Query 015050
Match_columns 414
No_of_seqs 150 out of 382
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.2E-25 4E-30 189.9 6.4 95 279-383 8-102 (105)
2 2roh_A RTBP1, telomere binding 99.9 1.4E-23 4.9E-28 181.4 8.4 95 278-382 25-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 1.2E-23 4E-28 170.7 6.1 81 285-375 1-81 (83)
4 2juh_A Telomere binding protei 99.9 1.1E-22 3.6E-27 175.7 8.2 95 278-382 11-105 (121)
5 1x58_A Hypothetical protein 49 99.7 4.2E-18 1.5E-22 132.8 6.7 54 282-337 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 4.1E-16 1.4E-20 120.3 6.9 55 282-338 9-63 (64)
7 1w0t_A Telomeric repeat bindin 99.5 2.6E-14 8.9E-19 105.1 6.6 51 284-336 2-52 (53)
8 1ity_A TRF1; helix-turn-helix, 99.5 4.3E-14 1.5E-18 108.9 7.7 59 279-339 5-63 (69)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 3.7E-11 1.3E-15 87.5 6.0 48 284-335 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 99.1 1.1E-10 3.8E-15 87.4 6.5 52 282-337 6-57 (60)
11 1gvd_A MYB proto-oncogene prot 99.1 1.3E-10 4.3E-15 84.8 5.5 48 284-335 3-50 (52)
12 1x41_A Transcriptional adaptor 99.0 2.6E-10 9E-15 85.9 6.3 50 283-336 7-56 (60)
13 2dim_A Cell division cycle 5-l 99.0 4.2E-10 1.4E-14 86.7 5.9 51 283-337 8-58 (70)
14 2elk_A SPCC24B10.08C protein; 99.0 7.3E-10 2.5E-14 83.3 6.4 48 284-334 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.9 2.1E-09 7E-14 86.1 6.1 52 277-333 11-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.8 4.5E-09 1.5E-13 81.6 6.5 50 283-337 8-57 (72)
17 2din_A Cell division cycle 5-l 98.8 5E-09 1.7E-13 79.8 6.0 50 283-338 8-57 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.8 8.5E-09 2.9E-13 80.1 5.6 50 283-336 7-61 (75)
19 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.4E-08 4.7E-13 82.7 5.6 48 284-335 4-51 (105)
20 2llk_A Cyclin-D-binding MYB-li 98.7 2E-08 7E-13 79.8 5.2 48 283-336 22-69 (73)
21 2k9n_A MYB24; R2R3 domain, DNA 98.7 2.8E-08 9.5E-13 81.8 6.0 48 285-336 2-49 (107)
22 3osg_A MYB21; transcription-DN 98.7 2.9E-08 9.9E-13 84.0 6.2 50 281-335 8-57 (126)
23 1h8a_C AMV V-MYB, MYB transfor 98.6 3.9E-08 1.3E-12 82.9 6.1 49 283-335 26-74 (128)
24 3osg_A MYB21; transcription-DN 98.6 4.5E-08 1.5E-12 82.8 6.0 57 283-344 61-117 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.6 4.6E-08 1.6E-12 79.6 5.5 49 283-336 55-103 (105)
26 3zqc_A MYB3; transcription-DNA 98.6 6.8E-08 2.3E-12 82.0 6.5 51 284-339 54-104 (131)
27 2k9n_A MYB24; R2R3 domain, DNA 98.6 8.2E-08 2.8E-12 79.0 6.5 49 283-336 52-100 (107)
28 3zqc_A MYB3; transcription-DNA 98.5 5.6E-08 1.9E-12 82.5 4.5 49 284-336 2-50 (131)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.5 8.3E-08 2.8E-12 76.2 4.9 52 281-336 15-69 (73)
30 1h8a_C AMV V-MYB, MYB transfor 98.5 1.3E-07 4.4E-12 79.7 4.8 49 283-336 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.4 3.4E-07 1.2E-11 79.6 5.6 49 283-335 57-105 (159)
32 2ltp_A Nuclear receptor corepr 97.7 5.3E-08 1.8E-12 79.0 0.0 50 283-337 15-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.2 8E-07 2.7E-11 77.2 4.8 49 283-336 109-157 (159)
34 2cjj_A Radialis; plant develop 98.2 1.8E-06 6.2E-11 71.4 6.0 49 284-336 8-59 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.0 1.4E-05 4.8E-10 60.5 6.9 52 279-335 7-58 (61)
36 1ign_A Protein (RAP1); RAP1,ye 97.8 1.2E-05 4.1E-10 76.9 4.6 52 283-338 7-63 (246)
37 3hm5_A DNA methyltransferase 1 97.8 3.4E-05 1.1E-09 64.3 6.3 51 285-336 31-82 (93)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.7 5.3E-05 1.8E-09 59.9 6.4 49 283-336 7-58 (72)
39 2ebi_A DNA binding protein GT- 97.3 8.4E-05 2.9E-09 58.9 2.6 55 283-337 3-66 (86)
40 1wgx_A KIAA1903 protein; MYB D 97.2 0.00048 1.6E-08 55.1 5.9 50 284-337 8-60 (73)
41 2iw5_B Protein corest, REST co 97.2 0.00039 1.3E-08 66.1 6.1 50 281-335 130-179 (235)
42 4b4c_A Chromodomain-helicase-D 97.1 0.00055 1.9E-08 61.3 6.0 53 284-336 134-196 (211)
43 4iej_A DNA methyltransferase 1 97.0 0.0012 4E-08 55.2 6.3 50 285-335 31-81 (93)
44 2crg_A Metastasis associated p 96.8 0.0036 1.2E-07 48.8 7.4 58 281-342 5-62 (70)
45 2yqk_A Arginine-glutamic acid 96.8 0.0037 1.3E-07 47.7 6.9 51 282-336 7-57 (63)
46 4b4c_A Chromodomain-helicase-D 96.4 0.0052 1.8E-07 54.9 6.8 55 281-337 4-60 (211)
47 1fex_A TRF2-interacting telome 96.4 0.0038 1.3E-07 47.5 4.6 49 284-335 2-58 (59)
48 1ofc_X ISWI protein; nuclear p 96.3 0.0025 8.5E-08 62.4 4.4 54 284-337 212-276 (304)
49 2xb0_X Chromo domain-containin 96.0 0.0035 1.2E-07 60.3 3.5 30 285-314 169-198 (270)
50 1irz_A ARR10-B; helix-turn-hel 95.5 0.039 1.3E-06 43.2 7.1 54 280-335 3-61 (64)
51 2y9y_A Imitation switch protei 95.5 0.012 4E-07 59.3 4.9 55 284-338 228-293 (374)
52 2xag_B REST corepressor 1; ami 95.3 0.02 7E-07 59.2 6.1 49 282-335 378-426 (482)
53 4eef_G F-HB80.4, designed hema 93.5 0.019 6.6E-07 46.3 0.9 43 284-330 20-65 (74)
54 4a69_C Nuclear receptor corepr 92.7 0.1 3.5E-06 42.7 4.2 50 281-335 40-89 (94)
55 2xb0_X Chromo domain-containin 91.0 0.37 1.3E-05 46.4 6.5 53 283-337 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 85.5 2.5 8.6E-05 35.5 7.2 53 281-337 30-84 (95)
57 1ign_A Protein (RAP1); RAP1,ye 79.7 2.4 8.1E-05 40.8 5.6 29 305-337 172-200 (246)
58 2lr8_A CAsp8-associated protei 78.6 0.5 1.7E-05 37.9 0.0 49 283-336 13-63 (70)
59 3ukx_C Bimax2 peptide; arm rep 59.6 4.8 0.00016 26.8 1.9 11 252-262 10-20 (28)
60 3ukw_C Bimax1 peptide; arm rep 52.5 7.7 0.00027 25.8 2.0 16 240-259 2-17 (28)
61 1ofc_X ISWI protein; nuclear p 49.3 17 0.00059 35.6 4.8 48 284-335 110-157 (304)
62 2xag_B REST corepressor 1; ami 48.5 3.7 0.00013 42.6 0.0 48 284-336 189-236 (482)
63 2q2k_A Hypothetical protein; p 34.1 8.8 0.0003 30.0 0.1 22 178-199 48-69 (70)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.92 E-value=1.2e-25 Score=189.87 Aligned_cols=95 Identities=26% Similarity=0.581 Sum_probs=81.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccCCCCCcccccCCCCH
Q 015050 279 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 358 (414)
Q Consensus 279 ~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~ 358 (414)
..|+++++||+||+++|++||++||.|+|+.|+..+|..|.+||.||||||||||+|.+.++.+.+++ .|+|+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 35778999999999999999999999999999999988899999999999999999987765443333 35999
Q ss_pred HHHHHHHHhHhhCCCCCCcCCCccC
Q 015050 359 PVLCRIRELATIHPYPRVPYSKKCN 383 (414)
Q Consensus 359 ~lL~RVreLa~~hpyp~~~~~~~~~ 383 (414)
++|+||++ +|+||.+.+.+.-.
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~ 102 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQ 102 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHh
Confidence 99999999 77888887776544
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.89 E-value=1.4e-23 Score=181.36 Aligned_cols=95 Identities=28% Similarity=0.555 Sum_probs=81.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccCCCCCcccccCCCC
Q 015050 278 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 357 (414)
Q Consensus 278 ~~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP 357 (414)
...||++++||.||+++|++||++||.|+|+.|++.+|..|.+||.+|||||||||+|.+.+..+.++. .++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p 97 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVP 97 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCC
Confidence 346788999999999999999999999999999999888899999999999999999977765443332 3589
Q ss_pred HHHHHHHHHhHhhCCCCCCcCCCcc
Q 015050 358 KPVLCRIRELATIHPYPRVPYSKKC 382 (414)
Q Consensus 358 ~~lL~RVreLa~~hpyp~~~~~~~~ 382 (414)
++++++|++ +|.||.+++++..
T Consensus 98 ~e~~~~v~~---~h~~~g~~~~~~~ 119 (122)
T 2roh_A 98 QELLDRVLA---AQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHHH---HHHHHHSSCSCCC
T ss_pred HHHHHHHHH---HHHHHhhHHhhhh
Confidence 999999998 7777777777654
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.88 E-value=1.2e-23 Score=170.72 Aligned_cols=81 Identities=30% Similarity=0.668 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccCCCCCcccccCCCCHHHHHHH
Q 015050 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLCRI 364 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~~lL~RV 364 (414)
++||+||+++|++||++||.|+|++|++.+|..|.+||.+|||||||||+|.+.++.+.+++ .|+|+++++||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-------~~~p~~~~~rv 73 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVPQDLLDRV 73 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-------SCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999888889999999999999999988765443332 46999999999
Q ss_pred HHhHhhCCCCC
Q 015050 365 RELATIHPYPR 375 (414)
Q Consensus 365 reLa~~hpyp~ 375 (414)
++ +|+||.
T Consensus 74 ~~---~~a~~~ 81 (83)
T 2ckx_A 74 LA---AHAYWS 81 (83)
T ss_dssp HH---HHHHHH
T ss_pred HH---HHHHHh
Confidence 99 555554
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.87 E-value=1.1e-22 Score=175.74 Aligned_cols=95 Identities=27% Similarity=0.585 Sum_probs=82.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccCCCCCcccccCCCC
Q 015050 278 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 357 (414)
Q Consensus 278 ~~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP 357 (414)
...|+++++||.||+++|++||++||.|+|+.|+..++.+|.+||.+|||||||||++.+.++.+.++. .++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~p 83 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVP 83 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCCC
Confidence 456888999999999999999999999999999999988899999999999999999977764443332 3599
Q ss_pred HHHHHHHHHhHhhCCCCCCcCCCcc
Q 015050 358 KPVLCRIRELATIHPYPRVPYSKKC 382 (414)
Q Consensus 358 ~~lL~RVreLa~~hpyp~~~~~~~~ 382 (414)
++++++|++ +|.||.|+.++..
T Consensus 84 ~e~~~rv~~---~h~~~gn~~~~~~ 105 (121)
T 2juh_A 84 QDLLDRVLA---AHAYWSQQQGKQH 105 (121)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSC
T ss_pred HHHHHHHHH---HHHHHccchhccC
Confidence 999999998 7778888888843
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4.2e-18 Score=132.80 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
+.+++||+||+++|++||++||. +|++|+..|.. |.+||.||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 46889999999999999999999 99999999853 78999999999999999854
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=4.1e-16 Score=120.34 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc
Q 015050 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~ 338 (414)
+++++||+||+++|+++|++||.++|+.|.+.++ |.+||.+||+|||+||+|.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 3467899999999999999999999999998875 579999999999999999764
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=2.6e-14 Score=105.14 Aligned_cols=51 Identities=27% Similarity=0.644 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
+.+||+||++.|+++|++||.++|+.|...+. |.+||++||+++|+|++|+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 57899999999999999999999999998864 4589999999999999985
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.50 E-value=4.3e-14 Score=108.91 Aligned_cols=59 Identities=25% Similarity=0.598 Sum_probs=52.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhccc
Q 015050 279 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 339 (414)
Q Consensus 279 ~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~ 339 (414)
..++++.+||+||+++|+++|++||.++|+.|...+. |.+||.+||+++|+|+++....
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCC
Confidence 3566788999999999999999999999999998764 4599999999999999987654
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.16 E-value=3.7e-11 Score=87.46 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999999999764 58999999999999985
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=1.1e-10 Score=87.37 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
.++.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.++++..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCCc
Confidence 356789999999999999999998999999874 5899999999999998643
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.08 E-value=1.3e-10 Score=84.82 Aligned_cols=48 Identities=29% Similarity=0.601 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+.+||+||++.|+++|++||.++|..|...+ .+||..+|+++|.|.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 5689999999999999999998999999764 59999999999999875
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=2.6e-10 Score=85.93 Aligned_cols=50 Identities=20% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
.+.+||+||++.|+++|++||.++|..|.+... +||..+|+++|.+++..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccC
Confidence 456899999999999999999999999998774 89999999999998864
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.2e-10 Score=86.70 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
++.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.|.++..
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCc
Confidence 46689999999999999999999999999875 4899999999999998754
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.98 E-value=7.3e-10 Score=83.26 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
+.+||++|++.|+++|++||.++|+.|.+... .+||..+|+++|.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998763 2899999999999874
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.88 E-value=2.1e-09 Score=86.13 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=46.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHH
Q 015050 277 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 333 (414)
Q Consensus 277 ~~~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNL 333 (414)
.+..+..+.+||.||++.|+++|++|| ++|..|.+... +||..+|+.+|.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 344556678999999999999999999 89999998764 89999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=4.5e-09 Score=81.60 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
++.+||.||++.|+++|++||. +|+.|...+ .+||..+||.+|.++++..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHH
Confidence 4668999999999999999999 999999854 5999999999999999754
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=5e-09 Score=79.84 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~ 338 (414)
++.+||.||++.|++.|++||. +|..|.. +. +||..+|+++|.++++...
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHh
Confidence 3568999999999999999998 9999998 53 7999999999999997553
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=8.5e-09 Score=80.15 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~-----G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
.+.+||.||++.|+++|++||. ++|..|.... .+||..||+++|.++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~----~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL----GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH----SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh----CCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999996 7999999876 489999999999888864
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.71 E-value=1.4e-08 Score=82.72 Aligned_cols=48 Identities=27% Similarity=0.586 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+.+||+||++.|+++|++||.++|..|.... .+||..+|+++|+|.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccC
Confidence 5689999999999999999999999998653 59999999999999875
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.66 E-value=2e-08 Score=79.77 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
++.+||+||++.|++.|++||. +|+.|.+. | +||..++|++|+.|.+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 4668999999999999999998 69999976 4 89999999999988764
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.65 E-value=2.8e-08 Score=81.80 Aligned_cols=48 Identities=27% Similarity=0.591 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
.+||+||++.|+++|++||.++|..|.... .+||+.+|+++|.|.+..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYINP 49 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999999999765 489999999999998863
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.65 E-value=2.9e-08 Score=83.97 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
..++.+||+||++.|+++|++||. +|..|.... .+||..+|+++|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcc
Confidence 345678999999999999999998 999998654 59999999999999885
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.62 E-value=3.9e-08 Score=82.88 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
++.+||+||++.|+++|++||.++|..|.... .+||..+|+++|.|++.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcc
Confidence 35689999999999999999999999999764 59999999999999875
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.61 E-value=4.5e-08 Score=82.79 Aligned_cols=57 Identities=23% Similarity=0.493 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccC
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNK 344 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r 344 (414)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||++|++|++.-.+|....
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~~~ 117 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQTQQ 117 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC-----
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 3568999999999999999995 99999964 369999999999999998765654433
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.59 E-value=4.6e-08 Score=79.58 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
++.+||+||++.|+++|++||. +|+.|... |.+||..+||++|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999996 99999864 4699999999999999864
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.58 E-value=6.8e-08 Score=82.04 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhccc
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 339 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~ 339 (414)
+.+||.||++.|+++|.+||. +|+.|... |.+||..+||++|+++++....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhh
Confidence 458999999999999999995 99999864 3699999999999999986544
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.57 E-value=8.2e-08 Score=78.99 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
.+.+||+||++.|+++|.+||. +|+.|...+ .+||..+||++|++|++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhh
Confidence 3579999999999999999997 999999754 599999999999999975
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.52 E-value=5.6e-08 Score=82.52 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
+.+||+||++.|+.+|++||.++|..|.... .+||..+|+++|+|.+..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTST
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCc
Confidence 3579999999999999999999999998643 599999999999998853
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.52 E-value=8.3e-08 Score=76.17 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
+-...+||.+|+..|+.+|++||. .+|..|.... .+||..+|+.+|.+|++-
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHc
Confidence 345678999999999999999994 5899999765 499999999999999863
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.45 E-value=1.3e-07 Score=79.73 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
++.+||+||++.|+++|++||. +|+.|... |.+||..+||++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999997 99999964 3699999999999999874
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.37 E-value=3.4e-07 Score=79.57 Aligned_cols=49 Identities=27% Similarity=0.555 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
.+.+||+||++.|+++|++||.++|+.|.... .+||..+|+++|.|++.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998999998653 59999999999999875
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.70 E-value=5.3e-08 Score=78.97 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
.+.+||.||++.|+++|++||. +|..|.... .+||..+||.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3568999999999999999998 899998654 5999999999999999754
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.23 E-value=8e-07 Score=77.25 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
++.+||+||++.|+++|++||. +|+.|.+. |.+||..+||.+|..|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999997 99999964 4699999999999999864
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.20 E-value=1.8e-06 Score=71.36 Aligned_cols=49 Identities=18% Similarity=0.514 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 284 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG---~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
..+||.||+..|++++.+|| ..+|..|.... .+||..+++.+|.+|++.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v----pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV----EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS----TTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 45899999999999999998 45799999876 489999999999999753
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.4e-05 Score=60.53 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=45.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 279 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 279 ~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+.|+...+||++|.+.+++|+.+||. +|..|.... .+||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcC
Confidence 35677889999999999999999996 999998543 59999999999987665
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.82 E-value=1.2e-05 Score=76.88 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc
Q 015050 283 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~-----Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~ 338 (414)
.+.+||+||++.|++.|++||..+ |+.|.+. +.+||.-+||++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 356899999999999999998853 9999964 469999999999999998654
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.79 E-value=3.4e-05 Score=64.27 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHHhhh
Q 015050 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~if~~RT~VDLKDKWRNLlKa 336 (414)
.+||.||++.|.+-+++||. +|..|.+.|. ..+..||-.|||++|..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999998 9999999883 234689999999999988864
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.74 E-value=5.3e-05 Score=59.88 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
....||.||...|.++|.+|+. .+|..|.... +||..|++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 5799999873 69999999999999876
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.34 E-value=8.4e-05 Score=58.95 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----CC-----ChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 283 NQRMWTLSEVMKLIDGISQFG----VG-----KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG----~G-----~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
....||.+|+.+|+......- .+ .|..|.......=-.||+.+|++||.||.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356799999999999987532 11 69999887421101799999999999999853
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.24 E-value=0.00048 Score=55.05 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 284 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
...||.+|..+|..++..|+. ++|..|..... +||..+++.+|.-|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhcc
Confidence 347999999999999999986 68999998764 799999999999997643
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.21 E-value=0.00039 Score=66.14 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
.+...+||.+|.+.+++|+.+||. +|..|.+.. ..||..++|.-|.+..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 356779999999999999999997 899999875 48999999999988775
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.14 E-value=0.00055 Score=61.26 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhc---------CC-CCCCChhhHHHHHHHHhhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---------SS-SSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f---------~i-f~~RT~VDLKDKWRNLlKa 336 (414)
...||.+|+..|+.||.+||.|+|..|+.+-. +. ...++++.|+.+--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999741 11 2456778888887777664
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.01 E-value=0.0012 Score=55.20 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHHhh
Q 015050 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~if~~RT~VDLKDKWRNLlK 335 (414)
..||.||+..|.+-+++|+. +|--|.+.|. ..+..||--|||++|-.+.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999997 9999999883 33568999999999977765
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.83 E-value=0.0036 Score=48.80 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccc
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 342 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~ 342 (414)
|+....||++|.....+|+.+||. +|..|...+ +..||..||..-|-...|...+.++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchHHHH
Confidence 567789999999999999999999 899999743 3689999999999876665554333
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.0037 Score=47.72 Aligned_cols=51 Identities=20% Similarity=0.409 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
-....||++|.+...+|+.+||. +|..|.+.+ +..||..||..-|-...|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHCS
T ss_pred cCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccCC
Confidence 34578999999999999999999 899998754 3589999999887765553
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.45 E-value=0.0052 Score=54.91 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG--~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
|...+.||..|...|+.++.+|| .++|..|..+.. |..+|..++++=.+.++..+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHH
Confidence 45677899999999999999999 689999999864 67999999998777766543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.36 E-value=0.0038 Score=47.45 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 284 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKy--------G~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
|.+||+||+.+|++-|.+| |.--|+.|.... +..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544699987721 369999999999998664
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.35 E-value=0.0025 Score=62.41 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhc
Q 015050 284 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlKas 337 (414)
.+.||.+|+..|+-++.+||. |+|..|+... |+. |..||+++|..+-.+|+++-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999 9999998552 333 38999999999999999864
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.00 E-value=0.0035 Score=60.32 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 015050 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 314 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~ 314 (414)
-.|+.+|+..|+.||.+||.|+|..|+.+-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 359999999999999999999999999985
No 50
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.54 E-value=0.039 Score=43.18 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=44.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCC--hHHHHHHhcCCCCCCChhhHH---HHHHHHhh
Q 015050 280 RRKNQRMWTLSEVMKLIDGISQFGVGK--WTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 335 (414)
Q Consensus 280 rRK~rr~WT~EEveaLv~GVeKyG~G~--Wk~Il~~~f~if~~RT~VDLK---DKWRNLlK 335 (414)
.+|++..||+|.-+.++++|+++|..+ |+.|++... ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999533 899998875 3688988888 66776654
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.48 E-value=0.012 Score=59.28 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhcc
Q 015050 284 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlKas~ 338 (414)
.+.||.+|+..|+-+|.+||. |+|..|+... |+- |..||+..|..+-..|+++-.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 457999999999999999999 9999998872 333 489999999999999998643
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.29 E-value=0.02 Score=59.17 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+..-+||.+|.+.+++||.+||. +|..|..... .||..++|.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg----TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 45678999999999999999998 9999998764 8999999998876554
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.47 E-value=0.019 Score=46.29 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhcCCCCCCChhhHHHHH
Q 015050 284 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 330 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G---~Wk~Il~~~f~if~~RT~VDLKDKW 330 (414)
-..||.+|..+|..++.+|..+ +|.+|.... .+||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V----pGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV----KGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS----CSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc----CCCCHHHHHHHH
Confidence 4579999999999999999976 899998765 489999998655
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.75 E-value=0.1 Score=42.73 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
|+....||++|.+.+.+++..||. +|..|... +..||..||-.=+-...|
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhcccc
Confidence 456788999999999999999998 89999543 469999999866654443
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.03 E-value=0.37 Score=46.43 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 283 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG--~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
+++.||..|+..|+.++.+|| .++|..|..+.. |..+...+|+.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~--L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT--LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS--SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999 589999998853 78999999998888777544
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.53 E-value=2.5 Score=35.54 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 281 RKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~--G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
-.+-..||.||+..++...++-|. -.|+.|.... .+|+.-++++|++.|++.-
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHH
Confidence 346778999999999999999985 4799988776 4899999999999999853
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=79.74 E-value=2.4 Score=40.77 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.4
Q ss_pred CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015050 305 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 305 G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
+.|+.|.+.+ .+||.+..||+||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3799998775 4999999999999998644
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=78.59 E-value=0.5 Score=37.86 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 283 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~--G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
.-..||.||+..++...++-|. -.|+.|... + +|++-+++++++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999986 357766643 4 89999999999999874
No 59
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=59.59 E-value=4.8 Score=26.83 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=8.5
Q ss_pred cccCCCCCCCC
Q 015050 252 LGFESDDDIFS 262 (414)
Q Consensus 252 ~~~Ewdde~d~ 262 (414)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 67899997664
No 60
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=52.48 E-value=7.7 Score=25.83 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.7
Q ss_pred cccCCCCCCCCccccCCCCC
Q 015050 240 LRGGRLKKRSPILGFESDDD 259 (414)
Q Consensus 240 ~R~~rm~kN~s~~~~Ewdde 259 (414)
.|+.||++ +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35667777 78999874
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=49.30 E-value=17 Score=35.56 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
-..||..+-.+++.|+.+||...|..|.... .+.|..+++.=...+.+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev----~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDV----EGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS----TTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Confidence 4469999999999999999999999998765 37999999877666664
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=48.49 E-value=3.7 Score=42.61 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015050 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
...||.+|...+.+|+.+||. +|..|.+. +.+||.-+|-.-|....|.
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp -----------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHhcccccc
Confidence 347999999999999999998 89999853 3588888887665544443
No 63
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=34.12 E-value=8.8 Score=30.02 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=17.0
Q ss_pred ccchhhhcccchhhhhhcccCC
Q 015050 178 LGTKVKRLRKPTKRYIEESSDL 199 (414)
Q Consensus 178 ~~~~~kR~rKptkryieE~S~~ 199 (414)
.+....-+|.+.+|||||+-+.
T Consensus 48 rgtktahirealrryieeigen 69 (70)
T 2q2k_A 48 RGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTCHHHHHHHHHHHHHHHCC--
T ss_pred CccchHHHHHHHHHHHHHhccC
Confidence 3467788999999999998764
Done!