122(1230)
170 KOG4439 RNA polymerase II tran 86.5 4 8.6E-05 44.0 9.3 80 107-196 765-846 (901)
171 PRK14873 primosome assembly pr 86.1 2.6 5.6E-05 46.0 8.0 74 90-166 189-265 (665)
172 COG0653 SecA Preprotein transl 85.3 1.7 3.7E-05 47.9 6.1 101 89-196 428-535 (822)
173 cd00046 DEXDc DEAD-like helica 84.5 1.1 2.4E-05 36.7 3.5 22 5-26 101-122 (144)
174 PRK14701 reverse gyrase; Provi 82.2 4.2 9.1E-05 48.7 8.2 76 91-168 124-210 (1638)
175 TIGR01054 rgy reverse gyrase. 81.5 3.4 7.4E-05 48.0 7.0 78 90-169 122-210 (1171)
176 PF00270 DEAD: DEAD/DEAH box h 80.5 0.72 1.6E-05 40.2 0.9 26 6-31 118-143 (169)
177 TIGR00580 mfd transcription-re 78.9 7.7 0.00017 44.0 8.5 77 91-170 502-585 (926)
178 PRK10689 transcription-repair 77.5 9.2 0.0002 44.4 8.7 78 91-170 651-734 (1147)
179 PRK06827 phosphoribosylpyropho 76.7 44 0.00096 33.9 12.4 110 40-152 210-330 (382)
180 KOG0331 ATP-dependent RNA heli 74.5 9.5 0.00021 40.1 7.1 94 92-192 168-272 (519)
181 COG1198 PriA Primosomal protei 73.7 5 0.00011 44.0 5.1 71 91-164 247-319 (730)
182 COG2812 DnaX DNA polymerase II 72.8 3.9 8.4E-05 43.1 3.8 42 2-47 114-157 (515)
183 TIGR00596 rad1 DNA repair prot 72.4 8.8 0.00019 42.8 6.7 22 89-110 295-317 (814)
184 PRK11776 ATP-dependent RNA hel 72.0 32 0.0007 35.5 10.6 71 92-168 75-157 (460)
185 KOG0347 RNA helicase [RNA proc 71.8 9.2 0.0002 40.3 6.2 53 92-150 267-322 (731)
186 COG0462 PrsA Phosphoribosylpyr 71.3 40 0.00086 33.2 10.2 105 42-154 168-279 (314)
187 TIGR00614 recQ_fam ATP-depende 70.2 17 0.00036 37.9 8.0 77 90-169 52-138 (470)
188 PF00176 SNF2_N: SNF2 family N 68.9 4.9 0.00011 38.3 3.5 38 7-46 134-172 (299)
189 TIGR01389 recQ ATP-dependent D 68.0 20 0.00043 38.5 8.2 77 89-168 53-137 (591)
190 PF07652 Flavi_DEAD: Flaviviru 67.4 3.3 7.1E-05 36.1 1.6 15 5-19 93-107 (148)
191 PRK11054 helD DNA helicase IV; 67.1 1.2E+02 0.0026 33.4 13.9 156 5-168 428-611 (684)
192 COG0513 SrmB Superfamily II DN 67.0 12 0.00026 39.6 6.1 91 92-192 102-204 (513)
193 PRK02269 ribose-phosphate pyro 67.0 79 0.0017 31.2 11.5 107 40-152 168-280 (320)
194 KOG1016 Predicted DNA helicase 65.5 7.6 0.00016 42.5 4.2 78 119-206 767-846 (1387)
195 PF01443 Viral_helicase1: Vira 65.4 7.8 0.00017 35.7 4.0 40 7-50 62-101 (234)
196 PRK00553 ribose-phosphate pyro 64.9 94 0.002 30.9 11.6 109 39-151 169-284 (332)
197 PF04796 RepA_C: Plasmid encod 63.8 5.6 0.00012 35.3 2.4 28 336-363 122-149 (161)
198 PRK11634 ATP-dependent RNA hel 61.3 30 0.00065 37.6 8.0 72 91-168 76-159 (629)
199 PRK11192 ATP-dependent RNA hel 57.1 1.3E+02 0.0029 30.6 11.7 72 91-168 75-157 (434)
200 PF13173 AAA_14: AAA domain 56.9 13 0.00028 31.1 3.4 41 7-49 61-101 (128)
201 COG1200 RecG RecG-like helicas 55.6 40 0.00087 36.6 7.5 76 92-170 315-396 (677)
202 KOG0329 ATP-dependent RNA heli 54.6 29 0.00063 33.2 5.6 87 95-191 117-214 (387)
203 KOG1133 Helicase of the DEAD s 54.0 68 0.0015 35.0 8.8 119 84-206 624-778 (821)
204 KOG0701 dsRNA-specific nucleas 54.0 4.5 9.8E-05 47.8 0.2 92 93-195 296-400 (1606)
205 PRK11057 ATP-dependent DNA hel 53.4 52 0.0011 35.5 8.2 77 89-168 65-149 (607)
206 KOG0330 ATP-dependent RNA heli 53.1 40 0.00086 34.2 6.5 67 93-165 134-211 (476)
207 COG1111 MPH1 ERCC4-like helica 53.0 20 0.00044 37.4 4.6 59 6-67 130-195 (542)
208 KOG2340 Uncharacterized conser 52.4 35 0.00076 36.0 6.2 94 93-195 557-653 (698)
209 PRK14964 DNA polymerase III su 51.2 25 0.00055 36.9 5.2 42 2-47 111-154 (491)
210 KOG0339 ATP-dependent RNA heli 51.0 49 0.0011 34.8 7.0 72 94-172 302-385 (731)
211 PRK04923 ribose-phosphate pyro 49.4 2.5E+02 0.0054 27.7 11.6 105 40-152 169-280 (319)
212 PRK09401 reverse gyrase; Revie 49.2 45 0.00098 39.0 7.2 77 89-168 123-211 (1176)
213 PRK07764 DNA polymerase III su 48.9 25 0.00054 39.4 5.0 18 3-20 116-133 (824)
214 PRK12898 secA preprotein trans 48.5 47 0.001 36.2 6.8 63 92-164 148-214 (656)
215 PRK04914 ATP-dependent helicas 48.5 17 0.00036 41.4 3.6 15 6-20 271-285 (956)
216 PLN03137 ATP-dependent DNA hel 48.4 66 0.0014 37.4 8.1 61 89-150 500-561 (1195)
217 PF09848 DUF2075: Uncharacteri 48.0 9.6 0.00021 38.0 1.5 18 4-21 80-97 (352)
218 KOG0389 SNF2 family DNA-depend 47.8 22 0.00047 39.2 4.0 43 6-50 523-566 (941)
219 cd00268 DEADc DEAD-box helicas 47.7 79 0.0017 28.1 7.4 73 91-169 71-154 (203)
220 PTZ00110 helicase; Provisional 46.8 60 0.0013 34.6 7.3 71 92-168 206-287 (545)
221 PRK14958 DNA polymerase III su 46.4 23 0.0005 37.4 4.0 18 3-20 115-132 (509)
222 PLN03142 Probable chromatin-re 45.9 24 0.00053 40.4 4.3 40 7-48 291-331 (1033)
223 COG0610 Type I site-specific r 45.8 54 0.0012 37.6 7.0 81 128-218 580-661 (962)
224 PF13604 AAA_30: AAA domain; P 45.7 26 0.00055 31.9 3.8 42 5-50 91-134 (196)
225 PRK07003 DNA polymerase III su 45.7 18 0.0004 39.9 3.2 18 4-21 116-133 (830)
226 TIGR03117 cas_csf4 CRISPR-asso 44.9 11 0.00023 41.0 1.3 19 3-21 202-220 (636)
227 PRK12323 DNA polymerase III su 44.8 24 0.00052 38.4 3.9 41 4-48 121-163 (700)
228 PRK14951 DNA polymerase III su 44.5 34 0.00073 37.1 5.0 18 3-20 120-137 (618)
229 PRK07199 phosphoribosylpyropho 42.4 3.4E+02 0.0073 26.5 11.7 107 39-152 162-274 (301)
230 PRK10590 ATP-dependent RNA hel 42.3 1E+02 0.0022 31.8 8.1 71 92-168 78-159 (456)
231 PRK14965 DNA polymerase III su 42.1 31 0.00067 37.1 4.3 18 3-20 115-132 (576)
232 PRK14952 DNA polymerase III su 41.8 50 0.0011 35.5 5.8 18 3-20 114-131 (584)
233 PRK05563 DNA polymerase III su 41.6 27 0.00059 37.4 3.7 18 3-20 115-132 (559)
234 COG0514 RecQ Superfamily II DN 40.6 80 0.0017 34.0 6.9 42 106-150 75-116 (590)
235 PRK04296 thymidine kinase; Pro 40.5 17 0.00036 32.9 1.7 15 6-20 77-91 (190)
236 smart00489 DEXDc3 DEAD-like he 40.2 11 0.00025 36.5 0.6 14 7-20 236-249 (289)
237 smart00488 DEXDc2 DEAD-like he 40.2 11 0.00025 36.5 0.6 14 7-20 236-249 (289)
238 PRK14956 DNA polymerase III su 38.7 28 0.00062 36.4 3.2 41 4-48 118-160 (484)
239 PF00270 DEAD: DEAD/DEAH box h 38.6 1.4E+02 0.003 25.4 7.3 73 91-169 46-130 (169)
240 PRK06645 DNA polymerase III su 38.4 55 0.0012 34.6 5.3 18 3-20 124-141 (507)
241 PHA03368 DNA packaging termina 37.7 41 0.00089 36.7 4.2 23 6-32 351-373 (738)
242 PF13401 AAA_22: AAA domain; P 37.6 24 0.00052 29.0 2.1 12 9-20 89-100 (131)
243 PRK14953 DNA polymerase III su 37.2 46 0.00099 35.0 4.5 18 3-20 115-132 (486)
244 KOG1513 Nuclear helicase MOP-3 36.5 31 0.00068 38.1 3.1 66 132-206 850-922 (1300)
245 PRK04537 ATP-dependent RNA hel 36.4 1.2E+02 0.0025 32.6 7.6 72 91-168 86-169 (572)
246 KOG0340 ATP-dependent RNA heli 36.4 69 0.0015 32.2 5.2 47 97-149 84-133 (442)
247 PRK14960 DNA polymerase III su 34.4 50 0.0011 36.1 4.3 18 4-21 115-132 (702)
248 TIGR01448 recD_rel helicase, p 33.5 43 0.00093 37.1 3.8 40 7-50 416-456 (720)
249 PRK11747 dinG ATP-dependent DN 33.2 19 0.00041 39.6 1.0 15 7-21 246-260 (697)
250 PRK08074 bifunctional ATP-depe 32.0 21 0.00045 40.7 1.1 18 4-21 452-469 (928)
251 PF00265 TK: Thymidine kinase; 31.9 31 0.00067 30.9 2.0 14 7-20 76-89 (176)
252 PHA02544 44 clamp loader, smal 31.6 67 0.0015 31.1 4.5 15 6-20 99-113 (316)
253 KOG0338 ATP-dependent RNA heli 31.4 1.4E+02 0.003 31.7 6.6 67 92-164 255-333 (691)
254 KOG0354 DEAD-box like helicase 31.2 38 0.00083 37.2 2.8 42 5-49 177-221 (746)
255 PRK04837 ATP-dependent RNA hel 29.7 1.7E+02 0.0037 29.8 7.3 72 91-168 85-167 (423)
256 PRK10536 hypothetical protein; 29.5 42 0.00091 32.2 2.5 37 9-49 178-215 (262)
257 PRK13104 secA preprotein trans 29.3 1.6E+02 0.0034 33.4 7.2 50 92-150 127-180 (896)
258 PF05621 TniB: Bacterial TniB 29.2 26 0.00055 34.4 1.0 29 7-35 145-175 (302)
259 KOG0337 ATP-dependent RNA heli 28.8 1.2E+02 0.0027 31.2 5.7 70 92-167 93-173 (529)
260 PTZ00145 phosphoribosylpyropho 28.7 6.8E+02 0.015 26.0 11.6 99 46-152 288-398 (439)
261 TIGR01407 dinG_rel DnaQ family 28.6 26 0.00056 39.5 1.1 18 4-21 437-454 (850)
262 PRK01297 ATP-dependent RNA hel 28.6 1.8E+02 0.0039 30.2 7.3 75 91-170 164-249 (475)
263 PF00580 UvrD-helicase: UvrD/R 28.5 49 0.0011 31.5 2.9 39 6-47 255-293 (315)
264 PF13872 AAA_34: P-loop contai 28.3 71 0.0015 31.3 3.9 14 9-22 174-187 (303)
265 PF10593 Z1: Z1 domain; Inter 28.2 1.2E+02 0.0025 28.7 5.2 68 104-187 103-173 (239)
266 PRK07994 DNA polymerase III su 28.1 53 0.0011 35.8 3.2 17 4-20 116-132 (647)
267 PRK02458 ribose-phosphate pyro 27.7 6.1E+02 0.013 25.1 11.4 103 41-152 173-281 (323)
268 PRK09111 DNA polymerase III su 27.5 86 0.0019 33.9 4.7 19 2-20 127-145 (598)
269 PRK07940 DNA polymerase III su 27.1 68 0.0015 32.7 3.7 18 3-20 113-130 (394)
270 PRK14959 DNA polymerase III su 27.0 70 0.0015 34.7 3.9 42 3-48 115-158 (624)
271 PRK14961 DNA polymerase III su 27.0 88 0.0019 31.4 4.5 18 3-20 115-132 (363)
272 PRK13766 Hef nuclease; Provisi 26.7 1.9E+02 0.0041 32.1 7.5 73 90-169 59-142 (773)
273 PF02562 PhoH: PhoH-like prote 26.2 68 0.0015 29.6 3.2 38 9-50 121-159 (205)
274 PRK14962 DNA polymerase III su 26.1 82 0.0018 33.0 4.2 18 3-20 113-130 (472)
275 PRK12899 secA preprotein trans 26.1 2E+02 0.0043 32.9 7.2 56 91-156 138-197 (970)
276 KOG1133 Helicase of the DEAD s 25.9 24 0.00052 38.3 0.2 14 9-22 350-363 (821)
277 PRK07133 DNA polymerase III su 25.4 84 0.0018 34.8 4.2 19 2-20 113-131 (725)
278 cd00561 CobA_CobO_BtuR ATP:cor 25.4 1.3E+02 0.0029 26.5 4.8 44 6-51 94-142 (159)
279 KOG0343 RNA Helicase [RNA proc 25.3 1.3E+02 0.0028 32.2 5.2 52 92-150 144-199 (758)
280 PRK06647 DNA polymerase III su 25.2 85 0.0018 33.7 4.2 41 3-47 115-157 (563)
281 PHA00350 putative assembly pro 25.1 1.6E+02 0.0035 30.1 5.9 16 7-22 81-96 (399)
282 PRK14969 DNA polymerase III su 25.1 71 0.0015 33.9 3.5 19 3-21 115-133 (527)
283 PRK14949 DNA polymerase III su 24.8 74 0.0016 36.1 3.7 41 5-49 117-159 (944)
284 PRK09751 putative ATP-dependen 24.8 1.8E+02 0.0039 35.0 7.0 75 91-172 39-138 (1490)
285 TIGR00678 holB DNA polymerase 24.7 90 0.0019 27.7 3.7 18 3-20 92-109 (188)
286 PRK07246 bifunctional ATP-depe 24.6 42 0.0009 37.7 1.8 17 5-21 434-450 (820)
287 COG0135 TrpF Phosphoribosylant 24.5 5.7E+02 0.012 23.7 9.1 103 39-149 3-109 (208)
288 PRK12904 preprotein translocas 24.3 2.2E+02 0.0048 32.1 7.2 55 92-156 126-184 (830)
289 PF13167 GTP-bdg_N: GTP-bindin 24.3 2.3E+02 0.0051 22.7 5.6 42 94-136 39-80 (95)
290 TIGR00963 secA preprotein tran 24.2 2.2E+02 0.0047 31.7 7.1 50 92-150 101-154 (745)
291 PRK13103 secA preprotein trans 24.1 2.1E+02 0.0045 32.5 6.9 51 92-151 127-181 (913)
292 cd01027 TOPRIM_RNase_M5_like T 23.8 3.4E+02 0.0074 20.8 6.3 56 91-154 3-58 (81)
293 PRK08451 DNA polymerase III su 23.7 86 0.0019 33.4 3.8 18 3-20 113-130 (535)
294 PRK04192 V-type ATP synthase s 23.5 9.6E+02 0.021 26.0 17.3 30 120-151 297-333 (586)
295 TIGR01447 recD exodeoxyribonuc 23.4 76 0.0017 34.2 3.4 38 7-48 259-297 (586)
296 COG4021 Uncharacterized conser 23.3 4E+02 0.0086 24.8 7.4 93 295-388 86-187 (249)
297 PLN03025 replication factor C 23.1 79 0.0017 31.0 3.3 15 6-20 98-112 (319)
298 PRK14950 DNA polymerase III su 23.1 97 0.0021 33.3 4.2 19 3-21 116-134 (585)
299 KOG2227 Pre-initiation complex 23.1 1.5E+02 0.0033 31.0 5.2 51 8-58 257-308 (529)
300 PHA00012 I assembly protein 23.0 1.4E+02 0.003 29.9 4.8 49 7-56 81-135 (361)
301 PRK14971 DNA polymerase III su 22.7 1E+02 0.0022 33.5 4.2 20 2-21 116-135 (614)
302 PRK14955 DNA polymerase III su 22.6 95 0.0021 31.6 3.8 20 2-21 122-141 (397)
303 PF05707 Zot: Zonular occluden 22.5 92 0.002 28.0 3.4 15 7-21 79-93 (193)
304 TIGR03817 DECH_helic helicase/ 22.3 2E+02 0.0043 32.0 6.4 91 90-189 82-186 (742)
305 PF03808 Glyco_tran_WecB: Glyc 22.0 3.6E+02 0.0078 23.8 7.0 55 90-146 48-106 (172)
306 PRK08691 DNA polymerase III su 21.9 88 0.0019 34.4 3.5 19 3-21 115-133 (709)
307 PF13177 DNA_pol3_delta2: DNA 21.7 1.1E+02 0.0025 26.7 3.7 18 3-20 98-115 (162)
308 PRK09200 preprotein translocas 21.5 2.6E+02 0.0057 31.3 7.1 50 92-150 123-177 (790)
309 TIGR01042 V-ATPase_V1_A V-type 21.5 1E+03 0.022 25.8 11.0 65 179-243 364-441 (591)
310 cd00009 AAA The AAA+ (ATPases 21.2 1E+02 0.0022 24.9 3.1 42 6-48 83-129 (151)
311 PF03354 Terminase_1: Phage Te 21.0 95 0.0021 32.4 3.5 16 7-22 123-138 (477)
312 PRK09112 DNA polymerase III su 20.9 1.1E+02 0.0023 30.7 3.7 17 4-20 138-154 (351)
313 KOG1001 Helicase-like transcri 20.6 24 0.00052 38.6 -1.1 91 104-205 555-646 (674)
314 PRK08084 DNA replication initi 20.5 54 0.0012 30.6 1.4 15 6-20 96-110 (235)
315 PRK08727 hypothetical protein; 20.5 63 0.0014 30.2 1.8 16 5-20 91-106 (233)
316 PLN00206 DEAD-box ATP-dependen 20.3 3.7E+02 0.0079 28.4 7.8 73 91-169 198-281 (518)
317 PTZ00293 thymidine kinase; Pro 20.1 53 0.0012 30.5 1.2 15 6-20 76-90 (211)
318 PRK06893 DNA replication initi 20.1 72 0.0016 29.6 2.2 16 5-20 89-104 (229)
319 KOG0391 SNF2 family DNA-depend 20.0 66 0.0014 37.3 2.1 43 6-49 736-778 (1958)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-90 Score=687.17 Aligned_cols=392 Identities=46% Similarity=0.782 Sum_probs=377.9
Q ss_pred CCCcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccc
Q 015049 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 80 (414)
Q Consensus 1 m~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~ 80 (414)
|.+..+.|+|+||||||||.|++|||+||++|+|+.|+++|+||+++++++++++++.+|++++|+.|+|++||.+....
T Consensus 269 M~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~ 348 (700)
T KOG0953|consen 269 MVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETA 348 (700)
T ss_pred EeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc
Q 015049 81 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160 (414)
Q Consensus 81 l~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~ 160 (414)
++.++++++|||||||||++++.++..+++.|.++|+++||+|||++|.+|+.+||+++++++|||||||+|||+|++|+
T Consensus 349 ~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~Ir 428 (700)
T KOG0953|consen 349 LGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIR 428 (700)
T ss_pred hhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccccee
Confidence 89999999999999999999999999999999988999999999999999999999988899999999999999999999
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHHH
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~ 240 (414)
||||++..||+|.+..+++.++++|++|||||+|.+++.|+||++..+|++.+++.++.+.+++..+++.|+.++++.|+
T Consensus 429 RiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl~pt~eqie~fa 508 (700)
T KOG0953|consen 429 RIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGLWPTDEQIELFA 508 (700)
T ss_pred EEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCCCCHHHHHHhhcccCCCCChHHHHHHHHHHHHHhhcC
Q 015049 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 320 (414)
Q Consensus 241 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
.+.|+.+++.+++.|...++.+..|++|+.+++.++|++|++++|++++||.||+||+|.++|.++..|.+||+.||++.
T Consensus 509 ~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~~~f~kfa~~~s~~~ 588 (700)
T KOG0953|consen 509 YHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVCSAFLKFARQYSQNE 588 (700)
T ss_pred HhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc---cCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015049 321 IVQLREI---FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQ 393 (414)
Q Consensus 321 ~~~~~~~---~~~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~~~~ 393 (414)
++++..+ +.+| ...|++..+|..||++|+++++|+|||+|||++|||.+.|++++..++++|.+.+.++.|.
T Consensus 589 ~l~~~~l~~~~~~p-~~~p~t~~~L~~LEs~h~il~lYmWlS~Rfpd~fpd~~~vrd~~~~ld~ii~egv~~~~k~ 663 (700)
T KOG0953|consen 589 PLTFLWLKFNLGWP-NKIPKTIYELEDLESLHDILDLYMWLSNRFPDMFPDAESVRDLKKELDEIIQEGVSKLTKL 663 (700)
T ss_pred cccHHHHHHhhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9885432 2222 2468899999999999999999999999999999999999999999999999999987665
No 2
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=1.2e-26 Score=250.15 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=171.0
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC--CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc---
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN--- 78 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~--a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~--- 78 (414)
++++++++||||+|+++|+.||..++.++..+. .....+++.+++.++.+++..|.+... +....|+.|+....
T Consensus 132 ~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~-~~~~~r~vpl~~~i~~~ 210 (674)
T PRK01172 132 IINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASL-IKSNFRPVPLKLGILYR 210 (674)
T ss_pred HHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCc-cCCCCCCCCeEEEEEec
Confidence 367899999999999999999999998765432 235667888888877888999887543 33444566554200
Q ss_pred -c--------c---c-ccccc-c-CCCCEEEEe-cHHHHHHHHHHHHHcC------------------------CCeEEE
Q 015049 79 -V--------P---L-GSFSN-I-QTGDCIVTF-SRHAIYRLKKAIESRG------------------------KHLCSI 118 (414)
Q Consensus 79 -~--------~---l-~~l~~-i-~~g~~Iv~f-sr~~~~~l~~~L~~~~------------------------~~~v~~ 118 (414)
. . + ..+.. . ..++++||+ ||+.++.++..|.+.. ..++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 211 KRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred CeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEE
Confidence 0 0 0 00111 1 246677766 9999999998886531 126899
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC-C
Q 015049 119 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-F 197 (414)
Q Consensus 119 ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~-~ 197 (414)
|||+|++++|..+++.|++| .++|||||+++++|+|+|..+||+.+.++|++...++++..+|.||+|||||.|.+ .
T Consensus 291 ~hagl~~~eR~~ve~~f~~g--~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNR--YIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcC--CCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 99999999999999999998 99999999999999999999999999999998888899999999999999999975 2
Q ss_pred CceEEEEecCCCHHHHHHhhCCCCcccccCCC
Q 015049 198 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 229 (414)
Q Consensus 198 ~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i 229 (414)
+.|++++...++...+++.+...++|+++.--
T Consensus 369 g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~ 400 (674)
T PRK01172 369 GIGYIYAASPASYDAAKKYLSGEPEPVISYMG 400 (674)
T ss_pred ceEEEEecCcccHHHHHHHHcCCCCceeecCC
Confidence 33555555555567788888888888776543
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=4.6e-27 Score=255.52 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=169.4
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCC--CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccc---
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL--- 77 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~--a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~--- 77 (414)
.++++++++||||+|+++|+.||..++..+..+. ...++++|.+++.++.++++.|++... +....|++|+...
T Consensus 133 ~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~ 211 (737)
T PRK02362 133 PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREGVFY 211 (737)
T ss_pred hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEec
Confidence 4567899999999999999999999998875553 345778888888888899999987543 2223344443210
Q ss_pred ------------------cccccccc-cc-CCCCEEEEe-cHHHHHHHHHHHHHcC------------------------
Q 015049 78 ------------------NVPLGSFS-NI-QTGDCIVTF-SRHAIYRLKKAIESRG------------------------ 112 (414)
Q Consensus 78 ------------------~~~l~~l~-~i-~~g~~Iv~f-sr~~~~~l~~~L~~~~------------------------ 112 (414)
...+..+. .+ ..+++|||+ ||+.|+.++..|....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (737)
T PRK02362 212 GGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSD 291 (737)
T ss_pred CCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccC
Confidence 00000111 11 346677766 9999999888776431
Q ss_pred -----------CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCc-ccccCCH
Q 015049 113 -----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLTV 180 (414)
Q Consensus 113 -----------~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~-~~~~ls~ 180 (414)
..++++|||+|++++|..+++.|++| .++|||||+++++|+|+|..+||+.+..+||+. +..|++.
T Consensus 292 ~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G--~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 292 TETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR--LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred ccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC--CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 12789999999999999999999998 999999999999999999999999998889865 4578999
Q ss_pred HHHHhhhcccCCCCCCCCceEEEEecCCC--HH-HHHHhhCCCCcccccCCC
Q 015049 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSED--LP-LLHKSLLEPSPMLESAGL 229 (414)
Q Consensus 181 ~~~~QraGRAGR~g~~~~~G~v~~~~~~d--~~-~l~~~l~~~~~~i~~~~i 229 (414)
.+|+||+|||||.|.+ +.|.++.+.... .. .+++++...++++++.-.
T Consensus 370 ~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~ 420 (737)
T PRK02362 370 LEYHQMAGRAGRPGLD-PYGEAVLLAKSYDELDELFERYIWADPEDVRSKLA 420 (737)
T ss_pred HHHHHHhhcCCCCCCC-CCceEEEEecCchhHHHHHHHHHhCCCCceeecCC
Confidence 9999999999999986 567777765543 33 456777777788776543
No 4
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.4e-27 Score=249.48 Aligned_cols=223 Identities=24% Similarity=0.371 Sum_probs=182.0
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCc----eEE-eeccccCCCcc
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD----VKV-QSYERLSPLVP 76 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~----~~v-~~~~r~~pl~~ 76 (414)
+++.+++++||+||+|.+.|.+||..|+.++.-+|. ++.++-.++++|+..+++.|.|.. +.| ...+|++||+.
T Consensus 398 adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~-HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh 476 (1248)
T KOG0947|consen 398 ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR-HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEH 476 (1248)
T ss_pred cchhhccceEEEeeeeecccccccccceeeeeeccc-cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEE
Confidence 467889999999999999999999999999998985 677777888899999999999764 444 44589999882
Q ss_pred c---cccc------------c-------ccc--------------------------ccCCC------------------
Q 015049 77 L---NVPL------------G-------SFS--------------------------NIQTG------------------ 90 (414)
Q Consensus 77 ~---~~~l------------~-------~l~--------------------------~i~~g------------------ 90 (414)
. .+.+ . .++ .-..|
T Consensus 477 ~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l 556 (1248)
T KOG0947|consen 477 YLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWL 556 (1248)
T ss_pred EEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHH
Confidence 0 0000 0 000 00011
Q ss_pred ---------C----EEEEecHHHHHHHHHHHHH--------------------------------------cCCCeEEEe
Q 015049 91 ---------D----CIVTFSRHAIYRLKKAIES--------------------------------------RGKHLCSIV 119 (414)
Q Consensus 91 ---------~----~Iv~fsr~~~~~l~~~L~~--------------------------------------~~~~~v~~i 119 (414)
. +++||||+.|++.+..|+. .-..++++|
T Consensus 557 ~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVH 636 (1248)
T KOG0947|consen 557 DLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVH 636 (1248)
T ss_pred HHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhh
Confidence 0 3457799999999888864 011278999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCc
Q 015049 120 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 199 (414)
Q Consensus 120 hg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~ 199 (414)
|||+-|-.++-++-.|..| -++||+||.+++||+|+|.+.|||.++.|+||...|.|.+.+|.|++|||||.|.+ ..
T Consensus 637 H~GlLPivKE~VE~LFqrG--lVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD-~t 713 (1248)
T KOG0947|consen 637 HGGLLPIVKEVVELLFQRG--LVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD-ET 713 (1248)
T ss_pred cccchHHHHHHHHHHHhcC--ceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC-cC
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999998 78
Q ss_pred eEEEEecCC---CHHHHHHhhCCCCcccccCC
Q 015049 200 GEVTCLDSE---DLPLLHKSLLEPSPMLESAG 228 (414)
Q Consensus 200 G~v~~~~~~---d~~~l~~~l~~~~~~i~~~~ 228 (414)
|+|+.+... +...+++++.+.+..+.++.
T Consensus 714 GTVii~~~~~vp~~a~l~~li~G~~~~L~SQF 745 (1248)
T KOG0947|consen 714 GTVIIMCKDSVPSAATLKRLIMGGPTRLESQF 745 (1248)
T ss_pred ceEEEEecCCCCCHHHHhhHhcCCCchhhhhh
Confidence 999888765 45678888888888777643
No 5
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1e-26 Score=238.04 Aligned_cols=222 Identities=22% Similarity=0.297 Sum_probs=181.3
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC-----CceEEeeccccCCCcccc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG-----DDVKVQSYERLSPLVPLN 78 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~-----~~~~v~~~~r~~pl~~~~ 78 (414)
..+.+.+||+||+|.|-|.+||-.|+.-+.-+| +.++.++.++++|+...++.|.. ..-.|....|++||....
T Consensus 232 vmrEVaWVIFDEIHYMRDkERGVVWEETIIllP-~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyi 310 (1041)
T KOG0948|consen 232 VMREVAWVIFDEIHYMRDKERGVVWEETIILLP-DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYI 310 (1041)
T ss_pred HhheeeeEEeeeehhccccccceeeeeeEEecc-ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeee
Confidence 457899999999999999999999999988776 47899999999999999999862 223456778999998321
Q ss_pred ccc------------------------ccc-------------cccC--------CC----------------C-E-EEE
Q 015049 79 VPL------------------------GSF-------------SNIQ--------TG----------------D-C-IVT 95 (414)
Q Consensus 79 ~~l------------------------~~l-------------~~i~--------~g----------------~-~-Iv~ 95 (414)
-+. ..+ ++.+ +| + + |++
T Consensus 311 fP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFS 390 (1041)
T KOG0948|consen 311 FPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFS 390 (1041)
T ss_pred ecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEE
Confidence 110 000 0000 11 1 3 446
Q ss_pred ecHHHHHHHHHHHHH--------------------------------------cCCCeEEEecCCCCHHHHHHHHHHhhC
Q 015049 96 FSRHAIYRLKKAIES--------------------------------------RGKHLCSIVYGSLPPETRTRQATRFND 137 (414)
Q Consensus 96 fsr~~~~~l~~~L~~--------------------------------------~~~~~v~~ihg~L~~e~R~~~~~~F~~ 137 (414)
|||++|+.+|-++.+ ....++++|||||-|-.++.++-.|.+
T Consensus 391 FSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqE 470 (1041)
T KOG0948|consen 391 FSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQE 470 (1041)
T ss_pred ecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhc
Confidence 699999998887754 012268899999999999999999999
Q ss_pred CCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCH--HHHHH
Q 015049 138 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLHK 215 (414)
Q Consensus 138 g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~--~~l~~ 215 (414)
| -+++|.||.+++||+|+|.++|||....||||...|.+|.-+|+|+.|||||.|.+ +.|+|+.+-++.+ ...+.
T Consensus 471 G--LvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D-drGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 471 G--LVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID-DRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred c--HHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCC-CCceEEEEecCcCCHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999998 8899998876644 56788
Q ss_pred hhCCCCcccccCCC
Q 015049 216 SLLEPSPMLESAGL 229 (414)
Q Consensus 216 ~l~~~~~~i~~~~i 229 (414)
++.+...++.++.-
T Consensus 548 m~kG~aD~LnSaFh 561 (1041)
T KOG0948|consen 548 MLKGSADPLNSAFH 561 (1041)
T ss_pred HhcCCCcchhhhhh
Confidence 99999988887644
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=240.63 Aligned_cols=219 Identities=24% Similarity=0.351 Sum_probs=167.0
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC--CcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcc-----
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----- 76 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a--~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~----- 76 (414)
|...++++||||+|++.|..||+.++.++..+.. ..+.++|.++++++..+++.|++.+.. ....|+.|+..
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~ 221 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYV 221 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccc
Confidence 5678999999999999999999999999877764 348999999999999999999987754 44444444431
Q ss_pred -c-------cc--c-------cc-cccccC-CCCEEEEe-cHHHHHHHHHHHHH---------------------c----
Q 015049 77 -L-------NV--P-------LG-SFSNIQ-TGDCIVTF-SRHAIYRLKKAIES---------------------R---- 111 (414)
Q Consensus 77 -~-------~~--~-------l~-~l~~i~-~g~~Iv~f-sr~~~~~l~~~L~~---------------------~---- 111 (414)
. .+ + +. .+..++ .|+++||. ||+.+...++.|.. .
T Consensus 222 ~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 301 (766)
T COG1204 222 GAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPET 301 (766)
T ss_pred eEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccc
Confidence 0 00 0 00 011223 44566666 99999999998873 0
Q ss_pred -----------CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccC-CcccccCC
Q 015049 112 -----------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLT 179 (414)
Q Consensus 112 -----------~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~d-g~~~~~ls 179 (414)
-..++++||+||+.++|..+++.|++| .++|||||++++.|+|+|.++||+.+...|+ ..+..+++
T Consensus 302 ~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g--~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 302 PTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG--KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC--CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECc
Confidence 012689999999999999999999999 9999999999999999999999999999999 44489999
Q ss_pred HHHHHhhhcccCCCCCC-CCceEEEEecCCCHH-HHHHhhCCCCcccc
Q 015049 180 VPEVKQIAGRAGRYGSK-FPVGEVTCLDSEDLP-LLHKSLLEPSPMLE 225 (414)
Q Consensus 180 ~~~~~QraGRAGR~g~~-~~~G~v~~~~~~d~~-~l~~~l~~~~~~i~ 225 (414)
+.+++||+|||||.|-+ ++.+++++...++.. ....+....++++.
T Consensus 380 ~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~ 427 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIE 427 (766)
T ss_pred hhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHH
Confidence 99999999999999987 233444443333333 33555566666543
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.3e-25 Score=223.45 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=146.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCC-CCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccc--cC---CCc--
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYER--LS---PLV-- 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l-~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r--~~---pl~-- 75 (414)
++++.++|+||||.|.|..+..+.+.++-.+ +....++..+++-...++.++... ++...+..... +. .+.
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qi 316 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQI 316 (519)
T ss_pred ccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhh
Confidence 4689999999999999999999999999999 445467777777777788887754 33333322211 10 010
Q ss_pred -----------ccccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCccc
Q 015049 76 -----------PLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 143 (414)
Q Consensus 76 -----------~~~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~ 143 (414)
.+...|..+..-..|.+|||+ |++.|.+++..|...+. ++.++||+.++++|..+++.|++| ++.
T Consensus 317 ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~sQ~eR~~~L~~FreG--~~~ 393 (519)
T KOG0331|consen 317 VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKSQSERDWVLKGFREG--KSP 393 (519)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccccHHHHHHHHHhcccC--Ccc
Confidence 011112222222456777766 99999999999998886 899999999999999999999999 899
Q ss_pred EEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 144 VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 144 VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
||||||++++|||+| |+.||+++.|. ++++|+||+||+||+|.. |..+++.
T Consensus 394 vLVATdVAaRGLDi~dV~lVInydfP~---------~vEdYVHRiGRTGRa~~~---G~A~tff 445 (519)
T KOG0331|consen 394 VLVATDVAARGLDVPDVDLVINYDFPN---------NVEDYVHRIGRTGRAGKK---GTAITFF 445 (519)
T ss_pred eEEEcccccccCCCccccEEEeCCCCC---------CHHHHHhhcCccccCCCC---ceEEEEE
Confidence 999999999999995 99999999998 999999999999999976 7665553
No 8
>PRK00254 ski2-like helicase; Provisional
Probab=99.93 E-value=1.2e-24 Score=236.01 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=163.5
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcc--ccc-
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP--LNV- 79 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~--~~~- 79 (414)
.++++++++||||+|++++.+||..++.++..+.. ...++|.+++.++.++++.|++... +....|++|+.. ...
T Consensus 134 ~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~-~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~ 211 (720)
T PRK00254 134 SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG-RAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKGVFYQG 211 (720)
T ss_pred hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc-CCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceeeEecCC
Confidence 35688999999999999999999999999887753 4677888888877899999987653 333445555521 000
Q ss_pred -------cc--------ccc-cccC-CCCEEEEe-cHHHHHHHHHHHHHc------------------------------
Q 015049 80 -------PL--------GSF-SNIQ-TGDCIVTF-SRHAIYRLKKAIESR------------------------------ 111 (414)
Q Consensus 80 -------~l--------~~l-~~i~-~g~~Iv~f-sr~~~~~l~~~L~~~------------------------------ 111 (414)
.. ..+ ..+. .+.+|||+ ||+.|+.++..|.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 212 FLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred eeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 00 000 1122 34566655 999998877666321
Q ss_pred --CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcc
Q 015049 112 --GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189 (414)
Q Consensus 112 --~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGR 189 (414)
-..++++|||+|++++|..+++.|++| .++|||||+++++|+|+|...||+.+...|++.+..+++..+|+||+||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~G--~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GR 369 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFREG--LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGR 369 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHCC--CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhc
Confidence 012699999999999999999999998 9999999999999999999999998888887666667789999999999
Q ss_pred cCCCCCCCCceEEEEecCC-C-HHHHHHhhCCCCcccccC
Q 015049 190 AGRYGSKFPVGEVTCLDSE-D-LPLLHKSLLEPSPMLESA 227 (414)
Q Consensus 190 AGR~g~~~~~G~v~~~~~~-d-~~~l~~~l~~~~~~i~~~ 227 (414)
|||.|.+ ..|.++.+... + ...+++++.+.++++.+.
T Consensus 370 AGR~~~d-~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~ 408 (720)
T PRK00254 370 AGRPKYD-EVGEAIIVATTEEPSKLMERYIFGKPEKLFSM 408 (720)
T ss_pred cCCCCcC-CCceEEEEecCcchHHHHHHHHhCCchhhhcc
Confidence 9999865 45766665433 3 245677777776665543
No 9
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=9.2e-25 Score=225.39 Aligned_cols=198 Identities=20% Similarity=0.261 Sum_probs=151.2
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhC-------CCCCcEEEEecCCChHHHHHHHHHcCC---ceEEeeccccCC-C
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLG-------ICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSP-L 74 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~-------l~a~~i~l~g~~~~~~~i~~l~~~~~~---~~~v~~~~r~~p-l 74 (414)
..+.++||||||+++ +||++|...+.. ++...+..+.++++.....++...++. ...+.+..|++= +
T Consensus 130 ~~i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~ 207 (590)
T COG0514 130 LPISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLAL 207 (590)
T ss_pred CCCceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhh
Confidence 467899999999998 999998877643 344456667777777777777776643 356667777641 1
Q ss_pred ccccc--cc---cccc---ccCCCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEE
Q 015049 75 VPLNV--PL---GSFS---NIQTGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 145 (414)
Q Consensus 75 ~~~~~--~l---~~l~---~i~~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VL 145 (414)
.+..+ +. ..+. ....+..|| |.||+.++.+++.|...|. +++.+||||+.++|..+.++|..+ +++|+
T Consensus 208 ~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~~~eR~~~q~~f~~~--~~~ii 284 (590)
T COG0514 208 KVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLSNEERERVQQAFLND--EIKVM 284 (590)
T ss_pred hhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCCHHHHHHHHHHHhcC--CCcEE
Confidence 11111 11 1122 122333455 6699999999999999988 999999999999999999999998 89999
Q ss_pred EEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCC
Q 015049 146 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 146 VaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~ 219 (414)
|||.|+|||||.| |+.|||++.|+ |+++|+|-+|||||.|.. .-.++.+.+.|....+..+..
T Consensus 285 VAT~AFGMGIdKpdVRfViH~~lP~---------s~EsYyQE~GRAGRDG~~--a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 285 VATNAFGMGIDKPDVRFVIHYDLPG---------SIESYYQETGRAGRDGLP--AEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEeccccCccCCCCceEEEEecCCC---------CHHHHHHHHhhccCCCCc--ceEEEeeccccHHHHHHHHHh
Confidence 9999999999996 99999999999 999999999999999975 344455666787655555544
No 10
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.6e-24 Score=222.77 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=140.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHh-------CCCCCcEEEEecCCChHHHHHHHHHcCC---ceEEeeccccCC-
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALL-------GICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSP- 73 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~-------~l~a~~i~l~g~~~~~~~i~~l~~~~~~---~~~v~~~~r~~p- 73 (414)
..+++++||||||+++ +||+.+...+. .++...+..+.++.+....+++...++- .+....+.|+.-
T Consensus 125 ~~~i~~iViDEaH~i~--~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~ 202 (470)
T TIGR00614 125 RKGITLIAVDEAHCIS--QWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLY 202 (470)
T ss_pred cCCcCEEEEeCCcccC--ccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcE
Confidence 4689999999999998 67766554432 2233344444444444444556665432 222333333321
Q ss_pred Cccccc-------ccccccccCCCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccE
Q 015049 74 LVPLNV-------PLGSFSNIQTGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 144 (414)
Q Consensus 74 l~~~~~-------~l~~l~~i~~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~V 144 (414)
+.+... .+..+....++.. || |.|++.++.++..|.+.|. .++.+||+|++++|..+++.|++| +++|
T Consensus 203 ~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~-~~~~~H~~l~~~eR~~i~~~F~~g--~~~v 279 (470)
T TIGR00614 203 YEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGI-AAGAYHAGLEISARDDVHHKFQRD--EIQV 279 (470)
T ss_pred EEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCC-CeeEeeCCCCHHHHHHHHHHHHcC--CCcE
Confidence 111111 1111221223433 55 4499999999999999887 899999999999999999999998 9999
Q ss_pred EEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEE-EEecCCCHHHHHHhhCC
Q 015049 145 LVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV-TCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 145 LVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v-~~~~~~d~~~l~~~l~~ 219 (414)
||||++++||||+| |+.||+++.|+ +..+|+||+|||||.|.. |.+ +.+.+.|...++..+..
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~---------s~~~y~Qr~GRaGR~G~~---~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPK---------SMESYYQESGRAGRDGLP---SECHLFYAPADINRLRRLLME 344 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCC---------CHHHHHhhhcCcCCCCCC---ceEEEEechhHHHHHHHHHhc
Confidence 99999999999997 99999999998 999999999999999976 444 44566777777776654
No 11
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=3.9e-24 Score=240.63 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=179.3
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC---CCcEEEEecCCChHHHHHHHHHcCC--ceEEee--ccccCCCcc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC---ANELHLCGDPAAVPLIQQILQVTGD--DVKVQS--YERLSPLVP 76 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~---a~~i~l~g~~~~~~~i~~l~~~~~~--~~~v~~--~~r~~pl~~ 76 (414)
.++++++|||||+|++.+.+||..+...+..+. ......+|.++++...+.++++++. .+.+.. ..+..++.+
T Consensus 121 ~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v 200 (1490)
T PRK09751 121 TLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRI 200 (1490)
T ss_pred hhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEE
Confidence 578999999999999999899999877764432 3456677888888778888888753 233321 112222211
Q ss_pred cc------c------------------c----c--cccccc-CCCCEEEEe-cHHHHHHHHHHHHHcCC-----------
Q 015049 77 LN------V------------------P----L--GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGK----------- 113 (414)
Q Consensus 77 ~~------~------------------~----l--~~l~~i-~~g~~Iv~f-sr~~~~~l~~~L~~~~~----------- 113 (414)
.. . . + ..+..+ ..+++|||+ ||+.|+.++..|.+...
T Consensus 201 ~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~ 280 (1490)
T PRK09751 201 VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAV 280 (1490)
T ss_pred EEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccc
Confidence 00 0 0 0 001111 245566655 99999999999875320
Q ss_pred ---------------------CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccC
Q 015049 114 ---------------------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD 171 (414)
Q Consensus 114 ---------------------~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~d 171 (414)
..+.+|||+|++++|..++++|++| ++++||||+++++|||++ ++.||+++.|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G--~LrvLVATssLELGIDIg~VDlVIq~gsP~-- 356 (1490)
T PRK09751 281 DAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSG--ELRCVVATSSLELGIDMGAVDLVIQVATPL-- 356 (1490)
T ss_pred hhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhC--CceEEEeCcHHHccCCcccCCEEEEeCCCC--
Confidence 1267899999999999999999998 999999999999999996 99999999988
Q ss_pred CcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHH----HHHHhhCCCCcccccCCCCCCHHHHHHHHhc-----
Q 015049 172 GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP----LLHKSLLEPSPMLESAGLFPNFDLIYMYSRL----- 242 (414)
Q Consensus 172 g~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~----~l~~~l~~~~~~i~~~~i~p~~~~l~~~~~~----- 242 (414)
++++|+||+|||||.....+.|.++..+..++- .++.++.+..+++. ++...++.++++
T Consensus 357 -------sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~-----~p~nplDVLaqqiva~a 424 (1490)
T PRK09751 357 -------SVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLT-----PPHNPLDVLAQQTVAAA 424 (1490)
T ss_pred -------CHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccC-----CCCChHHHHHHHHHHHH
Confidence 999999999999997543345666655544432 25667777766542 222223222222
Q ss_pred -CCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhcc
Q 015049 243 -HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 282 (414)
Q Consensus 243 -~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (414)
..+....++++ ......+|...+.+++..+.++|.+
T Consensus 425 ~~~~~~~d~l~~----~vrra~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 425 AMDALQVDEWYS----RVRRAAPWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred hcCCCCHHHHHH----HhhccCCcccCCHHHHHHHHHHHhc
Confidence 12334444444 4446778988899999999999876
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.6e-24 Score=223.30 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=150.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccC--C---Cc---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS--P---LV--- 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~--p---l~--- 75 (414)
+.+++++|+||||.|+|.++......++..++....+++.+++..+.+..+.... .+...+....... . +.
T Consensus 172 l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~ 251 (513)
T COG0513 172 LSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFY 251 (513)
T ss_pred hhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEE
Confidence 4679999999999999998888899999999986777766666666677777653 3333332221111 1 11
Q ss_pred --ccc-c-c---c-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE
Q 015049 76 --PLN-V-P---L-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 146 (414)
Q Consensus 76 --~~~-~-~---l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV 146 (414)
+.. . . + ..+.....+.+|||+ |++.++.++..|...|. +++.+||+|++++|.++++.|++| +++|||
T Consensus 252 ~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~q~~R~~~l~~F~~g--~~~vLV 328 (513)
T COG0513 252 LEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLPQEERDRALEKFKDG--ELRVLV 328 (513)
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCCHHHHHHHHHHHHcC--CCCEEE
Confidence 000 0 1 1 112233455677777 99999999999999997 999999999999999999999998 999999
Q ss_pred EcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC-C-CHHHHHH
Q 015049 147 ASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-E-DLPLLHK 215 (414)
Q Consensus 147 aTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~-~-d~~~l~~ 215 (414)
|||+++||||+| +.+||+++.|. +++.|+||+||+||+|.. |..+.+.. . +...+++
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~---------~~e~yvHRiGRTgRaG~~---G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPL---------DPEDYVHRIGRTGRAGRK---GVAISFVTEEEEVKKLKR 388 (513)
T ss_pred EechhhccCCccccceeEEccCCC---------CHHHheeccCccccCCCC---CeEEEEeCcHHHHHHHHH
Confidence 999999999996 99999999998 999999999999999976 76665543 3 5554433
No 13
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.92 E-value=1.1e-23 Score=231.86 Aligned_cols=262 Identities=16% Similarity=0.182 Sum_probs=177.3
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC---CCcEEEEecCCChHHHHHHHHHcCCc--------eEEee--ccc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC---ANELHLCGDPAAVPLIQQILQVTGDD--------VKVQS--YER 70 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~---a~~i~l~g~~~~~~~i~~l~~~~~~~--------~~v~~--~~r 70 (414)
.+++++++||||+|.+.++.||..+...+..+. ......+|.+++.+..+.++.+++.. +.+.. +.+
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k 248 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK 248 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc
Confidence 467899999999999999999998887754432 23456677777776667777765321 22211 111
Q ss_pred cCCCccc----------cc-----ccccccc-c-CCCCEEEEe-cHHHHHHHHHHHHHcC-----CCeEEEecCCCCHHH
Q 015049 71 LSPLVPL----------NV-----PLGSFSN-I-QTGDCIVTF-SRHAIYRLKKAIESRG-----KHLCSIVYGSLPPET 127 (414)
Q Consensus 71 ~~pl~~~----------~~-----~l~~l~~-i-~~g~~Iv~f-sr~~~~~l~~~L~~~~-----~~~v~~ihg~L~~e~ 127 (414)
..++... .. ....+.. + ..+++|||+ ||+.|+.++..|.+.. ..++++|||+|++++
T Consensus 249 ~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 249 PFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred cceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 1111100 00 0001111 1 234566655 9999999999998632 237999999999999
Q ss_pred HHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 128 R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
|..+++.|++| ++++||||+++++|||+| ++.||+++.|+ ++.+|+||+|||||.+...+.|.++..+
T Consensus 329 R~~ve~~fk~G--~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~---------sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 329 RLEVEEKLKRG--ELKVVVSSTSLELGIDIGYIDLVVLLGSPK---------SVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHHcC--CCeEEEECChHHhcCCCCCCcEEEEeCCCC---------CHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999998 899999999999999996 99999999988 9999999999999986544679999887
Q ss_pred CCCHHH----HHHhhCCCCcccccCCCCCCHHH----HHHHHhcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHH
Q 015049 207 SEDLPL----LHKSLLEPSPMLESAGLFPNFDL----IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 278 (414)
Q Consensus 207 ~~d~~~----l~~~l~~~~~~i~~~~i~p~~~~----l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (414)
..++-. ++.+..+..+++... .. +.+. +..++.. ...+..++++.+. ....|.-.+.+++.++.+
T Consensus 398 ~~~l~e~~~~~~~~~~~~ie~~~~~-~~-~~dvl~q~i~~~~~~-~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~ 470 (876)
T PRK13767 398 RDDLVECAVLLKKAREGKIDRVHIP-KN-PLDVLAQHIVGMAIE-RPWDIEEAYNIVR----RAYPYRDLSDEDFESVLR 470 (876)
T ss_pred chhHHHHHHHHHHHHhCCCCCCCCC-CC-cHHHHHHHHHHHHHc-CCCCHHHHHHHHh----ccCCcccCCHHHHHHHHH
Confidence 776532 344555555443211 11 1222 2222222 3445566655554 455677777888999999
Q ss_pred hhccC
Q 015049 279 VIDQL 283 (414)
Q Consensus 279 ~l~~~ 283 (414)
+|.+.
T Consensus 471 ~l~~~ 475 (876)
T PRK13767 471 YLAGD 475 (876)
T ss_pred HHhcc
Confidence 88764
No 14
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=230.58 Aligned_cols=264 Identities=18% Similarity=0.212 Sum_probs=197.3
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCC--CCcEEEEecCCChHHHHHHHHHcCC---ceEEeec--cccCCCc
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGD---DVKVQSY--ERLSPLV 75 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~--a~~i~l~g~~~~~~~i~~l~~~~~~---~~~v~~~--~r~~pl~ 75 (414)
..++++++|||||+|.+.+++||.++...+..|. +.++.-+|.++++...+.++++++. .+.+... .+...+.
T Consensus 145 ~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~ 224 (814)
T COG1201 145 ELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIK 224 (814)
T ss_pred HHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEE
Confidence 4678999999999999999999999998876654 2378889999999888888888633 3444322 2221111
Q ss_pred ccc------------c-cccc---ccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCC
Q 015049 76 PLN------------V-PLGS---FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS 139 (414)
Q Consensus 76 ~~~------------~-~l~~---l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~ 139 (414)
+.. . .+.. +.+-++...||++||..++.++..|.+.+...+.+|||+|+.+.|..++++|++|
T Consensus 225 v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G- 303 (814)
T COG1201 225 VISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG- 303 (814)
T ss_pred EEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-
Confidence 100 0 0011 1111232334455999999999999998855899999999999999999999999
Q ss_pred CcccEEEEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCH----HHHH
Q 015049 140 SEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL----PLLH 214 (414)
Q Consensus 140 ~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~----~~l~ 214 (414)
+++++|||+.++.|||+ .|+.||+++.|+ +++.++||+||+|+.....+.|++++.+.+|+ ...+
T Consensus 304 -~lravV~TSSLELGIDiG~vdlVIq~~SP~---------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~ 373 (814)
T COG1201 304 -ELKAVVATSSLELGIDIGDIDLVIQLGSPK---------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLAD 373 (814)
T ss_pred -CceEEEEccchhhccccCCceEEEEeCCcH---------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHH
Confidence 89999999999999999 699999999999 99999999999999887767899999886665 2346
Q ss_pred HhhCCCCcccccCCCCCCHHHHHHHHhcCCCchHHH--HHHHHHHhcccCCCccccCHHHHHHHHHhhcc
Q 015049 215 KSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG--ILEHFLENAKLSENYFFANCEEVLKVATVIDQ 282 (414)
Q Consensus 215 ~~l~~~~~~i~~~~i~p~~~~l~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (414)
.++.+..+. +.++...|+.+++++-+..+.. -.+.+++.....++|...+.+++..+++++.+
T Consensus 374 ~a~~g~le~-----~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 374 LALEGKLER-----IKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHhCCccc-----CCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 666666553 3344455666665543333322 23445555567788999999999999999988
No 15
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=4.1e-24 Score=232.35 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=141.1
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhC-------CCCCcEEEEecCCChHHHHHHHHHcCCc---eEEeeccccCCCc
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLG-------ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSPLV 75 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~-------l~a~~i~l~g~~~~~~~i~~l~~~~~~~---~~v~~~~r~~pl~ 75 (414)
..+.++||||||+++ +||+.+...+.. .+...+..+.++++....+++...++.. +......|+. +.
T Consensus 580 ~~LslIVIDEAHcVS--qWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN-L~ 656 (1195)
T PLN03137 580 GLLARFVIDEAHCVS--QWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN-LW 656 (1195)
T ss_pred cccceeccCcchhhh--hcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc-eE
Confidence 358899999999998 788776654322 3344555566666655555666655432 2233344432 11
Q ss_pred c--ccc---c---c-ccccccC-CCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccE
Q 015049 76 P--LNV---P---L-GSFSNIQ-TGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 144 (414)
Q Consensus 76 ~--~~~---~---l-~~l~~i~-~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~V 144 (414)
+ ... . + ..+.... .+..|| |.||++|+.++..|.+.|. +++.+||+|++++|..++++|.+| +++|
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs~eeR~~vqe~F~~G--ei~V 733 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMDPAQRAFVQKQWSKD--EINI 733 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCCHHHHHHHHHHHhcC--CCcE
Confidence 1 100 0 1 1111111 233455 5599999999999999998 899999999999999999999998 8999
Q ss_pred EEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHHhhC
Q 015049 145 LVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLL 218 (414)
Q Consensus 145 LVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~~l~ 218 (414)
||||+++|||||+| |+.||+++.|+ +.+.|+||+|||||.|.. |.++.+ ...|...++.++.
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPk---------SiEsYyQriGRAGRDG~~---g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDGQR---SSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCC---------CHHHHHhhhcccCCCCCC---ceEEEEecHHHHHHHHHHHh
Confidence 99999999999996 99999999999 999999999999999976 655544 5556666666664
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=1.7e-23 Score=216.04 Aligned_cols=192 Identities=17% Similarity=0.233 Sum_probs=140.9
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccCCCccc------
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLSPLVPL------ 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~pl~~~------ 77 (414)
+++++++||||||++.+..+...+...+..++.....++.+++..+.++.+.... .+...+....+.......
T Consensus 147 l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 226 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF 226 (456)
T ss_pred cccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE
Confidence 5789999999999999877777788888777766555555555555566666543 333333222221111100
Q ss_pred -c-----ccccc-ccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 78 -N-----VPLGS-FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 78 -~-----~~l~~-l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
. ..+.. +.......+|||+ |+..++.+++.|.+.+. .+..+||++++++|..+++.|++| +++||||||
T Consensus 227 ~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~g--~~~iLVaTd 303 (456)
T PRK10590 227 VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKSQGARTRALADFKSG--DIRVLVATD 303 (456)
T ss_pred cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHcC--CCcEEEEcc
Confidence 0 00111 1112234566665 99999999999998887 899999999999999999999998 899999999
Q ss_pred cccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHH
Q 015049 150 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLP 211 (414)
Q Consensus 150 al~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~ 211 (414)
++++|||+| |+.||+++.|. ++.+|+||+|||||.|.. |.++++ ..+|..
T Consensus 304 v~~rGiDip~v~~VI~~~~P~---------~~~~yvqR~GRaGR~g~~---G~ai~l~~~~d~~ 355 (456)
T PRK10590 304 IAARGLDIEELPHVVNYELPN---------VPEDYVHRIGRTGRAAAT---GEALSLVCVDEHK 355 (456)
T ss_pred HHhcCCCcccCCEEEEeCCCC---------CHHHhhhhccccccCCCC---eeEEEEecHHHHH
Confidence 999999996 99999999998 999999999999999976 555433 333433
No 17
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=8.1e-24 Score=225.17 Aligned_cols=199 Identities=20% Similarity=0.281 Sum_probs=140.2
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHH-------hCCCCCcEEEEecCCChHHHHHHHHHcCC--c-eEEeeccccCCC-
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRAL-------LGICANELHLCGDPAAVPLIQQILQVTGD--D-VKVQSYERLSPL- 74 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l-------~~l~a~~i~l~g~~~~~~~i~~l~~~~~~--~-~~v~~~~r~~pl- 74 (414)
.+++++||||||+++ +||..+...+ ...+...+..+.++.+......+...++. . ..+....|+...
T Consensus 138 ~~l~~iVIDEaH~i~--~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~ 215 (607)
T PRK11057 138 WNPALLAVDEAHCIS--QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRY 215 (607)
T ss_pred CCCCEEEEeCccccc--cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCccee
Confidence 368999999999998 6776544332 12233444445554444444455554432 2 233334443211
Q ss_pred cccc--cc----cccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 75 VPLN--VP----LGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 75 ~~~~--~~----l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.+.. .. +..+.....+..|||+ |+++|+.++..|.+.|. .+..+||+|++++|..+++.|++| +++||||
T Consensus 216 ~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~~~~R~~i~~~F~~g--~~~VLVa 292 (607)
T PRK11057 216 TLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLDNDVRADVQEAFQRD--DLQIVVA 292 (607)
T ss_pred eeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHHCC--CCCEEEE
Confidence 0100 11 1112222334556644 99999999999999987 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP 220 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~ 220 (414)
|++++||||+| |+.||+++.|+ +.++|+||+|||||.|.. .-.++.+.+.|...+++.+...
T Consensus 293 T~a~~~GIDip~V~~VI~~d~P~---------s~~~y~Qr~GRaGR~G~~--~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 293 TVAFGMGINKPNVRFVVHFDIPR---------NIESYYQETGRAGRDGLP--AEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred echhhccCCCCCcCEEEEeCCCC---------CHHHHHHHhhhccCCCCC--ceEEEEeCHHHHHHHHHHHhcC
Confidence 99999999996 99999999998 999999999999999975 2234556677877777776544
No 18
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=217.67 Aligned_cols=196 Identities=25% Similarity=0.285 Sum_probs=160.4
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC--CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccc--
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNV-- 79 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~--a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~-- 79 (414)
.+.++++|||||+|++.|.+||+-+.-.+..+. ...-.+++.++++.+-+.+++.+|..+. ....|++|++..--
T Consensus 335 ~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV-~y~~RPVplErHlvf~ 413 (830)
T COG1202 335 DLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLV-LYDERPVPLERHLVFA 413 (830)
T ss_pred cccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeE-eecCCCCChhHeeeee
Confidence 457899999999999999999999888876654 2344677888888888999999887644 34568898873110
Q ss_pred --------ccccc---------cccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCc
Q 015049 80 --------PLGSF---------SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 141 (414)
Q Consensus 80 --------~l~~l---------~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~ 141 (414)
.+..+ ..-.+|++|||- ||+.|+.++..|...|. +++.+|+|||..+|..++..|.++ +
T Consensus 414 ~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~-~a~pYHaGL~y~eRk~vE~~F~~q--~ 490 (830)
T COG1202 414 RNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGL-KAAPYHAGLPYKERKSVERAFAAQ--E 490 (830)
T ss_pred cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCc-ccccccCCCcHHHHHHHHHHHhcC--C
Confidence 00001 122378888866 99999999999999988 999999999999999999999998 9
Q ss_pred ccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 142 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 142 ~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+.++|+|.|++-|+|+|...|||-++-- +..++++.+|.||.|||||.+.+ +.|.|+.+...
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaM----G~~WLs~~EF~QM~GRAGRp~yH-drGkVyllvep 552 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAM----GIEWLSVREFQQMLGRAGRPDYH-DRGKVYLLVEP 552 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHc----ccccCCHHHHHHHhcccCCCCcc-cCceEEEEecC
Confidence 9999999999999999999999976542 34688999999999999999986 77999887543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=1.4e-23 Score=216.87 Aligned_cols=193 Identities=21% Similarity=0.229 Sum_probs=144.7
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccc--cCCCcc-----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYER--LSPLVP----- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r--~~pl~~----- 76 (414)
+++++++||||||.+.+..++..+...+..++.....++.+++..+.++.+.... .....+..... ...+..
T Consensus 145 l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 224 (460)
T PRK11776 145 LDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV 224 (460)
T ss_pred HHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe
Confidence 5679999999999999888888888888888876666666666666666666643 33333322111 111110
Q ss_pred c----cccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 77 L----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 77 ~----~~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
. ...+ ..+....++.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +++||||||+
T Consensus 225 ~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~~eR~~~l~~F~~g--~~~vLVaTdv 301 (460)
T PRK11776 225 SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQRDRDQVLVRFANR--SCSVLVATDV 301 (460)
T ss_pred CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEEecc
Confidence 0 0001 112233455677665 99999999999999987 899999999999999999999998 8999999999
Q ss_pred ccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec-CCCHHH
Q 015049 151 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLPL 212 (414)
Q Consensus 151 l~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~-~~d~~~ 212 (414)
+++|||+| ++.||+++.|. +..+|+||+|||||.|.. |.++++. ++|...
T Consensus 302 ~~rGiDi~~v~~VI~~d~p~---------~~~~yiqR~GRtGR~g~~---G~ai~l~~~~e~~~ 353 (460)
T PRK11776 302 AARGLDIKALEAVINYELAR---------DPEVHVHRIGRTGRAGSK---GLALSLVAPEEMQR 353 (460)
T ss_pred cccccchhcCCeEEEecCCC---------CHhHhhhhcccccCCCCc---ceEEEEEchhHHHH
Confidence 99999996 99999999998 999999999999999976 6665553 444433
No 20
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-23 Score=195.32 Aligned_cols=194 Identities=15% Similarity=0.213 Sum_probs=149.4
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCC-CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCc--------c
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV--------P 76 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~--------~ 76 (414)
+.++++|+||++.+++..++.+.-+.+..+| ..++.+++++-+.+..+-.-+.+.+++.+-...--.+++ +
T Consensus 168 r~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~v 247 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAV 247 (400)
T ss_pred cceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeee
Confidence 5789999999999998888888999999998 456666777666665555555566665443222222222 1
Q ss_pred ccc-----cc-ccccccCCCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 77 LNV-----PL-GSFSNIQTGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 77 ~~~-----~l-~~l~~i~~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
..+ .| ..+..+.-.++|+ |.||+.+..+.+.+++... .|...||+|++++|..+++.|+.| +-+||++||
T Consensus 248 e~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf-tVssmHGDm~qkERd~im~dFRsg--~SrvLitTD 324 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMEQKERDKIMNDFRSG--KSRVLITTD 324 (400)
T ss_pred chhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc-eeeeccCCcchhHHHHHHHHhhcC--CceEEEEec
Confidence 110 11 1123334456666 5599999999999998887 899999999999999999999999 779999999
Q ss_pred cccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC-CCHHHHH
Q 015049 150 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLH 214 (414)
Q Consensus 150 al~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~-~d~~~l~ 214 (414)
+.++|+|+| +..||+|++|. ..+.|+||+||+||+|.+ |.++.|.. +|+..++
T Consensus 325 VwaRGiDv~qVslviNYDLP~---------nre~YIHRIGRSGRFGRk---GvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPN---------NRELYIHRIGRSGRFGRK---GVAINFVKSDDLRILR 379 (400)
T ss_pred hhhccCCcceeEEEEecCCCc---------cHHHHhhhhccccccCCc---ceEEEEecHHHHHHHH
Confidence 999999997 99999999998 889999999999999987 88886644 4555543
No 21
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=2.8e-23 Score=220.94 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=143.0
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHh-------CCCCCcEEEEecCCChHHHHHHHHHcCC--c-eEEeeccccCCCc
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALL-------GICANELHLCGDPAAVPLIQQILQVTGD--D-VKVQSYERLSPLV 75 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~-------~l~a~~i~l~g~~~~~~~i~~l~~~~~~--~-~~v~~~~r~~pl~ 75 (414)
.+++++||||||+++ +||+.+...+. .++...+..+.++.+....+++..+++. . ..+....|+....
T Consensus 126 ~~l~~iViDEaH~i~--~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~ 203 (591)
T TIGR01389 126 IPIALVAVDEAHCVS--QWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRF 203 (591)
T ss_pred CCCCEEEEeCCcccc--cccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEE
Confidence 578999999999998 78877654432 2333445555555555555666766542 1 2333444443111
Q ss_pred -cc--c----cccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 76 -PL--N----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 76 -~~--~----~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
+. . ..+..+.....+.+|||+ ||+.++.+++.|...|. .+..+||+|++++|..+.+.|.+| +++||||
T Consensus 204 ~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~-~~~~~H~~l~~~~R~~i~~~F~~g--~~~vlVa 280 (591)
T TIGR01389 204 SVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGI-SALAYHAGLSNKVRAENQEDFLYD--DVKVMVA 280 (591)
T ss_pred EEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHcC--CCcEEEE
Confidence 00 0 011122222334556644 99999999999998887 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~ 219 (414)
|++++||||+| |+.||+++.|+ +.++|+|++|||||.|.. +.+ ++.+...|...++..+..
T Consensus 281 T~a~~~GID~p~v~~VI~~~~p~---------s~~~y~Q~~GRaGR~G~~-~~~-il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 281 TNAFGMGIDKPNVRFVIHYDMPG---------NLESYYQEAGRAGRDGLP-AEA-ILLYSPADIALLKRRIEQ 342 (591)
T ss_pred echhhccCcCCCCCEEEEcCCCC---------CHHHHhhhhccccCCCCC-ceE-EEecCHHHHHHHHHHHhc
Confidence 99999999997 99999999998 999999999999999965 223 345566677777766654
No 22
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=2.6e-23 Score=218.63 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=139.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-C-CceEEee--ccccC--CCc---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-G-DDVKVQS--YERLS--PLV--- 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~-~~~~v~~--~~r~~--pl~--- 75 (414)
+++++++||||||.+.|..+...+..++..++.....++.+++....++.++... . ....+.. ..... .+.
T Consensus 275 l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~ 354 (545)
T PTZ00110 275 LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEV 354 (545)
T ss_pred hhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEE
Confidence 5789999999999999887778888888777665555555555445556665543 2 2222211 11000 000
Q ss_pred -cccc-----cc-cccccc--CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEE
Q 015049 76 -PLNV-----PL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 145 (414)
Q Consensus 76 -~~~~-----~l-~~l~~i--~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VL 145 (414)
.... .+ ..+..+ ..+.+|||+ |++.|+.+++.|...+. .+..+||++++++|..+++.|++| +.+||
T Consensus 355 ~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~~~~eR~~il~~F~~G--~~~IL 431 (545)
T PTZ00110 355 FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDKKQEERTWVLNEFKTG--KSPIM 431 (545)
T ss_pred EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCCcHHHHHHHHHHHhcC--CCcEE
Confidence 0000 00 111122 344566666 99999999999998887 889999999999999999999998 89999
Q ss_pred EEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCH
Q 015049 146 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDL 210 (414)
Q Consensus 146 VaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~ 210 (414)
||||++++|||+| |+.||+++.|. +..+|+||+|||||.|.. |.++++ .+++.
T Consensus 432 VaTdv~~rGIDi~~v~~VI~~d~P~---------s~~~yvqRiGRtGR~G~~---G~ai~~~~~~~~ 486 (545)
T PTZ00110 432 IATDVASRGLDVKDVKYVINFDFPN---------QIEDYVHRIGRTGRAGAK---GASYTFLTPDKY 486 (545)
T ss_pred EEcchhhcCCCcccCCEEEEeCCCC---------CHHHHHHHhcccccCCCC---ceEEEEECcchH
Confidence 9999999999996 99999999998 999999999999999976 766655 44443
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=2.2e-23 Score=213.28 Aligned_cols=188 Identities=14% Similarity=0.192 Sum_probs=136.8
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCC--CcEEEEecCCChHHHHHHHH-HcCCceEEeec--cccC-CCc---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQ-VTGDDVKVQSY--ERLS-PLV--- 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a--~~i~l~g~~~~~~~i~~l~~-~~~~~~~v~~~--~r~~-pl~--- 75 (414)
+.+++++||||||++.|..+.......+..++. ....++.+++....+..+.. .+.+...+... .... .+.
T Consensus 155 l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~ 234 (423)
T PRK04837 155 LGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEEL 234 (423)
T ss_pred cccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEE
Confidence 467999999999999987777777777777764 23334444444444554443 33333222211 1110 010
Q ss_pred -ccc-----ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 76 -PLN-----VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 76 -~~~-----~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
... ..+ ..+.....+.+|||+ |+..|+.++..|...+. +++++||++++++|..+++.|++| +++||||
T Consensus 235 ~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~~~~R~~~l~~F~~g--~~~vLVa 311 (423)
T PRK04837 235 FYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVAQKKRLRILEEFTRG--DLDILVA 311 (423)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCChhHHHHHHHHHHcC--CCcEEEE
Confidence 000 001 111222345677766 99999999999998887 899999999999999999999998 9999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
||++++|||+| ++.||+++.|. +..+|+||+|||||.|.. |.++++..
T Consensus 312 Tdv~~rGiDip~v~~VI~~d~P~---------s~~~yiqR~GR~gR~G~~---G~ai~~~~ 360 (423)
T PRK04837 312 TDVAARGLHIPAVTHVFNYDLPD---------DCEDYVHRIGRTGRAGAS---GHSISLAC 360 (423)
T ss_pred echhhcCCCccccCEEEEeCCCC---------chhheEeccccccCCCCC---eeEEEEeC
Confidence 99999999996 99999999998 999999999999999976 77776644
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=1e-22 Score=211.24 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=133.6
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC---CcEEEEecCCChHHHHHHHH-HcCCceEEeeccccC--C-Cc-
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA---NELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLS--P-LV- 75 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a---~~i~l~g~~~~~~~i~~l~~-~~~~~~~v~~~~r~~--p-l~- 75 (414)
++++++++||||+|.+.+..+...+...+..++. .++.+++++.+ ..+..+.. +......+....... + +.
T Consensus 234 ~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 312 (475)
T PRK01297 234 HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLAKQWTTDPAIVEIEPENVASDTVEQ 312 (475)
T ss_pred ccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHHHHhccCCEEEEeccCcCCCCcccE
Confidence 4678999999999999876666667777766643 23333333333 33444443 333333222111110 0 00
Q ss_pred -c--cc-----cccc-cccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEE
Q 015049 76 -P--LN-----VPLG-SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 145 (414)
Q Consensus 76 -~--~~-----~~l~-~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VL 145 (414)
+ .. ..+. .+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|.++++.|++| +++||
T Consensus 313 ~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~Fr~G--~~~vL 389 (475)
T PRK01297 313 HVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVPQHKRIKTLEGFREG--KIRVL 389 (475)
T ss_pred EEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHhCC--CCcEE
Confidence 0 00 0011 11122234567766 99999999999998887 899999999999999999999998 99999
Q ss_pred EEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 146 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 146 VaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
||||++++|||+| ++.||+++.|. +..+|+||+|||||.|.+ |.++++..+
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~---------s~~~y~Qr~GRaGR~g~~---g~~i~~~~~ 441 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPE---------DPDDYVHRIGRTGRAGAS---GVSISFAGE 441 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCC---------CHHHHHHhhCccCCCCCC---ceEEEEecH
Confidence 9999999999996 99999999987 999999999999999986 666655443
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=4.7e-23 Score=215.70 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=134.1
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCc-eEEeec--cccCC-Ccc---c
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD-VKVQSY--ERLSP-LVP---L 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~-~~v~~~--~r~~p-l~~---~ 77 (414)
+++++++||||||.+.+.++.......+..++..++.+++ ++..+.++.++...... ..+... .+... +.. .
T Consensus 268 l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~S-ATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~ 346 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFS-ATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIW 346 (518)
T ss_pred chheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEE-eeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEe
Confidence 5789999999999999766666666677667655554444 34444566676655433 222211 11111 000 0
Q ss_pred -c------ccccccccc--CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 78 -N------VPLGSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 78 -~------~~l~~l~~i--~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ..+..+... ..+.+|||+ |+..++.++..|......++..+||++++++|..+++.|++| +++||||
T Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G--~~~ILVa 424 (518)
T PLN00206 347 VETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG--EVPVIVA 424 (518)
T ss_pred ccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC--CCCEEEE
Confidence 0 000111111 124566666 999999999999864333899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
||+++||||+| ++.||+++.|. +..+|+||+|||||.|.. |.++++..
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~---------s~~~yihRiGRaGR~g~~---G~ai~f~~ 473 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPN---------TIKEYIHQIGRASRMGEK---GTAIVFVN 473 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCC---------CHHHHHHhccccccCCCC---eEEEEEEc
Confidence 99999999995 99999999987 999999999999999975 76665543
No 26
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=3e-23 Score=224.27 Aligned_cols=221 Identities=21% Similarity=0.307 Sum_probs=175.6
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC-----CceEEeeccccCCCccc
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG-----DDVKVQSYERLSPLVPL 77 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~-----~~~~v~~~~r~~pl~~~ 77 (414)
.++..++.||+||+|.|+|.+||++|+..++-+|. .+.+++.++++++.+.+..|.+ +...|....|++||...
T Consensus 225 ~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~-~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~ 303 (1041)
T COG4581 225 ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD-HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHF 303 (1041)
T ss_pred ccccccceEEEEeeeeccccccchhHHHHHHhcCC-CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEE
Confidence 46788999999999999999999999999998875 6788888899999999999975 44667788899998721
Q ss_pred ---cccc-------c------------ccc----------c------------------cC-------------CC--CE
Q 015049 78 ---NVPL-------G------------SFS----------N------------------IQ-------------TG--DC 92 (414)
Q Consensus 78 ---~~~l-------~------------~l~----------~------------------i~-------------~g--~~ 92 (414)
...+ . .+. + .. .. .+
T Consensus 304 ~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I 383 (1041)
T COG4581 304 VYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAI 383 (1041)
T ss_pred EecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceE
Confidence 0000 0 000 0 00 00 13
Q ss_pred EEEecHHHHHHHHHHHHH----------------------------cCC------------CeEEEecCCCCHHHHHHHH
Q 015049 93 IVTFSRHAIYRLKKAIES----------------------------RGK------------HLCSIVYGSLPPETRTRQA 132 (414)
Q Consensus 93 Iv~fsr~~~~~l~~~L~~----------------------------~~~------------~~v~~ihg~L~~e~R~~~~ 132 (414)
+|+|||+.|+..+..+.. .+. .++++||+||-|..|..++
T Consensus 384 ~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE 463 (1041)
T COG4581 384 VFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVE 463 (1041)
T ss_pred EEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHH
Confidence 446799999987776642 111 2578999999999999999
Q ss_pred HHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC---C
Q 015049 133 TRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE---D 209 (414)
Q Consensus 133 ~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~---d 209 (414)
++|..| -++|++||.++++|+|+|+++||+.+..||||.+.+++++.+|.|++|||||.|.+ ..|.|++.... +
T Consensus 464 ~Lfq~G--LvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD-~~G~vI~~~~~~~~~ 540 (1041)
T COG4581 464 ELFQEG--LVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD-VLGTVIVIEPPFESE 540 (1041)
T ss_pred HHHhcc--ceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccc-ccceEEEecCCCCCC
Confidence 999999 99999999999999999999999999999999999999999999999999999998 77988877332 3
Q ss_pred HHHHHHhhCCCCcccccC
Q 015049 210 LPLLHKSLLEPSPMLESA 227 (414)
Q Consensus 210 ~~~l~~~l~~~~~~i~~~ 227 (414)
......+..+...++.++
T Consensus 541 ~~e~~~l~~~~~~~L~s~ 558 (1041)
T COG4581 541 PSEAAGLASGKLDPLRSQ 558 (1041)
T ss_pred hHHHHHhhcCCCccchhh
Confidence 455666666666666543
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=1e-22 Score=208.91 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=139.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEE-ecCCChHHHHHHHHHcCC-ceEEeecc--ccCC-Ccc---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGD-DVKVQSYE--RLSP-LVP--- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~-g~~~~~~~i~~l~~~~~~-~~~v~~~~--r~~p-l~~--- 76 (414)
.++++++||||||.+.+..++..+..+...++.....+. +++.+.+.+..+...... ...+.... +... +..
T Consensus 145 ~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 224 (434)
T PRK11192 145 CRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYY 224 (434)
T ss_pred cccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEE
Confidence 467899999999999988888888877776665443333 333333556777766532 23332211 1100 000
Q ss_pred -c------ccccc-cccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 -L------NVPLG-SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 -~------~~~l~-~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ...+. .+.....+.+|||+ |+..++.++..|...+. .+..+||++++++|..+++.|++| +++||||
T Consensus 225 ~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~~~~R~~~l~~f~~G--~~~vLVa 301 (434)
T PRK11192 225 RADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMVQAKRNEAIKRLTDG--RVNVLVA 301 (434)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHhCC--CCcEEEE
Confidence 0 00111 11222345567766 99999999999998887 899999999999999999999998 9999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHH
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLL 213 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l 213 (414)
||++++|||+| ++.||+++.|. +...|+||+|||||.|.. |.++++ ...|...+
T Consensus 302 Td~~~~GiDip~v~~VI~~d~p~---------s~~~yiqr~GR~gR~g~~---g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 302 TDVAARGIDIDDVSHVINFDMPR---------SADTYLHRIGRTGRAGRK---GTAISLVEAHDHLLL 357 (434)
T ss_pred ccccccCccCCCCCEEEEECCCC---------CHHHHhhcccccccCCCC---ceEEEEecHHHHHHH
Confidence 99999999996 99999999887 999999999999999976 555444 33444333
No 28
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.90 E-value=5.7e-23 Score=204.18 Aligned_cols=188 Identities=19% Similarity=0.261 Sum_probs=148.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCC-------------------------CcEEEEecCCChHHHHHHHHHc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-------------------------NELHLCGDPAAVPLIQQILQVT 59 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-------------------------~~i~l~g~~~~~~~i~~l~~~~ 59 (414)
+++..++|+|||+.+.|.++-......|..+|. ..++++.+.+..+.++.++...
T Consensus 394 l~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~y 473 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSY 473 (673)
T ss_pred hccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHH
Confidence 567889999999999999999999999877753 1467788888889999998854
Q ss_pred -CCc--eEEeeccccCCCcc-----ccc-----cc-ccccc-cCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 015049 60 -GDD--VKVQSYERLSPLVP-----LNV-----PL-GSFSN-IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 124 (414)
Q Consensus 60 -~~~--~~v~~~~r~~pl~~-----~~~-----~l-~~l~~-i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~ 124 (414)
.+. +.+....+++|..- ... .| ..+.+ ..+.-+||+++++.|+.+++.|++.|. +|..+||+-+
T Consensus 474 lr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 474 LRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred hhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCcc
Confidence 333 34444555555431 110 01 11111 122223334499999999999999997 9999999999
Q ss_pred HHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEE
Q 015049 125 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203 (414)
Q Consensus 125 ~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~ 203 (414)
+++|+..+..|++| ..+||||||++|+|||+| |..||+++..| +..+|.||+||+||+|+. |.++
T Consensus 553 qeQRe~aL~~fr~~--t~dIlVaTDvAgRGIDIpnVSlVinydmak---------sieDYtHRIGRTgRAGk~---Gtai 618 (673)
T KOG0333|consen 553 QEQRENALADFREG--TGDILVATDVAGRGIDIPNVSLVINYDMAK---------SIEDYTHRIGRTGRAGKS---GTAI 618 (673)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEecccccCCCCCccceeeecchhh---------hHHHHHHHhccccccccC---ceeE
Confidence 99999999999998 789999999999999996 99999999999 999999999999999986 7777
Q ss_pred EecC
Q 015049 204 CLDS 207 (414)
Q Consensus 204 ~~~~ 207 (414)
+|..
T Consensus 619 Sflt 622 (673)
T KOG0333|consen 619 SFLT 622 (673)
T ss_pred EEec
Confidence 6543
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=9e-23 Score=215.44 Aligned_cols=187 Identities=16% Similarity=0.261 Sum_probs=132.6
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCC---CcEEEEecCCChHHHHHHHHHcCCceEEe-eccccCCCcc----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA---NELHLCGDPAAVPLIQQILQVTGDDVKVQ-SYERLSPLVP---- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a---~~i~l~g~~~~~~~i~~l~~~~~~~~~v~-~~~r~~pl~~---- 76 (414)
+..++++||||||++.|..+......++..++. .++.+++++.+..........+.....+. .......-..
T Consensus 157 l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~ 236 (572)
T PRK04537 157 LHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRI 236 (572)
T ss_pred hhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEE
Confidence 457889999999999987777777777776764 23444444433333333333333322221 1111110000
Q ss_pred -c-------ccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 -L-------NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 -~-------~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ...+..+.......+|||+ |++.++.+++.|.+.+. .+.++||+|++++|..+++.|++| +++||||
T Consensus 237 ~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~~~eR~~il~~Fr~G--~~~VLVa 313 (572)
T PRK04537 237 YFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVPQKKRESLLNRFQKG--QLEILVA 313 (572)
T ss_pred EecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEE
Confidence 0 0000112222344567666 99999999999999887 899999999999999999999998 9999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
||++++|||+| |+.||+++.|. +..+|+||+|||||.|.. |.++++.
T Consensus 314 Tdv~arGIDip~V~~VInyd~P~---------s~~~yvqRiGRaGR~G~~---G~ai~~~ 361 (572)
T PRK04537 314 TDVAARGLHIDGVKYVYNYDLPF---------DAEDYVHRIGRTARLGEE---GDAISFA 361 (572)
T ss_pred ehhhhcCCCccCCCEEEEcCCCC---------CHHHHhhhhcccccCCCC---ceEEEEe
Confidence 99999999996 99999999887 999999999999999986 6655543
No 30
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=1.9e-22 Score=204.53 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=132.4
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH-HcCCceEEeeccccCCCcc------
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLSPLVP------ 76 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~-~~~~~~~v~~~~r~~pl~~------ 76 (414)
.+++++++||||+|++.+..++..+...+..++.....++.+++..+.+..+.. .......+........+..
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYV 246 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEE
Confidence 367899999999999987666666777777776433333333333333333333 2222222211111100100
Q ss_pred -cc------ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 -LN------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 -~~------~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.. ..+ ..+.....+.+|||+ |++.++.+++.|...+. .+.++||++++++|..+++.|++| +++||||
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~R~~i~~~f~~g--~~~vLva 323 (401)
T PTZ00424 247 AVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMDQKDRDLIMREFRSG--STRVLIT 323 (401)
T ss_pred ecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEE
Confidence 00 000 111222334556655 99999999999998877 899999999999999999999998 9999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
|+++++|+|+| ++.||+++.|. +..+|+||+|||||.|.. |.++.+...
T Consensus 324 T~~l~~GiDip~v~~VI~~~~p~---------s~~~y~qr~GRagR~g~~---G~~i~l~~~ 373 (401)
T PTZ00424 324 TDLLARGIDVQQVSLVINYDLPA---------SPENYIHRIGRSGRFGRK---GVAINFVTP 373 (401)
T ss_pred cccccCCcCcccCCEEEEECCCC---------CHHHEeecccccccCCCC---ceEEEEEcH
Confidence 99999999996 99999999887 999999999999999976 766665443
No 31
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=1.4e-22 Score=215.46 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=138.7
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeecccc--CC-Ccc----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERL--SP-LVP---- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~--~p-l~~---- 76 (414)
+++++++||||||++.+..+...+..++..++.....++.+++..+.+..+.... .+...+...... .+ +..
T Consensus 147 l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 147 LSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred hhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE
Confidence 5689999999999999777777888888888876655666666555666666543 333333211111 11 000
Q ss_pred -c----cccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 77 -L----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 77 -~----~~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
. ...+ ..+.......+|||+ |+..+..+++.|.+.+. .+..+||+|++++|..+++.|++| +++||||||
T Consensus 227 v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~-~~~~lhgd~~q~~R~~il~~Fr~G--~~~ILVATd 303 (629)
T PRK11634 227 VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDMNQALREQTLERLKDG--RLDILIATD 303 (629)
T ss_pred echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC-CEEEeeCCCCHHHHHHHHHHHhCC--CCCEEEEcc
Confidence 0 0011 111222234566655 99999999999999987 899999999999999999999998 999999999
Q ss_pred cccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 150 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 150 al~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
++++|||+| |+.||+++.|. ++.+|+||+|||||.|.. |.++++
T Consensus 304 v~arGIDip~V~~VI~~d~P~---------~~e~yvqRiGRtGRaGr~---G~ai~~ 348 (629)
T PRK11634 304 VAARGLDVERISLVVNYDIPM---------DSESYVHRIGRTGRAGRA---GRALLF 348 (629)
T ss_pred hHhcCCCcccCCEEEEeCCCC---------CHHHHHHHhccccCCCCc---ceEEEE
Confidence 999999996 99999999987 999999999999999976 555544
No 32
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=200.17 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=149.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccC-----------
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS----------- 72 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~----------- 72 (414)
+++++++|+||||.+.|++++..+..+|..+|....++..+++....+.++.... .+...+.......
T Consensus 202 le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 202 LEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLF 281 (476)
T ss_pred HHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEe
Confidence 4578899999999999999999999999999988888888877777787777543 3334443222111
Q ss_pred -CCccccccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 73 -PLVPLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 73 -pl~~~~~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
|-......| ..++....+..|||. |...+..++-.|+..|. .+..+||.|+++.|...++.|++| ..+||||||
T Consensus 282 v~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqmsq~~Rlg~l~~Fk~~--~r~iLv~TD 358 (476)
T KOG0330|consen 282 VPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQMSQSKRLGALNKFKAG--ARSILVCTD 358 (476)
T ss_pred ccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCc-ceecccchhhHHHHHHHHHHHhcc--CCcEEEecc
Confidence 111111111 122333345556655 88999999999999998 888999999999999999999998 899999999
Q ss_pred cccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC-CCHH
Q 015049 150 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLP 211 (414)
Q Consensus 150 al~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~-~d~~ 211 (414)
++++|+|+| ++.||+++.|. +..+|+||+||+||.|.. |.++++.. .|+.
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~---------~skDYIHRvGRtaRaGrs---G~~ItlVtqyDve 410 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPT---------HSKDYIHRVGRTARAGRS---GKAITLVTQYDVE 410 (476)
T ss_pred hhcccCCCCCceEEEecCCCC---------cHHHHHHHcccccccCCC---cceEEEEehhhhH
Confidence 999999997 99999999998 999999999999999976 76665533 3443
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=9.5e-23 Score=220.67 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=128.5
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC-------CCCcEEEEecCCChHHHHHHHHHcCCceEEee-ccccCC-C
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-------CANELHLCGDPAAVPLIQQILQVTGDDVKVQS-YERLSP-L 74 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l-------~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~-~~r~~p-l 74 (414)
++++++++||||+|.+.+ .+|..+...+..+ ......++.+++..+..+.....++..+.+.. ...+.+ .
T Consensus 154 ~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~ 232 (742)
T TIGR03817 154 FLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGAR 232 (742)
T ss_pred HHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCce
Confidence 367899999999999975 5887766655433 22223333333332223333344555443321 111110 0
Q ss_pred c--ccc--------------------ccccccccc--CCCCEEEEe-cHHHHHHHHHHHHHc--------CCCeEEEecC
Q 015049 75 V--PLN--------------------VPLGSFSNI--QTGDCIVTF-SRHAIYRLKKAIESR--------GKHLCSIVYG 121 (414)
Q Consensus 75 ~--~~~--------------------~~l~~l~~i--~~g~~Iv~f-sr~~~~~l~~~L~~~--------~~~~v~~ihg 121 (414)
. ... .....+..+ ....+|||+ ||+.++.++..|.+. +. ++..+||
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~-~v~~~hg 311 (742)
T TIGR03817 233 TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAE-RVAAYRA 311 (742)
T ss_pred EEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcccccc-chhheec
Confidence 0 000 000011111 234566666 999999999988753 33 7889999
Q ss_pred CCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCce
Q 015049 122 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 200 (414)
Q Consensus 122 ~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G 200 (414)
++++++|..++++|++| ++++|||||++++|||+| ++.||+++.|. +.++|+||+|||||.|.. |
T Consensus 312 g~~~~eR~~ie~~f~~G--~i~vLVaTd~lerGIDI~~vd~VI~~~~P~---------s~~~y~qRiGRaGR~G~~---g 377 (742)
T TIGR03817 312 GYLPEDRRELERALRDG--ELLGVATTNALELGVDISGLDAVVIAGFPG---------TRASLWQQAGRAGRRGQG---A 377 (742)
T ss_pred CCCHHHHHHHHHHHHcC--CceEEEECchHhccCCcccccEEEEeCCCC---------CHHHHHHhccccCCCCCC---c
Confidence 99999999999999998 999999999999999996 99999999998 999999999999999976 6
Q ss_pred EEEEecC
Q 015049 201 EVTCLDS 207 (414)
Q Consensus 201 ~v~~~~~ 207 (414)
.++.+..
T Consensus 378 ~ai~v~~ 384 (742)
T TIGR03817 378 LVVLVAR 384 (742)
T ss_pred EEEEEeC
Confidence 6666543
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=8.8e-23 Score=192.22 Aligned_cols=208 Identities=20% Similarity=0.191 Sum_probs=162.9
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH-HcCCceEEeeccccCCCccc-----
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLSPLVPL----- 77 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~-~~~~~~~v~~~~r~~pl~~~----- 77 (414)
.+++..++|+||||.+.+.+++...+.++..+|.....+..+++-.-.++.+.. .+..+++++-.+.+++..+.
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheee
Confidence 356788999999999999999999999999999765555444443334555544 45666777777666654421
Q ss_pred ------cccc-ccccccCCCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 78 ------NVPL-GSFSNIQTGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 78 ------~~~l-~~l~~i~~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
...+ ..+.++.-+++|+ |.|-+.++-+|+.+.+.|. .|-++|+.|-++.|..++..|++| .++.|||||
T Consensus 304 V~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGy-scyyiHakM~Q~hRNrVFHdFr~G--~crnLVctD 380 (459)
T KOG0326|consen 304 VEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGY-SCYYIHAKMAQEHRNRVFHDFRNG--KCRNLVCTD 380 (459)
T ss_pred echhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccc-hhhHHHHHHHHhhhhhhhhhhhcc--ccceeeehh
Confidence 1122 1234556666766 4599999999999999998 899999999999999999999999 999999999
Q ss_pred cccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe----cCCCHHHHHHhhCCCCccc
Q 015049 150 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL----DSEDLPLLHKSLLEPSPML 224 (414)
Q Consensus 150 al~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~----~~~d~~~l~~~l~~~~~~i 224 (414)
.+-+|||++ +..||+.+.|| +.+.|+||+||+||+|+- |..+.+ +..++..+++-+..+..||
T Consensus 381 L~TRGIDiqavNvVINFDfpk---------~aEtYLHRIGRsGRFGhl---GlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPK---------NAETYLHRIGRSGRFGHL---GLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred hhhcccccceeeEEEecCCCC---------CHHHHHHHccCCccCCCc---ceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 999999995 88889999999 999999999999999986 554433 3335567788888888776
Q ss_pred cc
Q 015049 225 ES 226 (414)
Q Consensus 225 ~~ 226 (414)
.+
T Consensus 449 p~ 450 (459)
T KOG0326|consen 449 PS 450 (459)
T ss_pred CC
Confidence 53
No 35
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.6e-22 Score=198.84 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=165.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCc--eEEeeccccCC-Ccc--c-
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDD--VKVQSYERLSP-LVP--L- 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~--~~v~~~~r~~p-l~~--~- 77 (414)
+.++.++|+||||.|++..+...++.++--++..+.++++++++.+-+++++..- ..+ +.+.+..+..| |.. .
T Consensus 325 ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 325 LDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIR 404 (691)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhe
Confidence 5689999999999999877777788888888888899999999999999998853 333 33433332222 110 0
Q ss_pred --------cc-cc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE
Q 015049 78 --------NV-PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 146 (414)
Q Consensus 78 --------~~-~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV 146 (414)
.. .+ ..+.+.-...+|||+ |++.|+++.-.|--.|. +++-+||+|++++|...+++|+++ +++|||
T Consensus 405 IR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl-~agElHGsLtQ~QRlesL~kFk~~--eidvLi 481 (691)
T KOG0338|consen 405 IRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL-KAGELHGSLTQEQRLESLEKFKKE--EIDVLI 481 (691)
T ss_pred eccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc-hhhhhcccccHHHHHHHHHHHHhc--cCCEEE
Confidence 00 01 111222234477777 99999999888877776 899999999999999999999998 999999
Q ss_pred EcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHHhhCCC---C
Q 015049 147 ASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLLEP---S 221 (414)
Q Consensus 147 aTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~~l~~~---~ 221 (414)
|||++++||||+ |..||++..|+ +...|+||+||+.|+|.. |..+++ ...|...++..+... .
T Consensus 482 aTDvAsRGLDI~gV~tVINy~mP~---------t~e~Y~HRVGRTARAGRa---GrsVtlvgE~dRkllK~iik~~~~a~ 549 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVINYAMPK---------TIEHYLHRVGRTARAGRA---GRSVTLVGESDRKLLKEIIKSSTKAG 549 (691)
T ss_pred EechhhccCCccceeEEEeccCch---------hHHHHHHHhhhhhhcccC---cceEEEeccccHHHHHHHHhhhhhcc
Confidence 999999999994 99999999999 999999999999999987 776555 455666777766652 2
Q ss_pred cccccCCCCCCHHHHHHHHhc
Q 015049 222 PMLESAGLFPNFDLIYMYSRL 242 (414)
Q Consensus 222 ~~i~~~~i~p~~~~l~~~~~~ 242 (414)
..+....+ +.+.++.|...
T Consensus 550 ~klk~R~i--~~~~Iek~~~~ 568 (691)
T KOG0338|consen 550 SKLKNRNI--PPEVIEKFRKK 568 (691)
T ss_pred cchhhcCC--CHHHHHHHHHH
Confidence 23332323 33566666543
No 36
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=3.1e-21 Score=209.45 Aligned_cols=271 Identities=17% Similarity=0.149 Sum_probs=175.4
Q ss_pred CcCCCcCEEEEecccc-cCCCCcchhHHHHHh-CCCC-CcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc-
Q 015049 3 DVVSDYDCAVIDEIQM-LGCKTRGFSFTRALL-GICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN- 78 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~-i~d~~rG~~~~~~l~-~l~a-~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~- 78 (414)
+.++++++|||||+|+ ..+.+.+.++..-+. .++. .++.+++++-.... +...+++...+....|..|++...
T Consensus 109 ~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~~pVe~~y~ 185 (819)
T TIGR01970 109 PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGRSFPVEIRYL 185 (819)
T ss_pred cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcceeeeeEEe
Confidence 3578999999999995 566677766544333 3432 23444444433332 344444333333333333333210
Q ss_pred -------------cccccccccCCCCEEEEe-cHHHHHHHHHHHHHc--CCCeEEEecCCCCHHHHHHHHHHhhCCCCcc
Q 015049 79 -------------VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDASSEF 142 (414)
Q Consensus 79 -------------~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~--~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~ 142 (414)
..+..+..-..|++|||+ ++.+++.+++.|++. ....+..+||+|++++|..+++.|++| +.
T Consensus 186 ~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G--~r 263 (819)
T TIGR01970 186 PLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG--RR 263 (819)
T ss_pred ecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC--Ce
Confidence 001111112368888877 999999999999873 123788999999999999999999998 89
Q ss_pred cEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHH
Q 015049 143 DVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 212 (414)
Q Consensus 143 ~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~ 212 (414)
+||||||++++|||+| |+.||.++.++ ||.. ...++|.+++.||+|||||.+ . |.|+.+..++ .
T Consensus 264 kVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~-~---G~cyrL~t~~--~ 337 (819)
T TIGR01970 264 KVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE-P---GVCYRLWSEE--Q 337 (819)
T ss_pred EEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC-C---CEEEEeCCHH--H
Confidence 9999999999999996 99999999875 5532 235679999999999999984 3 8888887643 2
Q ss_pred HHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhcc
Q 015049 213 LHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 282 (414)
Q Consensus 213 l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (414)
...+.....++|....+.+..-.+..+. ..+|...+...++.+..+..++....+ ..+...|..
T Consensus 338 ~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~l------T~~G~~~~~ 411 (819)
T TIGR01970 338 HQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRL------TAHGKAMAA 411 (819)
T ss_pred HHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCc------CHHHHHHHh
Confidence 2333444455566665544333333322 124455666777777777776655433 344555666
Q ss_pred CCCCHHHH
Q 015049 283 LPLRLHEK 290 (414)
Q Consensus 283 ~~l~~~~~ 290 (414)
+++.+..-
T Consensus 412 lp~~p~l~ 419 (819)
T TIGR01970 412 LGCHPRLA 419 (819)
T ss_pred cCCCHHHH
Confidence 66655443
No 37
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=7e-22 Score=209.18 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=166.8
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC------CCCcEEEEecCCChHHHHHHHHHcCCc-----eEEeeccccC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLS 72 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l------~a~~i~l~g~~~~~~~i~~l~~~~~~~-----~~v~~~~r~~ 72 (414)
+.+.++++||||+|++-| +||++++.++..+ +...|+++|.++++|++++++.|++.+ +.+....|+.
T Consensus 235 l~~~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 235 LFSLVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred hhhheeeEEeeeehhhcC-cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccccc
Confidence 567899999999999985 6999999876443 456799999999999999999998875 4556667888
Q ss_pred CCccccccc---------c---------cccccCCCCEEEEe--cHHHHHHHHHHHHHcC---------------C----
Q 015049 73 PLVPLNVPL---------G---------SFSNIQTGDCIVTF--SRHAIYRLKKAIESRG---------------K---- 113 (414)
Q Consensus 73 pl~~~~~~l---------~---------~l~~i~~g~~Iv~f--sr~~~~~l~~~L~~~~---------------~---- 113 (414)
|+.....-. . ..+.+..|.-+++| ||+++-+.|+.|.+.. .
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 887311000 0 11223455555544 9999999999886511 1
Q ss_pred ---CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcc--cccCCHHHHHhhhc
Q 015049 114 ---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAG 188 (414)
Q Consensus 114 ---~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~--~~~ls~~~~~QraG 188 (414)
.+.++||+||+.++|..+++.|..| .++||+||.++++|+|+|...||+.+.+-||... ...++..+.+|+.|
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G--~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifG 471 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEG--HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFG 471 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcC--CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHh
Confidence 2678999999999999999999998 8999999999999999999999999999999654 66789999999999
Q ss_pred ccCCCCCCCCceEEEEecCCC-HHHHHHhhCCCCccccc
Q 015049 189 RAGRYGSKFPVGEVTCLDSED-LPLLHKSLLEPSPMLES 226 (414)
Q Consensus 189 RAGR~g~~~~~G~v~~~~~~d-~~~l~~~l~~~~~~i~~ 226 (414)
||||.+.+ +.|..+.+...| +..+...+.+. .++++
T Consensus 472 RAGRPqFd-~~G~giIiTt~dkl~~Y~sLl~~~-~piES 508 (1230)
T KOG0952|consen 472 RAGRPQFD-SSGEGIIITTRDKLDHYESLLTGQ-NPIES 508 (1230)
T ss_pred ccCCCCCC-CCceEEEEecccHHHHHHHHHcCC-ChhHH
Confidence 99999976 445544444444 34444444433 34443
No 38
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.86 E-value=2.3e-20 Score=202.94 Aligned_cols=269 Identities=15% Similarity=0.159 Sum_probs=173.5
Q ss_pred CcCCCcCEEEEeccccc-CCCCcchhHHH-HHhCCCC-CcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccc
Q 015049 3 DVVSDYDCAVIDEIQML-GCKTRGFSFTR-ALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNV 79 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i-~d~~rG~~~~~-~l~~l~a-~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~ 79 (414)
+.+.+++++||||+|+. .+.+...++.. ++..++. .++.+++++-..+ .+...+++...+....|..|++....
T Consensus 112 ~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~---~l~~~~~~~~~I~~~gr~~pV~~~y~ 188 (812)
T PRK11664 112 PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND---RLQQLLPDAPVIVSEGRSFPVERRYQ 188 (812)
T ss_pred CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH---HHHHhcCCCCEEEecCccccceEEec
Confidence 45789999999999974 33333333322 2233432 2333444433332 34444444333433344434332100
Q ss_pred --------------ccccccccCCCCEEEEe-cHHHHHHHHHHHHH---cCCCeEEEecCCCCHHHHHHHHHHhhCCCCc
Q 015049 80 --------------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIES---RGKHLCSIVYGSLPPETRTRQATRFNDASSE 141 (414)
Q Consensus 80 --------------~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~---~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~ 141 (414)
.+..+.....|+++||+ ++++++.+++.|++ .+. .+..+||+|++++|..+++.|++| +
T Consensus 189 ~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~-~v~~Lhg~l~~~eq~~~~~~~~~G--~ 265 (812)
T PRK11664 189 PLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDV-LLCPLYGALSLAEQQKAILPAPAG--R 265 (812)
T ss_pred cCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCc-eEEEeeCCCCHHHHHHHhccccCC--C
Confidence 01111122368888887 99999999999986 333 788899999999999999999998 8
Q ss_pred ccEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHH
Q 015049 142 FDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 211 (414)
Q Consensus 142 ~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~ 211 (414)
.+||||||++++|||+| |+.||.++.++ ||.. ...++|.+++.||+|||||.+ . |.|+.+..++
T Consensus 266 rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~-~---G~cyrL~t~~-- 339 (812)
T PRK11664 266 RKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE-P---GICLHLYSKE-- 339 (812)
T ss_pred eEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC-C---cEEEEecCHH--
Confidence 99999999999999996 99999999876 6632 234678999999999999984 3 9998886643
Q ss_pred HHHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhc
Q 015049 212 LLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 281 (414)
Q Consensus 212 ~l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 281 (414)
....+.....++|....+.+..-.+..+. +.++...+...++.+..+..++....+ ..+...|.
T Consensus 340 ~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~l------T~~G~~m~ 413 (812)
T PRK11664 340 QAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRL------TARGRKMA 413 (812)
T ss_pred HHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCc------CHHHHHHH
Confidence 22334445555666665544333333322 224556677777777777777655433 34455666
Q ss_pred cCCCCHHH
Q 015049 282 QLPLRLHE 289 (414)
Q Consensus 282 ~~~l~~~~ 289 (414)
.+++++.-
T Consensus 414 ~lp~~Prl 421 (812)
T PRK11664 414 ALGNDPRL 421 (812)
T ss_pred hcCCchHH
Confidence 66665544
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=181.19 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=148.3
Q ss_pred CCCcCEEEEecccccCCCC-cchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCc--eEEeeccc-cCCCc---c
Q 015049 5 VSDYDCAVIDEIQMLGCKT-RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDD--VKVQSYER-LSPLV---P 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~-rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~--~~v~~~~r-~~pl~---~ 76 (414)
.+.+.++|+|||+.+.|.+ ++..-..+...++.....+..+.+-.+.+..++..+ .+. +.++..+- +.++. +
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv 309 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV 309 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee
Confidence 4578899999998776532 445555666667766666777777777777777654 222 22221110 11111 1
Q ss_pred cc-------ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 LN-------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 ~~-------~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.. ..+ ..+..+.-|+.|+|+ ||+.+..++..+...|. .|+++||.|.-++|..+.+.|++| ..+|||+
T Consensus 310 ~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~~~R~~ii~~Fr~g--~~kVLit 386 (477)
T KOG0332|consen 310 LCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTVEQRAAIIDRFREG--KEKVLIT 386 (477)
T ss_pred eccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchhHHHHHHHHHHhcC--cceEEEE
Confidence 00 011 112334457777766 99999999999999997 999999999999999999999999 8899999
Q ss_pred cCcccccccCC-ccEEEEcccc-ccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC--CH---HHHHHhhCCC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMK-KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE--DL---PLLHKSLLEP 220 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~-k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~--d~---~~l~~~l~~~ 220 (414)
||+++||||++ |..||++++| +|+|. -+.+.|+||+||+||+|+. |.++.+..+ .+ ..+.+.++..
T Consensus 387 TnV~ARGiDv~qVs~VvNydlP~~~~~~----pD~etYlHRiGRtGRFGkk---G~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVNYDLPVKYTGE----PDYETYLHRIGRTGRFGKK---GLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred echhhcccccceEEEEEecCCccccCCC----CCHHHHHHHhccccccccc---ceEEEeecccCcHHHHHHHHHHHhhc
Confidence 99999999996 9999999977 45554 2899999999999999987 887766433 22 3456666554
Q ss_pred Cc
Q 015049 221 SP 222 (414)
Q Consensus 221 ~~ 222 (414)
..
T Consensus 460 i~ 461 (477)
T KOG0332|consen 460 IK 461 (477)
T ss_pred ce
Confidence 44
No 40
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.85 E-value=7.8e-21 Score=188.11 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=153.1
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc--CCceEEeecc--------ccCCC
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT--GDDVKVQSYE--------RLSPL 74 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~--~~~~~v~~~~--------r~~pl 74 (414)
.++++++||||||.++|..+-..+.+++--+|.....++.+++..+.+++++... .+...+.... +...-
T Consensus 228 ~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qg 307 (543)
T KOG0342|consen 228 FRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQG 307 (543)
T ss_pred hhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccce
Confidence 4567899999999999888888899999999988889999999888899888743 2233332211 11100
Q ss_pred ccc---ccc----cccccc-cCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEE
Q 015049 75 VPL---NVP----LGSFSN-IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 145 (414)
Q Consensus 75 ~~~---~~~----l~~l~~-i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VL 145 (414)
-+. ... +..+++ +....+|||| |...+..++..|+.... .|--+||++++..|..+...|++. +--||
T Consensus 308 yvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl-pv~eiHgk~~Q~kRT~~~~~F~ka--esgIL 384 (543)
T KOG0342|consen 308 YVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL-PVLEIHGKQKQNKRTSTFFEFCKA--ESGIL 384 (543)
T ss_pred EEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC-chhhhhcCCcccccchHHHHHhhc--ccceE
Confidence 000 000 011222 2235677777 78888888998886666 899999999999999999999987 66799
Q ss_pred EEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhC
Q 015049 146 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 218 (414)
Q Consensus 146 VaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~ 218 (414)
||||+.+||+|+| |+.||+++.|. ++.+|+||+||+||.|.. |.| +..+.++++..++..-.
T Consensus 385 ~cTDVaARGlD~P~V~~VvQ~~~P~---------d~~~YIHRvGRTaR~gk~-G~a-lL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 385 VCTDVAARGLDIPDVDWVVQYDPPS---------DPEQYIHRVGRTAREGKE-GKA-LLLLAPWELGFLRYLKK 447 (543)
T ss_pred EecchhhccCCCCCceEEEEeCCCC---------CHHHHHHHhccccccCCC-ceE-EEEeChhHHHHHHHHhh
Confidence 9999999999997 99999999998 999999999999998875 333 44567888888776553
No 41
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=180.06 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=153.1
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC---CceEEeeccccC--------
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG---DDVKVQSYERLS-------- 72 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~---~~~~v~~~~r~~-------- 72 (414)
.+++++++|+|||+.+.+..+-..++.++..+|..+.+++.+.+..+.++.+...-- ..+++....-..
T Consensus 150 ~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~ 229 (442)
T KOG0340|consen 150 IFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQG 229 (442)
T ss_pred hhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhh
Confidence 467899999999999999988889999999999988888888887777776664311 123333222111
Q ss_pred ----CCcc----cccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCccc
Q 015049 73 ----PLVP----LNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 143 (414)
Q Consensus 73 ----pl~~----~~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~ 143 (414)
|... ....+..+++-.++.+++|. +..+|..++..|...+. .+..+||-+|+.+|...+.+|+.+ .++
T Consensus 230 yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~-r~~~lHs~m~Q~eR~~aLsrFrs~--~~~ 306 (442)
T KOG0340|consen 230 YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV-RVVSLHSQMPQKERLAALSRFRSN--AAR 306 (442)
T ss_pred eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-eeeehhhcchHHHHHHHHHHHhhc--Ccc
Confidence 1111 11122223332456666655 88899999999998888 899999999999999999999998 999
Q ss_pred EEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEE-EecCCCHHH---HHHhhC
Q 015049 144 VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT-CLDSEDLPL---LHKSLL 218 (414)
Q Consensus 144 VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~-~~~~~d~~~---l~~~l~ 218 (414)
+|||||++++|+|+| |+.||++++|. ++.+|+||+||+.|+|.. |..+ .+.+.|+.. +++-++
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN~diPr---------~P~~yiHRvGRtARAGR~---G~aiSivt~rDv~l~~aiE~~ig 374 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVNHDIPR---------DPKDYIHRVGRTARAGRK---GMAISIVTQRDVELLQAIEEEIG 374 (442)
T ss_pred EEEEechhhcCCCCCceeEEEecCCCC---------CHHHHHHhhcchhcccCC---cceEEEechhhHHHHHHHHHHHh
Confidence 999999999999998 99999999998 999999999999999986 4333 233445543 344444
Q ss_pred CCCcc
Q 015049 219 EPSPM 223 (414)
Q Consensus 219 ~~~~~ 223 (414)
+...+
T Consensus 375 kKl~e 379 (442)
T KOG0340|consen 375 KKLTE 379 (442)
T ss_pred ccccc
Confidence 44433
No 42
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.84 E-value=4e-20 Score=196.71 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=128.4
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCC-CCcEEEEecCCChHHHHHHHHHcCCceEEeecccc-CCCccc---
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL-SPLVPL--- 77 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~-~pl~~~--- 77 (414)
+.+++++++||||||++.+. |......+..+. .....++.+++..+.++.+...+++...+....+. .|++..
T Consensus 287 ~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~ 364 (675)
T PHA02653 287 NKLFDYGTVIIDEVHEHDQI--GDIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVK 364 (675)
T ss_pred cccccCCEEEccccccCccc--hhHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEee
Confidence 35788999999999999743 333322332332 22234444444433455666666654444333332 222210
Q ss_pred ------------cc----ccccccc---cCCCCEEEEe-cHHHHHHHHHHHHHcC-CCeEEEecCCCCHHHHHHHHHHh-
Q 015049 78 ------------NV----PLGSFSN---IQTGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF- 135 (414)
Q Consensus 78 ------------~~----~l~~l~~---i~~g~~Iv~f-sr~~~~~l~~~L~~~~-~~~v~~ihg~L~~e~R~~~~~~F- 135 (414)
.. .+..+.. ...|++|||+ ++.+++.+++.|++.. ...+..+||+|++. .+++++|
T Consensus 365 ~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff 442 (675)
T PHA02653 365 NKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY 442 (675)
T ss_pred cCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh
Confidence 00 0111111 1246788877 9999999999998762 23899999999975 4666777
Q ss_pred hCCCCcccEEEEcCcccccccCC-ccEEEEcc---ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 136 NDASSEFDVLVASDAIGMGLNLN-ISRIIFST---MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 136 ~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~---~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
++| +.+||||||++++|||+| |+.||.++ .|...+....++|.++|.||+|||||.+ . |.|+.+..+
T Consensus 443 ~~g--k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~-~---G~c~rLyt~ 513 (675)
T PHA02653 443 SSK--NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS-P---GTYVYFYDL 513 (675)
T ss_pred ccC--ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC-C---CeEEEEECH
Confidence 676 899999999999999996 99999998 3432222345779999999999999983 3 777766543
No 43
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.7e-20 Score=184.68 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=145.1
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEEeecccc---CC--Cccc--
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERL---SP--LVPL-- 77 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v~~~~r~---~p--l~~~-- 77 (414)
++++++|+||||.+.|.++-.....+|..||..+.+=.++++...-+.++... +.+.+.|.....- +| |...
T Consensus 156 rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred cccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 48999999999999999999999999999997655555566666667776653 2333443322211 44 3211
Q ss_pred -cc-------ccccccccCCCCEEEEe-cHHHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 78 -NV-------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 78 -~~-------~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.. .+..+.....+.||||| |...++.....+... +...+..+||.+++..|..+++.|++. .-.+|+|
T Consensus 236 v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~--~~~vl~~ 313 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL--SNGVLFC 313 (567)
T ss_pred EecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc--cCceEEe
Confidence 01 11223344557799988 999999999988875 444788899999999999999999985 4469999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHH
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 213 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l 213 (414)
||++++|||+| |+.||+++.|+ +++.|.||+||+||.|.. |..++ .+.+.+..++
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~---------~~~~FvHR~GRTaR~gr~-G~Aiv-fl~p~E~aYv 369 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPK---------DPSSFVHRCGRTARAGRE-GNAIV-FLNPREEAYV 369 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCC---------ChhHHHhhcchhhhccCc-cceEE-EecccHHHHH
Confidence 99999999997 99999999999 999999999999999987 33333 3344444333
No 44
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.7e-20 Score=186.50 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=140.5
Q ss_pred CCCcCEEEEecccccCC-CCcchhHHHHHhCCCC----CcEEEEecCCChHHHHHHHHHcCCc-eEEe---eccccCC--
Q 015049 5 VSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA----NELHLCGDPAAVPLIQQILQVTGDD-VKVQ---SYERLSP-- 73 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d-~~rG~~~~~~l~~l~a----~~i~l~g~~~~~~~i~~l~~~~~~~-~~v~---~~~r~~p-- 73 (414)
+++++++|+|||+.|.| ..+|..+..++..... ..+.++++++-...++.++..+-.+ +... ...+...
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 46788999999999999 9999999999876642 4456666666655666666544222 2211 1111111
Q ss_pred -----C-c---cccccccccccc----CCC-----CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHH
Q 015049 74 -----L-V---PLNVPLGSFSNI----QTG-----DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 134 (414)
Q Consensus 74 -----l-~---~~~~~l~~l~~i----~~g-----~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~ 134 (414)
. . ...+.+..+... ..+ ..+||. |++.+..++..|...+. ++.-+||...+.+|.+.++.
T Consensus 304 ~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~-~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 304 TQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY-PAKSIHGDRTQIEREQALND 382 (482)
T ss_pred eeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC-CceeecchhhhhHHHHHHHH
Confidence 0 0 001111111111 123 355555 99999999999999998 88899999999999999999
Q ss_pred hhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 135 FNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 135 F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
|++| .+.+||||+++++|+|+| |++||+|++|+ +..+|+||+||+||.|.. |..+.|..
T Consensus 383 Fr~g--~~pvlVaT~VaaRGlDi~~V~hVInyDmP~---------d~d~YvHRIGRTGR~Gn~---G~atsf~n 442 (482)
T KOG0335|consen 383 FRNG--KAPVLVATNVAARGLDIPNVKHVINYDMPA---------DIDDYVHRIGRTGRVGNG---GRATSFFN 442 (482)
T ss_pred hhcC--CcceEEEehhhhcCCCCCCCceeEEeecCc---------chhhHHHhccccccCCCC---ceeEEEec
Confidence 9999 999999999999999996 99999999999 899999999999999987 88887654
No 45
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=8.2e-21 Score=203.39 Aligned_cols=211 Identities=22% Similarity=0.258 Sum_probs=163.1
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHHHcCCc----eEEeeccccCCC
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTGDD----VKVQSYERLSPL 74 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~~~~~~----~~v~~~~r~~pl 74 (414)
.+-|+++||||+|++.| +||..++....... .....+.|.+++.|+.++.+..++.. +.+.+..|++||
T Consensus 435 ~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL 513 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPL 513 (1674)
T ss_pred HHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCc
Confidence 45688999999999986 69999987764431 24578999999999999999876544 355667899999
Q ss_pred ccc------cccccc------------ccccCCCCEEEEe-cHHHHHHHHHHHHH-------------------------
Q 015049 75 VPL------NVPLGS------------FSNIQTGDCIVTF-SRHAIYRLKKAIES------------------------- 110 (414)
Q Consensus 75 ~~~------~~~l~~------------l~~i~~g~~Iv~f-sr~~~~~l~~~L~~------------------------- 110 (414)
... .+++.. +....+++++||. ||+++-+.|+.++.
T Consensus 514 ~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrte 593 (1674)
T KOG0951|consen 514 KQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTE 593 (1674)
T ss_pred cceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhh
Confidence 832 222211 2334567888887 99999999988873
Q ss_pred -----------cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCC--ccccc
Q 015049 111 -----------RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG--VELRD 177 (414)
Q Consensus 111 -----------~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg--~~~~~ 177 (414)
....+.++||+||...+|..+++.|++| .++|+|+|.++++|+|+|.+.||+-+...||. ....+
T Consensus 594 a~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g--~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~e 671 (1674)
T KOG0951|consen 594 AGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG--HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTE 671 (1674)
T ss_pred hhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC--ceeEEEeehhhhhhcCCCcceEEecCccccCcccCcccc
Confidence 1123789999999999999999999999 99999999999999999999999999999985 35678
Q ss_pred CCHHHHHhhhcccCCCCCC-CCceEEEEecCCCHHHHHHhhCC
Q 015049 178 LTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 178 ls~~~~~QraGRAGR~g~~-~~~G~v~~~~~~d~~~l~~~l~~ 219 (414)
+++.+.+||.|||||.+-+ ++.|.+++ ...++.+....++.
T Consensus 672 lsp~dv~qmlgragrp~~D~~gegiiit-~~se~qyyls~mn~ 713 (1674)
T KOG0951|consen 672 LSPLDVMQMLGRAGRPQYDTCGEGIIIT-DHSELQYYLSLMNQ 713 (1674)
T ss_pred CCHHHHHHHHhhcCCCccCcCCceeecc-CchHhhhhHHhhhh
Confidence 9999999999999999976 23344433 33355544444443
No 46
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.83 E-value=5.9e-20 Score=183.69 Aligned_cols=213 Identities=16% Similarity=0.144 Sum_probs=158.4
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeec--c-ccCC--Ccc--c
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSY--E-RLSP--LVP--L 77 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~--~-r~~p--l~~--~ 77 (414)
.++.++|+|||+.+.|+++...+..++..+|....++.++++....+++++... .++..|..+ . --+| |.. .
T Consensus 214 ~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~ 293 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYV 293 (758)
T ss_pred CcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEE
Confidence 568899999999999999989999999999999999999999988899999864 344333222 1 1122 221 0
Q ss_pred ----c---ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcC-CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 78 ----N---VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 78 ----~---~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~-~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ..| ..++...+...|||| |.+.+..+...+++.. +..+..+||.|++..|..+..+|... +--||+|
T Consensus 294 ~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~ 371 (758)
T KOG0343|consen 294 IVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFC 371 (758)
T ss_pred EEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEe
Confidence 0 111 112333455678877 8999999999888642 23778899999999999999999886 6679999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCccccc
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 226 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~ 226 (414)
||++++|+|+| |+.||.++.|. ++++|+||+||+.|++.. |..+++.... +...+-..++...-++..
T Consensus 372 TDv~aRGLDFpaVdwViQ~DCPe---------dv~tYIHRvGRtAR~~~~-G~sll~L~ps-EeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 372 TDVAARGLDFPAVDWVIQVDCPE---------DVDTYIHRVGRTARYKER-GESLLMLTPS-EEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred ehhhhccCCCcccceEEEecCch---------hHHHHHHHhhhhhcccCC-CceEEEEcch-hHHHHHHHHHHcCCCHHh
Confidence 99999999998 99999999998 999999999999999976 5555554444 433343344444445554
Q ss_pred CCCCC
Q 015049 227 AGLFP 231 (414)
Q Consensus 227 ~~i~p 231 (414)
..+.|
T Consensus 441 i~i~~ 445 (758)
T KOG0343|consen 441 IKIDP 445 (758)
T ss_pred hccCH
Confidence 44444
No 47
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=6.6e-20 Score=199.26 Aligned_cols=235 Identities=21% Similarity=0.240 Sum_probs=162.1
Q ss_pred cCEEEEecccccCCCCcchhHHHHHhCC-------CCCcEEEEecCCChHHHHHHHHHcCCc---eEEeeccccC-CCcc
Q 015049 8 YDCAVIDEIQMLGCKTRGFSFTRALLGI-------CANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLS-PLVP 76 (414)
Q Consensus 8 v~~vVIDE~h~i~d~~rG~~~~~~l~~l-------~a~~i~l~g~~~~~~~i~~l~~~~~~~---~~v~~~~r~~-pl~~ 76 (414)
+..+||||||+++ +||+.|...+..+ +.-.+.-..++++....++++..++-. +.-..+.|++ .+.+
T Consensus 386 lal~vIDEAHCVS--qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV 463 (941)
T KOG0351|consen 386 LALFVIDEAHCVS--QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEV 463 (941)
T ss_pred eEEEEecHHHHhh--hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEE
Confidence 7889999999998 9999988776443 222333344555556677777766432 3333444443 1111
Q ss_pred cccc--------cccccccCCCC-EEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE
Q 015049 77 LNVP--------LGSFSNIQTGD-CIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 146 (414)
Q Consensus 77 ~~~~--------l~~l~~i~~g~-~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV 146 (414)
..+. +...+...+++ .|| |.+|++|+.++..|+..+. +++.+|+||++..|..+.+.|..+ +++|+|
T Consensus 464 ~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~-~a~~YHAGl~~~~R~~Vq~~w~~~--~~~Viv 540 (941)
T KOG0351|consen 464 SPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGK-SAAFYHAGLPPKERETVQKAWMSD--KIRVIV 540 (941)
T ss_pred EeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhch-hhHhhhcCCCHHHHHHHHHHHhcC--CCeEEE
Confidence 1111 11122233333 455 7799999999999999997 999999999999999999999998 899999
Q ss_pred EcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCcccc
Q 015049 147 ASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 225 (414)
Q Consensus 147 aTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~ 225 (414)
||=|+|||||.| |+.||++++|| +.+.|+|-+|||||.|.. .-+++.+...|...++.++......-.
T Consensus 541 ATVAFGMGIdK~DVR~ViH~~lPk---------s~E~YYQE~GRAGRDG~~--s~C~l~y~~~D~~~l~~ll~s~~~~~~ 609 (941)
T KOG0351|consen 541 ATVAFGMGIDKPDVRFVIHYSLPK---------SFEGYYQEAGRAGRDGLP--SSCVLLYGYADISELRRLLTSGNRLSG 609 (941)
T ss_pred EEeeccCCCCCCceeEEEECCCch---------hHHHHHHhccccCcCCCc--ceeEEecchhHHHHHHHHHHccccccc
Confidence 999999999985 99999999999 999999999999999975 445555666688888877776511100
Q ss_pred -cC-CCCCCHHHHHHHHhcCCCchHHHHHHHHHHh
Q 015049 226 -SA-GLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 258 (414)
Q Consensus 226 -~~-~i~p~~~~l~~~~~~~~~~~l~~~l~~~~~~ 258 (414)
.. .-.....+...|++...+..-..++..|.+.
T Consensus 610 ~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 610 VKKFTRLLELVQVVTYCENETDCRRKQILEYFGEE 644 (941)
T ss_pred hhhccchhhHHHHHHhhcCccchhHHHHHHhcccc
Confidence 01 0111223344555544444444555555544
No 48
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=185.50 Aligned_cols=267 Identities=21% Similarity=0.268 Sum_probs=187.5
Q ss_pred CCCcCCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCC
Q 015049 1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 74 (414)
Q Consensus 1 m~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl 74 (414)
+.|.+++|++|||||||+-+ .-|+.|+|+- ...+.++-.+++.+ .+++...++..-.+....|.-|+
T Consensus 157 ~Dp~LskYsvIIlDEAHERs------l~TDiLlGlLKki~~~R~~LklIimSATld-a~kfS~yF~~a~i~~i~GR~fPV 229 (674)
T KOG0922|consen 157 KDPLLSKYSVIILDEAHERS------LHTDILLGLLKKILKKRPDLKLIIMSATLD-AEKFSEYFNNAPILTIPGRTFPV 229 (674)
T ss_pred cCCccccccEEEEechhhhh------hHHHHHHHHHHHHHhcCCCceEEEEeeeec-HHHHHHHhcCCceEeecCCCCce
Confidence 36789999999999999875 2377777762 23445544455544 34444444433333444455554
Q ss_pred cc----------cccccccc----cccCCCCEEEEe-cHHHHHHHHHHHHHcCCC-------eEEEecCCCCHHHHHHHH
Q 015049 75 VP----------LNVPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIESRGKH-------LCSIVYGSLPPETRTRQA 132 (414)
Q Consensus 75 ~~----------~~~~l~~l----~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~-------~v~~ihg~L~~e~R~~~~ 132 (414)
++ ....+..+ ..-++||++||. .+.+++.+.+.|.+.... -+..+||+||++++.+++
T Consensus 230 ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 230 EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 42 11222111 234589999998 799999999999764210 235789999999988888
Q ss_pred HHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEE
Q 015049 133 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202 (414)
Q Consensus 133 ~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v 202 (414)
+.-..| ..||++|||+++..|.|| |.+||..+..| |+.. ...|+|.++..||+|||||.|. |.|
T Consensus 310 ~p~p~g--~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p----Gkc 383 (674)
T KOG0922|consen 310 DPAPPG--KRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP----GKC 383 (674)
T ss_pred cCCCCC--cceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC----ceE
Confidence 877766 889999999999999996 99999887655 5542 2467899999999999999873 899
Q ss_pred EEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHHHh----------cCCCchHHHHHHHHHHhcccCCCccccCHHH
Q 015049 203 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR----------LHPDSSLYGILEHFLENAKLSENYFFANCEE 272 (414)
Q Consensus 203 ~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 272 (414)
+.++.++ .+.++.....++|.+..+....-+|..+.- .++..++...|+.++.+..++..-.+++.
T Consensus 384 yRLYte~--~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p-- 459 (674)
T KOG0922|consen 384 YRLYTES--AYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSP-- 459 (674)
T ss_pred EEeeeHH--HHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCch--
Confidence 9887754 337777778888888888777666665432 25567788889999988888876666553
Q ss_pred HHHHHHhhccCCCCH
Q 015049 273 VLKVATVIDQLPLRL 287 (414)
Q Consensus 273 ~~~~~~~l~~~~l~~ 287 (414)
+...+..++|++
T Consensus 460 ---~G~~ma~~Pl~p 471 (674)
T KOG0922|consen 460 ---LGRQMAELPLEP 471 (674)
T ss_pred ---HHhhhhhcCCCc
Confidence 444555555544
No 49
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=190.50 Aligned_cols=213 Identities=24% Similarity=0.268 Sum_probs=157.4
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCC----CCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccc--
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGI----CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNV-- 79 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l----~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~-- 79 (414)
..++.||+||.||++|.+||..++..+..+ ....+.++|-+++.+++..+..|....+. ....|++||.-..+
T Consensus 340 ~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y-~t~fRPv~L~E~ik~G 418 (1008)
T KOG0950|consen 340 DFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVY-TTRFRPVPLKEYIKPG 418 (1008)
T ss_pred cccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhhe-ecccCcccchhccCCC
Confidence 457899999999999999999988876433 12347899999999999999998765433 33346666541100
Q ss_pred ----------ccccc---------------------cccCCCC-EEEEe-cHHHHHHHHHHHHH----------------
Q 015049 80 ----------PLGSF---------------------SNIQTGD-CIVTF-SRHAIYRLKKAIES---------------- 110 (414)
Q Consensus 80 ----------~l~~l---------------------~~i~~g~-~Iv~f-sr~~~~~l~~~L~~---------------- 110 (414)
.+..+ +.++.|. +|+|+ ||+.|+.++..+..
T Consensus 419 ~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~ 498 (1008)
T KOG0950|consen 419 SLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWE 498 (1008)
T ss_pred cccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHH
Confidence 00001 1123343 66655 99999988765543
Q ss_pred ---------------------cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccc
Q 015049 111 ---------------------RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 169 (414)
Q Consensus 111 ---------------------~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k 169 (414)
....++++||+||..++|+.++..|++| -+.|++||++++.|+|+|+++||+-. |.
T Consensus 499 ~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g--~i~vl~aTSTlaaGVNLPArRVIira-P~ 575 (1008)
T KOG0950|consen 499 LLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREG--NIFVLVATSTLAAGVNLPARRVIIRA-PY 575 (1008)
T ss_pred HHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhc--CeEEEEecchhhccCcCCcceeEEeC-Cc
Confidence 0112789999999999999999999999 88999999999999999999999865 33
Q ss_pred cCCcccccCCHHHHHhhhcccCCCCCCCCce-EEEEecCCCHHHHHHhhCCCCccccc
Q 015049 170 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVG-EVTCLDSEDLPLLHKSLLEPSPMLES 226 (414)
Q Consensus 170 ~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G-~v~~~~~~d~~~l~~~l~~~~~~i~~ 226 (414)
+ +..+++..+|+||+|||||.|.+ +.| .++.....+.....+.+..+.++..+
T Consensus 576 ~---g~~~l~~~~YkQM~GRAGR~gid-T~GdsiLI~k~~e~~~~~~lv~~~~~~~~S 629 (1008)
T KOG0950|consen 576 V---GREFLTRLEYKQMVGRAGRTGID-TLGDSILIIKSSEKKRVRELVNSPLKPLNS 629 (1008)
T ss_pred c---ccchhhhhhHHhhhhhhhhcccc-cCcceEEEeeccchhHHHHHHhcccccccc
Confidence 2 33467899999999999999987 667 45556666777777777777665443
No 50
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.80 E-value=2.4e-18 Score=191.38 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=162.3
Q ss_pred CcCCCcCEEEEecccc-cCCCCcchh-HHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccc
Q 015049 3 DVVSDYDCAVIDEIQM-LGCKTRGFS-FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 80 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~-i~d~~rG~~-~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~ 80 (414)
+.+++|+++||||||+ ..+.++-.. +...+..-+..++.+++++.. .+.+.+.++....+....|..|+.....+
T Consensus 182 ~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid---~e~fs~~F~~apvI~V~Gr~~pVei~y~p 258 (1294)
T PRK11131 182 RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATID---PERFSRHFNNAPIIEVSGRTYPVEVRYRP 258 (1294)
T ss_pred CccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCC---HHHHHHHcCCCCEEEEcCccccceEEEee
Confidence 4688999999999995 554443222 122221112234444444433 34566655543223333333333311100
Q ss_pred ------------c-------ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHhhCC
Q 015049 81 ------------L-------GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKH--LCSIVYGSLPPETRTRQATRFNDA 138 (414)
Q Consensus 81 ------------l-------~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~--~v~~ihg~L~~e~R~~~~~~F~~g 138 (414)
+ ..+....+|++|||+ ++.+++.+++.|++.+.. .+..+||+|++++|..+++. .|
T Consensus 259 ~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g 336 (1294)
T PRK11131 259 IVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS 336 (1294)
T ss_pred cccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC
Confidence 0 011123468888877 899999999999987652 36788999999999999875 34
Q ss_pred CCcccEEEEcCcccccccCC-ccEEEEcccc---ccCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 139 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMK---KFDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 139 ~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~---k~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
..+||||||++++|||+| |++||.++.. .||.. ...++|.++|.||+|||||.+ . |.|+.+..+
T Consensus 337 --~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~-~---G~c~rLyte 410 (1294)
T PRK11131 337 --GRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS-E---GICIRLYSE 410 (1294)
T ss_pred --CeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC-C---cEEEEeCCH
Confidence 789999999999999996 9999998753 35532 124568899999999999984 3 888888764
Q ss_pred CHHHHHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHH
Q 015049 209 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 278 (414)
Q Consensus 209 d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (414)
+. .........++|....+....-++..+. +.++..++...++.+..+..++..-.- +-..+..+..
T Consensus 411 ~d--~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~-~~~~LT~lG~ 487 (1294)
T PRK11131 411 DD--FLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQA-SAYKLTPLGR 487 (1294)
T ss_pred HH--HHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccC-CCccCcHHHH
Confidence 32 2233333344455444432222222221 123445666777777777766532100 0012334555
Q ss_pred hhccCCCCHHH
Q 015049 279 VIDQLPLRLHE 289 (414)
Q Consensus 279 ~l~~~~l~~~~ 289 (414)
.|..+++++..
T Consensus 488 ~la~LPldPrl 498 (1294)
T PRK11131 488 QLAQLPVDPRL 498 (1294)
T ss_pred HHHhCCCChHH
Confidence 55655555443
No 51
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=2e-18 Score=192.51 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=165.4
Q ss_pred CcCCCcCEEEEecccc-cCCCCcchhH-HHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccc
Q 015049 3 DVVSDYDCAVIDEIQM-LGCKTRGFSF-TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 80 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~-i~d~~rG~~~-~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~ 80 (414)
+.+.+|++|||||+|+ ..+.+....+ ..++...+..++.++++ +.+ .+.+.+.++....+....|..|+.....+
T Consensus 175 ~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA--Tld-~~~fa~~F~~apvI~V~Gr~~PVev~Y~~ 251 (1283)
T TIGR01967 175 RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA--TID-PERFSRHFNNAPIIEVSGRTYPVEVRYRP 251 (1283)
T ss_pred cccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC--CcC-HHHHHHHhcCCCEEEECCCcccceeEEec
Confidence 5678999999999995 5655554442 23322223334444443 333 35566665543233333333333321100
Q ss_pred -------------------cccccccCCCCEEEEe-cHHHHHHHHHHHHHcCC--CeEEEecCCCCHHHHHHHHHHhhCC
Q 015049 81 -------------------LGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRTRQATRFNDA 138 (414)
Q Consensus 81 -------------------l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~--~~v~~ihg~L~~e~R~~~~~~F~~g 138 (414)
+..+..-.+|+++||+ ++.+++.+++.|++.+. ..+..+||+|++++|..+++.+
T Consensus 252 ~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--- 328 (1283)
T TIGR01967 252 LVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--- 328 (1283)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---
Confidence 1111112468898888 99999999999997653 2577899999999999885543
Q ss_pred CCcccEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 139 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 139 ~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+..+||||||++++|||+| |++||.++.++ ||.. ...++|.++|.||+|||||.| . |.|+.+..+
T Consensus 329 -~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~---G~cyRLyte 403 (1283)
T TIGR01967 329 -SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-P---GICIRLYSE 403 (1283)
T ss_pred -CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-C---ceEEEecCH
Confidence 2468999999999999996 99999998765 5532 235678999999999999997 3 888888764
Q ss_pred CHHHHHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHH
Q 015049 209 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 278 (414)
Q Consensus 209 d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (414)
+. .........++|.+..+....-.+..+. +.++...+...++.+..+..++..-.. ..+..+..
T Consensus 404 ~~--~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~---~~LT~lGr 478 (1283)
T TIGR01967 404 ED--FNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAE---PQLTPIGR 478 (1283)
T ss_pred HH--HHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCC---ccccHHHH
Confidence 32 2222233344455444433322222211 123445667777777777776643210 01334455
Q ss_pred hhccCCCCHH
Q 015049 279 VIDQLPLRLH 288 (414)
Q Consensus 279 ~l~~~~l~~~ 288 (414)
.|..+++++.
T Consensus 479 ~ma~LPldPr 488 (1283)
T TIGR01967 479 QLAQLPVDPR 488 (1283)
T ss_pred HHhhcCCChH
Confidence 5555555544
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.80 E-value=1e-18 Score=195.65 Aligned_cols=185 Identities=17% Similarity=0.251 Sum_probs=129.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEEeecc-ccCCCccc----c
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYE-RLSPLVPL----N 78 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v~~~~-r~~pl~~~----~ 78 (414)
..+++++||||+|+++ ......+..++.....++.++++.+....++.. ..+...+.... ...++... .
T Consensus 720 ~~~L~lLVIDEahrfG-----~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~ 794 (1147)
T PRK10689 720 WKDLGLLIVDEEHRFG-----VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 (1147)
T ss_pred HhhCCEEEEechhhcc-----hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecC
Confidence 3689999999999974 333445555655545666666766655554432 22333332211 11122210 0
Q ss_pred c-cc--cccccc-CCCCEEEEe-cHHHHHHHHHHHHHc--CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc
Q 015049 79 V-PL--GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 79 ~-~l--~~l~~i-~~g~~Iv~f-sr~~~~~l~~~L~~~--~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal 151 (414)
. .+ ..+..+ +.|++++|+ +++.++.+++.|.+. +. +++++||+|++++|.+++.+|++| +++||||||++
T Consensus 795 ~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~-~v~~lHG~m~q~eRe~im~~Fr~G--k~~VLVaTdIi 871 (1147)
T PRK10689 795 SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRERELERVMNDFHHQ--RFNVLVCTTII 871 (1147)
T ss_pred cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEECchh
Confidence 0 00 001122 345666655 889999999999876 44 899999999999999999999998 99999999999
Q ss_pred cccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 152 GMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 152 ~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
++|||+| ++.||+.....| +.++|+||+||+||.|.. |+++.+.+.
T Consensus 872 erGIDIP~v~~VIi~~ad~f--------glaq~~Qr~GRvGR~g~~---g~a~ll~~~ 918 (1147)
T PRK10689 872 ETGIDIPTANTIIIERADHF--------GLAQLHQLRGRVGRSHHQ---AYAWLLTPH 918 (1147)
T ss_pred hcccccccCCEEEEecCCCC--------CHHHHHHHhhccCCCCCc---eEEEEEeCC
Confidence 9999996 999997765543 678899999999999976 888877543
No 53
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=1.1e-18 Score=174.59 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=87.6
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHH----HHHhhCCCCcccEEEEcCcccccccCCccEE
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQ----ATRFNDASSEFDVLVASDAIGMGLNLNISRI 162 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~----~~~F~~g~~~~~VLVaTdal~~Glnl~i~~V 162 (414)
++.++||+ |++.++.+++.|.+.+. ..+..+||++++.+|..+ .+.|++| ..++|||||++++|+|+|++.|
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~--~~~ilvaT~~~~~GiDi~~~~v 299 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN--EKFVIVATQVIEASLDISADVM 299 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC--CCeEEEECcchhceeccCCCEE
Confidence 45677766 99999999999987664 258999999999999764 7899998 8899999999999999999988
Q ss_pred EEccccccCCcccccCCHHHHHhhhcccCCCCCCCC-ceEEEEecC
Q 015049 163 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP-VGEVTCLDS 207 (414)
Q Consensus 163 I~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~-~G~v~~~~~ 207 (414)
|.+.. ++++|+||+||+||.|.+.+ .|.++.+..
T Consensus 300 i~~~~-----------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 300 ITELA-----------PIDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred EEcCC-----------CHHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 87542 56899999999999997632 356776654
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=5.6e-19 Score=171.29 Aligned_cols=192 Identities=17% Similarity=0.212 Sum_probs=143.8
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEee----------cccc--
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQS----------YERL-- 71 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~----------~~r~-- 71 (414)
+..+-++|+|||+.|+|+++..+...+++.+.....++..+++-.+-+++++... .+...+.. .+..
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE
Confidence 4678899999999999999999999999999988888888888778888888653 33322211 1100
Q ss_pred CCCcccc-cccc-cccccCCCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 72 SPLVPLN-VPLG-SFSNIQTGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 72 ~pl~~~~-~~l~-~l~~i~~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
++-+... ..+. .+......+ .|+|+ ++..+..|...+.-.|+ .+..+||+-.+.+|+..++.|+.| +++||||
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi-~~q~lHG~r~Q~DrE~al~~~ksG--~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGI-SSQSLHGNREQSDREMALEDFKSG--EVRILVA 521 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhccc-chhhccCChhhhhHHHHHHhhhcC--ceEEEEE
Confidence 0000000 0001 112334444 45555 45577778888877777 788899999999999999999999 9999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceE-EEEecCCCHH
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-VTCLDSEDLP 211 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~-v~~~~~~d~~ 211 (414)
||.+.+|||+| |.+|++++.|. +.++|+||+||+||.|.. |. ++++..+|..
T Consensus 522 TDlaSRGlDv~DiTHV~NyDFP~---------nIeeYVHRvGrtGRaGr~---G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYNYDFPR---------NIEEYVHRVGRTGRAGRT---GTSISFLTRNDWS 575 (629)
T ss_pred echhhcCCCchhcceeeccCCCc---------cHHHHHHHhcccccCCCC---cceEEEEehhhHH
Confidence 99999999995 99999999998 999999999999999986 54 3444555543
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.79 E-value=2.1e-18 Score=189.45 Aligned_cols=185 Identities=20% Similarity=0.273 Sum_probs=124.6
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEEee--ccccCCCccc----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQS--YERLSPLVPL---- 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v~~--~~r~~pl~~~---- 77 (414)
.++++++||||+|+++ ......+..++.....+..++++.+....+... ..+...+.. ..|. |+...
T Consensus 571 f~~L~llVIDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~-~V~t~v~~~ 644 (926)
T TIGR00580 571 FKDLGLLIIDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL-PVRTFVMEY 644 (926)
T ss_pred cccCCEEEeecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc-ceEEEEEec
Confidence 4789999999999864 333444555544333344444555533332211 112222221 1121 22110
Q ss_pred -cccc-cc-cccc-CCCCEEEEe-cHHHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc
Q 015049 78 -NVPL-GS-FSNI-QTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 78 -~~~l-~~-l~~i-~~g~~Iv~f-sr~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal 151 (414)
...+ .. ...+ +.+++++++ +++.++.+++.|.+. ...+++++||+|++++|..++++|++| +++|||||+++
T Consensus 645 ~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G--k~~ILVaT~ii 722 (926)
T TIGR00580 645 DPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG--EFQVLVCTTII 722 (926)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC--CCCEEEECChh
Confidence 0000 00 1122 345565544 899999999999875 223899999999999999999999998 99999999999
Q ss_pred cccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 152 GMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 152 ~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
++|+|+| ++.||+.+.+.| +.++|.||+||+||.|.. |+|+.+.+.
T Consensus 723 e~GIDIp~v~~VIi~~a~~~--------gls~l~Qr~GRvGR~g~~---g~aill~~~ 769 (926)
T TIGR00580 723 ETGIDIPNANTIIIERADKF--------GLAQLYQLRGRVGRSKKK---AYAYLLYPH 769 (926)
T ss_pred hcccccccCCEEEEecCCCC--------CHHHHHHHhcCCCCCCCC---eEEEEEECC
Confidence 9999996 999999887754 677999999999999976 998887653
No 56
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.78 E-value=6.9e-19 Score=169.65 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=143.2
Q ss_pred cCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCc-eEEeeccccC--CCccc-------
Q 015049 8 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD-VKVQSYERLS--PLVPL------- 77 (414)
Q Consensus 8 v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~-~~v~~~~r~~--pl~~~------- 77 (414)
..++++|||+.+.|..+......++......+.++.++++....++.+++..-.. +.++. .|-. .+.+.
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNV-GRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNV-GRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEec-ccccccchhHHHHHHHHH
Confidence 4678999999999998888888888888777788888888888899888864332 33322 2221 12211
Q ss_pred --cccc---ccccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 78 --NVPL---GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 78 --~~~l---~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.+.+ .-+++-.+.-.|+|-.+.++..+.++|--.|. .+..+|||-.+++|....+.|+.| +-+||||||++.
T Consensus 406 qEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGV-EavaIHGGKDQedR~~ai~afr~g--kKDVLVATDVAS 482 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGV-EAVAIHGGKDQEDRHYAIEAFRAG--KKDVLVATDVAS 482 (610)
T ss_pred hhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccc-eeEEeecCcchhHHHHHHHHHhcC--CCceEEEecchh
Confidence 1111 11222223323334488899999999988887 788899999999999999999998 889999999999
Q ss_pred ccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 153 MGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 153 ~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
.|+|+| |.+||+++.|. ..+.|+||+||+||.|.. |+.+++-.
T Consensus 483 KGLDFp~iqHVINyDMP~---------eIENYVHRIGRTGRsg~~---GiATTfIN 526 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPE---------EIENYVHRIGRTGRSGKT---GIATTFIN 526 (610)
T ss_pred ccCCCccchhhccCCChH---------HHHHHHHHhcccCCCCCc---ceeeeeec
Confidence 999996 99999999998 999999999999999987 99887743
No 57
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.4e-18 Score=170.69 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=150.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccc------cCC-Ccc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYER------LSP-LVP 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r------~~p-l~~ 76 (414)
++++.++||||++.|.|..+-.+...+-..++..+.+++++.+....++.++... ++.+.+...+- .+. +.+
T Consensus 368 ~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 368 LSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSV 447 (731)
T ss_pred ceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeee
Confidence 5789999999999999998888988888889988999999888888888888753 56555433210 000 011
Q ss_pred cc-------cccccc-cccCCCCEEEEec-HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 LN-------VPLGSF-SNIQTGDCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 ~~-------~~l~~l-~~i~~g~~Iv~fs-r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.. ..+..| .....|+.|+|.| +.++++++..|.-.+. .|+.+||++.+.+|.+++..|+.+ ...||||
T Consensus 448 ~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-~v~llhgdkdqa~rn~~ls~fKkk--~~~Vlva 524 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-NVSLLHGDKDQAERNEVLSKFKKK--RKPVLVA 524 (731)
T ss_pred ccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc-eeeeecCchhhHHHHHHHHHHhhc--CCceEEE
Confidence 11 111111 2234688888886 5578899999988887 999999999999999999999998 8899999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
||++++|+|+| +++||+++.-+ +.+.+.||+||+||.|.+ |..+++..
T Consensus 525 tDvaargldI~~ikTVvnyD~ar---------dIdththrigrtgRag~k---GvayTlvT 573 (731)
T KOG0339|consen 525 TDVAARGLDIPSIKTVVNYDFAR---------DIDTHTHRIGRTGRAGEK---GVAYTLVT 573 (731)
T ss_pred eeHhhcCCCccccceeecccccc---------hhHHHHHHhhhccccccc---ceeeEEec
Confidence 99999999995 99999999887 999999999999999977 77776644
No 58
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.76 E-value=1.6e-18 Score=175.98 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=149.1
Q ss_pred CCcCEEEEecccccCC-CCcchhHHHHHhCCCC-CcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcc-------
Q 015049 6 SDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------- 76 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d-~~rG~~~~~~l~~l~a-~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~------- 76 (414)
.+++++|+||||.+.| ..+.....-++-.||+ +++..|+++-+..+-+.+.+.+.+...|....+.+.|--
T Consensus 166 s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~ 245 (980)
T KOG4284|consen 166 SHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVA 245 (980)
T ss_pred cceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeee
Confidence 5789999999999987 5567778888899997 456667777777777788888877766665555443220
Q ss_pred ----------ccccc----ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCc
Q 015049 77 ----------LNVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 141 (414)
Q Consensus 77 ----------~~~~l----~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~ 141 (414)
+...+ ..++.++-.++|||. +...|+.++..|...|. .|.++.|+|++.+|..+++.++.- .
T Consensus 246 ~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~-d~~~ISgaM~Q~~Rl~a~~~lr~f--~ 322 (980)
T KOG4284|consen 246 KCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGL-DVTFISGAMSQKDRLLAVDQLRAF--R 322 (980)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC-CeEEeccccchhHHHHHHHHhhhc--e
Confidence 00011 122455556677766 78889999999999998 999999999999999999999997 8
Q ss_pred ccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 142 FDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 142 ~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
++|||+||..++|||-+ +..||+.+.|. +-..|.||+|||||+|.. |..+++..
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~---------d~eTY~HRIGRAgRFG~~---G~aVT~~~ 377 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPA---------DEETYFHRIGRAGRFGAH---GAAVTLLE 377 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCc---------chHHHHHHhhhccccccc---ceeEEEec
Confidence 99999999999999984 99999999887 999999999999999987 77665543
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.76 E-value=1e-17 Score=179.33 Aligned_cols=95 Identities=19% Similarity=0.371 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccc
Q 015049 99 HAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 176 (414)
Q Consensus 99 ~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~ 176 (414)
..++.+++.|.+. ...+|+++||+|++++|..+++.|++| +.+|||||+++++|+|+| ++.||+++.++|
T Consensus 467 ~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g--~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~------ 538 (630)
T TIGR00643 467 KAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG--EVDILVATTVIEVGVDVPNATVMVIEDAERF------ 538 (630)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEECceeecCcccCCCcEEEEeCCCcC------
Confidence 5566777777653 233799999999999999999999998 899999999999999997 888998887754
Q ss_pred cCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 177 ~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+.+++.||+|||||.|.. |+|+.+.
T Consensus 539 --gls~lhQ~~GRvGR~g~~---g~~il~~ 563 (630)
T TIGR00643 539 --GLSQLHQLRGRVGRGDHQ---SYCLLVY 563 (630)
T ss_pred --CHHHHHHHhhhcccCCCC---cEEEEEE
Confidence 678999999999999976 8877765
No 60
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=6.3e-18 Score=170.95 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=141.6
Q ss_pred cCCCcCEEEEecccccCCC-CcchhHHHHHhCCCCCcEEE-EecCCChHHHHHHHHHcCCc-eEEeeccccCCCccccc-
Q 015049 4 VVSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDD-VKVQSYERLSPLVPLNV- 79 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~-~rG~~~~~~l~~l~a~~i~l-~g~~~~~~~i~~l~~~~~~~-~~v~~~~r~~pl~~~~~- 79 (414)
-++.+.++|+||++++.++ .+-.++..++.......+++ +.+.+....+++++...-.. ..+....+.+.......
T Consensus 285 dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 285 DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred hhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhh
Confidence 4678999999999999977 45555666676666666655 44455556678888765333 33333333221111100
Q ss_pred ----------cc---ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEE
Q 015049 80 ----------PL---GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 145 (414)
Q Consensus 80 ----------~l---~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VL 145 (414)
.+ +.+...-+.-.+||. |.+.+.+|...|+......++++||..++..|.+.+++|+.| ++.||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g--~IwvL 442 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG--KIWVL 442 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc--CeeEE
Confidence 00 011111122345555 999999999999544334899999999999999999999999 99999
Q ss_pred EEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEE-EecCCCHHHHHH
Q 015049 146 VASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT-CLDSEDLPLLHK 215 (414)
Q Consensus 146 VaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~-~~~~~d~~~l~~ 215 (414)
||||++++|+|+ ++..||+++.|. +..+|+||+||+||.|.. |..+ .+.++|++.++.
T Consensus 443 icTdll~RGiDf~gvn~VInyD~p~---------s~~syihrIGRtgRag~~---g~Aitfytd~d~~~ir~ 502 (593)
T KOG0344|consen 443 ICTDLLARGIDFKGVNLVINYDFPQ---------SDLSYIHRIGRTGRAGRS---GKAITFYTDQDMPRIRS 502 (593)
T ss_pred EehhhhhccccccCcceEEecCCCc---------hhHHHHHHhhccCCCCCC---cceEEEeccccchhhhh
Confidence 999999999999 799999999998 889999999999999986 6554 455567666543
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.76 E-value=1.1e-17 Score=180.39 Aligned_cols=184 Identities=18% Similarity=0.300 Sum_probs=118.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCC-ceE-Eeeccc-cCCCccc----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVK-VQSYER-LSPLVPL---- 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~-~~~-v~~~~r-~~pl~~~---- 77 (414)
+.+++++||||+|.++..+|+. +.......-.+..++++.+....+... ++ ... +..... ..|+...
T Consensus 381 ~~~l~lvVIDE~Hrfg~~qr~~-----l~~~~~~~~iL~~SATp~prtl~~~~~-g~~~~s~i~~~p~~r~~i~~~~~~~ 454 (681)
T PRK10917 381 FHNLGLVIIDEQHRFGVEQRLA-----LREKGENPHVLVMTATPIPRTLAMTAY-GDLDVSVIDELPPGRKPITTVVIPD 454 (681)
T ss_pred hcccceEEEechhhhhHHHHHH-----HHhcCCCCCEEEEeCCCCHHHHHHHHc-CCCceEEEecCCCCCCCcEEEEeCc
Confidence 5789999999999986544433 322222222344445555433333322 32 111 211110 1122210
Q ss_pred ---ccccccc-cccCC-CCEEEEe-c--------HHHHHHHHHHHHHcC-CCeEEEecCCCCHHHHHHHHHHhhCCCCcc
Q 015049 78 ---NVPLGSF-SNIQT-GDCIVTF-S--------RHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEF 142 (414)
Q Consensus 78 ---~~~l~~l-~~i~~-g~~Iv~f-s--------r~~~~~l~~~L~~~~-~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~ 142 (414)
...+..+ ..+.. ++++|++ + ...+..+++.|.+.. ..+++.+||+|++++|..++++|++| ++
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g--~~ 532 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG--EI 532 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC--CC
Confidence 0000111 11223 3555544 2 345667777777542 24799999999999999999999998 89
Q ss_pred cEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 143 DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 143 ~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+|||||+++++|+|+| ++.||+++.+.| ..+++.||+||+||.|.. |+|+.+..
T Consensus 533 ~ILVaT~vie~GiDip~v~~VIi~~~~r~--------gls~lhQ~~GRvGR~g~~---g~~ill~~ 587 (681)
T PRK10917 533 DILVATTVIEVGVDVPNATVMVIENAERF--------GLAQLHQLRGRVGRGAAQ---SYCVLLYK 587 (681)
T ss_pred CEEEECcceeeCcccCCCcEEEEeCCCCC--------CHHHHHHHhhcccCCCCc---eEEEEEEC
Confidence 9999999999999997 899999988764 678999999999999976 88887753
No 62
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.76 E-value=2.2e-18 Score=168.07 Aligned_cols=197 Identities=20% Similarity=0.217 Sum_probs=136.9
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCC-----cE--EEEecCCChHHHHHHHHHcCCceEEeeccccC-------
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-----EL--HLCGDPAAVPLIQQILQVTGDDVKVQSYERLS------- 72 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~-----~i--~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~------- 72 (414)
.+.++|+||||+++ +||+.+..-++.|-+. .+ ..+.++++...-++++..+.-.-.|..++.++
T Consensus 141 ~L~Y~vVDEAHCVS--QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFY 218 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVS--QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFY 218 (641)
T ss_pred eeeeEEechhhhHh--hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhH
Confidence 46899999999998 9999998877665321 11 12233333344455555432111111111111
Q ss_pred ----------CCccc----ccccccc---cccC---CCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHH
Q 015049 73 ----------PLVPL----NVPLGSF---SNIQ---TGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 131 (414)
Q Consensus 73 ----------pl~~~----~~~l~~l---~~i~---~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~ 131 (414)
++..+ .+.|++- ++-+ .|--|| |-||+.|++++-.|+..|+ ++..+|+||...+|.++
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEV 297 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHH
Confidence 11111 1111111 1111 233466 5599999999999999998 78889999999999999
Q ss_pred HHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCC
Q 015049 132 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSED 209 (414)
Q Consensus 132 ~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d 209 (414)
.+.|-++ +..|++||..+|||+|-| |+.||++++++ +..-|.|..|||||.|.. .+|-.+ ..+|
T Consensus 298 Qe~WM~~--~~PvI~AT~SFGMGVDKp~VRFViHW~~~q---------n~AgYYQESGRAGRDGk~---SyCRLYYsR~D 363 (641)
T KOG0352|consen 298 QEKWMNN--EIPVIAATVSFGMGVDKPDVRFVIHWSPSQ---------NLAGYYQESGRAGRDGKR---SYCRLYYSRQD 363 (641)
T ss_pred HHHHhcC--CCCEEEEEeccccccCCcceeEEEecCchh---------hhHHHHHhccccccCCCc---cceeeeecccc
Confidence 9999998 999999999999999985 99999999999 999999999999999987 777654 4556
Q ss_pred HHHHHHhhCCC
Q 015049 210 LPLLHKSLLEP 220 (414)
Q Consensus 210 ~~~l~~~l~~~ 220 (414)
...++-.+.++
T Consensus 364 ~~~i~FLi~~e 374 (641)
T KOG0352|consen 364 KNALNFLVSGE 374 (641)
T ss_pred hHHHHHHHhhH
Confidence 66555444443
No 63
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=2e-17 Score=178.08 Aligned_cols=282 Identities=19% Similarity=0.195 Sum_probs=192.0
Q ss_pred CCcCCCcCEEEEecccccC-CCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc--
Q 015049 2 ADVVSDYDCAVIDEIQMLG-CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN-- 78 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~-d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~-- 78 (414)
.++++.|++|||||+|+-+ +.+.+-.+..-++......+.++-.+++.+ .+++.+.+++.-.++...|.-|++...
T Consensus 157 D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld-~~rfs~~f~~apvi~i~GR~fPVei~Y~~ 235 (845)
T COG1643 157 DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD-AERFSAYFGNAPVIEIEGRTYPVEIRYLP 235 (845)
T ss_pred CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC-HHHHHHHcCCCCEEEecCCccceEEEecC
Confidence 5788999999999999874 223333333222222222355555555554 466777666544444444444444211
Q ss_pred -----c--------ccccccccCCCCEEEEe-cHHHHHHHHHHHHH--cC-CCeEEEecCCCCHHHHHHHHHHhhCCCCc
Q 015049 79 -----V--------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIES--RG-KHLCSIVYGSLPPETRTRQATRFNDASSE 141 (414)
Q Consensus 79 -----~--------~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~--~~-~~~v~~ihg~L~~e~R~~~~~~F~~g~~~ 141 (414)
. .+.....-..|+++||+ ...+++.+++.|++ .+ ...+..+||.||+++..++++--..| +
T Consensus 236 ~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~--~ 313 (845)
T COG1643 236 EAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG--K 313 (845)
T ss_pred CCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC--c
Confidence 0 01112233589999998 79999999999987 22 23678889999999998888777765 5
Q ss_pred ccEEEEcCcccccccCC-ccEEEEcccc---ccCC---c---ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHH
Q 015049 142 FDVLVASDAIGMGLNLN-ISRIIFSTMK---KFDG---V---ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 211 (414)
Q Consensus 142 ~~VLVaTdal~~Glnl~-i~~VI~~~~~---k~dg---~---~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~ 211 (414)
.+|++|||+++.+|+|| |+.||..+.. .||. . ...++|.++..||+|||||.+ .|.|+-+..++..
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~----pGicyRLyse~~~ 389 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG----PGICYRLYSEEDF 389 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC----CceEEEecCHHHH
Confidence 67999999999999995 9999987754 4663 2 256889999999999999977 4999988775422
Q ss_pred HHHHhhCCCCcccccCCCCCCHHHHHHHHh-----------cCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhh
Q 015049 212 LLHKSLLEPSPMLESAGLFPNFDLIYMYSR-----------LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVI 280 (414)
Q Consensus 212 ~l~~~l~~~~~~i~~~~i~p~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 280 (414)
..+.....++|....+....-.+..+.. .++...+...++.+..+..++..-.+ ..+...|
T Consensus 390 --~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~L------T~lG~~m 461 (845)
T COG1643 390 --LAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKL------TPLGKQM 461 (845)
T ss_pred --HhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCC------CHHHHHH
Confidence 2555556666666666555444444432 25667888899999999888766543 3556667
Q ss_pred ccCCCCHHHHHHhhcccC
Q 015049 281 DQLPLRLHEKYLFCISPV 298 (414)
Q Consensus 281 ~~~~l~~~~~~~~~~~p~ 298 (414)
..++++++.--.++.++.
T Consensus 462 s~lpldprLA~mLl~a~~ 479 (845)
T COG1643 462 SLLPLDPRLARMLLTAPE 479 (845)
T ss_pred HhCCCChHHHHHHHhccc
Confidence 777777776666666665
No 64
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.3e-17 Score=167.04 Aligned_cols=275 Identities=19% Similarity=0.238 Sum_probs=185.1
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCCC------CcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcc
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 76 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a------~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~ 76 (414)
+.+..|+|+||||||.-.-. +++|.||-. ..+.++-++++.+ .+++...+++.-.+....|.-|++.
T Consensus 374 pdLasYSViiiDEAHERTL~------TDILfgLvKDIar~RpdLKllIsSAT~D-AekFS~fFDdapIF~iPGRRyPVdi 446 (902)
T KOG0923|consen 374 PDLASYSVIIVDEAHERTLH------TDILFGLVKDIARFRPDLKLLISSATMD-AEKFSAFFDDAPIFRIPGRRYPVDI 446 (902)
T ss_pred ccccceeEEEeehhhhhhhh------hhHHHHHHHHHHhhCCcceEEeeccccC-HHHHHHhccCCcEEeccCcccceee
Confidence 56789999999999986422 666766621 3455555555554 4667777666544444445555442
Q ss_pred ----------ccccccccccc----CCCCEEEEe-cHHHHHHHHHHHHH----cCC----CeEEEecCCCCHHHHHHHHH
Q 015049 77 ----------LNVPLGSFSNI----QTGDCIVTF-SRHAIYRLKKAIES----RGK----HLCSIVYGSLPPETRTRQAT 133 (414)
Q Consensus 77 ----------~~~~l~~l~~i----~~g~~Iv~f-sr~~~~~l~~~L~~----~~~----~~v~~ihg~L~~e~R~~~~~ 133 (414)
+...+..+..+ ..||++||. ...+++...+.|.. .|. .-++.+|+.||.+.+..+++
T Consensus 447 ~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFe 526 (902)
T KOG0923|consen 447 FYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFE 526 (902)
T ss_pred ecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcC
Confidence 22222222222 368999998 58888877777654 221 14788999999999999998
Q ss_pred HhhCCCCcccEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEE
Q 015049 134 RFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 203 (414)
Q Consensus 134 ~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~ 203 (414)
.--.| ..+|++|||+++..|.|+ |.+||.-+..| |+.+ ...|+|.++..||+|||||.|. |.|+
T Consensus 527 PtP~g--aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP----GKCf 600 (902)
T KOG0923|consen 527 PTPPG--ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP----GKCF 600 (902)
T ss_pred CCCCC--ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC----CceE
Confidence 88777 789999999999999995 99999877666 4432 2467899999999999999884 7887
Q ss_pred EecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHH----------HhcCCCchHHHHHHHHHHhcccCCCccccCHHHH
Q 015049 204 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY----------SRLHPDSSLYGILEHFLENAKLSENYFFANCEEV 273 (414)
Q Consensus 204 ~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 273 (414)
.+.. -..+....-..+.+.|.+.++....-.|..+ ...+|..+|-..|+.++.+.+++.... +
T Consensus 601 RLYt-~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~Ge------L 673 (902)
T KOG0923|consen 601 RLYT-AWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGE------L 673 (902)
T ss_pred Eeec-hhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccc------h
Confidence 7654 2233344334455667666664443333332 233677888899999999888776543 4
Q ss_pred HHHHHhhccCCCCHHHHHHhhccc
Q 015049 274 LKVATVIDQLPLRLHEKYLFCISP 297 (414)
Q Consensus 274 ~~~~~~l~~~~l~~~~~~~~~~~p 297 (414)
.++...|..+|.++...-.++.+-
T Consensus 674 Tk~GrrMaEfP~dPmlsKmi~as~ 697 (902)
T KOG0923|consen 674 TKLGRRMAEFPVDPMLSKMIVASE 697 (902)
T ss_pred hhhhhhhhhcCCCHHHHhHHhhhc
Confidence 566777777777665544444443
No 65
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=99.73 E-value=7.2e-18 Score=119.16 Aligned_cols=49 Identities=59% Similarity=0.931 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 015049 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390 (414)
Q Consensus 342 l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~ 390 (414)
|..||++|+++++|+|||+|||++|||.+.|.++|..|+..|++.|+++
T Consensus 1 L~~LE~~hk~l~lYlWLs~Rfp~~F~d~e~a~~~k~~~~~~I~~~L~~~ 49 (49)
T PF12513_consen 1 LQRLESLHKVLDLYLWLSYRFPDVFPDRELAEELKKRVEEKIEEGLERI 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-TTTSTTHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999864
No 66
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=6.1e-17 Score=161.80 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=129.6
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCC-------------CCCcEEEEecCCChHHHHHHHHHc-CCceEEeecc-
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-------------CANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYE- 69 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l-------------~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~- 69 (414)
.+++.++|+||+|.|.|-+++..++.++..+ +...+++.-+++..+-+.++++.. .+.+.+...+
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKS 364 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccch
Confidence 3568999999999999999999999887544 112334444455556677777643 3333332000
Q ss_pred ------------------ccCCCcccc----------------------ccc-ccccccCCCCEEEEe-cHHHHHHHHHH
Q 015049 70 ------------------RLSPLVPLN----------------------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKA 107 (414)
Q Consensus 70 ------------------r~~pl~~~~----------------------~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~ 107 (414)
--.+++... ..+ ...+.-.....|||| +.+.++.-...
T Consensus 365 ~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~l 444 (708)
T KOG0348|consen 365 HSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSL 444 (708)
T ss_pred hhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHH
Confidence 000111000 000 001111233568888 56667654444
Q ss_pred HHHc---------------C------CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 108 IESR---------------G------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 108 L~~~---------------~------~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
+.+. | ..++--+||+|.+++|..++..|... +--||.|||++++|+|+| |+.||.|
T Consensus 445 f~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~--~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 445 FSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS--RRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc--cceEEEehhhhhccCCCCCcCeEEEe
Confidence 4320 0 12455679999999999999999986 556999999999999997 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHH
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH 214 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~ 214 (414)
+.|. ++.+|+||+||+.|.|.+ |.. +.++.+.+.++++
T Consensus 523 d~P~---------s~adylHRvGRTARaG~k-G~a-lLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 523 DPPF---------STADYLHRVGRTARAGEK-GEA-LLFLLPSEAEYVN 560 (708)
T ss_pred CCCC---------CHHHHHHHhhhhhhccCC-Cce-EEEecccHHHHHH
Confidence 9887 999999999999999987 322 3445565655443
No 67
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.1e-16 Score=154.95 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=138.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC-CceEEeecc--------ccCCCc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKVQSYE--------RLSPLV 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~-~~~~v~~~~--------r~~pl~ 75 (414)
...++++|+||++++..-++--.+..++..++.+-..+..+++....+..+.+... +...+...+ +..+..
T Consensus 167 ~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~ 246 (397)
T KOG0327|consen 167 TDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYIN 246 (397)
T ss_pred ccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeee
Confidence 34589999999999984444455777777787654445555555555555555433 333322111 111111
Q ss_pred cccc----ccccccccCCCCE-EEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 76 PLNV----PLGSFSNIQTGDC-IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 76 ~~~~----~l~~l~~i~~g~~-Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
+... ++..+-+ ...+. ++|+|++.+..+...|...+. .++++||.+.+.+|..+.+.|+.| ..+|||+||.
T Consensus 247 v~k~~k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~-~~s~~~~d~~q~~R~~~~~ef~~g--ssrvlIttdl 322 (397)
T KOG0327|consen 247 VEKEEKLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGF-TVSAIHGDMEQNERDTLMREFRSG--SSRVLITTDL 322 (397)
T ss_pred ccccccccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCc-eEEEeecccchhhhhHHHHHhhcC--CceEEeeccc
Confidence 1111 1111112 23344 445599999999999988887 899999999999999999999999 7799999999
Q ss_pred ccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC-CHHHHH
Q 015049 151 IGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLH 214 (414)
Q Consensus 151 l~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~-d~~~l~ 214 (414)
+++|+|+ .+..||.+..|. ....|.||+||+||+|.+ |.++.+..+ |...++
T Consensus 323 ~argidv~~~slvinydlP~---------~~~~yihR~gr~gr~grk---g~~in~v~~~d~~~lk 376 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPA---------RKENYIHRIGRAGRFGRK---GVAINFVTEEDVRDLK 376 (397)
T ss_pred cccccchhhcceeeeecccc---------chhhhhhhcccccccCCC---ceeeeeehHhhHHHHH
Confidence 9999999 799999999997 899999999999999987 887766443 444443
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.70 E-value=3.4e-16 Score=168.40 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=116.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCC--CC----CcEEEEecCCChHHHHHHHHHc-CCceEEeec-cccCC---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CA----NELHLCGDPAAVPLIQQILQVT-GDDVKVQSY-ERLSP--- 73 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a----~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~-~r~~p--- 73 (414)
+.++.++|+|||| .++.+...+..++..+ +. .++.+++++.+ ..+..+...+ .+...+... ++.+.
T Consensus 169 L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p-~ei~~l~~~~~~~p~~i~V~~~~l~a~ki 245 (844)
T TIGR02621 169 LGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR-TDGPDRTTLLSAEDYKHPVLKKRLAAKKI 245 (844)
T ss_pred hccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCC-ccHHHHHHHHccCCceeecccccccccce
Confidence 5889999999999 4456666666666643 32 23444444433 3344444332 222221111 11110
Q ss_pred Ccc---ccc-----cccc---ccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHH-----HHHHHhh
Q 015049 74 LVP---LNV-----PLGS---FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT-----RQATRFN 136 (414)
Q Consensus 74 l~~---~~~-----~l~~---l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~-----~~~~~F~ 136 (414)
..+ ... .+.. +.....+.+|||+ |++.+..+++.|.+.+. ..+||+|++.+|. .+++.|+
T Consensus 246 ~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 000 000 0000 1112345666655 99999999999987664 7899999999999 7889998
Q ss_pred C----CC-----CcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 137 D----AS-----SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 137 ~----g~-----~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+ |. .+.+||||||++++|||++.+.||+.. . +.++|+||+||+||.|.. +.+.++.+
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~-a----------P~esyIQRiGRtgR~G~~-~~~~i~vv 388 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDL-A----------PFESMQQRFGRVNRFGEL-QACQIAVV 388 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCcceEEECC-C----------CHHHHHHHhcccCCCCCC-CCceEEEE
Confidence 7 41 126899999999999999988887643 2 568999999999999985 33434443
No 69
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.70 E-value=6.8e-17 Score=158.26 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=137.8
Q ss_pred cCCCcCEEEEecccccCCCCcch--hHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEe--eccccCC--Cc-
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGF--SFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQ--SYERLSP--LV- 75 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~--~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~--~~~r~~p--l~- 75 (414)
.+..++++|+||||.+. .+|+ .+..+...+|..-..+.-+++..+.+..+.+.+ ..++.+. ..+-+.| +.
T Consensus 167 ~~~~l~~LVvDEADLll--sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Q 244 (569)
T KOG0346|consen 167 YLDSLSFLVVDEADLLL--SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQ 244 (569)
T ss_pred hhhheeeEEechhhhhh--hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceE
Confidence 45678999999999998 5555 477777888865555666666667777777754 3333333 2222221 11
Q ss_pred --c----ccccc-----ccccccCCCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCccc
Q 015049 76 --P----LNVPL-----GSFSNIQTGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 143 (414)
Q Consensus 76 --~----~~~~l-----~~l~~i~~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~ 143 (414)
+ .++.+ -.+.-+ .|..|+ ++|-+.|+++.-.|++.|+ +.+++.|.||...|..+.++||.| -++
T Consensus 245 y~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGi-ksciLNseLP~NSR~Hii~QFNkG--~Yd 320 (569)
T KOG0346|consen 245 YQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGI-KSCILNSELPANSRCHIIEQFNKG--LYD 320 (569)
T ss_pred EEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCc-HhhhhcccccccchhhHHHHhhCc--cee
Confidence 1 01111 112223 555555 4599999999999999999 888999999999999999999998 999
Q ss_pred EEEEcC-----------------------------------cccccccC-CccEEEEccccccCCcccccCCHHHHHhhh
Q 015049 144 VLVASD-----------------------------------AIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIA 187 (414)
Q Consensus 144 VLVaTd-----------------------------------al~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~Qra 187 (414)
++|||| -+.+|||+ .|..||+.+.|. ++..|+||+
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~---------t~~sYIHRv 391 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE---------TVTSYIHRV 391 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC---------chHHHHHhc
Confidence 999999 26799999 699999999998 999999999
Q ss_pred cccCCCCCCCCceEEEEe
Q 015049 188 GRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 188 GRAGR~g~~~~~G~v~~~ 205 (414)
||+||.+.. |.+..+
T Consensus 392 GRTaRg~n~---GtalSf 406 (569)
T KOG0346|consen 392 GRTARGNNK---GTALSF 406 (569)
T ss_pred cccccCCCC---CceEEE
Confidence 999999976 666554
No 70
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.7e-16 Score=162.13 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=176.0
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCc
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 75 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~ 75 (414)
...+.+|++||+||||+-+-+ +++++|+- ...+.++-.+++.+ .+++++.+|..-.+.-..|.-|+.
T Consensus 463 d~~L~kYSviImDEAHERslN------tDilfGllk~~larRrdlKliVtSATm~-a~kf~nfFgn~p~f~IpGRTyPV~ 535 (1042)
T KOG0924|consen 463 DRDLDKYSVIIMDEAHERSLN------TDILFGLLKKVLARRRDLKLIVTSATMD-AQKFSNFFGNCPQFTIPGRTYPVE 535 (1042)
T ss_pred hhhhhheeEEEechhhhcccc------hHHHHHHHHHHHHhhccceEEEeecccc-HHHHHHHhCCCceeeecCCccceE
Confidence 346788999999999987633 56666652 23455555555544 678888887443333333444433
Q ss_pred c--cccccc------------cccccCCCCEEEEe-cHHHHHH----HHHHHHHc---C--CCeEEEecCCCCHHHHHHH
Q 015049 76 P--LNVPLG------------SFSNIQTGDCIVTF-SRHAIYR----LKKAIESR---G--KHLCSIVYGSLPPETRTRQ 131 (414)
Q Consensus 76 ~--~~~~l~------------~l~~i~~g~~Iv~f-sr~~~~~----l~~~L~~~---~--~~~v~~ihg~L~~e~R~~~ 131 (414)
. ...+.. ....-.+||++||. .+.+++. ++..|.+. + ...+-.+|+.||.+.+.++
T Consensus 536 ~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 536 IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh
Confidence 2 111111 11123479999988 4666654 44444432 1 2368889999999988888
Q ss_pred HHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccc---cC---C---cccccCCHHHHHhhhcccCCCCCCCCceE
Q 015049 132 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FD---G---VELRDLTVPEVKQIAGRAGRYGSKFPVGE 201 (414)
Q Consensus 132 ~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~d---g---~~~~~ls~~~~~QraGRAGR~g~~~~~G~ 201 (414)
+..-..| ..+++|||++++..|.+| |.+||..+..| |+ | -...|+|..+..||+|||||.|- |.
T Consensus 616 Fq~a~~~--vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p----G~ 689 (1042)
T KOG0924|consen 616 FQKAEGG--VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP----GT 689 (1042)
T ss_pred cccCCCC--ceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC----cc
Confidence 7777666 889999999999999996 99999988766 44 2 24578999999999999999883 88
Q ss_pred EEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccCHH
Q 015049 202 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFANCE 271 (414)
Q Consensus 202 v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 271 (414)
|+.++.++ .+..+++..+.++|.+.++....-.|..+. ..+|+..+...+-.+..+.+++..-
T Consensus 690 cYRlYTe~-ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g------ 762 (1042)
T KOG0924|consen 690 CYRLYTED-AYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTG------ 762 (1042)
T ss_pred eeeehhhh-HHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCC------
Confidence 88887644 567888888888888877755444444322 1244445555555555555544432
Q ss_pred HHHHHHHhhccCCCCHHH
Q 015049 272 EVLKVATVIDQLPLRLHE 289 (414)
Q Consensus 272 ~~~~~~~~l~~~~l~~~~ 289 (414)
.+..+...|..++|.+..
T Consensus 763 ~LT~lG~~MvefpLDP~l 780 (1042)
T KOG0924|consen 763 QLTPLGRKMVEFPLDPPL 780 (1042)
T ss_pred ccchhhHHhhhCCCCchH
Confidence 233455666667776543
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.68 E-value=5.7e-16 Score=161.76 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc-CcccccccCC-ccEEEEcc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT-dal~~Glnl~-i~~VI~~~ 166 (414)
+..+|+| +.++++.+++.|.+.+. ++.++||++++++|..+.+.|++| +..||||| +.+++|+|+| ++.||+..
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~-~v~~i~G~~~~~eR~~i~~~~~~~--~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYD-KVYYVSGEVDTEDRNEMKKIAEGG--KGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHhCC--CCeEEEEEcceeccccccccccEEEEec
Confidence 3455555 88899999999999887 899999999999999999999987 77899998 8999999996 99999998
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.++ +...|+||+||+||.+.+.+...|+-+.
T Consensus 422 p~~---------s~~~~~QriGR~~R~~~~K~~~~i~D~v 452 (501)
T PHA02558 422 PSK---------SKIIVLQSIGRVLRKHGSKSIATVWDII 452 (501)
T ss_pred CCc---------chhhhhhhhhccccCCCCCceEEEEEee
Confidence 887 8889999999999998652333444443
No 72
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.68 E-value=1.6e-16 Score=123.69 Aligned_cols=77 Identities=35% Similarity=0.558 Sum_probs=71.7
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHH
Q 015049 106 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVK 184 (414)
Q Consensus 106 ~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~ 184 (414)
+.|+..+. ++..+||++++++|..+++.|+++ ..+|||||+++++|+|+| ++.||+++.+. +..+|.
T Consensus 1 ~~L~~~~~-~~~~i~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~Gid~~~~~~vi~~~~~~---------~~~~~~ 68 (78)
T PF00271_consen 1 KFLEKKGI-KVAIIHGDMSQKERQEILKKFNSG--EIRVLIATDILGEGIDLPDASHVIFYDPPW---------SPEEYI 68 (78)
T ss_dssp HHHHHTTS-SEEEESTTSHHHHHHHHHHHHHTT--SSSEEEESCGGTTSSTSTTESEEEESSSES---------SHHHHH
T ss_pred CChHHCCC-cEEEEECCCCHHHHHHHHHHhhcc--CceEEEeeccccccccccccccccccccCC---------CHHHHH
Confidence 35777787 999999999999999999999998 779999999999999996 99999999887 999999
Q ss_pred hhhcccCCCC
Q 015049 185 QIAGRAGRYG 194 (414)
Q Consensus 185 QraGRAGR~g 194 (414)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999987
No 73
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.65 E-value=7.1e-16 Score=154.68 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=97.3
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
.+|..|||+ |-..+.+++-.|...++ ....+|+.|.+..|..-+++|++. .--||||||+++||+||| |.+||||
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i-~p~~LHA~M~QKqRLknLEkF~~~--~~~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDI-PPLPLHASMIQKQRLKNLEKFKQS--PSGVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCC-CCchhhHHHHHHHHHHhHHHHhcC--CCeEEEeehhhhccCCCCCcceEEEe
Confidence 477776654 99999999999998887 778899999999999999999997 567999999999999997 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEE-EEecCCCHHHHHH
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV-TCLDSEDLPLLHK 215 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v-~~~~~~d~~~l~~ 215 (414)
..|+ +.+-|+||.||+.|++++ |+- ....+.++..+++
T Consensus 539 qVPr---------tseiYVHRSGRTARA~~~---Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 539 QVPR---------TSEIYVHRSGRTARANSE---GVSVMLCGPQEVGPLKK 577 (731)
T ss_pred ecCC---------ccceeEecccccccccCC---CeEEEEeChHHhHHHHH
Confidence 9999 999999999999999987 654 3446666655433
No 74
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=1e-16 Score=159.20 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=94.5
Q ss_pred CEEEEe--cHHHHHHHHHHHH-HcC--CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEE
Q 015049 91 DCIVTF--SRHAIYRLKKAIE-SRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 91 ~~Iv~f--sr~~~~~l~~~L~-~~~--~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
.-++|| |...+.+++..|. ..+ ..++..+.|+|+...|....+.|+.| ++++|||||+++||+|+ +|+.||+
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g--~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG--DINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC--CceEEEehhhhhcCCcccccceEee
Confidence 334455 7888888888876 222 22567789999999999999999999 99999999999999999 6999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHHhhCCC
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLLEP 220 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~~l~~~ 220 (414)
|+.|. +...|+||+||+||+|.. |+++++ ...+...+.+.++..
T Consensus 508 Yd~P~---------~~ktyVHR~GRTARAgq~---G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 508 YDPPA---------SDKTYVHRAGRTARAGQD---GYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred cCCCc---------hhhHHHHhhcccccccCC---ceEEEeeccccchHHHHHHHHh
Confidence 99987 899999999999999987 887765 455555555555543
No 75
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.63 E-value=7.1e-16 Score=148.62 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=112.7
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCC-----CCCcEEEEecCCC-----hHHHHHHHHHcCCceEE-eeccccCCC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGI-----CANELHLCGDPAA-----VPLIQQILQVTGDDVKV-QSYERLSPL 74 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l-----~a~~i~l~g~~~~-----~~~i~~l~~~~~~~~~v-~~~~r~~pl 74 (414)
..+.++-|||+|+.+ +||+.+..-+..+ ..+...++|.+++ .+..+++.-. ...+.+ ..+.|+. |
T Consensus 214 ~~~~~iaidevhccs--qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~i-e~~~tf~a~fnr~n-l 289 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCS--QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCI-EAAFTFRAGFNRPN-L 289 (695)
T ss_pred ceeEEEeecceeehh--hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhH-HhhheeecccCCCC-c
Confidence 357889999999998 9999877543222 1122334443322 2223333221 111222 2233332 1
Q ss_pred c--cc------ccccccc----cccCCCC--EEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCC
Q 015049 75 V--PL------NVPLGSF----SNIQTGD--CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 140 (414)
Q Consensus 75 ~--~~------~~~l~~l----~~i~~g~--~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~ 140 (414)
. +. ...+..+ +.--.|+ +|.|||+++++.++..|...|+ .+..+|+.|.|++|...-+.|..|
T Consensus 290 ~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi-~a~~yha~lep~dks~~hq~w~a~-- 366 (695)
T KOG0353|consen 290 KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI-HAGAYHANLEPEDKSGAHQGWIAG-- 366 (695)
T ss_pred eeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc-cccccccccCcccccccccccccc--
Confidence 1 11 1111111 1111232 5669999999999999999998 889999999999999999999998
Q ss_pred cccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHh
Q 015049 141 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 185 (414)
Q Consensus 141 ~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~Q 185 (414)
+++|+|||-++|||||-| ++.||+.++|| +.+.|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl~k---------sienyyq 403 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSLPK---------SIENYYQ 403 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEecccch---------hHHHHHH
Confidence 999999999999999986 99999999999 9999999
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62 E-value=6.8e-15 Score=147.32 Aligned_cols=84 Identities=21% Similarity=0.416 Sum_probs=69.9
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~ 166 (414)
.+.++||+ |++.++.+++.|++.+. ..+..+||.++++.|.+. + +.+||||||++++|||+|...||+ .
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~--~~~iLVaTdv~~rGiDi~~~~vi~-~ 342 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------M--QFDILLGTSTVDVGVDFKRDWLIF-S 342 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------c--cCCEEEEecHHhcccCCCCceEEE-C
Confidence 45677766 99999999999997653 268889999999988653 3 568999999999999998767774 3
Q ss_pred ccccCCcccccCCHHHHHhhhcccC
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAG 191 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAG 191 (414)
|. +.++|+||+||+|
T Consensus 343 -p~---------~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -AR---------DAAAFWQRLGRLG 357 (357)
T ss_pred -CC---------CHHHHhhhcccCC
Confidence 55 8999999999998
No 77
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=1.7e-14 Score=122.18 Aligned_cols=101 Identities=28% Similarity=0.391 Sum_probs=89.8
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
.+.+||++ +++.++.+++.|.+.+. ++.++||++++.+|..+.+.|+++ ..++|++|+++++|+|+| ++.||+.+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~ili~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGSQEEREEVLKDFREG--EIVVLVATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHHHcC--CCcEEEEcChhhcCcChhhCCEEEEeC
Confidence 45567766 89999999999988666 899999999999999999999998 789999999999999997 99999999
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~ 204 (414)
.+. +..++.|++||+||.|.. |.+..
T Consensus 105 ~~~---------~~~~~~Q~~GR~~R~~~~---~~~~~ 130 (131)
T cd00079 105 LPW---------SPSSYLQRIGRAGRAGQK---GTAIL 130 (131)
T ss_pred CCC---------CHHHheecccccccCCCC---ceEEe
Confidence 876 999999999999999964 66554
No 78
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=155.75 Aligned_cols=187 Identities=16% Similarity=0.209 Sum_probs=139.2
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccC-----C--Cccc
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS-----P--LVPL 77 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~-----p--l~~~ 77 (414)
.++-++|+||+|.+.|..+-+..+.++..++....++.++.+-...++.++... ..++.+....+-+ . +.+.
T Consensus 514 rR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~ 593 (997)
T KOG0334|consen 514 RRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVC 593 (997)
T ss_pred cccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEe
Confidence 456699999999999998989999988888877776766665555566666543 1222222111110 0 0010
Q ss_pred c-c------ccccc-cccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 78 N-V------PLGSF-SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 78 ~-~------~l~~l-~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
. + .+..+ .....+++|||+ +...|..+.+.|.+.|. .|..+||+.|+.+|...++.|+++ .+++||||
T Consensus 594 ~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~-~~~slHGgv~q~dR~sti~dfK~~--~~~LLvaT 670 (997)
T KOG0334|consen 594 AIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY-NCDSLHGGVDQHDRSSTIEDFKNG--VVNLLVAT 670 (997)
T ss_pred cCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc-chhhhcCCCchHHHHhHHHHHhcc--CceEEEeh
Confidence 0 0 00001 011267888888 78899999999998887 777799999999999999999998 99999999
Q ss_pred CcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 149 DAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 149 dal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+.+++|+|+ .+..||+++.|. ...+|.||+||+||.|.. |.+++|..
T Consensus 671 svvarGLdv~~l~Lvvnyd~pn---------h~edyvhR~gRTgragrk---g~AvtFi~ 718 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPN---------HYEDYVHRVGRTGRAGRK---GAAVTFIT 718 (997)
T ss_pred hhhhcccccccceEEEEcccch---------hHHHHHHHhcccccCCcc---ceeEEEeC
Confidence 999999999 599999999998 888899999999999987 66555533
No 79
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=4.4e-15 Score=145.06 Aligned_cols=197 Identities=21% Similarity=0.212 Sum_probs=139.2
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEec-CCChHHHHHHHHHcCCceEEe--eccccCCCc-c---
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD-PAAVPLIQQILQVTGDDVKVQ--SYERLSPLV-P--- 76 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~-~~~~~~i~~l~~~~~~~~~v~--~~~r~~pl~-~--- 76 (414)
-++.+++||+||++.|....|...++..+..+|....++..+ +-+..++.....-.-++..|. ...+.++.. +
T Consensus 161 ~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 161 TLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred cccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhhee
Confidence 467899999999999995555566889999998655555444 444444443333223333332 111222111 0
Q ss_pred -------cccccccccc-cCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 -------LNVPLGSFSN-IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 -------~~~~l~~l~~-i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
....+..+.. ++..+.++|. |+..++.+...|...|. .+..+||+|.++.|......|+.+ +..+||.
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~-~~s~iysslD~~aRk~~~~~F~~~--k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG-EGSDIYSSLDQEARKINGRDFRGR--KTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCC-CccccccccChHhhhhccccccCC--ccceEEE
Confidence 0001111111 2233456655 99999999999999998 899999999999999999999998 8899999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHH
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHK 215 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~ 215 (414)
||++++|+|+| .+.||+++.|. +..-|+||+||+.|.|.. |+.+.+ .+++.+++-.
T Consensus 318 TdvaaRG~diplldnvinyd~p~---------~~klFvhRVgr~aragrt---g~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPP---------DDKLFVHRVGRVARAGRT---GRAYSLVASTDDPYLLD 375 (529)
T ss_pred ehhhhccCCCccccccccccCCC---------CCceEEEEecchhhcccc---ceEEEEEecccchhhhh
Confidence 99999999998 99999999986 778899999999999976 555543 3445555533
No 80
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.54 E-value=4.6e-14 Score=149.24 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=87.1
Q ss_pred eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCC
Q 015049 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194 (414)
Q Consensus 115 ~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g 194 (414)
++++||++|....|..++-.|+.| .+.||+||.+++.|||+|+++|||.+..- .+++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g--~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQG--HLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcC--ceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 678999999999999999999999 99999999999999999999999998764 679999999999999999
Q ss_pred CCCCceEEEEecCCCHHHHHHhhCCCCccccc
Q 015049 195 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 226 (414)
Q Consensus 195 ~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~ 226 (414)
.+ .-|-|+.+.- -...+++.+......|+-
T Consensus 1035 FD-~lGnV~Fmgi-P~~kv~rLlts~L~diqG 1064 (1330)
T KOG0949|consen 1035 FD-TLGNVVFMGI-PRQKVQRLLTSLLPDIQG 1064 (1330)
T ss_pred cc-cccceEEEeC-cHHHHHHHHHHhhhcccC
Confidence 87 6688888754 345666777666665553
No 81
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=3.7e-14 Score=110.07 Aligned_cols=80 Identities=30% Similarity=0.444 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHH
Q 015049 103 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 181 (414)
Q Consensus 103 ~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~ 181 (414)
.++..|...+. ++.++||++++++|..+.+.|+++ ..++||+|++++.|+|+| ++.||+++.+. +..
T Consensus 2 ~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~---------~~~ 69 (82)
T smart00490 2 ELAELLKELGI-KVARLHGGLSQEEREEILEKFNNG--KIKVLVATDVAERGLDLPGVDLVIIYDLPW---------SPA 69 (82)
T ss_pred HHHHHHHHCCC-eEEEEECCCCHHHHHHHHHHHHcC--CCeEEEECChhhCCcChhcCCEEEEeCCCC---------CHH
Confidence 35667777776 899999999999999999999998 779999999999999997 99999999876 999
Q ss_pred HHHhhhcccCCCC
Q 015049 182 EVKQIAGRAGRYG 194 (414)
Q Consensus 182 ~~~QraGRAGR~g 194 (414)
+|.|++||+||.|
T Consensus 70 ~~~Q~~gR~~R~g 82 (82)
T smart00490 70 SYIQRIGRAGRAG 82 (82)
T ss_pred HHHHhhcccccCC
Confidence 9999999999976
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.53 E-value=4e-14 Score=155.59 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=87.9
Q ss_pred CCCEEEEe-cHHHHHHHHHHHH-HcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIE-SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~-~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
...+|||+ ++..+..+.+.|+ ..|. +++++||++++.+|.++++.|+++++..+|||||++.++|+|++ +++||++
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi-~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGI-RAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCe-eEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 44566655 9999999999995 4566 89999999999999999999998644789999999999999995 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+.|. ++..|.||+||+||.|+.
T Consensus 572 DlP~---------nP~~~eQRIGR~~RiGQ~ 593 (956)
T PRK04914 572 DLPF---------NPDLLEQRIGRLDRIGQK 593 (956)
T ss_pred cCCC---------CHHHHHHHhcccccCCCC
Confidence 9987 999999999999999987
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=6.6e-13 Score=140.21 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=80.7
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC----cc-----
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----IS----- 160 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~----i~----- 160 (414)
.+|||+ |++.++.++..|.+.|. ++.++||..+..++..+. |..+ ..+|+||||++|||+||+ |+
T Consensus 475 pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~~~rE~~ii~--~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 475 PVLVGTRSVAASERLSALLREAGL-PHQVLNAKQDAEEAAIVA--RAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCcHHHHHHHHH--HcCC--CCcEEEEccchhcccCcCCccchhhcCCC
Confidence 355555 99999999999999998 999999997655544444 4443 336999999999999986 33
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+||+++.|. +...|.||+||+||.|.. |.+.++..
T Consensus 550 hVI~~d~P~---------s~r~y~hr~GRTGRqG~~---G~s~~~is 584 (656)
T PRK12898 550 HVILTERHD---------SARIDRQLAGRCGRQGDP---GSYEAILS 584 (656)
T ss_pred EEEEcCCCC---------CHHHHHHhcccccCCCCC---eEEEEEec
Confidence 899999998 999999999999999976 77665544
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=3e-13 Score=144.35 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=76.7
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
.|+ +|||+ +...+..++..| ++.++||++++.+|..+++.|++| +.+++||+|++++.|+|+| ++.||++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L------~~~~I~G~ts~~ER~~il~~Fr~~-~~i~vLv~SkVgdeGIDlP~a~vvI~~ 567 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL------GKPFIYGPTSQQERMQILQNFQHN-PKVNTIFLSKVGDTSIDLPEANVLIQI 567 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc------CCceEECCCCHHHHHHHHHHHHhC-CCccEEEEecccccccCCCCCCEEEEe
Confidence 444 55555 677777777766 356789999999999999999875 3789999999999999997 9999988
Q ss_pred ccc-ccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 166 TMK-KFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 166 ~~~-k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+.+ . +..+|.||+||++|.+.+
T Consensus 568 s~~~g---------S~~q~iQRlGRilR~~~~ 590 (732)
T TIGR00603 568 SSHYG---------SRRQEAQRLGRILRAKKG 590 (732)
T ss_pred CCCCC---------CHHHHHHHhcccccCCCC
Confidence 765 3 899999999999999865
No 85
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.48 E-value=2.6e-13 Score=145.01 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=90.9
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 168 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~ 168 (414)
.++|++ |++.++.+++.|.+.|. .+.++||++++.+|..+++.|++| +++|||||+.+++|+|+| ++.||+++..
T Consensus 444 ~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~~~eR~~~l~~fr~G--~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 444 RVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEIDTLERVEIIRDLRLG--EFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred EEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCCHHHHHHHHHHHhcC--CceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 355555 99999999999999987 899999999999999999999998 999999999999999997 9999988743
Q ss_pred ccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
.|. .|-+..+|+||+|||||.. . |.++.+....
T Consensus 521 ifG----~p~~~~~~iqriGRagR~~-~---G~vi~~~~~~ 553 (655)
T TIGR00631 521 KEG----FLRSERSLIQTIGRAARNV-N---GKVIMYADKI 553 (655)
T ss_pred ccc----CCCCHHHHHHHhcCCCCCC-C---CEEEEEEcCC
Confidence 321 1228899999999999974 3 7777775543
No 86
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=1.6e-12 Score=129.31 Aligned_cols=265 Identities=17% Similarity=0.215 Sum_probs=152.4
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCc
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 75 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~ 75 (414)
.+++.+|+++|+||||+-. --+++|+|+- ...+.++-.+++.. ..++-...++.-.+.... ..|.+
T Consensus 154 ~p~l~~y~viiLDeahERt------lATDiLmGllk~v~~~rpdLk~vvmSatl~-a~Kfq~yf~n~Pll~vpg-~~PvE 225 (699)
T KOG0925|consen 154 DPLLGRYGVIILDEAHERT------LATDILMGLLKEVVRNRPDLKLVVMSATLD-AEKFQRYFGNAPLLAVPG-THPVE 225 (699)
T ss_pred CcccccccEEEechhhhhh------HHHHHHHHHHHHHHhhCCCceEEEeecccc-hHHHHHHhCCCCeeecCC-CCceE
Confidence 3678899999999999764 1266666652 12344433333332 344444444432222211 22222
Q ss_pred ----------ccccccccc----cccCCCCEEEEe-cHHHHHHHHHHHHH--------cCCCeEEEecCCCCHHHHHHHH
Q 015049 76 ----------PLNVPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIES--------RGKHLCSIVYGSLPPETRTRQA 132 (414)
Q Consensus 76 ----------~~~~~l~~l----~~i~~g~~Iv~f-sr~~~~~l~~~L~~--------~~~~~v~~ihg~L~~e~R~~~~ 132 (414)
+....+..+ ..-.+||++||. +..+++..++.+.. .|..+|..+| |.....++
T Consensus 226 i~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iF 301 (699)
T KOG0925|consen 226 IFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIF 301 (699)
T ss_pred EEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhcccc
Confidence 112222111 122489999998 68888887777753 3445788888 44344433
Q ss_pred HHhh---CCCCcccEEEEcCcccccccCC-ccEEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCc
Q 015049 133 TRFN---DASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPV 199 (414)
Q Consensus 133 ~~F~---~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~ 199 (414)
+--. +|.-..+|+|+|++++..+.++ |..||..+..| |+.+ ...|+|..+..||+|||||.. .
T Consensus 302 ep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~----p 377 (699)
T KOG0925|consen 302 EPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR----P 377 (699)
T ss_pred CCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC----C
Confidence 3221 1222469999999999999995 88898777654 5543 357899999999999999976 3
Q ss_pred eEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccC
Q 015049 200 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFAN 269 (414)
Q Consensus 200 G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 269 (414)
|.|+.++.++. .-+++.....+.+...++....-+|+.+. ..+...++-..|+.+.-++.++....++
T Consensus 378 GkcfrLYte~~-~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT- 455 (699)
T KOG0925|consen 378 GKCFRLYTEEA-FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT- 455 (699)
T ss_pred CceEEeecHHh-hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-
Confidence 78888876432 11222223333344444443333344322 1133456666666666666666554333
Q ss_pred HHHHHHHHHhhccCCCCHHH
Q 015049 270 CEEVLKVATVIDQLPLRLHE 289 (414)
Q Consensus 270 ~~~~~~~~~~l~~~~l~~~~ 289 (414)
++..++...+|++..
T Consensus 456 -----~lG~imSEFPLdPqL 470 (699)
T KOG0925|consen 456 -----SLGEIMSEFPLDPQL 470 (699)
T ss_pred -----hhhhhhhcCCCChHH
Confidence 345556666665543
No 87
>PRK14701 reverse gyrase; Provisional
Probab=99.47 E-value=1.8e-13 Score=157.43 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=85.5
Q ss_pred CEEE-EecHHH---HHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc----CcccccccCC--cc
Q 015049 91 DCIV-TFSRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS----DAIGMGLNLN--IS 160 (414)
Q Consensus 91 ~~Iv-~fsr~~---~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT----dal~~Glnl~--i~ 160 (414)
..|| |.|++. ++.+++.|.+.|. ++..+||+ |...+++|++| +++||||| |+++||||+| |+
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi-~a~~~h~~-----R~~~l~~F~~G--~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGF-KIELVSAK-----NKKGFDLFEEG--EIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCC-eEEEecch-----HHHHHHHHHcC--CCCEEEEecCCCCeeEecCccCCccC
Confidence 3455 447765 5899999999998 99999995 88999999999 99999999 5899999997 99
Q ss_pred EEEEccccccCCcc-------cccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCC
Q 015049 161 RIIFSTMKKFDGVE-------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 161 ~VI~~~~~k~dg~~-------~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~ 219 (414)
+|||+++|+|.-.- ...+......++.|||||.|.. ..++ .....++...+++.+..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~-~~~~-~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP-IEGV-LDVFPEDVEFLRSILKD 467 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc-chhH-HHhHHHHHHHHHHHhcc
Confidence 99999999964210 0111123455667999999964 3333 22223344555555543
No 88
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.47 E-value=3.5e-13 Score=132.15 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=93.1
Q ss_pred ccCCCCEEEEe-cHHHHHHHHHHHHHcCC--CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccE
Q 015049 86 NIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISR 161 (414)
Q Consensus 86 ~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~--~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~ 161 (414)
+..-..+|+|+ |+.+|..+-+.+.+.|. ..|.++||+..|.+|.+-++.|+.+ ++++|||||++++|+|| .+..
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~--dvkflictdvaargldi~g~p~ 579 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF--DVKFLICTDVAARGLDITGLPF 579 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc--CeEEEEEehhhhccccccCCce
Confidence 33445577755 99999999999998774 3688999999999999999999998 99999999999999999 6999
Q ss_pred EEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 162 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 162 VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+|+.++|. +...|.||+||+||...- |..+.+..
T Consensus 580 ~invtlpd---------~k~nyvhrigrvgraerm---glaislva 613 (725)
T KOG0349|consen 580 MINVTLPD---------DKTNYVHRIGRVGRAERM---GLAISLVA 613 (725)
T ss_pred EEEEecCc---------ccchhhhhhhccchhhhc---ceeEEEee
Confidence 99999997 888999999999998764 76665543
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.46 E-value=6.4e-13 Score=138.07 Aligned_cols=98 Identities=21% Similarity=0.388 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccc
Q 015049 99 HAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 176 (414)
Q Consensus 99 ~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~ 176 (414)
..+..+.+.|... +..+++.+||.|+++++.+++++|++| +++|||||.+++-|||+| ....|+.+..+|
T Consensus 492 ~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~--e~~ILVaTTVIEVGVdVPnATvMVIe~AERF------ 563 (677)
T COG1200 492 QAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG--EIDILVATTVIEVGVDVPNATVMVIENAERF------ 563 (677)
T ss_pred hhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC--CCcEEEEeeEEEecccCCCCeEEEEechhhh------
Confidence 4566777777643 334699999999999999999999998 999999999999999997 555566665544
Q ss_pred cCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 177 ~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
..+++.|.-||+||.+.. ++|+.+....
T Consensus 564 --GLaQLHQLRGRVGRG~~q---SyC~Ll~~~~ 591 (677)
T COG1200 564 --GLAQLHQLRGRVGRGDLQ---SYCVLLYKPP 591 (677)
T ss_pred --hHHHHHHhccccCCCCcc---eEEEEEeCCC
Confidence 899999999999999976 8887775543
No 90
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.45 E-value=8.2e-13 Score=141.77 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=90.2
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 168 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~ 168 (414)
.+|||+ |++.++.+++.|...|. ++.++||++++.+|..+++.|++| ++.|+|||+.+++|+|+| ++.||+++.+
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~~~~R~~~l~~f~~g--~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDIDTLERVEIIRDLRLG--EFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCCHHHHHHHHHHHHcC--CceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 355555 99999999999999988 899999999999999999999998 899999999999999996 8999998865
Q ss_pred ccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
.|.- |-+..+|+||+|||||. .. |.++.+..
T Consensus 525 ifG~----~~~~~~yiqr~GR~gR~-~~---G~~i~~~~ 555 (652)
T PRK05298 525 KEGF----LRSERSLIQTIGRAARN-VN---GKVILYAD 555 (652)
T ss_pred cccc----CCCHHHHHHHhccccCC-CC---CEEEEEec
Confidence 4311 22889999999999996 33 77776655
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.41 E-value=1.7e-12 Score=142.00 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCCC-EEE-EecHHHHHHHHHHHHHcCC--CeEEEecCCCCHHHHH----HHHHHh-hCCCC-cccEEEEcCcccccccC
Q 015049 88 QTGD-CIV-TFSRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRT----RQATRF-NDASS-EFDVLVASDAIGMGLNL 157 (414)
Q Consensus 88 ~~g~-~Iv-~fsr~~~~~l~~~L~~~~~--~~v~~ihg~L~~e~R~----~~~~~F-~~g~~-~~~VLVaTdal~~Glnl 157 (414)
..|. ++| |+|++.+.++.+.|.+.+. ..+.++||.+++.+|. ++++.| ++|.. ..+|||||+++++|||+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 3444 444 4499999999999987651 2699999999999994 456678 55511 14799999999999999
Q ss_pred CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 158 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 158 ~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+.+.+|..- . +.+.++||+||+||.+..
T Consensus 638 d~DvlItdl-a----------PidsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQL-C----------PVDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECC-C----------CHHHHHHHHhccCCCCCC
Confidence 998766532 2 568999999999999863
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.41 E-value=4.4e-12 Score=121.56 Aligned_cols=109 Identities=21% Similarity=0.378 Sum_probs=85.9
Q ss_pred CCC-EEEEe-cHHHHHHHHHHH-HHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEE
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAI-ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 164 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L-~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~ 164 (414)
.|. .++|+ +-...+++++.| .+.+...++.+|+.- +.|.+..+.|++| ++++||+|.+++||+.+| |+..|+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G--~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG--KITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC--ceEEEEEeehhhcccccccceEEEe
Confidence 344 44455 899999999999 555655677888764 4799999999999 999999999999999997 665555
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
-.-. +-.|-+.++|++||+||.-.. +.|-|..++..-
T Consensus 380 gaeh-------~vfTesaLVQIaGRvGRs~~~-PtGdv~FFH~G~ 416 (441)
T COG4098 380 GAEH-------RVFTESALVQIAGRVGRSLER-PTGDVLFFHYGK 416 (441)
T ss_pred cCCc-------ccccHHHHHHHhhhccCCCcC-CCCcEEEEeccc
Confidence 3322 244899999999999998865 789998887643
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.8e-12 Score=139.69 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=86.4
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC---C-cc-----
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL---N-IS----- 160 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl---~-i~----- 160 (414)
.+|||+ |++.++.++..|.+.|. ++.++||.+++.++..+...++.| +|+||||.+|||+|+ | |.
T Consensus 430 pvLIf~~t~~~se~l~~~L~~~gi-~~~~L~~~~~~~e~~~i~~ag~~g----~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 430 PVLIGTGSIEQSETFSKLLDEAGI-PHNLLNAKNAAKEAQIIAEAGQKG----AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCccHHHHHHHHHcCCCC----eEEEEccchhcCcCCCcccccccccCc
Confidence 355555 99999999999999998 999999999999988888888765 699999999999999 3 77
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+||+++.|. +...|.||+|||||.|.. |.+.++.
T Consensus 505 ~VI~~d~p~---------s~r~y~qr~GRtGR~G~~---G~s~~~i 538 (790)
T PRK09200 505 AVIGTERME---------SRRVDLQLRGRSGRQGDP---GSSQFFI 538 (790)
T ss_pred EEEeccCCC---------CHHHHHHhhccccCCCCC---eeEEEEE
Confidence 999999998 999999999999999976 6655443
No 94
>PRK09401 reverse gyrase; Reviewed
Probab=99.40 E-value=1.1e-12 Score=147.95 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=71.7
Q ss_pred CEEEEe-cHHH---HHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE----cCcccccccCC--cc
Q 015049 91 DCIVTF-SRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 160 (414)
Q Consensus 91 ~~Iv~f-sr~~---~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa----Tdal~~Glnl~--i~ 160 (414)
.+|||+ |++. ++.+++.|+..|. +++.+||++ ...+++|++| +++|||| ||+++||||+| |+
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi-~v~~~hg~l-----~~~l~~F~~G--~~~VLVatas~tdv~aRGIDiP~~Ir 401 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGI-NAELAISGF-----ERKFEKFEEG--EVDVLVGVASYYGVLVRGIDLPERIR 401 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCC-cEEEEeCcH-----HHHHHHHHCC--CCCEEEEecCCCCceeecCCCCccee
Confidence 455555 7666 9999999999998 999999999 2335999999 9999999 69999999997 89
Q ss_pred EEEEccccccCCcccccC-CHHHHHhhhcccC
Q 015049 161 RIIFSTMKKFDGVELRDL-TVPEVKQIAGRAG 191 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~l-s~~~~~QraGRAG 191 (414)
+|||+++|+|-= .+ ....+.||.||+-
T Consensus 402 yVI~y~vP~~~~----~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 402 YAIFYGVPKFKF----SLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEEeCCCCEEE----eccccccCHHHHHHHH
Confidence 999999998421 01 2355788888874
No 95
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.37 E-value=1.6e-11 Score=131.35 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC----------c
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----------I 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~----------i 159 (414)
.+|||+ |++.++.++..|.+.|. ++.++||.+.+.+|..+.++++.| .|+||||.+|||+|++ +
T Consensus 426 pvLIft~s~~~se~ls~~L~~~gi-~~~~L~a~~~~~E~~ii~~ag~~g----~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 426 PVLLITGSVEMSEIYSELLLREGI-PHNLLNAQNAAKEAQIIAEAGQKG----AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred CEEEEECcHHHHHHHHHHHHHCCC-CEEEecCCChHHHHHHHHHcCCCC----eEEEEccccccccCCCCCccccccCCe
Confidence 355555 99999999999999998 899999999999998888888776 6999999999999987 3
Q ss_pred cEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 160 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 160 ~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
..|+.+..|+ .. ...||+|||||.|.. |.+.++
T Consensus 501 ~vIit~~~ps---------~r-id~qr~GRtGRqG~~---G~s~~~ 533 (762)
T TIGR03714 501 AVIGTERMEN---------SR-VDLQLRGRSGRQGDP---GSSQFF 533 (762)
T ss_pred EEEEecCCCC---------cH-HHHHhhhcccCCCCc---eeEEEE
Confidence 4455555553 33 449999999999976 655544
No 96
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-12 Score=136.61 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=72.8
Q ss_pred eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccc---cCC---c---ccccCCHHHHH
Q 015049 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDG---V---ELRDLTVPEVK 184 (414)
Q Consensus 115 ~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg---~---~~~~ls~~~~~ 184 (414)
-|-.+|+=|+++.+.+++..--+| ..-++|||++++..+.|| |++||..+-.| ||. . ....+|..+.-
T Consensus 606 yvLPLYSLLs~~~Q~RVF~~~p~g--~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRVFDEVPKG--ERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EEeehhhhcCHHHhhhhccCCCCC--ceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 467789999999999999888887 677999999999999997 99999988654 663 2 34677999999
Q ss_pred hhhcccCCCCCCCCceEEEEecC
Q 015049 185 QIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 185 QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
||+|||||.|. |.|+.++.
T Consensus 684 QRAGRAGRtgp----GHcYRLYS 702 (1172)
T KOG0926|consen 684 QRAGRAGRTGP----GHCYRLYS 702 (1172)
T ss_pred hhccccCCCCC----Cceeehhh
Confidence 99999999884 67776654
No 97
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.35 E-value=5.5e-12 Score=138.18 Aligned_cols=182 Identities=21% Similarity=0.333 Sum_probs=118.4
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHH-HcCCceEE-ee-cccc---
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQ-VTGDDVKV-QS-YERL--- 71 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~-~~~~~~~v-~~-~~r~--- 71 (414)
++++++++|+||+|..- +-+|..+..++-.|. .....+++.++++.....++. ..+..+.. .. ...+
T Consensus 192 ~~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~ 270 (851)
T COG1205 192 LLRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGL 270 (851)
T ss_pred HHhcCcEEEEecceecc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCc
Confidence 35679999999999874 457777665543331 123344444444444444444 33444433 11 1111
Q ss_pred ------CCCccc-c-----cccc---cc--cccCCCC-EEEEe-cHHHHHHHH----HHHHHcC---CCeEEEecCCCCH
Q 015049 72 ------SPLVPL-N-----VPLG---SF--SNIQTGD-CIVTF-SRHAIYRLK----KAIESRG---KHLCSIVYGSLPP 125 (414)
Q Consensus 72 ------~pl~~~-~-----~~l~---~l--~~i~~g~-~Iv~f-sr~~~~~l~----~~L~~~~---~~~v~~ihg~L~~ 125 (414)
.|.... . .... .+ ..+..+. .++|+ ||+.++.+. +.+...+ ...+..++|++++
T Consensus 271 ~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~ 350 (851)
T COG1205 271 RYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHR 350 (851)
T ss_pred eEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCH
Confidence 110000 0 0000 00 0122333 46666 999999886 3333333 1268899999999
Q ss_pred HHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 126 ETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 126 e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
++|.++++.|+.| ++.++++|++++.|+|+ .++.||..+.|. -+..++.|++|||||.++.
T Consensus 351 ~er~~ie~~~~~g--~~~~~~st~AlelgidiG~ldavi~~g~P~--------~s~~~~~Q~~GRaGR~~~~ 412 (851)
T COG1205 351 EERRRIEAEFKEG--ELLGVIATNALELGIDIGSLDAVIAYGYPG--------VSVLSFRQRAGRAGRRGQE 412 (851)
T ss_pred HHHHHHHHHHhcC--CccEEecchhhhhceeehhhhhHhhcCCCC--------chHHHHHHhhhhccCCCCC
Confidence 9999999999999 99999999999999999 699999998773 2679999999999999954
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.33 E-value=1.8e-11 Score=133.91 Aligned_cols=180 Identities=19% Similarity=0.296 Sum_probs=122.9
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEE-ecCCChHHHHHHHHHcCC-ce-----------EEeeccccC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC-GDPAAVPLIQQILQVTGD-DV-----------KVQSYERLS 72 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~-g~~~~~~~i~~l~~~~~~-~~-----------~v~~~~r~~ 72 (414)
++++++||||=|..+-. -...|..+.+ ++++. =+++++|.--.+.- .|. ++ .|+.+-.+.
T Consensus 715 kdLGLlIIDEEqRFGVk-----~KEkLK~Lr~-~VDvLTLSATPIPRTL~Msm-~GiRdlSvI~TPP~~R~pV~T~V~~~ 787 (1139)
T COG1197 715 KDLGLLIIDEEQRFGVK-----HKEKLKELRA-NVDVLTLSATPIPRTLNMSL-SGIRDLSVIATPPEDRLPVKTFVSEY 787 (1139)
T ss_pred ecCCeEEEechhhcCcc-----HHHHHHHHhc-cCcEEEeeCCCCcchHHHHH-hcchhhhhccCCCCCCcceEEEEecC
Confidence 67999999999987622 2334444443 34443 33444443222221 121 12 222221111
Q ss_pred -CCcccccccccccccC-CCCEEEEe-cHHHHHHHHHHHHHcC-CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 73 -PLVPLNVPLGSFSNIQ-TGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 73 -pl~~~~~~l~~l~~i~-~g~~Iv~f-sr~~~~~l~~~L~~~~-~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
|..+... -++.+. .|++-+.. ..++++.+++.|++.- ..++++.||-|+..+-+.++..|-+| +++|||||
T Consensus 788 d~~~ireA---I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g--~~dVLv~T 862 (1139)
T COG1197 788 DDLLIREA---ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG--EYDVLVCT 862 (1139)
T ss_pred ChHHHHHH---HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC--CCCEEEEe
Confidence 1111111 123333 45554433 7889999999998754 23789999999999999999999998 99999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
.+++-|||+| ++++|+....+| ..++..|.-||+||..+. ++++.+.+.
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~f--------GLsQLyQLRGRVGRS~~~---AYAYfl~p~ 912 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKF--------GLAQLYQLRGRVGRSNKQ---AYAYFLYPP 912 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccc--------cHHHHHHhccccCCccce---EEEEEeecC
Confidence 9999999996 999998887765 899999999999999876 999988774
No 99
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.5e-11 Score=123.56 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=82.7
Q ss_pred CEEEEe--cHHHHHHHHHHHHHcCCCeEE-Ee--------cCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-
Q 015049 91 DCIVTF--SRHAIYRLKKAIESRGKHLCS-IV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 158 (414)
Q Consensus 91 ~~Iv~f--sr~~~~~l~~~L~~~~~~~v~-~i--------hg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~- 158 (414)
+-+++| .|..++.+.+.|.+.+. .+- .. -.||++.++.++.+.|+.| +++|||||++.+.|||+|
T Consensus 367 ~RvIVFT~yRdTae~i~~~L~~~~~-~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G--e~nVLVaTSVgEEGLDIp~ 443 (542)
T COG1111 367 SRVIVFTEYRDTAEEIVNFLKKIGI-KARVRFIGQASREGDKGMSQKEQKEIIDQFRKG--EYNVLVATSVGEEGLDIPE 443 (542)
T ss_pred ceEEEEehhHhHHHHHHHHHHhcCC-cceeEEeeccccccccccCHHHHHHHHHHHhcC--CceEEEEcccccccCCCCc
Confidence 445555 69999999999998886 432 22 2579999999999999999 999999999999999997
Q ss_pred ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 159 i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
++.||||.... |.=-++||-||+||... |.|+.+
T Consensus 444 vDlVifYEpvp---------SeIR~IQR~GRTGR~r~----Grv~vL 477 (542)
T COG1111 444 VDLVIFYEPVP---------SEIRSIQRKGRTGRKRK----GRVVVL 477 (542)
T ss_pred ccEEEEecCCc---------HHHHHHHhhCccccCCC----CeEEEE
Confidence 99999999765 78889999999999743 555544
No 100
>PRK13766 Hef nuclease; Provisional
Probab=99.31 E-value=1.8e-11 Score=134.62 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=84.7
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCC--------CCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 158 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~--------L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~- 158 (414)
.+.+|||+ +++.+..+.+.|...+. .+..+||. +++.+|..++++|++| ++++||||+++++|+|+|
T Consensus 365 ~~kvlIF~~~~~t~~~L~~~L~~~~~-~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g--~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 365 DSRIIVFTQYRDTAEKIVDLLEKEGI-KAVRFVGQASKDGDKGMSQKEQIEILDKFRAG--EFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHhCCC-ceEEEEccccccccCCCCHHHHHHHHHHHHcC--CCCEEEECChhhcCCCccc
Confidence 44566666 89999999999988887 77788876 9999999999999998 899999999999999996
Q ss_pred ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 159 i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
++.||+++.+. +...|+||+||+||.|.
T Consensus 442 ~~~VI~yd~~~---------s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 442 VDLVIFYEPVP---------SEIRSIQRKGRTGRQEE 469 (773)
T ss_pred CCEEEEeCCCC---------CHHHHHHHhcccCcCCC
Confidence 99999999876 99999999999999874
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.30 E-value=1.7e-11 Score=133.33 Aligned_cols=188 Identities=16% Similarity=0.241 Sum_probs=122.5
Q ss_pred cCEEEEecccccCCCCcchhHHHHHhC-C--CCCcEEEEecCCChHHHHHHHHHcCCceEEeec------------cccC
Q 015049 8 YDCAVIDEIQMLGCKTRGFSFTRALLG-I--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSY------------ERLS 72 (414)
Q Consensus 8 v~~vVIDE~h~i~d~~rG~~~~~~l~~-l--~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~------------~r~~ 72 (414)
.+++|+||+|++.+.. .+..-.++.. + .-..+.++.++-+.-..+.+....+....+... .|..
T Consensus 339 ~S~vIlDE~h~~~~~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 417 (733)
T COG1203 339 TSLVILDEVHLYADET-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE 417 (733)
T ss_pred hhchhhccHHhhcccc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc
Confidence 3679999999998764 3332222211 1 124566677766666666666655443222111 1111
Q ss_pred CCcccccc----c-ccccccCC--CCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhC--CCCccc
Q 015049 73 PLVPLNVP----L-GSFSNIQT--GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFD 143 (414)
Q Consensus 73 pl~~~~~~----l-~~l~~i~~--g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~--g~~~~~ 143 (414)
+......+ . .....++. ..+|||+|.+.|.++...|...+. ++..+||.+...+|.+.++..++ ..+...
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~ 496 (733)
T COG1203 418 RVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGF 496 (733)
T ss_pred chhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCe
Confidence 11111110 0 11122232 235668899999999999998887 89999999999999999985442 112568
Q ss_pred EEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 144 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 144 VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
|+|||.+++.|+|++.+.+|= +.. +.++++||+||.+|.|.+ ..|.++.+...+
T Consensus 497 IvVaTQVIEagvDidfd~mIT-e~a----------PidSLIQR~GRv~R~g~~-~~~~~~v~~~~~ 550 (733)
T COG1203 497 IVVATQVIEAGVDIDFDVLIT-ELA----------PIDSLIQRAGRVNRHGKK-ENGKIYVYNDEE 550 (733)
T ss_pred EEEEeeEEEEEeccccCeeee-cCC----------CHHHHHHHHHHHhhcccc-cCCceeEeeccc
Confidence 999999999999999876643 322 789999999999999965 457777765544
No 102
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.28 E-value=1.4e-10 Score=123.69 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---cc---
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---IS--- 160 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~--- 160 (414)
.|+ +||++ |...++.+++.|.+.|. ++.++||. +.+|+..+..|..+ ...|+||||.+|||+||+ |.
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi-~~~~Lna~--q~~rEa~ii~~ag~--~g~VtIATnmAgRGtDI~l~~V~~~G 478 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGI-PHNVLNAK--NHEREAEIIAQAGR--KGAVTIATNMAGRGTDIKLEEVKELG 478 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCC-CeEEeeCC--hHHHHHHHHHhcCC--CceEEEEeccccCCcCCCccchhhcC
Confidence 455 34433 99999999999999998 88999998 88999999999987 779999999999999985 34
Q ss_pred --EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 --~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||.+..|. +...+.|+.|||||.|..
T Consensus 479 Gl~VI~t~~p~---------s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 479 GLYVIGTERHE---------SRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CcEEEecCCCC---------cHHHHHHHhccccCCCCC
Confidence 899999888 999999999999999976
No 103
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=1.2e-10 Score=121.54 Aligned_cols=101 Identities=15% Similarity=0.257 Sum_probs=75.7
Q ss_pred HHHHHHHHHHc-CCCeEEEecCCCCHHHH--HHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccc------ccc
Q 015049 101 IYRLKKAIESR-GKHLCSIVYGSLPPETR--TRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM------KKF 170 (414)
Q Consensus 101 ~~~l~~~L~~~-~~~~v~~ihg~L~~e~R--~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~------~k~ 170 (414)
++++.+.|.+. ...++..+|++++...+ ..+++.|++| +++|||+|+.++.|+|+| +..|++.+. |.|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g--~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG--KADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC--CCCEEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 56777777765 22378899999987766 8999999998 999999999999999996 888865443 222
Q ss_pred CCcccccCCHHHHHhhhcccCCCCCCCCceEEE--EecCCC
Q 015049 171 DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT--CLDSED 209 (414)
Q Consensus 171 dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~--~~~~~d 209 (414)
... .-+...+.|++|||||.+.. |.|+ +..+++
T Consensus 349 ra~---E~~~~ll~q~~GRagR~~~~---g~viiqt~~p~~ 383 (505)
T TIGR00595 349 RAA---ERGFQLLTQVAGRAGRAEDP---GQVIIQTYNPNH 383 (505)
T ss_pred chH---HHHHHHHHHHHhccCCCCCC---CEEEEEeCCCCC
Confidence 211 11568899999999999876 5554 555543
No 104
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.25 E-value=2.8e-11 Score=136.74 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=65.0
Q ss_pred CEEEEe-cH---HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE----cCcccccccCC--cc
Q 015049 91 DCIVTF-SR---HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 160 (414)
Q Consensus 91 ~~Iv~f-sr---~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa----Tdal~~Glnl~--i~ 160 (414)
.+|||+ |+ +.++.++..|.+.|. +++.+||+++. ..++.|++| +++|||| ||+++||||+| |+
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~-~a~~lhg~~~~----~~l~~Fr~G--~~~vLVata~~tdv~aRGIDip~~V~ 400 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGV-KAVAYHATKPK----EDYEKFAEG--EIDVLIGVASYYGTLVRGLDLPERVR 400 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCc-eEEEEeCCCCH----HHHHHHHcC--CCCEEEEeccccCcccccCCCCcccc
Confidence 455555 87 999999999999987 99999999973 688999998 9999999 59999999997 89
Q ss_pred EEEEcccccc
Q 015049 161 RIIFSTMKKF 170 (414)
Q Consensus 161 ~VI~~~~~k~ 170 (414)
+|||++.|+|
T Consensus 401 ~vI~~~~P~~ 410 (1171)
T TIGR01054 401 YAVFLGVPKF 410 (1171)
T ss_pred EEEEECCCCE
Confidence 9999999986
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=1.2e-10 Score=125.03 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=83.2
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC----cc--
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----IS-- 160 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~----i~-- 160 (414)
.|+ +||++ |+..++.++..|.+.+. ++.++||.....++..+.+.++.| .|+||||.+|||.||+ |.
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi-~~~~Lna~~~~~Ea~ii~~ag~~g----~VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKEAEIIMNAGQRG----AVTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCC-CeeEecCCcHHHHHHHHHhcCCCc----eEEEEeccccCCCCCCCCcchhhh
Confidence 444 44544 99999999999999998 899999999988888888888887 4999999999999984 67
Q ss_pred ---EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 ---RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ---~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||.+..|. +...+.|+.|||||.|..
T Consensus 514 GGLhVI~te~pe---------s~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 514 GGLAVIGTERHE---------SRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CCcEEEeeecCC---------cHHHHHHHhhhhccCCCC
Confidence 999999887 999999999999999986
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=3.3e-10 Score=122.82 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=79.4
Q ss_pred EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC----ccEE----
Q 015049 92 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----ISRI---- 162 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~----i~~V---- 162 (414)
+||++ |+..++.+++.|.+.++ .+.++|+ .+..|+..+..|..+ ...|+||||.+|||+||+ |..|
T Consensus 601 VLIft~Sve~sE~Ls~~L~~~gI-~h~vLna--kq~~REa~Iia~AG~--~g~VtIATNMAGRGtDIkl~~~V~~vGGL~ 675 (1025)
T PRK12900 601 VLVGTASVEVSETLSRMLRAKRI-AHNVLNA--KQHDREAEIVAEAGQ--KGAVTIATNMAGRGTDIKLGEGVRELGGLF 675 (1025)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCC-CceeecC--CHHHhHHHHHHhcCC--CCeEEEeccCcCCCCCcCCccchhhhCCce
Confidence 45544 99999999999999998 8899997 688999999999998 678999999999999986 3222
Q ss_pred -EEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 163 -IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 163 -I~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
|.+..+. +...+.|+.|||||.|.. |...++
T Consensus 676 VIgterhe---------s~Rid~Ql~GRtGRqGdp---GsS~ff 707 (1025)
T PRK12900 676 ILGSERHE---------SRRIDRQLRGRAGRQGDP---GESVFY 707 (1025)
T ss_pred eeCCCCCc---------hHHHHHHHhhhhhcCCCC---cceEEE
Confidence 4444444 888899999999999976 554444
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.18 E-value=4.6e-10 Score=113.33 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=97.9
Q ss_pred CEEEE-ecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcccc
Q 015049 91 DCIVT-FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 168 (414)
Q Consensus 91 ~~Iv~-fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~ 168 (414)
.++|. .|++.++.++..|.+.|. ++..+|+++..-+|.++.+..+.| .++|||.-+.+-.|+|+| |..|.+.+..
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~gi-kv~YlHSdidTlER~eIirdLR~G--~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELGI-KVRYLHSDIDTLERVEIIRDLRLG--EFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred eEEEEeehHHHHHHHHHHHHhcCc-eEEeeeccchHHHHHHHHHHHhcC--CccEEEeehhhhccCCCcceeEEEEeecC
Confidence 35564 499999999999999999 999999999999999999999999 999999999999999998 8888887765
Q ss_pred ccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 218 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~ 218 (414)
| .|. .-|-.+++|.+|||.|-- .|.|+.+.+.--+.+++++.
T Consensus 525 K-eGF---LRse~SLIQtIGRAARN~----~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 525 K-EGF---LRSERSLIQTIGRAARNV----NGKVILYADKITDSMQKAID 566 (663)
T ss_pred c-ccc---ccccchHHHHHHHHhhcc----CCeEEEEchhhhHHHHHHHH
Confidence 5 232 117889999999999954 48898887655455555544
No 108
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.17 E-value=5.9e-10 Score=120.39 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHc--CCCeEEEecCCCC--HHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccc---
Q 015049 98 RHAIYRLKKAIESR--GKHLCSIVYGSLP--PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK--- 169 (414)
Q Consensus 98 r~~~~~l~~~L~~~--~~~~v~~ihg~L~--~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k--- 169 (414)
...++.+.+.|.+. +. ++..+||++. ++.++.+++.|++| +++|||+|+.++.|+|+| +..|++.+...
T Consensus 436 g~G~e~~~e~l~~~fp~~-~v~~~~~d~~~~~~~~~~~l~~f~~g--~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 436 GPGTERLEEELAELFPEA-RILRIDRDTTRRKGALEQLLAQFARG--EADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred eccHHHHHHHHHHhCCCC-cEEEEeccccccchhHHHHHHHHhcC--CCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 34677788888765 33 7889999987 46789999999998 999999999999999996 88887665332
Q ss_pred ---cCCcccccCCHHHHHhhhcccCCCCCCCCceEEE--EecCC
Q 015049 170 ---FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT--CLDSE 208 (414)
Q Consensus 170 ---~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~--~~~~~ 208 (414)
|...+ -..+.|.|++|||||.+.. |.|+ +..++
T Consensus 513 ~pdfra~E---r~~~~l~q~~GRagR~~~~---g~viiqT~~p~ 550 (679)
T PRK05580 513 SPDFRASE---RTFQLLTQVAGRAGRAEKP---GEVLIQTYHPE 550 (679)
T ss_pred CCccchHH---HHHHHHHHHHhhccCCCCC---CEEEEEeCCCC
Confidence 21111 1468899999999998876 6555 44443
No 109
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.15 E-value=2.3e-10 Score=117.73 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=80.8
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 168 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~ 168 (414)
.+++|. +...+..++..+...+. +..+.|..|+++|.++.+.|+.| ++++||++.++..|+|+| ++.+|+....
T Consensus 285 ~~lif~~~~~~a~~i~~~~~~~~~--~~~it~~t~~~eR~~il~~fr~g--~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 285 KTLIFASDVEHAYEIAKLFLAPGI--VEAITGETPKEEREAILERFRTG--GIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred cEEEEeccHHHHHHHHHHhcCCCc--eEEEECCCCHHHHHHHHHHHHcC--CCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 345544 89999999999987766 88999999999999999999998 699999999999999997 8988888877
Q ss_pred ccCCcccccCCHHHHHhhhcccCCC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRY 193 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~ 193 (414)
. |...|.||+||.-|.
T Consensus 361 ~---------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 361 G---------SRRLFIQRLGRGLRP 376 (442)
T ss_pred C---------cHHHHHHHhhhhccC
Confidence 7 999999999999994
No 110
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.12 E-value=4e-09 Score=118.79 Aligned_cols=94 Identities=16% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc------CC--CeEEEecCCCCHHHHHHHHHHhhCCCCcc-cEEEEcCcccccccCC
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR------GK--HLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN 158 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~------~~--~~v~~ihg~L~~e~R~~~~~~F~~g~~~~-~VLVaTdal~~Glnl~ 158 (414)
++.+|||+ |+.+++.+++.|.+. +. ..|..++|+.+ .+..+++.|+++ .. +|+|++|.+..|+|+|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcc
Confidence 35676655 999999998887653 11 14567899886 567899999987 54 7999999999999997
Q ss_pred -ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 159 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 159 -i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
|..||+...++ |...|+||+||+.|.-.
T Consensus 774 ~v~~vVf~rpvk---------S~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 774 SICNLVFLRRVR---------SRILYEQMLGRATRLCP 802 (1123)
T ss_pred cccEEEEecCCC---------CHHHHHHHHhhhccCCc
Confidence 99999999888 99999999999999743
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.09 E-value=3.2e-09 Score=115.11 Aligned_cols=182 Identities=20% Similarity=0.214 Sum_probs=117.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcC------CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-cc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRG------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~------~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~ 160 (414)
.|.++||. +-.++..+...|+.+. ..-+-.+|+.|+.+++..+++.--.| ..+|++||++++.+|.|| +-
T Consensus 413 ~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g--~RKIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 413 EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG--TRKIILATNIAETSITIDDVV 490 (924)
T ss_pred CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC--cchhhhhhhhHhhcccccCeE
Confidence 45556665 8999999999997522 11345669999999999999888887 789999999999999994 99
Q ss_pred EEEEccccc---cCCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhC-CCCcc-------
Q 015049 161 RIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL-EPSPM------- 223 (414)
Q Consensus 161 ~VI~~~~~k---~dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~-~~~~~------- 223 (414)
+||..+..| ||.. ...+++.+...||.|||||... |.|+.+..... ..+.+. ...++
T Consensus 491 yVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~~--~~~~~~~~q~PEilR~pL~ 564 (924)
T KOG0920|consen 491 YVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRSR--YEKLMLAYQLPEILRTPLE 564 (924)
T ss_pred EEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechhh--hhhcccccCChHHHhChHH
Confidence 999888655 6643 2345689999999999999763 78776654321 111111 11111
Q ss_pred -----cccCCCCCCHHHHHHHHhcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCC
Q 015049 224 -----LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 284 (414)
Q Consensus 224 -----i~~~~i~p~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (414)
++.....-..+.|....+.++...+...+..+....+++..- +...+..++..+|
T Consensus 565 ~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e------~LT~LG~~la~lP 624 (924)
T KOG0920|consen 565 ELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESE------ELTPLGLHLASLP 624 (924)
T ss_pred HhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcc------cchHHHHHHHhCC
Confidence 111111112233333334455566666677776666655432 3344455555443
No 112
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.96 E-value=2.8e-10 Score=105.27 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=45.8
Q ss_pred EEEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 145 LVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 145 LVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+||||++|+|+|+ .+..|++|+.|. +..+|+||+|||||+|.+ |..+++..
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~---------~~DtYlHrv~rAgrfGtk---glaitfvs 353 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPE---------DSDTYLHRVARAGRFGTK---GLAITFVS 353 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCC---------CchHHHHHhhhhhccccc---cceeehhc
Confidence 9999999999999 588889999998 999999999999999987 87776644
No 113
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.93 E-value=8.4e-09 Score=109.16 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=76.1
Q ss_pred EEEEe-cHHHHHHHHHHHHH---cCCCeEEEe--------cCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-
Q 015049 92 CIVTF-SRHAIYRLKKAIES---RGKHLCSIV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 158 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~---~~~~~v~~i--------hg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~- 158 (414)
+|+|. +|..|+.+...|.+ .|. +.... --+|++....+++++|++| +++|||||++++.|||++
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~~~~~i-r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G--~~NvLVATSV~EEGLDI~e 492 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQLHELGI-KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG--EINVLVATSVAEEGLDIGE 492 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhhhhccc-ccceeeeccccccccccCHHHHHHHHHHHhCC--CccEEEEecchhccCCccc
Confidence 56655 99999999999873 222 22222 2479999999999999998 999999999999999996
Q ss_pred ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 159 i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
++.||-|+... ++-..+||.|| ||...
T Consensus 493 c~lVIcYd~~s---------npIrmIQrrGR-gRa~n 519 (746)
T KOG0354|consen 493 CNLVICYDYSS---------NPIRMVQRRGR-GRARN 519 (746)
T ss_pred ccEEEEecCCc---------cHHHHHHHhcc-ccccC
Confidence 99999988776 88899999999 99875
No 114
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=4e-08 Score=106.29 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc------
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS------ 160 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~------ 160 (414)
.|. +||++ |+..++.+++.|.+.|. ++.++||. +.+|+..+..|+.+ ...|+||||.+|||+||+..
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi-~~~vLnak--q~eREa~Iia~Ag~--~g~VtIATNmAGRGtDI~LgGn~~~~ 503 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAK--NHEREAEIIAQAGR--PGAVTIATNMAGRGTDIKLGGNPEML 503 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC-ceEeccCc--hHHHHHHHHHhcCC--CceEEEecccccCCcCccCCCchhhh
Confidence 444 45544 99999999999999998 89999995 78999999999998 77999999999999998764
Q ss_pred ---------------------------------EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 ---------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ---------------------------------~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||....+. |..-=.|-.|||||.|..
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe---------srRid~QlrGRagRQGdp 563 (830)
T PRK12904 504 AAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE---------SRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc---------hHHHHHHhhcccccCCCC
Confidence 344433333 667778999999999976
No 115
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=3.5e-08 Score=107.04 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCCCE-EEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCc
Q 015049 88 QTGDC-IVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 159 (414)
Q Consensus 88 ~~g~~-Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i 159 (414)
..|.. ||+. |...++.+++.|.+.|+ ++.++||.+...+|..+++.|+.| .|+||||.+|||+||..
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi-~h~vLnak~~q~Ea~iia~Ag~~G----~VtIATNmAGRGtDI~L 510 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENI-KHQVLNAKFHEKEAQIIAEAGRPG----AVTIATNMAGRGTDIVL 510 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCC-CeEeecCCCChHHHHHHHhCCCCC----cEEEeccCccCCcceec
Confidence 35554 4433 99999999999999998 899999999999999999999998 49999999999999754
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=6.2e-08 Score=104.95 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=78.6
Q ss_pred CCCCEEEEe--cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc-----
Q 015049 88 QTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS----- 160 (414)
Q Consensus 88 ~~g~~Iv~f--sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~----- 160 (414)
..|..+++| |...++.++..|.+.+. .+.++||..+..+|..+++.|+.| . |+||||.+|||.||...
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi-~~~vLnak~~~~Ea~ii~~Ag~~G--~--VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKI-PHEVLNAKFHEREAEIVAQAGRTG--A--VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCC-CeEeccCcccHHHHHHHHhCCCCC--c--EEEecCCcCCCcceecCCchHH
Confidence 356644433 89999999999999998 899999999999999999999998 4 99999999999997543
Q ss_pred ---------------------------------EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEE
Q 015049 161 ---------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202 (414)
Q Consensus 161 ---------------------------------~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v 202 (414)
+||-...+. |..-=.|-.|||||.|.. |....
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe---------SrRID~QLrGRaGRQGDP-Gss~f 586 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHE---------SRRIDNQLRGRAGRQGDA-GSSRF 586 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCc---------hHHHHhhhhcccccCCCC-CceeE
Confidence 333333222 555567999999999976 44333
No 117
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.65 E-value=1.8e-07 Score=104.07 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCCEEEEe--cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCC-cccEEEEcCcccccccC-CccEEEE
Q 015049 89 TGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 89 ~g~~Iv~f--sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~-~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
.|+-|++| .......+...|...+. .+..++|+++.++|..+++.|+++++ ..-+|++|.+.|.|||+ .+++||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~-~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGY-QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCC-cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 34445555 35666677778887887 88899999999999999999987533 34679999999999999 5999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
++.+- ++....|+.||+-|.|+. ..-.|+.+
T Consensus 565 yD~dW---------NP~~d~QAidRaHRIGQk-k~V~VyRL 595 (1033)
T PLN03142 565 YDSDW---------NPQVDLQAQDRAHRIGQK-KEVQVFRF 595 (1033)
T ss_pred eCCCC---------ChHHHHHHHHHhhhcCCC-ceEEEEEE
Confidence 99775 999999999999999987 33444443
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.60 E-value=9.5e-08 Score=97.19 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=84.3
Q ss_pred CEEEEe-cHHHHHHHHHHHHH----cCC---CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccE
Q 015049 91 DCIVTF-SRHAIYRLKKAIES----RGK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISR 161 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~----~~~---~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~ 161 (414)
.||-|+ +|+-|+-+-...++ .+. ..+.-+.||.+.++|+.+++.+=.| ++.-+|||+|++.|||+ ..+.
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--~L~giIaTNALELGIDIG~LDA 604 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--KLCGIIATNALELGIDIGHLDA 604 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC--eeeEEEecchhhhcccccccee
Confidence 366554 99999866544332 221 1244568999999999999988887 89999999999999999 6999
Q ss_pred EEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceE-EEEecCCCHHHH
Q 015049 162 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-VTCLDSEDLPLL 213 (414)
Q Consensus 162 VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~-v~~~~~~d~~~l 213 (414)
|++.+.|- |.+.+.|.+|||||..+. +-.. |....+-|..++
T Consensus 605 Vl~~GFP~---------S~aNl~QQ~GRAGRRNk~-SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 605 VLHLGFPG---------SIANLWQQAGRAGRRNKP-SLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred EEEccCch---------hHHHHHHHhccccccCCC-ceEEEEEeccchhhHhh
Confidence 99999886 999999999999999976 3333 333444454433
No 119
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.56 E-value=2.4e-07 Score=101.51 Aligned_cols=216 Identities=16% Similarity=0.206 Sum_probs=150.5
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCC------CCcEEEEecCCChHHHHHHHHHcC-CceEEeeccccCCCccc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTG-DDVKVQSYERLSPLVPL 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------a~~i~l~g~~~~~~~i~~l~~~~~-~~~~v~~~~r~~pl~~~ 77 (414)
.+++++.|.||.||++ ...|..++.+.. +. .+.+++.+.++...++++++.... ..+++....|++|++..
T Consensus 1251 iQ~v~l~i~d~lh~ig-g~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~ 1328 (1674)
T KOG0951|consen 1251 IQQVDLFIVDELHLIG-GVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDLIGASSSGVFNFSPSVRPVPLEIH 1328 (1674)
T ss_pred hhhcceEeeehhhhhc-ccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhhccccccceeecCcccCCCceeEE
Confidence 4789999999999999 566766554432 21 256788888887777787754332 23677788899998843
Q ss_pred ccccc-----------------cccc--cCCCCEEEEe-cHHHHHHHHHHHHH---------------------cCCCeE
Q 015049 78 NVPLG-----------------SFSN--IQTGDCIVTF-SRHAIYRLKKAIES---------------------RGKHLC 116 (414)
Q Consensus 78 ~~~l~-----------------~l~~--i~~g~~Iv~f-sr~~~~~l~~~L~~---------------------~~~~~v 116 (414)
...+. .+.+ ..+..++||. +|+.|..++-.+-. ....++
T Consensus 1329 i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~ 1408 (1674)
T KOG0951|consen 1329 IQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKH 1408 (1674)
T ss_pred EEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccc
Confidence 32211 1111 1234466666 99988876654321 001123
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCccc--ccCCHHHHHhhhcccCCCC
Q 015049 117 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL--RDLTVPEVKQIAGRAGRYG 194 (414)
Q Consensus 117 ~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~--~~ls~~~~~QraGRAGR~g 194 (414)
++=|-+|++....-+-..|..| .++|+|.+.- .+|+-.....||.++..-|||... .+.+.++..|+.|+|.|.|
T Consensus 1409 gvg~e~~s~~d~~iv~~l~e~g--~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~ 1485 (1674)
T KOG0951|consen 1409 GVGHEGLSSNDQEIVQQLFEAG--AIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAG 1485 (1674)
T ss_pred cccccccCcchHHHHHHHHhcC--cEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCCc
Confidence 3339999999999999999998 9999999988 999999999999999999999864 5679999999999998844
Q ss_pred CCCCceEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHH
Q 015049 195 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 239 (414)
Q Consensus 195 ~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~ 239 (414)
-+|+.....+..++++.+..+ .|...++..+
T Consensus 1486 -----k~vi~~~~~~k~yykkfl~e~---------lPves~lq~~ 1516 (1674)
T KOG0951|consen 1486 -----KCVIMCHTPKKEYYKKFLYEP---------LPVESHLQHC 1516 (1674)
T ss_pred -----cEEEEecCchHHHHHHhccCc---------CchHHHHHHH
Confidence 234444444556777776644 4455555544
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.23 E-value=1.2e-05 Score=87.00 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCEEE-EecHHHHHHHHHHHHHcCC----CeEEEecCCCCHH---------------------HHHHHHHHhhCCCCccc
Q 015049 90 GDCIV-TFSRHAIYRLKKAIESRGK----HLCSIVYGSLPPE---------------------TRTRQATRFNDASSEFD 143 (414)
Q Consensus 90 g~~Iv-~fsr~~~~~l~~~L~~~~~----~~v~~ihg~L~~e---------------------~R~~~~~~F~~g~~~~~ 143 (414)
+.++| |.||..|..+++.|.+... ..+.+++|+-+.+ ......++|+++ +.++
T Consensus 515 ~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~ 593 (667)
T TIGR00348 515 FKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK 593 (667)
T ss_pred CceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce
Confidence 55655 5699999999988866421 1344555543332 124678899874 4899
Q ss_pred EEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCC-CCCCCCceEEEEecCCCHHHHHHhhC
Q 015049 144 VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR-YGSKFPVGEVTCLDSEDLPLLHKSLL 218 (414)
Q Consensus 144 VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR-~g~~~~~G~v~~~~~~d~~~l~~~l~ 218 (414)
+||++|.+..|+|.| +..+++.... .-..++|.+||+-| ...+...|.|+.+.. ..+.+.+++.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKpl----------k~h~LlQai~R~nR~~~~~K~~g~IvDy~g-~~~~l~~Al~ 659 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPL----------KYHGLLQAIARTNRIDGKDKTFGLIVDYRG-LEKSLIDALS 659 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccc----------cccHHHHHHHHhccccCCCCCCEEEEECcC-hHHHHHHHHH
Confidence 999999999999998 5555554433 33458999999999 444335688887754 3455555543
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.02 E-value=0.00011 Score=79.60 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=67.3
Q ss_pred CCCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc-----
Q 015049 88 QTGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS----- 160 (414)
Q Consensus 88 ~~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~----- 160 (414)
..|.. +| +-|....+.+++.|.+.|+ ...++++.--..+-..+.+.=+. -.|.|||+.+|||-||...
T Consensus 424 ~~gqPVLVgT~SIe~SE~ls~~L~~~gi-~h~vLNAk~~e~EA~IIa~AG~~----GaVTIATNMAGRGTDI~Lg~~V~~ 498 (925)
T PRK12903 424 KKGQPILIGTAQVEDSETLHELLLEANI-PHTVLNAKQNAREAEIIAKAGQK----GAITIATNMAGRGTDIKLSKEVLE 498 (925)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCC-CceeecccchhhHHHHHHhCCCC----CeEEEecccccCCcCccCchhHHH
Confidence 35554 44 4499999999999999988 77788775332222222222222 3699999999999998644
Q ss_pred ----EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 ----RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ----~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||....+. |..-=.|..|||||.|..
T Consensus 499 ~GGLhVIgTerhe---------SrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 499 LGGLYVLGTDKAE---------SRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred cCCcEEEecccCc---------hHHHHHHHhcccccCCCC
Confidence 677666554 555556999999999976
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.00 E-value=0.00016 Score=77.98 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=66.4
Q ss_pred eEEEecCCCCHHH--HHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCc---ccccCCHHHHHhhhc
Q 015049 115 LCSIVYGSLPPET--RTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGV---ELRDLTVPEVKQIAG 188 (414)
Q Consensus 115 ~v~~ihg~L~~e~--R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~---~~~~ls~~~~~QraG 188 (414)
++..+-++..... -+..+..|.+| +.+|||.|..++-|.|+| +..|.+.+....-+. +-..-+...+.|-+|
T Consensus 508 rv~r~d~Dtt~~k~~~~~~l~~~~~g--e~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaG 585 (730)
T COG1198 508 RIIRIDSDTTRRKGALEDLLDQFANG--EADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred cEEEEccccccchhhHHHHHHHHhCC--CCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHh
Confidence 4555555544322 35678899998 999999999999999996 887765543221110 001116788999999
Q ss_pred ccCCCCCCCCceEEEEecCCCHHHHHHhhCC
Q 015049 189 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 219 (414)
Q Consensus 189 RAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~ 219 (414)
||||.+.. +..++-++++ |.+.++..+..
T Consensus 586 RAgR~~~~-G~VvIQT~~P-~hp~i~~~~~~ 614 (730)
T COG1198 586 RAGRAGKP-GEVVIQTYNP-DHPAIQALKRG 614 (730)
T ss_pred hhccCCCC-CeEEEEeCCC-CcHHHHHHHhc
Confidence 99999876 4455556666 44555544443
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.00 E-value=6.5e-05 Score=80.43 Aligned_cols=95 Identities=17% Similarity=0.285 Sum_probs=71.6
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEE
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 163 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI 163 (414)
+..|||. +..+++.+...+.+.- ..-|..+.|+-... ...+..|...+.--+|.|+.|.+..|+|+| |..+|
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 3455544 9999999999987632 22567777775544 344556655433578999999999999996 99999
Q ss_pred EccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 164 ~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
|....+ |...|+||+||+=|.-.
T Consensus 505 F~r~Vr---------SktkF~QMvGRGTRl~~ 527 (875)
T COG4096 505 FDRKVR---------SKTKFKQMVGRGTRLCP 527 (875)
T ss_pred ehhhhh---------hHHHHHHHhcCccccCc
Confidence 988776 99999999999988643
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=0.00033 Score=75.00 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=69.4
Q ss_pred CCCCEEE--EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc-----
Q 015049 88 QTGDCIV--TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS----- 160 (414)
Q Consensus 88 ~~g~~Iv--~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~----- 160 (414)
..|..|+ +-|....+.++..|.+.|+ +..++++.-...+-..+.+.=+.| .|-|||+.+|||-||...
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~gI-~h~vLNAk~~~~EA~IIa~AG~~g----aVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAGV-PAVVLNAKNDAEEARIIAEAGKYG----AVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCCC-cceeeccCchHhHHHHHHhcCCCC----cEEEEecCCCCccCeecCCCccc
Confidence 4566544 3389999999999999998 888888764433333333433443 699999999999997543
Q ss_pred -----------EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 -----------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 -----------~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||-...+. |..-=.|..|||||.|..
T Consensus 500 ~~~~V~~~GGLhVIgTerhe---------SrRID~QLrGRaGRQGDp 537 (764)
T PRK12326 500 DRDRVAELGGLHVIGTGRHR---------SERLDNQLRGRAGRQGDP 537 (764)
T ss_pred chHHHHHcCCcEEEeccCCc---------hHHHHHHHhcccccCCCC
Confidence 455554444 777788999999999976
No 125
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.97 E-value=4.1e-05 Score=83.29 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=67.6
Q ss_pred ccccccCCCCEEEEec---HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC----ccccc
Q 015049 82 GSFSNIQTGDCIVTFS---RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD----AIGMG 154 (414)
Q Consensus 82 ~~l~~i~~g~~Iv~fs---r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd----al~~G 154 (414)
..++++..|..|++.. +..++++++.|+..|. ++..+|+. ...-++.|..| ++++||... ++-+|
T Consensus 329 elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-~a~~~~a~-----~~~~le~F~~G--eidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 329 ELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGI-NAELIHAE-----KEEALEDFEEG--EVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred HHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCc-eEEEeecc-----chhhhhhhccC--ceeEEEEecccccceeec
Confidence 3445666676666655 8999999999999998 88888873 37889999999 999999865 68999
Q ss_pred ccCC--ccEEEEcccccc
Q 015049 155 LNLN--ISRIIFSTMKKF 170 (414)
Q Consensus 155 lnl~--i~~VI~~~~~k~ 170 (414)
||+| |+++||++.|||
T Consensus 401 lDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 401 LDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred CCchhheeEEEEecCCce
Confidence 9998 999999999974
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.00067 Score=74.48 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=68.5
Q ss_pred CCC-EEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc------
Q 015049 89 TGD-CIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS------ 160 (414)
Q Consensus 89 ~g~-~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~------ 160 (414)
.|. ++| +-|....+.++..|.+.|+ ...++++.-...+-..+.+.=+.| .|.|||+.+|||-||...
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi-~h~vLNak~~~~Ea~iia~AG~~g----~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRI-EHTVLNAKNHAQEAEIIAGAGKLG----AVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC-cceecccchhhhHHHHHHhcCCCC----cEEEeeccccCCcccccCchHHhc
Confidence 555 444 5589999999999999988 777777763333333334333333 699999999999998432
Q ss_pred ---EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 ---RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ---~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||....+. |..--.|..|||||.|..
T Consensus 642 GGLhVIgTer~e---------s~Rid~Ql~GRagRQGdp 671 (970)
T PRK12899 642 GGLYVIGTSRHQ---------SRRIDRQLRGRCARLGDP 671 (970)
T ss_pred CCcEEEeeccCc---------hHHHHHHHhcccccCCCC
Confidence 455555444 888889999999999976
No 127
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.76 E-value=0.00018 Score=72.94 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=89.4
Q ss_pred EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccE-EEEcCcccccccC-CccEEEEcccc
Q 015049 92 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV-LVASDAIGMGLNL-NISRIIFSTMK 168 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~V-LVaTdal~~Glnl-~i~~VI~~~~~ 168 (414)
.+||. -..-.+.+...+++++. +..-+-|+.|+..|....+.|...+ +++| +++-.|.|+|+++ ..+.|||..++
T Consensus 495 flVFaHH~~vLd~Iq~~~~~r~v-g~IRIDGst~s~~R~ll~qsFQ~se-ev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 495 FLVFAHHQIVLDTIQVEVNKRKV-GSIRIDGSTPSHRRTLLCQSFQTSE-EVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred EEEEehhHHHHHHHHHHHHHcCC-CeEEecCCCCchhHHHHHHHhcccc-ceEEEEEEEeecccceeeeccceEEEEEec
Confidence 44444 45566678888888887 6666799999999999999998763 4444 4566789999999 58899999998
Q ss_pred ccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHH-HHHHhhCCCCcccccCCC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEPSPMLESAGL 229 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~-~l~~~l~~~~~~i~~~~i 229 (414)
. ++.-++|---||-|.|+..+.++.+........ ++...+++....+.+.++
T Consensus 573 w---------nPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000|consen 573 W---------NPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred C---------CCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhccc
Confidence 7 777788888899999987555666666554432 333333333333333333
No 128
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.68 E-value=0.0002 Score=79.20 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=68.2
Q ss_pred EecHHHHHHHHHHHHHcC-----CCeEEEecCCCCHHHHHHHHHHh----------------------hCC--CCcccEE
Q 015049 95 TFSRHAIYRLKKAIESRG-----KHLCSIVYGSLPPETRTRQATRF----------------------NDA--SSEFDVL 145 (414)
Q Consensus 95 ~fsr~~~~~l~~~L~~~~-----~~~v~~ihg~L~~e~R~~~~~~F----------------------~~g--~~~~~VL 145 (414)
+.+.+.+-.+++.|-... ...++++|+..+...|..+++.. +++ .+...|+
T Consensus 763 ~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 842 (1110)
T TIGR02562 763 VANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIV 842 (1110)
T ss_pred EcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEE
Confidence 336777777777776432 12478899999999999888663 110 1256899
Q ss_pred EEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 146 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 146 VaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
|||.+++.|+|++.+.+|- . +. +..+++|++||.-|.|..
T Consensus 843 v~Tqv~E~g~D~dfd~~~~-~-~~---------~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 843 LATPVEEVGRDHDYDWAIA-D-PS---------SMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEeeeEEEEecccCCeeee-c-cC---------cHHHHHHHhhcccccccC
Confidence 9999999999998876653 2 22 788999999999999875
No 129
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.63 E-value=0.00095 Score=73.71 Aligned_cols=95 Identities=23% Similarity=0.277 Sum_probs=70.1
Q ss_pred CCCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc-----
Q 015049 88 QTGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS----- 160 (414)
Q Consensus 88 ~~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~----- 160 (414)
..|.. +| +-|....+.+++.|...|+ +..++++..-..+-.-+++.=+.| .|-|||+.+|||-||...
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI-~H~VLNAK~h~~EAeIVA~AG~~G----aVTIATNMAGRGTDIkLg~~V~e 700 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKI-PHNVLNAKLHQKEAEIVAEAGQPG----TVTIATNMAGRGTDIKLSPEVKA 700 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCC-cHHHhhccchhhHHHHHHhcCCCC----cEEEeccCcCCCcCcccchhhHH
Confidence 35554 34 5589999999999999887 667777765555555555554554 699999999999997522
Q ss_pred ----EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 ----RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ----~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+||-...+. |..-=.|..|||||.|..
T Consensus 701 ~GGL~VIgTerhe---------SrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 701 AGGLAIIGTERHE---------SRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred cCCCEEEEccCCC---------cHHHHHHHhcccccCCCC
Confidence 445444443 788889999999999976
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.59 E-value=0.0011 Score=72.80 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc------
Q 015049 89 TGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS------ 160 (414)
Q Consensus 89 ~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~------ 160 (414)
.|.. +| +-|....+.+++.|.+.++ +..++++.-...+-.-+++.=+.| .|-|||+.+|||-||...
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi-~h~VLNAk~~~~EA~IIa~AG~~G----aVTIATNMAGRGTDIkLg~n~~~~ 522 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGI-EHKVLNAKYHEKEAEIIAQAGRPG----ALTIATNMAGRGTDILLGGNWEVE 522 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC-cHHHhccccchhHHHHHHcCCCCC----cEEEeccCCCCCCCEecCCchHHH
Confidence 5554 44 4499999999999999987 666666654433333444333333 699999999999997432
Q ss_pred --------------------------------EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEE
Q 015049 161 --------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202 (414)
Q Consensus 161 --------------------------------~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v 202 (414)
+||-...+. |..-=.|-.|||||-|.. |....
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerhe---------SrRID~QLrGRaGRQGDP-GsS~f 586 (913)
T PRK13103 523 VAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHE---------SRRIDNQLRGRAGRQGDP-GSSRF 586 (913)
T ss_pred HHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCc---------hHHHHHHhccccccCCCC-CceEE
Confidence 333333332 666668999999999976 44333
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.56 E-value=0.00038 Score=70.70 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=76.2
Q ss_pred CCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 88 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 88 ~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
+.||-|++||- .++.+++.--+.++ -++||..|+.+|.++++.|+-+ ..++-+.-+-+....+|+| ...+|..+
T Consensus 541 ~RgDKiIVFsD-nvfALk~YAikl~K---pfIYG~Tsq~ERm~ILqnFq~n-~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 541 RRGDKIIVFSD-NVFALKEYAIKLGK---PFIYGPTSQNERMKILQNFQTN-PKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred hcCCeEEEEec-cHHHHHHHHHHcCC---ceEECCCchhHHHHHHHhcccC-CccceEEEeeccCccccCCcccEEEEEc
Confidence 37888888863 46777776666665 2689999999999999999886 4789999999999999999 44455544
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCce
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 200 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G 200 (414)
.. -| |..+=.||.||.-|+.+....+
T Consensus 616 SH--~G------SRRQEAQRLGRILRAKk~~de~ 641 (776)
T KOG1123|consen 616 SH--GG------SRRQEAQRLGRILRAKKRNDEE 641 (776)
T ss_pred cc--cc------chHHHHHHHHHHHHHhhcCccc
Confidence 32 12 6778899999999987653333
No 132
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.53 E-value=0.00042 Score=77.34 Aligned_cols=116 Identities=15% Similarity=0.265 Sum_probs=83.0
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---ccEE
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 162 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~~V 162 (414)
.+|.++|+| |.+..+.++..|..... .+..++..+.. ..|..+.+.|+++ +-.||++|+.+.+|||+| ...|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~--~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG--EKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC--CCeEEEEcceeecccccCCCceEEE
Confidence 467788877 89999999998875211 12233333333 5788999999987 668999999999999996 6678
Q ss_pred EEccccccCC----------------cc-cc----cCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 163 IFSTMKKFDG----------------VE-LR----DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 163 I~~~~~k~dg----------------~~-~~----~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
|+.++|.... +. .. |-....++|-+||.=|...+ .|.|+.++..
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D--~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREND--RGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCc--eEEEEEEccc
Confidence 8888774211 10 01 11346789999999999865 6888888653
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.40 E-value=0.0012 Score=71.31 Aligned_cols=99 Identities=25% Similarity=0.170 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCccc-EEEEcCcccccccC-CccEEEEccccccCCcc
Q 015049 97 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNL-NISRIIFSTMKKFDGVE 174 (414)
Q Consensus 97 sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~-VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~ 174 (414)
.-+.+.++.+.+.+..+..+..++|.++..+|..+++.||++.+... +|.+|-|-|.|||+ ...|||+++..-
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW----- 677 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW----- 677 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC-----
Confidence 34455555555544334489999999999999999999999866634 45666799999997 899999998664
Q ss_pred cccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 175 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 175 ~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+|+.=.|-++||=|.|++ -.-+|+.+
T Consensus 678 ----NPa~d~QAmaR~~RdGQK-k~v~iYrL 703 (776)
T KOG0390|consen 678 ----NPAVDQQAMARAWRDGQK-KPVYIYRL 703 (776)
T ss_pred ----CchhHHHHHHHhccCCCc-ceEEEEEe
Confidence 899999999999999997 33444444
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.14 E-value=0.0031 Score=67.17 Aligned_cols=108 Identities=27% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCCEEEEecHH--HHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCC-cccEEEEcCcccccccC-CccEEEE
Q 015049 89 TGDCIVTFSRH--AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 89 ~g~~Iv~fsr~--~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~-~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
.|.-|..||.- ...-+-....-++. ..+=+-|+.+.++|..+++.|+..++ ..=+|++|-|.|.|||+ ..+.||+
T Consensus 486 ~GhRVLIFSQmt~mLDILeDyc~~R~y-~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRMLDILEDYCMLRGY-EYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHHhcCc-eeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 56666667532 12222222233455 67778999999999999999998753 46689999999999999 6999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
++..- +|..=+|-.-||-|-|+. ..-.|+.+..
T Consensus 565 yDSDW---------NPQ~DLQAmDRaHRIGQ~-K~V~V~RLit 597 (971)
T KOG0385|consen 565 YDSDW---------NPQVDLQAMDRAHRIGQK-KPVVVYRLIT 597 (971)
T ss_pred ecCCC---------CchhhhHHHHHHHhhCCc-CceEEEEEec
Confidence 98653 666777888888888876 3445555433
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.06 E-value=0.0033 Score=67.17 Aligned_cols=99 Identities=29% Similarity=0.438 Sum_probs=79.6
Q ss_pred CCCCEEEEe--cHHHHHHHHHHHHH-cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEE
Q 015049 88 QTGDCIVTF--SRHAIYRLKKAIES-RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRII 163 (414)
Q Consensus 88 ~~g~~Iv~f--sr~~~~~l~~~L~~-~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI 163 (414)
+.|+-++.| ||....-+-..|.. .+. .+.-+-|..|-..|...+++|+++.+..=+|++|-+-|.|+|+ ..++||
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~y-sylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI 622 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGY-SYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI 622 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCc-eEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE
Confidence 356666656 67777777777773 555 7888899999999999999999886666678999999999999 799999
Q ss_pred EccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 164 ~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+++.. | +|+.=.|-.-||=|.|++
T Consensus 623 IfDPd-W--------NPStD~QAreRawRiGQk 646 (923)
T KOG0387|consen 623 IFDPD-W--------NPSTDNQARERAWRIGQK 646 (923)
T ss_pred EECCC-C--------CCccchHHHHHHHhhcCc
Confidence 98844 3 666667778888888886
No 136
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.05 E-value=0.0036 Score=69.66 Aligned_cols=107 Identities=27% Similarity=0.316 Sum_probs=85.5
Q ss_pred CCCEEEEec--HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCC-cccEEEEcCcccccccC-CccEEEE
Q 015049 89 TGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 89 ~g~~Iv~fs--r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~-~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
.|.-|..|| .+...-|+.+|..++. ..-=+-|+.+-+.|.+.+..|+.+++ .+=+|.||-|-|.|||+ -.++||+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~y-pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGY-PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCC-cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 445666775 4566678889988887 77778999999999999999998755 37789999999999999 6999998
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.+..- +|..=+|---||-|-|+. ..-.|+.+.
T Consensus 777 FDSDW---------NPQNDLQAqARaHRIGQk-k~VnVYRLV 808 (1373)
T KOG0384|consen 777 FDSDW---------NPQNDLQAQARAHRIGQK-KHVNVYRLV 808 (1373)
T ss_pred eCCCC---------CcchHHHHHHHHHhhccc-ceEEEEEEe
Confidence 87543 777788888999999987 444455443
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.97 E-value=0.004 Score=69.26 Aligned_cols=95 Identities=25% Similarity=0.374 Sum_probs=74.2
Q ss_pred EEEEe-cHHHHHHHHHHHHHcCCCeEE--EecCCCCHHHHHHHHHHhhCCCCcccEEE-EcCcccccccC-CccEEEEcc
Q 015049 92 CIVTF-SRHAIYRLKKAIESRGKHLCS--IVYGSLPPETRTRQATRFNDASSEFDVLV-ASDAIGMGLNL-NISRIIFST 166 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~~~~v~--~ihg~L~~e~R~~~~~~F~~g~~~~~VLV-aTdal~~Glnl-~i~~VI~~~ 166 (414)
++||+ -+....-+-+.|-+.....|. .+-|+.||..|.++.++||++. -++||+ +|-+-|.|+|+ ..++|||+.
T Consensus 1343 iLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp-tIDvLlLTThVGGLGLNLTGADTVVFvE 1421 (1549)
T KOG0392|consen 1343 ILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP-TIDVLLLTTHVGGLGLNLTGADTVVFVE 1421 (1549)
T ss_pred eEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC-ceeEEEEeeeccccccccCCCceEEEEe
Confidence 56666 566666666666655544666 5689999999999999999974 477776 55589999999 799999987
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
-.- ++..=+|-.-||-|-|++
T Consensus 1422 HDW---------NPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1422 HDW---------NPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred cCC---------CchhhHHHHHHHHhhcCc
Confidence 442 566668999999999987
No 138
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.92 E-value=0.0016 Score=58.23 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=73.2
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC--cccccccCC---cc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN---IS 160 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd--al~~Glnl~---i~ 160 (414)
.+|.++|+| |.+..+.+...+..... ....++.- ....+....+.|+++ +--||+|+. .+..|+|+| ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~--~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG--EGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS--SSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc--cCeEEEEEecccEEEeecCCCchhh
Confidence 457777777 99999988888865431 01122222 245678889999997 556999998 999999997 88
Q ss_pred EEEEccccccCCcc---------------------cccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 161 RIIFSTMKKFDGVE---------------------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 161 ~VI~~~~~k~dg~~---------------------~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
.||+.++|...... ..+-....+.|-+||+=|...+ .|.++.++.
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~llD~ 149 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD--YGVIILLDS 149 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEESG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC--cEEEEEEcC
Confidence 99999988522110 0112356788999999998865 688888865
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.80 E-value=0.071 Score=58.64 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=47.1
Q ss_pred CCCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCCC-C-HHHHHHHHHHhhCCCCcccEEEEcCcccccccCC
Q 015049 88 QTGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGSL-P-PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 158 (414)
Q Consensus 88 ~~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L-~-~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~ 158 (414)
..|.. +| +-|....+.+++.|.+.|. +..++++.- . ..+-..+++.=+.| .|-|||+.+|||-||.
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~gi-~h~vLNAk~~~~~~EA~IIA~AG~~G----~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEYRL-PHQLLNAKPENVRRESEIVAQAGRKG----SITIATNMAGRGTDII 491 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHcCC-ccceeeCCCccchhHHHHHHhcCCCC----cEEEeccccCCCcCee
Confidence 35554 33 5599999999999999998 778888752 2 33333444433333 6999999999999973
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.74 E-value=0.0066 Score=68.43 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---ccEE
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 162 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~~V 162 (414)
.+|.++|+| |.+..+.++..|..... .+..++--++....|....+.|+++ +-.||++|+.+..|||+| ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~--~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF--DKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc--CCeEEEecCcccCccccCCCceEEE
Confidence 356788877 89999989888875432 1122232233334578899999987 446999999999999997 6889
Q ss_pred EEccccccC----------------Ccc-cc----cCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 163 IFSTMKKFD----------------GVE-LR----DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 163 I~~~~~k~d----------------g~~-~~----~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
|+..+|--. |+. .. |-..-.++|-+||.=|...+ .|.|+.++..
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D--~G~v~ilD~R 893 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETD--RGTVFVLDRR 893 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCc--eEEEEEecCc
Confidence 998877421 111 11 11356679999999999865 6888888764
No 141
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.54 E-value=0.014 Score=64.92 Aligned_cols=103 Identities=25% Similarity=0.231 Sum_probs=79.8
Q ss_pred EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccccc
Q 015049 92 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKK 169 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k 169 (414)
+++|. -.....-+...+...+. ....++|+++.+.|...++.|+++.+..-++++|.+.|.|+|+ ..++||+++...
T Consensus 714 vlifsq~t~~l~il~~~l~~~~~-~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 714 VLIFSQFTPVLDLLEDYLKALGI-KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCC-cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 44454 35555567777777774 7888999999999999999999964345567777799999998 689999988655
Q ss_pred cCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 170 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 170 ~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
++....|...||-|.|+. ..-.|+.+
T Consensus 793 ---------np~~~~Qa~dRa~RigQ~-~~v~v~r~ 818 (866)
T COG0553 793 ---------NPAVELQAIDRAHRIGQK-RPVKVYRL 818 (866)
T ss_pred ---------ChHHHHHHHHHHHHhcCc-ceeEEEEe
Confidence 889999999999999886 33334433
No 142
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.54 E-value=0.031 Score=60.81 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=63.2
Q ss_pred ccCCCCEEEEe--cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---cc
Q 015049 86 NIQTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---IS 160 (414)
Q Consensus 86 ~i~~g~~Iv~f--sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~ 160 (414)
++..|..|.+| |...++.+++.....+. ++.++.|.-+.+ .+ +.+. +++|++=|.++.-|+++. .+
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~---dv-~~W~----~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLE---DV-ESWK----KYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCcc---cc-cccc----ceeEEEEeceEEEEeccchhhce
Confidence 34456655544 67777777777776765 888887766655 22 2333 789999999999999984 33
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
.|..+--+.-.|. +..+..|++||+-.-..+
T Consensus 349 ~~f~yvk~~~~gp-----d~~s~~Q~lgRvR~l~~~ 379 (824)
T PF02399_consen 349 SMFAYVKPMSYGP-----DMVSVYQMLGRVRSLLDN 379 (824)
T ss_pred EEEEEecCCCCCC-----cHHHHHHHHHHHHhhccC
Confidence 3322211111122 666799999999665543
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.52 E-value=0.016 Score=62.81 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=82.1
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---ccEEE
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRII 163 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~~VI 163 (414)
.+|.++|+| |.+....+...+...........+|..+.+ ...+.|+.+... -++|+|..+..|||+| .+.||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 466788877 888888888888765542233446665544 777788775222 6999999999999996 77899
Q ss_pred EccccccCC-------------------cc--cccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 164 FSTMKKFDG-------------------VE--LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 164 ~~~~~k~dg-------------------~~--~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+.++|-... .. ..|-....+.|-+||+=|.-.+ .|.++.++..
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D--~G~ivllD~R 617 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD--RGVIVLLDKR 617 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC--ceEEEEeccc
Confidence 999885211 11 1122567899999999996654 6999888653
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.19 E-value=0.045 Score=60.93 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---ccEEE
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRII 163 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~~VI 163 (414)
.+|.++|.| |.+..+.++..|..... .+ ...|.-. .|..+.++|+++ +-.||++|+.+-.|||+| ...||
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~-~~-l~Qg~~~--~~~~l~~~F~~~--~~~vLlG~~sFwEGVD~p~~~~~~vi 719 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQV-SH-LAQEKNG--TAYNIKKRFDRG--EQQILLGLGSFWEGVDFVQADRMIEV 719 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCC-cE-EEeCCCc--cHHHHHHHHHcC--CCeEEEecchhhCCCCCCCCCeEEEE
Confidence 367788877 89999999988875533 34 4555322 245688899987 447999999999999995 45677
Q ss_pred EccccccC----------------Ccc-cccC----CHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 164 FSTMKKFD----------------GVE-LRDL----TVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 164 ~~~~~k~d----------------g~~-~~~l----s~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+..+|--. |+. .... -.-.++|-+||.=|...+ .|.|+.++..
T Consensus 720 I~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D--~Gvv~ilD~R 783 (820)
T PRK07246 720 ITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQ--KSAVLILDRR 783 (820)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCC--cEEEEEECCc
Confidence 88877321 111 1111 245689999999998865 6999888764
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.02 E-value=0.052 Score=59.40 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=77.7
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhh----CCCCcccEEEEcCcccccccCC---cc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN----DASSEFDVLVASDAIGMGLNLN---IS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~----~g~~~~~VLVaTdal~~Glnl~---i~ 160 (414)
+|.++|+| |.+..+.++..|..... .-...+|.. .|..+.+.|+ .+ +-.||++|..+..|||+| .+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~~---~~~~ll~~f~~~~~~~--~~~VL~g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGDQ---PRQRLLEKHKKRVDEG--EGSVLFGLQSFAEGLDLPGDYLT 607 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCCc---hHHHHHHHHHHHhccC--CCeEEEEeccccccccCCCCceE
Confidence 34467777 89989989888864332 223446653 4667776666 34 336999999999999997 78
Q ss_pred EEEEccccccCCc--------------cccc-------CCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 161 RIIFSTMKKFDGV--------------ELRD-------LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 161 ~VI~~~~~k~dg~--------------~~~~-------ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
.||+.++|-.... +..+ -....+.|-+||.=|...+ .|.++.++..
T Consensus 608 ~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D--~G~i~ilD~R 674 (697)
T PRK11747 608 QVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQD--RGRVTILDRR 674 (697)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCc--eEEEEEEccc
Confidence 9999988742110 0011 1345689999999998865 6988888764
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=95.95 E-value=0.041 Score=59.10 Aligned_cols=112 Identities=23% Similarity=0.334 Sum_probs=76.2
Q ss_pred CCCCEEEEecHH-HHHH-HHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEE
Q 015049 88 QTGDCIVTFSRH-AIYR-LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 88 ~~g~~Iv~fsr~-~~~~-l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
++|+-|+.||.- .... +-..|...+. +..=+-|+.+-.+|...+..|+...+-.=+|.+|-|-|-|||+ -.+.||+
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~-~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGY-KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCc-eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 367878877532 2222 3333444554 6666799999999999999999875556678999999999999 5888888
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
++... +|-.=+|-.-||-|.|+..+..+...+....
T Consensus 854 hD~dF---------NP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 854 HDIDF---------NPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecCC---------CCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 87653 4444566677777777753333333334433
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.92 E-value=0.047 Score=58.66 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=82.9
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCC--CCcccEEEEcCcccccccC-------
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNL------- 157 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g--~~~~~VLVaTdal~~Glnl------- 157 (414)
..|.++|-| |++....+++.|+.... -...+.|..+ .|....++|+.. .++-.||++|+.+-.|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 467788866 89999999999976543 3456678665 345677777751 0134799999999999999
Q ss_pred -C---ccEEEEcccccc-C------------Cccc---ccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 158 -N---ISRIIFSTMKKF-D------------GVEL---RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 158 -~---i~~VI~~~~~k~-d------------g~~~---~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
| ...||+..+|.- + |... -|-..-.++|-+||-=|...+...|.|..+++.
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 889999888731 1 1110 111245678999999998865336999998764
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.92 E-value=0.15 Score=56.26 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCE-EE-EecHHHHHHHHHHHHHcCCCeEEEecCC-CC-HHHHHHHHHHhhCCCCcccEEEEcCcccccccCC
Q 015049 89 TGDC-IV-TFSRHAIYRLKKAIESRGKHLCSIVYGS-LP-PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 158 (414)
Q Consensus 89 ~g~~-Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~-L~-~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~ 158 (414)
.|.. +| +-|....+.+++.|.+.|+ ...++++. .. ..+-..+++.=+.| .|-|||+.+|||-||.
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi-~h~vLNAk~~~~~~EA~IIa~AG~~G----aVTIATNMAGRGTDIk 506 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGI-PHNLLNAKPENVEREAEIVAQAGRKG----AVTIATNMAGRGTDII 506 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCC-chheeeCCCcchHhHHHHHHhcCCCC----cEEEeccCCCCCcCEe
Confidence 5654 34 4599999999999999998 78888885 23 22333333333333 6999999999999874
No 149
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.67 E-value=0.089 Score=45.64 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=60.9
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---ccEEEEccccccCCc--------------c-ccc--
Q 015049 118 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFSTMKKFDGV--------------E-LRD-- 177 (414)
Q Consensus 118 ~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---i~~VI~~~~~k~dg~--------------~-~~~-- 177 (414)
++.-+..+.+...+.+.|++.. +--||++|..+..|+|+| .+.||+.++|..+.. . ..+
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~-~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEAC-ENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcC-CCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 3444455555788899998751 225999998899999997 778999998753211 0 111
Q ss_pred -----CCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 178 -----LTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 178 -----ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
-....+.|-+||+=|...+ .|.|+.++.
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~l~D~ 137 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND--YGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc--eEEEEEEec
Confidence 1356788999999998865 588877754
No 150
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.26 E-value=0.78 Score=47.21 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=77.0
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc--cccccC-CccEEEEc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRIIFS 165 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal--~~Glnl-~i~~VI~~ 165 (414)
+.++|+. |=-+=-.+.+.|.+.+. ..+.++--.++.+-.+.-..|.+| +.++|+-|-=+ =+=..+ .|++|||+
T Consensus 301 ~~~LIfIPSYfDfVRlRN~lk~~~~-sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 301 SGTLIFIPSYFDFVRLRNYLKKENI-SFVQISEYTSNSDISRARSQFFHG--RKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CcEEEEecchhhhHHHHHHHHhcCC-eEEEecccCCHHHHHHHHHHHHcC--CceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 3345544 87777788888887776 888888888888888888899998 89999999732 222334 48999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHHhhC
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLL 218 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~~l~ 218 (414)
++|.+ |.=..++....+.......+.+...|+++ ..-|.-.|++...
T Consensus 378 ~~P~~------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 378 GPPEN------PQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred CCCCC------hhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99972 22334444444444331111123455544 4445555554443
No 151
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.03 E-value=0.088 Score=56.10 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=73.9
Q ss_pred EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccccc
Q 015049 92 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKK 169 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k 169 (414)
++++| --+...-+-..|...+. ...-+-|+..-..|..+.+.|... ..+=+|.+|-|-|.|||+ ..++||||+..-
T Consensus 1047 vL~yfQMTkM~dl~EdYl~yr~Y-~ylRLDGSsk~~dRrd~vrDwQ~s-diFvFLLSTRAGGLGINLTAADTViFYdSDW 1124 (1185)
T KOG0388|consen 1047 VLMYFQMTKMIDLIEDYLVYRGY-TYLRLDGSSKASDRRDVVRDWQAS-DIFVFLLSTRAGGLGINLTAADTVIFYDSDW 1124 (1185)
T ss_pred EEehhHHHHHHHHHHHHHHhhcc-ceEEecCcchhhHHHHHHhhccCC-ceEEEEEecccCcccccccccceEEEecCCC
Confidence 55666 44566667777777776 666779999999999999999985 357789999999999999 699999998553
Q ss_pred cCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 170 FDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 170 ~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
++.-=.|-..||-|-|+.
T Consensus 1125 ---------NPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1125 ---------NPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred ---------CcchhhHHHHHHHhccCc
Confidence 555556777778787765
No 152
>COG4889 Predicted helicase [General function prediction only]
Probab=94.38 E-value=0.13 Score=56.25 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=63.7
Q ss_pred eEEEec--CCCCHHHHHHHHHHhhC-CCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhccc
Q 015049 115 LCSIVY--GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190 (414)
Q Consensus 115 ~v~~ih--g~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRA 190 (414)
++++-| |.|.--+|...+..-+. ..++++||-----+..|+|+| .+.|||.+..+ +.-+++|-+||+
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~---------smVDIVQaVGRV 569 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS---------SMVDIVQAVGRV 569 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch---------hHHHHHHHHHHH
Confidence 566555 89999999555543322 224899998888999999998 99999998877 889999999999
Q ss_pred CCCCCCCCceEEEE
Q 015049 191 GRYGSKFPVGEVTC 204 (414)
Q Consensus 191 GR~g~~~~~G~v~~ 204 (414)
=|...+...|+|+.
T Consensus 570 MRKa~gK~yGYIIL 583 (1518)
T COG4889 570 MRKAKGKKYGYIIL 583 (1518)
T ss_pred HHhCcCCccceEEE
Confidence 99766545688764
No 153
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.13 E-value=0.1 Score=47.44 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=38.7
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 57 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~ 57 (414)
..+++++|+||+|.+.+..++..+...+..++.....++.+++..+.+..+..
T Consensus 141 ~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~ 193 (203)
T cd00268 141 LSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred hhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHH
Confidence 46789999999999987777888887777776555555555555555666553
No 154
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.07 E-value=0.44 Score=41.36 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHhhCCCC-cccEEEEcCc--ccccccCC---ccEEEEccccccCCc--------------c--------cccC
Q 015049 127 TRTRQATRFNDASS-EFDVLVASDA--IGMGLNLN---ISRIIFSTMKKFDGV--------------E--------LRDL 178 (414)
Q Consensus 127 ~R~~~~~~F~~g~~-~~~VLVaTda--l~~Glnl~---i~~VI~~~~~k~dg~--------------~--------~~~l 178 (414)
+.....+.|++... .-.||+++.- +..|||+| .+.||+.++|..... . ..+.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888887411 0148888887 99999996 678999998853211 0 0112
Q ss_pred CHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 179 s~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
....+.|-+||+=|...+ .|.++.++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D--~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKND--YGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccc--eEEEEEEec
Confidence 346789999999998865 588877754
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.04 E-value=0.2 Score=54.93 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCC------CeEEEecCCCCHHHHHHHHHHhhCC--CCcccEEEEc--Cccccccc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGK------HLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVAS--DAIGMGLN 156 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~------~~v~~ihg~L~~e~R~~~~~~F~~g--~~~~~VLVaT--dal~~Gln 156 (414)
.+|.++||| |...-+.+.+.+.+.+. .+-.++-+ -...++..+++.|++. .++--||+|+ ..+..|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 467788877 88888888777664321 01222222 2225778889999541 0122499999 89999999
Q ss_pred CC---ccEEEEccccccCCc------------------cc----ccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 157 LN---ISRIIFSTMKKFDGV------------------EL----RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 157 l~---i~~VI~~~~~k~dg~------------------~~----~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
++ .+.||+.++|..... +. ...-...+.|-+||+=|...+ .|.|+.++.
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D--~G~iillD~ 673 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD--YGSIVLLDK 673 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc--eEEEEEEeh
Confidence 95 889999998852110 00 011235678999999998865 688888754
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.99 E-value=0.53 Score=53.08 Aligned_cols=98 Identities=19% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCCEEEEec--HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEc
Q 015049 89 TGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFS 165 (414)
Q Consensus 89 ~g~~Iv~fs--r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~ 165 (414)
.|.-+..|| -+..+-|-.+|.-+|. -..-+-|...-|.|...+++||....-+-++.+|-.-|.|||+ ..++||||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgy-lY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGY-LYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcce-EEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 344444453 3445556666766665 5556689999999999999999864346678899999999999 79999999
Q ss_pred cccccCCcccccCCHHHHHhhhccc
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRA 190 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRA 190 (414)
+.. |+.. -.-...+--||+|++
T Consensus 1354 DsD-wNPt--MDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1354 DSD-WNPT--MDAQAQDRCHRIGQT 1375 (1958)
T ss_pred cCC-CCch--hhhHHHHHHHhhcCc
Confidence 854 2211 000334555566655
No 157
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=93.95 E-value=0.17 Score=55.66 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=62.8
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCc--ccEEEEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCC
Q 015049 116 CSIVYGSLPPETRTRQATRFNDASSE--FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 192 (414)
Q Consensus 116 v~~ihg~L~~e~R~~~~~~F~~g~~~--~~VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR 192 (414)
-.-+-|+...+.|....+.||+..+. .-.||+|-|-+.|||+ ...+||+++..- +++.=.|-+=|+=|
T Consensus 1191 yyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW---------NPSyDtQSIFRvyR 1261 (1567)
T KOG1015|consen 1191 YYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASW---------NPSYDTQSIFRVYR 1261 (1567)
T ss_pred eEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEeccc---------CCccchHHHHHHHh
Confidence 34457999999999999999997432 3479999999999998 799999887654 66667788889999
Q ss_pred CCCCCCceEEEEe
Q 015049 193 YGSKFPVGEVTCL 205 (414)
Q Consensus 193 ~g~~~~~G~v~~~ 205 (414)
+|+. -.-+++.|
T Consensus 1262 fGQt-KPvyiYRf 1273 (1567)
T KOG1015|consen 1262 FGQT-KPVYIYRF 1273 (1567)
T ss_pred hcCc-Cceeehhh
Confidence 9986 33444433
No 158
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=93.89 E-value=0.14 Score=56.41 Aligned_cols=95 Identities=23% Similarity=0.237 Sum_probs=72.2
Q ss_pred EEEEecHHHHHHHHH-HHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCc-ccEEEEcCcccccccC-CccEEEEcccc
Q 015049 92 CIVTFSRHAIYRLKK-AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMK 168 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~-~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~-~~VLVaTdal~~Glnl-~i~~VI~~~~~ 168 (414)
+++||....+..+-+ .|.-.+. +.--+-|....++|-...+.|+.+++. ..+|.+|-+-|.|+|+ -.++||+++..
T Consensus 729 VLlF~qMTrlmdimEdyL~~~~~-kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsd 807 (1157)
T KOG0386|consen 729 VLLFSQMTRLMDILEDYLQIREY-KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSD 807 (1157)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhh-heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCC
Confidence 444554444443332 3333333 555678999999999999999999776 5678899999999999 59999988755
Q ss_pred ccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 169 KFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 169 k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
- ++....|+--||-|-|..
T Consensus 808 w---------np~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 808 W---------NPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred C---------CchhHHHHHHHHHHhhch
Confidence 4 788899999999999876
No 159
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.34 E-value=0.16 Score=48.97 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHhhCCCCcccEEEEcCcccccccCCcc--------EE-EEccccccCCcccccCCHHHHHhhhcccCCCCCCCCce
Q 015049 130 RQATRFNDASSEFDVLVASDAIGMGLNLNIS--------RI-IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 200 (414)
Q Consensus 130 ~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~--------~V-I~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G 200 (414)
...+.|.+| +.+|+|-|++.+.||.+..+ +| |.... |++....+|..||+-|.|+..+.-
T Consensus 52 ~e~~~F~~g--~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~---------pwsad~aiQ~~GR~hRsnQ~~~P~ 120 (278)
T PF13871_consen 52 AEKQAFMDG--EKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL---------PWSADKAIQQFGRTHRSNQVSAPE 120 (278)
T ss_pred HHHHHHhCC--CceEEEEecccccccchhccccCCCCCceEEEEeeC---------CCCHHHHHHHhccccccccccCCE
Confidence 567799998 88999999999999998532 22 22233 449999999999999999863334
Q ss_pred EEEEe
Q 015049 201 EVTCL 205 (414)
Q Consensus 201 ~v~~~ 205 (414)
+++..
T Consensus 121 y~~l~ 125 (278)
T PF13871_consen 121 YRFLV 125 (278)
T ss_pred EEEee
Confidence 54443
No 160
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.31 Score=54.22 Aligned_cols=62 Identities=10% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCEEE-EecHHHHHHHHHHHHHcC----CCeE-EEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 89 TGDCIV-TFSRHAIYRLKKAIESRG----KHLC-SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 89 ~g~~Iv-~fsr~~~~~l~~~L~~~~----~~~v-~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.+.+.+ +.|+.-+.++.+.|.+.. ...+ .++||.||..+++...++|.+| +++|||+|+.+-
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g--dfdIlitTs~FL 192 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG--DFDILITTSQFL 192 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC--CccEEEEeHHHH
Confidence 345555 449888888888776533 1122 2389999999999999999998 899999999753
No 161
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.49 E-value=0.083 Score=57.64 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=57.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccccc--cCCc-------ccccCCHHHHHh
Q 015049 116 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKK--FDGV-------ELRDLTVPEVKQ 185 (414)
Q Consensus 116 v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k--~dg~-------~~~~ls~~~~~Q 185 (414)
+-..|+-++.++..++.+....| ..|++++|++++..+.+ ++..||....-+ .-.. .....+.....|
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~g--v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEG--VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccchhhcccHhhhhccCccccc--ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 44568888888888888888877 88999999999999997 677777654322 1111 123347788999
Q ss_pred hhcccCCCCC
Q 015049 186 IAGRAGRYGS 195 (414)
Q Consensus 186 raGRAGR~g~ 195 (414)
|-||+||...
T Consensus 755 r~gr~grvR~ 764 (1282)
T KOG0921|consen 755 RKGRAGRVRP 764 (1282)
T ss_pred hcccCceecc
Confidence 9999999764
No 162
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.09 E-value=0.34 Score=42.64 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 58 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~ 58 (414)
.+++++||||+|++....+...+...+..++.....++.++++..........
T Consensus 128 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 128 SNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred hHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHH
Confidence 46889999999999865677777777766643344444444554555555544
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.10 E-value=1 Score=49.31 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=57.0
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTM 167 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~ 167 (414)
.++|.+ ++..+.++.+.+.+.....++++||++++.+|.++..+...| +.+|+|+|..... +.+ ++..||+-..
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g--~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG--EAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC--CCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 455544 999999999988764333799999999999999999999988 7899999985332 334 3777776553
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.91 E-value=1 Score=47.50 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=56.9
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTM 167 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~ 167 (414)
.+++.. ++.-+.++.+.|++.....++++||++++.+|..+.....+| +.+|+|+|...-. ..+ ++..||+-..
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g--~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG--EILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC--CCCEEECChHHHc-CcccCCCEEEEECC
Confidence 455544 899999999888765334799999999999999999998888 7899999986432 233 4777876553
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.27 E-value=1.6 Score=47.48 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=44.8
Q ss_pred HHHHHhhCCCCcccEEEEcC----cccccccCCccEEEEcc------ccccCCcccccCCHHHHHhhhcccCCCCCCCCc
Q 015049 130 RQATRFNDASSEFDVLVASD----AIGMGLNLNISRIIFST------MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 199 (414)
Q Consensus 130 ~~~~~F~~g~~~~~VLVaTd----al~~Glnl~i~~VI~~~------~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~ 199 (414)
.+.+.|. + +.+|||+|. .+. | .+..|++.+ .+.|... .-+...+.|-+|||||.+..
T Consensus 463 ~~l~~~~-~--~~~IlVGTqgaepm~~-g---~~~lV~ildaD~~L~~pDfRA~---Er~~qll~qvagragr~~~~--- 529 (665)
T PRK14873 463 QVVDTVD-A--GPALVVATPGAEPRVE-G---GYGAALLLDAWALLGRQDLRAA---EDTLRRWMAAAALVRPRADG--- 529 (665)
T ss_pred HHHHhhc-c--CCCEEEECCCCccccc-C---CceEEEEEcchhhhcCCCcChH---HHHHHHHHHHHHhhcCCCCC---
Confidence 5788886 4 789999998 454 3 245555443 2333221 11577889999999998866
Q ss_pred eEEEEecCCCHHHHHH
Q 015049 200 GEVTCLDSEDLPLLHK 215 (414)
Q Consensus 200 G~v~~~~~~d~~~l~~ 215 (414)
|.|+.....+.+.++.
T Consensus 530 G~V~iq~~p~~~~~~~ 545 (665)
T PRK14873 530 GQVVVVAESSLPTVQA 545 (665)
T ss_pred CEEEEEeCCCCHHHHH
Confidence 6555433333343433
No 166
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=89.15 E-value=2 Score=44.43 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCccc-EEEEcCcccccccCC-ccEEEEccccccCCcccccCCHH
Q 015049 104 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 181 (414)
Q Consensus 104 l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~-VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~ 181 (414)
+.-.|.+.|. .|.-+-|+|+|..|...++.|++.. .++ +||+-.|-|..+|+- ...|.++ .|-|+ ++
T Consensus 654 i~~rL~kaGf-scVkL~GsMs~~ardatik~F~nd~-~c~vfLvSLkAGGVALNLteASqVFmm-DPWWN--------pa 722 (791)
T KOG1002|consen 654 IEWRLGKAGF-SCVKLVGSMSPAARDATIKYFKNDI-DCRVFLVSLKAGGVALNLTEASQVFMM-DPWWN--------PA 722 (791)
T ss_pred HHHHhhccCc-eEEEeccCCChHHHHHHHHHhccCC-CeEEEEEEeccCceEeeechhceeEee-ccccc--------HH
Confidence 3344555666 7888899999999999999998853 444 467777888888985 5555544 46554 44
Q ss_pred HHHhhhcccCCCCCCCCceEEE
Q 015049 182 EVKQIAGRAGRYGSKFPVGEVT 203 (414)
Q Consensus 182 ~~~QraGRAGR~g~~~~~G~v~ 203 (414)
-=+|--.|.-|-|+-.+.-++.
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvr 744 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVR 744 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEE
Confidence 4455555555555532333333
No 167
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.87 E-value=1.4 Score=48.22 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=60.2
Q ss_pred CEEE-EecHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-ccccC-CccEEE
Q 015049 91 DCIV-TFSRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL-NISRII 163 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-~Glnl-~i~~VI 163 (414)
.+++ +.|+.-+.+.++.+.+. +. +++++||+++..+|..+.+...+| +.+|+|+|.+.- ..+++ ++..||
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i-~v~ll~G~~~~~~r~~~~~~l~~g--~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGI-RVALLTGSLKGKERREILEAIASG--EADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCc-EEEEEcCCCCHHHHHHHHHHHhCC--CCCEEEchHHHhcccchhcccceEE
Confidence 3444 44998888887776653 44 899999999999999999999998 899999998544 34666 588888
Q ss_pred Ecccccc
Q 015049 164 FSTMKKF 170 (414)
Q Consensus 164 ~~~~~k~ 170 (414)
+-....|
T Consensus 389 IDE~Hrf 395 (681)
T PRK10917 389 IDEQHRF 395 (681)
T ss_pred Eechhhh
Confidence 8666554
No 168
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.10 E-value=2.3 Score=46.06 Aligned_cols=77 Identities=12% Similarity=0.225 Sum_probs=60.1
Q ss_pred CEEE-EecHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc-cccC-CccEEE
Q 015049 91 DCIV-TFSRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM-GLNL-NISRII 163 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~-Glnl-~i~~VI 163 (414)
++++ +.|+.-+.+.++.+.+. +. +++++||+++...|..+.+...+| +.+|+|+|.++-. ++++ .+..||
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi-~v~lltg~~~~~~r~~~~~~i~~g--~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGI-EVALLTGSLKGKRRKELLETIASG--QIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCc-EEEEEecCCCHHHHHHHHHHHhCC--CCCEEEecHHHHhccccccccceEE
Confidence 4555 44999888888777653 44 899999999999999999999998 8899999996544 3555 488888
Q ss_pred Ecccccc
Q 015049 164 FSTMKKF 170 (414)
Q Consensus 164 ~~~~~k~ 170 (414)
+-....|
T Consensus 363 IDEaH~f 369 (630)
T TIGR00643 363 IDEQHRF 369 (630)
T ss_pred Eechhhc
Confidence 7666554
No 169
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=86.83 E-value=0.12 Score=57.45 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=56.9
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC------CcEEEEecCCChHHHHHHHHHcCCc--eEEeeccccCCCc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAVPLIQQILQVTGDD--VKVQSYERLSPLV 75 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a------~~i~l~g~~~~~~~i~~l~~~~~~~--~~v~~~~r~~pl~ 75 (414)
..+++..+|+||+|++++ +||+.++....+.+. ..+...|.++.+.+..++++|.+.. +...+..|++|+.
T Consensus 1043 ~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~ 1121 (1230)
T KOG0952|consen 1043 YVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLE 1121 (1230)
T ss_pred hhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCce
Confidence 346889999999999984 799998877666543 5578889999998899999998654 4466677888887
Q ss_pred c
Q 015049 76 P 76 (414)
Q Consensus 76 ~ 76 (414)
+
T Consensus 1122 ~ 1122 (1230)
T KOG0952|consen 1122 V 1122 (1230)
T ss_pred E
Confidence 4
No 170
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.47 E-value=4 Score=44.04 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=63.9
Q ss_pred HHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE-EcCcccccccC-CccEEEEccccccCCcccccCCHHHHH
Q 015049 107 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV-ASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVK 184 (414)
Q Consensus 107 ~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV-aTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~ 184 (414)
.|.+.|. ....+||......|..+++.|+...++.+|++ +-.+-|-|+|+ ...++|+.++.- ++.-=.
T Consensus 765 hi~~~g~-~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHW---------NPaLEq 834 (901)
T KOG4439|consen 765 HIQKGGH-IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHW---------NPALEQ 834 (901)
T ss_pred HHhhCCe-eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEeccc---------CHHHHH
Confidence 3444454 67788999999999999999988766566654 55677889998 588999998875 777777
Q ss_pred hhhcccCCCCCC
Q 015049 185 QIAGRAGRYGSK 196 (414)
Q Consensus 185 QraGRAGR~g~~ 196 (414)
|-.-|.=|.|++
T Consensus 835 QAcDRIYR~GQk 846 (901)
T KOG4439|consen 835 QACDRIYRMGQK 846 (901)
T ss_pred HHHHHHHHhccc
Confidence 888899999987
No 171
>PRK14873 primosome assembly protein PriA; Provisional
Probab=86.15 E-value=2.6 Score=45.97 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEcc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFST 166 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~ 166 (414)
+++||.+ ....+.++.+.|..... ..++++|+++++.+|.+...+..+| +.+|+|.|-.+-- .-+ +...||+.+
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G--~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG--QARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC--CCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 3566655 88888888888876543 4799999999999999999999998 8899999987432 223 255666544
No 172
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=85.32 E-value=1.7 Score=47.91 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=60.7
Q ss_pred CCCEEE--EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccE---E
Q 015049 89 TGDCIV--TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR---I 162 (414)
Q Consensus 89 ~g~~Iv--~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~---V 162 (414)
+|+.|+ ..|-...+.+.+.|.+.|+ +..++.+.-...+-..++..-..| -|-|||+.+|+|-||- -.. |
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i-~h~VLNAk~h~~EA~Iia~AG~~g----aVTiATNMAGRGTDIkLg~~~~~V 502 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGI-PHNVLNAKNHAREAEIIAQAGQPG----AVTIATNMAGRGTDIKLGGNPEFV 502 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCC-CceeeccccHHHHHHHHhhcCCCC----ccccccccccCCcccccCCCHHHH
Confidence 555444 3378888999999998888 556666665544444444444444 5899999999999973 222 2
Q ss_pred EEccccccCCcccccCCHHHHH-hhhcccCCCCCC
Q 015049 163 IFSTMKKFDGVELRDLTVPEVK-QIAGRAGRYGSK 196 (414)
Q Consensus 163 I~~~~~k~dg~~~~~ls~~~~~-QraGRAGR~g~~ 196 (414)
.-.+--.--|. ..-....+- |.-||+||.|-.
T Consensus 503 ~~lGGL~VIgT--ERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 503 MELGGLHVIGT--ERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred HHhCCcEEEec--ccchhhHHHHHhhcccccCCCc
Confidence 11100000000 011333444 999999999943
No 173
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=84.47 E-value=1.1 Score=36.71 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.1
Q ss_pred CCCcCEEEEecccccCCCCcch
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGF 26 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~ 26 (414)
...++++||||+|.+.......
T Consensus 101 ~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 101 LKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred hhcCCEEEEeCHHHHhhcchHH
Confidence 4578999999999998655443
No 174
>PRK14701 reverse gyrase; Provisional
Probab=82.25 E-value=4.2 Score=48.74 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=54.8
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC-----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccc-c----cCCc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG-----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG-L----NLNI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~-----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~G-l----nl~i 159 (414)
.++|.+ ||.-+.++...+...+ ...++++||+++.+++..+.+.+.+| +.+|||+|.-.-.- + +..+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g--~~dILV~TPgrL~~~~~~l~~~~i 201 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG--DFDILVTTAQFLARNFPEMKHLKF 201 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECCchhHHhHHHHhhCCC
Confidence 466544 9999999888887632 12678899999999999999999987 88999999853221 1 1136
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.+|+-...
T Consensus 202 ~~iVVDEAD 210 (1638)
T PRK14701 202 DFIFVDDVD 210 (1638)
T ss_pred CEEEEECce
Confidence 677765443
No 175
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=81.54 E-value=3.4 Score=47.97 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCEEEE-ecHHHHHHHHHHHHHcC----CC--eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc-ccc-C--C
Q 015049 90 GDCIVT-FSRHAIYRLKKAIESRG----KH--LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM-GLN-L--N 158 (414)
Q Consensus 90 g~~Iv~-fsr~~~~~l~~~L~~~~----~~--~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~-Gln-l--~ 158 (414)
..++|. .||.-+.++.+.+.+.. .. .++++||+++..++..+.+.+.+| ..+|||+|...-. .++ + .
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~--~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG--DFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHHHHHHHhcCC
Confidence 446554 49999999888877533 21 234689999999999999999987 7899999984221 111 1 3
Q ss_pred ccEEEEccccc
Q 015049 159 ISRIIFSTMKK 169 (414)
Q Consensus 159 i~~VI~~~~~k 169 (414)
++.+|+-....
T Consensus 200 ~~~iVvDEaD~ 210 (1171)
T TIGR01054 200 FDFIFVDDVDA 210 (1171)
T ss_pred CCEEEEeChHh
Confidence 67777765444
No 176
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.49 E-value=0.72 Score=40.15 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=18.8
Q ss_pred CCcCEEEEecccccCCCCcchhHHHH
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRA 31 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~ 31 (414)
.+++++||||+|.+.+..++..+..+
T Consensus 118 ~~~~~iViDE~h~l~~~~~~~~~~~i 143 (169)
T PF00270_consen 118 SRLSLIVIDEAHHLSDETFRAMLKSI 143 (169)
T ss_dssp TTESEEEEETHHHHHHTTHHHHHHHH
T ss_pred ccceeeccCcccccccccHHHHHHHH
Confidence 45999999999999865455544443
No 177
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=78.89 E-value=7.7 Score=43.98 Aligned_cols=77 Identities=8% Similarity=0.164 Sum_probs=59.9
Q ss_pred CEEE-EecHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-ccccC-CccEEE
Q 015049 91 DCIV-TFSRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL-NISRII 163 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-~Glnl-~i~~VI 163 (414)
+++| +.|+.-+.+..+.+.+. +. +++.++|+.+..++..+.+.+++| +.+|+|+|..+- ..+.+ ++..||
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i-~v~~Lsg~~~~~e~~~~~~~l~~g--~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPV-TIELLSRFRSAKEQNEILKELASG--KIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCc-EEEEEeccccHHHHHHHHHHHHcC--CceEEEchHHHhhCCCCcccCCEEE
Confidence 4544 44999998888777653 33 788899999999999999999998 899999998543 34566 588888
Q ss_pred Ecccccc
Q 015049 164 FSTMKKF 170 (414)
Q Consensus 164 ~~~~~k~ 170 (414)
+-....|
T Consensus 579 IDEahrf 585 (926)
T TIGR00580 579 IDEEQRF 585 (926)
T ss_pred eeccccc
Confidence 8776655
No 178
>PRK10689 transcription-repair coupling factor; Provisional
Probab=77.46 E-value=9.2 Score=44.44 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=58.2
Q ss_pred CEEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-cccccC-CccEEEE
Q 015049 91 DCIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-GMGLNL-NISRIIF 164 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-~~Glnl-~i~~VI~ 164 (414)
+++| +.|+.-+.++.+.+.+.. ..++.+++|+.+..++..+.+..++| ..+|+|+|..+ ...+++ .+..||+
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g--~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG--KIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC--CCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 4544 449999998888777532 12688899999999999999999887 88999999743 334555 5888887
Q ss_pred cccccc
Q 015049 165 STMKKF 170 (414)
Q Consensus 165 ~~~~k~ 170 (414)
-....|
T Consensus 729 DEahrf 734 (1147)
T PRK10689 729 DEEHRF 734 (1147)
T ss_pred echhhc
Confidence 655554
No 179
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=76.72 E-value=44 Score=33.94 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=71.8
Q ss_pred EEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc-cc---ccccc-ccCCCCEEEEe----cHHHHHHHHHHHHH
Q 015049 40 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN-VP---LGSFS-NIQTGDCIVTF----SRHAIYRLKKAIES 110 (414)
Q Consensus 40 i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~-~~---l~~l~-~i~~g~~Iv~f----sr~~~~~l~~~L~~ 110 (414)
+.+.-+....+..+.++..+|.++.+....|...-.... .. ...+. .++..++|++= |=.+....++.|.+
T Consensus 210 VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~ 289 (382)
T PRK06827 210 MVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKS 289 (382)
T ss_pred EEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 444445666777888888888777665555543211100 00 01122 35444566542 67778888889988
Q ss_pred cCCC--eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 111 RGKH--LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 111 ~~~~--~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.|.. .+++.||-++ ..-.++.+.|.+| .++-+|+||++.
T Consensus 290 ~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g--~i~~iv~TdTi~ 330 (382)
T PRK06827 290 RGAKKIIVAATFGFFT-NGLEKFDKAYEEG--YFDRIIGTNLVY 330 (382)
T ss_pred cCCCEEEEEEEeecCh-HHHHHHHhhcccC--CCCEEEEeCCCc
Confidence 7753 4567799999 7777777888887 789999999963
No 180
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.52 E-value=9.5 Score=40.10 Aligned_cols=94 Identities=18% Similarity=0.342 Sum_probs=60.8
Q ss_pred EEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-Ccc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL-NIS 160 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl-~i~ 160 (414)
++| +.||.-+.++.+...+.+ ..++.++|||.|.. .|++..+. .++|+|||. .+.+| +|+ .+.
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~---~Q~~~l~~---gvdiviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG---PQLRDLER---GVDVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCcc---HHHHHHhc---CCcEEEeCChHHHHHHHcCCcccccee
Confidence 444 449999999888777644 23588999999976 45555555 479999996 56777 666 488
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCC
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 192 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR 192 (414)
++|.-.......-+.++ .+..+++.++|.-|
T Consensus 242 ylVLDEADrMldmGFe~-qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 242 YLVLDEADRMLDMGFEP-QIRKILSQIPRPDR 272 (519)
T ss_pred EEEeccHHhhhccccHH-HHHHHHHhcCCCcc
Confidence 88865433211111111 45566666666655
No 181
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=73.68 E-value=5 Score=44.03 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=48.8
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEE
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 164 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~ 164 (414)
++||.+ -...+.++.+.++..-..+++++|++|++.+|.....+..+| +.+|+|-|-.+- =.-+ +...||+
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G--~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG--EARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC--CceEEEEechhh-cCchhhccEEEE
Confidence 344433 444555555555443335899999999999999999999998 899999997632 1222 2555664
No 182
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=72.76 E-value=3.9 Score=43.06 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCC
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPA 47 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~ 47 (414)
.|...++++.||||+||++- .+|...|.-+ |...+.++.+++
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~----~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSK----QAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred CCccccceEEEEecHHhhhH----HHHHHHhcccccCccCeEEEEecC
Confidence 46678999999999999972 3455555444 344444444443
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=72.38 E-value=8.8 Score=42.85 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=16.2
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHH
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIES 110 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~ 110 (414)
++.+||++ .++.|.++.+.|..
T Consensus 295 ~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 295 PGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCcEEEEEcchHHHHHHHHHHHh
Confidence 34566655 79999999888854
No 184
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=72.00 E-value=32 Score=35.53 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=48.8
Q ss_pred EEE-EecHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----cccc-cccC-Cc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGM-GLNL-NI 159 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~-Glnl-~i 159 (414)
++| +.||.-+.++.+.++..+ ..++..+||+.+...+... ++. ..+|+|+|. .+.. .+++ .+
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~~---~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LEH---GAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hcC---CCCEEEEChHHHHHHHHcCCccHHHC
Confidence 444 559999999888777532 2378889999998765433 333 568999994 3333 3566 58
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 149 ~~lViDEad 157 (460)
T PRK11776 149 NTLVLDEAD 157 (460)
T ss_pred CEEEEECHH
Confidence 888876554
No 185
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=71.84 E-value=9.2 Score=40.30 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=40.9
Q ss_pred EEEEecHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIVTFSRHAIYRLKKAIESR---GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~~~---~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.||+.||.-+.++++.|... ...+++.+.|||....+.++++. .+ +|+|||.-
T Consensus 267 LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~--~p----~IVVATPG 322 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ--RP----DIVVATPG 322 (731)
T ss_pred EEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc--CC----CEEEecch
Confidence 34455999999999998752 23389999999998877777665 33 69999983
No 186
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=71.30 E-value=40 Score=33.21 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=72.1
Q ss_pred EEecCCChHHHHHHHHHcCCceEEeecccc-CCCcccccccccccccCCCCEEEEe----cHHHHHHHHHHHHHcCCCe-
Q 015049 42 LCGDPAAVPLIQQILQVTGDDVKVQSYERL-SPLVPLNVPLGSFSNIQTGDCIVTF----SRHAIYRLKKAIESRGKHL- 115 (414)
Q Consensus 42 l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~-~pl~~~~~~l~~l~~i~~g~~Iv~f----sr~~~~~l~~~L~~~~~~~- 115 (414)
+.-+...+...+.+++.++..+.+....|. .+-..... ....+++..+||++= |=.+.-..++.|.+.|-.+
T Consensus 168 VSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~--~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V 245 (314)
T COG0462 168 VSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVM--NLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKV 245 (314)
T ss_pred ECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEe--ecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeE
Confidence 333455667888999999988888777785 43322221 233456666777653 5566667778888888644
Q ss_pred -EEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccc
Q 015049 116 -CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 154 (414)
Q Consensus 116 -v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~G 154 (414)
+++.||=++ ....++++++ .++=+|+||++...
T Consensus 246 ~a~~tH~vfs----~~a~~~l~~~--~i~~vivTnTi~~~ 279 (314)
T COG0462 246 YAAATHGVFS----GAALERLEAS--AIDEVIVTDTIPLP 279 (314)
T ss_pred EEEEEchhhC----hHHHHHHhcC--CCCEEEEeCCcccc
Confidence 466699998 4566777776 78899999998765
No 187
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.24 E-value=17 Score=37.87 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCEEEE-ecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-cc------c-cC-Cc
Q 015049 90 GDCIVT-FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MG------L-NL-NI 159 (414)
Q Consensus 90 g~~Iv~-fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-~G------l-nl-~i 159 (414)
+.+||+ .++.-+.+....|...|. .++.++|+.+.+++..+....++| +++++++|.-.- .. + .. .+
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi-~~~~l~~~~~~~~~~~i~~~~~~~--~~~il~~TPe~l~~~~~~~~~l~~~~~i 128 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGI-PATFLNSSQSKEQQKNVLTDLKDG--KIKLLYVTPEKCSASNRLLQTLEERKGI 128 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHcCchhHHHHHHhcCCc
Confidence 445554 499888888888888887 788999999999999999998887 899999998422 11 2 22 47
Q ss_pred cEEEEccccc
Q 015049 160 SRIIFSTMKK 169 (414)
Q Consensus 160 ~~VI~~~~~k 169 (414)
..||+-....
T Consensus 129 ~~iViDEaH~ 138 (470)
T TIGR00614 129 TLIAVDEAHC 138 (470)
T ss_pred CEEEEeCCcc
Confidence 7888765443
No 188
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=68.90 E-value=4.9 Score=38.33 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=25.2
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEE-EEecC
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH-LCGDP 46 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~-l~g~~ 46 (414)
++++|||||+|.+- ..+.....++..+.+.... +.|++
T Consensus 134 ~~~~vIvDEaH~~k--~~~s~~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 134 KWDRVIVDEAHRLK--NKDSKRYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp EEEEEEETTGGGGT--TTTSHHHHHHHCCCECEEEEE-SS-
T ss_pred cceeEEEecccccc--cccccccccccccccceEEeecccc
Confidence 48899999999995 4556666777777754443 34443
No 189
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=67.97 E-value=20 Score=38.49 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=56.7
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc------ccc-CCcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM------GLN-LNIS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~------Gln-l~i~ 160 (414)
.|.++|.. ++.-+.+....|...|. .++.+||+++.+++..+.+....| .+++++.|.---. -++ .++.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi-~~~~~~s~~~~~~~~~~~~~l~~~--~~~il~~tpe~l~~~~~~~~l~~~~l~ 129 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGV-AAAYLNSTLSAKEQQDIEKALVNG--ELKLLYVAPERLEQDYFLNMLQRIPIA 129 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhCC--CCCEEEEChhHhcChHHHHHHhcCCCC
Confidence 34455544 88877777788888887 899999999999999999999887 8999998864221 122 2577
Q ss_pred EEEEcccc
Q 015049 161 RIIFSTMK 168 (414)
Q Consensus 161 ~VI~~~~~ 168 (414)
.||+-...
T Consensus 130 ~iViDEaH 137 (591)
T TIGR01389 130 LVAVDEAH 137 (591)
T ss_pred EEEEeCCc
Confidence 78865443
No 190
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=67.35 E-value=3.3 Score=36.11 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=11.0
Q ss_pred CCCcCEEEEeccccc
Q 015049 5 VSDYDCAVIDEIQML 19 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i 19 (414)
..+|+++|+||+|..
T Consensus 93 ~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 93 LKNYDVIIMDECHFT 107 (148)
T ss_dssp TTS-SEEEECTTT--
T ss_pred ccCccEEEEeccccC
Confidence 468999999999974
No 191
>PRK11054 helD DNA helicase IV; Provisional
Probab=67.13 E-value=1.2e+02 Score=33.43 Aligned_cols=156 Identities=15% Similarity=0.228 Sum_probs=79.6
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhC-CCCCcEEEEecCCC---------hHHHHHHHHHcCCc--eEEeeccccC
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLG-ICANELHLCGDPAA---------VPLIQQILQVTGDD--VKVQSYERLS 72 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~-l~a~~i~l~g~~~~---------~~~i~~l~~~~~~~--~~v~~~~r~~ 72 (414)
...+++|+|||+|-++ .--+.+-..+.+ .+...+.++|+..- ......+....+.. .......|.+
T Consensus 428 ~~~~~~IlVDE~QD~s--~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY~frGa~~~~~~~f~~~f~~~~~~~L~~nYRs~ 505 (684)
T PRK11054 428 ISPWKHILVDEFQDIS--PQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGADLSLTTAFHERFGEGDRCHLDTTYRFN 505 (684)
T ss_pred hhcccEEEEEccccCC--HHHHHHHHHHhccCCCCeEEEEECCCccccccCCCChHHHHHHHhhcCCCeEEEeCCCCCCC
Confidence 4569999999999886 222333333332 23456777776532 33344454444432 3344444443
Q ss_pred CCc--ccc-------ccc-ccccccCCC--CEEEEecHHHHHHHHHHHHHc--CCCeEEEecC--CCCHHHHHHHHHHhh
Q 015049 73 PLV--PLN-------VPL-GSFSNIQTG--DCIVTFSRHAIYRLKKAIESR--GKHLCSIVYG--SLPPETRTRQATRFN 136 (414)
Q Consensus 73 pl~--~~~-------~~l-~~l~~i~~g--~~Iv~fsr~~~~~l~~~L~~~--~~~~v~~ihg--~L~~e~R~~~~~~F~ 136 (414)
+-. ... ..+ +.+.....| ..+..+....++.+...|.+. ....+++++- ..-|+........|.
T Consensus 506 ~~I~~~An~~i~~n~~~~~k~l~s~~~g~~p~v~~~~~~~~~~il~~l~~~~~~~~~I~IL~R~~~~~~~~l~~~~~~~~ 585 (684)
T PRK11054 506 SRIGEVANRFIQQNPHQLKKPLNSLTKGDKKAVTLLPEDQLEALLDKLSGYAKPDERILLLARYHHLRPALLDKAATRWP 585 (684)
T ss_pred HHHHHHHHHHHHhCccccCCcccccCCCCCceEEEeCCHHHHHHHHHHHHhhcCCCcEEEEEechhhHHHHHHHHHhhcc
Confidence 211 000 000 111222222 234444434666666666532 2236676632 222332222222332
Q ss_pred CCCCcccEEEEcCcccccccCCccEEEEcccc
Q 015049 137 DASSEFDVLVASDAIGMGLNLNISRIIFSTMK 168 (414)
Q Consensus 137 ~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~ 168 (414)
..+|-+.|-=.+-|+. .++||+.+..
T Consensus 586 ----~~~i~~~T~h~sKGLE--fD~ViI~g~~ 611 (684)
T PRK11054 586 ----KLQIDFMTIHASKGQQ--ADYVIILGLQ 611 (684)
T ss_pred ----cCCeEEEehhhhcCCc--CCEEEEecCC
Confidence 3468899999999999 7788887765
No 192
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=67.03 E-value=12 Score=39.60 Aligned_cols=91 Identities=14% Similarity=0.330 Sum_probs=58.9
Q ss_pred EEE-EecHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-Cc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL-NI 159 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl-~i 159 (414)
++| +.||.-+.++.+.+...+ ..+++.++||.+...+...+ +.| .+|||||+ .+.+| +++ .+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~---~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG---VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC---CCEEEECccHHHHHHHcCCcchhhc
Confidence 555 559999999988887533 23689999999988766444 443 58999998 46666 666 48
Q ss_pred cEEEEccccccCCcccccCCHHHHHhhhcccCC
Q 015049 160 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 192 (414)
Q Consensus 160 ~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR 192 (414)
+.+|+-.....-.-+ -..++..+.+..-.
T Consensus 176 ~~lVlDEADrmLd~G----f~~~i~~I~~~~p~ 204 (513)
T COG0513 176 ETLVLDEADRMLDMG----FIDDIEKILKALPP 204 (513)
T ss_pred CEEEeccHhhhhcCC----CHHHHHHHHHhCCc
Confidence 888875433211100 34455555555543
No 193
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.97 E-value=79 Score=31.25 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=65.8
Q ss_pred EEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccccccccccCCCCEEEE---e-cHHHHHHHHHHHHHcCCC-
Q 015049 40 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT---F-SRHAIYRLKKAIESRGKH- 114 (414)
Q Consensus 40 i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~---f-sr~~~~~l~~~L~~~~~~- 114 (414)
+.+.-+.......+.++..+|..+.+....|...............+++..++|++ . |=.+....++.|.+.|..
T Consensus 168 vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~ 247 (320)
T PRK02269 168 VVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATE 247 (320)
T ss_pred EEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCE
Confidence 34444556677888899888877665444443211111111111233445556553 3 677788889999988754
Q ss_pred -eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 115 -LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 115 -~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.+++.||=++....++ +++. .++=+|+||++.
T Consensus 248 V~~~~tHglf~~~a~~~----l~~~--~i~~iv~Tdti~ 280 (320)
T PRK02269 248 VYASCTHPVLSGPALDN----IQKS--AIEKLVVLDTIY 280 (320)
T ss_pred EEEEEECcccCchHHHH----HHhC--CCCEEEEeCCCC
Confidence 3567799999764443 3444 688899999974
No 194
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=65.48 E-value=7.6 Score=42.49 Aligned_cols=78 Identities=23% Similarity=0.237 Sum_probs=58.1
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCc-ccEEEEcCcccccccC-CccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 119 VYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 119 ihg~L~~e~R~~~~~~F~~g~~~-~~VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
+-|..+.+.|++.+++|++..+- .-++++|-+-..|||+ ...++|+.+..- ++..=.|-+-|.-|+|+.
T Consensus 767 ldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~w---------npchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 767 LDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACW---------NPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred ccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeec---------CccccchhhhhhhhhcCc
Confidence 36889999999999999997432 2588899999999997 666666555443 555567778899999986
Q ss_pred CCceEEEEec
Q 015049 197 FPVGEVTCLD 206 (414)
Q Consensus 197 ~~~G~v~~~~ 206 (414)
..-+|+.+.
T Consensus 838 -KpcfvYRlV 846 (1387)
T KOG1016|consen 838 -KPCFVYRLV 846 (1387)
T ss_pred -CceeEEeeh
Confidence 345665543
No 195
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=65.44 E-value=7.8 Score=35.69 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=29.0
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChH
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 50 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~ 50 (414)
.++++||||++++- .|.-.. ++...+...+.++|++.-.+
T Consensus 62 ~~~~liiDE~~~~~---~g~l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLP---PGYLLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCC---hHHHHH-HHhhccCcceEEEECchhcc
Confidence 58999999999984 555544 44445567889999886543
No 196
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=64.87 E-value=94 Score=30.93 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=69.4
Q ss_pred cEEEEe-cCCChHHHHHHHHHcCCceEEeeccccCCCcccccccccccccCCCCEEEEe----cHHHHHHHHHHHHHcCC
Q 015049 39 ELHLCG-DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF----SRHAIYRLKKAIESRGK 113 (414)
Q Consensus 39 ~i~l~g-~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~f----sr~~~~~l~~~L~~~~~ 113 (414)
+..++| +.......+.++..+|..+.+....|...-. .........++..++|++= |=.+....++.|.+.|.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~--~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA 246 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNV--AESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKA 246 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcce--EeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcCC
Confidence 444444 4566777888888887766554444432111 1111112244455565532 67777788888988875
Q ss_pred Ce--EEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc
Q 015049 114 HL--CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 114 ~~--v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal 151 (414)
.. +++-||=++....+.+.+.++++ .++=+|+||++
T Consensus 247 ~~V~~~atHglf~~~a~~~l~~~~~~~--~i~~iv~Tnti 284 (332)
T PRK00553 247 KKVCVMATHGLFNKNAIQLFDEAFKKK--LIDKLFVSNSI 284 (332)
T ss_pred cEEEEEEEeeecCchHHHHHHhccccC--CCCEEEEeCCc
Confidence 43 45669999988777766666665 78999999997
No 197
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=63.78 E-value=5.6 Score=35.29 Aligned_cols=28 Identities=43% Similarity=0.814 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015049 336 PKTQAALRELESIHKVLDLYVWLSFRLE 363 (414)
Q Consensus 336 ~~~~~~l~~le~~~~~~~~y~wls~r~~ 363 (414)
|-....|..|=..=-.+|+|.||.||.-
T Consensus 122 Pld~ralraL~~Sp~AlDiY~WL~yR~~ 149 (161)
T PF04796_consen 122 PLDLRALRALKGSPLALDIYAWLTYRLH 149 (161)
T ss_pred CCCHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4445566666655567999999999984
No 198
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=61.29 E-value=30 Score=37.61 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=48.4
Q ss_pred CEEE-EecHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-C
Q 015049 91 DCIV-TFSRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL-N 158 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl-~ 158 (414)
.+|| +.||.-+.++++.+... ....+..+||+.+.+.+... .+. ..+|+|+|. .+.++ +++ .
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~~---~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LRQ---GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hcC---CCCEEEECHHHHHHHHHcCCcchhh
Confidence 4555 55999999988877653 12378889999887754443 344 468999994 44444 566 5
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 150 l~~lVlDEAd 159 (629)
T PRK11634 150 LSGLVLDEAD 159 (629)
T ss_pred ceEEEeccHH
Confidence 8888875433
No 199
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=57.07 E-value=1.3e+02 Score=30.58 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=46.9
Q ss_pred CEEEEe-cHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cc-ccccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESR---GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IG-MGLNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~---~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~-~Glnl-~i 159 (414)
.++++. |+.-+.++.+.+... ...++..++|+.+...+..+ +.+ ..+|||+|.- +. ..+++ .+
T Consensus 75 ~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~---~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 75 RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---FSE---NQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred eEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---hcC---CCCEEEEChHHHHHHHHcCCcCcccC
Confidence 445544 999888877766542 23488999999998765443 333 4689999972 11 23455 47
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 149 ~~lViDEah 157 (434)
T PRK11192 149 ETLILDEAD 157 (434)
T ss_pred CEEEEECHH
Confidence 888876544
No 200
>PF13173 AAA_14: AAA domain
Probab=56.89 E-value=13 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=24.4
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCCh
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 49 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~ 49 (414)
.-.+++|||+|.+. ++...+...+-.-+.-.+.++|++...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccchHH
Confidence 45789999999995 344333333332233456666766543
No 201
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=55.55 E-value=40 Score=36.56 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=59.4
Q ss_pred EEEEec----HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-ccccC-CccEEEEc
Q 015049 92 CIVTFS----RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL-NISRIIFS 165 (414)
Q Consensus 92 ~Iv~fs----r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-~Glnl-~i~~VI~~ 165 (414)
++.+.| +.+...+.+.|...|. .++.+-|++....|.++.+...+| +++++|.|=|+- -.+++ +...||+-
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i-~V~lLtG~~kgk~r~~~l~~l~~G--~~~ivVGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGI-RVALLTGSLKGKARKEILEQLASG--EIDIVVGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCC-eEEEeecccchhHHHHHHHHHhCC--CCCEEEEcchhhhcceeecceeEEEEe
Confidence 344556 4555566666776776 899999999999999999999998 999999999754 46777 57788876
Q ss_pred ccccc
Q 015049 166 TMKKF 170 (414)
Q Consensus 166 ~~~k~ 170 (414)
.-.+|
T Consensus 392 EQHRF 396 (677)
T COG1200 392 EQHRF 396 (677)
T ss_pred ccccc
Confidence 65554
No 202
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.59 E-value=29 Score=33.18 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=53.2
Q ss_pred EecHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC----cccc--cccC-CccEEE
Q 015049 95 TFSRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD----AIGM--GLNL-NISRII 163 (414)
Q Consensus 95 ~fsr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd----al~~--Glnl-~i~~VI 163 (414)
|.||.-++++.+..+... ..++++.+||++-..-.+.++. . -.|+|+|. |+.+ .+|+ ++++-|
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~--~----PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN--C----PHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC--C----CeEEEcCcHHHHHHHHhccCchhhcceee
Confidence 559999999988877632 2389999999997765555544 3 36999998 3333 3555 355555
Q ss_pred EccccccCCcccccCCHHHHHhhhcccC
Q 015049 164 FSTMKKFDGVELRDLTVPEVKQIAGRAG 191 (414)
Q Consensus 164 ~~~~~k~dg~~~~~ls~~~~~QraGRAG 191 (414)
.-...|. ...++...=.|-+=|+-
T Consensus 191 lDEcdkm----le~lDMrRDvQEifr~t 214 (387)
T KOG0329|consen 191 LDECDKM----LEQLDMRRDVQEIFRMT 214 (387)
T ss_pred hhhHHHH----HHHHHHHHHHHHHhhcC
Confidence 5443321 11223333455555553
No 203
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=54.04 E-value=68 Score=34.98 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=67.1
Q ss_pred ccccCCCCEEEEe-cHHHHHHHHHHHHHcCCC-----eEEEecCCCCHHHHHHHHHHhh----CCCCcccEEEEcCcccc
Q 015049 84 FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKH-----LCSIVYGSLPPETRTRQATRFN----DASSEFDVLVASDAIGM 153 (414)
Q Consensus 84 l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~-----~v~~ihg~L~~e~R~~~~~~F~----~g~~~~~VLVaTdal~~ 153 (414)
+..+-+|.+|+|| |-.-...+.+..++.|+. +-.+.+-.... -..+++.|. .|.|.+=.=|.=-=+..
T Consensus 624 L~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSE 701 (821)
T KOG1133|consen 624 LSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSE 701 (821)
T ss_pred HHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEecccccc
Confidence 3333456666666 887777777777765421 12234443333 234444443 33223323333446788
Q ss_pred cccCC---ccEEEEccccccCC--------------cccc---------cCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 154 GLNLN---ISRIIFSTMKKFDG--------------VELR---------DLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 154 Glnl~---i~~VI~~~~~k~dg--------------~~~~---------~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
|||+. .+.||+.++|..+. +-.. .+=....-|-+|||=|-..+| ..|+.++
T Consensus 702 GINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DY--A~i~LlD 778 (821)
T KOG1133|consen 702 GINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDY--ASIYLLD 778 (821)
T ss_pred ccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccc--eeEEEeh
Confidence 99993 88899999886421 1111 122345678889998887663 4455553
No 204
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=53.99 E-value=4.5 Score=47.80 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEe-cHHHHHHHHHHHHHcCCCeEEEecCC---CCHH--------HHHHHHHHhhCCCCcccEEEEcCcccccccCC-c
Q 015049 93 IVTF-SRHAIYRLKKAIESRGKHLCSIVYGS---LPPE--------TRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 159 (414)
Q Consensus 93 Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~---L~~e--------~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i 159 (414)
|++. -+..+....+.+...+...+..+-|. .-.+ .+.++.+.|... ++++|++|.++..|+|++ +
T Consensus 296 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~--~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 296 IIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH--ELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred eeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh--hhhHHHHHHHHHhhcchhhh
Confidence 4433 56666666666665433233223222 2111 245778899987 999999999999999996 7
Q ss_pred cEEEEccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 160 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 160 ~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
.-|+....+- ...+|+|..||+-+.+.
T Consensus 374 ~~~~~~~~~~---------~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 374 NLVVLFDAPT---------YYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhheeccCcc---------hHHHHHHhhcccccchh
Confidence 7787777665 88999999999977664
No 205
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=53.35 E-value=52 Score=35.55 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc------cccC-Ccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM------GLNL-NIS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~------Glnl-~i~ 160 (414)
.|.+||+. ++.-+.+....+...|. .+.+++++.+.+++..+.+..+.| +++++++|+---. .+.. ++.
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi-~~~~~~s~~~~~~~~~~~~~~~~g--~~~il~~tPe~l~~~~~~~~l~~~~l~ 141 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGV-AAACLNSTQTREQQLEVMAGCRTG--QIKLLYIAPERLMMDNFLEHLAHWNPA 141 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCC-cEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEChHHhcChHHHHHHhhCCCC
Confidence 34455544 88888888888888887 788999999999999999989887 8899999853211 1221 467
Q ss_pred EEEEcccc
Q 015049 161 RIIFSTMK 168 (414)
Q Consensus 161 ~VI~~~~~ 168 (414)
.||+-...
T Consensus 142 ~iVIDEaH 149 (607)
T PRK11057 142 LLAVDEAH 149 (607)
T ss_pred EEEEeCcc
Confidence 77764433
No 206
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.06 E-value=40 Score=34.24 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=46.9
Q ss_pred EEEecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-------cccccC-CccE
Q 015049 93 IVTFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-------GMGLNL-NISR 161 (414)
Q Consensus 93 Iv~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-------~~Glnl-~i~~ 161 (414)
|++.||.-+.++++..+..| ..+|+++-||+... .+....++.+ .|||||.-. -.|+++ .+++
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~--~q~~~L~kkP----hilVaTPGrL~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM--LQANQLSKKP----HILVATPGRLWDHLENTKGFSLEQLKF 207 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH--HHHHHhhcCC----CEEEeCcHHHHHHHHhccCccHHHhHH
Confidence 33559999999999998764 23899999999854 3444455554 689999742 356666 4666
Q ss_pred EEEc
Q 015049 162 IIFS 165 (414)
Q Consensus 162 VI~~ 165 (414)
.|.-
T Consensus 208 LVlD 211 (476)
T KOG0330|consen 208 LVLD 211 (476)
T ss_pred Hhhc
Confidence 6543
No 207
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=53.03 E-value=20 Score=37.41 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHh--CCCCCcEEEEecCC----ChHHHHHHHHHcCCc-eEEee
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALL--GICANELHLCGDPA----AVPLIQQILQVTGDD-VKVQS 67 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~--~l~a~~i~l~g~~~----~~~~i~~l~~~~~~~-~~v~~ 67 (414)
.++.++|+||||.-.- ++++..+.. -..++..+++|.++ ..+.++..+..+|.+ +++..
T Consensus 130 ~dv~~lifDEAHRAvG---nyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 130 DDVSLLIFDEAHRAVG---NYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred HHceEEEechhhhccC---cchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEec
Confidence 5689999999998641 234443321 12345556666543 345677888777765 44443
No 208
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.41 E-value=35 Score=35.99 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=61.2
Q ss_pred EEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc--cccccC-CccEEEEccccc
Q 015049 93 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRIIFSTMKK 169 (414)
Q Consensus 93 Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal--~~Glnl-~i~~VI~~~~~k 169 (414)
|+..|--+--++...+.+.+. ....+|---+...-.+.-+.|-.| +..||+-|.=+ =+--++ .|++||||.+|.
T Consensus 557 iyIPSYfDFVRvRNy~K~e~i-~F~~i~EYssk~~vsRAR~lF~qg--r~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 557 IYIPSYFDFVRVRNYMKKEEI-SFVMINEYSSKSKVSRARELFFQG--RKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred EEecchhhHHHHHHHhhhhhc-chHHHhhhhhHhhhhHHHHHHHhc--CceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 334476666667777766554 333333222333333445678887 88999999753 234556 599999999997
Q ss_pred cCCcccccCCHHHHHhhhcccCCCCC
Q 015049 170 FDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 170 ~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
+ |.-.++++.+.||+---|.
T Consensus 634 ~------P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 634 N------PHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred C------cHHHHHHHhhhhhhhccCC
Confidence 3 5567899999998865553
No 209
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.21 E-value=25 Score=36.92 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhC--CCCCcEEEEecCC
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICANELHLCGDPA 47 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~--l~a~~i~l~g~~~ 47 (414)
.|+..+++++||||+|++.. .++...+.. -+...+.++..++
T Consensus 111 ~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 111 LPISSKFKVYIIDEVHMLSN----SAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ccccCCceEEEEeChHhCCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 35667899999999999973 233333322 2344555555443
No 210
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.02 E-value=49 Score=34.79 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred EEecHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----ccc-cccC-CccEE
Q 015049 94 VTFSRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGM-GLNL-NISRI 162 (414)
Q Consensus 94 v~fsr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~-Glnl-~i~~V 162 (414)
++.||..+.++...-.+. +. .+.++|||.|..++ .+..+. +..++|||.- +-| |+|+ .+.+.
T Consensus 302 lvPTrela~Qi~~eaKkf~K~ygl-~~v~~ygGgsk~eQ---~k~Lk~---g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAYGL-RVVAVYGGGSKWEQ---SKELKE---GAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhccc-eEEEeecCCcHHHH---HHhhhc---CCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 344999888765544333 34 77788999997754 444555 4579999972 222 4676 47766
Q ss_pred EEcccc-ccCC
Q 015049 163 IFSTMK-KFDG 172 (414)
Q Consensus 163 I~~~~~-k~dg 172 (414)
|+-... -||+
T Consensus 375 V~DEadrmfdm 385 (731)
T KOG0339|consen 375 VLDEADRMFDM 385 (731)
T ss_pred EEechhhhhcc
Confidence 665432 3453
No 211
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=49.40 E-value=2.5e+02 Score=27.74 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred EEEEecCCChHHHHHHHHHcC-CceEEeeccccCCCcccccccccccccCCCCEEEEe----cHHHHHHHHHHHHHcCCC
Q 015049 40 LHLCGDPAAVPLIQQILQVTG-DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF----SRHAIYRLKKAIESRGKH 114 (414)
Q Consensus 40 i~l~g~~~~~~~i~~l~~~~~-~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~f----sr~~~~~l~~~L~~~~~~ 114 (414)
+.+.-+.......+.++..++ .++.+-...|...-.. .......+++..++|++= |=.+....++.|.+.|..
T Consensus 169 vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~--~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~ 246 (319)
T PRK04923 169 IVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVA--TVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGAL 246 (319)
T ss_pred EEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCce--EEEecccCCCCCEEEEEecccCchHHHHHHHHHHHHCCCC
Confidence 444445566778888888886 4665555545332111 111122345555666632 666777888899888754
Q ss_pred e--EEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 115 L--CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 115 ~--v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
+ +.+-||=++.... +++++. .++=+|+||++.
T Consensus 247 ~V~~~~THgvfs~~a~----~~l~~s--~i~~iv~Tdtip 280 (319)
T PRK04923 247 KVVAYITHPVLSGPAV----DNINNS--QLDELVVTDTIP 280 (319)
T ss_pred EEEEEEECcccCchHH----HHHhhC--CCCEEEEeCCcc
Confidence 4 4566999997543 344444 688999999974
No 212
>PRK09401 reverse gyrase; Reviewed
Probab=49.19 E-value=45 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=52.4
Q ss_pred CCCEEE-EecHHHHHHHHHHHHHcCC---CeEEEe--cCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----cccccccC
Q 015049 89 TGDCIV-TFSRHAIYRLKKAIESRGK---HLCSIV--YGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMGLNL 157 (414)
Q Consensus 89 ~g~~Iv-~fsr~~~~~l~~~L~~~~~---~~v~~i--hg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~Glnl 157 (414)
.+.++| +.||.-+.++.+.+...+. ..+.++ ||+++.+++..+.+.+..| ..+|+|+|. -+. .+..
T Consensus 123 g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~--~~~IlV~Tp~rL~~~~~-~l~~ 199 (1176)
T PRK09401 123 GKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG--DFDILVTTSQFLSKNFD-ELPK 199 (1176)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC--CCCEEEECHHHHHHHHH-hccc
Confidence 344555 4499999999888876542 133333 5667788888888999887 789999996 222 2333
Q ss_pred -CccEEEEcccc
Q 015049 158 -NISRIIFSTMK 168 (414)
Q Consensus 158 -~i~~VI~~~~~ 168 (414)
.++.+|+-...
T Consensus 200 ~~~~~lVvDEaD 211 (1176)
T PRK09401 200 KKFDFVFVDDVD 211 (1176)
T ss_pred cccCEEEEEChH
Confidence 37777765543
No 213
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=48.87 E-value=25 Score=39.43 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.5
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+...+++++||||+|+|.
T Consensus 116 p~~~~~KV~IIDEad~lt 133 (824)
T PRK07764 116 PAESRYKIFIIDEAHMVT 133 (824)
T ss_pred hhcCCceEEEEechhhcC
Confidence 445788999999999997
No 214
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=48.53 E-value=47 Score=36.24 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=43.5
Q ss_pred EEEEecHHHHHHHHHHHH----HcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEE
Q 015049 92 CIVTFSRHAIYRLKKAIE----SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 164 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~----~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~ 164 (414)
.|++.|+.-+.+.++.+. ..|. .|++++|+++++.|.... ..+|+++|+. +.|.|.=-++.+.
T Consensus 148 ~VvTptreLA~qdae~~~~l~~~lGl-sv~~i~gg~~~~~r~~~y--------~~dIvygT~~-e~~FDyLrd~~~~ 214 (656)
T PRK12898 148 HVITVNDYLAERDAELMRPLYEALGL-TVGCVVEDQSPDERRAAY--------GADITYCTNK-ELVFDYLRDRLAL 214 (656)
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCC-EEEEEeCCCCHHHHHHHc--------CCCEEEECCC-chhhhhccccccc
Confidence 344668777766655554 3565 899999999988666542 4589999997 7788864444443
No 215
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=48.49 E-value=17 Score=41.43 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=13.4
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
..++++||||||.+.
T Consensus 271 ~~wdlvIvDEAH~lk 285 (956)
T PRK04914 271 AEWDLLVVDEAHHLV 285 (956)
T ss_pred cCCCEEEEechhhhc
Confidence 478999999999995
No 216
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=48.38 E-value=66 Score=37.37 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=45.8
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.|.+||+. ++.-+..-...|...++ .++.+.|+++..++..+++.+....+++++|++|.-
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI-~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANI-PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCC-eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 34455544 77777655555666777 888999999999999999988762238999999984
No 217
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=48.03 E-value=9.6 Score=38.04 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.5
Q ss_pred cCCCcCEEEEecccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d 21 (414)
....+|++||||||.+.+
T Consensus 80 ~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCcCCEEEEehhHhhhh
Confidence 346899999999999975
No 218
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=47.82 E-value=22 Score=39.17 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=30.9
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCC-cEEEEecCCChH
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVP 50 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~-~i~l~g~~~~~~ 50 (414)
.+++++|.||.||+- .++..--.-|+.++|. ++.++|++---.
T Consensus 523 ~~~n~viyDEgHmLK--N~~SeRy~~LM~I~An~RlLLTGTPLQNN 566 (941)
T KOG0389|consen 523 QKFNYVIYDEGHMLK--NRTSERYKHLMSINANFRLLLTGTPLQNN 566 (941)
T ss_pred ccccEEEecchhhhh--ccchHHHHHhccccccceEEeeCCccccc
Confidence 578999999999996 4555555567778764 566777764433
No 219
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=47.66 E-value=79 Score=28.15 Aligned_cols=73 Identities=14% Similarity=0.371 Sum_probs=46.4
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cccc-ccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMG-LNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~G-lnl-~i 159 (414)
.+|++. ++.-+.+..+.++... ...+..++|+.+...+... +. + ..+|+|+|.- +..+ .++ .+
T Consensus 71 ~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 71 QALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LK-R--GPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hc-C--CCCEEEEChHHHHHHHHcCCCChhhC
Confidence 445544 8988888877776542 2367888999987665433 33 3 5689999952 3333 344 37
Q ss_pred cEEEEccccc
Q 015049 160 SRIIFSTMKK 169 (414)
Q Consensus 160 ~~VI~~~~~k 169 (414)
+.+|+-....
T Consensus 145 ~~lIvDE~h~ 154 (203)
T cd00268 145 KYLVLDEADR 154 (203)
T ss_pred CEEEEeChHH
Confidence 7777655443
No 220
>PTZ00110 helicase; Provisional
Probab=46.80 E-value=60 Score=34.57 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=47.6
Q ss_pred EEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-Ccc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL-NIS 160 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl-~i~ 160 (414)
+|| +.||.-+.++.+.+.+.+ ..++.++||+.+..... ...+. ..+|||+|. .+..+ +++ .++
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~---~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRR---GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHc---CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 444 449999998888777643 23678889998865433 33444 468999995 45555 445 488
Q ss_pred EEEEcccc
Q 015049 161 RIIFSTMK 168 (414)
Q Consensus 161 ~VI~~~~~ 168 (414)
.||+-...
T Consensus 280 ~lViDEAd 287 (545)
T PTZ00110 280 YLVLDEAD 287 (545)
T ss_pred EEEeehHH
Confidence 88875544
No 221
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.35 E-value=23 Score=37.41 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.3
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+...+++++||||+|++.
T Consensus 115 p~~~~~kV~iIDE~~~ls 132 (509)
T PRK14958 115 PTKGRFKVYLIDEVHMLS 132 (509)
T ss_pred cccCCcEEEEEEChHhcC
Confidence 445678999999999997
No 222
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=45.85 E-value=24 Score=40.45 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=26.2
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCC-CcEEEEecCCC
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 48 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-~~i~l~g~~~~ 48 (414)
++++|||||+|.+-. .......++..+.+ ..+.++|++..
T Consensus 291 ~W~~VIvDEAHrIKN--~~Sklskalr~L~a~~RLLLTGTPlq 331 (1033)
T PLN03142 291 SWRYIIIDEAHRIKN--ENSLLSKTMRLFSTNYRLLITGTPLQ 331 (1033)
T ss_pred CCCEEEEcCccccCC--HHHHHHHHHHHhhcCcEEEEecCCCC
Confidence 578999999999963 33445566666654 34556666543
No 223
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=45.76 E-value=54 Score=37.59 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC-CCceEEEEec
Q 015049 128 RTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLD 206 (414)
Q Consensus 128 R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~-~~~G~v~~~~ 206 (414)
+.....+|..++..+++||.+|.+-.|.|-|+=..+..+- ||---..+|-+-|+-|.-.+ .+.|.|+.+.
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 3444555544446899999999999999999666655542 34555678888888886554 3679999886
Q ss_pred CCCHHHHHHhhC
Q 015049 207 SEDLPLLHKSLL 218 (414)
Q Consensus 207 ~~d~~~l~~~l~ 218 (414)
. -...+++++.
T Consensus 651 g-l~e~l~~Al~ 661 (962)
T COG0610 651 G-LKEALKKALK 661 (962)
T ss_pred c-hHHHHHHHHH
Confidence 5 4445555554
No 224
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=45.68 E-value=26 Score=31.88 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=24.9
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCC--CcEEEEecCCChH
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVP 50 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a--~~i~l~g~~~~~~ 50 (414)
..+.+++||||+-|+... .+..++..++. ..+.++|+..-.+
T Consensus 91 ~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPNQLP 134 (196)
T ss_dssp -TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred CCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcchhc
Confidence 456789999999999722 33444443433 4688899887554
No 225
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=45.67 E-value=18 Score=39.95 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.9
Q ss_pred cCCCcCEEEEecccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d 21 (414)
...+++++||||+|+|..
T Consensus 116 ~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 116 VDARFKVYMIDEVHMLTN 133 (830)
T ss_pred ccCCceEEEEeChhhCCH
Confidence 345789999999999973
No 226
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=44.86 E-value=11 Score=40.99 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.0
Q ss_pred CcCCCcCEEEEecccccCC
Q 015049 3 DVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d 21 (414)
+++..++++||||||.+.|
T Consensus 202 ~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 202 GLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred CCCCCCCEEEEeCCcchHH
Confidence 4567799999999999964
No 227
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.80 E-value=24 Score=38.41 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=24.4
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 48 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~~ 48 (414)
...+++++||||+|+|.. .+++.+|.-| +...+.++..++.
T Consensus 121 ~~gr~KViIIDEah~Ls~----~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 121 TAGRFKVYMIDEVHMLTN----HAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred hcCCceEEEEEChHhcCH----HHHHHHHHhhccCCCCceEEEEeCC
Confidence 345789999999999973 2344444333 3344444444443
No 228
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.51 E-value=34 Score=37.10 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.3
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+...+++++||||+|+++
T Consensus 120 p~~g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 120 PVQGRFKVFMIDEVHMLT 137 (618)
T ss_pred cccCCceEEEEEChhhCC
Confidence 445679999999999997
No 229
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=42.40 E-value=3.4e+02 Score=26.55 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=65.3
Q ss_pred cEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccccccccccCCCCEEEE---e-cHHHHHHHHHHHHHcCCC
Q 015049 39 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT---F-SRHAIYRLKKAIESRGKH 114 (414)
Q Consensus 39 ~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~---f-sr~~~~~l~~~L~~~~~~ 114 (414)
.+.+.-+.......+.++..++..+.+....|..+-...... ..-..++..++|++ . |=.+....++.|++.|..
T Consensus 162 ~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~-~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~ 240 (301)
T PRK07199 162 PLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISL-PDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAA 240 (301)
T ss_pred cEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEe-ccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCc
Confidence 344455556667788888888877655544454321111000 00123444556553 2 667777888999988854
Q ss_pred --eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 115 --LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 115 --~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.+.+.||=++... .+++++. .++=+|+||++.
T Consensus 241 ~V~~~~tHgvfs~~a----~~~l~~~--~i~~iv~Tdti~ 274 (301)
T PRK07199 241 SPDCVVVHALFAGDA----YSALAAA--GIARVVSTDTVP 274 (301)
T ss_pred EEEEEEEeeeCChHH----HHHHHhC--CCCEEEEeCCcc
Confidence 3566799888653 4445444 688999999975
No 230
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.32 E-value=1e+02 Score=31.83 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=46.8
Q ss_pred EEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc------ccccccC-Ccc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA------IGMGLNL-NIS 160 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda------l~~Glnl-~i~ 160 (414)
+|| +.||.-+.++.+.+.... ...+..++|+.+.+... ..++. ..+|+|||.- ....+++ .++
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~---~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM---MKLRG---GVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHH---HHHcC---CCcEEEEChHHHHHHHHcCCcccccce
Confidence 455 459999998888776532 23677889999876543 23333 6789999962 2234566 488
Q ss_pred EEEEcccc
Q 015049 161 RIIFSTMK 168 (414)
Q Consensus 161 ~VI~~~~~ 168 (414)
.||+-...
T Consensus 152 ~lViDEah 159 (456)
T PRK10590 152 ILVLDEAD 159 (456)
T ss_pred EEEeecHH
Confidence 88875544
No 231
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.14 E-value=31 Score=37.06 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.8
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+...+++++||||+|++.
T Consensus 115 p~~~~~KVvIIdev~~Lt 132 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLS 132 (576)
T ss_pred cccCCceEEEEEChhhCC
Confidence 556789999999999997
No 232
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.76 E-value=50 Score=35.53 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.3
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+....++++||||+|++.
T Consensus 114 P~~~~~KVvIIDEah~Lt 131 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMVT 131 (584)
T ss_pred hhcCCceEEEEECCCcCC
Confidence 445678999999999997
No 233
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=41.61 E-value=27 Score=37.37 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.7
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
|....++++||||+|++.
T Consensus 115 p~~~~~kViIIDE~~~Lt 132 (559)
T PRK05563 115 PSEAKYKVYIIDEVHMLS 132 (559)
T ss_pred cccCCeEEEEEECcccCC
Confidence 556779999999999997
No 234
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=40.64 E-value=80 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 106 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 106 ~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
+.|+..|+ .++.++++|+.++|..++..+..| .+++|.-++-
T Consensus 75 ~~l~~~Gi-~A~~lnS~l~~~e~~~v~~~l~~g--~~klLyisPE 116 (590)
T COG0514 75 DQLEAAGI-RAAYLNSTLSREERQQVLNQLKSG--QLKLLYISPE 116 (590)
T ss_pred HHHHHcCc-eeehhhcccCHHHHHHHHHHHhcC--ceeEEEECch
Confidence 45566886 999999999999999999999998 9999987764
No 235
>PRK04296 thymidine kinase; Provisional
Probab=40.48 E-value=17 Score=32.91 Aligned_cols=15 Identities=47% Similarity=0.844 Sum_probs=12.9
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
.++++|||||+|.+.
T Consensus 77 ~~~dvviIDEaq~l~ 91 (190)
T PRK04296 77 EKIDCVLIDEAQFLD 91 (190)
T ss_pred CCCCEEEEEccccCC
Confidence 378999999999875
No 236
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=40.22 E-value=11 Score=36.51 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=12.2
Q ss_pred CcCEEEEecccccC
Q 015049 7 DYDCAVIDEIQMLG 20 (414)
Q Consensus 7 ~v~~vVIDE~h~i~ 20 (414)
...++||||||.+.
T Consensus 236 ~~~~lIiDEAHnL~ 249 (289)
T smart00489 236 KDSIVIFDEAHNLD 249 (289)
T ss_pred cccEEEEeCccChH
Confidence 45799999999996
No 237
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=40.22 E-value=11 Score=36.51 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=12.2
Q ss_pred CcCEEEEecccccC
Q 015049 7 DYDCAVIDEIQMLG 20 (414)
Q Consensus 7 ~v~~vVIDE~h~i~ 20 (414)
...++||||||.+.
T Consensus 236 ~~~~lIiDEAHnL~ 249 (289)
T smart00488 236 KDSIVIFDEAHNLD 249 (289)
T ss_pred cccEEEEeCccChH
Confidence 45799999999996
No 238
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.70 E-value=28 Score=36.42 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=24.6
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 48 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~~ 48 (414)
....+.++||||||++.. .++...+.-+ +...+.++..++.
T Consensus 118 ~~g~~KV~IIDEah~Ls~----~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 118 MGGKYKVYIIDEVHMLTD----QSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred hcCCCEEEEEechhhcCH----HHHHHHHHHhhcCCCceEEEeecCC
Confidence 345688999999999973 2344443333 3345555554443
No 239
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=38.56 E-value=1.4e+02 Score=25.39 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=46.8
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCC---CeEEEecCCCCHH-HHHHHHHHhhCCCCcccEEEEcCc-----cc-ccccC-C
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGK---HLCSIVYGSLPPE-TRTRQATRFNDASSEFDVLVASDA-----IG-MGLNL-N 158 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~---~~v~~ihg~L~~e-~R~~~~~~F~~g~~~~~VLVaTda-----l~-~Glnl-~ 158 (414)
.+++.. ++.-+.+..+.+..... ..+..+||+.+.. ...... .+ +.+|+|+|.. +. ..+++ .
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~ilv~T~~~l~~~~~~~~~~~~~ 119 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SN--QADILVTTPEQLLDLISNGKINISR 119 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HT--TSSEEEEEHHHHHHHHHTTSSTGTT
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccccccccc----cc--cccccccCcchhhcccccccccccc
Confidence 455544 99999999888877553 2678889999855 222222 32 5689999973 11 12344 4
Q ss_pred ccEEEEccccc
Q 015049 159 ISRIIFSTMKK 169 (414)
Q Consensus 159 i~~VI~~~~~k 169 (414)
++.||+-....
T Consensus 120 ~~~iViDE~h~ 130 (169)
T PF00270_consen 120 LSLIVIDEAHH 130 (169)
T ss_dssp ESEEEEETHHH
T ss_pred ceeeccCcccc
Confidence 77888755544
No 240
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.45 E-value=55 Score=34.62 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.6
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
++..+++++||||+|++.
T Consensus 124 P~~~~~KVvIIDEa~~Ls 141 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLS 141 (507)
T ss_pred cccCCcEEEEEEChhhcC
Confidence 556788999999999997
No 241
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=37.74 E-value=41 Score=36.67 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=17.7
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHH
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRAL 32 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l 32 (414)
+.++++||||||.+.+. +|..++
T Consensus 351 qtfDLLIVDEAqFIk~~----al~~il 373 (738)
T PHA03368 351 QDFNLLFVDEANFIRPD----AVQTIM 373 (738)
T ss_pred CcccEEEEechhhCCHH----HHHHHH
Confidence 57999999999999753 455444
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=37.55 E-value=24 Score=28.99 Aligned_cols=12 Identities=42% Similarity=0.216 Sum_probs=10.5
Q ss_pred CEEEEecccccC
Q 015049 9 DCAVIDEIQMLG 20 (414)
Q Consensus 9 ~~vVIDE~h~i~ 20 (414)
.++||||+|.+.
T Consensus 89 ~~lviDe~~~l~ 100 (131)
T PF13401_consen 89 VLLVIDEADHLF 100 (131)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEeChHhcC
Confidence 589999999984
No 243
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.17 E-value=46 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.5
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
|+.....++||||+|++.
T Consensus 115 P~~~~~KVvIIDEad~Lt 132 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLT 132 (486)
T ss_pred cccCCeeEEEEEChhhcC
Confidence 556778999999999996
No 244
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=36.45 E-value=31 Score=38.13 Aligned_cols=66 Identities=24% Similarity=0.223 Sum_probs=47.7
Q ss_pred HHHhhCCCCcccEEEEcCcccccccCC-ccEEE------EccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE
Q 015049 132 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRII------FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204 (414)
Q Consensus 132 ~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI------~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~ 204 (414)
-++|-+| +-.|-|-+.++.-||.+. -++|+ +.++. -|+|....+|..||+-|..+-...-+|+.
T Consensus 850 KqrFM~G--eK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLE-------LPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDG--EKLVAIISEAASSGISLQSDRRVQNQRRRVHITLE-------LPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred Hhhhccc--cceeeeeehhhccCceeecchhhhhhhheEEEEEE-------CCcchhHHHHHhcccccccccCCCeEEEE
Confidence 4689998 667888899999999984 44443 22222 36699999999999999987533456655
Q ss_pred ec
Q 015049 205 LD 206 (414)
Q Consensus 205 ~~ 206 (414)
+.
T Consensus 921 Is 922 (1300)
T KOG1513|consen 921 IS 922 (1300)
T ss_pred eh
Confidence 53
No 245
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.39 E-value=1.2e+02 Score=32.64 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=47.6
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----cccc--cccC-C
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGM--GLNL-N 158 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~--Glnl-~ 158 (414)
.+||+. ||.-+.++.+.+.+.+ ...+..+||+.+.+.+.... ++ ..+|||+|. .+.. .+++ .
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l---~~---~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL---QQ---GVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH---hC---CCCEEEECHHHHHHHHHhccccchhh
Confidence 455544 9999998888776543 22688999999887654433 33 568999995 3322 2455 4
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 160 v~~lViDEAh 169 (572)
T PRK04537 160 CEICVLDEAD 169 (572)
T ss_pred eeeeEecCHH
Confidence 7777775544
No 246
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.38 E-value=69 Score=32.21 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 97 SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 97 sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
||.-+.++++++...| ..+|++++|+++.-..... ..+ +-.++|||.
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~---L~~---rPHvVvatP 133 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI---LSD---RPHVVVATP 133 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh---ccc---CCCeEecCc
Confidence 8999999999998655 3489999999875543332 222 347999997
No 247
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.40 E-value=50 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.8
Q ss_pred cCCCcCEEEEecccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d 21 (414)
....++++||||+|++..
T Consensus 115 ~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 115 TQGRFKVYLIDEVHMLST 132 (702)
T ss_pred hcCCcEEEEEechHhcCH
Confidence 345789999999999973
No 248
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=33.53 E-value=43 Score=37.05 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=26.6
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCC-CcEEEEecCCChH
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVP 50 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-~~i~l~g~~~~~~ 50 (414)
..+++||||++|+.. +.+..++..++. .++.++|+..-.+
T Consensus 416 ~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 416 DCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred cCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcccccc
Confidence 578999999999962 233444555543 4678888765443
No 249
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=33.22 E-value=19 Score=39.61 Aligned_cols=15 Identities=27% Similarity=0.062 Sum_probs=12.9
Q ss_pred CcCEEEEecccccCC
Q 015049 7 DYDCAVIDEIQMLGC 21 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d 21 (414)
.++++||||||.+.|
T Consensus 246 ~~~~lViDEAH~L~d 260 (697)
T PRK11747 246 ENLLYVLDEGHHLPD 260 (697)
T ss_pred CCCEEEEECccchHH
Confidence 378899999999965
No 250
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=31.95 E-value=21 Score=40.68 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.4
Q ss_pred cCCCcCEEEEecccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d 21 (414)
++..++++||||||.+.|
T Consensus 452 ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 452 LLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred cCCCCCeEEEECCchHHH
Confidence 567789999999999964
No 251
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=31.91 E-value=31 Score=30.94 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=12.8
Q ss_pred CcCEEEEecccccC
Q 015049 7 DYDCAVIDEIQMLG 20 (414)
Q Consensus 7 ~v~~vVIDE~h~i~ 20 (414)
++++|.|||+|.+.
T Consensus 76 ~~dvI~IDEaQFf~ 89 (176)
T PF00265_consen 76 DYDVIGIDEAQFFD 89 (176)
T ss_dssp TCSEEEESSGGGST
T ss_pred CCCEEEEechHhhH
Confidence 49999999999986
No 252
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=31.56 E-value=67 Score=31.13 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.9
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
...+++||||+|.+.
T Consensus 99 ~~~~vliiDe~d~l~ 113 (316)
T PHA02544 99 GGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEEECccccc
Confidence 467899999999884
No 253
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.37 E-value=1.4e+02 Score=31.66 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred EEE-EecHHHHH---HHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-------ccccccC-Cc
Q 015049 92 CIV-TFSRHAIY---RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-------IGMGLNL-NI 159 (414)
Q Consensus 92 ~Iv-~fsr~~~~---~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-------l~~Glnl-~i 159 (414)
++| +.||.-+. .+.++|.+.....|+..-|||+-..++.++ +. .-+|+|||+- =.+|+|+ +|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~L---Rs---~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVL---RS---RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHH---hh---CCCEEEecchhHHHHhccCCCccccce
Confidence 444 55997655 456666666555899999999977555544 44 4589999983 2455665 35
Q ss_pred cEEEE
Q 015049 160 SRIIF 164 (414)
Q Consensus 160 ~~VI~ 164 (414)
...|.
T Consensus 329 EVLvl 333 (691)
T KOG0338|consen 329 EVLVL 333 (691)
T ss_pred eEEEe
Confidence 44444
No 254
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=31.22 E-value=38 Score=37.19 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHH---HhCCCCCcEEEEecCCCh
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRA---LLGICANELHLCGDPAAV 49 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~---l~~l~a~~i~l~g~~~~~ 49 (414)
++.+.++||||||.-..+ +.++.+ ++.+....-.++|.+++.
T Consensus 177 ls~fs~iv~DE~Hra~kn---~~Y~~Vmr~~l~~k~~~~qILgLTASp 221 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKN---HPYNNIMREYLDLKNQGNQILGLTASP 221 (746)
T ss_pred cceEEEEEEccccccccc---ccHHHHHHHHHHhhhccccEEEEecCC
Confidence 567899999999988632 333333 333332222555555444
No 255
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.65 E-value=1.7e+02 Score=29.77 Aligned_cols=72 Identities=13% Similarity=0.258 Sum_probs=46.7
Q ss_pred CEEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----ccc-cccC-Cc
Q 015049 91 DCIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGM-GLNL-NI 159 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~-Glnl-~i 159 (414)
.+|| +.||.-+.++.+.+.... ..+++.+||+.+.+.... .+++ ..+|+|+|.- +.. .+++ .+
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~---~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLES---GVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcC---CCCEEEECHHHHHHHHHcCCcccccc
Confidence 4555 449999998876665422 237888999988665433 3333 4689999973 222 3556 48
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 159 ~~lViDEad 167 (423)
T PRK04837 159 QVVVLDEAD 167 (423)
T ss_pred cEEEEecHH
Confidence 888876544
No 256
>PRK10536 hypothetical protein; Provisional
Probab=29.51 E-value=42 Score=32.21 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=24.6
Q ss_pred CEEEEecccccCCCCcchhHHHHHhCCCC-CcEEEEecCCCh
Q 015049 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 49 (414)
Q Consensus 9 ~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-~~i~l~g~~~~~ 49 (414)
++|||||+|++.- .....++..+.. ..+.++|+..-+
T Consensus 178 ~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 178 AVVILDEAQNVTA----AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred CEEEEechhcCCH----HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 7999999999962 334445555543 456777887543
No 257
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=29.27 E-value=1.6e+02 Score=33.40 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=36.5
Q ss_pred EEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.|++.|+.-+.+.++.+.. .|. .|++++|+++++.|.... ..+|+++|+.
T Consensus 127 ~VvTpn~yLA~qd~e~m~~l~~~lGL-tv~~i~gg~~~~~r~~~y--------~~dIvygT~g 180 (896)
T PRK13104 127 HIVTVNDYLAKRDSQWMKPIYEFLGL-TVGVIYPDMSHKEKQEAY--------KADIVYGTNN 180 (896)
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCc-eEEEEeCCCCHHHHHHHh--------CCCEEEECCh
Confidence 4556687777766665543 454 899999999999886554 3479999986
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=29.20 E-value=26 Score=34.39 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=18.4
Q ss_pred CcCEEEEecccccCCCC--cchhHHHHHhCC
Q 015049 7 DYDCAVIDEIQMLGCKT--RGFSFTRALLGI 35 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~--rG~~~~~~l~~l 35 (414)
+++++||||+|.+..+. ....+-++|..+
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 57899999999975332 123344555444
No 259
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.82 E-value=1.2e+02 Score=31.21 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=45.3
Q ss_pred EEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc------ccccccC-Ccc
Q 015049 92 CIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA------IGMGLNL-NIS 160 (414)
Q Consensus 92 ~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda------l~~Glnl-~i~ 160 (414)
+++.+ ||+-+.+.-+.....| ..++++++|+-+.+ +++...+.+ -++++||.- ++|-+++ .|.
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~e---eqf~~l~~n---pDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIE---EQFILLNEN---PDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHH---HHHHHhccC---CCEEEecCceeeeeehheecccccee
Confidence 45544 9988887666665544 34677777775544 455556543 379999983 4455556 499
Q ss_pred EEEEccc
Q 015049 161 RIIFSTM 167 (414)
Q Consensus 161 ~VI~~~~ 167 (414)
+|||...
T Consensus 167 yVVfdEa 173 (529)
T KOG0337|consen 167 YVVFDEA 173 (529)
T ss_pred eeeehhh
Confidence 9998654
No 260
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.74 E-value=6.8e+02 Score=26.00 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHcC------CceEEeeccccCCCcccccccccccccCCCCEEEEe----cHHHHHHHHHHHHHcCCCe
Q 015049 46 PAAVPLIQQILQVTG------DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF----SRHAIYRLKKAIESRGKHL 115 (414)
Q Consensus 46 ~~~~~~i~~l~~~~~------~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~f----sr~~~~~l~~~L~~~~~~~ 115 (414)
.......+.+...++ ..+.+-...|..+-... ......+++..++|++= |=.+....++.|.+.|..+
T Consensus 288 ~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~--~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~ 365 (439)
T PTZ00145 288 AGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE--KMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARR 365 (439)
T ss_pred cchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE--EEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCE
Confidence 344556666766665 24444444454432211 11122345555666532 6677778888998887544
Q ss_pred --EEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 116 --CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 116 --v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
+++.||=++...... +.+. .++=+|+||++.
T Consensus 366 V~~~~THglfs~~A~~r----l~~s--~i~~IvvTdTIp 398 (439)
T PTZ00145 366 VFAFATHGLFSGPAIER----IEAS--PLEEVVVTDTVK 398 (439)
T ss_pred EEEEEEcccCChhHHHH----HhcC--CCCEEEEeCCCc
Confidence 566699999765433 4444 688899999974
No 261
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=28.58 E-value=26 Score=39.51 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.8
Q ss_pred cCCCcCEEEEecccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d 21 (414)
++...+++||||||.+.|
T Consensus 437 ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 437 LFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCCCCEEEEECcchHHH
Confidence 456678999999999964
No 262
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=28.57 E-value=1.8e+02 Score=30.16 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=48.2
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----cc-cccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----GM-GLNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~~-Glnl-~i 159 (414)
.+|+.+ ||.-+.++.+.+.... ...+..++|+.+..... +.+..+ ..+|+|+|.-. .. .+.+ .+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHHHHHcCCcccccC
Confidence 456544 9999988887776532 23788889987765433 344444 67899999732 22 3445 47
Q ss_pred cEEEEcccccc
Q 015049 160 SRIIFSTMKKF 170 (414)
Q Consensus 160 ~~VI~~~~~k~ 170 (414)
+.||+-....+
T Consensus 239 ~~lViDEah~l 249 (475)
T PRK01297 239 EVMVLDEADRM 249 (475)
T ss_pred ceEEechHHHH
Confidence 78887665543
No 263
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=28.46 E-value=49 Score=31.53 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 47 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~ 47 (414)
.++++|+|||+|-++ .-.+.+-..+.+-. ..+.++|+..
T Consensus 255 ~~~~~i~IDE~QD~s--~~Q~~il~~l~~~~-~~~~~vGD~~ 293 (315)
T PF00580_consen 255 QRYDHILIDEFQDTS--PLQLRILKKLFKNP-ENLFIVGDPN 293 (315)
T ss_dssp HHSSEEEESSGGG-B--HHHHHHHHHHHTTT-TTEEEEE-GG
T ss_pred hhCCeEEeEccccCC--HHHHHHHHHHHHhh-ceeEEeCCCC
Confidence 568999999999886 22233333333332 2488899874
No 264
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=28.29 E-value=71 Score=31.32 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=11.5
Q ss_pred CEEEEecccccCCC
Q 015049 9 DCAVIDEIQMLGCK 22 (414)
Q Consensus 9 ~~vVIDE~h~i~d~ 22 (414)
.+||+||+|.....
T Consensus 174 gvivfDEcH~akn~ 187 (303)
T PF13872_consen 174 GVIVFDECHKAKNL 187 (303)
T ss_pred ceEEeccchhcCCC
Confidence 48999999998644
No 265
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=28.21 E-value=1.2e+02 Score=28.75 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCC--CcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCH
Q 015049 104 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS--SEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 180 (414)
Q Consensus 104 l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~--~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~ 180 (414)
+...+.. +. .+.+++|+-+.+. -.|.++. +...|+|.=+.++||+.++ .-...|...++ ..
T Consensus 103 l~~~~~~-~~-~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~---------~~ 166 (239)
T PF10593_consen 103 LPKAISD-GI-EVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSK---------QY 166 (239)
T ss_pred HHHHHhc-Cc-eEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCc---------hH
Confidence 3344443 44 7888997766543 4444441 1278999999999999984 54445555555 77
Q ss_pred HHHHhhh
Q 015049 181 PEVKQIA 187 (414)
Q Consensus 181 ~~~~Qra 187 (414)
..++||+
T Consensus 167 DTL~Qmg 173 (239)
T PF10593_consen 167 DTLMQMG 173 (239)
T ss_pred HHHHHHh
Confidence 7888874
No 266
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.15 E-value=53 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.6
Q ss_pred cCCCcCEEEEecccccC
Q 015049 4 VVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~ 20 (414)
....++++||||+|+|.
T Consensus 116 ~~g~~KV~IIDEah~Ls 132 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLS 132 (647)
T ss_pred hcCCCEEEEEechHhCC
Confidence 44578999999999997
No 267
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.71 E-value=6.1e+02 Score=25.07 Aligned_cols=103 Identities=8% Similarity=0.147 Sum_probs=63.7
Q ss_pred EEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccccccccccCCCCEEEE---e-cHHHHHHHHHHHHHcCCC--
Q 015049 41 HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT---F-SRHAIYRLKKAIESRGKH-- 114 (414)
Q Consensus 41 ~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~---f-sr~~~~~l~~~L~~~~~~-- 114 (414)
.+.-+.......+.++..++..+.+....|...-.. .. .....++..++|++ . |=.+....++.|.+.|..
T Consensus 173 vV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~~~-~~--~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V 249 (323)
T PRK02458 173 VVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSERE-EG--YIIGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEI 249 (323)
T ss_pred EEEECCChHHHHHHHHHHhCCCEEEEEEecCCCcce-ee--ccccccCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcE
Confidence 344455667788889888887766444433221111 11 11124545556553 3 667777888889888754
Q ss_pred eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc
Q 015049 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152 (414)
Q Consensus 115 ~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~ 152 (414)
.+++.||=++.... +++++. .++=+|+||++.
T Consensus 250 ~~~~tHgif~~~a~----~~l~~s--~i~~iv~TdTi~ 281 (323)
T PRK02458 250 YAVASHGLFAGGAA----EVLENA--PIKEILVTDSVA 281 (323)
T ss_pred EEEEEChhcCchHH----HHHhhC--CCCEEEEECCcC
Confidence 35677999987653 344443 678899999973
No 268
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.52 E-value=86 Score=33.91 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=16.1
Q ss_pred CCcCCCcCEEEEecccccC
Q 015049 2 ADVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~ 20 (414)
.++...++++||||+|++.
T Consensus 127 ~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred chhcCCcEEEEEEChHhCC
Confidence 3566788999999999997
No 269
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=27.13 E-value=68 Score=32.74 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.7
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+...+.+++||||+|.+.
T Consensus 113 p~~~~~kViiIDead~m~ 130 (394)
T PRK07940 113 PSTGRWRIVVIEDADRLT 130 (394)
T ss_pred cccCCcEEEEEechhhcC
Confidence 345678899999999996
No 270
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.05 E-value=70 Score=34.70 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=24.8
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCCC
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 48 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~~ 48 (414)
+....+.++||||+|++... ++..++..+ +...+.++..++.
T Consensus 115 p~~g~~kVIIIDEad~Lt~~----a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 115 PMEGRYKVFIIDEAHMLTRE----AFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred hhcCCceEEEEEChHhCCHH----HHHHHHHHhhccCCCEEEEEecCC
Confidence 34567899999999999621 233333222 3345666555443
No 271
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.00 E-value=88 Score=31.35 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.7
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+.....+++||||+|++.
T Consensus 115 p~~~~~kviIIDEa~~l~ 132 (363)
T PRK14961 115 PSKSRFKVYLIDEVHMLS 132 (363)
T ss_pred cccCCceEEEEEChhhcC
Confidence 344567899999999996
No 272
>PRK13766 Hef nuclease; Provisional
Probab=26.66 E-value=1.9e+02 Score=32.08 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=48.4
Q ss_pred CCEEE-EecHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc------ccccC-C
Q 015049 90 GDCIV-TFSRHAIYRLKKAIESRGK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG------MGLNL-N 158 (414)
Q Consensus 90 g~~Iv-~fsr~~~~~l~~~L~~~~~---~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~------~Glnl-~ 158 (414)
+.++| +.|+..+.+..+.+.+... ..+..++|+.++..|... +.++ +|+|+|.-.- .-+++ .
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~---~~~~----~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL---WEKA----KVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH---HhCC----CEEEECHHHHHHHHHcCCCChhh
Confidence 44555 4488888888888776432 267889999999877544 3333 6999997322 22344 4
Q ss_pred ccEEEEccccc
Q 015049 159 ISRIIFSTMKK 169 (414)
Q Consensus 159 i~~VI~~~~~k 169 (414)
++.||+-....
T Consensus 132 ~~liVvDEaH~ 142 (773)
T PRK13766 132 VSLLIFDEAHR 142 (773)
T ss_pred CcEEEEECCcc
Confidence 78888766554
No 273
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=26.23 E-value=68 Score=29.60 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=19.4
Q ss_pred CEEEEecccccCCCCcchhHHHHHhCCCC-CcEEEEecCCChH
Q 015049 9 DCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVP 50 (414)
Q Consensus 9 ~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-~~i~l~g~~~~~~ 50 (414)
.+|||||||.+. -..+..++.++.. ..+.++|+..-.+
T Consensus 121 ~~iIvDEaQN~t----~~~~k~ilTR~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 121 AFIIVDEAQNLT----PEELKMILTRIGEGSKIIITGDPSQID 159 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE------
T ss_pred eEEEEecccCCC----HHHHHHHHcccCCCcEEEEecCceeec
Confidence 789999999986 2344555666653 5678889886543
No 274
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.13 E-value=82 Score=32.99 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.8
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+......++||||+|++.
T Consensus 113 p~~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 113 PMEGKYKVYIIDEVHMLT 130 (472)
T ss_pred hhcCCeEEEEEEChHHhH
Confidence 345678899999999996
No 275
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=26.09 E-value=2e+02 Score=32.88 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.5
Q ss_pred CEEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccccc
Q 015049 91 DCIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 156 (414)
Q Consensus 91 ~~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Gln 156 (414)
..|++.|+.-+.+.++.+.. .|. .+++++|+++.+.+... + ..+|+|+|+- ..|+|
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGL-sV~~i~GG~~~~eq~~~---y-----~~DIVygTPg-RLgfD 197 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGL-TTGVLVSGSPLEKRKEI---Y-----QCDVVYGTAS-EFGFD 197 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHH---c-----CCCEEEECCC-hhHHH
Confidence 34556688888877776654 343 89999999999987644 2 2479999986 33444
No 276
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=25.88 E-value=24 Score=38.30 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=11.8
Q ss_pred CEEEEecccccCCC
Q 015049 9 DCAVIDEIQMLGCK 22 (414)
Q Consensus 9 ~~vVIDE~h~i~d~ 22 (414)
.+|||||||.+.|.
T Consensus 350 sIvIiDEAHNlidt 363 (821)
T KOG1133|consen 350 SIVIIDEAHNLIDT 363 (821)
T ss_pred cEEEEechhHHHHH
Confidence 58999999998663
No 277
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=25.37 E-value=84 Score=34.76 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.0
Q ss_pred CCcCCCcCEEEEecccccC
Q 015049 2 ADVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~ 20 (414)
.|....++++||||+|++.
T Consensus 113 ~P~~g~~KV~IIDEa~~LT 131 (725)
T PRK07133 113 LPTQSKYKIYIIDEVHMLS 131 (725)
T ss_pred chhcCCCEEEEEEChhhCC
Confidence 3556788999999999997
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=25.36 E-value=1.3e+02 Score=26.45 Aligned_cols=44 Identities=30% Similarity=0.325 Sum_probs=27.6
Q ss_pred CCcCEEEEecccccCCCCcchh----HHHHHhCCCC-CcEEEEecCCChHH
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFS----FTRALLGICA-NELHLCGDPAAVPL 51 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~----~~~~l~~l~a-~~i~l~g~~~~~~~ 51 (414)
..+|++|+||+=... ..|.. +-..+..-|. .++.++|-..+..+
T Consensus 94 ~~~dLlVLDEi~~a~--~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 94 GEYDLVILDEINYAL--GYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred CCCCEEEEechHhHh--hCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 579999999997665 34443 3333444443 46777777766543
No 279
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=25.32 E-value=1.3e+02 Score=32.19 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=35.7
Q ss_pred EEE-EecHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIV-TFSRHAIYRLKKAIESRGK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv-~fsr~~~~~l~~~L~~~~~---~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
||| ..||.-+.++...|.+-|. ..++.+-||..-+.-. -+- ++++|||||+-
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~-----eRi--~~mNILVCTPG 199 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFEL-----ERI--SQMNILVCTPG 199 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHH-----Hhh--hcCCeEEechH
Confidence 555 4599999999998887553 3678888887643222 122 26789999973
No 280
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=25.16 E-value=85 Score=33.66 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=25.0
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCC
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPA 47 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~ 47 (414)
|...+++++||||+|++... ++...+..+ +...+.+++.++
T Consensus 115 p~~~~~KVvIIDEa~~Ls~~----a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLSNS----AFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred hhcCCCEEEEEEChhhcCHH----HHHHHHHhhccCCCCEEEEEecC
Confidence 45678899999999999732 333333222 334455555443
No 281
>PHA00350 putative assembly protein
Probab=25.11 E-value=1.6e+02 Score=30.11 Aligned_cols=16 Identities=44% Similarity=0.237 Sum_probs=12.5
Q ss_pred CcCEEEEecccccCCC
Q 015049 7 DYDCAVIDEIQMLGCK 22 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~ 22 (414)
.=.++||||||.+.-.
T Consensus 81 ~gaLIViDEaq~~~p~ 96 (399)
T PHA00350 81 RGALYVIDEAQMIFPK 96 (399)
T ss_pred CCCEEEEECchhhcCC
Confidence 3359999999998643
No 282
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.06 E-value=71 Score=33.95 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.7
Q ss_pred CcCCCcCEEEEecccccCC
Q 015049 3 DVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d 21 (414)
+...+++++||||+|++..
T Consensus 115 p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 115 PTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred cccCCceEEEEcCcccCCH
Confidence 4556789999999999973
No 283
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.82 E-value=74 Score=36.06 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCCCh
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAV 49 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~~~ 49 (414)
..+++++||||||+|.. .++..++.-+ +...+.+++.++..
T Consensus 117 ~gk~KViIIDEAh~LT~----eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSR----SSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred cCCcEEEEEechHhcCH----HHHHHHHHHHhccCCCeEEEEECCCc
Confidence 45689999999999962 1233332222 34455565554443
No 284
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=24.76 E-value=1.8e+02 Score=35.01 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=50.7
Q ss_pred CEEEEe-cHHHHHHHHHHHHH----------------cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc---
Q 015049 91 DCIVTF-SRHAIYRLKKAIES----------------RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA--- 150 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~----------------~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda--- 150 (414)
.+|++. +|.-+.++.+.|+. .+. ++++.||+.+.++|.++.+ + ..+|||+|.-
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i-~V~vrtGDt~~~eR~rll~---~---ppdILVTTPEsL~ 111 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNL-RVGIRTGDTPAQERSKLTR---N---PPDILITTPESLY 111 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCce-EEEEEECCCCHHHHHHHhc---C---CCCEEEecHHHHH
Confidence 345544 88888877776642 133 7889999999998877543 2 4579999984
Q ss_pred --cc-cc-ccC-CccEEEEccccccCC
Q 015049 151 --IG-MG-LNL-NISRIIFSTMKKFDG 172 (414)
Q Consensus 151 --l~-~G-lnl-~i~~VI~~~~~k~dg 172 (414)
+. .+ -++ .++.||+-....+-|
T Consensus 112 ~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 112 LMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred HHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 11 12 235 599999877666544
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=24.68 E-value=90 Score=27.73 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=14.7
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+......++||||+|.+.
T Consensus 92 ~~~~~~kviiide~~~l~ 109 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMN 109 (188)
T ss_pred cccCCeEEEEEechhhhC
Confidence 445678899999999986
No 286
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=24.61 E-value=42 Score=37.74 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=14.4
Q ss_pred CCCcCEEEEecccccCC
Q 015049 5 VSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d 21 (414)
+..++++||||||.+.+
T Consensus 434 ~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 434 FARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCCCEEEEECcchhHH
Confidence 45789999999999963
No 287
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=24.54 E-value=5.7e+02 Score=23.65 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=55.0
Q ss_pred cEEEEecCCChHHHHHHHHHcCCce----EEeeccccCCCcccccccccccccCCCCEEEEecHHHHHHHHHHHHHcCCC
Q 015049 39 ELHLCGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKH 114 (414)
Q Consensus 39 ~i~l~g~~~~~~~i~~l~~~~~~~~----~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~ 114 (414)
.+.+||.++..+ ++... ..|..+ .....+|.+..+...+... .+++-..+-+|.-...+++.+.+++.+.
T Consensus 3 ~vKICGlt~~ed-a~~a~-~~gad~iG~If~~~SpR~Vs~~~a~~i~~---~v~~~~~VgVf~n~~~~~i~~i~~~~~l- 76 (208)
T COG0135 3 KVKICGLTRLED-AKAAA-KAGADYIGFIFVPKSPRYVSPEQAREIAS---AVPKVKVVGVFVNESIEEILEIAEELGL- 76 (208)
T ss_pred ceEECCCCCHHH-HHHHH-HcCCCEEEEEEcCCCCCcCCHHHHHHHHH---hCCCCCEEEEECCCCHHHHHHHHHhcCC-
Confidence 467899988765 33333 335442 2233556554443332222 2222123445543444445555555555
Q ss_pred eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 115 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 115 ~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
...-+||..+++.=.+.-....-+ -++++....
T Consensus 77 d~VQlHG~e~~~~~~~l~~~~~~~--v~kai~v~~ 109 (208)
T COG0135 77 DAVQLHGDEDPEYIDQLKEELGVP--VIKAISVSE 109 (208)
T ss_pred CEEEECCCCCHHHHHHHHhhcCCc--eEEEEEeCC
Confidence 777899999999877766665222 455555553
No 288
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=24.34 E-value=2.2e+02 Score=32.08 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=39.0
Q ss_pred EEEEecH----HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccccc
Q 015049 92 CIVTFSR----HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 156 (414)
Q Consensus 92 ~Iv~fsr----~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Gln 156 (414)
.|++.|. ++++.+.......|. .|+++.|++++++|..... .+|+++|+. .-|.|
T Consensus 126 ~IvTpn~yLA~rd~e~~~~l~~~LGl-sv~~i~~~~~~~er~~~y~--------~dI~ygT~~-elgfD 184 (830)
T PRK12904 126 HVVTVNDYLAKRDAEWMGPLYEFLGL-SVGVILSGMSPEERREAYA--------ADITYGTNN-EFGFD 184 (830)
T ss_pred EEEecCHHHHHHHHHHHHHHHhhcCC-eEEEEcCCCCHHHHHHhcC--------CCeEEECCc-chhhh
Confidence 4666664 455555555555676 9999999999999888742 479999986 44444
No 289
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.27 E-value=2.3e+02 Score=22.70 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=35.5
Q ss_pred EEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhh
Q 015049 94 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 136 (414)
Q Consensus 94 v~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~ 136 (414)
.++..-.+++++..++..+. .+.+++..|+|.+....++.+.
T Consensus 39 ~~iG~GK~eei~~~~~~~~~-d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 39 TYIGSGKVEEIKELIEELDA-DLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred eeechhHHHHHHHHHhhcCC-CEEEECCCCCHHHHHHHHHHHC
Confidence 35677788999998888887 8888899999999999988884
No 290
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=24.23 E-value=2.2e+02 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=35.7
Q ss_pred EEEEecHHHHHHHHHHHH----HcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIVTFSRHAIYRLKKAIE----SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~----~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.|++.|+--+.+.++.+. ..|. .+++++|+++++.|.... ..+|+++|+.
T Consensus 101 ~VvTpt~~LA~qdae~~~~l~~~LGL-sv~~i~g~~~~~~r~~~y--------~~dIvyGT~~ 154 (745)
T TIGR00963 101 HVVTVNDYLAQRDAEWMGQVYRFLGL-SVGLILSGMSPEERREAY--------ACDITYGTNN 154 (745)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCC-eEEEEeCCCCHHHHHHhc--------CCCEEEECCC
Confidence 355668766666555444 3455 899999999998776554 2479999998
No 291
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=24.07 E-value=2.1e+02 Score=32.55 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=41.5
Q ss_pred EEEEec----HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc
Q 015049 92 CIVTFS----RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 92 ~Iv~fs----r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal 151 (414)
.||+.+ +++++.+...++..|. .|+++.|++++++|..+.. ++|+.+|.+.
T Consensus 127 hvvT~ndyLA~RD~e~m~~l~~~lGl-~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e 181 (913)
T PRK13103 127 HVVTVNDYLARRDANWMRPLYEFLGL-SVGIVTPFQPPEEKRAAYA--------ADITYGTNNE 181 (913)
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCC-EEEEECCCCCHHHHHHHhc--------CCEEEEcccc
Confidence 455553 7788888888888887 9999999999999998764 5799999874
No 292
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.83 E-value=3.4e+02 Score=20.84 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=32.5
Q ss_pred CEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccc
Q 015049 91 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 154 (414)
Q Consensus 91 ~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~G 154 (414)
.+|++-.+.++..+.+..-. ..+...+|....+...+...+..+ .|+++||.=..|
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~---~~~i~t~Gt~~~~~~~~~l~~~~~-----~VIiltD~D~aG 58 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE---AEIIETNGSIINKETIELIKKAYR-----GVIILTDPDRKG 58 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC---ccEEEECCCcCCHHHHHHHHHhCC-----EEEEEECCCHHH
Confidence 34556689999877665421 234445665555445555555532 499999953333
No 293
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=23.70 E-value=86 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.3
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+....++++||||+|++.
T Consensus 113 P~~~~~KVvIIDEad~Lt 130 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLT 130 (535)
T ss_pred cccCCeEEEEEECcccCC
Confidence 455678999999999997
No 294
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=23.53 E-value=9.6e+02 Score=25.95 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=23.4
Q ss_pred cCCCCHHHHHH-------HHHHhhCCCCcccEEEEcCcc
Q 015049 120 YGSLPPETRTR-------QATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 120 hg~L~~e~R~~-------~~~~F~~g~~~~~VLVaTdal 151 (414)
.+++|+..|.. +++-|++. ..+|++-.|.+
T Consensus 297 TSn~Pv~aR~~s~ytgiTiAEYfRd~--G~~Vllm~DSt 333 (586)
T PRK04192 297 TSNMPVAAREASIYTGITIAEYYRDM--GYDVLLMADST 333 (586)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC--CCCEEEEecCh
Confidence 68899998864 57889886 67888877765
No 295
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=23.39 E-value=76 Score=34.19 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=25.7
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCC-CCcEEEEecCCC
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 48 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-a~~i~l~g~~~~ 48 (414)
.+|++||||+=|+.- ..+..++..++ ..++.++|+..-
T Consensus 259 ~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 259 PLDVLVVDEASMVDL----PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred cccEEEEcccccCCH----HHHHHHHHhcCCCCEEEEECChhh
Confidence 589999999999962 23444455555 356788887643
No 296
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=4e+02 Score=24.84 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=58.8
Q ss_pred cccCCCCChHHHHHHHHHHHHHhhcCccccccccCCCCCC---CcccHH------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 015049 295 ISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQ---VPKTQA------ALRELESIHKVLDLYVWLSFRLEES 365 (414)
Q Consensus 295 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~l~~le~~~~~~~~y~wls~r~~~~ 365 (414)
..|.+.+.+...+.+-+|+..+.-.....+.+...++.++ .+-+.+ .-.+.|.--..+.-|..-..|- .-
T Consensus 86 t~pF~gRveKL~Sv~~Sf~tS~f~r~~~~~~p~~~~~sFDsR~V~~~~~~i~dYf~wRQ~eawrN~L~s~tfW~L~~-rg 164 (249)
T COG4021 86 TVPFNGRVEKLDSVFASFFTSAFTRLWAKFFPEKHLPSFDSRCVAYPLDTIPDYFHWRQVEAWRNNLYSTTFWQLII-RG 164 (249)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccceEEecchhHHHHHHHHHHHHHHHHhhhhHHHHHHHH-cC
Confidence 5599999888888888888776553222222221222222 111122 2345677777777776555676 55
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 015049 366 FPDRELAASQKAICSMLIEEFLE 388 (414)
Q Consensus 366 f~~~~~~~~~~~~~~~~i~~~l~ 388 (414)
+...+.+..+|...+.-..+.|=
T Consensus 165 l~~~ea~erLrG~ks~e~heiLf 187 (249)
T COG4021 165 LTPQEAEERLRGTKSNEKHEILF 187 (249)
T ss_pred CChHHHHHHhcccccchHHHHHH
Confidence 67789999999988887777775
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=23.15 E-value=79 Score=30.96 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
.+.+++||||+|.+.
T Consensus 98 ~~~kviiiDE~d~lt 112 (319)
T PLN03025 98 GRHKIVILDEADSMT 112 (319)
T ss_pred CCeEEEEEechhhcC
Confidence 357899999999996
No 298
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.12 E-value=97 Score=33.33 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.6
Q ss_pred CcCCCcCEEEEecccccCC
Q 015049 3 DVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d 21 (414)
+.....+++||||+|++.+
T Consensus 116 p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 116 PALARYKVYIIDEVHMLST 134 (585)
T ss_pred cccCCeEEEEEeChHhCCH
Confidence 4556789999999999973
No 299
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.11 E-value=1.5e+02 Score=31.01 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.2
Q ss_pred cCEEEEecccccCCCCcchhHHHH-HhCCCCCcEEEEecCCChHHHHHHHHH
Q 015049 8 YDCAVIDEIQMLGCKTRGFSFTRA-LLGICANELHLCGDPAAVPLIQQILQV 58 (414)
Q Consensus 8 v~~vVIDE~h~i~d~~rG~~~~~~-l~~l~a~~i~l~g~~~~~~~i~~l~~~ 58 (414)
.=++|+||.|.+.....+.-++.. +-.++...+.++|-+...++-.++.-.
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 347899999998743333333322 234566788999999998877766654
No 300
>PHA00012 I assembly protein
Probab=23.03 E-value=1.4e+02 Score=29.85 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=26.0
Q ss_pred CcCEEEEecccccCCCCcchh------HHHHHhCCCCCcEEEEecCCChHHHHHHH
Q 015049 7 DYDCAVIDEIQMLGCKTRGFS------FTRALLGICANELHLCGDPAAVPLIQQIL 56 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~------~~~~l~~l~a~~i~l~g~~~~~~~i~~l~ 56 (414)
.-.++||||||+... .|+|. +...+.........++-.+-....+....
T Consensus 81 ~gsLlVlDEaq~~fp-~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~I 135 (361)
T PHA00012 81 KNGLLVLDECGTWFN-SRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQA 135 (361)
T ss_pred CCcEEEEECcccccC-CCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHH
Confidence 457899999999863 34433 55544444433333333333333343333
No 301
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.69 E-value=1e+02 Score=33.48 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.7
Q ss_pred CCcCCCcCEEEEecccccCC
Q 015049 2 ADVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d 21 (414)
.++...++++||||+|++..
T Consensus 116 ~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred CcccCCcEEEEEECcccCCH
Confidence 35677899999999999973
No 302
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.63 E-value=95 Score=31.56 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.4
Q ss_pred CCcCCCcCEEEEecccccCC
Q 015049 2 ADVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d 21 (414)
.|+.....++||||+|.+..
T Consensus 122 ~p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 122 GPQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred chhcCCeEEEEEeChhhCCH
Confidence 35667889999999999973
No 303
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=22.52 E-value=92 Score=28.01 Aligned_cols=15 Identities=33% Similarity=0.087 Sum_probs=11.5
Q ss_pred CcCEEEEecccccCC
Q 015049 7 DYDCAVIDEIQMLGC 21 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d 21 (414)
.=.++||||||....
T Consensus 79 ~~~liviDEa~~~~~ 93 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFP 93 (193)
T ss_dssp TT-EEEETTGGGTSB
T ss_pred CCcEEEEECChhhcC
Confidence 346899999999864
No 304
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=22.32 E-value=2e+02 Score=32.05 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC--CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-cccccc---------c
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-AIGMGL---------N 156 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~--~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-al~~Gl---------n 156 (414)
..+|+.+ ||.-+.+..+.+.+.+ ..++++++|+.+.++|..+ ++ ..+|+|+|. .+-.++ .
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~---~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----RE---HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc---CCCEEEEChHHHHHhhccchhHHHHH
Confidence 3456544 9999998888887653 2378889999998776433 33 347999996 332222 1
Q ss_pred C-CccEEEEccccccCCcccccCCHHHHHhhhcc
Q 015049 157 L-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 189 (414)
Q Consensus 157 l-~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGR 189 (414)
+ +++.||+-....|.|. ..-....++.|.-|
T Consensus 155 l~~l~~vViDEah~~~g~--fg~~~~~il~rL~r 186 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGV--FGSHVALVLRRLRR 186 (742)
T ss_pred HhcCCEEEEeChhhccCc--cHHHHHHHHHHHHH
Confidence 4 5889998887777652 11134445555433
No 305
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.00 E-value=3.6e+02 Score=23.77 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCEEEEe--cHHHHHHHHHHHHHcC--CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE
Q 015049 90 GDCIVTF--SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 146 (414)
Q Consensus 90 g~~Iv~f--sr~~~~~l~~~L~~~~--~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV 146 (414)
+..|+++ +-..++.+++.|.+.. ..-++.+||-.++++-..+.+..+.. +.++|+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~ 106 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVF 106 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEE
Confidence 3456666 6677778888888763 32344667878888899999988875 545543
No 306
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.92 E-value=88 Score=34.42 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.2
Q ss_pred CcCCCcCEEEEecccccCC
Q 015049 3 DVVSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d 21 (414)
+...+++++||||+|++..
T Consensus 115 P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 115 PTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred hhhCCcEEEEEECccccCH
Confidence 3456789999999999873
No 307
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.71 E-value=1.1e+02 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=13.9
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+....++++||||+|.|.
T Consensus 98 ~~~~~~KviiI~~ad~l~ 115 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT 115 (162)
T ss_dssp -TTSSSEEEEEETGGGS-
T ss_pred HhcCCceEEEeehHhhhh
Confidence 344678999999999996
No 308
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=21.51 E-value=2.6e+02 Score=31.34 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEEEecHHHHHH----HHHHHHHcCCCeEEEecCCCC-HHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIVTFSRHAIYR----LKKAIESRGKHLCSIVYGSLP-PETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv~fsr~~~~~----l~~~L~~~~~~~v~~ihg~L~-~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.|++.|+--+.+ +....+..|. .|+++.|+++ +++|.... ..+|+++|+.
T Consensus 123 ~VvTpt~~LA~qd~e~~~~l~~~lGl-~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~ 177 (790)
T PRK09200 123 HLITVNDYLAKRDAEEMGQVYEFLGL-TVGLNFSDIDDASEKKAIY--------EADIIYTTNS 177 (790)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCC-eEEEEeCCCCcHHHHHHhc--------CCCEEEECCc
Confidence 455667655554 4444455666 9999999999 88877432 3579999953
No 309
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=21.46 E-value=1e+03 Score=25.83 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=32.6
Q ss_pred CHHHHHhhhcccCCCCCCCCceEEEEec-----CCCH-----HHHHHhhCCC---CcccccCCCCCCHHHHHHHHhcC
Q 015049 179 TVPEVKQIAGRAGRYGSKFPVGEVTCLD-----SEDL-----PLLHKSLLEP---SPMLESAGLFPNFDLIYMYSRLH 243 (414)
Q Consensus 179 s~~~~~QraGRAGR~g~~~~~G~v~~~~-----~~d~-----~~l~~~l~~~---~~~i~~~~i~p~~~~l~~~~~~~ 243 (414)
...+++-|+||.--.|...+.|-||.+. ..|+ ...+..+... ...+...+.+|..+.+..++...
T Consensus 364 rLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~ 441 (591)
T TIGR01042 364 RLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM 441 (591)
T ss_pred HHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhh
Confidence 4567788888763222211123333321 1232 2233333333 23455677888888777766543
No 310
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=21.17 E-value=1e+02 Score=24.92 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=23.8
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCC-----CCcEEEEecCCC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-----ANELHLCGDPAA 48 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-----a~~i~l~g~~~~ 48 (414)
.+..++|+||+|.+. ......+...+.... ...+.++..+..
T Consensus 83 ~~~~~lilDe~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 83 AKPGVLFIDEIDSLS-RGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred CCCeEEEEeChhhhh-HHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 456899999999883 223334445554443 234555544443
No 311
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.99 E-value=95 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.6
Q ss_pred CcCEEEEecccccCCC
Q 015049 7 DYDCAVIDEIQMLGCK 22 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~ 22 (414)
+.+++|+||+|...+.
T Consensus 123 ~~~~~i~DE~h~~~~~ 138 (477)
T PF03354_consen 123 NPSLAIFDELHAHKDD 138 (477)
T ss_pred CCceEEEeCCCCCCCH
Confidence 5789999999999753
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=20.91 E-value=1.1e+02 Score=30.72 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=14.2
Q ss_pred cCCCcCEEEEecccccC
Q 015049 4 VVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~ 20 (414)
....+.++||||||.+.
T Consensus 138 ~~g~~rVviIDeAd~l~ 154 (351)
T PRK09112 138 GDGNWRIVIIDPADDMN 154 (351)
T ss_pred ccCCceEEEEEchhhcC
Confidence 34578899999999996
No 313
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=20.56 E-value=24 Score=38.56 Aligned_cols=91 Identities=21% Similarity=0.148 Sum_probs=64.9
Q ss_pred HHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccC-CccEEEEccccccCCcccccCCHHH
Q 015049 104 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPE 182 (414)
Q Consensus 104 l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl-~i~~VI~~~~~k~dg~~~~~ls~~~ 182 (414)
+...|...+. ...-+-|.+....|......|..+.+..-.+++.-+.+-|+|+ .+.+|+..+.-. ++..
T Consensus 555 ~~~~l~~~~~-~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w---------np~~ 624 (674)
T KOG1001|consen 555 VCLRLFFKGF-VFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW---------NPAV 624 (674)
T ss_pred hhhhhhhccc-ccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc---------ChHH
Confidence 3333434444 5556679999999999999999764444456788899999998 677887777554 7888
Q ss_pred HHhhhcccCCCCCCCCceEEEEe
Q 015049 183 VKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 183 ~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
--|-+-||-|-|+. -.-.|+.+
T Consensus 625 eeQaidR~hrigq~-k~v~v~r~ 646 (674)
T KOG1001|consen 625 EEQAIDRAHRIGQT-KPVKVSRF 646 (674)
T ss_pred HHHHHHHHHHhccc-ceeeeeee
Confidence 88888888888876 23444333
No 314
>PRK08084 DNA replication initiation factor; Provisional
Probab=20.49 E-value=54 Score=30.64 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.8
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
.++++++|||+|.+.
T Consensus 96 ~~~dlliiDdi~~~~ 110 (235)
T PRK08084 96 EQLSLVCIDNIECIA 110 (235)
T ss_pred hhCCEEEEeChhhhc
Confidence 456899999999986
No 315
>PRK08727 hypothetical protein; Validated
Probab=20.47 E-value=63 Score=30.15 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=13.8
Q ss_pred CCCcCEEEEecccccC
Q 015049 5 VSDYDCAVIDEIQMLG 20 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~ 20 (414)
..+++++||||+|.+.
T Consensus 91 l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 91 LEGRSLVALDGLESIA 106 (233)
T ss_pred HhcCCEEEEeCccccc
Confidence 4578999999999986
No 316
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=20.26 E-value=3.7e+02 Score=28.36 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=44.7
Q ss_pred CEEE-EecHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----cccc-cccC-Cc
Q 015049 91 DCIV-TFSRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGM-GLNL-NI 159 (414)
Q Consensus 91 ~~Iv-~fsr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~-Glnl-~i 159 (414)
.+|| +.||.-+.++.+.+...+ ..++..++||-+.... ....+. ..+|+|+|. .+.. ++++ .+
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q---~~~l~~---~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ---LYRIQQ---GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH---HHHhcC---CCCEEEECHHHHHHHHHcCCccchhe
Confidence 3555 449998887766665432 2256777877665433 233444 468999994 4444 4566 48
Q ss_pred cEEEEccccc
Q 015049 160 SRIIFSTMKK 169 (414)
Q Consensus 160 ~~VI~~~~~k 169 (414)
+.||+-....
T Consensus 272 ~~lViDEad~ 281 (518)
T PLN00206 272 SVLVLDEVDC 281 (518)
T ss_pred eEEEeecHHH
Confidence 8888765443
No 317
>PTZ00293 thymidine kinase; Provisional
Probab=20.10 E-value=53 Score=30.46 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=13.5
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
+++++|.|||+|.+.
T Consensus 76 ~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 76 KNYDVIAIDEGQFFP 90 (211)
T ss_pred cCCCEEEEEchHhhH
Confidence 678999999999984
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=20.08 E-value=72 Score=29.64 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.7
Q ss_pred CCCcCEEEEecccccC
Q 015049 5 VSDYDCAVIDEIQMLG 20 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~ 20 (414)
..+++++||||+|.+.
T Consensus 89 ~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 89 LEQQDLVCLDDLQAVI 104 (229)
T ss_pred cccCCEEEEeChhhhc
Confidence 4578999999999885
No 319
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=20.04 E-value=66 Score=37.35 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCCh
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 49 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~ 49 (414)
+++.++|+||+|.|- +-+...|..+|---+..++.++|++--.
T Consensus 736 krWqyLvLDEaqnIK-nfksqrWQAllnfnsqrRLLLtgTPLqN 778 (1958)
T KOG0391|consen 736 KRWQYLVLDEAQNIK-NFKSQRWQALLNFNSQRRLLLTGTPLQN 778 (1958)
T ss_pred hccceeehhhhhhhc-chhHHHHHHHhccchhheeeecCCchhh
Confidence 568899999999996 2344556655544455677777776443
Done!