BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015052
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/402 (65%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-S 58
MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG TDPE +
Sbjct: 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66
Query: 59 FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
FKS VPLVT +L+PYI+R++DGD SPILTG P+ IS SSGT+QG+PKF+PF DELME
Sbjct: 67 FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126
Query: 119 TLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186
Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246
Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
+ DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306
Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
+ GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366
Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
FEF+P S+ E KPVGLT+VK+GEEYE+++TN A
Sbjct: 367 FEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYA 402
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 284 bits (726), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 149/384 (38%), Positives = 224/384 (58%), Gaps = 3/384 (0%)
Query: 17 FETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQ 76
E +T++A+ +Q L +IL N EYL+ L G T E+FKS +P++ +EDLQP IQ
Sbjct: 26 IEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQ 85
Query: 77 RIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP- 135
RI +GD S IL+ PI+ SSGT+ G+ K +P E ++ ++ N P
Sbjct: 86 RIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPG 145
Query: 136 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF 195
+ KGK L F++ +++T GGL A T+ Y+S FK + SP+E I D
Sbjct: 146 LDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADS 205
Query: 196 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 255
QS+Y +LCG+ R+++ + + FA L+ A R +L W +L DIR G LS +IT PS
Sbjct: 206 FQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPS 265
Query: 256 IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRH 315
+R ++ +LKP+PELADL+ +CS NW G+I ++PN KYL I+TG+M Y+ L +
Sbjct: 266 VRNCVAGVLKPDPELADLVAGECSK-DNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDY 324
Query: 316 YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCI 375
Y+G LPL Y SSE + G N+NP P ++ ++PN+ YFEF+P ++
Sbjct: 325 YSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS- 383
Query: 376 EPKPVGLTEVKVGEEYEIIVTNVA 399
P+ V L V+VG+EYE+++T A
Sbjct: 384 PPRLVDLAHVEVGKEYELVITTYA 407
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 228/394 (57%), Gaps = 13/394 (3%)
Query: 9 DVDELIE-EFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVT 67
D++E E + + +T + + IQ L +I+ N EYLQ L R D E FK VP+V+
Sbjct: 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVS 70
Query: 68 HEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSY 127
+ED++PY+ R+++G+ S +++ + IT SSGT+ G K +P+N++ ++ I+
Sbjct: 71 YEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRM 130
Query: 128 AFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSP 186
+ + +GK + F++ ++S T GL A AT++ ++S FK SP
Sbjct: 131 QVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSP 190
Query: 187 DEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGV 246
DEVI P+ +SLYCHLLCGL+ R+E+ S FA +V A + WEELC +IR G
Sbjct: 191 DEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGH 250
Query: 247 LSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
LS+ +T + ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGS
Sbjct: 251 LSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGS 309
Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
M Y+ L +Y DLPL+S YGSSE G N++P PE ++ +PN+ YFEFIP
Sbjct: 310 MGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDG 369
Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
G+ + V L +VK+G YE +VTN A
Sbjct: 370 GD--------KNDVVDLEDVKLGCTYEPVVTNFA 395
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 222/394 (56%), Gaps = 13/394 (3%)
Query: 9 DVDELIE-EFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVT 67
D++E E + + +T + + IQ L +I+ N EYLQ L R D E FK VP+V+
Sbjct: 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVS 70
Query: 68 HEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSY 127
+ED++PY+ R+++G+ S +++ + IT SSGT+ G K P+N++ ++ I+
Sbjct: 71 YEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRX 130
Query: 128 AFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSP 186
+ + +GK F++ ++S T GL A AT++ ++S FK SP
Sbjct: 131 QVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSP 190
Query: 187 DEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGV 246
DEVI P+ +SLYCHLLCGL+ R+E+ S FA V A + WEELC +IR G
Sbjct: 191 DEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGH 250
Query: 247 LSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
LS+ +T + ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGS
Sbjct: 251 LSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGS 309
Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
Y+ L +Y DLPL+S YGSSE G N++P PE ++ PN YFEFIP
Sbjct: 310 XGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDG 369
Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
G+ + V L +VK+G YE +VTN A
Sbjct: 370 GD--------KNDVVDLEDVKLGCTYEPVVTNFA 395
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 193 PDFHQSLYCHLLCGL---IFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSS 249
P + + H CG+ I RE + +T L + + + W E D + + +
Sbjct: 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPN 68
Query: 250 RITVPS-IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA--KYLSGIMTGSM 306
R T PS I+A LAD +H K GL ++ +A + S M GS+
Sbjct: 69 RQTFPSGIKA-----------LADYVHAK--------GLKLGIYSDAGSQTCSNKMPGSL 109
Query: 307 EHYLKKLRHYA 317
+H + ++ +A
Sbjct: 110 DHEEQDVKTFA 120
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 3 EKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSC 62
+K+E D+ + I E IT ++ + + E + YL++ G + T + K+C
Sbjct: 2052 KKLEWADIRKKIMEPNFITSIINYDTKKMMTPKIREAITKGYLEDPGFDYETVNRASKAC 2111
Query: 63 VPLVTHEDLQPYIQRIID 80
PLV Q Y I+D
Sbjct: 2112 GPLVKWATAQTYYSEILD 2129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,545,151
Number of Sequences: 62578
Number of extensions: 546066
Number of successful extensions: 1189
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 11
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)