Query 015049
Match_columns 414
No_of_seqs 330 out of 2401
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 100.0 5.1E-62 1.8E-66 520.0 40.4 388 2-390 234-628 (677)
2 4f92_B U5 small nuclear ribonu 99.9 5.4E-26 1.8E-30 263.2 17.1 229 4-237 204-501 (1724)
3 2xgj_A ATP-dependent RNA helic 99.9 4.1E-25 1.4E-29 245.5 20.0 229 3-236 188-527 (1010)
4 2zj8_A DNA helicase, putative 99.9 6E-25 2.1E-29 237.3 20.8 219 4-227 135-407 (720)
5 4a4z_A Antiviral helicase SKI2 99.9 4.4E-25 1.5E-29 245.2 20.1 226 4-234 144-519 (997)
6 4f92_B U5 small nuclear ribonu 99.9 7.8E-25 2.7E-29 253.5 20.4 220 4-228 1043-1327(1724)
7 2va8_A SSO2462, SKI2-type heli 99.9 1.1E-24 3.8E-29 235.0 18.3 218 4-227 142-429 (715)
8 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-24 4.7E-29 233.9 16.6 219 4-227 135-408 (702)
9 1oyw_A RECQ helicase, ATP-depe 99.9 4.4E-24 1.5E-28 222.6 17.7 197 6-219 138-354 (523)
10 2db3_A ATP-dependent RNA helic 99.9 2.6E-23 8.8E-28 211.8 20.6 186 5-206 201-404 (434)
11 3l9o_A ATP-dependent RNA helic 99.9 1.9E-24 6.4E-29 242.3 12.7 227 5-236 288-625 (1108)
12 2v1x_A ATP-dependent DNA helic 99.9 1.5E-22 5.3E-27 213.6 21.5 229 5-257 163-417 (591)
13 1s2m_A Putative ATP-dependent 99.9 1.1E-22 3.8E-27 203.3 19.3 204 5-223 161-383 (400)
14 1hv8_A Putative ATP-dependent 99.9 3.2E-22 1.1E-26 196.7 21.5 201 5-221 145-361 (367)
15 3eiq_A Eukaryotic initiation f 99.9 4E-23 1.4E-27 207.1 15.3 203 5-222 181-404 (414)
16 2j0s_A ATP-dependent RNA helic 99.9 1.3E-22 4.6E-27 203.6 18.9 205 5-224 177-402 (410)
17 3i5x_A ATP-dependent RNA helic 99.9 1.1E-22 3.6E-27 213.3 18.4 223 4-243 223-485 (563)
18 3fht_A ATP-dependent RNA helic 99.9 1.7E-22 5.7E-27 202.2 18.8 210 6-224 167-399 (412)
19 3pey_A ATP-dependent RNA helic 99.9 2.6E-22 8.9E-27 199.3 18.9 194 5-207 143-354 (395)
20 2i4i_A ATP-dependent RNA helic 99.9 3.2E-22 1.1E-26 200.9 18.8 192 5-211 173-386 (417)
21 1xti_A Probable ATP-dependent 99.9 3.3E-22 1.1E-26 198.9 18.4 188 5-207 150-355 (391)
22 3sqw_A ATP-dependent RNA helic 99.9 8.6E-22 3E-26 207.5 19.2 223 4-243 172-434 (579)
23 2z0m_A 337AA long hypothetical 99.9 4.4E-22 1.5E-26 193.6 15.3 192 5-215 127-329 (337)
24 1fuu_A Yeast initiation factor 99.9 2.1E-22 7.2E-27 200.3 6.0 187 5-206 160-363 (394)
25 3fmp_B ATP-dependent RNA helic 99.9 2.2E-22 7.4E-27 206.9 5.5 192 6-206 234-443 (479)
26 3fho_A ATP-dependent RNA helic 99.9 7.3E-22 2.5E-26 205.0 9.2 213 5-224 257-490 (508)
27 2whx_A Serine protease/ntpase/ 99.8 5.8E-21 2E-25 202.4 15.5 267 4-303 274-560 (618)
28 2xau_A PRE-mRNA-splicing facto 99.8 1.4E-20 4.9E-25 204.1 14.9 277 3-296 204-533 (773)
29 2rb4_A ATP-dependent RNA helic 99.8 4.8E-20 1.6E-24 164.5 15.2 129 86-223 31-165 (175)
30 2hjv_A ATP-dependent RNA helic 99.8 5.7E-20 2E-24 162.2 15.1 112 87-213 33-147 (163)
31 3eaq_A Heat resistant RNA depe 99.8 5.4E-20 1.8E-24 169.6 14.8 118 88-220 30-153 (212)
32 1yks_A Genome polyprotein [con 99.8 4.4E-21 1.5E-25 195.8 7.4 108 89-205 177-295 (440)
33 2jlq_A Serine protease subunit 99.8 2.5E-20 8.6E-25 190.7 11.1 190 4-206 107-308 (451)
34 1fuk_A Eukaryotic initiation f 99.8 8.6E-20 2.9E-24 161.3 12.6 122 87-223 28-155 (165)
35 1t5i_A C_terminal domain of A 99.8 6.9E-20 2.3E-24 163.3 11.8 106 87-207 29-136 (172)
36 2wv9_A Flavivirin protease NS2 99.8 4E-20 1.4E-24 197.5 11.3 108 88-205 409-529 (673)
37 2p6n_A ATP-dependent RNA helic 99.8 5E-19 1.7E-23 160.6 13.9 103 89-206 54-158 (191)
38 3o8b_A HCV NS3 protease/helica 99.8 1.4E-19 4.7E-24 191.7 11.3 184 5-209 316-515 (666)
39 2v6i_A RNA helicase; membrane, 99.8 2.1E-19 7.2E-24 182.8 12.1 109 89-206 171-288 (431)
40 2z83_A Helicase/nucleoside tri 99.8 6.4E-20 2.2E-24 188.1 8.3 108 89-205 190-309 (459)
41 3i32_A Heat resistant RNA depe 99.8 5.6E-19 1.9E-23 171.3 13.4 119 88-221 27-151 (300)
42 2jgn_A DBX, DDX3, ATP-dependen 99.8 4.6E-19 1.6E-23 159.9 11.4 103 89-206 46-150 (185)
43 1wp9_A ATP-dependent RNA helic 99.8 3.1E-18 1.1E-22 173.3 17.3 95 89-195 361-465 (494)
44 3oiy_A Reverse gyrase helicase 99.8 5.5E-19 1.9E-23 178.0 11.4 104 89-211 252-366 (414)
45 4gl2_A Interferon-induced heli 99.8 2.3E-18 7.9E-23 184.7 13.1 94 89-194 400-509 (699)
46 2yjt_D ATP-dependent RNA helic 99.6 6.7E-20 2.3E-24 162.9 0.0 104 88-206 29-134 (170)
47 2eyq_A TRCF, transcription-rep 99.7 1.1E-17 3.7E-22 188.5 15.5 185 5-208 723-921 (1151)
48 4a2p_A RIG-I, retinoic acid in 99.7 5.3E-18 1.8E-22 176.2 11.6 101 89-206 390-505 (556)
49 3tbk_A RIG-I helicase domain; 99.7 1.1E-17 3.7E-22 173.5 11.8 103 90-208 390-506 (555)
50 2oca_A DAR protein, ATP-depend 99.7 6E-18 2E-22 175.0 9.4 106 89-206 347-455 (510)
51 1c4o_A DNA nucleotide excision 99.7 1.3E-16 4.5E-21 170.5 17.4 109 89-208 439-549 (664)
52 2ykg_A Probable ATP-dependent 99.7 1.7E-17 5.8E-22 177.9 9.9 103 89-208 398-515 (696)
53 2d7d_A Uvrabc system protein B 99.7 7.5E-17 2.6E-21 172.3 13.3 108 90-208 446-555 (661)
54 1gm5_A RECG; helicase, replica 99.7 1.7E-17 5.7E-22 179.6 7.7 95 99-207 597-695 (780)
55 2fwr_A DNA repair protein RAD2 99.7 1.6E-17 5.6E-22 170.1 7.0 101 89-206 349-451 (472)
56 1gku_B Reverse gyrase, TOP-RG; 99.7 2.3E-17 7.8E-22 184.6 8.7 152 5-168 173-352 (1054)
57 4a2q_A RIG-I, retinoic acid in 99.7 5.1E-17 1.8E-21 177.3 11.0 101 89-206 631-746 (797)
58 4ddu_A Reverse gyrase; topoiso 99.7 1.5E-16 5.3E-21 178.2 11.2 72 89-169 309-388 (1104)
59 3h1t_A Type I site-specific re 99.7 4.6E-16 1.6E-20 164.0 14.0 107 90-206 440-558 (590)
60 4a2w_A RIG-I, retinoic acid in 99.7 1.6E-16 5.4E-21 176.1 10.6 93 89-194 631-738 (936)
61 3dmq_A RNA polymerase-associat 99.6 5.4E-16 1.9E-20 172.2 13.9 105 89-204 503-610 (968)
62 1z63_A Helicase of the SNF2/RA 99.6 9.3E-15 3.2E-19 150.6 13.5 104 90-205 342-449 (500)
63 3jux_A Protein translocase sub 99.5 3.4E-13 1.2E-17 142.1 16.5 92 91-196 476-577 (822)
64 1z3i_X Similar to RAD54-like; 99.5 2.9E-13 9.9E-18 144.3 15.0 104 91-205 418-524 (644)
65 1z5z_A Helicase of the SNF2/RA 99.5 1.3E-13 4.4E-18 131.7 9.7 105 89-205 112-220 (271)
66 1tf5_A Preprotein translocase 99.4 1.7E-13 5.9E-18 147.0 10.4 98 91-205 434-541 (844)
67 3mwy_W Chromo domain-containin 99.4 1.7E-12 5.8E-17 141.6 12.9 104 91-205 574-680 (800)
68 2fsf_A Preprotein translocase 99.3 2.5E-12 8.6E-17 137.8 11.3 99 89-204 440-578 (853)
69 1nkt_A Preprotein translocase 99.3 8.9E-12 3.1E-16 133.9 11.5 100 89-205 459-613 (922)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 2.7E-10 9.3E-15 126.6 17.1 79 127-217 637-716 (1038)
71 2vl7_A XPD; helicase, unknown 97.2 0.00034 1.2E-08 72.6 6.8 109 88-207 383-520 (540)
72 2ipc_A Preprotein translocase 97.1 0.0068 2.3E-07 65.7 15.5 25 178-203 670-694 (997)
73 1vec_A ATP-dependent RNA helic 96.2 0.0084 2.9E-07 53.1 6.7 59 5-63 144-203 (206)
74 2pl3_A Probable ATP-dependent 95.9 0.011 3.6E-07 53.8 6.1 55 5-59 169-223 (236)
75 2gxq_A Heat resistant RNA depe 95.9 0.012 4.2E-07 51.9 6.3 55 5-59 142-196 (207)
76 3fe2_A Probable ATP-dependent 95.7 0.013 4.3E-07 53.7 5.8 62 4-65 173-235 (242)
77 3iuy_A Probable ATP-dependent 95.5 0.0098 3.3E-07 53.7 4.4 54 5-58 165-218 (228)
78 3ly5_A ATP-dependent RNA helic 95.5 0.011 3.6E-07 55.1 4.6 54 5-58 199-252 (262)
79 1qde_A EIF4A, translation init 95.5 0.016 5.3E-07 52.1 5.5 61 5-65 153-214 (224)
80 3ber_A Probable ATP-dependent 95.4 0.02 6.9E-07 52.8 6.1 61 5-65 184-245 (249)
81 3bor_A Human initiation factor 94.9 0.029 9.8E-07 51.1 5.6 60 5-64 171-231 (237)
82 1wrb_A DJVLGB; RNA helicase, D 94.9 0.034 1.2E-06 51.0 6.0 55 5-59 172-230 (253)
83 4a15_A XPD helicase, ATP-depen 94.9 0.023 7.8E-07 59.9 5.3 109 89-207 448-583 (620)
84 1q0u_A Bstdead; DEAD protein, 94.8 0.029 9.9E-07 50.3 5.1 61 5-65 148-209 (219)
85 2oxc_A Probable ATP-dependent 94.6 0.026 8.7E-07 51.2 4.3 53 5-57 164-217 (230)
86 3fmo_B ATP-dependent RNA helic 94.3 0.035 1.2E-06 52.8 4.8 55 5-59 233-288 (300)
87 1t6n_A Probable ATP-dependent 92.9 0.045 1.5E-06 48.9 2.6 53 5-57 156-209 (220)
88 3dkp_A Probable ATP-dependent 92.8 0.12 4.1E-06 46.9 5.4 62 5-66 173-239 (245)
89 3crv_A XPD/RAD3 related DNA he 92.2 0.51 1.7E-05 48.7 9.8 106 89-207 393-530 (551)
90 3llm_A ATP-dependent RNA helic 88.7 0.27 9.3E-06 44.5 3.6 54 5-61 174-229 (235)
91 3oiy_A Reverse gyrase helicase 87.9 1.2 4.2E-05 43.5 8.0 76 89-167 64-148 (414)
92 1gm5_A RECG; helicase, replica 87.8 1.6 5.4E-05 47.1 9.3 78 90-170 418-502 (780)
93 1rif_A DAR protein, DNA helica 86.1 0.42 1.4E-05 44.4 3.3 30 4-37 222-251 (282)
94 3b6e_A Interferon-induced heli 80.4 0.67 2.3E-05 40.5 2.0 17 5-21 160-176 (216)
95 4ddu_A Reverse gyrase; topoiso 78.6 3.5 0.00012 46.1 7.5 77 90-168 122-206 (1104)
96 2v1x_A ATP-dependent DNA helic 76.6 6 0.0002 41.0 8.1 79 89-168 84-175 (591)
97 1oyw_A RECQ helicase, ATP-depe 73.6 7.2 0.00025 39.6 7.8 77 90-169 66-150 (523)
98 2eyq_A TRCF, transcription-rep 66.9 14 0.00049 41.4 8.8 78 91-170 654-737 (1151)
99 1t6n_A Probable ATP-dependent 60.0 33 0.0011 29.6 8.4 74 91-169 84-169 (220)
100 3fe2_A Probable ATP-dependent 56.3 39 0.0013 29.8 8.3 72 90-168 103-186 (242)
101 3bor_A Human initiation factor 54.3 32 0.0011 30.3 7.4 74 90-168 99-183 (237)
102 2oxc_A Probable ATP-dependent 53.2 38 0.0013 29.6 7.7 73 90-169 93-177 (230)
103 3hgt_A HDA1 complex subunit 3; 52.3 77 0.0026 30.1 9.9 89 89-193 124-220 (328)
104 2orw_A Thymidine kinase; TMTK, 50.2 14 0.00048 31.8 4.1 39 7-48 76-114 (184)
105 1w36_D RECD, exodeoxyribonucle 50.1 15 0.00051 38.1 5.0 41 7-51 262-303 (608)
106 3ber_A Probable ATP-dependent 48.6 56 0.0019 29.1 8.1 71 91-168 113-196 (249)
107 2pl3_A Probable ATP-dependent 48.0 41 0.0014 29.4 7.0 72 90-168 98-181 (236)
108 2j9r_A Thymidine kinase; TK1, 44.5 21 0.00072 31.9 4.4 36 7-45 101-136 (214)
109 3e1s_A Exodeoxyribonuclease V, 44.4 19 0.00066 37.0 4.7 38 7-48 279-317 (574)
110 2fsf_A Preprotein translocase 44.1 36 0.0012 36.7 6.8 52 90-150 117-172 (853)
111 1vec_A ATP-dependent RNA helic 44.1 67 0.0023 27.1 7.7 72 91-168 73-156 (206)
112 3ly5_A ATP-dependent RNA helic 43.4 1.1E+02 0.0036 27.4 9.2 73 90-168 127-211 (262)
113 1xti_A Probable ATP-dependent 42.9 73 0.0025 29.8 8.4 74 91-169 78-163 (391)
114 1tf5_A Preprotein translocase 42.1 37 0.0013 36.7 6.4 49 92-149 128-180 (844)
115 2l82_A Designed protein OR32; 42.0 1.2E+02 0.004 23.9 7.7 46 92-138 4-51 (162)
116 2orv_A Thymidine kinase; TP4A 41.6 20 0.0007 32.4 3.8 37 6-46 89-125 (234)
117 1gku_B Reverse gyrase, TOP-RG; 40.1 31 0.001 38.3 5.7 56 90-149 100-163 (1054)
118 3iuy_A Probable ATP-dependent 38.7 50 0.0017 28.7 6.0 73 90-168 95-177 (228)
119 3upu_A ATP-dependent DNA helic 37.5 25 0.00084 34.9 4.1 40 5-48 126-166 (459)
120 3crv_A XPD/RAD3 related DNA he 37.0 12 0.0004 38.3 1.6 19 6-25 172-190 (551)
121 1nkt_A Preprotein translocase 35.8 54 0.0018 35.7 6.5 50 92-150 156-209 (922)
122 1wp9_A ATP-dependent RNA helic 35.7 85 0.0029 29.9 7.7 74 90-170 53-137 (494)
123 1wrb_A DJVLGB; RNA helicase, D 35.6 80 0.0027 27.8 7.0 73 90-168 101-184 (253)
124 2gxq_A Heat resistant RNA depe 35.5 1.1E+02 0.0036 25.8 7.5 73 90-168 73-154 (207)
125 2db3_A ATP-dependent RNA helic 34.5 78 0.0027 30.8 7.2 73 91-169 131-214 (434)
126 3e2i_A Thymidine kinase; Zn-bi 34.2 19 0.00063 32.4 2.3 17 5-21 99-115 (219)
127 2ipc_A Preprotein translocase 32.9 79 0.0027 34.6 7.2 52 90-150 122-177 (997)
128 2r2a_A Uncharacterized protein 32.5 15 0.0005 32.3 1.3 13 8-20 88-100 (199)
129 1xx6_A Thymidine kinase; NESG, 31.4 18 0.00062 31.5 1.7 14 7-20 81-94 (191)
130 2b8t_A Thymidine kinase; deoxy 31.4 19 0.00064 32.3 1.8 15 6-20 88-102 (223)
131 4a2p_A RIG-I, retinoic acid in 31.1 67 0.0023 31.8 6.1 76 89-171 55-143 (556)
132 2vl7_A XPD; helicase, unknown 31.0 15 0.0005 37.5 1.2 17 4-20 172-188 (540)
133 4a2q_A RIG-I, retinoic acid in 28.9 85 0.0029 33.3 6.8 75 89-170 296-383 (797)
134 3vkw_A Replicase large subunit 28.8 43 0.0015 33.3 4.1 40 7-50 234-273 (446)
135 3tbk_A RIG-I helicase domain; 28.0 63 0.0021 31.9 5.3 77 89-172 52-141 (555)
136 1w4r_A Thymidine kinase; type 27.9 22 0.00077 31.2 1.6 39 6-48 90-128 (195)
137 4a15_A XPD helicase, ATP-depen 27.0 13 0.00045 38.7 -0.1 15 7-21 204-218 (620)
138 1q0u_A Bstdead; DEAD protein, 25.4 61 0.0021 27.9 4.1 74 90-169 73-161 (219)
139 2gno_A DNA polymerase III, gam 25.4 51 0.0017 30.8 3.8 18 3-20 78-95 (305)
140 1a5t_A Delta prime, HOLB; zinc 24.1 46 0.0016 31.2 3.3 17 4-20 105-121 (334)
141 3s5j_B Ribose-phosphate pyroph 24.0 4.1E+02 0.014 25.0 9.9 109 39-155 164-279 (326)
142 2i4i_A ATP-dependent RNA helic 23.9 2.2E+02 0.0076 26.6 8.3 72 91-168 103-185 (417)
143 3tla_A MCCF; serine protease, 23.7 2.6E+02 0.009 26.8 8.6 68 85-156 38-123 (371)
144 2lnd_A De novo designed protei 23.5 2.1E+02 0.0073 21.1 6.0 16 97-112 62-77 (112)
145 1g5t_A COB(I)alamin adenosyltr 23.3 98 0.0033 27.0 4.9 45 6-52 119-168 (196)
146 2p65_A Hypothetical protein PF 22.7 29 0.00098 28.6 1.3 13 8-20 116-128 (187)
147 2gk6_A Regulator of nonsense t 22.4 40 0.0014 34.9 2.6 38 6-48 338-375 (624)
148 3rt3_C NS1, NS1B, non-structur 22.1 59 0.002 24.2 2.7 36 350-385 26-61 (109)
149 1zl0_A Hypothetical protein PA 22.1 3.1E+02 0.01 25.6 8.5 67 85-156 12-94 (311)
150 1qde_A EIF4A, translation init 22.1 1.2E+02 0.0041 25.9 5.4 72 90-168 83-165 (224)
151 2z0m_A 337AA long hypothetical 20.8 2.5E+02 0.0085 25.2 7.6 71 91-168 58-139 (337)
152 3l9o_A ATP-dependent RNA helic 20.2 1E+02 0.0034 34.4 5.4 66 90-169 228-301 (1108)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.1e-62 Score=519.98 Aligned_cols=388 Identities=41% Similarity=0.742 Sum_probs=353.2
Q ss_pred CCcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccccc
Q 015049 2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL 81 (414)
Q Consensus 2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l 81 (414)
.++.+.++++||||+|++.|.+||++|+.++.++++..+++++.+++.+.++.+....+..+.+..+.|..++......+
T Consensus 234 ~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l 313 (677)
T 3rc3_A 234 CSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHAL 313 (677)
T ss_dssp CCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCC
T ss_pred hhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHH
Confidence 45678899999999999999999999999999999889999999999999999999999999999999999988877766
Q ss_pred ccccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccE
Q 015049 82 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 161 (414)
Q Consensus 82 ~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~ 161 (414)
..+..+.+|++|||+|+++++.+++.|++.+. +++++||+|++++|..+++.|++++++++||||||++++|||+++++
T Consensus 314 ~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~-~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~ 392 (677)
T 3rc3_A 314 ESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL-ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRR 392 (677)
T ss_dssp CSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSE
T ss_pred HHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC-CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccE
Confidence 66777788998888899999999999999887 89999999999999999999999433899999999999999999999
Q ss_pred EEEccccccC----C-cccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHH
Q 015049 162 IIFSTMKKFD----G-VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 236 (414)
Q Consensus 162 VI~~~~~k~d----g-~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l 236 (414)
||+++.++|+ | ...+|++.++|+||+|||||.|.+.+.|.|+.+..++.+.+++.+....+++.++++.|+..++
T Consensus 393 VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l 472 (677)
T 3rc3_A 393 IIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI 472 (677)
T ss_dssp EEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHH
T ss_pred EEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHH
Confidence 9999999873 2 2356899999999999999999764469999999999889999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCCCCHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 015049 237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNY 316 (414)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 316 (414)
+.++..++...+.++++.+.....++..|++++++++.++++++++++|+++++|.||++|++.+++.++++|..|++.|
T Consensus 473 ~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP~~~~~~~~~~~~~~~~~~~ 552 (677)
T 3rc3_A 473 EMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQY 552 (677)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCCcchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccccccC--CCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 015049 317 SKKGIVQLREIFT--PGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390 (414)
Q Consensus 317 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~ 390 (414)
++++++++..+.. +.+...+.+..+|..||++|+++++|+|||||||++|||.+.|.++|..|+.+|++.|.++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~~~~~ 628 (677)
T 3rc3_A 553 SRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNI 628 (677)
T ss_dssp HTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCTTTSTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HcCCCCCHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988764421 2223457788899999999999999999999999999999999999999999999999985
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=5.4e-26 Score=263.21 Aligned_cols=229 Identities=20% Similarity=0.223 Sum_probs=173.3
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC------CCCcEEEEecCCChHHHHHHHHHcCCc-----eEEeeccccC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLS 72 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l------~a~~i~l~g~~~~~~~i~~l~~~~~~~-----~~v~~~~r~~ 72 (414)
+++++++|||||+|++.| +||..|+..+..+ ....+.++|.++++++.++++.|++.. +.+....|++
T Consensus 204 ~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPv 282 (1724)
T 4f92_B 204 YTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPV 282 (1724)
T ss_dssp HHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSS
T ss_pred hhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccC
Confidence 457899999999999987 6999999876543 235678899999999999999998764 4556667888
Q ss_pred CCccccc------c----------c-ccc-cccCCCCEEEEe-cHHHHHHHHHHHHHc----------------------
Q 015049 73 PLVPLNV------P----------L-GSF-SNIQTGDCIVTF-SRHAIYRLKKAIESR---------------------- 111 (414)
Q Consensus 73 pl~~~~~------~----------l-~~l-~~i~~g~~Iv~f-sr~~~~~l~~~L~~~---------------------- 111 (414)
||....- . + ..+ ....++++|||+ ||+.|+.+++.|.+.
T Consensus 283 pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1724)
T 4f92_B 283 PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 362 (1724)
T ss_dssp CEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHH
T ss_pred ccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHH
Confidence 8763110 0 0 011 122355677765 999999988887541
Q ss_pred --------------CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCc--cc
Q 015049 112 --------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--EL 175 (414)
Q Consensus 112 --------------~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~--~~ 175 (414)
...++++|||||++++|..+++.|++| .++|||||+++++|||+|..+||+.+...||+. ..
T Consensus 363 ~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G--~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~ 440 (1724)
T 4f92_B 363 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK--HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW 440 (1724)
T ss_dssp HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT--CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEE
T ss_pred hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC--CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCc
Confidence 112689999999999999999999998 999999999999999999999999999999875 35
Q ss_pred ccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHHHHhhCCCCcccccCCCCCCHHHHH
Q 015049 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 237 (414)
Q Consensus 176 ~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~ 237 (414)
.++++.+|+||+|||||.|.+ ..|.++.+ ..++...+...+... .++++.-..-..+.|.
T Consensus 441 ~~ls~~~~~Qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~~ll~~~-~pieS~l~~~l~d~L~ 501 (1724)
T 4f92_B 441 TELGALDILQMLGRAGRPQYD-TKGEGILITSHGELQYYLSLLNQQ-LPIESQMVSKLPDMLN 501 (1724)
T ss_dssp EECCHHHHHHHHTTBSCTTTC-SCEEEEEEEESTTCCHHHHHTTTC-SCCCCCTTTTHHHHHH
T ss_pred ccCCHHHHHHhhhhccCCCCC-CccEEEEEecchhHHHHHHHHcCC-CcchhhccccHHHHHH
Confidence 689999999999999999976 45655443 455666666666554 5677654433334443
No 3
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-25 Score=245.54 Aligned_cols=229 Identities=20% Similarity=0.275 Sum_probs=170.4
Q ss_pred CcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc----CCc-eEEeeccccCCCccc
Q 015049 3 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT----GDD-VKVQSYERLSPLVPL 77 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~----~~~-~~v~~~~r~~pl~~~ 77 (414)
..++++++|||||+|++.|.+||..|+.++..++. ...+++.+++.+....+..|+ +.. ..+....|++|+...
T Consensus 188 ~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~-~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~ 266 (1010)
T 2xgj_A 188 EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD-KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHY 266 (1010)
T ss_dssp TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT-TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEE
T ss_pred chhhcCCEEEEechhhhcccchhHHHHHHHHhcCC-CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEE
Confidence 34678999999999999999999999999888864 455566666666666666654 322 334444555554311
Q ss_pred cc-----c------------------------------------------------------------cccccccCCCCE
Q 015049 78 NV-----P------------------------------------------------------------LGSFSNIQTGDC 92 (414)
Q Consensus 78 ~~-----~------------------------------------------------------------l~~l~~i~~g~~ 92 (414)
.. . +..+.....+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~ 346 (1010)
T 2xgj_A 267 LFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPV 346 (1010)
T ss_dssp EEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSE
T ss_pred EEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCE
Confidence 00 0 000001112356
Q ss_pred EEEe-cHHHHHHHHHHHHHcCC--------------------------------------CeEEEecCCCCHHHHHHHHH
Q 015049 93 IVTF-SRHAIYRLKKAIESRGK--------------------------------------HLCSIVYGSLPPETRTRQAT 133 (414)
Q Consensus 93 Iv~f-sr~~~~~l~~~L~~~~~--------------------------------------~~v~~ihg~L~~e~R~~~~~ 133 (414)
|||. ||+.|+.++..|...+. .++++|||+|++++|..+++
T Consensus 347 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~ 426 (1010)
T 2xgj_A 347 IVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEI 426 (1010)
T ss_dssp EEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHH
Confidence 6644 99999999988865332 13899999999999999999
Q ss_pred HhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC--CHH
Q 015049 134 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE--DLP 211 (414)
Q Consensus 134 ~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~--d~~ 211 (414)
.|++| .++|||||+++++|||+|...||+.+.++||+...+|+++.+|.||+|||||.|.+ ..|.|+.+... +..
T Consensus 427 ~F~~G--~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d-~~G~vi~l~~~~~e~~ 503 (1010)
T 2xgj_A 427 LFQEG--FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD-DRGIVIMMIDEKMEPQ 503 (1010)
T ss_dssp HHHTT--CCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC-SSEEEEEEECSCCCHH
T ss_pred HHhcC--CCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC-CceEEEEEECCCCCHH
Confidence 99998 99999999999999999988999999999999989999999999999999999975 56888776543 556
Q ss_pred HHHHhhCCCCcccccCCCCCCHHHH
Q 015049 212 LLHKSLLEPSPMLESAGLFPNFDLI 236 (414)
Q Consensus 212 ~l~~~l~~~~~~i~~~~i~p~~~~l 236 (414)
.+++++.+...++.+. +.++...+
T Consensus 504 ~~~~l~~~~~~~l~s~-f~~~~~~i 527 (1010)
T 2xgj_A 504 VAKGMVKGQADRLDSA-FHLGYNMI 527 (1010)
T ss_dssp HHHHHHSCCCCCCCCC-CCCCHHHH
T ss_pred HHHHHHhCCCcccccc-cCCcHHHH
Confidence 7888888888877543 33444433
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=6e-25 Score=237.32 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=166.2
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccc------
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL------ 77 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~------ 77 (414)
++++++++||||+|++.+.+||..+..++..++. ...+++.+++.+..+.+..+++... +....|+.|+...
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~-~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~rp~~l~~~~~~~~~ 212 (720)
T 2zj8_A 135 WIKDVKILVADEIHLIGSRDRGATLEVILAHMLG-KAQIIGLSATIGNPEELAEWLNAEL-IVSDWRPVKLRRGVFYQGF 212 (720)
T ss_dssp TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-TBEEEEEECCCSCHHHHHHHTTEEE-EECCCCSSEEEEEEEETTE
T ss_pred hhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc-CCeEEEEcCCcCCHHHHHHHhCCcc-cCCCCCCCcceEEEEeCCe
Confidence 4678999999999999998999999988876654 6777787777776788888876543 3333344444310
Q ss_pred -----------ccccccccc-c-CCCCEEEEe-cHHHHHHHHHHHHHcCC------------------------------
Q 015049 78 -----------NVPLGSFSN-I-QTGDCIVTF-SRHAIYRLKKAIESRGK------------------------------ 113 (414)
Q Consensus 78 -----------~~~l~~l~~-i-~~g~~Iv~f-sr~~~~~l~~~L~~~~~------------------------------ 113 (414)
......+.. + ..+++|||+ ||+.++.++..|.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 292 (720)
T 2zj8_A 213 VTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292 (720)
T ss_dssp EEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH
T ss_pred eeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH
Confidence 000011111 1 246777766 99999999998875311
Q ss_pred --CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccC
Q 015049 114 --HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 191 (414)
Q Consensus 114 --~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAG 191 (414)
.++++|||+|++++|..+++.|++| .++|||||+++++|+|+|..+||+.+...||+.+..|.+..+|.||+||||
T Consensus 293 ~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 293 IRGGVAFHHAGLGRDERVLVEENFRKG--IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAG 370 (720)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTT--SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBC
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHCC--CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcC
Confidence 1499999999999999999999998 999999999999999999777888888888876677899999999999999
Q ss_pred CCCCCCCceEEEEecCC-CHH-HHHHhhCCCCcccccC
Q 015049 192 RYGSKFPVGEVTCLDSE-DLP-LLHKSLLEPSPMLESA 227 (414)
Q Consensus 192 R~g~~~~~G~v~~~~~~-d~~-~l~~~l~~~~~~i~~~ 227 (414)
|.|.+ ..|.++.+... +.. .+++++...++++.+.
T Consensus 371 R~g~~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 371 RPKYD-EVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp CTTTC-SEEEEEEECSSSCHHHHHHHHTTSCCCCCCCC
T ss_pred CCCCC-CCceEEEEecCccHHHHHHHHhcCCCCCcEee
Confidence 99975 56887776543 433 3456777777777654
No 5
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=4.4e-25 Score=245.19 Aligned_cols=226 Identities=22% Similarity=0.304 Sum_probs=170.8
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC-----CceEEeeccccCCCcccc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG-----DDVKVQSYERLSPLVPLN 78 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~-----~~~~v~~~~r~~pl~~~~ 78 (414)
.+++++++||||||++.|.++|..|...+..++. .+.+++.+++.+....+..|.+ ....+....|+.|+....
T Consensus 144 ~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~-~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v 222 (997)
T 4a4z_A 144 LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ-HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINI 222 (997)
T ss_dssp GGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCT-TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEE
T ss_pred hhcCCCEEEEECcccccccchHHHHHHHHHhccc-CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEE
Confidence 4578999999999999999999999999988875 4555555555555556666653 223445555665554210
Q ss_pred c-------------------------------------------------------------------------------
Q 015049 79 V------------------------------------------------------------------------------- 79 (414)
Q Consensus 79 ~------------------------------------------------------------------------------- 79 (414)
.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~ 302 (997)
T 4a4z_A 223 WAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRG 302 (997)
T ss_dssp EETTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------------------
T ss_pred ecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred ------------------------ccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCC--------------------
Q 015049 80 ------------------------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKH-------------------- 114 (414)
Q Consensus 80 ------------------------~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~-------------------- 114 (414)
.+..+.....+.+|||+ ||+.|+.++..|.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 382 (997)
T 4a4z_A 303 AGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLK 382 (997)
T ss_dssp --------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred cccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 00001111234566655 999999999988654331
Q ss_pred ------------------eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccc
Q 015049 115 ------------------LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 176 (414)
Q Consensus 115 ------------------~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~ 176 (414)
++++|||+|++.+|..+++.|++| .++|||||++++||||+|-+.||+.+.++|||....
T Consensus 383 ~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G--~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~ 460 (997)
T 4a4z_A 383 KEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG--FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLR 460 (997)
T ss_dssp HHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--CCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEE
T ss_pred hhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC--CCcEEEEchHhhCCCCCCCceEEEeccccccCccCC
Confidence 589999999999999999999998 899999999999999999999999999999999999
Q ss_pred cCCHHHHHhhhcccCCCCCCCCceEEEEecC---CCHHHHHHhhCCCCcccccCCCCCCHH
Q 015049 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS---EDLPLLHKSLLEPSPMLESAGLFPNFD 234 (414)
Q Consensus 177 ~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~---~d~~~l~~~l~~~~~~i~~~~i~p~~~ 234 (414)
|+++.+|.||+|||||.|.+ +.|.|+.+.. .+...+++.+.+.+.++.+. +.++..
T Consensus 461 ~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~-~~~~yn 519 (997)
T 4a4z_A 461 ELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQ-FRLTYN 519 (997)
T ss_dssp ECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCC-CCCCHH
T ss_pred CCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHHhcCCCcccccc-cccchH
Confidence 99999999999999999976 6798887763 25567788877777766543 334443
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=7.8e-25 Score=253.53 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=169.5
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCC------CCCcEEEEecCCChHHHHHHHHHcCCc----eEEeeccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD----VKVQSYERLSP 73 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l------~a~~i~l~g~~~~~~~i~~l~~~~~~~----~~v~~~~r~~p 73 (414)
++++++++||||+|+++| +||..|+..+..+ ....+.++|.++++++.+++++|++.. +.+....|++|
T Consensus 1043 ~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvp 1121 (1724)
T 4f92_B 1043 NVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP 1121 (1724)
T ss_dssp HHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSC
T ss_pred ccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCC
Confidence 356899999999999987 6999998877544 235678889999999999999998754 45667788888
Q ss_pred Ccccccc----------------c-ccccc-cCCCCEEEEe-cHHHHHHHHHHHHHc-----------------------
Q 015049 74 LVPLNVP----------------L-GSFSN-IQTGDCIVTF-SRHAIYRLKKAIESR----------------------- 111 (414)
Q Consensus 74 l~~~~~~----------------l-~~l~~-i~~g~~Iv~f-sr~~~~~l~~~L~~~----------------------- 111 (414)
+...... + ..+.. ...+.+|||+ ||+.|+.++..|...
T Consensus 1122 L~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1122 LELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp EEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred eEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 8632110 0 00111 1244566655 999999888766430
Q ss_pred ----------CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcc--cccCC
Q 015049 112 ----------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLT 179 (414)
Q Consensus 112 ----------~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~--~~~ls 179 (414)
...++++|||||++++|..+++.|++| .++|||||+++++|||+|..+||+.+..+|||.. ..+++
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G--~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s 1279 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSG--AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP 1279 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHT--SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECC
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCC--CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCC
Confidence 012699999999999999999999998 9999999999999999999999999999999864 45789
Q ss_pred HHHHHhhhcccCCCCCCCCceEEEEecCC-CHHHHHHhhCCCCcccccCC
Q 015049 180 VPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSPMLESAG 228 (414)
Q Consensus 180 ~~~~~QraGRAGR~g~~~~~G~v~~~~~~-d~~~l~~~l~~~~~~i~~~~ 228 (414)
+.+|+||+|||||.|.+ +.|.++.+... +...+++.+. .+.++++.-
T Consensus 1280 ~~~~~Qm~GRAGR~g~d-~~G~avll~~~~~~~~~~~ll~-~~~pveS~L 1327 (1724)
T 4f92_B 1280 IYDVLQMVGHANRPLQD-DEGRCVIMCQGSKKDFFKKFLY-EPLPVESHL 1327 (1724)
T ss_dssp HHHHHHHHTTBCCTTTC-SCEEEEEEEEGGGHHHHHHHTT-SCBCCCCCG
T ss_pred HHHHHHhhccccCCCCC-CceEEEEEecchHHHHHHHHhC-CCCceeeec
Confidence 99999999999999987 67887766544 4455565554 456676543
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.1e-24 Score=235.02 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=156.2
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccc------
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL------ 77 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~------ 77 (414)
++++++++||||+|++.|..||..++.++..++ ...+++.+++.+..+.+..+++... +....|+.|+...
T Consensus 142 ~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~ 218 (715)
T 2va8_A 142 WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK--RRNLLALSATISNYKQIAKWLGAEP-VATNWRPVPLIEGVIYPER 218 (715)
T ss_dssp GGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH--TSEEEEEESCCTTHHHHHHHHTCEE-EECCCCSSCEEEEEEEECS
T ss_pred HhhccCEEEEechhhcCCcccchHHHHHHHhcc--cCcEEEEcCCCCCHHHHHHHhCCCc-cCCCCCCCCceEEEEecCC
Confidence 367899999999999998899999998876665 5667777777766788888887543 3333444444310
Q ss_pred ----------c---------c-cccccc-cc-CCCCEEEEe-cHHHHHHHHHHHHHcCC---------------------
Q 015049 78 ----------N---------V-PLGSFS-NI-QTGDCIVTF-SRHAIYRLKKAIESRGK--------------------- 113 (414)
Q Consensus 78 ----------~---------~-~l~~l~-~i-~~g~~Iv~f-sr~~~~~l~~~L~~~~~--------------------- 113 (414)
. . .+..+. .+ ..+++|||+ ||++++.++..|.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 0 0 000011 11 356777777 99999999999986432
Q ss_pred --------------CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccC---Ccccc
Q 015049 114 --------------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD---GVELR 176 (414)
Q Consensus 114 --------------~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~d---g~~~~ 176 (414)
.++++|||+|++++|..+++.|++| .++|||||+++++|||+|..+||+.+...|| |....
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g--~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~ 376 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR--KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYD 376 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--CSCEEEECGGGGGSSCCCBSEEEECCC------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC--CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCC
Confidence 1589999999999999999999998 9999999999999999997777777777788 44467
Q ss_pred cCCHHHHHhhhcccCCCCCCCCceEEEEecCCCH---HHHHHhhCCCCcccccC
Q 015049 177 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL---PLLHKSLLEPSPMLESA 227 (414)
Q Consensus 177 ~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~---~~l~~~l~~~~~~i~~~ 227 (414)
|.+..+|.||+|||||.|.+ ..|.++.+...+. ..+++.+...++++.+.
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~ 429 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFD-QIGESIVVVRDKEDVDRVFKKYVLSDVEPIESK 429 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTC-SCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCS
T ss_pred cCCHHHHHHHhhhcCCCCCC-CCceEEEEeCCchHHHHHHHHHHcCCCCCceec
Confidence 88999999999999999975 5688887765432 24556777777776644
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.92 E-value=1.4e-24 Score=233.87 Aligned_cols=219 Identities=23% Similarity=0.333 Sum_probs=163.8
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCC--CCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc--c
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN--V 79 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~--a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~--~ 79 (414)
++++++++||||+|++.+.+||..+..++..+. .....+++.+++.+..+.+..+++... +....|+.|+.... .
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~r~~~l~~~~~~~ 213 (702)
T 2p6r_A 135 WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADY-YVSDWRPVPLVEGVLCE 213 (702)
T ss_dssp GGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEE-EECCCCSSCEEEEEECS
T ss_pred HHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCc-ccCCCCCccceEEEeeC
Confidence 467899999999999999899999988765553 235677777777777889999987543 33444555554210 0
Q ss_pred -----------------cccccc-cc-CCCCEEEEe-cHHHHHHHHHHHHHcC---------------------------
Q 015049 80 -----------------PLGSFS-NI-QTGDCIVTF-SRHAIYRLKKAIESRG--------------------------- 112 (414)
Q Consensus 80 -----------------~l~~l~-~i-~~g~~Iv~f-sr~~~~~l~~~L~~~~--------------------------- 112 (414)
....+. .+ ..+++|||+ ||++++.++..|.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 214 GTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE 293 (702)
T ss_dssp SEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHH
T ss_pred CeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHH
Confidence 000000 01 356777776 9999999999887531
Q ss_pred --CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhccc
Q 015049 113 --KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 190 (414)
Q Consensus 113 --~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRA 190 (414)
..++++|||+|++++|..+++.|++| .++|||||+++++|||+|..+||+.+...|||. ..|.+..+|.||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~-~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRG--NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY-SKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTT--SCCEEEECSTTTSSSCCCBSEEEECCSEEESSS-EEECCHHHHHHHHTTB
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCC--CCeEEEECcHHhccCCCCceEEEEcCceeeCCC-CCcCCHHHHHHHhhhc
Confidence 02588999999999999999999998 999999999999999999778888878888854 5788999999999999
Q ss_pred CCCCCCCCceEEEEecCC-CHHH-HHHhhCCCCcccccC
Q 015049 191 GRYGSKFPVGEVTCLDSE-DLPL-LHKSLLEPSPMLESA 227 (414)
Q Consensus 191 GR~g~~~~~G~v~~~~~~-d~~~-l~~~l~~~~~~i~~~ 227 (414)
||.|.+ ..|.++.+... +... +++.+...++++.+.
T Consensus 371 GR~g~~-~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~ 408 (702)
T 2p6r_A 371 GRPGMD-ERGEAIIIVGKRDREIAVKRYIFGEPERITSK 408 (702)
T ss_dssp SCTTTC-SCEEEEEECCGGGHHHHHHTTTSSCCCCCCCC
T ss_pred CCCCCC-CCceEEEEecCccHHHHHHHHhcCCCCCceee
Confidence 999975 56888777554 3333 345666677666543
No 9
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.91 E-value=4.4e-24 Score=222.57 Aligned_cols=197 Identities=19% Similarity=0.276 Sum_probs=142.4
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHH-------hCCCCCcEEEEecCCChHHHHHHHHHcCC--c-eEEeeccccCCC-
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRAL-------LGICANELHLCGDPAAVPLIQQILQVTGD--D-VKVQSYERLSPL- 74 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l-------~~l~a~~i~l~g~~~~~~~i~~l~~~~~~--~-~~v~~~~r~~pl- 74 (414)
.+++++||||||+++ +||..+...+ ...+...+..+.++.+....+++..+.+. . ..+....|+...
T Consensus 138 ~~~~~vViDEaH~i~--~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~ 215 (523)
T 1oyw_A 138 WNPVLLAVDEAHCIS--QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRY 215 (523)
T ss_dssp SCEEEEEESSGGGGC--TTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEE
T ss_pred CCCCEEEEeCccccC--cCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEE
Confidence 578999999999997 5665543332 22344455555555555555667766542 2 333333333210
Q ss_pred ccc------ccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 75 VPL------NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 75 ~~~------~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
.+. ...+..+.....+.+|||+ ||+.++.+++.|.+.+. .+..+||+|++++|..+++.|++| +++||||
T Consensus 216 ~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~-~~~~~h~~l~~~~R~~~~~~f~~g--~~~vlVa 292 (523)
T 1oyw_A 216 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI-SAAAYHAGLENNVRADVQEKFQRD--DLQIVVA 292 (523)
T ss_dssp EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--SCSEEEE
T ss_pred EEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHcC--CCeEEEE
Confidence 000 0111122233345677766 99999999999999987 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE-ecCCCHHHHHHhhCC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LDSEDLPLLHKSLLE 219 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~-~~~~d~~~l~~~l~~ 219 (414)
|++++||||+| ++.||+++.|+ +.++|+||+|||||.|.. |.++. +.+.|...++..+..
T Consensus 293 T~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Qr~GRaGR~g~~---~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 293 TVAFGMGINKPNVRFVVHFDIPR---------NIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CTTSCTTTCCTTCCEEEESSCCS---------SHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHHHT
T ss_pred echhhCCCCccCccEEEEECCCC---------CHHHHHHHhccccCCCCC---ceEEEEeCHHHHHHHHHHHhc
Confidence 99999999996 99999999998 999999999999999975 65554 556676667766654
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.91 E-value=2.6e-23 Score=211.77 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=137.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCC--CCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccC---CCcc--
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS---PLVP-- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l--~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~---pl~~-- 76 (414)
+.+++++||||||++.|..++..+..++..+ +.....++.+++..+.++.++... .+...+....... .+..
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 5789999999999999888888888887664 333444444555555566666543 3333332211100 0000
Q ss_pred --c------ccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 --L------NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 --~------~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ...+..+... .+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+||||
T Consensus 281 ~~~~~~~k~~~l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLva 356 (434)
T 2db3_A 281 YEVNKYAKRSKLIEILSEQ-ADGTIVFVETKRGADFLASFLSEKEF-PTTSIHGDRLQSQREQALRDFKNG--SMKVLIA 356 (434)
T ss_dssp EECCGGGHHHHHHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHTTC-CEEEESTTSCHHHHHHHHHHHHTS--SCSEEEE
T ss_pred EEeCcHHHHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEE
Confidence 0 0001112222 23366666 99999999999999987 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
||++++|+|+| ++.||+++.|. +..+|+||+|||||.|.. |.++.+.
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~---------~~~~y~qriGR~gR~g~~---G~a~~~~ 404 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPS---------KIDDYVHRIGRTGRVGNN---GRATSFF 404 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCS---------SHHHHHHHHTTSSCTTCC---EEEEEEE
T ss_pred chhhhCCCCcccCCEEEEECCCC---------CHHHHHHHhcccccCCCC---CEEEEEE
Confidence 99999999996 99999999987 999999999999999976 7766654
No 11
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-24 Score=242.25 Aligned_cols=227 Identities=20% Similarity=0.258 Sum_probs=162.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc----CCc-eEEeeccccCCCccccc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT----GDD-VKVQSYERLSPLVPLNV 79 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~----~~~-~~v~~~~r~~pl~~~~~ 79 (414)
++++++|||||||.+.|.+||..|...+..++. .+.+++.+++.+....+..+. +.. ..+....|+.|+.....
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~-~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 366 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLPD-KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT-TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEE
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcCC-CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEe
Confidence 567899999999999999999999999887764 344444444454434444442 222 33444555555432100
Q ss_pred -----------------------------------------------------------------ccccccccCCCCEEE
Q 015049 80 -----------------------------------------------------------------PLGSFSNIQTGDCIV 94 (414)
Q Consensus 80 -----------------------------------------------------------------~l~~l~~i~~g~~Iv 94 (414)
.+..+.....+.+||
T Consensus 367 ~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIV 446 (1108)
T 3l9o_A 367 PAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIV 446 (1108)
T ss_dssp ETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEE
T ss_pred ecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEE
Confidence 000001112345666
Q ss_pred Ee-cHHHHHHHHHHHHHcCCC--------------------------------------eEEEecCCCCHHHHHHHHHHh
Q 015049 95 TF-SRHAIYRLKKAIESRGKH--------------------------------------LCSIVYGSLPPETRTRQATRF 135 (414)
Q Consensus 95 ~f-sr~~~~~l~~~L~~~~~~--------------------------------------~v~~ihg~L~~e~R~~~~~~F 135 (414)
|+ |++.|+.++..|...+.. ++++|||+|++..|..+++.|
T Consensus 447 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F 526 (1108)
T 3l9o_A 447 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 526 (1108)
T ss_dssp EESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence 54 999999999887542210 289999999999999999999
Q ss_pred hCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC--CHHHH
Q 015049 136 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE--DLPLL 213 (414)
Q Consensus 136 ~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~--d~~~l 213 (414)
++| .++|||||+++++|||+|...+|+....+|++...+++++.+|+||+|||||.|.+ +.|.++.+... +...+
T Consensus 527 ~~G--~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d-~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 527 QEG--FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD-DRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp HHT--CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSC-SSEEEEEEECCCCCHHHH
T ss_pred hCC--CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCcCHHHH
Confidence 998 99999999999999999966667777788999999999999999999999999975 56888877543 45677
Q ss_pred HHhhCCCCcccccCCCCCCHHHH
Q 015049 214 HKSLLEPSPMLESAGLFPNFDLI 236 (414)
Q Consensus 214 ~~~l~~~~~~i~~~~i~p~~~~l 236 (414)
++++.+...++.+.. .++...+
T Consensus 604 ~~l~~~~~~~L~S~f-~~~y~~i 625 (1108)
T 3l9o_A 604 KGMVKGQADRLDSAF-HLGYNMI 625 (1108)
T ss_dssp HHHHHCCCCCCCCCC-CCCHHHH
T ss_pred HHHhcCCCccccccc-CCcHHHH
Confidence 888888888776543 3344433
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.90 E-value=1.5e-22 Score=213.62 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=151.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHH-------hCCCCCcEEEEecCCChHHHHHHHHHcCCc--eEE-eeccccCCC
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRAL-------LGICANELHLCGDPAAVPLIQQILQVTGDD--VKV-QSYERLSPL 74 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l-------~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~--~~v-~~~~r~~pl 74 (414)
+.+++++||||||+++ ++|+.+...+ ...+...+.++.++.+....+.+...++.. ..+ ....|+. +
T Consensus 163 ~~~i~~iViDEAH~is--~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n-l 239 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCS--QWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN-L 239 (591)
T ss_dssp TTCEEEEEEETGGGGS--TTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT-E
T ss_pred ccCCcEEEEECccccc--ccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc-c
Confidence 3578999999999998 5664433222 223334445455555544445566655432 222 2222221 1
Q ss_pred cc--c----------cccccccccc-CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCC
Q 015049 75 VP--L----------NVPLGSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 140 (414)
Q Consensus 75 ~~--~----------~~~l~~l~~i-~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~ 140 (414)
.+ . ...+..+... ..+.+|||+ |++.++.+++.|.+.|. .+..+||+|++++|..+++.|++|
T Consensus 240 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~-~~~~~h~~l~~~~R~~~~~~F~~g-- 316 (591)
T 2v1x_A 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI-HAGAYHANLEPEDKTTVHRKWSAN-- 316 (591)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHcC--
Confidence 11 0 0011112222 234456655 99999999999999987 899999999999999999999998
Q ss_pred cccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE-ecCCCHHHHHHhhC
Q 015049 141 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LDSEDLPLLHKSLL 218 (414)
Q Consensus 141 ~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~-~~~~d~~~l~~~l~ 218 (414)
+++|||||++++||||+| |+.||+++.|+ +.++|+||+|||||.|.. |.++. +.+.|...++..+.
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~---------s~~~y~Qr~GRaGR~G~~---g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSK---------SMENYYQESGRAGRDDMK---ADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCS---------SHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHTT
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCC---------CHHHHHHHhccCCcCCCC---ceEEEEEChHHHHHHHHHHh
Confidence 899999999999999997 99999999998 999999999999999975 66554 45567777777665
Q ss_pred CCCcccccCCCCCCHHHHHHHHhcCCCchHHHHHHHHHH
Q 015049 219 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 257 (414)
Q Consensus 219 ~~~~~i~~~~i~p~~~~l~~~~~~~~~~~l~~~l~~~~~ 257 (414)
.+.... .....+..++.......-..++..|.+
T Consensus 385 ~~~~~~------~~l~~~~~~~~~~~~Crr~~ll~~f~e 417 (591)
T 2v1x_A 385 MENVGQ------QKLYEMVSYCQNISKCRRVLMAQHFDE 417 (591)
T ss_dssp TSTTHH------HHHHHHHHHHTCSSSCHHHHHHHHHTC
T ss_pred hhhhhH------HHHHHHHHHHhcccccHHHHHHHHcCC
Confidence 421110 112233344433344444556666644
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.90 E-value=1.1e-22 Score=203.34 Aligned_cols=204 Identities=19% Similarity=0.218 Sum_probs=144.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCc-EEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcc------c
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------L 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~-i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~------~ 77 (414)
+.+++++||||+|.+.+..++..+..++..++... +.+++++.+....+.+....+....+........-.. .
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEEC
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEe
Confidence 57799999999999987777777777776665433 3334444333333444445555554433322211100 0
Q ss_pred c-----ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 78 N-----VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 78 ~-----~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
. ..+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+|||||++
T Consensus 241 ~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~ 317 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY-SCYYSHARMKQQERNKVFHEFRQG--KVRTLVCSDL 317 (400)
T ss_dssp CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHTT--SSSEEEESSC
T ss_pred chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCc
Confidence 0 001 112223455677766 99999999999999887 899999999999999999999998 8999999999
Q ss_pred ccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHH---HHHhhCCCCcc
Q 015049 151 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPL---LHKSLLEPSPM 223 (414)
Q Consensus 151 l~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~---l~~~l~~~~~~ 223 (414)
+++|+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++.+ .+.|... +.+.+..+..+
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~---------s~~~~~Qr~GR~gR~g~~---g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 383 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPK---------TAETYLHRIGRSGRFGHL---GLAINLINWNDRFNLYKIEQELGTEIAA 383 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCS---------SHHHHHHHHCBSSCTTCC---EEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred cccCCCccCCCEEEEeCCCC---------CHHHHHHhcchhcCCCCC---ceEEEEeccchHHHHHHHHHHhCCCccc
Confidence 99999996 89999999887 999999999999999976 776655 4445444 34444444443
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=3.2e-22 Score=196.68 Aligned_cols=201 Identities=14% Similarity=0.184 Sum_probs=139.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHH-HHHcCCceEEeeccccCCCccc------
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQI-LQVTGDDVKVQSYERLSPLVPL------ 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l-~~~~~~~~~v~~~~r~~pl~~~------ 77 (414)
+.+++++||||+|.+.+..+...+...+..++.....+..++++.+..... ....++...+..... ..+...
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 223 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNE 223 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCG
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeCh
Confidence 578999999999999877666677777766654333333333443333333 334444333322111 111100
Q ss_pred cc---ccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc
Q 015049 78 NV---PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 153 (414)
Q Consensus 78 ~~---~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~ 153 (414)
.. .+..+-.-..+.+|||+ |++.++.+++.|.+.+. ++..+||++++++|..+++.|++| +.+|||||+++++
T Consensus 224 ~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~~~~ 300 (367)
T 1hv8_A 224 NERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-KAGAIHGDLSQSQREKVIRLFKQK--KIRILIATDVMSR 300 (367)
T ss_dssp GGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-CEEEECSSSCHHHHHHHHHHHHTT--SSSEEEECTTHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHcC--CCeEEEECChhhc
Confidence 00 01111112345566666 99999999999999887 899999999999999999999998 8999999999999
Q ss_pred cccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE-ecCCCHHH---HHHhhCCCC
Q 015049 154 GLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LDSEDLPL---LHKSLLEPS 221 (414)
Q Consensus 154 Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~-~~~~d~~~---l~~~l~~~~ 221 (414)
|+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++. +.+.+... +.+.+....
T Consensus 301 Gid~~~~~~Vi~~~~~~---------s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQ---------NPESYMHRIGRTGRAGKK---GKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp HCCCSCCSEEEESSCCS---------CHHHHHHHSTTTCCSSSC---CEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred CCCcccCCEEEEecCCC---------CHHHhhhcccccccCCCc---cEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99996 99999999887 999999999999999976 54443 34556543 444444443
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=207.06 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=130.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEEeeccccCCCccc------
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLSPLVPL------ 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v~~~~r~~pl~~~------ 77 (414)
..+++++||||+|++.+..++..+...+..++.....+..+++..+....+... .++...+.......+....
T Consensus 181 ~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 181 PKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp STTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred cccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 466899999999999877788888888877765443344444444444444443 3333333322211111100
Q ss_pred ----c---ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 78 ----N---VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 78 ----~---~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
. ..+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+|||||
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T 337 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF-TVSAMHGDMDQKERDVIMREFRSG--SSRVLITT 337 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTC-CCEEC---CHHHHHHHHHHHHSCC-----CEEEC
T ss_pred eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHHHHcC--CCcEEEEC
Confidence 0 000 112333456677766 99999999999998887 899999999999999999999998 89999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec-CCCHH---HHHHhhCCCCc
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP---LLHKSLLEPSP 222 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~-~~d~~---~l~~~l~~~~~ 222 (414)
+++++|+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++.+. +.+.. .+.+.+....+
T Consensus 338 ~~~~~Gidip~v~~Vi~~~~p~---------s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (414)
T 3eiq_A 338 DLLARGIDVQQVSLVINYDLPT---------NRENYIHRIGRGGRFGRK---GVAINMVTEEDKRTLRDIETFYNTSIE 404 (414)
T ss_dssp SSCC--CCGGGCSCEEESSCCS---------STHHHHHHSCCC----------CEEEEECSTHHHHHHHHHHHTTCCCE
T ss_pred CccccCCCccCCCEEEEeCCCC---------CHHHhhhhcCcccCCCCC---ceEEEEEcHHHHHHHHHHHHHHcCCcc
Confidence 9999999996 99999999887 999999999999999976 6655543 34443 33444454443
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.89 E-value=1.3e-22 Score=203.56 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=143.1
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH-HcCCceEEeeccccCCCcccc-----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLSPLVPLN----- 78 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~-~~~~~~~v~~~~r~~pl~~~~----- 78 (414)
..+++++||||+|.+.+..++..+...+..++.....++.+++..+.+..+.. ..++...+.............
T Consensus 177 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (410)
T 2j0s_A 177 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 256 (410)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEE
T ss_pred HhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEE
Confidence 46789999999999987777777777776665443333333343333343333 233333332221111111000
Q ss_pred --------ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 79 --------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 79 --------~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
..+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+|||||
T Consensus 257 ~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlv~T 333 (410)
T 2j0s_A 257 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMPQKERESIMKEFRSG--ASRVLIST 333 (410)
T ss_dssp ESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHHT--SSCEEEEC
T ss_pred eCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC-ceEEeeCCCCHHHHHHHHHHHHCC--CCCEEEEC
Confidence 000 111223345677766 99999999999999887 899999999999999999999998 89999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHH---HHHHhhCCCCcc
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLP---LLHKSLLEPSPM 223 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~---~l~~~l~~~~~~ 223 (414)
+++++|+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++.+ .+.+.. .+.+.+....++
T Consensus 334 ~~~~~Gidi~~v~~Vi~~~~p~---------s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 334 DVWARGLDVPQVSLIINYDLPN---------NRELYIHRIGRSGRYGRK---GVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp GGGSSSCCCTTEEEEEESSCCS---------SHHHHHHHHTTSSGGGCC---EEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred ChhhCcCCcccCCEEEEECCCC---------CHHHHHHhcccccCCCCc---eEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 9999999996 99999999887 999999999999999976 776655 444544 345555555443
Q ss_pred c
Q 015049 224 L 224 (414)
Q Consensus 224 i 224 (414)
+
T Consensus 402 ~ 402 (410)
T 2j0s_A 402 M 402 (410)
T ss_dssp C
T ss_pred c
Confidence 3
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.89 E-value=1.1e-22 Score=213.27 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=147.5
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC-------CcEEEEecCCChHHHHHHHHHc-CCce--EEeeccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-------NELHLCGDPAAVPLIQQILQVT-GDDV--KVQSYERLSP 73 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-------~~i~l~g~~~~~~~i~~l~~~~-~~~~--~v~~~~r~~p 73 (414)
.+++++++||||||++.+..++..+..++..++. ....++.+++..+.++.+.... +... .+.......+
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 3577999999999999988888887777544321 1223333444444455555543 2222 2211111111
Q ss_pred --Ccc-------ccc-------ccc----cccc-cCCCCEEEEe-cHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHH
Q 015049 74 --LVP-------LNV-------PLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESR---GKHLCSIVYGSLPPETR 128 (414)
Q Consensus 74 --l~~-------~~~-------~l~----~l~~-i~~g~~Iv~f-sr~~~~~l~~~L~~~---~~~~v~~ihg~L~~e~R 128 (414)
... ... .+. .+.. ...+.+|||+ |++.++.++..|.+. +. .+..+||++++++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~-~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 303 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL-PILEFHGKITQNKR 381 (563)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTS-CEEEESTTSCHHHH
T ss_pred cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCc-eEEEecCCCCHHHH
Confidence 100 000 000 1111 2244566666 999999999999876 55 89999999999999
Q ss_pred HHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE-ec
Q 015049 129 TRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LD 206 (414)
Q Consensus 129 ~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~-~~ 206 (414)
..+++.|++| +.+|||||+++++|||+| ++.||+++.|. ++.+|+||+|||||.|.. |.++. +.
T Consensus 382 ~~~~~~f~~g--~~~vLvaT~~~~~GiDip~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~~---g~~i~~~~ 447 (563)
T 3i5x_A 382 TSLVKRFKKD--ESGILVCTDVGARGMDFPNVHEVLQIGVPS---------ELANYIHRIGRTARSGKE---GSSVLFIC 447 (563)
T ss_dssp HHHHHHHHHC--SSEEEEECGGGTSSCCCTTCCEEEEESCCS---------STTHHHHHHTTSSCTTCC---EEEEEEEE
T ss_pred HHHHHHHhcC--CCCEEEEcchhhcCCCcccCCEEEEECCCC---------chhhhhhhcCccccCCCC---ceEEEEEc
Confidence 9999999998 899999999999999998 99999999988 999999999999999976 65543 34
Q ss_pred CCCHHHHHHhh---CCCCcccccCCCCCCHHHHHHHHhcC
Q 015049 207 SEDLPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLH 243 (414)
Q Consensus 207 ~~d~~~l~~~l---~~~~~~i~~~~i~p~~~~l~~~~~~~ 243 (414)
+.+...++... ..+..... ...|..+.+..+...+
T Consensus 448 ~~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 485 (563)
T 3i5x_A 448 KDELPFVRELEDAKNIVIAKQE--KYEPSEEIKSEVLEAV 485 (563)
T ss_dssp GGGHHHHHHHHHHHCCCCCEEE--EECCCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhCCCccccc--ccCccHHHHHHHHHHH
Confidence 55665555443 33332222 1245555555554444
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.89 E-value=1.7e-22 Score=202.22 Aligned_cols=210 Identities=15% Similarity=0.180 Sum_probs=138.1
Q ss_pred CCcCEEEEecccccCCC-CcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEEeeccccCCCcccc-----
Q 015049 6 SDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLSPLVPLN----- 78 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~-~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v~~~~r~~pl~~~~----- 78 (414)
.+++++||||+|++.+. .+...+...+..++.....++.+++..+....+... .++...+.............
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 246 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEE
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEE
Confidence 67999999999998763 333344444444443333333333333444444443 33333332221111111000
Q ss_pred -----cc---c-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 79 -----VP---L-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 79 -----~~---l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
.. + ..+.....+.+|||+ |++.++.++..|.+.+. .+..+||++++++|..+++.|++| +.+|||||
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T 323 (412)
T 3fht_A 247 CSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFREG--KEKVLVTT 323 (412)
T ss_dssp CSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHTT--SCSEEEEC
T ss_pred cCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHHHHHCC--CCcEEEEc
Confidence 00 0 111223456677766 99999999999999887 899999999999999999999998 89999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC-C-H---HHHHHhhCCCCc
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-D-L---PLLHKSLLEPSP 222 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~-d-~---~~l~~~l~~~~~ 222 (414)
+++++|+|+| ++.||+++.|..... ..+..+|+||+|||||.|.. |.++.+... + . ..+.+.+.....
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~---~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDG---NPDNETYLHRIGRTGRFGKR---GLAVNMVDSKHSMNILNRIQEHFNKKIE 397 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSS---SBCHHHHHHHHTTSSCTTCC---EEEEEEECSHHHHHHHHHHHHHHTCCCE
T ss_pred CccccCCCccCCCEEEEECCCCCCCC---CcchheeecccCcccCCCCC---ceEEEEEcChhhHHHHHHHHHHHCCccc
Confidence 9999999996 999999998852211 13889999999999999976 776655442 2 2 344555555544
Q ss_pred cc
Q 015049 223 ML 224 (414)
Q Consensus 223 ~i 224 (414)
++
T Consensus 398 ~~ 399 (412)
T 3fht_A 398 RL 399 (412)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 19
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.89 E-value=2.6e-22 Score=199.27 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=135.1
Q ss_pred CCCcCEEEEecccccCC-CCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccCCCcccc----
Q 015049 5 VSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLSPLVPLN---- 78 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d-~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~pl~~~~---- 78 (414)
+.+++++||||+|.+.+ ...+..+......++.....+..+++..+.+..+.... +....+.......+.....
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEE
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEE
Confidence 56899999999999875 34444455555555543333333444444455555543 3333332221111111000
Q ss_pred ---------ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 79 ---------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 79 ---------~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
..+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+||||
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~ 299 (395)
T 3pey_A 223 DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFREG--RSKVLIT 299 (395)
T ss_dssp ECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHTT--SCCEEEE
T ss_pred EcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHHHHCC--CCCEEEE
Confidence 001 111223446677766 99999999999999887 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
|+++++|+|+| ++.||+++.|.+... ..+..+|.||+|||||.|.. |.++.+..
T Consensus 300 T~~~~~Gidip~~~~Vi~~~~p~~~~~---~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~ 354 (395)
T 3pey_A 300 TNVLARGIDIPTVSMVVNYDLPTLANG---QADPATYIHRIGRTGRFGRK---GVAISFVH 354 (395)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCBCTTS---SBCHHHHHHHHTTSSCTTCC---EEEEEEEC
T ss_pred CChhhcCCCcccCCEEEEcCCCCCCcC---CCCHHHhhHhccccccCCCC---ceEEEEEe
Confidence 99999999996 999999998865432 35899999999999999976 66665543
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=200.91 Aligned_cols=192 Identities=15% Similarity=0.184 Sum_probs=132.7
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhC--CCC-CcEEE-EecCCChHHHHHHHH-HcCCceEEeecccc---CCCcc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICA-NELHL-CGDPAAVPLIQQILQ-VTGDDVKVQSYERL---SPLVP 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~--l~a-~~i~l-~g~~~~~~~i~~l~~-~~~~~~~v~~~~r~---~pl~~ 76 (414)
+.+++++||||+|++.+..++..+...+.. ++. ....+ +.+++..+.++.+.. .++....+...... ..+..
T Consensus 173 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 173 LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 567899999999999887778888777753 332 12223 333333344454444 33443332221110 00100
Q ss_pred ----cc-----c-ccccccccC-CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccE
Q 015049 77 ----LN-----V-PLGSFSNIQ-TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 144 (414)
Q Consensus 77 ----~~-----~-~l~~l~~i~-~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~V 144 (414)
.. . ....+.... .+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+|
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~g--~~~v 329 (417)
T 2i4i_A 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSG--KSPI 329 (417)
T ss_dssp EEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHHT--SSCE
T ss_pred EEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-CeeEecCCCCHHHHHHHHHHHHcC--CCCE
Confidence 00 0 011122332 34566666 99999999999999887 899999999999999999999998 8999
Q ss_pred EEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHH
Q 015049 145 LVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLP 211 (414)
Q Consensus 145 LVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~ 211 (414)
||||+++++|+|+| ++.||+++.|. +..+|+||+|||||.|.. |.++.+ .+.+..
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~---------s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPS---------DIEEYVHRIGRTGRVGNL---GLATSFFNERNIN 386 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCS---------SHHHHHHHHTTBCC--CC---EEEEEEECGGGGG
T ss_pred EEECChhhcCCCcccCCEEEEEcCCC---------CHHHHHHhcCccccCCCC---ceEEEEEccccHH
Confidence 99999999999996 99999999887 999999999999999976 776655 444443
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.89 E-value=3.3e-22 Score=198.86 Aligned_cols=188 Identities=15% Similarity=0.200 Sum_probs=130.1
Q ss_pred CCCcCEEEEecccccCCC-CcchhHHHHHhCCCCCcEEEEecCCChHHHHHH-HHHcCCceEEeecc--ccC--CCccc-
Q 015049 5 VSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQI-LQVTGDDVKVQSYE--RLS--PLVPL- 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~-~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l-~~~~~~~~~v~~~~--r~~--pl~~~- 77 (414)
..+++++||||||.+.+. .+...+...+...+.....+..+++..+....+ ....+....+.... ... .+...
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 229 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEE
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEE
Confidence 578999999999999753 333444455544543333333333333333333 33444443332211 111 11100
Q ss_pred ----c----ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 78 ----N----VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 78 ----~----~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. ..+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+||||
T Consensus 230 ~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~ 306 (391)
T 1xti_A 230 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKDF--QRRILVA 306 (391)
T ss_dssp EECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--CCSEEEE
T ss_pred EEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHhcC--CCcEEEE
Confidence 0 000 112233456677766 99999999999999887 899999999999999999999998 8899999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
|+++++|+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++.+..
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~---------s~~~~~Qr~GR~~R~g~~---g~~~~~~~ 355 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPE---------DSDTYLHRVARAGRFGTK---GLAITFVS 355 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCS---------SHHHHHHHHCBCSSSCCC---CEEEEEEC
T ss_pred CChhhcCCCcccCCEEEEeCCCC---------CHHHHHHhcccccCCCCc---eEEEEEEc
Confidence 99999999997 99999999887 999999999999999976 66655543
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=8.6e-22 Score=207.50 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=146.6
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC-------CcEEEEecCCChHHHHHHHHHc-CCce--EEeeccccCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-------NELHLCGDPAAVPLIQQILQVT-GDDV--KVQSYERLSP 73 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-------~~i~l~g~~~~~~~i~~l~~~~-~~~~--~v~~~~r~~p 73 (414)
.+.+++++||||||++.+..++..+..++..++. ....++.+++..+.++.++... +... .+.......+
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 3578999999999999987777777766544321 2223333444444455555543 3222 2211111111
Q ss_pred --Ccc-------ccc-------ccc----cccc-cCCCCEEEEe-cHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHH
Q 015049 74 --LVP-------LNV-------PLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESR---GKHLCSIVYGSLPPETR 128 (414)
Q Consensus 74 --l~~-------~~~-------~l~----~l~~-i~~g~~Iv~f-sr~~~~~l~~~L~~~---~~~~v~~ihg~L~~e~R 128 (414)
... ... .+. .+.. ...+.+|||+ |++.++.++..|.+. +. .+..+||++++++|
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~-~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL-PILEFHGKITQNKR 330 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTS-CEEEESTTSCHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCC-cEEEecCCCCHHHH
Confidence 000 000 000 1111 2244567766 999999999999876 55 89999999999999
Q ss_pred HHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE-ec
Q 015049 129 TRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LD 206 (414)
Q Consensus 129 ~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~-~~ 206 (414)
..+++.|++| +.+|||||+++++|||+| ++.||+++.|. ++.+|+||+|||||.|.. |.++. +.
T Consensus 331 ~~~~~~F~~g--~~~vLVaT~~~~~GiDip~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~~---g~~i~~~~ 396 (579)
T 3sqw_A 331 TSLVKRFKKD--ESGILVCTDVGARGMDFPNVHEVLQIGVPS---------ELANYIHRIGRTARSGKE---GSSVLFIC 396 (579)
T ss_dssp HHHHHHHHHC--SSEEEEECGGGTSSCCCTTCCEEEEESCCS---------STTHHHHHHTTSSCTTCC---EEEEEEEE
T ss_pred HHHHHHhhcC--CCeEEEEcchhhcCCCcccCCEEEEcCCCC---------CHHHhhhhccccccCCCC---ceEEEEEc
Confidence 9999999998 899999999999999997 99999999998 999999999999999976 55544 34
Q ss_pred CCCHHHHHHhh---CCCCcccccCCCCCCHHHHHHHHhcC
Q 015049 207 SEDLPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLH 243 (414)
Q Consensus 207 ~~d~~~l~~~l---~~~~~~i~~~~i~p~~~~l~~~~~~~ 243 (414)
+.+...++... ........ ...|.......+...+
T Consensus 397 ~~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 434 (579)
T 3sqw_A 397 KDELPFVRELEDAKNIVIAKQE--KYEPSEEIKSEVLEAV 434 (579)
T ss_dssp GGGHHHHHHHHHHHCCCCCEEE--EECCCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhCCCccccc--CCCccHHHHHHHHHHH
Confidence 55665554443 22222221 1234555555555444
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=4.4e-22 Score=193.59 Aligned_cols=192 Identities=17% Similarity=0.249 Sum_probs=135.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHH-HHHHHcCCceEEeeccccCCCcc-----c-
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ-QILQVTGDDVKVQSYERLSPLVP-----L- 77 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~-~l~~~~~~~~~v~~~~r~~pl~~-----~- 77 (414)
..+++++|+||+|.+.+..++..+...+...+.....++.+++..+... .+....+....+........+.. .
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKD 206 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSS
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeCh
Confidence 4678999999999998777777777777666654444443444444333 34444444333322211111110 0
Q ss_pred --ccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccc
Q 015049 78 --NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 154 (414)
Q Consensus 78 --~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~G 154 (414)
...+..+.....+.+|||+ |++.++.+++.|. ++..+||++++++|..+++.|++| +.+|||||+++++|
T Consensus 207 ~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~~~~G 279 (337)
T 2z0m_A 207 DWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREG--EYDMLITTDVASRG 279 (337)
T ss_dssp SSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTT--SCSEEEECHHHHTT
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcC--CCcEEEEcCccccC
Confidence 0011222333455677766 9999998888764 688999999999999999999998 89999999999999
Q ss_pred ccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHH
Q 015049 155 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 215 (414)
Q Consensus 155 lnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~ 215 (414)
+|+| ++.||+++.|. +..+|.||+|||||.|.. |.++.+...+...+++
T Consensus 280 id~~~~~~Vi~~~~~~---------s~~~~~Q~~GR~gR~g~~---g~~~~~~~~~~~~~~~ 329 (337)
T 2z0m_A 280 LDIPLVEKVINFDAPQ---------DLRTYIHRIGRTGRMGRK---GEAITFILNEYWLEKE 329 (337)
T ss_dssp CCCCCBSEEEESSCCS---------SHHHHHHHHTTBCGGGCC---EEEEEEESSCHHHHHH
T ss_pred CCccCCCEEEEecCCC---------CHHHhhHhcCccccCCCC---ceEEEEEeCcHHHHHH
Confidence 9997 99999999887 999999999999999976 6665554466555544
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.85 E-value=2.1e-22 Score=200.32 Aligned_cols=187 Identities=13% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHH-HHHcCCceEEeeccccCC---Cc-----
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQI-LQVTGDDVKVQSYERLSP---LV----- 75 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l-~~~~~~~~~v~~~~r~~p---l~----- 75 (414)
..+++++||||+|++.+..++..+...+..++.....++.+++..+....+ ....+....+........ +.
T Consensus 160 ~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 160 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------
T ss_pred hhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEE
Confidence 467999999999999877777777777766654333333333333333333 334444443322111100 00
Q ss_pred c-----ccccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 76 P-----LNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 76 ~-----~~~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
. ....+ ..+.....+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +.+|||||
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T 316 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRSG--SSRILIST 316 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCC-eEEEeeCCCCHHHHHHHHHHHHCC--CCcEEEEC
Confidence 0 00111 112223345666655 99999999999998887 899999999999999999999998 89999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+++++|+|+| ++.||+++.|. +..+|.||+||+||.|.. |.++.+.
T Consensus 317 ~~~~~Gldi~~~~~Vi~~~~p~---------s~~~~~Qr~GR~~R~g~~---g~~~~~~ 363 (394)
T 1fuu_A 317 DLLARGIDVQQVSLVINYDLPA---------NKENYIHRIGRGGRFGRK---GVAINFV 363 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred ChhhcCCCcccCCEEEEeCCCC---------CHHHHHHHcCcccCCCCC---ceEEEEE
Confidence 9999999996 99999999887 999999999999999976 6665543
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=206.93 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCcCEEEEecccccCCCCcch-hHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEEeeccccC---CCc-----
Q 015049 6 SDYDCAVIDEIQMLGCKTRGF-SFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS---PLV----- 75 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~-~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v~~~~r~~---pl~----- 75 (414)
.+++++||||+|.+.+..... .+...+..++.....++.+++....+..++... .+...+....... .+.
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 313 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 313 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEE
Confidence 689999999999987643333 333334444444444455555555455555443 3332222111110 000
Q ss_pred c--ccc---cc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc
Q 015049 76 P--LNV---PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 76 ~--~~~---~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT 148 (414)
. ... .+ ..+.....+.+|||+ |++.++.++..|...+. .+.++||++++++|..+++.|++| +.+|||||
T Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~-~v~~lh~~~~~~~R~~~~~~f~~g--~~~iLv~T 390 (479)
T 3fmp_B 314 CSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFREG--KEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCc-cEEEecCCCCHHHHHHHHHHHHcC--CCcEEEEc
Confidence 0 000 01 112222345566655 99999999999998887 899999999999999999999998 89999999
Q ss_pred CcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 149 DAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 149 dal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+++++|+|+| ++.||+++.|.+.+. ..+..+|+||+|||||.|.. |.++.+.
T Consensus 391 ~~~~~GlDip~v~~VI~~d~p~~~~~---~~s~~~~~Qr~GRagR~g~~---G~~i~~~ 443 (479)
T 3fmp_B 391 NVCARGIDVEQVSVVINFDLPVDKDG---NPDNETYLHRIGRTGRFGKR---GLAVNMV 443 (479)
T ss_dssp -----------------------------------------------------------
T ss_pred cccccCCccccCCEEEEecCCCCCcc---CCCHHHHHHHhcccccCCCC---ceEEEEE
Confidence 9999999996 999999998852211 12778999999999999976 6655543
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=7.3e-22 Score=205.00 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=121.1
Q ss_pred CCCcCEEEEecccccCC-CCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcC-CceEEeeccccCCC---cc---
Q 015049 5 VSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKVQSYERLSPL---VP--- 76 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d-~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~-~~~~v~~~~r~~pl---~~--- 76 (414)
..+++++||||+|++.+ ..++..+...+..++.....+..+++..+..+.+..... ....+....+..+. ..
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 56799999999999986 345555666665555433334444444444555555443 33333221111111 00
Q ss_pred -c---c---ccc-ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEE
Q 015049 77 -L---N---VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 147 (414)
Q Consensus 77 -~---~---~~l-~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa 147 (414)
. . ..+ ..+.....+.+|||+ |++.++.++..|.+.+. .+.++||++++++|..+++.|++| +++||||
T Consensus 337 ~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~-~v~~~hg~~~~~~R~~il~~f~~g--~~~VLVa 413 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH-TVACLTGNLEGAQRDAIMDSFRVG--TSKVLVT 413 (508)
T ss_dssp EC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTC-CCCEEC-----CTTGGGTHHHHSS--SCCCCEE
T ss_pred ECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHCC--CCeEEEe
Confidence 0 0 001 112233456777766 99999999999998887 899999999999999999999998 8999999
Q ss_pred cCcccccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC---HHHHHHhhCCCCcc
Q 015049 148 SDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPM 223 (414)
Q Consensus 148 Tdal~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d---~~~l~~~l~~~~~~ 223 (414)
|+++++|+|+| ++.||+++.|.+.+. ..+..+|+||+|||||.|.. +.++++....++ +..+.+.+......
T Consensus 414 T~~l~~GiDip~v~~VI~~~~p~~~~~---~~s~~~~~Qr~GRagR~g~~-g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 414 TNVIARGIDVSQVNLVVNYDMPLDQAG---RPDPQTYLHRIGRTGRFGRV-GVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp CC-----CCCTTCCEEEC----CC--------CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred CChhhcCCCccCCCEEEEECCCCcccC---CCCHHHHHHHhhhcCCCCCC-cEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 99999999996 999999998853321 12899999999999999976 333333333333 45667776665554
Q ss_pred c
Q 015049 224 L 224 (414)
Q Consensus 224 i 224 (414)
+
T Consensus 490 l 490 (508)
T 3fho_A 490 V 490 (508)
T ss_dssp -
T ss_pred C
Confidence 4
No 27
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=5.8e-21 Score=202.41 Aligned_cols=267 Identities=15% Similarity=0.096 Sum_probs=156.4
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCCh-HHHHHHHHHcCCceEEeeccccCCCcccccccc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG 82 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~-~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~ 82 (414)
.+.+++++||||||++ +..+...+..++..++.....+++.+++. +.++.+.......+.+... .|.......+.
T Consensus 274 ~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~ll~ 349 (618)
T 2whx_A 274 RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIERE---IPERSWNTGFD 349 (618)
T ss_dssp SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECC---CCSSCCSSSCH
T ss_pred cccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeeccc---CCHHHHHHHHH
Confidence 4689999999999998 44455555555444432233333333333 2222222211111222111 11111122222
Q ss_pred cccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccE
Q 015049 83 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 161 (414)
Q Consensus 83 ~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~ 161 (414)
.+.+ ..+++|||+ |++.++.+++.|.+.+. .+..+||+ +|.++++.|++| +++||||||++++|||+|++.
T Consensus 350 ~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~----~R~~~l~~F~~g--~~~VLVaTdv~~rGiDi~v~~ 421 (618)
T 2whx_A 350 WITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRK----TFDTEYPKTKLT--DWDFVVTTDISEMGANFRAGR 421 (618)
T ss_dssp HHHH-CCSCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTT----THHHHTTHHHHS--CCSEEEECGGGGTTCCCCCSE
T ss_pred HHHh-CCCCEEEEECChhHHHHHHHHHHHcCC-cEEEEChH----HHHHHHHhhcCC--CcEEEEECcHHHcCcccCceE
Confidence 2222 356777777 99999999999999987 89999984 788999999998 899999999999999999999
Q ss_pred EEEcccccc-----CCc------ccccCCHHHHHhhhcccCCCCCCCCceEEEEec----CCCH---HHHHHhhCCCCcc
Q 015049 162 IIFSTMKKF-----DGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD----SEDL---PLLHKSLLEPSPM 223 (414)
Q Consensus 162 VI~~~~~k~-----dg~------~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~----~~d~---~~l~~~l~~~~~~ 223 (414)
||+++..+. +.. ...|.+.++|+||+|||||.|.. .|.++.+. ++|. ..+++.+......
T Consensus 422 VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~--~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~ 499 (618)
T 2whx_A 422 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ--EDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIY 499 (618)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCEEEEECSCCCCCCTTCHHHHHHHHHHTTCC
T ss_pred EEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC--CCeEEEEccCCchhhHHHHHHHHhHhcccccc
Confidence 998876322 111 12367999999999999999853 36665554 3443 3333332111111
Q ss_pred cccCCCCCCHHHHHHHHhcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCCCCHHHHHHhhcccCCCCCh
Q 015049 224 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 303 (414)
Q Consensus 224 i~~~~i~p~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~p~~~~~~ 303 (414)
+....+....... ..........|.+ .-+......+++....++....|..+..++..++.
T Consensus 500 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~l-~~~~~~~f~~ll~~~~~~~~l~~~v~~~~l~~~~~ 560 (618)
T 2whx_A 500 TPEGIIPTLFGPE------------------REKTQAIDGEFRL-RGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDR 560 (618)
T ss_dssp CTTCCCCCCCGGG------------------GGGCCCCTTTTCC-CHHHHHHHHHHHHTTCCCHHHHHHHHHTTCCTTCC
T ss_pred CCcchhhhccchh------------------hhccccCCceeEc-cHHHHHHHHHHhhccCCcHHHHHHHHhcCCCccce
Confidence 1111000000000 0011223334443 23334445555666667777888888888877654
No 28
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.83 E-value=1.4e-20 Score=204.11 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=173.4
Q ss_pred CcCCCcCEEEEecccc-cCCCCcchhHHHHHhCC-CCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccc--
Q 015049 3 DVVSDYDCAVIDEIQM-LGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN-- 78 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~-i~d~~rG~~~~~~l~~l-~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~-- 78 (414)
..+.+++++||||+|. ..|.+....+-..+... +...+.+++++.. .+.+..+++....+....+..|+....
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~---~~~l~~~~~~~~vi~v~gr~~pv~~~~~~ 280 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLD---AEKFQRYFNDAPLLAVPGRTYPVELYYTP 280 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSC---CHHHHHHTTSCCEEECCCCCCCEEEECCS
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEecccc---HHHHHHHhcCCCcccccCcccceEEEEec
Confidence 3578899999999996 33322222222222222 2334444444433 345566666544444444444443211
Q ss_pred --------cccccc----cccCCCCEEEEe-cHHHHHHHHHHHHH----------cCCCeEEEecCCCCHHHHHHHHHHh
Q 015049 79 --------VPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIES----------RGKHLCSIVYGSLPPETRTRQATRF 135 (414)
Q Consensus 79 --------~~l~~l----~~i~~g~~Iv~f-sr~~~~~l~~~L~~----------~~~~~v~~ihg~L~~e~R~~~~~~F 135 (414)
..+..+ .....|++|||+ ++++++.+++.|.+ .....+..+||+|++++|..+++.|
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 001111 112467888877 99999999999975 1233789999999999999999999
Q ss_pred h-----CCCCcccEEEEcCcccccccCC-ccEEEEccccc---cCCcc------cccCCHHHHHhhhcccCCCCCCCCce
Q 015049 136 N-----DASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGVE------LRDLTVPEVKQIAGRAGRYGSKFPVG 200 (414)
Q Consensus 136 ~-----~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k---~dg~~------~~~ls~~~~~QraGRAGR~g~~~~~G 200 (414)
+ +| ..+||||||++++|||+| |+.||+++.++ ||+.. ..|.+..+|.||+|||||. .. |
T Consensus 361 ~~~~~~~g--~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~---G 434 (773)
T 2xau_A 361 PESHNGRP--GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RP---G 434 (773)
T ss_dssp CCCSSSSC--CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SS---E
T ss_pred ccccCCCC--ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CC---C
Confidence 9 77 899999999999999997 99999988865 66431 2378999999999999998 33 8
Q ss_pred EEEEecCCCHHHH-HHhhCCCCcccccCCCCCCHHHHHHHH----------hcCCCchHHHHHHHHHHhcccCCCccccC
Q 015049 201 EVTCLDSEDLPLL-HKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENYFFAN 269 (414)
Q Consensus 201 ~v~~~~~~d~~~l-~~~l~~~~~~i~~~~i~p~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 269 (414)
.++.+..++ .. ..+.....+++....+....-.+..+. +.++...+...++.+..+..++....+
T Consensus 435 ~~~~l~~~~--~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~l-- 510 (773)
T 2xau_A 435 KCFRLYTEE--AFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNL-- 510 (773)
T ss_dssp EEEESSCHH--HHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCB--
T ss_pred EEEEEecHH--HhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCc--
Confidence 888886532 23 333334444555444432222222221 112334566777777777776654332
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHhhcc
Q 015049 270 CEEVLKVATVIDQLPLRLHEKYLFCIS 296 (414)
Q Consensus 270 ~~~~~~~~~~l~~~~l~~~~~~~~~~~ 296 (414)
..+...+..+++++..--.+..+
T Consensus 511 ----T~lG~~~a~~pl~p~~~~~l~~~ 533 (773)
T 2xau_A 511 ----TPLGRLASQFPLDPMLAVMLIGS 533 (773)
T ss_dssp ----CHHHHHHTTSSSCHHHHHHHHHG
T ss_pred ----ChhhhhhccccCCHHHHHHHHhh
Confidence 34566777777776654444444
No 29
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=164.51 Aligned_cols=129 Identities=21% Similarity=0.375 Sum_probs=99.3
Q ss_pred ccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEE
Q 015049 86 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 163 (414)
Q Consensus 86 ~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI 163 (414)
....+.+|||+ |++.++.++..|.+.+. .+..+||++++++|..+++.|++| +++|||||+++++|+|+| ++.||
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~f~~g--~~~vLvaT~~~~~Gid~~~~~~Vi 107 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDGH-QVSLLSGELTVEQRASIIQRFRDG--KEKVLITTNVCARGIDVKQVTIVV 107 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECSSCCHHHHHHHHHHHHTT--SCSEEEECCSCCTTTCCTTEEEEE
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEecchhcCCCcccCCEEE
Confidence 33456677776 99999999999998887 899999999999999999999998 899999999999999996 99999
Q ss_pred EccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHH---HHHHhhCCCCcc
Q 015049 164 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLP---LLHKSLLEPSPM 223 (414)
Q Consensus 164 ~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~---~l~~~l~~~~~~ 223 (414)
+++.|.+.+. ..+..+|+||+|||||.|.. |.++.+ .+.+.. .+.+.+....++
T Consensus 108 ~~d~p~~~~~---~~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 165 (175)
T 2rb4_A 108 NFDLPVKQGE---EPDYETYLHRIGRTGRFGKK---GLAFNMIEVDELPSLMKIQDHFNSSIKQ 165 (175)
T ss_dssp ESSCCC--CC---SCCHHHHHHHHCBC----CC---EEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred EeCCCCCccc---cCCHHHHHHHhcccccCCCC---ceEEEEEccchHHHHHHHHHHhcCcccc
Confidence 9998843322 13999999999999999965 776655 344443 344555554443
No 30
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.83 E-value=5.7e-20 Score=162.19 Aligned_cols=112 Identities=23% Similarity=0.428 Sum_probs=97.8
Q ss_pred cCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEE
Q 015049 87 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 164 (414)
Q Consensus 87 i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~ 164 (414)
...+.+|||+ |++.++.+++.|.+.+. .+..+||++++++|..+++.|++| +++|||||+++++|+|+| ++.||+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gld~~~~~~Vi~ 109 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGY-PCDKIHGGMIQEDRFDVMNEFKRG--EYRYLVATDVAARGIDIENISLVIN 109 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--SCSEEEECGGGTTTCCCSCCSEEEE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHcC--CCeEEEECChhhcCCchhcCCEEEE
Confidence 3456677776 99999999999999887 899999999999999999999998 899999999999999997 999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHHH
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLL 213 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~l 213 (414)
++.|. ++.+|.||+||+||.|.. |.++.+ .+.+...+
T Consensus 110 ~~~p~---------~~~~~~qr~GR~~R~g~~---g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 110 YDLPL---------EKESYVHRTGRTGRAGNK---GKAISFVTAFEKRFL 147 (163)
T ss_dssp SSCCS---------SHHHHHHHTTTSSCTTCC---EEEEEEECGGGHHHH
T ss_pred eCCCC---------CHHHHHHhccccCcCCCC---ceEEEEecHHHHHHH
Confidence 99887 999999999999999976 666655 34444433
No 31
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=5.4e-20 Score=169.60 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=99.7
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
..+++|||+ |++.++.++..|.+.+. .+.++||++++++|..+++.|++| +++||||||++++|+|+| ++.||++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~r~~~~~~f~~g--~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDLSQGERERVLGAFRQG--EVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-CEEEECSSSCHHHHHHHHHHHHSS--SCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHCC--CCeEEEecChhhcCCCCccCcEEEEC
Confidence 466777777 99999999999999887 899999999999999999999998 899999999999999996 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec-CCCHH---HHHHhhCCC
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP---LLHKSLLEP 220 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~-~~d~~---~l~~~l~~~ 220 (414)
+.|. ++.+|.||+|||||.|.. |.++.+. +.+.. .+.+.+...
T Consensus 107 ~~p~---------~~~~~~qr~GR~gR~g~~---g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 107 RLPD---------RAEAYQHRSGRTGRAGRG---GRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp SCCS---------SHHHHHHHHTTBCCCC-----BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred CCCc---------CHHHHHHHhcccCCCCCC---CeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9987 999999999999999976 7766654 34443 334444433
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.82 E-value=4.4e-21 Score=195.81 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 167 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~ 167 (414)
.++++||+ |++.++.+++.|.+.+. +++.+|| ++|..+++.|++| +++||||||++++|+|+|++.||+++.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~-~v~~lhg----~~R~~~~~~F~~g--~~~vLVaT~v~e~GiDipv~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGK-SVVVLNR----KTFEREYPTIKQK--KPDFILATDIAEMGANLCVERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-CEEECCS----SSCC--------C--CCSEEEESSSTTCCTTCCCSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC-CEEEecc----hhHHHHHhhhcCC--CceEEEECChhheeeccCceEEEeCCc
Confidence 56677766 99999999999999887 8999999 4789999999998 999999999999999999999998554
Q ss_pred cc-----cCCc-----ccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 168 KK-----FDGV-----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 168 ~k-----~dg~-----~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
.+ +++. ...|.+.++|.||+|||||.|.. .|.++.+
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~--~g~~~~l 295 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR--DGDSYYY 295 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCEEEEE
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCC--CceEEEE
Confidence 32 1221 22356999999999999998532 3777666
No 33
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.82 E-value=2.5e-20 Score=190.72 Aligned_cols=190 Identities=18% Similarity=0.144 Sum_probs=117.9
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccccccc
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 83 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~ 83 (414)
.+.+++++||||+|++ +...+..+.............+++.+++.+. ...........+....+..|-......+..
T Consensus 107 ~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (451)
T 2jlq_A 107 RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPG--STDPFPQSNSPIEDIEREIPERSWNTGFDW 183 (451)
T ss_dssp CCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT--CCCSSCCCSSCEEEEECCCCSSCCSSSCHH
T ss_pred cccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCc--cchhhhcCCCceEecCccCCchhhHHHHHH
Confidence 3678999999999988 3333333322222111123334443433321 111111111111112233332111111122
Q ss_pred ccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEE
Q 015049 84 FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 162 (414)
Q Consensus 84 l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~V 162 (414)
+.. ..+.+|||+ |++.++.+++.|.+.+. .+..+||++. ..+++.|++| +.+||||||++++|+|+|.+.|
T Consensus 184 l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~----~~~~~~f~~g--~~~vLVaT~v~~~GiDip~~~V 255 (451)
T 2jlq_A 184 ITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRKTF----DTEYPKTKLT--DWDFVVTTDISEMGANFRAGRV 255 (451)
T ss_dssp HHH-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECTTTH----HHHGGGGGSS--CCSEEEECGGGGSSCCCCCSEE
T ss_pred HHh-CCCCEEEEcCCHHHHHHHHHHHHHcCC-eEEECCHHHH----HHHHHhhccC--CceEEEECCHHHhCcCCCCCEE
Confidence 222 256777766 99999999999998887 8899999754 5789999998 8999999999999999988999
Q ss_pred EEccccc-----cCCcc------cccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 163 IFSTMKK-----FDGVE------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 163 I~~~~~k-----~dg~~------~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
|+++..+ |++.. ..|.+..+|+||+|||||.|.+ .|.++.+.
T Consensus 256 I~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~--~g~~~~~~ 308 (451)
T 2jlq_A 256 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ--EDDQYVFS 308 (451)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCEEEEEC
T ss_pred EECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC--CccEEEEe
Confidence 9877221 22211 1567999999999999999973 25555554
No 34
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=8.6e-20 Score=161.30 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=97.7
Q ss_pred cCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEE
Q 015049 87 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 164 (414)
Q Consensus 87 i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~ 164 (414)
...+.+|||+ |++.++.++..|.+.+. .+..+||++++++|..+++.|++| +.+|||||+++++|+|+| ++.||+
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~G~d~~~~~~Vi~ 104 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRSG--SSRILISTDLLARGIDVQQVSLVIN 104 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--SCSEEEEEGGGTTTCCCCSCSEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHcC--CCEEEEEcChhhcCCCcccCCEEEE
Confidence 3456677766 99999999999998887 899999999999999999999998 899999999999999996 999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe-cCCCHHH---HHHhhCCCCcc
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPL---LHKSLLEPSPM 223 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~-~~~d~~~---l~~~l~~~~~~ 223 (414)
++.|. ++.+|.||+|||||.|.. |.++.+ .+.+... +.+.+....++
T Consensus 105 ~~~p~---------~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 105 YDLPA---------NKENYIHRIGRGGRFGRK---GVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp SSCCS---------SGGGGGGSSCSCC--------CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred eCCCC---------CHHHHHHHhcccccCCCC---ceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 99887 999999999999999965 555544 4445543 44455554443
No 35
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=6.9e-20 Score=163.33 Aligned_cols=106 Identities=20% Similarity=0.326 Sum_probs=95.2
Q ss_pred cCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEE
Q 015049 87 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 164 (414)
Q Consensus 87 i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~ 164 (414)
...+.+|||+ |++.++.++..|...+. .+..+||++++++|..+++.|++| +.+|||||+++++|+|+| ++.||+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldi~~~~~Vi~ 105 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKDF--QRRILVATNLFGRGMDIERVNIAFN 105 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHTT--SCSEEEESSCCSTTCCGGGCSEEEE
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHCC--CCcEEEECCchhcCcchhhCCEEEE
Confidence 3456677776 99999999999999887 899999999999999999999998 899999999999999996 999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
++.|. ++.+|.||+|||||.|.. |.++++..
T Consensus 106 ~d~p~---------~~~~~~qr~GR~~R~g~~---g~~~~~~~ 136 (172)
T 1t5i_A 106 YDMPE---------DSDTYLHRVARAGRFGTK---GLAITFVS 136 (172)
T ss_dssp SSCCS---------SHHHHHHHHHHHTGGGCC---CEEEEEEC
T ss_pred ECCCC---------CHHHHHHHhcccccCCCC---cEEEEEEc
Confidence 99887 999999999999999976 66665543
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=4e-20 Score=197.46 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=89.3
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEcc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 166 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~ 166 (414)
..+++|||+ |++.++.+++.|.+.+. ++..+||. +|.++++.|++| +++||||||++++|||+|++.||+++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~-~v~~lHg~----eR~~v~~~F~~g--~~~VLVaTdv~e~GIDipv~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK-RVIQLNRK----SYDTEYPKCKNG--DWDFVITTDISEMGANFGASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECSS----SHHHHGGGGGTC--CCSEEEECGGGGTTCCCCCSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-eEEEeChH----HHHHHHHHHHCC--CceEEEECchhhcceeeCCcEEEECC
Confidence 356777766 99999999999998887 89999994 899999999998 89999999999999999999999866
Q ss_pred ccc-----cCCc------ccccCCHHHHHhhhcccCCC-CCCCCceEEEEe
Q 015049 167 MKK-----FDGV------ELRDLTVPEVKQIAGRAGRY-GSKFPVGEVTCL 205 (414)
Q Consensus 167 ~~k-----~dg~------~~~~ls~~~~~QraGRAGR~-g~~~~~G~v~~~ 205 (414)
... ||.. -..|.+.++|+||+|||||. |.. |.++++
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~---G~ai~l 529 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI---GDEYHY 529 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC---CEEEEE
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC---CEEEEE
Confidence 322 2221 12466999999999999999 444 777766
No 37
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=160.59 Aligned_cols=103 Identities=22% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
.+.+|||+ |+..++.+++.|...+. .+..+||++++++|..+++.|++| +++|||||+++++|+|+| ++.||+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGV-EAVAIHGGKDQEERTKAIEAFREG--KKDVLVATDVASKGLDFPAIQHVINYD 130 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHHT--SCSEEEECHHHHTTCCCCCCSEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhcC--CCEEEEEcCchhcCCCcccCCEEEEeC
Confidence 44677766 99999999999998887 899999999999999999999998 899999999999999996 99999999
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.|. ++.+|.||+||+||.|.. |.++++.
T Consensus 131 ~p~---------~~~~~~qr~GR~gR~g~~---g~~i~l~ 158 (191)
T 2p6n_A 131 MPE---------EIENYVHRIGRTGCSGNT---GIATTFI 158 (191)
T ss_dssp CCS---------SHHHHHHHHTTSCC---C---CEEEEEE
T ss_pred CCC---------CHHHHHHHhCccccCCCC---cEEEEEE
Confidence 887 999999999999999976 6555543
No 38
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.79 E-value=1.4e-19 Score=191.70 Aligned_cols=184 Identities=17% Similarity=0.151 Sum_probs=115.9
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCc--EEEEecCCChHHHHHHHHHcCCc-eEEeeccccCCCccccccc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAAVPLIQQILQVTGDD-VKVQSYERLSPLVPLNVPL 81 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~--i~l~g~~~~~~~i~~l~~~~~~~-~~v~~~~r~~pl~~~~~~l 81 (414)
+++++++||||||++. .++...+..++..++... ..+..+++....+. ..... ..+.. ....++......
T Consensus 316 l~~l~~lVlDEAH~l~-~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~----~~~p~i~~v~~-~~~~~i~~~~~~- 388 (666)
T 3o8b_A 316 GGAYDIIICDECHSTD-STTILGIGTVLDQAETAGARLVVLATATPPGSVT----VPHPNIEEVAL-SNTGEIPFYGKA- 388 (666)
T ss_dssp TTSCSEEEETTTTCCS-HHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC----CCCTTEEEEEC-BSCSSEEETTEE-
T ss_pred cCcccEEEEccchhcC-ccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc----cCCcceEEEee-cccchhHHHHhh-
Confidence 4579999999999874 333344555555555322 23332333322110 00111 11110 001111111111
Q ss_pred ccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc
Q 015049 82 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 160 (414)
Q Consensus 82 ~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~ 160 (414)
..+.....+++|||+ |++.++.+++.|++.+. .+..+||+|++++ |+++ +.+||||||++++|||+|++
T Consensus 389 ~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~-~v~~lHG~l~q~e-------r~~~--~~~VLVATdVaerGIDIdV~ 458 (666)
T 3o8b_A 389 IPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGI-NAVAYYRGLDVSV-------IPTI--GDVVVVATDALMTGYTGDFD 458 (666)
T ss_dssp ECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECTTSCGGG-------SCSS--SCEEEEECTTHHHHCCCCBS
T ss_pred hhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCC-cEEEecCCCCHHH-------HHhC--CCcEEEECChHHccCCCCCc
Confidence 113344567788877 99999999999999887 8999999999875 4444 55999999999999999999
Q ss_pred EEEEccccc-----cC--Cc-----ccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCC
Q 015049 161 RIIFSTMKK-----FD--GV-----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 209 (414)
Q Consensus 161 ~VI~~~~~k-----~d--g~-----~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d 209 (414)
.||+.+..+ || .. ...|.+.++|+||+||||| |.. |.++.+.+.+
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~---G~i~lvt~~e 515 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR---GIYRFVTPGE 515 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC---EEEEESCCCC
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC---CEEEEEecch
Confidence 999866332 33 21 1257799999999999999 765 7644444443
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=2.1e-19 Score=182.85 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=87.9
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 167 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~ 167 (414)
.++++||+ |++.++.+++.|.+.+. +++.+||+ +|.++++.|++| +++|||||+++++|+|+|+..||+++.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~----~r~~~~~~f~~g--~~~vLVaT~v~e~GiDip~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGK-KVLYLNRK----TFESEYPKCKSE--KWDFVITTDISEMGANFKADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTC-CEEEESTT----THHHHTTHHHHS--CCSEEEECGGGGTSCCCCCSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC-eEEEeCCc----cHHHHHHhhcCC--CCeEEEECchHHcCcccCCcEEEecCc
Confidence 56777766 99999999999998876 89999997 688999999998 999999999999999999999876654
Q ss_pred ccc---C-----CcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 168 KKF---D-----GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 168 ~k~---d-----g~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.+. | -....|.+.++|.||+||+||.|.. .|.++.+.
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~--~~~~~~~~ 288 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK--LGDIYAYS 288 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCCEEEEC
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCC--CCeEEEEc
Confidence 431 1 0112356999999999999999854 35555553
No 40
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=6.4e-20 Score=188.12 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=84.3
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 167 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~ 167 (414)
.+.+|||+ |++.++.+++.|.+.+. .+..+||. +|..+++.|++| +.+||||||++++|+|+|.+.||+++.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~-~v~~lh~~----~R~~~~~~f~~g--~~~iLVaT~v~~~GiDip~~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGK-KVIQLNRK----SYDTEYPKCKNG--DWDFVITTDISEMGANFGASRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-CEEEESTT----CCCCCGGGSSSC--CCSEEEESSCC---CCCSCSEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCC-cEEecCHH----HHHHHHhhccCC--CceEEEECChHHhCeecCCCEEEECCc
Confidence 56777766 99999999999999887 89999995 788999999998 899999999999999998889998652
Q ss_pred cc-----cCCcc------cccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 168 KK-----FDGVE------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 168 ~k-----~dg~~------~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
.+ |++.. ..|.+.++|+||+|||||.|.. .|.++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~--~G~~~~~ 309 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ--VGDEYHY 309 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC--CCEEEEE
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCC--CCeEEEE
Confidence 22 22221 1456999999999999999962 2554444
No 41
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=5.6e-19 Score=171.26 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=97.2
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
..+++|||+ |++.++.++..|.+.+. .+..+||+|++++|..+++.|++| +++||||||++++|+|+| ++.||++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~l~~~~r~~~~~~f~~g--~~~vLVaT~va~~Gidi~~v~~VI~~ 103 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDMSQGERERVMGAFRQG--EVRVLVATDVAARGLDIPQVDLVVHY 103 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC-CEEEECSCCCTHHHHHHHHHHHHT--SCCEEEECSTTTCSTTCCCCSEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhcC--CceEEEEechhhcCccccceeEEEEc
Confidence 466778777 99999999999998887 899999999999999999999998 899999999999999996 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec-CCCHH---HHHHhhCCCC
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP---LLHKSLLEPS 221 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~-~~d~~---~l~~~l~~~~ 221 (414)
+.|. +..+|.||+|||||.|.. |.++.+. +.+.. .+.+.+....
T Consensus 104 d~p~---------s~~~y~Qr~GRagR~g~~---G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 104 RMPD---------RAEAYQHRSGRTGRAGRG---GRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp SCCS---------STTHHHHHHTCCC--------CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred CCCC---------CHHHHHHHccCcCcCCCC---ceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9987 999999999999999976 7666554 44543 3444444443
No 42
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=159.91 Aligned_cols=103 Identities=20% Similarity=0.344 Sum_probs=79.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
.+.+|||+ |++.++.++..|...|. .+..+||++++++|..+++.|++| +++|||||+++++|+|+| ++.||+++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSG--KSPILVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC--------CHHHHHHHHT--SSSEEEEEC------CCCSBSEEEESS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCCHHHHHHHHHHHHcC--CCeEEEEcChhhcCCCcccCCEEEEeC
Confidence 45567766 99999999999999887 899999999999999999999998 899999999999999996 99999999
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.|. ++.+|.||+|||||.|.. |.++++.
T Consensus 123 ~p~---------s~~~~~Qr~GR~~R~g~~---g~~~~~~ 150 (185)
T 2jgn_A 123 LPS---------DIEEYVHRIGRTGRVGNL---GLATSFF 150 (185)
T ss_dssp CCS---------SHHHHHHHHTTBCCTTSC---EEEEEEE
T ss_pred CCC---------CHHHHHHHccccCCCCCC---cEEEEEE
Confidence 887 999999999999999976 7766553
No 43
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=3.1e-18 Score=173.29 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=84.8
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecC--------CCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG--------SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 158 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg--------~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~- 158 (414)
.+.+|||+ ++..++.+++.|.+.+. .+..+|| ++++++|.++++.|++| +.+|||||+++++|+|+|
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~--~~~vLv~T~~~~~Gldl~~ 437 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGI-KAKRFVGQASKENDRGLSQREQKLILDEFARG--EFNVLVATSVGEEGLDVPE 437 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC-CEEEECCSSCC-------CCHHHHHHHHHHHT--SCSEEEECGGGGGGGGSTT
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCC-CcEEEeccccccccccCCHHHHHHHHHHHhcC--CceEEEECCccccCCCchh
Confidence 45567766 89999999999999887 8999999 99999999999999998 899999999999999997
Q ss_pred ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCC
Q 015049 159 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 195 (414)
Q Consensus 159 i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~ 195 (414)
++.||+++.+. ++..|.||+|||||.|.
T Consensus 438 ~~~Vi~~d~~~---------~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 438 VDLVVFYEPVP---------SAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp CCEEEESSCCH---------HHHHHHHHHTTSCSCCC
T ss_pred CCEEEEeCCCC---------CHHHHHHHHhhccCCCC
Confidence 99999999887 99999999999999985
No 44
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.78 E-value=5.5e-19 Score=177.96 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=87.7
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEE-EecCCCCHHHHHHHHHHhhCCCCcccEEEE----cCcccccccCC--cc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~-~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa----Tdal~~Glnl~--i~ 160 (414)
++.+|||+ |++.++.++..|.+.+. .+. .+||. .|. ++.|++| +++|||| |+++++|+|+| ++
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~----~r~--~~~f~~g--~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF----EKN--FEDFKVG--KINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTC-CEEESSSCH----HHH--HHHHHTT--SCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-ceehhhcCc----chH--HHHHhCC--CCeEEEEecCcCchhhccCccccccC
Confidence 45677766 99999999999999987 787 88985 344 9999998 8999999 99999999996 79
Q ss_pred EEEEcccc--ccCCcccccCCHHHHHhhhcccCCCCCCC-CceEEEEecCCCHH
Q 015049 161 RIIFSTMK--KFDGVELRDLTVPEVKQIAGRAGRYGSKF-PVGEVTCLDSEDLP 211 (414)
Q Consensus 161 ~VI~~~~~--k~dg~~~~~ls~~~~~QraGRAGR~g~~~-~~G~v~~~~~~d~~ 211 (414)
.||+++.| . +..+|+||+|||||.|.+. ..|.++.+. ++..
T Consensus 323 ~VI~~~~p~~~---------~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~~~ 366 (414)
T 3oiy_A 323 YVIFWGTPSGP---------DVYTYIQASGRSSRILNGVLVKGVSVIFE-EDEE 366 (414)
T ss_dssp EEEEESCCTTT---------CHHHHHHHHGGGCCEETTEECCEEEEEEC-CCHH
T ss_pred EEEEECCCCCC---------CHHHHHHHhCccccCCCCCCcceEEEEEE-ccHH
Confidence 99999998 6 9999999999999998520 148888877 4543
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=184.71 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=81.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc------CCCeEEEecCC--------CCHHHHHHHHHHhhCCCCcccEEEEcCcccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR------GKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGM 153 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~------~~~~v~~ihg~--------L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~ 153 (414)
.+.+|||+ |++.++.+++.|... |. ++..+||+ |++++|..+++.|++| +++|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~-~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g--~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGV-KAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG--KINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCc-ceEEEECCCCccCCCCCCHHHHHHHHHHHhcC--CCcEEEEcccccc
Confidence 45677766 999999999999876 66 88999999 9999999999999998 8999999999999
Q ss_pred cccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCC
Q 015049 154 GLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194 (414)
Q Consensus 154 Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g 194 (414)
|||+| ++.||+++.|. ++.+|.||+|||||.|
T Consensus 477 GIDip~v~~VI~~d~p~---------s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVT---------NEIAMVQARGRARADE 509 (699)
T ss_dssp TSCCCSCCCCEEESCCC---------CHHHHHHHHTTSCSSS
T ss_pred CCccccCCEEEEeCCCC---------CHHHHHHHcCCCCCCC
Confidence 99996 99999999987 9999999999988766
No 46
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.61 E-value=6.7e-20 Score=162.88 Aligned_cols=104 Identities=22% Similarity=0.335 Sum_probs=92.4
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
..+.+|||+ |++.++.++..|...+. .+..+||++++++|..+++.|++| +++|||||+++++|+|+| ++.||++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI-NNCYLEGEMVQGKRNEAIKRLTEG--RVNVLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 345566655 99999999999998887 899999999999999999999998 899999999999999996 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+.|. ++.+|.||+||+||.|.. |.++.+.
T Consensus 106 ~~p~---------~~~~~~qr~GR~~R~g~~---g~~~~~~ 134 (170)
T 2yjt_D 106 DMPR---------SGDTYLHRIGRTARAGRK---GTAISLV 134 (170)
Confidence 9887 999999999999999976 6655543
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.74 E-value=1.1e-17 Score=188.52 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=123.5
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccc--cCCCccccc---
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER--LSPLVPLNV--- 79 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r--~~pl~~~~~--- 79 (414)
..+++++||||+|.+ |......+..+......++.++++.+....+....-....+..... ..++.....
T Consensus 723 ~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~ 797 (1151)
T 2eyq_A 723 FKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 797 (1151)
T ss_dssp CSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECC
T ss_pred ccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCC
Confidence 468999999999996 4444555555544333344444444433333322111222211110 011110000
Q ss_pred --c-cc-cccccC-CCCEEEEe-cHHHHHHHHHHHHHc--CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc
Q 015049 80 --P-LG-SFSNIQ-TGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 151 (414)
Q Consensus 80 --~-l~-~l~~i~-~g~~Iv~f-sr~~~~~l~~~L~~~--~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal 151 (414)
. .. .+..+. .++++||+ +++.++.+++.|.+. +. +++++||+|++++|..+++.|++| +++|||||+++
T Consensus 798 ~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~-~v~~lhg~~~~~eR~~il~~F~~g--~~~VLVaT~v~ 874 (1151)
T 2eyq_A 798 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRERELERVMNDFHHQ--RFNVLVCTTII 874 (1151)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTS-CEEECCSSCCHHHHHHHHHHHHTT--SCCEEEESSTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCC-eEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEECCcc
Confidence 0 00 011222 44555554 888999999999887 44 899999999999999999999998 89999999999
Q ss_pred cccccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 152 GMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 152 ~~Glnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
++|+|+| ++.||+.+.+.| +..+|.||+||+||.|.. |+++.+.+.
T Consensus 875 e~GiDip~v~~VIi~~~~~~--------~l~~l~Qr~GRvgR~g~~---g~~~ll~~~ 921 (1151)
T 2eyq_A 875 ETGIDIPTANTIIIERADHF--------GLAQLHQLRGRVGRSHHQ---AYAWLLTPH 921 (1151)
T ss_dssp GGGSCCTTEEEEEETTTTSS--------CHHHHHHHHTTCCBTTBC---EEEEEEECC
T ss_pred eeeecccCCcEEEEeCCCCC--------CHHHHHHHHhccCcCCCc---eEEEEEECC
Confidence 9999997 899998876543 788999999999999976 888777554
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.74 E-value=5.3e-18 Score=176.23 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=47.2
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc------------CCCeEEEecCCCCHHHHHHHHHHhhC-CCCcccEEEEcCccccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMG 154 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~------------~~~~v~~ihg~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~G 154 (414)
.+.+|||+ ++..++.++..|.+. |. .+..+||++++++|..+++.|++ | +++|||||+++++|
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~R~~~~~~F~~~g--~~~vLvaT~~~~~G 466 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR-GRRDQTTGMTLPSQKGVLDAFKTSK--DNRLLIATSVADEG 466 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------------CCEEEEEC-----
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEcc-CCcccccccCHHHHHHHHHHhcccC--ceEEEEEcCchhcC
Confidence 35567766 999999999999875 33 45566889999999999999999 7 89999999999999
Q ss_pred ccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 155 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 155 lnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
||+| ++.||+++.|. ++..|.||+|| ||.+ . |.++.+.
T Consensus 467 iDip~v~~VI~~d~p~---------s~~~~~Qr~GR-gR~~-~---g~~~~l~ 505 (556)
T 4a2p_A 467 IDIVQCNLVVLYEYSG---------NVTKMIQVRGR-GRAA-G---SKCILVT 505 (556)
T ss_dssp ------CEEEEETCCS---------CHHHHHHC-------------CCEEEEE
T ss_pred CCchhCCEEEEeCCCC---------CHHHHHHhcCC-CCCC-C---ceEEEEE
Confidence 9996 99999999987 99999999999 9983 3 5555443
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=173.47 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=66.1
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC-----------CCeEEEecCCCCHHHHHHHHHHhhC-CCCcccEEEEcCccccccc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLN 156 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~-----------~~~v~~ihg~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~Gln 156 (414)
+.+|||+ ++..++.++..|...+ ..+...+||+|++++|..+++.|++ | +++|||||+++++|||
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g--~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG--DNNILIATSVADEGID 467 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------------CCSEEEECCCTTCCEE
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC--CeeEEEEcchhhcCCc
Confidence 5677766 9999999999998764 1144455679999999999999999 7 8999999999999999
Q ss_pred CC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 157 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 157 l~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+| ++.||+++.|. ++.+|.||+|| ||. .. |.++.+...
T Consensus 468 lp~v~~VI~~d~p~---------s~~~~~Qr~GR-gR~-~~---g~~~~l~~~ 506 (555)
T 3tbk_A 468 IAECNLVILYEYVG---------NVIKMIQTRGR-GRA-RD---SKCFLLTSS 506 (555)
T ss_dssp TTSCSEEEEESCCS---------SCCCEECSSCC-CTT-TS---CEEEEEESC
T ss_pred cccCCEEEEeCCCC---------CHHHHHHhcCc-CcC-CC---ceEEEEEcC
Confidence 96 99999999887 99999999999 887 33 666655443
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.72 E-value=6e-18 Score=175.03 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=90.6
Q ss_pred CCCEEE-EecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc-CcccccccCC-ccEEEEc
Q 015049 89 TGDCIV-TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 89 ~g~~Iv-~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT-dal~~Glnl~-i~~VI~~ 165 (414)
.+..++ |.+.+.++.+++.|.+.+. ++..+||++++++|.++++.|++| +++||||| +++++|+|+| ++.||++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~-~v~~~~g~~~~~~r~~i~~~f~~g--~~~vLv~T~~~~~~GiDip~v~~vi~~ 423 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYD-KVYYVSGEVDTETRNIMKTLAENG--KGIIIVASYGVFSTGISVKNLHHVVLA 423 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCS-SEEEESSSTTHHHHHHHHHHHHHC--CSCEEEEEHHHHHHSCCCCSEEEEEES
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCC-CeEEEECCCCHHHHHHHHHHHhCC--CCCEEEEEcChhhcccccccCcEEEEe
Confidence 344544 4488899999999998876 899999999999999999999998 88999999 9999999997 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
+.+. ++.+|.|++||+||.|.+.....++.+.
T Consensus 424 ~~~~---------s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 424 HGVK---------SKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp SCCC---------SCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred CCCC---------CHHHHHHHHhcccccCCCCceEEEEEee
Confidence 9886 8899999999999999762234444443
No 51
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.71 E-value=1.3e-16 Score=170.47 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=93.3
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
.+.+|||+ |++.++.++..|.+.|. ++.++||++++.+|..+++.|++| +++|||||+++++|+|+| ++.||+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~~~~f~~g--~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELDAFKRQALIRDLRLG--HYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHTT--SCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-CceeecCCCCHHHHHHHHHHhhcC--CceEEEccChhhcCccCCCCCEEEEeC
Confidence 34566666 99999999999999988 899999999999999999999998 899999999999999997 89999999
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
..+|.. |.+..+|+||+|||||.| . |.++.+...
T Consensus 516 ~d~~G~----p~s~~~~iQr~GRagR~~-~---G~~i~~~~~ 549 (664)
T 1c4o_A 516 ADKEGF----LRSERSLIQTIGRAARNA-R---GEVWLYADR 549 (664)
T ss_dssp TTSCSG----GGSHHHHHHHHGGGTTST-T---CEEEEECSS
T ss_pred CcccCC----CCCHHHHHHHHCccCcCC-C---CEEEEEEcC
Confidence 754311 338999999999999985 3 777766544
No 52
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.70 E-value=1.7e-17 Score=177.91 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcC----CCeEEEe--------cCCCCHHHHHHHHHHhhC-CCCcccEEEEcCccccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRG----KHLCSIV--------YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMG 154 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~i--------hg~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~G 154 (414)
.+.+|||+ ++..++.+++.|...+ . ++..+ ||+|++++|..+++.|++ | +++|||||+++++|
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g--~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFL-KPGILTGRGKTNQNTGMTLPAQKCILDAFKASG--DHNILIATSVADEG 474 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSC-CEEC-------------------------------CCSCSEEEESSCCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCcccc-ceeEEEccCCCccccCCCHHHHHHHHHHHHhcC--CccEEEEechhhcC
Confidence 45677766 9999999999999887 4 67777 569999999999999998 7 89999999999999
Q ss_pred ccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 155 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 155 lnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
||+| ++.||+++.|. ++.+|+||+|| ||.+ . |.++.+...
T Consensus 475 iDip~v~~VI~~d~p~---------s~~~~~Qr~GR-GR~~-~---g~~~~l~~~ 515 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVG---------NVIKMIQTRGR-GRAR-G---SKCFLLTSN 515 (696)
T ss_dssp ---CCCSEEEEESCC-----------CCCC----------C-C---CEEEEEESC
T ss_pred CcCccCCEEEEeCCCC---------CHHHHHHhhcc-CcCC-C---ceEEEEecC
Confidence 9996 99999999987 89999999999 9973 3 666665443
No 53
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.69 E-value=7.5e-17 Score=172.28 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=92.7
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 167 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~ 167 (414)
+.+|||+ |++.++.++..|.+.|. ++.++||++++.+|..+++.|++| +++||||||++++|+|+| ++.||+++.
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~l~~f~~g--~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEIGI-KVNYLHSEIKTLERIEIIRDLRLG--KYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHHT--SCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCC-CeEEEeCCCCHHHHHHHHHHHhcC--CeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 4566666 99999999999999987 899999999999999999999998 899999999999999996 899999997
Q ss_pred cccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC
Q 015049 168 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 208 (414)
Q Consensus 168 ~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~ 208 (414)
+.|.- |.+..+|+||+|||||.+ . |.++.+...
T Consensus 523 d~~G~----p~s~~~~iQr~GRagR~~-~---G~~i~~~~~ 555 (661)
T 2d7d_A 523 DKEGF----LRSERSLIQTIGRAARNA-E---GRVIMYADK 555 (661)
T ss_dssp TCCTT----TTSHHHHHHHHHTTTTST-T---CEEEEECSS
T ss_pred ccccC----CCCHHHHHHHhCcccCCC-C---CEEEEEEeC
Confidence 54321 338999999999999973 3 777766543
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.69 E-value=1.7e-17 Score=179.65 Aligned_cols=95 Identities=18% Similarity=0.387 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHH---cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEccccccCCcc
Q 015049 99 HAIYRLKKAIES---RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVE 174 (414)
Q Consensus 99 ~~~~~l~~~L~~---~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~~~k~dg~~ 174 (414)
+.++.+++.|.+ .+. +++.+||+|++++|..+++.|++| +++|||||+++++|+|+| ++.||+++.++|
T Consensus 597 ~~a~~l~~~L~~~~~~~~-~v~~lHG~m~~~eR~~v~~~F~~G--~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~---- 669 (780)
T 1gm5_A 597 KSAVEMYEYLSKEVFPEF-KLGLMHGRLSQEEKDRVMLEFAEG--RYDILVSTTVIEVGIDVPRANVMVIENPERF---- 669 (780)
T ss_dssp CHHHHHHHSGGGSCC----CBCCCCSSSCCSCSHHHHHHHTTT--SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSS----
T ss_pred HHHHHHHHHHHhhhcCCC-cEEEEeCCCCHHHHHHHHHHHHCC--CCeEEEECCCCCccccCCCCCEEEEeCCCCC----
Confidence 457778888876 233 789999999999999999999998 899999999999999996 999999987753
Q ss_pred cccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 175 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 175 ~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+.+++.||+||+||.|.. |.|+.+..
T Consensus 670 ----~l~~l~Qr~GRaGR~g~~---g~~ill~~ 695 (780)
T 1gm5_A 670 ----GLAQLHQLRGRVGRGGQE---AYCFLVVG 695 (780)
T ss_dssp ----CTTHHHHHHHTSCCSSTT---CEEECCCC
T ss_pred ----CHHHHHHHhcccCcCCCC---CEEEEEEC
Confidence 678999999999999976 88877654
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.69 E-value=1.6e-17 Score=170.10 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=85.6
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEcc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 166 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~~ 166 (414)
.+.+|||. +++.++.+++.| ++.++||++++++|.++++.|++| +++|||||+++++|+|+| ++.||+++
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l------~~~~~~g~~~~~~R~~~~~~F~~g--~~~vLv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVF------LIPAITHRTSREEREEILEGFRTG--RFRAIVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHT------TCCBCCSSSCSHHHHTHHHHHHHS--SCSBCBCSSCCCSSSCSCCBSEEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHh------CcceeeCCCCHHHHHHHHHHHhCC--CCCEEEEcCchhcCcccccCcEEEEEC
Confidence 44566655 899999998877 366799999999999999999998 899999999999999997 99999998
Q ss_pred ccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 167 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 167 ~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
.+. ++.+|.||+|||||.|.+.+..+++.+.
T Consensus 421 ~~~---------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 421 GSG---------SAREYIQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp CSS---------CCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred CCC---------CHHHHHHHHhhccCCCCCCceEEEEEEE
Confidence 776 9999999999999999532345665553
No 56
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.69 E-value=2.3e-17 Score=184.60 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=93.5
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCC------------CCcEEEEecCCChH--HHHHHHHH-cCCceEEeecc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------------ANELHLCGDPAAVP--LIQQILQV-TGDDVKVQSYE 69 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~------------a~~i~l~g~~~~~~--~i~~l~~~-~~~~~~v~~~~ 69 (414)
+.+++++||||||++.+ +|..+..++..+. ..++.+++++.+.+ ....+... ....+.-....
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~ 250 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRIT 250 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEEC
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccC
Confidence 45899999999999985 8888888874432 13445555555443 11122221 11100000000
Q ss_pred cc------CCCcccccccccccccCCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcc
Q 015049 70 RL------SPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 142 (414)
Q Consensus 70 r~------~pl~~~~~~l~~l~~i~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~ 142 (414)
.. .+-.........+... ++.+|||+ |++.++.++..|.+. . ++..+||++. .+++.|++| ++
T Consensus 251 ~~~i~~~~~~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~-~v~~lhg~~~-----~~l~~F~~G--~~ 320 (1054)
T 1gku_B 251 VRNVEDVAVNDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-F-RIGIVTATKK-----GDYEKFVEG--EI 320 (1054)
T ss_dssp CCCEEEEEESCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-S-CEEECTTSSS-----HHHHHHHHT--SC
T ss_pred cCCceEEEechhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-c-CeeEEeccHH-----HHHHHHHcC--CC
Confidence 00 0000001111112222 45677766 999999999999877 4 8999999983 788999998 89
Q ss_pred cEEEE----cCcccccccCC-c-cEEEEcccc
Q 015049 143 DVLVA----SDAIGMGLNLN-I-SRIIFSTMK 168 (414)
Q Consensus 143 ~VLVa----Tdal~~Glnl~-i-~~VI~~~~~ 168 (414)
+|||| ||++++|||+| | +.||+++.|
T Consensus 321 ~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 321 DHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99999 99999999997 4 999999999
No 57
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.68 E-value=5.1e-17 Score=177.26 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=51.2
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc------------CCCeEEEecCCCCHHHHHHHHHHhhC-CCCcccEEEEcCccccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMG 154 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~------------~~~~v~~ihg~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~G 154 (414)
.+.+|||+ +++.++.++..|.+. |. ++..+||++++++|..+++.|++ | +++|||||+++++|
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~-~~~~~hg~~~~~eR~~~l~~F~~~g--~~~vLVaT~~~~~G 707 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR-GRRDQTTGMTLPSQKGVLDAFKTSK--DNRLLIATSVADEG 707 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------------CCSEEEEECC----
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEec-CCcccCCCCCHHHHHHHHHHhhccC--CceEEEEcCchhcC
Confidence 35567766 999999999999874 33 56677999999999999999999 7 89999999999999
Q ss_pred ccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEec
Q 015049 155 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 206 (414)
Q Consensus 155 lnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~ 206 (414)
||+| ++.||+++.|. ++..|+||+|| ||.. . |.++.+.
T Consensus 708 IDlp~v~~VI~yd~p~---------s~~~~iQr~GR-GR~~-~---g~~i~l~ 746 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSG---------NVTKMIQVRGR-GRAA-G---SKCILVT 746 (797)
T ss_dssp ---CCCSEEEEESCCS---------CHHHHHTC---------C---CCEEEEE
T ss_pred CCchhCCEEEEeCCCC---------CHHHHHHhcCC-CCCC-C---ceEEEEE
Confidence 9996 99999999887 99999999999 9983 3 5555553
No 58
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.66 E-value=1.5e-16 Score=178.25 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEE-EecCCCCHHHHHHHHHHhhCCCCcccEEEE----cCcccccccCC--cc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 160 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~-~ihg~L~~e~R~~~~~~F~~g~~~~~VLVa----Tdal~~Glnl~--i~ 160 (414)
++.+|||+ |++.++.++..|...|. .+. .+|| .|.+ ++.|++| +++|||| ||++++|||+| |+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~-~~~~~lhg-----~rr~-l~~F~~G--~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSE-----FEKN-FEDFKVG--KINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTC-CEEESSSS-----HHHH-HHHHHHT--SCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CeeeEecC-----cHHH-HHHHHCC--CCCEEEEecCCCCeeEecCcCCCCCC
Confidence 46677766 99999999999999987 887 8999 2556 9999998 9999999 99999999996 79
Q ss_pred EEEEccccc
Q 015049 161 RIIFSTMKK 169 (414)
Q Consensus 161 ~VI~~~~~k 169 (414)
.||+++.|+
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999999998
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.66 E-value=4.6e-16 Score=164.01 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=84.8
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCC-------CeEEEecCCCCHHHHHHHHHHhhCCCCccc-EEEEcCcccccccCC-c
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNLN-I 159 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~-------~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~-VLVaTdal~~Glnl~-i 159 (414)
+.+|||+ +++.++.+++.|.+.+. ..+..+||+++ ++|..+++.|++|+..++ |||||+++++|+|+| +
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v 518 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTC 518 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTE
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchhe
Confidence 5566655 99999999999976542 13778899976 479999999999832222 888999999999997 9
Q ss_pred cEEEEccccccCCcccccCCHHHHHhhhcccCCCCC--CCCceEEEEec
Q 015049 160 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--KFPVGEVTCLD 206 (414)
Q Consensus 160 ~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~--~~~~G~v~~~~ 206 (414)
+.||+++.++ +...|+||+||+||.+. +...+.|+-+.
T Consensus 519 ~~Vi~~~~~~---------s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 519 KNVVLARVVN---------SMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EEEEEESCCC---------CHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred eEEEEEecCC---------ChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999999887 99999999999999875 22345555554
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.66 E-value=1.6e-16 Score=176.07 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc------------CCCeEEEecCCCCHHHHHHHHHHhhC-CCCcccEEEEcCccccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMG 154 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~------------~~~~v~~ihg~L~~e~R~~~~~~F~~-g~~~~~VLVaTdal~~G 154 (414)
.+.+|||. +++.++.++..|.+. |. .+..+||++++++|.++++.|++ | +++|||||+++++|
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~-~~~~~hg~m~~~eR~~il~~Fr~~g--~~~VLVaT~~~~eG 707 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR-GRRDQTTGMTLPSQKGVLDAFKTSK--DNRLLIATSVADEG 707 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------------CCSEEEEECC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecC-CCcccCCCCCHHHHHHHHHHhhccC--CeeEEEEeCchhcC
Confidence 35566666 999999999999976 33 45667999999999999999998 7 89999999999999
Q ss_pred ccCC-ccEEEEccccccCCcccccCCHHHHHhhhcccCCCC
Q 015049 155 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 194 (414)
Q Consensus 155 lnl~-i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g 194 (414)
||+| ++.||+++.|. ++.+|+||+|| ||.+
T Consensus 708 IDlp~v~~VI~yD~p~---------s~~~~iQr~GR-GR~~ 738 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSG---------NVTKMIQVRGR-GRAA 738 (936)
T ss_dssp --CCCCSEEEEESCCS---------CSHHHHCC--------
T ss_pred CcchhCCEEEEeCCCC---------CHHHHHHhcCC-CCCC
Confidence 9996 99999999887 99999999999 9984
No 61
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.65 E-value=5.4e-16 Score=172.20 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=91.1
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHH-cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC-ccEEEEc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIES-RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~-~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
.+.+|||+ ++..++.++..|.. .|. +++.+||++++++|..+++.|++|++.++|||||+++++|+|+| ++.||++
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~g~-~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~ 581 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLREREGI-RAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMF 581 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTTCC-CEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECS
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEe
Confidence 45566655 89999999999985 466 89999999999999999999999833499999999999999997 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~ 204 (414)
+.|. ++..|.|++||+||.|.. +...++.
T Consensus 582 d~p~---------~~~~~~Q~~GR~~R~Gq~-~~v~v~~ 610 (968)
T 3dmq_A 582 DLPF---------NPDLLEQRIGRLDRIGQA-HDIQIHV 610 (968)
T ss_dssp SCCS---------SHHHHHHHHHTTSCSSSC-SCCEEEE
T ss_pred cCCC---------CHHHHHHHhhccccCCCC-ceEEEEE
Confidence 9886 999999999999999987 3334443
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.58 E-value=9.3e-15 Score=150.62 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=84.4
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCccc-EEEEcCcccccccCC-ccEEEEc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNLN-ISRIIFS 165 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~-VLVaTdal~~Glnl~-i~~VI~~ 165 (414)
..+|||. ++..+..+...|.+. +. .+..+||++++++|.++++.|++|+ ..+ +|+||+++++|+|+| ++.||++
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~~~-~~~~~~g~~~~~~R~~~~~~F~~~~-~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTC-CCCEEETTSCHHHHHHHHHHHHHCT-TCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred CcEEEEEehHHHHHHHHHHHHHhhCC-CeEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEecccccCCCchhhCCEEEEe
Confidence 3456655 899999999999875 66 8899999999999999999999873 344 899999999999996 9999999
Q ss_pred cccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 166 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 166 ~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+.+. ++..+.|++||++|.|+. ....|+.+
T Consensus 420 d~~~---------~~~~~~Q~~gR~~R~Gq~-~~v~v~~l 449 (500)
T 1z63_A 420 DRWW---------NPAVEDQATDRVYRIGQT-RNVIVHKL 449 (500)
T ss_dssp SCCS---------CC---CHHHHTTTTTTTT-SCEEEEEE
T ss_pred CCCC---------CcchHHHHHHHHHHcCCC-CeeEEEEE
Confidence 9876 999999999999999987 34455544
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.49 E-value=3.4e-13 Score=142.14 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=80.5
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC----c-----c
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----I-----S 160 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~----i-----~ 160 (414)
.+|||+ |++.++.+++.|.+.|. ++.++||+....+|..+...|+.| .|+||||++|||+|++ | .
T Consensus 476 pVLVFt~S~e~sE~Ls~~L~~~Gi-~~~vLhgkq~~rE~~ii~~ag~~g----~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 476 PVLVGTTSIEKSELLSSMLKKKGI-PHQVLNAKYHEKEAEIVAKAGQKG----MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTTC-CCEEECSCHHHHHHHHHHHHHSTT----CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCchHHHHHHHHhCCCCC----eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 466655 99999999999999998 899999997777777777778776 5999999999999985 3 4
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCC
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 196 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~ 196 (414)
.||+++.|. +...|.||+|||||.|..
T Consensus 551 hVInte~Pe---------s~r~y~qriGRTGRqG~~ 577 (822)
T 3jux_A 551 CIIGTERHE---------SRRIDNQLRGRAGRQGDP 577 (822)
T ss_dssp EEEESSCCS---------SHHHHHHHHTTSSCSSCC
T ss_pred EEEecCCCC---------CHHHHHHhhCccccCCCC
Confidence 999999998 999999999999999976
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.47 E-value=2.9e-13 Score=144.27 Aligned_cols=104 Identities=24% Similarity=0.288 Sum_probs=89.1
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCc-ccEEEEcCcccccccCC-ccEEEEccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNLN-ISRIIFSTM 167 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~-~~VLVaTdal~~Glnl~-i~~VI~~~~ 167 (414)
.+|||. ++..++.+...|...|. .+..+||++++++|..+++.|++|++. ..+|++|++.|+|||++ +++||+++.
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRY-LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTC-CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC
T ss_pred EEEEEEccHHHHHHHHHHHHHCCC-CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC
Confidence 355554 79999999999998888 899999999999999999999998332 24899999999999995 999999998
Q ss_pred cccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 168 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 168 ~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+. ++..+.|++||++|.|+. ....|+.+
T Consensus 497 ~w---------np~~~~Qa~gR~~R~Gq~-~~v~v~~l 524 (644)
T 1z3i_X 497 DW---------NPANDEQAMARVWRDGQK-KTCYIYRL 524 (644)
T ss_dssp CS---------SHHHHHHHHTTSSSTTCC-SCEEEEEE
T ss_pred CC---------CccHHHHHHHhhhhcCCC-CceEEEEE
Confidence 86 999999999999999987 44555544
No 65
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.46 E-value=1.3e-13 Score=131.68 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=75.9
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc-CCCeEEEecCCCCHHHHHHHHHHhhCCCCccc-EEEEcCcccccccCC-ccEEEE
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNLN-ISRIIF 164 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~-~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~-VLVaTdal~~Glnl~-i~~VI~ 164 (414)
...+|||. ++..++.+...|.+. |. .+..+||++++++|..+++.|++++ ..+ +|++|+++|+|+|++ +++||+
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHCS-CCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEE
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEE
Confidence 34566655 899999999999875 76 8889999999999999999999872 456 799999999999995 999999
Q ss_pred ccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 165 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 165 ~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
++.|. ++..+.|++||++|.|+. ....|+.+
T Consensus 190 ~d~~w---------np~~~~Q~~gR~~R~Gq~-~~v~v~~l 220 (271)
T 1z5z_A 190 FDRWW---------NPAVEDQATDRVYRIGQT-RNVIVHKL 220 (271)
T ss_dssp CSCCS---------CTTTC---------------CCEEEEE
T ss_pred ECCCC---------ChhHHHHHHHhccccCCC-CceEEEEE
Confidence 99886 999999999999999987 33444443
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.44 E-value=1.7e-13 Score=147.00 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCC---------cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---------IS 160 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~---------i~ 160 (414)
.+|||+ |+..++.++..|.+.|. ++.++||++.+.+|..+.+.|+.| .|+||||++|||+|++ +.
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~gi-~~~vLhg~~~~rEr~ii~~ag~~g----~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNKGI-PHQVLNAKNHEREAQIIEEAGQKG----AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTTC-CCEEECSSCHHHHHHHHTTTTSTT----CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred cEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCccHHHHHHHHHcCCCC----eEEEeCCccccCcCccccchhhhcCCc
Confidence 366655 99999999999999998 899999999988888777777765 6999999999999987 55
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+||+++.|. +...|.||+||+||.|.. |...++
T Consensus 509 ~VIn~d~p~---------s~r~y~hr~GRTGRqG~~---G~s~~~ 541 (844)
T 1tf5_A 509 AVVGTERHE---------SRRIDNQLRGRSGRQGDP---GITQFY 541 (844)
T ss_dssp EEEESSCCS---------SHHHHHHHHTTSSGGGCC---EEEEEE
T ss_pred EEEEecCCC---------CHHHHHhhcCccccCCCC---CeEEEE
Confidence 999999998 999999999999999976 664433
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.7e-12 Score=141.64 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=89.5
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCc-ccEEEEcCcccccccCC-ccEEEEccc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNLN-ISRIIFSTM 167 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~-~~VLVaTdal~~Glnl~-i~~VI~~~~ 167 (414)
.+|||. .+..+..+...|...|. .+..+||++++++|..+++.|++|++. .-+|++|+++|.|||++ +++||+++.
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGI-NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTC-CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC
T ss_pred eEEEEechHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecC
Confidence 455555 78899999999998888 899999999999999999999987432 35999999999999996 999999998
Q ss_pred cccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEe
Q 015049 168 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 205 (414)
Q Consensus 168 ~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~ 205 (414)
+. ++..+.|+.||++|.|+. ....|+.+
T Consensus 653 ~w---------np~~~~Qa~gR~~RiGQ~-k~V~Vyrl 680 (800)
T 3mwy_W 653 DW---------NPQADLQAMARAHRIGQK-NHVMVYRL 680 (800)
T ss_dssp CS---------CSHHHHHHHTTTSCSSCC-SCEEEEEE
T ss_pred CC---------ChhhHHHHHHHHHhcCCC-ceEEEEEE
Confidence 76 999999999999999987 44555544
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.34 E-value=2.5e-12 Score=137.79 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=86.6
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCc-------
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI------- 159 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i------- 159 (414)
.|. +|||+ |+..++.+++.|.+.|. ++.++||.....+|..+.+.|+.| .|+||||.+|||+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi-~~~vLnak~~~rEa~iia~agr~G----~VtIATnmAgRGtDI~l~gn~~~~ 514 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGI-KHNVLNAKFHANEAAIVAQAGYPA----AVTIATNMAGRGTDIVLGGSWQAE 514 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTC-CCEECCTTCHHHHHHHHHTTTSTT----CEEEEESCCSSCSCCCTTCCHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHHHHhcCCCC----eEEEecccccCCcCccCCCchHhh
Confidence 444 56655 99999999999999998 899999999988888899999987 59999999999999974
Q ss_pred -------------------------------cEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEE
Q 015049 160 -------------------------------SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 204 (414)
Q Consensus 160 -------------------------------~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~ 204 (414)
-+||.++.|. +...|.||+||+||.|.. |...+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe---------s~riy~qr~GRTGRqGd~---G~s~~ 578 (853)
T 2fsf_A 515 VAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE---------SRRIDNQLRGRSGRQGDA---GSSRF 578 (853)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS---------SHHHHHHHHTTSSGGGCC---EEEEE
T ss_pred hhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC---------CHHHHHhhccccccCCCC---eeEEE
Confidence 4899999888 999999999999999976 65443
No 69
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.28 E-value=8.9e-12 Score=133.90 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCC-EEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCc-------
Q 015049 89 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI------- 159 (414)
Q Consensus 89 ~g~-~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i------- 159 (414)
.|. +|||+ |+..++.++..|.+.|+ ++.++||.....++..+.+.|+.| .|+||||.+|||+||+.
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi-~~~vLnak~~~rEa~iia~agr~G----~VtIATnmAgRGtDI~l~~~~~~~ 533 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRI-PHNVLNAKYHEQEATIIAVAGRRG----GVTVATNMAGRGTDIVLGGNVDFL 533 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTC-CCEEECSSCHHHHHHHHHTTTSTT----CEEEEETTCSTTCCCCTTCCHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHHHHhcCCCC----eEEEecchhhcCccccCCCCHHHH
Confidence 444 66655 99999999999999998 899999999888888888888876 59999999999999973
Q ss_pred ----------------------------------------------cEEEEccccccCCcccccCCHHHHHhhhcccCCC
Q 015049 160 ----------------------------------------------SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193 (414)
Q Consensus 160 ----------------------------------------------~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~ 193 (414)
-+||.++.|. +...|.||.||+||.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe---------s~riy~qr~GRTGRq 604 (922)
T 1nkt_A 534 TDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE---------SRRIDNQLRGRSGRQ 604 (922)
T ss_dssp HHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS---------SHHHHHHHHHTSSGG
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC---------CHHHHHHHhcccccC
Confidence 3899999887 999999999999999
Q ss_pred CCCCCceEEEEe
Q 015049 194 GSKFPVGEVTCL 205 (414)
Q Consensus 194 g~~~~~G~v~~~ 205 (414)
|.. |...++
T Consensus 605 Gdp---G~s~ff 613 (922)
T 1nkt_A 605 GDP---GESRFY 613 (922)
T ss_dssp GCC---EEEEEE
T ss_pred CCC---eeEEEE
Confidence 976 654443
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.18 E-value=2.7e-10 Score=126.57 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCC-CCceEEEEe
Q 015049 127 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCL 205 (414)
Q Consensus 127 ~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~-~~~G~v~~~ 205 (414)
.|..+.++|++| +++|||+||.+.+|+|+|.-.|++++.| ++...|+|++||+||.+.+ .+.|.|+.+
T Consensus 637 ~R~~i~~~Fk~g--~i~ILIvvd~lltGfDiP~l~tlylDkp---------l~~~~liQaIGRtnR~~~~~K~~G~IVdf 705 (1038)
T 2w00_A 637 YYRDLAQRVKNQ--DIDLLIVVGMFLTGFDAPTLNTLFVDKN---------LRYHGLMQAFSRTNRIYDATKTFGNIVTF 705 (1038)
T ss_dssp HHHHHHHHHHTT--SSSEEEESSTTSSSCCCTTEEEEEEESC---------CCHHHHHHHHHTTCCCCCTTCCSEEEEES
T ss_pred HHHHHHHHHHcC--CCeEEEEcchHHhCcCcccccEEEEccC---------CCccceeehhhccCcCCCCCCCcEEEEEc
Confidence 478899999998 9999999999999999984478777754 3889999999999999863 356999988
Q ss_pred cCCCHHHHHHhh
Q 015049 206 DSEDLPLLHKSL 217 (414)
Q Consensus 206 ~~~d~~~l~~~l 217 (414)
.. ....+.+++
T Consensus 706 ~~-~~~~l~~Al 716 (1038)
T 2w00_A 706 RD-LERSTIDAI 716 (1038)
T ss_dssp SC-CHHHHHHHH
T ss_pred cc-cHHHHHHHH
Confidence 65 344444444
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.25 E-value=0.00034 Score=72.57 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEE--EcCcccccccCC-----c
Q 015049 88 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV--ASDAIGMGLNLN-----I 159 (414)
Q Consensus 88 ~~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLV--aTdal~~Glnl~-----i 159 (414)
.+|.++|+| |.+..+.+++.+.. . . ..++|.. ..|..+++.|+++ . .||+ +|+.+..|||+| +
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~-~-~~~q~~~--~~~~~~l~~f~~~--~-~il~~V~~~~~~EGiD~~~~~~~~ 453 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--I-P-VIEENKK--TRHEEVLELMKTG--K-YLVMLVMRAKESEGVEFREKENLF 453 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--S-C-EEESTTT--CCHHHHHHHHHTS--C-CEEEEEC---------------CE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--C-c-eEecCCC--CcHHHHHHHHhcC--C-eEEEEEecCceecceecCCCcccc
Confidence 356677777 89888888877653 2 3 3456654 4688999999986 3 4666 899999999996 6
Q ss_pred cEEEEccccccCCccc---------------------ccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 160 SRIIFSTMKKFDGVEL---------------------RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 160 ~~VI~~~~~k~dg~~~---------------------~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
+.||+.++|....... .+.....+.|-+||+-|...+ .|.|+.++.
T Consensus 454 ~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D--~g~v~llD~ 520 (540)
T 2vl7_A 454 ESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPND--YVKIYLCDS 520 (540)
T ss_dssp EEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTC--CCEEEEESG
T ss_pred cEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCc--cEEEEEEcc
Confidence 7899999885322100 111246788999999998865 588887754
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.15 E-value=0.0068 Score=65.70 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=18.7
Q ss_pred CCHHHHHhhhcccCCCCCCCCceEEE
Q 015049 178 LTVPEVKQIAGRAGRYGSKFPVGEVT 203 (414)
Q Consensus 178 ls~~~~~QraGRAGR~g~~~~~G~v~ 203 (414)
-|..-=.|.-|||||.|.. |....+
T Consensus 670 ESrRIDnQLRGRaGRQGDP-GsSrF~ 694 (997)
T 2ipc_A 670 ESRRIDNQLRGRAGRQGDP-GGSRFY 694 (997)
T ss_dssp SSHHHHHHHHHTSSCSSCC-CEEEEE
T ss_pred chHHHHHHHhcccccCCCC-CCeEEE
Confidence 3777788999999999976 444333
No 73
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.17 E-value=0.0084 Score=53.05 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=39.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH-HcCCce
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDV 63 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~-~~~~~~ 63 (414)
..+++++||||||++.+.+++..+..++..++.....+..+++..+.+++++. .+++++
T Consensus 144 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred cccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 56899999999999998888888888887776433333333344444555554 334433
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.87 E-value=0.011 Score=53.79 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=41.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 59 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~ 59 (414)
..+++++||||||++.+.+++..+..++..++.....+..+++..+.++.++...
T Consensus 169 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp CTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred cccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 4688999999999998888888888888888755444544555555677777653
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.86 E-value=0.012 Score=51.93 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=39.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 59 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~ 59 (414)
+.+++++||||||.+.+..++..+..++..++.....+..+++..+.++++++..
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence 5679999999999998878888888888777654444444444445566666643
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.71 E-value=0.013 Score=53.69 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=43.3
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc-CCceEE
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKV 65 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~-~~~~~v 65 (414)
.+.+++++||||||++.+.+++..+..++..++.....++.+++..+.++.++... .+...+
T Consensus 173 ~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i 235 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 35789999999999999888888888888888655444444444455566666543 443333
No 77
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.54 E-value=0.0098 Score=53.73 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=39.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 58 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~ 58 (414)
+++++++||||||.+.+.+++..+...+..++.....+..+++..+.++.++..
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence 577999999999999988888889988887765444444444444455655554
No 78
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.51 E-value=0.011 Score=55.14 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 58 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~ 58 (414)
.++++++||||||++.+..++..+..++..++.....+..+++..+.++.++..
T Consensus 199 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred cccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 577999999999999988888888888888876554455555555667777764
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.49 E-value=0.016 Score=52.09 Aligned_cols=61 Identities=5% Similarity=-0.027 Sum_probs=40.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEE
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKV 65 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v 65 (414)
..+++++||||||.+.+..++..+...+..++.....+..+++..+.++.++.. +++...+
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i 214 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 467999999999999887788888887776664433333344444445555553 4444444
No 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.40 E-value=0.02 Score=52.78 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=42.3
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEE
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKV 65 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v 65 (414)
+.+++++||||||++.+.+++..+...+..++.....+..+++..+.+++++.. +++...+
T Consensus 184 l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred ccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 567999999999999888888888888888875444444444444556666654 3444433
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.94 E-value=0.029 Score=51.13 Aligned_cols=60 Identities=7% Similarity=-0.042 Sum_probs=39.4
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceE
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVK 64 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~ 64 (414)
+.+++++||||||.+.+..++..+...+..++.....+..+++..+.+++++.. +++...
T Consensus 171 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 171 PKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp STTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred cccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 467999999999999877777777777776764433444444444556666654 344333
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.88 E-value=0.034 Score=50.96 Aligned_cols=55 Identities=13% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhC--CCC--CcEEEEecCCChHHHHHHHHHc
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICA--NELHLCGDPAAVPLIQQILQVT 59 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~--l~a--~~i~l~g~~~~~~~i~~l~~~~ 59 (414)
+.+++++||||||++.+..++..+..++.. ++. ....+..+++..+.+++++...
T Consensus 172 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 172 LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred hhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 567899999999999888888888888774 332 2233344444455566666653
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.86 E-value=0.023 Score=59.85 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC--cccccccCC---ccEE
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN---ISRI 162 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd--al~~Glnl~---i~~V 162 (414)
+|.++|+| |....+.+...+. . . ... ..-+++...|....+.|+ + +--||++|. .+..|||+| .+.|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~-~-~~~-~~q~~~~~~~~~ll~~f~-~--~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-F-E-HMK-EYRGIDQKELYSMLKKFR-R--DHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-S-C-CEE-CCTTCCSHHHHHHHHHHT-T--SCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-h-c-chh-ccCCCChhHHHHHHHHhc-c--CCcEEEEEecCceeccccCCCCceEEE
Confidence 45556655 6666666555543 1 1 111 233344567899999999 5 446999975 999999996 8899
Q ss_pred EEccccccCC----------------ccc-----ccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 163 IFSTMKKFDG----------------VEL-----RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 163 I~~~~~k~dg----------------~~~-----~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
|+.++|-... ... .| ....+.|-+||+=|...+ .|.|+.++.
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D--~G~v~llD~ 583 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAED--TGACVILDK 583 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTC--CEEEEEECG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCc--eEEEEEEcc
Confidence 9999874221 110 01 345678999999998865 698888855
No 84
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.81 E-value=0.029 Score=50.27 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=39.2
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHH-cCCceEE
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKV 65 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~-~~~~~~v 65 (414)
+.+++++||||||.+.+..++..+...+..++.....+..+++..+.++++++. +.+...+
T Consensus 148 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 148 VHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209 (219)
T ss_dssp GGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred cCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEE
Confidence 467899999999999877777888888877764333333333333344555543 3444444
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.61 E-value=0.026 Score=51.15 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=34.5
Q ss_pred CCCcCEEEEecccccCCCC-cchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH
Q 015049 5 VSDYDCAVIDEIQMLGCKT-RGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 57 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~-rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~ 57 (414)
+.+++++||||+|.+.+.+ ++..+..++..++.....+..+++..+.+++++.
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~ 217 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALT 217 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHT
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHH
Confidence 4678999999999998664 7777777777776433333333334444555444
No 86
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.34 E-value=0.035 Score=52.76 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=38.0
Q ss_pred CCCcCEEEEecccccCC-CCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHc
Q 015049 5 VSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 59 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d-~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~ 59 (414)
+.+++++||||||.+.+ ..++..+..++..++.....++.+++..+.+..++...
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 46899999999999986 45555566666666655555555555556677776653
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.90 E-value=0.045 Score=48.88 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=30.9
Q ss_pred CCCcCEEEEecccccCCC-CcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHH
Q 015049 5 VSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 57 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~-~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~ 57 (414)
+.+++++||||||.+.+. .+...+...+..++.....+..+++..+.+++++.
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 568999999999998742 33344555555555433333333333333555554
No 88
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.83 E-value=0.12 Score=46.90 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=34.7
Q ss_pred CCCcCEEEEecccccCCCC---cchhHHHHHhCCCCCcEE-EEecCCChHHHHHHHHHc-CCceEEe
Q 015049 5 VSDYDCAVIDEIQMLGCKT---RGFSFTRALLGICANELH-LCGDPAAVPLIQQILQVT-GDDVKVQ 66 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~---rG~~~~~~l~~l~a~~i~-l~g~~~~~~~i~~l~~~~-~~~~~v~ 66 (414)
+.+++++||||||++.+.. +...+...+..+...... ++.+++..+.++++++.. ++...+.
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 5679999999999997633 223344444444433333 333344444566666643 4444444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=92.18 E-value=0.51 Score=48.65 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecC-CCCHHHHHHHHHHhhCCCCcccEEEEc--CcccccccCC------
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG-SLPPETRTRQATRFNDASSEFDVLVAS--DAIGMGLNLN------ 158 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg-~L~~e~R~~~~~~F~~g~~~~~VLVaT--dal~~Glnl~------ 158 (414)
+|.++|+| |.+..+.+.+. .+. .+ .+.+ +++. ....+.|+..+ . -||+|| ..+..|||+|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~-~v-~~q~~~~~~---~~~~~~~~~~~-~-~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISL-PK-YVESEDSSV---EDLYSAISANN-K-VLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCS-SE-EECCSSCCH---HHHHHHTTSSS-S-CEEEEESSCCSCCSSCCEETTEES
T ss_pred CCCEEEEecCHHHHHHHHHh---cCC-cE-EEcCCCCCH---HHHHHHHHhcC-C-eEEEEEecceecccccccccCCcc
Confidence 45566666 67666666541 222 33 2333 4453 45677775331 3 699998 6999999998
Q ss_pred ccEEEEccccccC----------------Cc-cc-----ccCCHHHHHhhhcccCCCCCCCCceEEEEecC
Q 015049 159 ISRIIFSTMKKFD----------------GV-EL-----RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 207 (414)
Q Consensus 159 i~~VI~~~~~k~d----------------g~-~~-----~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~ 207 (414)
.+.||+.++|... |. .. .| -...+.|-+||+=|...+ .|.|+.++.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D--~G~v~llD~ 530 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVND--KCNVWLLDK 530 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTC--EEEEEEESG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCc--cEEEEEeeh
Confidence 6889998877421 11 11 01 355678999999998865 698888865
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.73 E-value=0.27 Score=44.47 Aligned_cols=54 Identities=7% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCCcCEEEEeccccc-CCCCcch-hHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCC
Q 015049 5 VSDYDCAVIDEIQML-GCKTRGF-SFTRALLGICANELHLCGDPAAVPLIQQILQVTGD 61 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i-~d~~rG~-~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~ 61 (414)
+++++++||||+|.+ .+.+... .+...+...+..++.+++++-+.+. +.++++.
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~---~~~~~~~ 229 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM---FCEYFFN 229 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH---HHHHTTS
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH---HHHHcCC
Confidence 578999999999985 3322221 2233333334344444444444332 5555543
No 91
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.85 E-value=1.2 Score=43.45 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=58.9
Q ss_pred CCCEEE-EecHHHHHHHHHHHHHc---CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc----cccC-Cc
Q 015049 89 TGDCIV-TFSRHAIYRLKKAIESR---GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM----GLNL-NI 159 (414)
Q Consensus 89 ~g~~Iv-~fsr~~~~~l~~~L~~~---~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~----Glnl-~i 159 (414)
.+.++| +.+|.-+.++.+.+.+. +. +++.+||+.+..+|..+.+.+..| ..+|+|+|.-.-. -+++ .+
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~~~~l~~~--~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKV-KIFGFYSSMKKEEKEKFEKSFEED--DYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSC-CEEECCTTSCHHHHHHHHHHHHHT--CCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCc-eEEEEECCCChhhHHHHHHHhhcC--CCCEEEECHHHHHHHHHHhccccc
Confidence 344555 44999999999999884 44 899999999999999999999887 6899999985321 1334 58
Q ss_pred cEEEEccc
Q 015049 160 SRIIFSTM 167 (414)
Q Consensus 160 ~~VI~~~~ 167 (414)
+.||+-..
T Consensus 141 ~~iViDEa 148 (414)
T 3oiy_A 141 DFVFVDDV 148 (414)
T ss_dssp SEEEESCH
T ss_pred cEEEEeCh
Confidence 88888665
No 92
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.85 E-value=1.6 Score=47.07 Aligned_cols=78 Identities=10% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-ccccC-CccEE
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL-NISRI 162 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-~Glnl-~i~~V 162 (414)
+.+++.. |+.-+.+..+.+.+. +. +++.+||+++...|..+.+.+.+| ..+|+|+|...- ..+++ ++..|
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi-~v~~l~G~~~~~~r~~~~~~l~~g--~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNI-HVALLIGATTPSEKEKIKSGLRNG--QIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSC-CEEECCSSSCHHHHHHHHHHHHSS--CCCEEEECTTHHHHCCCCSCCCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCc-eEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHhhhhhccCCceE
Confidence 3455544 998888888777654 44 899999999999999999999998 889999998643 33566 58888
Q ss_pred EEcccccc
Q 015049 163 IFSTMKKF 170 (414)
Q Consensus 163 I~~~~~k~ 170 (414)
|+-....|
T Consensus 495 VIDEaHr~ 502 (780)
T 1gm5_A 495 IIDEQHRF 502 (780)
T ss_dssp EEESCCCC
T ss_pred Eecccchh
Confidence 88776654
No 93
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=86.13 E-value=0.42 Score=44.44 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.9
Q ss_pred cCCCcCEEEEecccccCCCCcchhHHHHHhCCCC
Q 015049 4 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 37 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a 37 (414)
...+++++||||||.+.+ ..+..++..+..
T Consensus 222 ~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 222 WFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp GGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred HHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 457899999999999973 367777776643
No 94
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=80.36 E-value=0.67 Score=40.51 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=10.8
Q ss_pred CCCcCEEEEecccccCC
Q 015049 5 VSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d 21 (414)
..+++++||||||++.+
T Consensus 160 ~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 160 LSDFSLIIIDECHHTNK 176 (216)
T ss_dssp GGGCSEEEETTC-----
T ss_pred hhcccEEEEECchhhcc
Confidence 56889999999999974
No 95
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.64 E-value=3.5 Score=46.15 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=58.8
Q ss_pred CCEEE-EecHHHHHHHHHHHHHcC--CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc----cccC-CccE
Q 015049 90 GDCIV-TFSRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM----GLNL-NISR 161 (414)
Q Consensus 90 g~~Iv-~fsr~~~~~l~~~L~~~~--~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~----Glnl-~i~~ 161 (414)
+.+|| +.||.-+.++.+.+.+.+ ...++.+||+.+..+|..+.+.+.+| ..+|+|+|.-.-. -+++ .++.
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g--~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS--CCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred CeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC--CCCEEEECHHHHHHHHHhhcccCcCE
Confidence 44555 449999999999998833 12799999999999999999999987 7899999974221 1344 5888
Q ss_pred EEEcccc
Q 015049 162 IIFSTMK 168 (414)
Q Consensus 162 VI~~~~~ 168 (414)
||+-...
T Consensus 200 lViDEaH 206 (1104)
T 4ddu_A 200 VFVDDVD 206 (1104)
T ss_dssp EEESCHH
T ss_pred EEEeCCC
Confidence 8886653
No 96
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=76.57 E-value=6 Score=41.02 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-c----------ccccc
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-I----------GMGLN 156 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-l----------~~Gln 156 (414)
+|.+||+. ++.-+.+....|.+.|. .++.++|+++.+++..+...+....+..+|+|+|.- + ....+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGI-SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTC-CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCC-cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 45566655 89999999999998887 899999999999999998888432238899999983 1 11122
Q ss_pred C-CccEEEEcccc
Q 015049 157 L-NISRIIFSTMK 168 (414)
Q Consensus 157 l-~i~~VI~~~~~ 168 (414)
+ ++..||+-...
T Consensus 163 ~~~i~~iViDEAH 175 (591)
T 2v1x_A 163 ARRFTRIAVDEVH 175 (591)
T ss_dssp TTCEEEEEEETGG
T ss_pred ccCCcEEEEECcc
Confidence 3 47778775544
No 97
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=73.61 E-value=7.2 Score=39.63 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=58.5
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc------ccccC-CccE
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG------MGLNL-NISR 161 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~------~Glnl-~i~~ 161 (414)
|.+||+. ++.-+.+....|.+.+. .+..+||+.+.+++..+...+..| ..+++++|.--- ..++. ++..
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi-~~~~l~~~~~~~~~~~~~~~~~~~--~~~ilv~Tpe~l~~~~~~~~l~~~~~~~ 142 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGV-AAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHHT--CCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHhChHHHHHHhhCCCCE
Confidence 4455544 89999999999998887 899999999999999999988887 889999996321 11232 4777
Q ss_pred EEEccccc
Q 015049 162 IIFSTMKK 169 (414)
Q Consensus 162 VI~~~~~k 169 (414)
||+-....
T Consensus 143 vViDEaH~ 150 (523)
T 1oyw_A 143 LAVDEAHC 150 (523)
T ss_dssp EEESSGGG
T ss_pred EEEeCccc
Confidence 77755443
No 98
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=66.85 E-value=14 Score=41.42 Aligned_cols=78 Identities=9% Similarity=0.174 Sum_probs=58.6
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-cccccC-CccEEEE
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-GMGLNL-NISRIIF 164 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-~~Glnl-~i~~VI~ 164 (414)
.++|.. |+.-+.+..+.+.+.. ..+++.++|..+...+..+.+...+| ..+|+|+|..+ ...+++ .+..||+
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g--~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG--KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT--CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHhCCccccccceEEE
Confidence 445544 9988888888877532 13789999999999999999999998 88999999643 444666 4778887
Q ss_pred cccccc
Q 015049 165 STMKKF 170 (414)
Q Consensus 165 ~~~~k~ 170 (414)
-....|
T Consensus 732 DEaH~~ 737 (1151)
T 2eyq_A 732 DEEHRF 737 (1151)
T ss_dssp ESGGGS
T ss_pred echHhc
Confidence 665554
No 99
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=59.99 E-value=33 Score=29.58 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=49.6
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----cc-cccC-C
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----GM-GLNL-N 158 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~~-Glnl-~ 158 (414)
.++|.. ++.-+.++.+.+.+.. ...++.++|+.+...+... +.++ ..+|+|+|.-. .. .+++ .
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~--~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN--CPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHS--CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcC--CCCEEEeCHHHHHHHHHhCCCCccc
Confidence 455554 9999999888887652 3378999999987665443 3334 56899999632 12 2445 4
Q ss_pred ccEEEEccccc
Q 015049 159 ISRIIFSTMKK 169 (414)
Q Consensus 159 i~~VI~~~~~k 169 (414)
++.||+-....
T Consensus 159 ~~~lViDEah~ 169 (220)
T 1t6n_A 159 IKHFILDECDK 169 (220)
T ss_dssp CCEEEEESHHH
T ss_pred CCEEEEcCHHH
Confidence 77888765443
No 100
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.28 E-value=39 Score=29.84 Aligned_cols=72 Identities=15% Similarity=0.317 Sum_probs=47.7
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL- 157 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl- 157 (414)
+.+||.. ||.-+.++.+.+.+. +. .+..+||+.+......... + ..+|+|+|. .+..+ +++
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRL-KSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCc-eEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHHHHHcCCCCcc
Confidence 3455544 999888887766653 44 7889999999876554443 3 358999995 33322 345
Q ss_pred CccEEEEcccc
Q 015049 158 NISRIIFSTMK 168 (414)
Q Consensus 158 ~i~~VI~~~~~ 168 (414)
.++.||+-...
T Consensus 176 ~~~~lViDEah 186 (242)
T 3fe2_A 176 RTTYLVLDEAD 186 (242)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeCHH
Confidence 47788775543
No 101
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=54.25 E-value=32 Score=30.32 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-ccC-C
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNL-N 158 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-lnl-~ 158 (414)
..+||.. +|.-+.++.+.+.+.+ ...+...+|+.+... ..+.+..+ ..+|+|+|. .+..+ +++ .
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~--~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAE--APHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcC--CCCEEEECHHHHHHHHHhCCcCccc
Confidence 3556554 9999999988887654 236777888876443 33344444 578999993 34443 445 4
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 174 ~~~lViDEah 183 (237)
T 3bor_A 174 IKMFVLDEAD 183 (237)
T ss_dssp CCEEEEESHH
T ss_pred CcEEEECCch
Confidence 7888875543
No 102
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=53.23 E-value=38 Score=29.64 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=48.4
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc------ccccC-
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG------MGLNL- 157 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~------~Glnl- 157 (414)
..+||.. ++.-+.++.+.+.+.+ ..++.+++|+.+...+... ++ +.+|+|+|.--- ..+++
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---LK----KCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---TT----SCSEEEECHHHHHHHHHTTSSCGG
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---cc----CCCEEEECHHHHHHHHhcCCcccc
Confidence 3455554 9999999988887753 2378899999987765443 22 458999997421 12344
Q ss_pred CccEEEEccccc
Q 015049 158 NISRIIFSTMKK 169 (414)
Q Consensus 158 ~i~~VI~~~~~k 169 (414)
.++.||+-....
T Consensus 166 ~~~~lViDEah~ 177 (230)
T 2oxc_A 166 SIRLFILDEADK 177 (230)
T ss_dssp GCCEEEESSHHH
T ss_pred cCCEEEeCCchH
Confidence 377777755443
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=52.27 E-value=77 Score=30.12 Aligned_cols=89 Identities=11% Similarity=-0.097 Sum_probs=48.6
Q ss_pred CCCEEEEe--cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccccccc-----C-Ccc
Q 015049 89 TGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN-----L-NIS 160 (414)
Q Consensus 89 ~g~~Iv~f--sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Gln-----l-~i~ 160 (414)
.|.-|+.| ..+...-+-..+...+. +..=+-|+.... +.+. .+. .+.+.+.|.+.+-|+| + +.+
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~-~y~RlDG~~~~~-~~k~----~~~--~~~i~Lltsag~~gin~~~~nl~~aD 195 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKV-HIKRYDGHSIKS-AAAA----NDF--SCTVHLFSSEGINFTKYPIKSKARFD 195 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSC-EEEESSSCCC------------CC--SEEEEEEESSCCCTTTSCCCCCSCCS
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCC-ceEeCCCCchhh-hhhc----ccC--CceEEEEECCCCCCcCcccccCCCCC
Confidence 34444444 55666666666666665 777777874432 2111 122 5566666777777886 4 588
Q ss_pred EEEEccccccCCcccccCCHHHHHhhhcccCCC
Q 015049 161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 193 (414)
Q Consensus 161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~ 193 (414)
.||.++.. ||.. .+.+|..-|+-|.
T Consensus 196 ~VI~~Dsd-wNp~-------~d~iQa~~r~~R~ 220 (328)
T 3hgt_A 196 MLICLDTT-VDTS-------QKDIQYLLQYKRE 220 (328)
T ss_dssp EEEECSTT-CCTT-------SHHHHHHHCCC--
T ss_pred EEEEECCC-CCCC-------ChHHHHHHHHhhh
Confidence 99988744 3321 2246655565555
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=50.16 E-value=14 Score=31.77 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=22.1
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCC
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 48 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~ 48 (414)
++++++|||||.+. ++.-..+....-. ...+.+.|..+.
T Consensus 76 ~~dvviIDE~Q~~~-~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFN-PSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSC-TTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCEEEEECcccCC-HHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 57899999999974 2222222222111 345666677544
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=50.07 E-value=15 Score=38.09 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=28.8
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCC-CcEEEEecCCChHH
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPL 51 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a-~~i~l~g~~~~~~~ 51 (414)
+++++||||++|+. ...+..++..++. .++.++|+..-.+-
T Consensus 262 ~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred CCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcchhhcCC
Confidence 68999999999875 2344555656654 57888898765543
No 106
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=48.58 E-value=56 Score=29.06 Aligned_cols=71 Identities=13% Similarity=0.352 Sum_probs=46.7
Q ss_pred CEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cc--ccccC-
Q 015049 91 DCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IG--MGLNL- 157 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~--~Glnl- 157 (414)
.+||.. +|.-+.++.+.+.+. +. .++.++|+.+...+... ... ..+|+|+|.- +. .++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~---~~~---~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGV-QSAVIVGGIDSMSQSLA---LAK---KPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTC-CEEEECTTSCHHHHHHH---HHT---CCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCe-eEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHHHHHcCCCcCcc
Confidence 455544 999999888877654 44 78899999886654333 333 5689999963 21 23455
Q ss_pred CccEEEEcccc
Q 015049 158 NISRIIFSTMK 168 (414)
Q Consensus 158 ~i~~VI~~~~~ 168 (414)
.++.||+-...
T Consensus 186 ~~~~lViDEah 196 (249)
T 3ber_A 186 ALKYLVMDEAD 196 (249)
T ss_dssp TCCEEEECSHH
T ss_pred ccCEEEEcChh
Confidence 47777775443
No 107
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=48.04 E-value=41 Score=29.43 Aligned_cols=72 Identities=11% Similarity=0.281 Sum_probs=44.5
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----cc--cccC-
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----GM--GLNL- 157 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~---~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~~--Glnl- 157 (414)
..++|.. |+.-+.++.+.+.+.+. ..+..+||+.+....... +. ..+|+|+|.-. .. .+++
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---IN----NINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---HT----TCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---CC----CCCEEEECHHHHHHHHHhcCCcccc
Confidence 3455544 99999999988887542 378889999876544333 22 45899999631 12 2444
Q ss_pred CccEEEEcccc
Q 015049 158 NISRIIFSTMK 168 (414)
Q Consensus 158 ~i~~VI~~~~~ 168 (414)
.++.||+-...
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 46777765443
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=44.50 E-value=21 Score=31.85 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=21.4
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEec
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 45 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~ 45 (414)
++++|+|||+|.+..... ..+..+ .. ...++.+.|.
T Consensus 101 ~~dvViIDEaQF~~~~~V-~~l~~l-~~-~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIV-EVVQVL-AN-RGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTHH-HHHHHH-HH-TTCEEEEEEC
T ss_pred CCCEEEEECcccCCHHHH-HHHHHH-hh-CCCEEEEEec
Confidence 589999999999853322 222221 11 2346677776
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=44.41 E-value=19 Score=37.04 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=26.2
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCC-CCcEEEEecCCC
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 48 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-a~~i~l~g~~~~ 48 (414)
.++++||||++|+.. ..+..++..++ ...+.++|+..-
T Consensus 279 ~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVLLVGDTDQ 317 (574)
T ss_dssp SCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEEEEECTTS
T ss_pred cCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEEEEecccc
Confidence 689999999999862 23444454454 356788887754
No 110
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.11 E-value=36 Score=36.70 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=37.3
Q ss_pred CCEEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 90 GDCIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 90 g~~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
+-.|++.||.-+.+.++.+.. .|. ++++++||++++.|.... ..+|+|+|+.
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl-~v~~i~GG~~~~~r~~~~--------~~dIvvgTpg 172 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGL-TVGINLPGMPAPAKREAY--------AADITYGTNN 172 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTC-CEEECCTTCCHHHHHHHH--------HSSEEEEEHH
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCC-eEEEEeCCCCHHHHHHhc--------CCCEEEECCc
Confidence 345667799888777665543 455 899999999987655432 3579999974
No 111
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=44.11 E-value=67 Score=27.10 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=46.2
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cccc-ccC-C
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMG-LNL-N 158 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~G-lnl-~ 158 (414)
.+|+.. ++.-+.++.+.+.+.. ...+..++|+.+..... ..+.. ..+|+|+|.- +..| +++ .
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~---~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLDD---TVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTTS---CCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcCC---CCCEEEeCHHHHHHHHHcCCcCccc
Confidence 455544 9999998888887642 34788899998866433 23333 5689999973 2222 234 3
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 6777765544
No 112
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=43.40 E-value=1.1e+02 Score=27.44 Aligned_cols=73 Identities=10% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----cccc--cccC-
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGM--GLNL- 157 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~--Glnl- 157 (414)
..+|+.. ||.-+.++.+.+.+.+ ...++.++|+.+....... +.. ..+|+|+|. .+.. ++++
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN---GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH---CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC---CCCEEEEcHHHHHHHHHccCCcccc
Confidence 3455544 9999999988887643 2367888999886654433 333 368999994 2222 3555
Q ss_pred CccEEEEcccc
Q 015049 158 NISRIIFSTMK 168 (414)
Q Consensus 158 ~i~~VI~~~~~ 168 (414)
.++.||+-...
T Consensus 201 ~l~~lViDEah 211 (262)
T 3ly5_A 201 NLQCLVIDEAD 211 (262)
T ss_dssp TCCEEEECSHH
T ss_pred cCCEEEEcChH
Confidence 47888875543
No 113
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=42.89 E-value=73 Score=29.81 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=49.9
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC----CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc------ccccC-C
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG------MGLNL-N 158 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~----~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~------~Glnl-~ 158 (414)
.+||+. ++.-+.++.+.+.+.. ..++..++|+.+....... +..+ ..+|+|+|.-.- ..+++ .
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~--~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN--CPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHS--CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcC--CCCEEEECHHHHHHHHHcCCccccc
Confidence 455544 9999999888887652 3378999999987765443 3334 568999996322 12445 4
Q ss_pred ccEEEEccccc
Q 015049 159 ISRIIFSTMKK 169 (414)
Q Consensus 159 i~~VI~~~~~k 169 (414)
++.||+-....
T Consensus 153 ~~~vViDEaH~ 163 (391)
T 1xti_A 153 IKHFILDECDK 163 (391)
T ss_dssp CSEEEECSHHH
T ss_pred cCEEEEeCHHH
Confidence 88888766554
No 114
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=42.06 E-value=37 Score=36.65 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=36.0
Q ss_pred EEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 92 CIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
.|++.||.-|.+.++.+.. .|. ++++++|+++++.|.... ..+|+|+|+
T Consensus 128 lVltptreLA~qd~e~~~~l~~~lgl-~v~~i~gg~~~~~r~~~~--------~~dIv~gTp 180 (844)
T 1tf5_A 128 HVVTVNEYLASRDAEQMGKIFEFLGL-TVGLNLNSMSKDEKREAY--------AADITYSTN 180 (844)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTC-CEEECCTTSCHHHHHHHH--------HSSEEEEEH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHhc--------CCCEEEECc
Confidence 4556699888877665543 455 899999999988765542 347999997
No 115
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.03 E-value=1.2e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=36.1
Q ss_pred EEEEe-c-HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCC
Q 015049 92 CIVTF-S-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 138 (414)
Q Consensus 92 ~Iv~f-s-r~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g 138 (414)
+.++| | ..-..++.+.+...|. ++..+|++.....|.+-++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHHHHHHHHHHHHHc
Confidence 34455 4 4444567777888887 999999999999999999999875
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=41.61 E-value=20 Score=32.45 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=23.2
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 46 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~ 46 (414)
.++++|+|||+|.+.+ -..+...+.. ...++.+.|..
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~-~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN-AGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH-TTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh-CCCEEEEEecc
Confidence 4689999999999862 2333333333 23456666665
No 117
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=40.06 E-value=31 Score=38.32 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=43.2
Q ss_pred CCEEE-EecHHHHHHHHHHHHHcC---CC----eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC
Q 015049 90 GDCIV-TFSRHAIYRLKKAIESRG---KH----LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 149 (414)
Q Consensus 90 g~~Iv-~fsr~~~~~l~~~L~~~~---~~----~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd 149 (414)
+.++| +.||.-+.++.+.+.+.+ .. .++.+||+.+...+..+.+.+++ .+|+|+|+
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP 163 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTT 163 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEH
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcH
Confidence 44555 449999999888887643 22 68899999999988888777764 47999996
No 118
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=38.73 E-value=50 Score=28.66 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC--CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----ccc-cccC-Cc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGM-GLNL-NI 159 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~--~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~-Glnl-~i 159 (414)
..+||.. ||.-+.++.+.+.+.. ...+..++|+.+...+. +.+.+ ..+|+|+|.- +.. .+++ .+
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK---GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS---CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC---CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3455544 9999999999888742 23788889988765433 33344 4689999962 111 3445 47
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 777775543
No 119
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.48 E-value=25 Score=34.86 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=26.0
Q ss_pred CCCcCEEEEecccccCCCCcchhHHHHHhCCC-CCcEEEEecCCC
Q 015049 5 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 48 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~-a~~i~l~g~~~~ 48 (414)
...++++||||+|++.. ..+..++..++ ...+.++|+..-
T Consensus 126 ~~~~~~iiiDE~~~~~~----~~~~~l~~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDR----KLFKILLSTIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp CSSCSEEEESCGGGCCH----HHHHHHHHHSCTTCEEEEEECTTS
T ss_pred ccCCCEEEEECchhCCH----HHHHHHHHhccCCCEEEEECCHHH
Confidence 45789999999999852 12333333333 456788887755
No 120
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=37.01 E-value=12 Score=38.26 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=15.8
Q ss_pred CCcCEEEEecccccCCCCcc
Q 015049 6 SDYDCAVIDEIQMLGCKTRG 25 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG 25 (414)
...+++||||||.+.| -+.
T Consensus 172 ~~~~~vIiDEAHnl~d-~~~ 190 (551)
T 3crv_A 172 LREYMIVIDEAHNLDK-VNE 190 (551)
T ss_dssp STTEEEEETTGGGGGG-GGG
T ss_pred cCCeEEEEecccchHH-HHH
Confidence 4677899999999997 654
No 121
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=35.82 E-value=54 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=35.7
Q ss_pred EEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 92 CIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 92 ~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
.|++.|+.-+.+.++.+.. .|. .|++++|+++++.|.... ..+|+++|+.
T Consensus 156 ~VvTpTreLA~Qdae~m~~l~~~lGL-sv~~i~gg~~~~~r~~~y--------~~DIvygTpg 209 (922)
T 1nkt_A 156 HIVTVNDYLAKRDSEWMGRVHRFLGL-QVGVILATMTPDERRVAY--------NADITYGTNN 209 (922)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTC-CEEECCTTCCHHHHHHHH--------HSSEEEEEHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHhc--------CCCEEEECch
Confidence 4556688877766655543 455 899999999988766543 2479999973
No 122
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=35.74 E-value=85 Score=29.95 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCC---eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc------cccC-C
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKH---LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM------GLNL-N 158 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~---~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~------Glnl-~ 158 (414)
+.++|+. ++.-+.++.+.+.+.... .+..+||+.+...+.... . ..+|+|+|.-.-. .+++ .
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW---A----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH---H----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc---c----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 3455544 899999999999876433 789999999988665433 2 3479999963222 2344 4
Q ss_pred ccEEEEcccccc
Q 015049 159 ISRIIFSTMKKF 170 (414)
Q Consensus 159 i~~VI~~~~~k~ 170 (414)
++.||+-.....
T Consensus 126 ~~~vIiDEaH~~ 137 (494)
T 1wp9_A 126 VSLIVFDEAHRA 137 (494)
T ss_dssp CSEEEEETGGGC
T ss_pred ceEEEEECCccc
Confidence 888888666554
No 123
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.59 E-value=80 Score=27.80 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-----c-cccC-C
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-----M-GLNL-N 158 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-----~-Glnl-~ 158 (414)
..+||.. ||.-+.++.+.+.+.+ ...+..++|+.+...... .... ..+|+|+|.-.- . .+++ .
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQM---GCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSS---CCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCC---CCCEEEECHHHHHHHHHcCCCChhh
Confidence 3556654 9999999888877643 236788899987654433 3333 568999997422 1 2345 3
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 175 ~~~lViDEah 184 (253)
T 1wrb_A 175 CKYIVLDEAD 184 (253)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEeCHH
Confidence 6777765543
No 124
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=35.49 E-value=1.1e+02 Score=25.78 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCC-CeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cccc-ccC-Ccc
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMG-LNL-NIS 160 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~-~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~G-lnl-~i~ 160 (414)
..+++.. ++.-+.++.+.+.+... .++..+||+.+........ .. ..+|+|+|.- +..+ +++ .++
T Consensus 73 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 73 PRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR---GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH---CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC---CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3455544 99999999998887642 3688889998765443332 22 3579999962 2222 344 377
Q ss_pred EEEEcccc
Q 015049 161 RIIFSTMK 168 (414)
Q Consensus 161 ~VI~~~~~ 168 (414)
.||+-...
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 77775543
No 125
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=34.47 E-value=78 Score=30.76 Aligned_cols=73 Identities=10% Similarity=0.207 Sum_probs=49.1
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cccc-ccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMG-LNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~G-lnl-~i 159 (414)
.+||.. ||.-+.++.+.+.+.+ ..+++++||+.+...+.. .... ..+|+|+|.- +..| +++ .+
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEEEChHHHHHHHHhCCcccccC
Confidence 456544 9999999988887644 236888999998765433 3333 4689999963 3333 345 48
Q ss_pred cEEEEccccc
Q 015049 160 SRIIFSTMKK 169 (414)
Q Consensus 160 ~~VI~~~~~k 169 (414)
+.||+-....
T Consensus 205 ~~lVlDEah~ 214 (434)
T 2db3_A 205 RFVVLDEADR 214 (434)
T ss_dssp CEEEEETHHH
T ss_pred CeEEEccHhh
Confidence 8888765443
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=34.21 E-value=19 Score=32.38 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.5
Q ss_pred CCCcCEEEEecccccCC
Q 015049 5 VSDYDCAVIDEIQMLGC 21 (414)
Q Consensus 5 ~~~v~~vVIDE~h~i~d 21 (414)
..++++|.|||||.+.+
T Consensus 99 ~~~~dvV~IDEaQFf~~ 115 (219)
T 3e2i_A 99 LTNVDVIGIDEVQFFDD 115 (219)
T ss_dssp CTTCSEEEECCGGGSCT
T ss_pred hcCCCEEEEechhcCCH
Confidence 36789999999999874
No 127
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=32.94 E-value=79 Score=34.59 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCEEEEecHHHHHHHHHHHHH----cCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc
Q 015049 90 GDCIVTFSRHAIYRLKKAIES----RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 150 (414)
Q Consensus 90 g~~Iv~fsr~~~~~l~~~L~~----~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda 150 (414)
+-.|++.|+.-+.+.+..+.. .|. .|++++|+++++.|.... .++|+|+|+.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lGL-sv~~i~Gg~~~~~r~~ay--------~~DIvyGTpg 177 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLGL-SVGVIQHASTPAERRKAY--------LADVTYVTNS 177 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTTC-CEEECCTTCCHHHHHHHH--------TSSEEEEEHH
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcCC-eEEEEeCCCCHHHHHHHc--------CCCEEEECch
Confidence 345667798777766655543 455 899999999988776653 3579999974
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.49 E-value=15 Score=32.31 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=11.5
Q ss_pred cCEEEEecccccC
Q 015049 8 YDCAVIDEIQMLG 20 (414)
Q Consensus 8 v~~vVIDE~h~i~ 20 (414)
-.++||||||.+.
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 5789999999984
No 129
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=31.45 E-value=18 Score=31.48 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred CcCEEEEecccccC
Q 015049 7 DYDCAVIDEIQMLG 20 (414)
Q Consensus 7 ~v~~vVIDE~h~i~ 20 (414)
++++|+|||+|.+.
T Consensus 81 ~~dvViIDEaqfl~ 94 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD 94 (191)
T ss_dssp TCSEEEECSGGGSC
T ss_pred cCCEEEEECCCCCC
Confidence 58999999999975
No 130
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.41 E-value=19 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.435 Sum_probs=12.9
Q ss_pred CCcCEEEEecccccC
Q 015049 6 SDYDCAVIDEIQMLG 20 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~ 20 (414)
.++++|||||+|.+.
T Consensus 88 ~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 88 DETKVIGIDEVQFFD 102 (223)
T ss_dssp TTCCEEEECSGGGSC
T ss_pred CCCCEEEEecCccCc
Confidence 358999999999875
No 131
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=31.05 E-value=67 Score=31.84 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccc-----c-c-c
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM-----G-L-N 156 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~-----G-l-n 156 (414)
.+.+||.. ++.-+.++.+.+.+. +. .+..+||+.+...+.... .. ..+|+|+|.-.-. | + +
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~~~~~~~~~~ 127 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGY-SVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVNSFEDGTLTS 127 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTC-CEEECCCC-----CHHHH---HH---HCSEEEECHHHHHHHHHSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCc-eEEEEeCCCCcchhHHHh---hC---CCCEEEECHHHHHHHHHhCcccc
Confidence 34455544 999998888888764 55 899999999766543322 22 3579999974322 2 3 4
Q ss_pred C-CccEEEEccccccC
Q 015049 157 L-NISRIIFSTMKKFD 171 (414)
Q Consensus 157 l-~i~~VI~~~~~k~d 171 (414)
+ .++.||+-......
T Consensus 128 ~~~~~~vViDEah~~~ 143 (556)
T 4a2p_A 128 LSIFTLMIFDECHNTT 143 (556)
T ss_dssp STTCSEEEEETGGGCS
T ss_pred cccCCEEEEECCcccC
Confidence 4 48888887665543
No 132
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=31.04 E-value=15 Score=37.46 Aligned_cols=17 Identities=29% Similarity=0.126 Sum_probs=14.3
Q ss_pred cCCCcCEEEEecccccC
Q 015049 4 VVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~ 20 (414)
++...+++||||||.+.
T Consensus 172 ~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 172 LKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CCGGGEEEEETTGGGGG
T ss_pred cCcCCCEEEEEccccHH
Confidence 45678899999999994
No 133
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.89 E-value=85 Score=33.32 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----ccc-c-c
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----GMG-L-N 156 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~~G-l-n 156 (414)
.+.+||+. ++.-+.++...+.+. +. +++.+||+.+...+.... .. ..+|+|+|.-. ..| + .
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~~---~~---~~~Ivv~Tp~~l~~~l~~~~~~~ 368 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGY-SVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVNSFEDGTLTS 368 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTC-CEEEECCC-----CHHHH---HH---TCSEEEECHHHHHHHHHSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCc-eEEEEeCCcchhhhHHHh---hC---CCCEEEEchHHHHHHHHhccccc
Confidence 44566644 898888888877764 55 899999999766543322 22 45799999632 222 2 3
Q ss_pred C-CccEEEEcccccc
Q 015049 157 L-NISRIIFSTMKKF 170 (414)
Q Consensus 157 l-~i~~VI~~~~~k~ 170 (414)
+ .++.||+-.....
T Consensus 369 ~~~~~~iViDEaH~~ 383 (797)
T 4a2q_A 369 LSIFTLMIFDECHNT 383 (797)
T ss_dssp GGGCSEEEETTGGGC
T ss_pred cccCCEEEEECcccc
Confidence 4 3788888665543
No 134
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=28.82 E-value=43 Score=33.32 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=27.3
Q ss_pred CcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChH
Q 015049 7 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 50 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~ 50 (414)
.++++||||+.|+. .|.. ..++..+++..+.++|++.-.+
T Consensus 234 ~~d~liiDE~sm~~---~~~l-~~l~~~~~~~~vilvGD~~Qlp 273 (446)
T 3vkw_A 234 QFKRLFIDEGLMLH---TGCV-NFLVEMSLCDIAYVYGDTQQIP 273 (446)
T ss_dssp CCSEEEEETGGGSC---HHHH-HHHHHHTTCSEEEEEECTTSCC
T ss_pred cCCEEEEeCcccCC---HHHH-HHHHHhCCCCEEEEecCccccc
Confidence 38999999999883 3332 2233335567889999886554
No 135
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=27.97 E-value=63 Score=31.92 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=49.7
Q ss_pred CCCEEEEe-cHHHHHHHHHHHHHc----CCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCccc-----cc-c-c
Q 015049 89 TGDCIVTF-SRHAIYRLKKAIESR----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-----MG-L-N 156 (414)
Q Consensus 89 ~g~~Iv~f-sr~~~~~l~~~L~~~----~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~-----~G-l-n 156 (414)
.+.+||+. ++.-+.++.+.+.+. +. .+..+||+.+...+.... .. ..+|+|+|.-.- .| + +
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~~~~~~~~~~ 124 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGY-NIASISGATSDSVSVQHI---IE---DNDIIILTPQILVNNLNNGAIPS 124 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTC-CEEEECTTTGGGSCHHHH---HH---HCSEEEECHHHHHHHHHTSSSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCc-EEEEEcCCCcchhhHHHH---hc---CCCEEEECHHHHHHHHhcCcccc
Confidence 34455544 999888888877764 55 899999999765543322 22 357999997432 22 2 3
Q ss_pred C-CccEEEEccccccCC
Q 015049 157 L-NISRIIFSTMKKFDG 172 (414)
Q Consensus 157 l-~i~~VI~~~~~k~dg 172 (414)
+ .++.||+-......+
T Consensus 125 ~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 125 LSVFTLMIFDECHNTSK 141 (555)
T ss_dssp GGGCSEEEETTGGGCST
T ss_pred cccCCEEEEECccccCC
Confidence 4 478888877665433
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=27.87 E-value=22 Score=31.20 Aligned_cols=39 Identities=13% Similarity=-0.035 Sum_probs=23.1
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 48 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~ 48 (414)
+++|+|+|||||.+ . +--..+ ..+.. ...++.+.|..+.
T Consensus 90 ~~~DvIlIDEaQFf-k-~~ve~~-~~L~~-~gk~VI~~GL~~D 128 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF-P-DIVEFC-EAMAN-AGKTVIVAALDGT 128 (195)
T ss_dssp HTCSEEEESSGGGC-T-THHHHH-HHHHH-TTCEEEEEEESBC
T ss_pred cCCCEEEEEchhhh-H-HHHHHH-HHHHH-CCCeEEEEecccc
Confidence 46899999999999 3 311112 22322 2346666676544
No 137
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=27.00 E-value=13 Score=38.68 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=12.6
Q ss_pred CcCEEEEecccccCC
Q 015049 7 DYDCAVIDEIQMLGC 21 (414)
Q Consensus 7 ~v~~vVIDE~h~i~d 21 (414)
.-.++||||||.+.|
T Consensus 204 ~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 204 NQIVIILDEAHNLPD 218 (620)
T ss_dssp GGEEEEETTGGGHHH
T ss_pred CCeEEEEECCCchHH
Confidence 456999999999964
No 138
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=25.41 E-value=61 Score=27.90 Aligned_cols=74 Identities=8% Similarity=0.120 Sum_probs=45.5
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC-------CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcC-----ccccc-c
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG-------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-L 155 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~-------~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTd-----al~~G-l 155 (414)
..++|.. |+.-+.++.+.+.+.. ...+..++|+.+.... .+.++. ..+|+|+|. .+..+ +
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLNV---QPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCSS---CCSEEEECHHHHHHHHHTTCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcCC---CCCEEEeCHHHHHHHHHcCCC
Confidence 3455544 9999998888776532 2378888999765432 222222 568999995 23332 3
Q ss_pred cC-CccEEEEccccc
Q 015049 156 NL-NISRIIFSTMKK 169 (414)
Q Consensus 156 nl-~i~~VI~~~~~k 169 (414)
++ .++.||+-....
T Consensus 147 ~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 147 DVHTAHILVVDEADL 161 (219)
T ss_dssp CGGGCCEEEECSHHH
T ss_pred CcCcceEEEEcCchH
Confidence 44 477777755443
No 139
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=25.39 E-value=51 Score=30.79 Aligned_cols=18 Identities=0% Similarity=0.104 Sum_probs=15.0
Q ss_pred CcCCCcCEEEEecccccC
Q 015049 3 DVVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 3 ~~~~~v~~vVIDE~h~i~ 20 (414)
+.....+++||||+|.+.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 455678999999999996
No 140
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.10 E-value=46 Score=31.21 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=14.3
Q ss_pred cCCCcCEEEEecccccC
Q 015049 4 VVSDYDCAVIDEIQMLG 20 (414)
Q Consensus 4 ~~~~v~~vVIDE~h~i~ 20 (414)
......++||||+|.+.
T Consensus 105 ~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLT 121 (334)
T ss_dssp TTSSCEEEEESCGGGBC
T ss_pred ccCCcEEEEECchhhcC
Confidence 34568999999999996
No 141
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=23.97 E-value=4.1e+02 Score=24.95 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred cEEEEec-CCChHHHHHHHHHcCCceEEeeccccCCCcccccccccccccCCCCEEEE---e-cHHHHHHHHHHHHHcCC
Q 015049 39 ELHLCGD-PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT---F-SRHAIYRLKKAIESRGK 113 (414)
Q Consensus 39 ~i~l~g~-~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l~~l~~i~~g~~Iv~---f-sr~~~~~l~~~L~~~~~ 113 (414)
+..++|. .........++..++..+.+....|..+-..... .....++..++|++ . |=.+....++.|.+.|.
T Consensus 164 ~~vVVspd~Ggv~~A~~lA~~L~~~~~~i~K~r~~~~~v~~~--~l~g~v~gk~viIVDDii~TG~Tl~~a~~~L~~~Ga 241 (326)
T 3s5j_B 164 NCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRM--VLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGA 241 (326)
T ss_dssp GCEEEESSGGGHHHHHHHHHHHTCEEEEEEEC-------CCE--EEESCCTTSEEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCchHHHHHHHHHcCCCEEEEEEEecCCCeeeEE--eccccCCCCEEEEEccccCCcHHHHHHHHHHHHcCC
Confidence 4455554 4567778888888887766655555433221111 11223444445543 2 66677788888888875
Q ss_pred C--eEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccc
Q 015049 114 H--LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 155 (414)
Q Consensus 114 ~--~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Gl 155 (414)
. .+++.||=++....+.. ++. .++-+|+||++...-
T Consensus 242 ~~v~~~~tH~v~~~~a~e~l----~~~--~i~~vv~t~tip~~~ 279 (326)
T 3s5j_B 242 TRVYAILTHGIFSGPAISRI----NNA--CFEAVVVTNTIPQED 279 (326)
T ss_dssp SEEEEEEEEECCCTTHHHHH----HHS--CCSEEEEETTSCCHH
T ss_pred CEEEEEEEecccCchHHHHH----hhC--CCCEEEEecCCCChh
Confidence 4 35666888776544443 333 678999999986543
No 142
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=23.92 E-value=2.2e+02 Score=26.63 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=47.2
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCc-----cccc-ccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMG-LNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTda-----l~~G-lnl-~i 159 (414)
.+||.. ||.-+.++.+.+.+.+ ..++..+||+.+...... .+.. ..+|+|+|.- +..+ +++ .+
T Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 103 ISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChHHHHHHHHcCCcChhhC
Confidence 455544 9999999888887532 237888999988765433 3333 4689999973 2222 345 47
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 177 ~~iViDEah 185 (417)
T 2i4i_A 177 KYLVLDEAD 185 (417)
T ss_dssp CEEEESSHH
T ss_pred cEEEEEChh
Confidence 888875544
No 143
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.69 E-value=2.6e+02 Score=26.77 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=42.0
Q ss_pred cccCCCCEEEEe--c-------HHHHHHHHHHHHHcCCCeEEEe--------cCCCCHHHHHHH-HHHhhCCCCcccEEE
Q 015049 85 SNIQTGDCIVTF--S-------RHAIYRLKKAIESRGKHLCSIV--------YGSLPPETRTRQ-ATRFNDASSEFDVLV 146 (414)
Q Consensus 85 ~~i~~g~~Iv~f--s-------r~~~~~l~~~L~~~~~~~v~~i--------hg~L~~e~R~~~-~~~F~~g~~~~~VLV 146 (414)
..+++||.|-++ | ....+...+.|++.|. .+.+- |-+=++++|.+- .+.|.+. .++.++
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~-~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp--~i~aI~ 114 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGF-KLVSGKLTGKTDFYRSGTIKERAQEFNELVYNP--DITCIM 114 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTC-EEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCT--TEEEEE
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCC-EEEECCchhcccCccCCCHHHHHHHHHHHhhCC--CCCEEE
Confidence 356788865544 3 2345566778888876 55332 113356666554 5577877 899999
Q ss_pred EcCccccccc
Q 015049 147 ASDAIGMGLN 156 (414)
Q Consensus 147 aTdal~~Gln 156 (414)
|+-= |.|-+
T Consensus 115 ~~rG-Gyga~ 123 (371)
T 3tla_A 115 STIG-GDNSN 123 (371)
T ss_dssp ESCC-CSCGG
T ss_pred Eccc-cccHH
Confidence 9863 44544
No 144
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.51 E-value=2.1e+02 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=7.0
Q ss_pred cHHHHHHHHHHHHHcC
Q 015049 97 SRHAIYRLKKAIESRG 112 (414)
Q Consensus 97 sr~~~~~l~~~L~~~~ 112 (414)
|.+++.++...-.+.|
T Consensus 62 sqndvnefqneakkeg 77 (112)
T 2lnd_A 62 SQNDVNEFQNEAKKEG 77 (112)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHhcC
Confidence 4444444444444334
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=23.32 E-value=98 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=25.4
Q ss_pred CCcCEEEEecccccCCCCcc----hhHHHHHhCCC-CCcEEEEecCCChHHH
Q 015049 6 SDYDCAVIDEIQMLGCKTRG----FSFTRALLGIC-ANELHLCGDPAAVPLI 52 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG----~~~~~~l~~l~-a~~i~l~g~~~~~~~i 52 (414)
..+|++|+||+=... ..| ..+-..+..-+ ..++.++|-..+..++
T Consensus 119 ~~yDlvILDEi~~al--~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 119 PLLDMVVLDELTYMV--AYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp TTCSEEEEETHHHHH--HTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CCCCEEEEeCCCccc--cCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 579999999994432 111 11333344333 3566777777665433
No 146
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=22.74 E-value=29 Score=28.58 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=11.4
Q ss_pred cCEEEEecccccC
Q 015049 8 YDCAVIDEIQMLG 20 (414)
Q Consensus 8 v~~vVIDE~h~i~ 20 (414)
-.++||||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 4699999999986
No 147
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=22.37 E-value=40 Score=34.88 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCC
Q 015049 6 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 48 (414)
Q Consensus 6 ~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~ 48 (414)
..++++|||||.+...++ .|-.++ ..+..+.++|+..-
T Consensus 338 ~~fd~viIDEAsQ~~e~~---~li~l~--~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 338 MQFRSILIDESTQATEPE---CMVPVV--LGAKQLILVGDHCQ 375 (624)
T ss_dssp CCCSEEEETTGGGSCHHH---HHHHHT--TTBSEEEEEECTTS
T ss_pred CCCCEEEEecccccCcHH---HHHHHH--hcCCeEEEecChhc
Confidence 469999999997665332 233332 23578899998754
No 148
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=22.14 E-value=59 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 015049 350 KVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 385 (414)
Q Consensus 350 ~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~ 385 (414)
-+++.|--||+.-|.-||..++...+|..++..|..
T Consensus 26 gil~cy~r~swq~~ldypgq~rl~rlk~kl~s~ikt 61 (109)
T 3rt3_C 26 GILECYERFSWQRALDYPGQDRLHRLKRKLESRIKT 61 (109)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhccccCCCchhHHHHHHHHHHHhccC
Confidence 578899999999999999999999999888777654
No 149
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=22.13 E-value=3.1e+02 Score=25.58 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=43.3
Q ss_pred cccCCCCEEEEe---c---HHHHHHHHHHHHHcCCCeEEEe---------cCCCCHHHHH-HHHHHhhCCCCcccEEEEc
Q 015049 85 SNIQTGDCIVTF---S---RHAIYRLKKAIESRGKHLCSIV---------YGSLPPETRT-RQATRFNDASSEFDVLVAS 148 (414)
Q Consensus 85 ~~i~~g~~Iv~f---s---r~~~~~l~~~L~~~~~~~v~~i---------hg~L~~e~R~-~~~~~F~~g~~~~~VLVaT 148 (414)
..+++||.|-++ | ....+...+.|++.|. .+.+- .++ ++++|. ...+.|.++ .++.++|+
T Consensus 12 ~~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~-~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp--~i~aI~~~ 87 (311)
T 1zl0_A 12 TWQPIDGRVALIAPASAIATDVLEATLRQLEVHGV-DYHLGRHVEARYRYLAG-TVEQRLEDLHNAFDMP--DITAVWCL 87 (311)
T ss_dssp CCCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTC-CEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHST--TEEEEEES
T ss_pred ccCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEECccccccccccCC-CHHHHHHHHHHHHhCC--CCCEEEEc
Confidence 456778864433 2 4566777788888886 55432 233 566665 445678887 89999998
Q ss_pred Cccccccc
Q 015049 149 DAIGMGLN 156 (414)
Q Consensus 149 dal~~Gln 156 (414)
-= |.|.+
T Consensus 88 rG-Gyga~ 94 (311)
T 1zl0_A 88 RG-GYGCG 94 (311)
T ss_dssp CC-SSCGG
T ss_pred cC-CcCHH
Confidence 76 55544
No 150
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=22.11 E-value=1.2e+02 Score=25.91 Aligned_cols=72 Identities=8% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----c-ccccC-C
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----G-MGLNL-N 158 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~-~Glnl-~ 158 (414)
+.+|+.. ++.-+.++.+.+.+.. ...+..++|+.+...... .+. ..+|+|+|.-. . ..+++ .
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR----DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT----TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3455544 9999998888887642 237888899877654332 222 35799999632 1 12334 3
Q ss_pred ccEEEEcccc
Q 015049 159 ISRIIFSTMK 168 (414)
Q Consensus 159 i~~VI~~~~~ 168 (414)
++.||+-...
T Consensus 156 ~~~iViDEah 165 (224)
T 1qde_A 156 IKMFILDEAD 165 (224)
T ss_dssp CCEEEEETHH
T ss_pred CcEEEEcChh
Confidence 6777765443
No 151
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.80 E-value=2.5e+02 Score=25.20 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=46.4
Q ss_pred CEEEEe-cHHHHHHHHHHHHHcC---CCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcc-----ccc-ccC-Cc
Q 015049 91 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI-----GMG-LNL-NI 159 (414)
Q Consensus 91 ~~Iv~f-sr~~~~~l~~~L~~~~---~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal-----~~G-lnl-~i 159 (414)
.++++. ++.-+.++.+.+.+.+ ...+..+||+.+...... .+.+ .+|+|+|.-. ..+ +++ .+
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVRN----ADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHTT----CSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcCC----CCEEEECHHHHHHHHHcCCcchhhC
Confidence 445544 9999999998888643 237888999998765433 3333 4799999632 222 344 47
Q ss_pred cEEEEcccc
Q 015049 160 SRIIFSTMK 168 (414)
Q Consensus 160 ~~VI~~~~~ 168 (414)
+.||+-...
T Consensus 131 ~~iViDEah 139 (337)
T 2z0m_A 131 EIVIIDEAD 139 (337)
T ss_dssp SEEEEESHH
T ss_pred cEEEEEChH
Confidence 778875544
No 152
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=20.23 E-value=1e+02 Score=34.43 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=47.3
Q ss_pred CCEEEEe-cHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEc-----Cccccccc-C-CccE
Q 015049 90 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-----DAIGMGLN-L-NISR 161 (414)
Q Consensus 90 g~~Iv~f-sr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaT-----dal~~Gln-l-~i~~ 161 (414)
+.++|.. +|.-+.+..+.+.+... .+++++|+.+ .++ +.+|+|+| +.+..|-. + .+..
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltGd~~-----------~~~--~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDIT-----------INP--DAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS-SEEEECSSCB-----------CCC--SCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeCccc-----------cCC--CCCEEEeChHHHHHHHHcCccccccCCE
Confidence 3455544 89999998888887776 7999999987 233 67999999 44555533 4 4888
Q ss_pred EEEccccc
Q 015049 162 IIFSTMKK 169 (414)
Q Consensus 162 VI~~~~~k 169 (414)
||+-....
T Consensus 294 VVIDEaH~ 301 (1108)
T 3l9o_A 294 VIFDEVHY 301 (1108)
T ss_dssp EEEETGGG
T ss_pred EEEhhhhh
Confidence 88766554
Done!