Query 015052
Match_columns 414
No_of_seqs 122 out of 547
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 2E-101 4E-106 810.6 34.3 396 9-407 20-426 (612)
2 PLN02247 indole-3-acetic acid- 100.0 6E-99 1E-103 792.7 35.7 403 1-407 1-420 (606)
3 PLN02249 indole-3-acetic acid- 100.0 1E-93 2.2E-98 758.3 34.9 391 9-407 19-413 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 5.1E-92 1.1E-96 742.1 25.4 364 13-406 2-373 (528)
5 COG1541 PaaK Coenzyme F390 syn 98.7 5.8E-07 1.3E-11 92.6 16.1 87 22-117 21-116 (438)
6 TIGR03335 F390_ftsA coenzyme F 98.7 4.7E-07 1E-11 94.4 15.2 93 22-118 12-113 (445)
7 TIGR02155 PA_CoA_ligase phenyl 98.6 4.1E-06 8.8E-11 86.3 18.8 87 22-117 6-101 (422)
8 TIGR02304 aden_form_hyp probab 98.1 0.00014 3E-09 75.8 16.5 86 22-116 22-124 (430)
9 PRK04813 D-alanine--poly(phosp 95.1 0.12 2.6E-06 53.5 10.0 27 90-117 143-169 (503)
10 PRK07529 AMP-binding domain pr 94.7 0.32 7E-06 52.9 12.3 28 88-116 211-238 (632)
11 PRK06187 long-chain-fatty-acid 94.7 0.94 2E-05 47.0 15.2 31 87-118 164-194 (521)
12 PRK06334 long chain fatty acid 93.9 1.7 3.7E-05 46.2 15.5 28 89-117 182-209 (539)
13 COG1022 FAA1 Long-chain acyl-C 92.5 1.5 3.2E-05 48.0 12.2 87 267-397 340-427 (613)
14 TIGR01734 D-ala-DACP-lig D-ala 91.9 1 2.3E-05 46.7 10.1 28 89-117 140-167 (502)
15 COG1021 EntE Peptide arylation 88.0 0.29 6.3E-06 50.3 2.0 25 90-115 189-213 (542)
16 PRK12467 peptide synthase; Pro 86.4 2.8 6.1E-05 55.3 10.0 30 88-118 654-683 (3956)
17 PRK12467 peptide synthase; Pro 84.5 2.1 4.5E-05 56.5 7.5 29 89-118 3236-3264(3956)
18 TIGR02372 4_coum_CoA_lig 4-cou 81.6 2.4 5.2E-05 43.6 5.3 53 54-118 70-122 (386)
19 PRK12316 peptide synthase; Pro 80.2 4 8.6E-05 55.2 7.8 30 88-118 4692-4721(5163)
20 PRK07824 O-succinylbenzoic aci 77.0 2 4.4E-05 42.7 3.0 28 90-118 35-62 (358)
21 PRK10946 entE enterobactin syn 76.4 2.6 5.7E-05 44.5 3.9 29 89-118 181-209 (536)
22 PRK07445 O-succinylbenzoic aci 75.9 2.4 5.2E-05 44.1 3.3 28 89-117 119-146 (452)
23 TIGR01923 menE O-succinylbenzo 75.0 2.6 5.5E-05 42.8 3.2 30 87-117 108-137 (436)
24 PF00501 AMP-binding: AMP-bind 74.7 2.1 4.5E-05 43.2 2.4 94 291-403 275-375 (417)
25 PRK09274 peptide synthase; Pro 73.8 3.4 7.3E-05 43.7 3.8 29 88-117 172-200 (552)
26 PLN02860 o-succinylbenzoate-Co 72.8 2.1 4.5E-05 45.6 2.0 28 88-116 170-197 (563)
27 PRK08316 acyl-CoA synthetase; 72.4 4.3 9.4E-05 42.2 4.2 29 87-116 168-196 (523)
28 PRK07470 acyl-CoA synthetase; 71.5 2.2 4.8E-05 44.8 1.7 28 88-116 161-188 (528)
29 PRK09029 O-succinylbenzoic aci 71.0 3.5 7.7E-05 42.4 3.1 29 88-117 133-161 (458)
30 COG0318 CaiC Acyl-CoA syntheta 70.5 4.1 8.9E-05 43.4 3.6 31 87-118 168-198 (534)
31 PRK07656 long-chain-fatty-acid 70.4 4 8.6E-05 42.3 3.4 30 87-117 163-192 (513)
32 PRK05677 long-chain-fatty-acid 70.2 4.4 9.4E-05 43.1 3.7 28 89-117 206-233 (562)
33 PRK05851 long-chain-fatty-acid 69.5 4.6 9.9E-05 42.6 3.6 28 89-117 151-178 (525)
34 TIGR01733 AA-adenyl-dom amino 69.5 4.3 9.3E-05 40.6 3.3 29 89-118 119-147 (408)
35 PRK07638 acyl-CoA synthetase; 69.2 4.4 9.6E-05 42.0 3.4 24 93-117 146-169 (487)
36 PRK08279 long-chain-acyl-CoA s 69.1 3.7 8E-05 44.1 2.9 29 89-118 198-226 (600)
37 PRK08180 feruloyl-CoA synthase 69.0 4.1 8.9E-05 44.0 3.2 28 89-117 208-235 (614)
38 PRK05857 acyl-CoA synthetase; 68.2 2.8 6.1E-05 44.4 1.7 28 88-116 167-194 (540)
39 PLN02736 long-chain acyl-CoA s 68.0 4 8.6E-05 44.5 2.9 28 89-117 220-247 (651)
40 PRK07788 acyl-CoA synthetase; 67.7 4.2 9.2E-05 43.0 3.0 26 90-116 207-232 (549)
41 PRK09088 acyl-CoA synthetase; 67.4 4.9 0.00011 41.6 3.3 27 89-116 134-160 (488)
42 KOG1256 Long-chain acyl-CoA sy 66.7 18 0.0004 40.0 7.5 53 62-117 228-281 (691)
43 COG0365 Acs Acyl-coenzyme A sy 66.2 6.5 0.00014 42.3 3.9 28 87-115 168-195 (528)
44 PRK07787 acyl-CoA synthetase; 65.9 5.2 0.00011 41.3 3.2 29 89-118 127-155 (471)
45 PRK08751 putative long-chain f 65.9 5.3 0.00011 42.3 3.3 28 89-117 207-234 (560)
46 PLN02574 4-coumarate--CoA liga 65.7 6.6 0.00014 41.8 3.9 28 88-116 196-223 (560)
47 PRK07514 malonyl-CoA synthase; 65.0 5.9 0.00013 41.1 3.3 29 89-118 155-183 (504)
48 PRK07769 long-chain-fatty-acid 65.0 5.8 0.00013 42.9 3.4 28 89-117 179-206 (631)
49 PRK06164 acyl-CoA synthetase; 64.7 6.3 0.00014 41.4 3.5 29 89-118 180-208 (540)
50 PRK13388 acyl-CoA synthetase; 64.4 6.8 0.00015 41.5 3.7 29 87-116 147-175 (540)
51 TIGR02262 benz_CoA_lig benzoat 64.3 5.9 0.00013 41.3 3.2 29 89-118 160-188 (508)
52 PRK06145 acyl-CoA synthetase; 63.8 4 8.7E-05 42.3 1.8 29 87-116 146-174 (497)
53 PRK13295 cyclohexanecarboxylat 63.4 6.9 0.00015 41.4 3.6 26 90-116 197-222 (547)
54 PRK12476 putative fatty-acid-- 63.4 7.2 0.00016 42.1 3.7 28 89-117 192-219 (612)
55 PRK00174 acetyl-CoA synthetase 62.8 3.9 8.5E-05 44.3 1.6 27 89-116 244-270 (637)
56 PRK08308 acyl-CoA synthetase; 62.6 6.4 0.00014 40.0 3.0 27 90-117 101-127 (414)
57 PLN02246 4-coumarate--CoA liga 62.6 4.3 9.4E-05 42.8 1.8 28 89-117 178-205 (537)
58 TIGR02188 Ac_CoA_lig_AcsA acet 62.5 5.1 0.00011 43.3 2.4 26 90-116 236-261 (625)
59 PRK08315 AMP-binding domain pr 62.4 7.2 0.00016 41.1 3.5 27 89-116 198-224 (559)
60 PRK12582 acyl-CoA synthetase; 62.4 7.5 0.00016 42.1 3.7 28 89-117 219-246 (624)
61 TIGR03205 pimA dicarboxylate-- 62.3 8.3 0.00018 40.6 3.9 29 88-117 190-218 (541)
62 TIGR02275 DHB_AMP_lig 2,3-dihy 61.9 7.1 0.00015 41.0 3.3 30 88-118 181-210 (527)
63 PRK08008 caiC putative crotono 61.7 4.5 9.8E-05 42.2 1.8 29 88-117 171-199 (517)
64 PRK08314 long-chain-fatty-acid 61.5 7.5 0.00016 40.9 3.4 28 89-117 189-216 (546)
65 TIGR03098 ligase_PEP_1 acyl-Co 61.1 6.7 0.00015 40.7 2.9 26 91-117 162-187 (515)
66 PTZ00216 acyl-CoA synthetase; 61.1 5.9 0.00013 43.7 2.6 29 89-118 263-291 (700)
67 PRK08043 bifunctional acyl-[ac 60.1 8.3 0.00018 42.6 3.6 27 89-116 364-390 (718)
68 PRK03640 O-succinylbenzoic aci 60.0 8.1 0.00017 39.8 3.3 27 89-116 140-166 (483)
69 PTZ00237 acetyl-CoA synthetase 59.8 7.5 0.00016 42.5 3.1 26 89-115 253-278 (647)
70 PRK06155 crotonobetaine/carnit 59.4 5.3 0.00011 42.4 1.8 28 89-117 179-206 (542)
71 PRK05605 long-chain-fatty-acid 59.3 8.5 0.00019 40.9 3.4 29 87-116 216-244 (573)
72 TIGR02316 propion_prpE propion 59.2 5.1 0.00011 43.4 1.7 28 88-116 230-257 (628)
73 PRK06060 acyl-CoA synthetase; 59.2 6.4 0.00014 43.3 2.5 28 89-117 144-171 (705)
74 PLN02861 long-chain-fatty-acid 59.1 7.1 0.00015 42.8 2.8 28 89-117 219-246 (660)
75 PRK06839 acyl-CoA synthetase; 58.8 5.2 0.00011 41.3 1.6 26 90-116 149-174 (496)
76 PLN03051 acyl-activating enzym 58.7 4.9 0.00011 42.1 1.4 27 89-116 118-144 (499)
77 PLN02330 4-coumarate--CoA liga 58.7 5.4 0.00012 42.2 1.7 27 90-117 184-210 (546)
78 PRK07867 acyl-CoA synthetase; 58.5 9.4 0.0002 40.4 3.5 28 89-117 151-178 (529)
79 PRK04319 acetyl-CoA synthetase 58.5 11 0.00024 40.2 4.0 26 90-116 205-230 (570)
80 PRK07059 Long-chain-fatty-acid 58.4 8.6 0.00019 40.7 3.2 28 88-116 202-229 (557)
81 PRK09192 acyl-CoA synthetase; 57.9 8.8 0.00019 41.0 3.2 28 89-117 175-202 (579)
82 PRK06018 putative acyl-CoA syn 57.9 5.7 0.00012 42.0 1.7 26 89-115 176-201 (542)
83 PLN03102 acyl-activating enzym 57.6 5.9 0.00013 42.5 1.8 26 90-116 186-211 (579)
84 TIGR03443 alpha_am_amid L-amin 57.3 9.2 0.0002 45.6 3.5 30 88-118 413-442 (1389)
85 PRK07786 long-chain-fatty-acid 57.3 8.3 0.00018 40.7 2.9 26 90-116 174-199 (542)
86 PRK05852 acyl-CoA synthetase; 57.1 11 0.00024 39.6 3.8 25 93-118 179-203 (534)
87 PRK05620 long-chain-fatty-acid 57.0 5.9 0.00013 42.2 1.7 28 88-116 179-206 (576)
88 PLN02614 long-chain acyl-CoA s 56.8 7.5 0.00016 42.7 2.5 28 89-117 222-249 (666)
89 PRK06710 long-chain-fatty-acid 56.7 6 0.00013 42.0 1.7 27 90-117 206-232 (563)
90 PLN03052 acetate--CoA ligase; 55.4 8.8 0.00019 42.8 2.8 26 90-116 356-381 (728)
91 PLN02430 long-chain-fatty-acid 55.3 8.3 0.00018 42.3 2.5 28 89-117 219-246 (660)
92 PF00501 AMP-binding: AMP-bind 55.3 29 0.00063 34.8 6.3 29 89-118 154-182 (417)
93 PLN02654 acetate-CoA ligase 55.2 6.8 0.00015 43.0 1.8 28 88-116 273-300 (666)
94 TIGR01217 ac_ac_CoA_syn acetoa 54.7 7 0.00015 42.8 1.8 25 90-115 264-288 (652)
95 PRK06087 short chain acyl-CoA 54.4 11 0.00023 39.8 3.1 28 89-117 186-213 (547)
96 PRK07008 long-chain-fatty-acid 53.9 7.4 0.00016 41.1 1.8 28 88-116 174-201 (539)
97 PRK07768 long-chain-fatty-acid 53.8 13 0.00027 39.3 3.5 30 87-117 149-178 (545)
98 PRK10252 entF enterobactin syn 53.7 11 0.00023 44.5 3.2 29 89-118 597-625 (1296)
99 PRK06178 acyl-CoA synthetase; 53.5 7.8 0.00017 41.1 1.9 27 89-116 208-234 (567)
100 TIGR03208 cyc_hxne_CoA_lg cycl 53.2 12 0.00026 39.4 3.3 28 88-116 193-220 (538)
101 PRK03584 acetoacetyl-CoA synth 53.0 7.5 0.00016 42.3 1.7 25 90-115 263-287 (655)
102 PLN02387 long-chain-fatty-acid 52.8 9.3 0.0002 42.2 2.4 28 89-117 249-276 (696)
103 PRK08974 long-chain-fatty-acid 52.5 8.3 0.00018 40.8 1.9 29 88-117 204-232 (560)
104 PRK12583 acyl-CoA synthetase; 51.7 15 0.00033 38.6 3.8 28 89-117 200-227 (558)
105 PRK08633 2-acyl-glycerophospho 50.9 14 0.00029 42.9 3.5 28 89-117 781-808 (1146)
106 PRK05850 acyl-CoA synthetase; 50.4 9.4 0.0002 40.6 1.9 28 89-117 159-186 (578)
107 PRK10524 prpE propionyl-CoA sy 50.0 8.6 0.00019 41.5 1.6 26 89-115 232-257 (629)
108 PRK12492 long-chain-fatty-acid 48.7 15 0.00032 39.1 3.1 26 90-116 207-232 (562)
109 PRK13382 acyl-CoA synthetase; 47.9 14 0.0003 39.1 2.7 26 90-116 196-221 (537)
110 PTZ00342 acyl-CoA synthetase; 47.6 13 0.00028 41.7 2.6 28 89-117 303-330 (746)
111 PRK07798 acyl-CoA synthetase; 46.9 9.3 0.0002 39.7 1.2 22 94-116 167-188 (533)
112 PRK06188 acyl-CoA synthetase; 46.4 16 0.00036 38.1 3.0 25 92-117 170-194 (524)
113 KOG1179 Very long-chain acyl-C 46.3 11 0.00025 40.6 1.7 31 311-342 373-404 (649)
114 PLN02479 acetate-CoA ligase 44.5 11 0.00025 40.0 1.4 23 93-116 198-220 (567)
115 PRK13383 acyl-CoA synthetase; 43.8 14 0.0003 38.7 1.9 22 93-115 177-198 (516)
116 PRK06814 acylglycerophosphoeth 43.2 23 0.00049 41.3 3.8 28 88-116 791-818 (1140)
117 PRK12406 long-chain-fatty-acid 39.3 44 0.00095 34.8 4.8 27 89-116 151-177 (509)
118 PRK08162 acyl-CoA synthetase; 38.8 16 0.00035 38.4 1.5 24 92-116 184-207 (545)
119 KOG1177 Long chain fatty acid 38.3 26 0.00055 37.4 2.8 85 29-116 165-259 (596)
120 PF00659 POLO_box: POLO box du 38.1 39 0.00084 25.5 3.2 35 325-364 7-41 (68)
121 TIGR01733 AA-adenyl-dom amino 35.3 1.3E+02 0.0027 29.9 7.3 40 292-334 233-274 (408)
122 PRK12316 peptide synthase; Pro 35.3 28 0.00062 47.5 3.2 30 88-118 653-682 (5163)
123 KOG1176 Acyl-CoA synthetase [L 34.2 24 0.00051 38.2 1.9 55 292-349 298-357 (537)
124 PRK08276 long-chain-fatty-acid 31.4 41 0.00089 34.9 3.1 25 91-116 141-165 (502)
125 PF04443 LuxE: Acyl-protein sy 31.1 54 0.0012 33.6 3.8 26 90-116 89-114 (365)
126 PRK13390 acyl-CoA synthetase; 29.8 26 0.00056 36.4 1.3 19 93-112 151-169 (501)
127 PRK09088 acyl-CoA synthetase; 29.2 1.9E+02 0.0042 29.6 7.7 36 292-333 251-289 (488)
128 TIGR03208 cyc_hxne_CoA_lg cycl 28.2 1.7E+02 0.0036 30.8 7.1 38 292-333 309-348 (538)
129 TIGR03205 pimA dicarboxylate-- 27.6 2.5E+02 0.0053 29.5 8.3 37 292-333 311-350 (541)
130 PRK07788 acyl-CoA synthetase; 25.5 1.8E+02 0.0038 30.7 6.7 37 292-333 322-361 (549)
131 PRK05691 peptide synthase; Val 24.9 56 0.0012 44.1 3.2 29 89-118 1272-1300(4334)
132 PRK13391 acyl-CoA synthetase; 24.1 66 0.0014 33.5 3.1 18 93-111 157-174 (511)
133 PRK06145 acyl-CoA synthetase; 23.4 2.5E+02 0.0054 28.9 7.2 39 292-334 263-304 (497)
134 PRK06060 acyl-CoA synthetase; 23.1 2.9E+02 0.0064 30.3 8.1 38 292-333 259-299 (705)
135 PLN02860 o-succinylbenzoate-Co 23.1 1.2E+02 0.0027 32.1 5.0 39 291-333 286-327 (563)
136 PRK13295 cyclohexanecarboxylat 22.9 4.8E+02 0.01 27.4 9.4 38 291-333 310-350 (547)
137 PRK09274 peptide synthase; Pro 22.8 1.5E+02 0.0033 31.1 5.6 38 292-333 287-328 (552)
138 PRK07638 acyl-CoA synthetase; 22.4 3E+02 0.0066 28.2 7.6 34 300-334 258-293 (487)
139 PRK06839 acyl-CoA synthetase; 22.3 2.6E+02 0.0055 28.7 7.0 36 292-333 263-301 (496)
140 PRK07059 Long-chain-fatty-acid 22.2 2.8E+02 0.0061 29.1 7.5 34 300-335 331-367 (557)
141 PRK05691 peptide synthase; Val 22.0 74 0.0016 43.0 3.5 31 87-118 3866-3896(4334)
142 PRK05677 long-chain-fatty-acid 21.8 3.6E+02 0.0079 28.4 8.3 37 292-333 325-364 (562)
143 PRK07786 long-chain-fatty-acid 20.6 3.1E+02 0.0066 28.8 7.3 33 300-333 294-329 (542)
144 PF11829 DUF3349: Protein of u 20.6 1.9E+02 0.0042 23.9 4.5 51 232-284 38-90 (96)
145 cd04866 LigD_Pol_like_3 LigD_P 20.3 73 0.0016 30.4 2.2 50 85-135 120-171 (223)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=1.7e-101 Score=810.62 Aligned_cols=396 Identities=39% Similarity=0.664 Sum_probs=373.3
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCccc
Q 015052 9 DVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT 88 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~ 88 (414)
++++.++.++..++||.++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+|+++||.++|||
T Consensus 20 ~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~ 99 (612)
T PLN02620 20 KNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILC 99 (612)
T ss_pred chHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCccC
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999679999
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCeeeccccccc
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVY 167 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~G~~S~~~~ 167 (414)
++||.+|++|||||+|++|+||+|+++++.++.++.+|..++++.+| +..||.||+++.+.+.+|++|||+|++|+..+
T Consensus 100 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y 179 (612)
T PLN02620 100 SKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYY 179 (612)
T ss_pred CCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhh
Confidence 99999999999999889999999999999888889999999999888 88999999999999999999999999999999
Q ss_pred cCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015052 168 RSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVL 247 (414)
Q Consensus 168 ~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~~dI~~Gt~ 247 (414)
++..|+.+|......|++|.+++.++|..+++||||||+|+++++|..++++|+++|+++++.|+++|++||+||++|++
T Consensus 180 ~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~l 259 (612)
T PLN02620 180 KSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTI 259 (612)
T ss_pred hhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99998877766566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhCCCCcccccc
Q 015052 248 SSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADY 327 (414)
Q Consensus 248 ~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~~~Y 327 (414)
+++++++++|++|+++|+|||++|++|+++|.++ ||+|++++|||||++|+||+||+|++|+++|+.|+|++|+++.+|
T Consensus 260 s~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y 338 (612)
T PLN02620 260 DSQITDPSVREAVMKILKPDPKLADFVEAECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMY 338 (612)
T ss_pred CccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccc
Confidence 9999999999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccc----------cccCCCCceeccCCcccCCeEEEEEec
Q 015052 328 GSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLES----------QVLCIEPKPVGLTEVKVGEEYEIIVTN 397 (414)
Q Consensus 328 ~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~----------~~~~~~~~tl~l~ele~G~~YelViTt 397 (414)
+||||+||||++|.++++.++|+|+|+++||||||++ +.+. ....+++++|+++|||+|++|||||||
T Consensus 339 ~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt 416 (612)
T PLN02620 339 ASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVH--RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT 416 (612)
T ss_pred cccceEEEeccCCCCCcccceeeecCCcEEEEEeecc--CcccccccccccccccccccCccccHHHccCCCeEEEEEEe
Confidence 9999999999999998888999999999999999987 4211 001246789999999999999999999
Q ss_pred CcchhhhccC
Q 015052 398 VAVAGSLFSR 407 (414)
Q Consensus 398 ~~GLyRY~~~ 407 (414)
.+|||||++.
T Consensus 417 ~~GLyRYrlG 426 (612)
T PLN02620 417 YAGLYRYRVG 426 (612)
T ss_pred cCceEEEecC
Confidence 9999999873
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=6e-99 Score=792.75 Aligned_cols=403 Identities=38% Similarity=0.647 Sum_probs=374.1
Q ss_pred CCccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHc
Q 015052 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIID 80 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~ 80 (414)
|||..+..++++.++.++..++||.++|+++|++||++|++|+|||+|.| +|+++++||++|||++|||++|||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~~~-~i~~~e~Fk~~VPv~~Yedl~pyI~Ri~~ 79 (606)
T PLN02247 1 MLPSYDPNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSFLD-GESDKQSFKNKVPVVNYEDIKPCIERIAN 79 (606)
T ss_pred CCCccCCcchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhhhhcCc-cCCCHHHHHHhCCCccHHHhHHHHHHHHc
Confidence 88888888889999999999999999999999999999999999999955 89999999999999999999999999999
Q ss_pred CCCCCcccCcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCee
Q 015052 81 GDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNA 159 (414)
Q Consensus 81 Ge~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~ 159 (414)
||.+++++++||.+|++|||||+|++|+||+|+++++....++.+|..++++..| +..||.||+++.+++.+|++|+|+
T Consensus 80 Ge~~~llt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~ 159 (606)
T PLN02247 80 GESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMA 159 (606)
T ss_pred CCCCceeCCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcccCcEEEEEecCcCccCCCCccc
Confidence 9954556699999999999999889999999999998877779999999999877 889999999999999999999999
Q ss_pred eccccccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHH
Q 015052 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELC 239 (414)
Q Consensus 160 G~~S~~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~ 239 (414)
|++|+.++++..|+.++......|++|.+++.++|..|++||||||||++++++..++++|+++++++++.|+++|++||
T Consensus 160 g~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we~L~ 239 (606)
T PLN02247 160 RPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELC 239 (606)
T ss_pred ccccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 99999999998887766543468999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHhccCCCCCCcHHHHHHHhccC-CCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhC
Q 015052 240 DDIREGVLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (414)
Q Consensus 240 ~dI~~Gt~~~~i~~~~~R~~l~~~l-~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~ 318 (414)
+||++|++++++++|++|+++.+.+ .|||++|++|+++|.+. ||.|++++|||||++|+||+||+|++|+++|+.|+|
T Consensus 240 ~DI~~G~ls~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~~-~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~g 318 (606)
T PLN02247 240 SNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGK-SWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFYSG 318 (606)
T ss_pred HHHhcCCcccccCCHHHHHHHhhcccCCCHHHHHHHHHHhccc-CccccHHHhCCCCcEEEEECCCCHHHHHHHHHHHcC
Confidence 9999999999999999999999999 69999999999999885 999999999999999999999999999999999999
Q ss_pred CCCcccccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCcccc----------c-----cCCCCceeccC
Q 015052 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQ----------V-----LCIEPKPVGLT 383 (414)
Q Consensus 319 ~vpi~~~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~----------~-----~~~~~~tl~l~ 383 (414)
++|+++.+|+||||+||||++|.++++.++|+|+||++||||||++ +.+.. + ..+++++|+++
T Consensus 319 glpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 396 (606)
T PLN02247 319 GLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVD--KNNGEVIHFVQCNGTDDDDDALKEDLEIVDLV 396 (606)
T ss_pred CCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecC--CCcccccccccccccccccccccccCceecHH
Confidence 9999999999999999999999988888899999999999999988 43210 0 02356799999
Q ss_pred CcccCCeEEEEEecCcchhhhccC
Q 015052 384 EVKVGEEYEIIVTNVAVAGSLFSR 407 (414)
Q Consensus 384 ele~G~~YelViTt~~GLyRY~~~ 407 (414)
|||+|++|||||||.+|||||++.
T Consensus 397 evk~G~~YelVvTt~~GLYRYrlG 420 (606)
T PLN02247 397 DVKVGHYYELVVTTFTGLYRYRVG 420 (606)
T ss_pred HccCCCeEEEEEEecCceEEEecC
Confidence 999999999999999999999863
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=1e-93 Score=758.30 Aligned_cols=391 Identities=39% Similarity=0.653 Sum_probs=358.7
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCccc
Q 015052 9 DVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT 88 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~ 88 (414)
+.++.++.++..++||+++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+|+++||.++|||
T Consensus 19 ~~~~~l~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~gf~~i~~~~~F~~~VPv~~Yedl~pyIeRi~~Ge~~~vL~ 98 (597)
T PLN02249 19 KDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKRFDLNGAVDRKTFKSKVPVVTYEDLKTEIQRISNGDRSPILS 98 (597)
T ss_pred cHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCceeC
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999998666999
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH--HHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCeeeccccc
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME--TTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTN 165 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~--~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~G~~S~~ 165 (414)
++||.+|++|||||+|++|+||||+++++ .+..++.+|. .+...| ++.||.|++++...+.+|.+|+|+|++++.
T Consensus 99 ~~pi~~f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~--~~~~~~~l~~Gk~l~~~~~~~~~~t~gG~p~~~~~~~ 176 (597)
T PLN02249 99 SHPITEFLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMPV--MNLYVPGLDKGKGLYFLFVKSESKTSGGLPARPALTS 176 (597)
T ss_pred CCchhhhcccCCCCCCceeEEeccHHHHHHHHHHHHHHHHH--HhccCCccccCcEEEEEeccccccCCCCCccCccccc
Confidence 99999999999999999999999999998 3444566663 333356 888999998988889999999999999988
Q ss_pred cccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015052 166 VYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG 245 (414)
Q Consensus 166 ~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~~dI~~G 245 (414)
++++..|+..+ +...|++|.+++.+.|.++++||||||||+.++++..|++.||+.++++++.|+++|++||+||++|
T Consensus 177 ~~~~~~f~~~~--~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~weel~~dI~~g 254 (597)
T PLN02249 177 YYKSDHFRTSD--YDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWKELAQDISTG 254 (597)
T ss_pred ccccccccccc--ccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777665443 3678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHhccC-CCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhCCCCccc
Q 015052 246 VLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMS 324 (414)
Q Consensus 246 t~~~~i~~~~~R~~l~~~l-~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~ 324 (414)
+++.+++++++|..|..++ .|+|++|++|+++|++. +|+|++++|||||++|+||+||+|.+|+++|++|+|++|+++
T Consensus 255 ~~~~~~~~~~~~~~v~~i~g~P~~~la~~i~~~~~~~-~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~~~~~ 333 (597)
T PLN02249 255 TLSSKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQE-NWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMAS 333 (597)
T ss_pred CCcccccchHHHHHHHhhcCCCCHHHHHHHHHHhccc-cccccHHHhCCCCCeEEEEecCChHHHHHHHHHHcCCCcccc
Confidence 9999999999999999988 79999999999999875 899999999999999999999999999999999999999999
Q ss_pred ccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEecCcchhhh
Q 015052 325 ADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSL 404 (414)
Q Consensus 325 ~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViTt~~GLyRY 404 (414)
++|+||||+||||+++.++++.++|+|+||++||||||++ +.++ ...+++++|+++|||+|++|+|||||++|||||
T Consensus 334 ~~Y~ASEg~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~--~~~~-~~~~~~~~v~l~eVe~G~~Y~lVvTT~~GLyRY 410 (597)
T PLN02249 334 TIYASSESYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHN--HDGD-GALDETSLVELADVEVGKEYELVITTYAGLYRY 410 (597)
T ss_pred ccccccceEEEeecCCCCCCCCcceEecCCcEEEEeeecc--cCCc-ccCCCCcEecHHHcCCCCeEEEEEEcccceeEe
Confidence 9999999999999999888877899999999999999988 5431 012578899999999999999999999999999
Q ss_pred ccC
Q 015052 405 FSR 407 (414)
Q Consensus 405 ~~~ 407 (414)
+..
T Consensus 411 ~iG 413 (597)
T PLN02249 411 RVG 413 (597)
T ss_pred ecC
Confidence 863
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=5.1e-92 Score=742.08 Aligned_cols=364 Identities=37% Similarity=0.626 Sum_probs=288.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhh--hhhcCCCcccCcchHHHHHHHcCCCCCcccCc
Q 015052 13 LIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPES--FKSCVPLVTHEDLQPYIQRIIDGDISPILTGK 90 (414)
Q Consensus 13 ~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~--Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~~~ 90 (414)
.+++|++.++||+++|+++|++||++|++|+|||+|||++|+|++| ||++|||++||||+|||+||++|| .+|||++
T Consensus 2 ~l~~f~~~~~~~~~~Q~~~L~~iL~~n~~T~yGr~~gf~~i~s~ed~~Fr~~VPi~~Yed~~pyIeR~~~Ge-~~vL~~~ 80 (528)
T PF03321_consen 2 VLKRFEKATKNPEQVQEEVLREILRRNADTEYGRDHGFAGIRSVEDESFRKRVPITDYEDYRPYIERIAEGE-ENVLTPG 80 (528)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCTTSHHHHCTT--S----HHHHHHHHS--BEHHHHHHHHHHHHTT---CCTSSS
T ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHhhccCHhHHhcCCCCCCCcchHHHHHhCCCccHHHHHHHHHHHhcCC-CCCCCCC
Confidence 4789999999999999999999999999999999999999999999 999999999999999999999999 6799999
Q ss_pred ccceEecccCCCCCCcccCcCChHHHHHHH--HHHHHHHHHHhccCC-C-CCCceE--EEeccCCcccCCCCCeeecccc
Q 015052 91 PITTISRSSGTTQGKPKFLPFNDELMETTL--QIFRTSYAFRNREFP-I-GKGKAL--QFIYGSKQSKTKGGLNAGTATT 164 (414)
Q Consensus 91 pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~--~~~~~~~~~~~~~~p-~-~~gk~l--~~~~~~~~~~t~~Gip~G~~S~ 164 (414)
||.+|+.||||||+++|+||||+++++++. .++.+|..++++++| . ..||.+ .+.+.+...+|++|+|+|++|+
T Consensus 81 ~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi~~g~~s~ 160 (528)
T PF03321_consen 81 PPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGIPIGSISG 160 (528)
T ss_dssp --SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-EEE-HHH
T ss_pred CCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCeEEecccc
Confidence 999999999999555999999999998866 558888888999999 5 579944 4444567888999999999999
Q ss_pred ccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHHHHHHh
Q 015052 165 NVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244 (414)
Q Consensus 165 ~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~~dI~~ 244 (414)
+.+++ .+.++...|++|.+++.+.|..+++||||+|+|++++||++|+++||++|+.++++|+++|+++|+||++
T Consensus 161 ~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~dI~~ 235 (528)
T PF03321_consen 161 IPYRM-----IPPWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEELVEDIRD 235 (528)
T ss_dssp HHHT-------SCCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-----ChHHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHHhcC
Confidence 99885 3444456899999999999999999999999999778999999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhCCCCccc
Q 015052 245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMS 324 (414)
Q Consensus 245 Gt~~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~ 324 (414)
|+++ .++|||+||++|+++|.+ | .+++++|||||++|+||++|+|++|+++|++|+|++|+++
T Consensus 236 G~~~--------------~~~p~p~rA~~L~~~~~~--~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~ 298 (528)
T PF03321_consen 236 GTLS--------------LLRPNPERAAELRAEFEK--G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQS 298 (528)
T ss_dssp TS----------------C-S--HHHHHHHHHHHCC--S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE
T ss_pred Cccc--------------cCCCCHHHHHHHHHhhcc--c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceee
Confidence 9988 568999999999999998 6 7899999999999999999999999999999999999999
Q ss_pred ccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEecCcchhhh
Q 015052 325 ADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSL 404 (414)
Q Consensus 325 ~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViTt~~GLyRY 404 (414)
++|+||||+||||+++.. .+|+|+|+++||||||++ +.+++ ..+++++++++|||+|++|||||||.+|||||
T Consensus 299 ~~y~ASEg~i~i~~~~~~----~~~~l~~~~~ffEFip~~--~~~~~-~~~~~~~l~~~ele~G~~YelviTt~~GLyRY 371 (528)
T PF03321_consen 299 KGYGASEGFIGIPLDPED----PGYVLAPDSGFFEFIPVD--EDEQN-PSEQPKTLLLHELEVGEEYELVITTNSGLYRY 371 (528)
T ss_dssp -EEEETTEEEEEES-CCC------EEE-TTSSEEEEEE-S--TT--------SSSEEGGG--TT-EEEEEEESTTS-SSE
T ss_pred ccccccceEEEEecCCCC----CceEeecCCeEEEEEecc--CCccc-ccCCCceecHHHhcCCCeEEEEEecccceeee
Confidence 999999999999999655 369999999999999998 54411 12679999999999999999999999999999
Q ss_pred cc
Q 015052 405 FS 406 (414)
Q Consensus 405 ~~ 406 (414)
++
T Consensus 372 ~i 373 (528)
T PF03321_consen 372 RI 373 (528)
T ss_dssp EE
T ss_pred ec
Confidence 97
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=98.67 E-value=5.8e-07 Score=92.58 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=65.9
Q ss_pred hcHHHHHHHHHHHHH-HHcCCChhhhhcCCC-------CCCChhhhhhcCCCcccCcchHHHH-HHHcCCCCCcccCccc
Q 015052 22 KDAERIQRETLRKIL-EENASAEYLQNLGLN-------GRTDPESFKSCVPLVTHEDLQPYIQ-RIIDGDISPILTGKPI 92 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL-~~~~~T~yGk~~~f~-------~i~s~e~Fr~~VPl~~Yed~~pyIe-R~~~Ge~~~ll~~~pi 92 (414)
+.-++.|++-|+.++ ...+++.|-|+| |+ .|.+.+|+++ +|+++=++++.-.. ++.... .+.+
T Consensus 21 ~eL~~lq~~rl~~~~k~~yeNsPfYr~~-f~~~~v~p~~i~~l~Dl~k-lP~t~K~~lre~ypf~~~~~~------~~~i 92 (438)
T COG1541 21 KELEKLQEKRLKSTVKYVYENSPFYRKK-FKEAGVDPDDIKTLEDLAK-LPFTTKDDLRENYPFGDFAVP------KEEI 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHcCCChHHhhCHHHHHh-CCCCcHHHHHHhCCccccccc------ccce
Confidence 345677888888877 567899999888 64 5678899986 99999999876544 333322 2345
Q ss_pred ceEecccCCCCCCcccCcCChHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
..+..||||| |+++.+|||..-..
T Consensus 93 ~~ihaSSGTT-GkPt~~~~t~~D~~ 116 (438)
T COG1541 93 VRIHASSGTT-GKPTVFGYTAKDIE 116 (438)
T ss_pred EEEEccCCCC-CCceeeecCHHHHH
Confidence 5689999999 99999999998654
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=98.66 E-value=4.7e-07 Score=94.38 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=65.1
Q ss_pred hcHHHHHHHHHHHHHHHc-CCChhhhhc----CCC--CCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCcc--cCccc
Q 015052 22 KDAERIQRETLRKILEEN-ASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPIL--TGKPI 92 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~~-~~T~yGk~~----~f~--~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll--~~~pi 92 (414)
..-++.|.+-|+++|+.+ +++.|-|++ |++ +|++.+|+++ +|+++=+|++..-.. ..+.-..+ ..+.+
T Consensus 12 ~~l~~~q~~rl~~~l~~a~~~spfYr~~~~~~g~~p~~i~sl~dl~~-lP~~~k~~lr~~~p~--~~~~~~~~~~~~~~i 88 (445)
T TIGR03335 12 GELDALVEERIRYTVHYAAEHSPFYKKWFQENNISPSDIKSHEDLLE-LPVISGEVIRKNQPP--VTDDFMFKSADWKDI 88 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHHH-CCCCCHHHHHhcCCc--cccccccccCCHHHe
Confidence 345678999999999866 578888874 664 7899999987 999987777532100 00100111 23445
Q ss_pred ceEecccCCCCCCcccCcCChHHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
..+..||||| |++|.+++|++.+..
T Consensus 89 ~~i~~TSGTT-G~Pk~v~~T~~dl~~ 113 (445)
T TIGR03335 89 YTIHETSGTS-GTPKSFFLTWDDWKR 113 (445)
T ss_pred EEEEeCCCCC-CCcceeeecHHHHHH
Confidence 5778899999 899999999887643
No 7
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=98.56 E-value=4.1e-06 Score=86.26 Aligned_cols=87 Identities=17% Similarity=0.331 Sum_probs=65.0
Q ss_pred hcHHHHHHHHHHHHHHHc-CCChhhhhc----CC--CCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCcc--cCccc
Q 015052 22 KDAERIQRETLRKILEEN-ASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPIL--TGKPI 92 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~~-~~T~yGk~~----~f--~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll--~~~pi 92 (414)
++-++.|.+.|+++|+.+ +++.|-|++ |+ ++|.|.+||++ +|+++-++++.. .+ ..++ ..+.+
T Consensus 6 ~~l~~~q~~~l~~~~~~a~~~~pfYr~~~~~~~i~~~~i~~~~dl~~-lP~~~K~~l~~~------~~-~~~~~~~~~~~ 77 (422)
T TIGR02155 6 DELRALQTQRLKWTVKHAYENVPHYRKAFDAAGVHPDDLQSLSDLAK-FPFTQKHDLRDN------YP-FGLFAVPREQV 77 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHHH-CCCCcHHHHhhc------CC-CcccCCChHHc
Confidence 456788999999999886 578888875 44 36889999986 999997777532 12 1233 33445
Q ss_pred ceEecccCCCCCCcccCcCChHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++..||||| |++|.+++|+..+.
T Consensus 78 ~~~~~TSGTT-G~Pk~v~~t~~~~~ 101 (422)
T TIGR02155 78 VRIHASSGTT-GKPTVVGYTQNDID 101 (422)
T ss_pred EEEEECCCCC-CCCeEeccCHHHHH
Confidence 5677999999 89999999998653
No 8
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=98.06 E-value=0.00014 Score=75.84 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=60.7
Q ss_pred hcHHHHHHHHHHHHHHHc-CCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHcCC--------------CCCc
Q 015052 22 KDAERIQRETLRKILEEN-ASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGD--------------ISPI 86 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~~-~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge--------------~~~l 86 (414)
+..++.|++-|+++|+.+ +++-|-|++. ++ +++ +.|+.+=+++....+++.... .+..
T Consensus 22 ~~l~~~Q~~rL~~ll~~a~~~sPfYr~~~--~~----~l~-~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a~~~e~~r~ 94 (430)
T TIGR02304 22 EALENWQAKQLEKFLQFVLSHSPWFQRYH--TI----PFN-QWPMMDKALMMEHFDELNTAGLKKDEALDCAMRSEKTRD 94 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhcc--CC----CHH-HCCCcCHHHHHHHHHHhhccCCChhhhhHHhhhhhhhcc
Confidence 356788999999999877 8999999873 33 455 489999888877777765211 1111
Q ss_pred ccC--cccceEecccCCCCCCcccCcCChHHH
Q 015052 87 LTG--KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 87 l~~--~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..+ +.+ ....||||| |++=.+-++++..
T Consensus 95 f~~~~~~~-~v~~TSGSS-G~p~~f~~~~~~~ 124 (430)
T TIGR02304 95 FKPCVGNI-SVGLSSGTS-GRRGLFVVSPEEQ 124 (430)
T ss_pred cccccCcE-EEEECCCCC-CCceEEEECHHHH
Confidence 111 333 567899999 8999999988764
No 9
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=95.15 E-value=0.12 Score=53.55 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.3
Q ss_pred cccceEecccCCCCCCcccCcCChHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+-+.+...||||| |.+|-++.|...+.
T Consensus 143 ~~~~~i~~TSGTT-G~PK~v~~t~~~~~ 169 (503)
T PRK04813 143 DDNYYIIFTSGTT-GKPKGVQISHDNLV 169 (503)
T ss_pred CCcEEEEECCCCC-CCCcEEEeehHHHH
Confidence 3345788999999 89999999998754
No 10
>PRK07529 AMP-binding domain protein; Validated
Probab=94.73 E-value=0.32 Score=52.86 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.4
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.++..||||| |++|-++.|...+
T Consensus 211 ~~d~~a~i~~TSGTT-G~PK~v~~sh~~l 238 (632)
T PRK07529 211 GPDDVAAYFHTGGTT-GMPKLAQHTHGNE 238 (632)
T ss_pred CcCceEEEEECCCcc-CcCCEEEEcHHHH
Confidence 345567899999999 8999999998765
No 11
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=94.69 E-value=0.94 Score=46.98 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.8
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
+..+.+.+...||||| |.+|.|++|...+..
T Consensus 164 ~~~~~~~~i~~TSGtT-G~PK~v~~t~~~l~~ 194 (521)
T PRK06187 164 IDENDAAAMLYTSGTT-GHPKGVVLSHRNLFL 194 (521)
T ss_pred CCccceEEEEECCCCC-CCCceEEeehHHHHH
Confidence 3444567889999999 899999999987643
No 12
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=93.95 E-value=1.7 Score=46.21 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+.
T Consensus 182 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~ 209 (539)
T PRK06334 182 PEDVAVILFTSGTE-KLPKGVPLTHANLL 209 (539)
T ss_pred cCCEEEEEECCCCC-CCCCEEEEcHHHHH
Confidence 34556889999999 89999999998763
No 13
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=92.45 E-value=1.5 Score=47.97 Aligned_cols=87 Identities=24% Similarity=0.364 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCC-hHHHHHHHHhHhCCCCcccccccccceeeeecCCCCCCcc
Q 015052 267 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS-MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPE 345 (414)
Q Consensus 267 ~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~-~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~igi~~~~~~~~~ 345 (414)
|--..+.|++.++. +++ -++++|+ ..+...++=+-.| +|+. .|||-||..=++..++..
T Consensus 340 d~LVf~Kir~~lGg-------------ri~--~~~sGGa~l~~~~~~f~~~lG-i~i~-eGYGlTEts~~~~v~~~~--- 399 (613)
T COG1022 340 DRLVFRKIRDALGG-------------RIR--YALSGGAPLSPELLHFFRSLG-IPIL-EGYGLTETSAVVSVNPPD--- 399 (613)
T ss_pred hHHHHHHHHHHhCC-------------cEE--EEEecCCcCCHHHHHHHHHcC-CCeE-EEecccccccceEEcccc---
Confidence 33456667766663 233 3444444 4444333322233 8999 999999987555554322
Q ss_pred cceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEec
Q 015052 346 LATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN 397 (414)
Q Consensus 346 ~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViTt 397 (414)
.|.+ + ..++++.-.|++.+++=||.|-.
T Consensus 400 -------------~~~~-g----------tvG~p~p~~evKI~d~GEilVRG 427 (613)
T COG1022 400 -------------RFVL-G----------TVGKPLPGIEVKIADDGEILVRG 427 (613)
T ss_pred -------------Cccc-C----------CcCCcCCCceEEEccCceEEEec
Confidence 1111 1 33677888899999999999866
No 14
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=91.92 E-value=1 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+-+.+...||||| |.+|-++.|.+.+.
T Consensus 140 ~~~~~~il~TSGTT-G~PK~v~~s~~~~~ 167 (502)
T TIGR01734 140 GDDNYYIIYTSGST-GNPKGVQISHDNLV 167 (502)
T ss_pred CCCeEEEEECCCCC-CCCCEEEEecHHHH
Confidence 33456899999999 89999999998864
No 15
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.96 E-value=0.29 Score=50.33 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.8
Q ss_pred cccceEecccCCCCCCcccCcCChHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
+.+.+|.+|.||| |.+|+||-|+.-
T Consensus 189 ~~vA~fqLSGGTT-GtPKLIPRtH~D 213 (542)
T COG1021 189 GEVAFFQLSGGTT-GTPKLIPRTHND 213 (542)
T ss_pred CceEEEEecCCCC-CCCccccccccc
Confidence 3388999999999 899999998864
No 16
>PRK12467 peptide synthase; Provisional
Probab=86.42 E-value=2.8 Score=55.34 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=25.1
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+.+|.+.+..
T Consensus 654 ~~~~~a~iiyTSGST-G~PKgV~~th~~l~~ 683 (3956)
T PRK12467 654 DPDNLAYVIYTSGST-GQPKGVAISHGALAN 683 (3956)
T ss_pred CCCCeEEEEECCCCC-CCcCEEEEecHHHHH
Confidence 455567899999999 899999999988644
No 17
>PRK12467 peptide synthase; Provisional
Probab=84.53 E-value=2.1 Score=56.55 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.4
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++-+.+...||||| |++|-+.+|++.+..
T Consensus 3236 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 3264 (3956)
T PRK12467 3236 GENLAYVIYTSGST-GKPKGVGVRHGALAN 3264 (3956)
T ss_pred CCceEEEEEccCCC-CCcceeeehhHHHHH
Confidence 44567899999999 899999999987644
No 18
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=81.58 E-value=2.4 Score=43.57 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=35.4
Q ss_pred CChhhhhhcCCCcccCcchHHHHHHHcCCCCCcccCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 54 TDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 54 ~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.|||--..+ .+.+|+|=+.++.+ + . ..+...||||| |+||-+..|.+.+..
T Consensus 70 ~~~~~~~~~~~-----~~~~~~~~~~~~~~-~----~-~~~i~~TSGTT-G~PKgV~~sh~~l~~ 122 (386)
T TIGR02372 70 TGTEDYLLVRR-----RIGEWVDLIAHHST-P----T-ARFTFATSGST-GTPKPVTHSWAALLS 122 (386)
T ss_pred cchhhhhhhhc-----cHHHHHHHHHhcCC-C----C-ceEEEECCCCC-CCCceeEeeHHHHHH
Confidence 44566643333 56777777766552 1 1 24567899999 899999999987643
No 19
>PRK12316 peptide synthase; Provisional
Probab=80.21 E-value=4 Score=55.23 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.3
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++-+.+...||||| |++|-+.+|++.+..
T Consensus 4692 ~~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 4721 (5163)
T PRK12316 4692 HPDNLAYVIYTSGST-GRPKGVAVSHGSLVN 4721 (5163)
T ss_pred CCCceEEEEECCCCC-CCCCEeeeccHHHHH
Confidence 344556889999999 899999999987643
No 20
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=76.99 E-value=2 Score=42.69 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.2
Q ss_pred cccceEecccCCCCCCcccCcCChHHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
+.+.+...||||| |++|-+..|.+.+..
T Consensus 35 ~d~a~il~TSGTT-G~PKgv~~s~~~l~~ 62 (358)
T PRK07824 35 DDVALVVATSGTT-GTPKGAMLTAAALTA 62 (358)
T ss_pred CCeEEEEeCCCCC-CCCCEEEecHHHHHH
Confidence 3456889999999 899999999887643
No 21
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=76.44 E-value=2.6 Score=44.48 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++-+.++..||||| |++|-|+.|++.+..
T Consensus 181 ~~~~a~i~~TSGTT-G~PKgV~~s~~~l~~ 209 (536)
T PRK10946 181 ADEVAFFQLSGGST-GTPKLIPRTHNDYYY 209 (536)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 44566889999999 899999999998643
No 22
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=75.86 E-value=2.4 Score=44.08 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=22.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.......||||| |.+|-+..|.+.+-
T Consensus 119 ~~~~~~i~~TSGTT-G~PKgV~~t~~~l~ 146 (452)
T PRK07445 119 LETGWIMIPTGGSS-GQIRFAIHTWETLT 146 (452)
T ss_pred CCCcEEEEeCCCCC-CCCcEEEechHHHH
Confidence 34455677899999 89999999988753
No 23
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=74.99 E-value=2.6 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=24.2
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+..+.+.++..||||| |.+|.|+.|.+.+.
T Consensus 108 ~~~~~~~~i~~TSGtT-G~PK~v~~s~~~~~ 137 (436)
T TIGR01923 108 FNMDQIATLMFTSGTT-GKPKAVPHTFRNHY 137 (436)
T ss_pred CCcCceEEEEeCCCCC-CCCcEEEEehHHHH
Confidence 3344566889999999 89999999998753
No 24
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=74.74 E-value=2.1 Score=43.20 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=52.4
Q ss_pred cCCCCceeEEEecCChHHHHHHHHhHhCCCCccccccccccee-eeecC---CCCCCcccceeeecCCceEEEeeecCCC
Q 015052 291 LFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGW-IGANV---NPSLPPELATFAVLPNIGYFEFIPQRLG 366 (414)
Q Consensus 291 lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~-igi~~---~~~~~~~~~~~~l~p~~~ffEFIp~~~~ 366 (414)
-+++|+.|.+....-...-.+++++.++.++++ ..||+||+. ++... .....++..+ .+.|+ .-.+.+..+
T Consensus 275 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~ivd~~-- 349 (417)
T PF00501_consen 275 DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPGSVG-KPLPG-VEVKIVDPN-- 349 (417)
T ss_dssp TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTTSEB-EESTT-EEEEEECTT--
T ss_pred ccccccccccccccCChhhccccccccccccce-ecccccccceeeeccccccccccccccc-ccccc-ccccccccc--
Confidence 356688555422222666677888888886777 899999995 44422 1111122223 34453 333555322
Q ss_pred CccccccCCCCceeccCCcccCCeEEEEEecC---cchhh
Q 015052 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AVAGS 403 (414)
Q Consensus 367 ~~~~~~~~~~~~tl~l~ele~G~~YelViTt~---~GLyR 403 (414)
. . ..|..|+.-||+|+.. .|.|+
T Consensus 350 ~---------~-----~~~~~g~~Gei~i~~~~~~~gy~~ 375 (417)
T PF00501_consen 350 T---------G-----EPLPPGEPGEIVIRGPNVFSGYYN 375 (417)
T ss_dssp T---------S-----SBESTTSEEEEEEESTTSBSEETT
T ss_pred c---------c-----ccccccccccccccCCccceeeec
Confidence 1 1 2346888899999854 35544
No 25
>PRK09274 peptide synthase; Provisional
Probab=73.75 E-value=3.4 Score=43.69 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=23.8
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++.+.+...||||| |++|-+..|.+.+.
T Consensus 172 ~~~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 200 (552)
T PRK09274 172 APDDMAAILFTSGST-GTPKGVVYTHGMFE 200 (552)
T ss_pred CCCCeEEEEECCCCC-CCCceEEecHHHHH
Confidence 344566889999999 89999999998753
No 26
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=72.85 E-value=2.1 Score=45.63 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |++|-+..|++.+
T Consensus 170 ~~~~~a~i~~TSGTT-G~PKgV~~s~~~~ 197 (563)
T PLN02860 170 APDDAVLICFTSGTT-GRPKGVTISHSAL 197 (563)
T ss_pred CCCCeEEEEecCCCC-CCCceEEeehHHH
Confidence 345567899999999 8999999999865
No 27
>PRK08316 acyl-CoA synthetase; Validated
Probab=72.40 E-value=4.3 Score=42.16 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.9
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+..+.+.+...||||| |++|.+..|.+.+
T Consensus 168 ~~~~~~a~i~~TSGtT-G~PK~v~~s~~~l 196 (523)
T PRK08316 168 LADDDLAQILYTSGTE-SLPKGAMLTHRAL 196 (523)
T ss_pred CCCCCeEEEEeCCCCC-CCCcEEEEecHHH
Confidence 3445566899999999 8999999998875
No 28
>PRK07470 acyl-CoA synthetase; Validated
Probab=71.46 E-value=2.2 Score=44.77 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=23.9
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..+.+.+...||||| |.+|.++.|...+
T Consensus 161 ~~~~~a~i~~TSGTT-G~PK~v~~s~~~l 188 (528)
T PRK07470 161 DHDDPCWFFFTSGTT-GRPKAAVLTHGQM 188 (528)
T ss_pred CCCCeEEEEeCCCCC-CCCcEEEEehhhH
Confidence 445567899999999 9999999999876
No 29
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=70.96 E-value=3.5 Score=42.39 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=23.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++.+.+...||||| |++|-+..|.+.+-
T Consensus 133 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~~~ 161 (458)
T PRK09029 133 QPQRLATMTLTSGST-GLPKAAVHTAQAHL 161 (458)
T ss_pred CCCCeEEEEECCCCC-CCCCEEEEeHHHHH
Confidence 344456899999999 89999999988753
No 30
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.54 E-value=4.1 Score=43.43 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=24.9
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
+.++-+.....||||| |.+|-.+.|++.+-.
T Consensus 168 ~~~~d~a~i~yTSGTT-G~PKgv~~th~~~~~ 198 (534)
T COG0318 168 VDPDDLAFLLYTSGTT-GLPKGVVLTHRNLLA 198 (534)
T ss_pred CCCCCEEEEEeCCCCC-CCCCEeEEecHhHHH
Confidence 3355567888999999 999999999987643
No 31
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=70.39 E-value=4 Score=42.33 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=24.8
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+..+.+.+...||||| |.+|.++.|...+.
T Consensus 163 ~~~~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 192 (513)
T PRK07656 163 VDPDDVADILFTSGTT-GRPKGAMLTHRQLL 192 (513)
T ss_pred CCCCceEEEEeCCCCC-CCCCEEEEecHHHH
Confidence 4555567889999999 99999999988753
No 32
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=70.21 E-value=4.4 Score=43.11 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.4
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-|..|.+.+.
T Consensus 206 ~~d~a~i~~TSGTT-G~PKgv~~s~~~l~ 233 (562)
T PRK05677 206 ADDVAVLQYTGGTT-GVAKGAMLTHRNLV 233 (562)
T ss_pred ccCEEEEEeCCCCC-CCCcEEEEehhHHH
Confidence 34556889999999 99999999998763
No 33
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=69.48 E-value=4.6 Score=42.61 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=23.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |++|-+..|.+.+-
T Consensus 151 ~~d~a~i~~TSGTT-G~PKgV~~th~~~~ 178 (525)
T PRK05851 151 SGGPAVLQGTAGST-GTPRTAILSPGAVL 178 (525)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEecHHHHH
Confidence 34456889999999 89999999988753
No 34
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=69.47 E-value=4.3 Score=40.62 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=23.7
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+.+.+...||||| |++|.+..|.+.+..
T Consensus 119 ~~~~~~i~~TSGTt-G~pK~v~~s~~~~~~ 147 (408)
T TIGR01733 119 PDDLAYVIYTSGST-GRPKGVVVTHRSLVN 147 (408)
T ss_pred CCCcEEEEEcCCCC-CCCCEEEeccHHHHH
Confidence 34456889999999 899999999987643
No 35
>PRK07638 acyl-CoA synthetase; Validated
Probab=69.22 E-value=4.4 Score=41.98 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceEecccCCCCCCcccCcCChHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+...||||| |++|-+..|++.+.
T Consensus 146 a~i~~TSGtT-G~PKgv~~s~~~~~ 169 (487)
T PRK07638 146 FYMGFTSGST-GKPKAFLRAQQSWL 169 (487)
T ss_pred EEEEeCCCCC-CCCcEEEEecHHHH
Confidence 5789999999 99999999998753
No 36
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=69.13 E-value=3.7 Score=44.06 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=23.8
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+.+.+...||||| |++|-|..|+..+..
T Consensus 198 ~~~~a~il~TSGTT-G~PKgV~~sh~~l~~ 226 (600)
T PRK08279 198 AKDTAFYIYTSGTT-GLPKAAVMSHMRWLK 226 (600)
T ss_pred ccccEEEEEcCCCC-CCCcEEEEeHHHHHH
Confidence 34456889999999 899999999987643
No 37
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=69.02 E-value=4.1 Score=44.01 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+-
T Consensus 208 ~~d~a~ilyTSGTT-G~PKgV~~sh~~l~ 235 (614)
T PRK08180 208 PDTIAKFLFTSGST-GLPKAVINTHRMLC 235 (614)
T ss_pred cCceEEEEECCCCC-CCCCEEEeehHHHH
Confidence 45566889999999 89999999988753
No 38
>PRK05857 acyl-CoA synthetase; Validated
Probab=68.19 E-value=2.8 Score=44.36 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..+.+.++..||||| |.+|-|..|+..+
T Consensus 167 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~~ 194 (540)
T PRK05857 167 GSEDPLAMIFTSGTT-GEPKAVLLANRTF 194 (540)
T ss_pred CCCCeEEEEeCCCCC-CCCCeEEEechhh
Confidence 344567899999999 9999999999865
No 39
>PLN02736 long-chain acyl-CoA synthetase
Probab=67.99 E-value=4 Score=44.51 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |++|-++.|++.+-
T Consensus 220 ~dd~a~IlyTSGTT-G~PKGV~lsh~~l~ 247 (651)
T PLN02736 220 PEDVATICYTSGTT-GTPKGVVLTHGNLI 247 (651)
T ss_pred ccceEEEEEcCCCC-CCCcEEEEecHHHH
Confidence 44556889999999 89999999998753
No 40
>PRK07788 acyl-CoA synthetase; Validated
Probab=67.71 E-value=4.2 Score=42.96 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=21.4
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+...+...||||| |++|-+..|+..+
T Consensus 207 ~~~~~i~~TSGTT-G~PKgv~~s~~~~ 232 (549)
T PRK07788 207 KPGGIVILTSGTT-GTPKGAPRPEPSP 232 (549)
T ss_pred CCCcEEEECCCCC-CCCCEEeccCccH
Confidence 3445777899999 8999999998865
No 41
>PRK09088 acyl-CoA synthetase; Validated
Probab=67.42 E-value=4.9 Score=41.58 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.7
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.+.+.+...||||| |++|-++.|.+.+
T Consensus 134 ~~~~~~i~~TSGTT-G~PK~v~~s~~~l 160 (488)
T PRK09088 134 PERVSLILFTSGTS-GQPKGVMLSERNL 160 (488)
T ss_pred CCCceEEEeCCCCC-CCCcEEEEehHHH
Confidence 34456889999999 9999999998875
No 42
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=66.68 E-value=18 Score=39.98 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=32.7
Q ss_pred cCCCcccCcchHHHHHHHcCCCCC-cccCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 62 CVPLVTHEDLQPYIQRIIDGDISP-ILTGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 62 ~VPl~~Yed~~pyIeR~~~Ge~~~-ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.|+|-+|+++..-=+ .+..... --.++-+.....||||| |.||=.=.|++.+-
T Consensus 228 gv~v~S~~e~~~lG~--~~~~~~~~~p~p~d~atI~yTSGTT-G~PKGVMLTH~Niv 281 (691)
T KOG1256|consen 228 GVEVYSWDEFEELGK--KNQRKPRVPPKPDDLATICYTSGTT-GNPKGVMLTHRNIV 281 (691)
T ss_pred CeEEEEHHHHHhhcc--cccCCCCCCCCccceEEEEEcCCCC-CCCceEEEecccee
Confidence 367777777653211 0111111 22445566788999999 89998888887653
No 43
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=66.16 E-value=6.5 Score=42.34 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=22.5
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
+.++-+.+...||||| |+||-|--|...
T Consensus 168 ~~~~dpl~ilYTSGTT-G~PKgv~H~~gg 195 (528)
T COG0365 168 LPADDPLFLLYTSGTT-GKPKGIVHSHGG 195 (528)
T ss_pred cCCCCeEEEEeCCCCC-CCCceEEEeCch
Confidence 4444445899999999 999999998874
No 44
>PRK07787 acyl-CoA synthetase; Validated
Probab=65.91 E-value=5.2 Score=41.35 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=23.6
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++-+.+...||||| |.+|-|..|+..+..
T Consensus 127 ~~~~a~i~~TSGTT-G~PK~v~~t~~~l~~ 155 (471)
T PRK07787 127 PDAPALIVYTSGTT-GPPKGVVLSRRAIAA 155 (471)
T ss_pred CCceEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 34456889999999 899999999987643
No 45
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=65.85 E-value=5.3 Score=42.28 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+-+.+...||||| |++|-|.+|...+-
T Consensus 207 ~~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 234 (560)
T PRK08751 207 PDDIAFLQYTGGTT-GVAKGAMLTHRNLV 234 (560)
T ss_pred cccEEEEEcCCCCC-CCCCEEEEccHHHH
Confidence 34456889999999 99999999998753
No 46
>PLN02574 4-coumarate--CoA ligase-like
Probab=65.67 E-value=6.6 Score=41.79 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.5
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |.+|-+..|...+
T Consensus 196 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~~ 223 (560)
T PLN02574 196 KQDDVAAIMYSSGTT-GASKGVVLTHRNL 223 (560)
T ss_pred CcCCEEEEEcCCCcc-CCCcEEEEeHHHH
Confidence 445567899999999 8999999998875
No 47
>PRK07514 malonyl-CoA synthase; Validated
Probab=65.04 E-value=5.9 Score=41.08 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.9
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-|..|...+..
T Consensus 155 ~~~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 183 (504)
T PRK07514 155 ADDLAAILYTSGTT-GRSKGAMLSHGNLLS 183 (504)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEecHHHHH
Confidence 44456889999999 899999999987643
No 48
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=65.00 E-value=5.8 Score=42.95 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+.
T Consensus 179 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 206 (631)
T PRK07769 179 EDTIAYLQYTSGST-RIPAGVQITHLNLP 206 (631)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEcHHHHH
Confidence 34556889999999 89999999988753
No 49
>PRK06164 acyl-CoA synthetase; Validated
Probab=64.73 E-value=6.3 Score=41.45 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.4
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+.+.+...||||| |++|-+..|+..+..
T Consensus 180 ~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 208 (540)
T PRK06164 180 PDAGALLFTTSGTT-SGPKLVLHRQATLLR 208 (540)
T ss_pred CCceEEEEECCCCC-CCCcEEEEehHHHHH
Confidence 34556777799999 899999999988643
No 50
>PRK13388 acyl-CoA synthetase; Provisional
Probab=64.37 E-value=6.8 Score=41.50 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.4
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..++.+.+...||||| |++|-+..|...+
T Consensus 147 ~~~~~~a~i~~TSGTT-G~PKgv~~s~~~~ 175 (540)
T PRK13388 147 VDAMDPFMLIFTSGTT-GAPKAVRCSHGRL 175 (540)
T ss_pred CCCCCeEEEEECCCCC-CCCCEEEecHHHH
Confidence 3456677899999999 8999999998875
No 51
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=64.28 E-value=5.9 Score=41.27 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=24.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+..|.+.+..
T Consensus 160 ~~~~a~i~~TSGTT-G~PK~v~~s~~~~~~ 188 (508)
T TIGR02262 160 ADDPAFWLYSSGST-GMPKGVVHTHSNPYW 188 (508)
T ss_pred CCCcEEEEeCCCCC-CCCcEEEEechhHHH
Confidence 45567889999999 899999999987643
No 52
>PRK06145 acyl-CoA synthetase; Validated
Probab=63.79 E-value=4 Score=42.30 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.8
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..++.+.+...||||| |++|-++.|.+.+
T Consensus 146 ~~~~~~a~i~~TSGTT-G~PK~v~~s~~~~ 174 (497)
T PRK06145 146 VAPTDLVRLMYTSGTT-DRPKGVMHSYGNL 174 (497)
T ss_pred CCccceEEEEeCCCCC-CCCcEEEEecHHH
Confidence 3445566889999999 8999999999865
No 53
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=63.44 E-value=6.9 Score=41.36 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.1
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+-+.+...||||| |++|-+..|...+
T Consensus 197 ~~~a~i~~TSGTT-G~PK~v~~s~~~l 222 (547)
T PRK13295 197 DDVTQLIYTSGTT-GEPKGVMHTANTL 222 (547)
T ss_pred cceeEEEeCCCCC-CCCCEEEeccHHH
Confidence 4456888999999 8999999999865
No 54
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=63.37 E-value=7.2 Score=42.10 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.4
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|++.+.
T Consensus 192 ~~d~a~i~yTSGTT-G~PKgV~~sh~~l~ 219 (612)
T PRK12476 192 TDDVSHLQYTSGST-RPPVGVEITHRAVG 219 (612)
T ss_pred CCceEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 34456889999999 89999999998763
No 55
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=62.78 E-value=3.9 Score=44.31 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=22.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++-+.+...||||| |++|-+..|+..+
T Consensus 244 ~~d~a~i~~TSGTT-G~PKgV~~s~~~~ 270 (637)
T PRK00174 244 AEDPLFILYTSGST-GKPKGVLHTTGGY 270 (637)
T ss_pred CCCcEEEEECCCCC-CCCceEEeCcchh
Confidence 34456889999999 8999999998754
No 56
>PRK08308 acyl-CoA synthetase; Validated
Probab=62.57 E-value=6.4 Score=40.00 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=22.3
Q ss_pred cccceEecccCCCCCCcccCcCChHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+...+...||||| |++|-+..|.+.+.
T Consensus 101 ~~~~~i~~TSGtT-G~PKgv~~s~~~l~ 127 (414)
T PRK08308 101 EEPSLLQYSSGTT-GEPKLIRRSWTEID 127 (414)
T ss_pred CCceEEEECCCCC-CCCcEEEEehHhHH
Confidence 3445788899999 89999999988764
No 57
>PLN02246 4-coumarate--CoA ligase
Probab=62.56 E-value=4.3 Score=42.75 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.9
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+.
T Consensus 178 ~~~~~~i~~TSGtT-G~PKgv~~s~~~l~ 205 (537)
T PLN02246 178 PDDVVALPYSSGTT-GLPKGVMLTHKGLV 205 (537)
T ss_pred ccCEEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 34456788999999 89999999988653
No 58
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=62.48 E-value=5.1 Score=43.26 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=21.7
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+-+.+...||||| |++|-|..|...+
T Consensus 236 ~~~a~il~TSGTT-G~PKgV~~s~~~~ 261 (625)
T TIGR02188 236 EDPLFILYTSGST-GKPKGVLHTTGGY 261 (625)
T ss_pred CCceEEEecCCCC-CCCCeEEECccHh
Confidence 3456899999999 8999999998753
No 59
>PRK08315 AMP-binding domain protein; Validated
Probab=62.41 E-value=7.2 Score=41.13 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.+.+.+...||||| |.+|-|+.|...+
T Consensus 198 ~~~~a~i~~TSGtT-G~PK~v~~s~~~l 224 (559)
T PRK08315 198 PDDPINIQYTSGTT-GFPKGATLTHRNI 224 (559)
T ss_pred CCCcEEEEEcCCCC-CCcceEEeeHHHH
Confidence 44456899999999 8999999999876
No 60
>PRK12582 acyl-CoA synthetase; Provisional
Probab=62.37 E-value=7.5 Score=42.07 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=22.9
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|+..+.
T Consensus 219 ~~d~a~i~yTSGTT-G~PKgV~~th~~l~ 246 (624)
T PRK12582 219 PDTVAKYLFTSGST-GMPKAVINTQRMMC 246 (624)
T ss_pred CCceEEEEEcCCCC-CCCceEEeeHHHHH
Confidence 34456789999999 89999999988653
No 61
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=62.34 E-value=8.3 Score=40.64 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=23.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++.+.+...||||| |++|-+..|++.+.
T Consensus 190 ~~~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 218 (541)
T TIGR03205 190 TPDDVALLQYTGGTT-GLPKGAMLTHGNLT 218 (541)
T ss_pred CccCeEEEEECCCCC-CCCcEEEEeHHHHH
Confidence 344556889999999 89999999998764
No 62
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=61.88 E-value=7.1 Score=41.00 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.3
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++-+.+...||||| |.+|-+..|+..+..
T Consensus 181 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 210 (527)
T TIGR02275 181 KSDEVAFFQLSGGST-GTPKLIPRTHNDYYY 210 (527)
T ss_pred CCCccEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 344566889999999 999999999987643
No 63
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=61.68 E-value=4.5 Score=42.23 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=24.1
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
..+.+.+...||||| |++|-+..|...+-
T Consensus 171 ~~~~~a~i~~TSGtT-G~PK~v~~t~~~l~ 199 (517)
T PRK08008 171 STDDTAEILFTSGTT-SRPKGVVITHYNLR 199 (517)
T ss_pred CCCCeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 345567899999999 99999999998763
No 64
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=61.48 E-value=7.5 Score=40.88 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+-
T Consensus 189 ~~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 216 (546)
T PRK08314 189 PDDLAVLPYTSGTT-GVPKGCMHTHRTVM 216 (546)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 34456889999999 89999999998764
No 65
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=61.12 E-value=6.7 Score=40.70 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.2
Q ss_pred ccceEecccCCCCCCcccCcCChHHHH
Q 015052 91 PITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 91 pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+.+...||||| |++|-|+.|...+.
T Consensus 162 ~~~~i~~TSGTT-G~PK~v~~t~~~l~ 187 (515)
T TIGR03098 162 DMAAILYTSGST-GRPKGVVLSHRNLV 187 (515)
T ss_pred CeEEEEECCCCC-CCCceEEEecHHHH
Confidence 345788999999 89999999998764
No 66
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=61.11 E-value=5.9 Score=43.73 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++-+.+...||||| |++|-+..|++.+-.
T Consensus 263 ~~d~a~iiyTSGTT-G~PKGV~lth~nl~~ 291 (700)
T PTZ00216 263 NDDLALIMYTSGTT-GDPKGVMHTHGSLTA 291 (700)
T ss_pred cccEEEEEEeCCCC-CcCcEEEEEhHHHHH
Confidence 45567889999999 899999999987643
No 67
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=60.15 E-value=8.3 Score=42.63 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.7
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++-+.+...||||| |++|-+..|+..+
T Consensus 364 ~~d~a~i~~TSGTT-G~PKgv~~sh~~l 390 (718)
T PRK08043 364 PEDAALILFTSGSE-GHPKGVVHSHKSL 390 (718)
T ss_pred CCCeEEEEECCCCC-CCCCEEEEcHHHH
Confidence 34456889999999 8999999999875
No 68
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=60.04 E-value=8.1 Score=39.80 Aligned_cols=27 Identities=37% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.+-+.+...||||| |++|-|+.|...+
T Consensus 140 ~~~~a~i~~TSGtT-G~PK~v~~s~~~~ 166 (483)
T PRK03640 140 LDEVATIMYTSGTT-GKPKGVIQTYGNH 166 (483)
T ss_pred CCCeEEEEeCCCcC-CCCcEEEEecHHH
Confidence 34456788999999 8999999998754
No 69
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=59.78 E-value=7.5 Score=42.47 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=21.7
Q ss_pred CcccceEecccCCCCCCcccCcCChHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
++-+.+...||||| |++|-|..|...
T Consensus 253 ~~d~~~IlyTSGTT-G~PKgV~~sh~~ 278 (647)
T PTZ00237 253 SSHPLYILYTSGTT-GNSKAVVRSNGP 278 (647)
T ss_pred CCCcEEEEEcCCCC-CCCCeEEEcCcH
Confidence 34456899999999 899999999875
No 70
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=59.40 E-value=5.3 Score=42.38 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=22.9
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|...+.
T Consensus 179 ~~~~a~il~TSGTT-G~PK~V~~t~~~~~ 206 (542)
T PRK06155 179 PGDTAAILYTSGTT-GPSKGVCCPHAQFY 206 (542)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEEHHHHH
Confidence 34456788999999 89999999998753
No 71
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=59.27 E-value=8.5 Score=40.88 Aligned_cols=29 Identities=34% Similarity=0.384 Sum_probs=24.0
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
...+.+.+...||||| |++|-|..|++.+
T Consensus 216 ~~~~~~a~i~~TSGTT-G~PK~v~~s~~~l 244 (573)
T PRK05605 216 PTPDDVALILYTSGTT-GKPKGAQLTHRNL 244 (573)
T ss_pred CCCCCEEEEEcCCCCC-CCCcEEEEecHHH
Confidence 3445566889999999 8999999999875
No 72
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=59.20 E-value=5.1 Score=43.44 Aligned_cols=28 Identities=32% Similarity=0.248 Sum_probs=22.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |++|-|..|...+
T Consensus 230 ~~~~~a~ilyTSGTT-G~PKgV~~sh~~~ 257 (628)
T TIGR02316 230 ESNEPSYILYTSGTT-GKPKGVQRDVGGY 257 (628)
T ss_pred CCCCcEEEEECCCCC-CCCceEEECCcHH
Confidence 344556899999999 8999999887754
No 73
>PRK06060 acyl-CoA synthetase; Validated
Probab=59.19 E-value=6.4 Score=43.33 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+.+|++.+.
T Consensus 144 ~~~~a~il~TSGST-G~PKgV~~sh~~~~ 171 (705)
T PRK06060 144 GDALAYATYTSGTT-GPPKAAIHRHADPL 171 (705)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEccccHH
Confidence 34466889999999 89999999988753
No 74
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=59.07 E-value=7.1 Score=42.78 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |.||=+..|+..+-
T Consensus 219 ~dd~a~i~yTSGTT-G~PKGV~lth~~l~ 246 (660)
T PLN02861 219 KTDICTIMYTSGTT-GEPKGVILTNRAII 246 (660)
T ss_pred CCceEEEEecCCCC-CCCCEEEEecHHHH
Confidence 34456889999999 99999999998753
No 75
>PRK06839 acyl-CoA synthetase; Validated
Probab=58.80 E-value=5.2 Score=41.34 Aligned_cols=26 Identities=42% Similarity=0.438 Sum_probs=22.2
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+.+...||||| |.+|-+.+|...+
T Consensus 149 ~~~~~i~~TSGTT-G~PK~v~~s~~~l 174 (496)
T PRK06839 149 SASFIICYTSGTT-GKPKGAVLTQENM 174 (496)
T ss_pred CCcEEEEeCCCCC-CCCcEEEEEhHHH
Confidence 4456888999999 8999999999875
No 76
>PLN03051 acyl-activating enzyme; Provisional
Probab=58.74 E-value=4.9 Score=42.09 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=22.7
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++.+.+...||||| |++|-+..|++.+
T Consensus 118 ~~d~a~i~yTSGTT-G~PKgV~~sh~~~ 144 (499)
T PLN03051 118 VESVTNILFSSGTT-GEPKAIPWTHLSP 144 (499)
T ss_pred ccceEEEEeCCCCC-CCCceEEEccchH
Confidence 34566889999999 8999999998864
No 77
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=58.70 E-value=5.4 Score=42.19 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.6
Q ss_pred cccceEecccCCCCCCcccCcCChHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+.+.+...||||| |++|-++.|+..+.
T Consensus 184 ~~~a~il~TSGTT-G~PKgv~~s~~~l~ 210 (546)
T PLN02330 184 TDLCALPFSSGTT-GISKGVMLTHRNLV 210 (546)
T ss_pred ccEEEEEeCCCCc-CCCcEEEEehHHHH
Confidence 4456888999999 89999999988753
No 78
>PRK07867 acyl-CoA synthetase; Validated
Probab=58.47 E-value=9.4 Score=40.35 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |++|-+..|.+.+.
T Consensus 151 ~~~~~~i~~TSGTT-G~PKgv~~s~~~l~ 178 (529)
T PRK07867 151 PDDLFMLIFTSGTS-GDPKAVRCTHRKVA 178 (529)
T ss_pred ccceEEEEECCCCC-CCCcEEEecHHHHH
Confidence 34455889999999 89999999998763
No 79
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=58.47 E-value=11 Score=40.16 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=21.9
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+-+.+...||||| |++|-|..|...+
T Consensus 205 ~~~a~i~~TSGTT-G~PKgV~~s~~~l 230 (570)
T PRK04319 205 EDGAILHYTSGST-GKPKGVLHVHNAM 230 (570)
T ss_pred CCCEEEEeCCCCC-CCCCEEEEecHHH
Confidence 3456888999999 8999999998865
No 80
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=58.41 E-value=8.6 Score=40.71 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.5
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |.+|-+.+|+..+
T Consensus 202 ~~~~~a~il~TSGTT-G~PK~v~~s~~~l 229 (557)
T PRK07059 202 GPDDVAFLQYTGGTT-GVSKGATLLHRNI 229 (557)
T ss_pred CcCceEEEEeCCCCC-CCCcEEEeecHHH
Confidence 344567899999999 8999999999865
No 81
>PRK09192 acyl-CoA synthetase; Validated
Probab=57.92 E-value=8.8 Score=41.00 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |.+|-+.+|.+.+.
T Consensus 175 ~~~~a~i~~TSGTT-G~PKgv~~sh~~~~ 202 (579)
T PRK09192 175 PDDIAYLQYSSGST-RFPRGVIITHRALM 202 (579)
T ss_pred CCCeEEEEecCCCC-CCCceEEeeHHHHH
Confidence 34456888999999 99999999998764
No 82
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=57.85 E-value=5.7 Score=41.98 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
.+.+.+...||||| |.+|-|..|+..
T Consensus 176 ~~~~~~i~~TSGTT-G~PKgv~~s~~~ 201 (542)
T PRK06018 176 ENTAAGMCYTSGTT-GDPKGVLYSHRS 201 (542)
T ss_pred ccceeeEEecCCCC-CCCcEEEEechh
Confidence 34455788899999 899999999774
No 83
>PLN03102 acyl-activating enzyme; Provisional
Probab=57.65 E-value=5.9 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.7
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+.+...||||| |.+|-|..|...+
T Consensus 186 ~d~~~il~TSGTT-G~PK~v~~s~~~~ 211 (579)
T PLN03102 186 HDPISLNYTSGTT-ADPKGVVISHRGA 211 (579)
T ss_pred CCcEEEEeCCcCC-CCCCEEEEecHHH
Confidence 3456889999999 8999999998754
No 84
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=57.32 E-value=9.2 Score=45.56 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=24.5
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++-+.+...||||| |+||-|.+|++.+..
T Consensus 413 ~~~d~a~ii~TSGST-G~PKgV~~sh~~l~~ 442 (1389)
T TIGR03443 413 GPDSNPTLSFTSGSE-GIPKGVLGRHFSLAY 442 (1389)
T ss_pred CCCCceEEEECCCCC-CCCCEEEeccHHHHH
Confidence 344456899999999 899999999987643
No 85
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=57.28 E-value=8.3 Score=40.73 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=21.7
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+-+.+...||||| |++|-|..|.+.+
T Consensus 174 ~~~a~i~~TSGTT-G~PK~v~~s~~~l 199 (542)
T PRK07786 174 DSPALIMYTSGTT-GRPKGAVLTHANL 199 (542)
T ss_pred CCeEEEEeCCCCC-ccchhhhhhHHHH
Confidence 3345788999999 8999999998865
No 86
>PRK05852 acyl-CoA synthetase; Validated
Probab=57.10 E-value=11 Score=39.61 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.7
Q ss_pred ceEecccCCCCCCcccCcCChHHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+...||||| |++|-|+.|++.+..
T Consensus 179 a~il~TSGTT-G~PKgv~~~~~~~~~ 203 (534)
T PRK05852 179 AMIMFTGGTT-GLPKMVPWTHANIAS 203 (534)
T ss_pred eEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 5889999999 899999999987643
No 87
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=57.03 E-value=5.9 Score=42.25 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.4
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.++..||||| |++|-+-.|.+.+
T Consensus 179 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~l 206 (576)
T PRK05620 179 DETTAAAICYSTGTT-GAPKGVVYSHRSL 206 (576)
T ss_pred CccceeEEEECCCCC-CCCceEEEEcHHH
Confidence 445567899999999 8999999998765
No 88
>PLN02614 long-chain acyl-CoA synthetase
Probab=56.77 E-value=7.5 Score=42.72 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=23.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |+||=+..|++.+-
T Consensus 222 ~~d~a~I~yTSGTT-G~PKGV~lth~nl~ 249 (666)
T PLN02614 222 KSDICTIMYTSGTT-GDPKGVMISNESIV 249 (666)
T ss_pred CCceEEEEEcCCCC-CCCcEEEEecHHHH
Confidence 45566889999999 89999999998753
No 89
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=56.66 E-value=6 Score=41.98 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred cccceEecccCCCCCCcccCcCChHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+.+.++..||||| |.+|-|..|.+.+.
T Consensus 206 ~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 232 (563)
T PRK06710 206 NDLALLQYTGGTT-GFPKGVMLTHKNLV 232 (563)
T ss_pred CCEEEEEcCCCCC-CCCceEEEehHHHH
Confidence 3456889999999 89999999988763
No 90
>PLN03052 acetate--CoA ligase; Provisional
Probab=55.44 E-value=8.8 Score=42.79 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=22.0
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+-+.+...||||| |++|-|..|...+
T Consensus 356 d~~a~IlyTSGTT-G~PKgVv~sh~~~ 381 (728)
T PLN03052 356 EAFTNILFSSGTT-GEPKAIPWTQLTP 381 (728)
T ss_pred CCcEEEEecCCCC-CCCceEEECchHH
Confidence 4456889999999 8999999998754
No 91
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=55.31 E-value=8.3 Score=42.34 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=23.6
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.....||||| |++|-+..|++.+.
T Consensus 219 ~~d~a~iiyTSGTT-G~PKGV~lth~~~~ 246 (660)
T PLN02430 219 PLDICTIMYTSGTS-GDPKGVVLTHEAVA 246 (660)
T ss_pred cCceEEEEECCCCC-CCCCEEEeecHHHH
Confidence 45567899999999 89999999988753
No 92
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=55.27 E-value=29 Score=34.83 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=24.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |.+|.|++|.+.+-.
T Consensus 154 ~~~~~~i~~TSGTT-G~pK~v~~t~~~~~~ 182 (417)
T PF00501_consen 154 PDDPAFILFTSGTT-GKPKGVVLTHRNLLA 182 (417)
T ss_dssp TTSEEEEEEESSSS-SSEEEEEEEHHHHHH
T ss_pred ccceeEeecccccc-ccccccccccccccc
Confidence 34556888999999 899999999987643
No 93
>PLN02654 acetate-CoA ligase
Probab=55.22 E-value=6.8 Score=42.98 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
..+-+.+...||||| |++|-|..|+..+
T Consensus 273 ~~~d~~~ilyTSGTT-G~PKgVv~sh~~~ 300 (666)
T PLN02654 273 DAEDPLFLLYTSGST-GKPKGVLHTTGGY 300 (666)
T ss_pred CCCCceEEEecCCCC-CCCceEEecccHH
Confidence 344456899999999 8999999988753
No 94
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=54.67 E-value=7 Score=42.75 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=21.2
Q ss_pred cccceEecccCCCCCCcccCcCChHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
+-+.+...||||| |++|-|..|...
T Consensus 264 ~d~~~ilyTSGTT-G~PKgV~~sh~~ 288 (652)
T TIGR01217 264 DHPLWILFSSGTT-GLPKCIVHSAGG 288 (652)
T ss_pred CCCEEEEEcCCCC-CCCCeEEecccH
Confidence 3446899999999 899999999875
No 95
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=54.41 E-value=11 Score=39.84 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=23.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+.+.+...||||| |++|-+.+|...+-
T Consensus 186 ~~d~a~i~~TSGTT-G~PK~v~~t~~~l~ 213 (547)
T PRK06087 186 GDELAAVLFTSGTE-GLPKGVMLTHNNIL 213 (547)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 34456788999999 89999999998753
No 96
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.86 E-value=7.4 Score=41.14 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.2
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |.+|-|.+|+..+
T Consensus 174 ~~~~~~~i~~TSGTT-G~PK~v~~s~~~~ 201 (539)
T PRK07008 174 DENQASSLCYTSGTT-GNPKGALYSHRST 201 (539)
T ss_pred CcccceEEEECCCCC-CCCcEEEEecHHH
Confidence 445567899999999 8999999998754
No 97
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.79 E-value=13 Score=39.26 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.4
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
..++-+.+...||||| |++|-+..|++.+.
T Consensus 149 ~~~~~~a~i~~TSGtT-G~PKgv~~s~~~~~ 178 (545)
T PRK07768 149 TGEDDLALMQLTSGST-GSPKAVQITHGNLY 178 (545)
T ss_pred CCCCCEEEEEeCCCCC-CCCceEEEcHHHHH
Confidence 3445567889999999 99999999998763
No 98
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=53.72 E-value=11 Score=44.51 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+.+|++.+..
T Consensus 597 ~~~~a~i~~TSGST-G~PKgV~~~h~~l~~ 625 (1296)
T PRK10252 597 PHHTAYIIFTSGST-GRPKGVMVGQTAIVN 625 (1296)
T ss_pred CCCeEEEEECCCCC-CCCCEEEeccHHHHH
Confidence 44567889999999 899999999987643
No 99
>PRK06178 acyl-CoA synthetase; Validated
Probab=53.49 E-value=7.8 Score=41.13 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++-+.+...||||| |.+|-+..|...+
T Consensus 208 ~~~~a~i~~TSGTT-G~PK~v~~t~~~~ 234 (567)
T PRK06178 208 LDALAALNYTGGTT-GMPKGCEHTQRDM 234 (567)
T ss_pred CCCeEEEEeCCCCC-CCCceEEeccHHH
Confidence 44556899999999 9999999999865
No 100
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=53.21 E-value=12 Score=39.39 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=22.9
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |.+|-+..+.+.+
T Consensus 193 ~~~~~a~i~~TSGtT-G~PK~v~~s~~~~ 220 (538)
T TIGR03208 193 SPDDVTQLIYTSGTT-GEPKGVMHTANTL 220 (538)
T ss_pred CCCCeEEEEECCCCC-CCCcEEEeehHHH
Confidence 344556888999999 8999999998765
No 101
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=53.01 E-value=7.5 Score=42.30 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=21.0
Q ss_pred cccceEecccCCCCCCcccCcCChHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
+-+.+...||||| |++|-+..|...
T Consensus 263 ~~~a~ilyTSGTT-G~PKgV~~sh~~ 287 (655)
T PRK03584 263 DHPLWILYSSGTT-GLPKCIVHGHGG 287 (655)
T ss_pred CCcEEEEecCCCC-CCCceEEECccH
Confidence 3345889999999 899999999864
No 102
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=52.76 E-value=9.3 Score=42.24 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.....||||| |++|-+..|++.+-
T Consensus 249 ~dd~a~I~yTSGTT-G~PKGV~lth~~l~ 276 (696)
T PLN02387 249 PNDIAVIMYTSGST-GLPKGVMMTHGNIV 276 (696)
T ss_pred ccceEEEEecCCCC-CCCCEEEEEcHHHH
Confidence 44556889999999 89999999998753
No 103
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=52.53 E-value=8.3 Score=40.83 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=23.8
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
..+-+.+...||||| |++|-+..|...+.
T Consensus 204 ~~~~~a~i~~TSGtT-G~PK~v~~t~~~l~ 232 (560)
T PRK08974 204 VPEDLAFLQYTGGTT-GVAKGAMLTHRNML 232 (560)
T ss_pred CCCCeEEEEECCCCC-CCCcEEEEchHHHH
Confidence 344566889999999 89999999988763
No 104
>PRK12583 acyl-CoA synthetase; Provisional
Probab=51.74 E-value=15 Score=38.57 Aligned_cols=28 Identities=29% Similarity=0.263 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.+...||||| |.+|-+..|...+.
T Consensus 200 ~~~~a~i~~TSGsT-G~PK~v~~s~~~l~ 227 (558)
T PRK12583 200 RDDPINIQYTSGTT-GFPKGATLSHHNIL 227 (558)
T ss_pred CCCcEEEEECCCCC-CCCceEEeeHHHHH
Confidence 34456889999999 99999999998763
No 105
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=50.95 E-value=14 Score=42.85 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|++.+-
T Consensus 781 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~ 808 (1146)
T PRK08633 781 PDDTATIIFSSGSE-GEPKGVMLSHHNIL 808 (1146)
T ss_pred CCCEEEEEECCCCC-CCCceEEechHHHH
Confidence 44556889999999 89999999998753
No 106
>PRK05850 acyl-CoA synthetase; Validated
Probab=50.40 E-value=9.4 Score=40.63 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=23.2
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.+-+.+...||||| |++|-+..|+..+-
T Consensus 159 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 186 (578)
T PRK05850 159 LPSTAYLQYTSGST-RTPAGVMVSHRNVI 186 (578)
T ss_pred CCCeEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 34456899999999 89999999988753
No 107
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=50.00 E-value=8.6 Score=41.54 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=21.4
Q ss_pred CcccceEecccCCCCCCcccCcCChHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
++.+.+...||||| |++|-|..|...
T Consensus 232 ~~d~a~il~TSGTT-G~PKgV~~~~~~ 257 (629)
T PRK10524 232 SNEPSYILYTSGTT-GKPKGVQRDTGG 257 (629)
T ss_pred CCCceEEEeecCCC-CCCceEEECCcH
Confidence 34456899999999 899999887765
No 108
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=48.73 E-value=15 Score=39.08 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.1
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+.+...||||| |.+|-+..|.+.+
T Consensus 207 ~~~a~i~~TSGTT-G~PKgv~~s~~~l 232 (562)
T PRK12492 207 DDIAVLQYTGGTT-GLAKGAMLTHGNL 232 (562)
T ss_pred CCeEEEEeCCCCC-CCCceEEEechhH
Confidence 3456889999999 8999999998765
No 109
>PRK13382 acyl-CoA synthetase; Provisional
Probab=47.87 E-value=14 Score=39.10 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=20.9
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+...+...||||| |++|-+-+|...+
T Consensus 196 ~~~~~il~TSGTT-G~PKgv~~s~~~~ 221 (537)
T PRK13382 196 RKGRVILLTSGTT-GTPKGARRSGPGG 221 (537)
T ss_pred CCCeEEEECCCCC-CCCCEEEeccchH
Confidence 3445777799999 8999999998554
No 110
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=47.62 E-value=13 Score=41.68 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++-+.....||||| |.||=+..|++.+-
T Consensus 303 ~dd~a~IiYTSGTT-G~PKGVmlTH~nl~ 330 (746)
T PTZ00342 303 PDFITSIVYTSGTS-GKPKGVMLSNKNLY 330 (746)
T ss_pred ccceEEEEEcCCCC-CCCCEEEEccHHHH
Confidence 44467899999999 89999999988753
No 111
>PRK07798 acyl-CoA synthetase; Validated
Probab=46.91 E-value=9.3 Score=39.71 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEecccCCCCCCcccCcCChHHH
Q 015052 94 TISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 94 ~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+...||||| |.+|-+.+|.+.+
T Consensus 167 ~i~~TSGTT-G~PK~v~~s~~~~ 188 (533)
T PRK07798 167 YLLYTGGTT-GMPKGVMWRQEDI 188 (533)
T ss_pred EEEECCCCC-CCCcEEEEecHHH
Confidence 678899999 8999999999865
No 112
>PRK06188 acyl-CoA synthetase; Validated
Probab=46.36 E-value=16 Score=38.11 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.1
Q ss_pred cceEecccCCCCCCcccCcCChHHHH
Q 015052 92 ITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 92 i~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+.+...||||| |.+|-+..|...+.
T Consensus 170 ~a~i~~TSGtT-G~pk~v~~s~~~l~ 194 (524)
T PRK06188 170 IAGLAYTGGTT-GKPKGVMGTHRSIA 194 (524)
T ss_pred eEEEEeCCCCC-CCCceeeeehHHHH
Confidence 67889999999 89999999998754
No 113
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=46.30 E-value=11 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHHHhHhCCCCcccccccccceeeee-cCCCCC
Q 015052 311 KKLRHYAGDLPLMSADYGSSEGWIGA-NVNPSL 342 (414)
Q Consensus 311 ~~l~~~~~~vpi~~~~Y~ASEg~igi-~~~~~~ 342 (414)
+++.+.||. +-..+.|+||||-+++ |++.+.
T Consensus 373 ~~Fv~RFg~-~~IgE~YgaTEgn~~~~N~d~~v 404 (649)
T KOG1179|consen 373 QQFVKRFGI-IKIGEFYGATEGNSNLVNYDGRV 404 (649)
T ss_pred HHHHHHcCC-CeEEEEeccccCcceeeeecCcc
Confidence 345566766 4455999999997754 666543
No 114
>PLN02479 acetate-CoA ligase
Probab=44.54 E-value=11 Score=40.03 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred ceEecccCCCCCCcccCcCChHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++..||||| |++|-+.+|.+.+
T Consensus 198 ~~i~yTSGTT-G~PKgV~~sh~~~ 220 (567)
T PLN02479 198 IALGYTSGTT-ASPKGVVLHHRGA 220 (567)
T ss_pred eEEEECCCCC-CCCcEEEeccHHH
Confidence 3689999999 8999999997754
No 115
>PRK13383 acyl-CoA synthetase; Provisional
Probab=43.81 E-value=14 Score=38.70 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=18.3
Q ss_pred ceEecccCCCCCCcccCcCChHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDEL 115 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~ 115 (414)
.+...||||| |++|-+..|..+
T Consensus 177 ~~il~TSGTT-G~PK~v~~s~~~ 198 (516)
T PRK13383 177 RIVLLTSGTT-GKPKGVPRAPQL 198 (516)
T ss_pred cEEEECCCCC-CCCCeeeecchh
Confidence 4567799999 999999988764
No 116
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=43.20 E-value=23 Score=41.26 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |++|-+..|++.+
T Consensus 791 ~~~d~a~i~~TSGTT-G~PKgv~~sh~~~ 818 (1140)
T PRK06814 791 DPDDPAVILFTSGSE-GTPKGVVLSHRNL 818 (1140)
T ss_pred CCCCcEEEEECCCcc-CCCcEEEecHHHH
Confidence 344566899999999 8999999999875
No 117
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=39.29 E-value=44 Score=34.76 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=21.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.+.+.+...||||| |.+|-+..|....
T Consensus 151 ~~~~a~i~~TSGtT-G~PK~v~~s~~~~ 177 (509)
T PRK12406 151 VPQPQSMIYTSGTT-GHPKGVRRAAPTP 177 (509)
T ss_pred CCCceEEEECCCCC-CCCceEEEechhH
Confidence 34456899999999 8999998776543
No 118
>PRK08162 acyl-CoA synthetase; Validated
Probab=38.84 E-value=16 Score=38.39 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.2
Q ss_pred cceEecccCCCCCCcccCcCChHHH
Q 015052 92 ITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 92 i~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+...||||| |++|-+.+|.+.+
T Consensus 184 ~~~i~~TSGTT-G~PKgv~~t~~~~ 207 (545)
T PRK08162 184 AIALNYTSGTT-GNPKGVVYHHRGA 207 (545)
T ss_pred eEEEEeCCCCC-CCCcEEEEecHHH
Confidence 34788999999 8999999998753
No 119
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=38.26 E-value=26 Score=37.37 Aligned_cols=85 Identities=21% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCChhh--hhcCCCCCCChhhhhhcCCCc---ccCcc-----hHHHHHHHcCCCCCcccCcccceEecc
Q 015052 29 RETLRKILEENASAEYL--QNLGLNGRTDPESFKSCVPLV---THEDL-----QPYIQRIIDGDISPILTGKPITTISRS 98 (414)
Q Consensus 29 ~~~L~~iL~~~~~T~yG--k~~~f~~i~s~e~Fr~~VPl~---~Yed~-----~pyIeR~~~Ge~~~ll~~~pi~~f~~T 98 (414)
-++|.+|.-.-.+.+-| |.+.|.+.+++--+-+.+|+- .|+|+ .+.++.++.=+ .-+.+.+++ -.+.|
T Consensus 165 ~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~-k~~~pdd~~-niQFT 242 (596)
T KOG1177|consen 165 YETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMS-KWLSPDDAV-NIQFT 242 (596)
T ss_pred HHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhh-hhcCCCCce-EEEec
Confidence 56777777544444444 445555555443233344543 23333 13333333333 244445554 78999
Q ss_pred cCCCCCCcccCcCChHHH
Q 015052 99 SGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 99 SGTT~g~~K~IP~T~~~l 116 (414)
|||| |.||.+-.|.-.+
T Consensus 243 SGTT-G~PKgatLsH~~~ 259 (596)
T KOG1177|consen 243 SGTT-GAPKGATLSHYNF 259 (596)
T ss_pred cCCC-CCCcceeeehhhh
Confidence 9999 8999998887654
No 120
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=38.07 E-value=39 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.6
Q ss_pred ccccccceeeeecCCCCCCcccceeeecCCceEEEeeecC
Q 015052 325 ADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQR 364 (414)
Q Consensus 325 ~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~ 364 (414)
-+|-=|-|.+||++.++. .+++.|+...++||+.+
T Consensus 7 i~~~LSng~vqv~FnD~t-----kivl~~~~~~v~yi~~~ 41 (68)
T PF00659_consen 7 IGYQLSNGTVQVNFNDHT-----KIVLSPDGRLVTYIDRD 41 (68)
T ss_dssp EEEEETTSEEEEEETTS------EEEEETTCCEEEEE-TT
T ss_pred EEEEEeCCCEEEEEeCCC-----EEEECCCCCEEEEECCC
Confidence 456678999999988766 48899999999999855
No 121
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=35.35 E-value=1.3e+02 Score=29.93 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=27.6
Q ss_pred CCCCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccceee
Q 015052 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWI 334 (414)
Q Consensus 292 WP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i 334 (414)
.++|+.| +.+|. .....+.+++.++++++. ..||+||+..
T Consensus 233 ~~~l~~v--~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~ 274 (408)
T TIGR01733 233 LASLRLV--ILGGEALTPALVDRWRARGPGARLI-NLYGPTETTV 274 (408)
T ss_pred ccCceEE--EEeCccCCHHHHHHHHHhCCCcEEE-ecccCCceEE
Confidence 5677743 33333 555667777778877887 8999999853
No 122
>PRK12316 peptide synthase; Provisional
Probab=35.28 E-value=28 Score=47.52 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.8
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+.+|.+.+..
T Consensus 653 ~~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 682 (5163)
T PRK12316 653 NPENLAYVIYTSGST-GKPKGAGNRHRALSN 682 (5163)
T ss_pred CCCCeEEEEECCCcC-CCCCEeeEcCHHHHH
Confidence 455566899999999 899999999987643
No 123
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=34.23 E-value=24 Score=38.18 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCCCceeEEEecCC--hHHHHHHHHhHhCCCCccccccccccee--eeecCCCCC-Cccccee
Q 015052 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGW--IGANVNPSL-PPELATF 349 (414)
Q Consensus 292 WP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~--igi~~~~~~-~~~~~~~ 349 (414)
.|.++.|. ++|+ ...-..++++.+|...+. .+||-||.. +++|.+... .++.++.
T Consensus 298 l~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~ 357 (537)
T KOG1176|consen 298 LSSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR 357 (537)
T ss_pred CCccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc
Confidence 45665333 4555 666778888888865665 999999984 677877663 3555554
No 124
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.41 E-value=41 Score=34.86 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=19.9
Q ss_pred ccceEecccCCCCCCcccCcCChHHH
Q 015052 91 PITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 91 pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.+.+...||||| |++|-+..+...+
T Consensus 141 ~~a~i~~TSGtT-G~PK~v~~~~~~~ 165 (502)
T PRK08276 141 AGADMLYSSGTT-GRPKGIKRPLPGL 165 (502)
T ss_pred cceEEEECCCCC-CCCceEEEccCCc
Confidence 346889999999 8999998776543
No 125
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=31.06 E-value=54 Score=33.59 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=18.2
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+.....||||| |.+-.|...+..+
T Consensus 89 e~~~~~~tSSGTt-G~~S~i~~D~~t~ 114 (365)
T PF04443_consen 89 EEVEKVFTSSGTT-GQPSRIFRDRETA 114 (365)
T ss_pred hhheeEEECCCCC-CCCcEEEECHHHH
Confidence 4567789999999 6655566655544
No 126
>PRK13390 acyl-CoA synthetase; Provisional
Probab=29.79 E-value=26 Score=36.37 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=16.1
Q ss_pred ceEecccCCCCCCcccCcCC
Q 015052 93 TTISRSSGTTQGKPKFLPFN 112 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T 112 (414)
.+...||||| |.+|-+-.+
T Consensus 151 a~i~~TSGTT-G~PKgV~~~ 169 (501)
T PRK13390 151 AVMLYSSGTT-GFPKGIQPD 169 (501)
T ss_pred EEEEeCCCCC-CCCCEEEee
Confidence 5778999999 899998753
No 127
>PRK09088 acyl-CoA synthetase; Validated
Probab=29.18 E-value=1.9e+02 Score=29.63 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=20.9
Q ss_pred CCCCceeEEEecCCh---HHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~~---~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.++++ .+.+|+. .....++.+ .+++++ ..||+||+.
T Consensus 251 ~~~l~---~~~~gG~~~~~~~~~~~~~--~g~~v~-~~YG~TE~~ 289 (488)
T PRK09088 251 LRHLT---ALFTGGAPHAAEDILGWLD--DGIPMV-DGFGMSEAG 289 (488)
T ss_pred cccce---EEEecCCCCCHHHHHHHHH--hCCcee-eeecccccc
Confidence 35666 5555552 223333322 257887 799999984
No 128
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=28.16 E-value=1.7e+02 Score=30.75 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=22.5
Q ss_pred CCCCceeEEEecCC--hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.|+++. ++.+|. ...-++++++.++ .+++ ..||+||+.
T Consensus 309 ~~~l~~--~~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~ 348 (538)
T TIGR03208 309 VPSLFT--FLCAGAPIPGILVERAWELLG-ALIV-SAWGMTENG 348 (538)
T ss_pred CCcceE--EEEcCCCCCHHHHHHHHHHcC-CeEE-eeeccCcCC
Confidence 467773 233333 3333445555554 5776 999999973
No 129
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=27.64 E-value=2.5e+02 Score=29.47 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.++++ ++..|+ ...-.+.+++.++ ++++ ..||.||+.
T Consensus 311 ~~~l~---~i~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~TE~~ 350 (541)
T TIGR03205 311 LSSLA---TIGSGGAPLPVEVANFFERKTG-LKLK-SGWGMTETC 350 (541)
T ss_pred ccccc---eEEEccccCCHHHHHHHHHHhC-CCee-cccccccCC
Confidence 34566 444444 2333455555554 6877 999999985
No 130
>PRK07788 acyl-CoA synthetase; Validated
Probab=25.51 E-value=1.8e+02 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.++|+ .+..|+ ...-++++++.++. +++ ..||+||+.
T Consensus 322 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~~-~l~-~~YG~TE~~ 361 (549)
T PRK07788 322 TSSLK---IIFVSGSALSPELATRALEAFGP-VLY-NLYGSTEVA 361 (549)
T ss_pred CCcee---EEEEeCCCCCHHHHHHHHHHhCc-cce-eccCcchhc
Confidence 46676 444444 44455666666654 666 899999964
No 131
>PRK05691 peptide synthase; Validated
Probab=24.89 E-value=56 Score=44.14 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++-+.+...||||| |++|-+.++++.+..
T Consensus 1272 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 1300 (4334)
T PRK05691 1272 GDNLAYVIYTSGST-GQPKGVGNTHAALAE 1300 (4334)
T ss_pred CCCeEEEEEcCCCC-CCCceeEeecHHHHH
Confidence 34456899999999 899999999987644
No 132
>PRK13391 acyl-CoA synthetase; Provisional
Probab=24.15 E-value=66 Score=33.48 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=14.9
Q ss_pred ceEecccCCCCCCcccCcC
Q 015052 93 TTISRSSGTTQGKPKFLPF 111 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~ 111 (414)
.+...||||| |.+|-+=.
T Consensus 157 a~il~TSGtT-G~PKgv~~ 174 (511)
T PRK13391 157 TDMLYSSGTT-GRPKGIKR 174 (511)
T ss_pred cEEEECCCCC-CCCCEEEE
Confidence 4678999999 89997753
No 133
>PRK06145 acyl-CoA synthetase; Validated
Probab=23.38 E-value=2.5e+02 Score=28.88 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=27.5
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCcccccccccceee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWI 334 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i 334 (414)
.++++ ++..|+ ....++.+++.+++++++ ..||+||+..
T Consensus 263 ~~~l~---~~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~ 304 (497)
T PRK06145 263 LDSLA---WCIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCS 304 (497)
T ss_pred cccce---EEEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCC
Confidence 36666 444444 445567777778888887 8999999964
No 134
>PRK06060 acyl-CoA synthetase; Validated
Probab=23.12 E-value=2.9e+02 Score=30.27 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=26.8
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.++|+ ++..|+ ...-++++.+.+++++++ ..||.||+.
T Consensus 259 ~~slr---~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~ 299 (705)
T PRK06060 259 FRSLR---CVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVG 299 (705)
T ss_pred cccee---EEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccC
Confidence 45676 445555 444556677778888887 899999984
No 135
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=23.06 E-value=1.2e+02 Score=32.09 Aligned_cols=39 Identities=23% Similarity=0.507 Sum_probs=27.1
Q ss_pred cCCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
..++|+ ++..|+ ...-++++++.+++++++ ..||+||+.
T Consensus 286 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 327 (563)
T PLN02860 286 VFPSVR---KILNGGGSLSSRLLPDAKKLFPNAKLF-SAYGMTEAC 327 (563)
T ss_pred ccccee---EEEeCCCcCCHHHHHHHHHhcCCCcee-cCCCccccC
Confidence 345666 555555 344456677778888888 899999974
No 136
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=22.92 E-value=4.8e+02 Score=27.37 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=25.7
Q ss_pred cCCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
-.|+|+ ++.+|+ .....+.+++.+ +++++ ..||+||+.
T Consensus 310 ~~~~l~---~~~~~G~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~ 350 (547)
T PRK13295 310 PVSSLR---TFLCAGAPIPGALVERARAAL-GAKIV-SAWGMTENG 350 (547)
T ss_pred Ccccce---EEEEecCCCCHHHHHHHHHHh-CCCeE-EeccCCCCC
Confidence 356777 344443 555566677666 57888 899999974
No 137
>PRK09274 peptide synthase; Provisional
Probab=22.79 E-value=1.5e+02 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.444 Sum_probs=26.8
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhC-CCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAG-DLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~-~vpi~~~~Y~ASEg~ 333 (414)
.|+|+ .+.+|+ ....++++++.++ +++++ ..||+||+.
T Consensus 287 ~~~lr---~~~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 328 (552)
T PRK09274 287 LPSLR---RVISAGAPVPIAVIERFRAMLPPDAEIL-TPYGATEAL 328 (552)
T ss_pred Cchhh---EEEecCCcCCHHHHHHHHHHcCCCceEE-ccccccccc
Confidence 46777 444444 4566677887776 47887 999999985
No 138
>PRK07638 acyl-CoA synthetase; Validated
Probab=22.37 E-value=3e+02 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=24.9
Q ss_pred EEecCC--hHHHHHHHHhHhCCCCcccccccccceee
Q 015052 300 GIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWI 334 (414)
Q Consensus 300 ~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i 334 (414)
.+.+|+ ...-..++++.+++++++ ..||+||+..
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~ 293 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSF 293 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCc
Confidence 455565 444556777778888887 7999999953
No 139
>PRK06839 acyl-CoA synthetase; Validated
Probab=22.26 E-value=2.6e+02 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.+.++ .+..|+ .....+.+++. ++++. ..||+||+.
T Consensus 263 ~~~lr---~~~~gG~~~~~~~~~~~~~~--g~~~~-~~YG~tE~~ 301 (496)
T PRK06839 263 LQSVR---WFYNGGAPCPEELMREFIDR--GFLFG-QGFGMTETS 301 (496)
T ss_pred Ccccc---eEEECCCCCCHHHHHHHHHh--CCeeE-eeccCCCCC
Confidence 45566 334444 44555666654 57776 889999985
No 140
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=22.24 E-value=2.8e+02 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=21.6
Q ss_pred EEecCC---hHHHHHHHHhHhCCCCcccccccccceeee
Q 015052 300 GIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIG 335 (414)
Q Consensus 300 ~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ig 335 (414)
++..|+ ...-++++++.+ +++++ ..||+||+...
T Consensus 331 ~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~ 367 (557)
T PRK07059 331 VANGGGMAVQRPVAERWLEMT-GCPIT-EGYGLSETSPV 367 (557)
T ss_pred EEEeccccCCHHHHHHHHHHh-CCCee-eccccccccch
Confidence 444554 334445566655 46877 89999998543
No 141
>PRK05691 peptide synthase; Validated
Probab=21.96 E-value=74 Score=43.04 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=25.7
Q ss_pred ccCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 87 LTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 87 l~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
..++.+.+...||||| |++|-+-++++.+-.
T Consensus 3866 ~~~~~~ayvi~TSGST-G~PKGV~~~h~~~~~ 3896 (4334)
T PRK05691 3866 SGPDNLAYVIYTSGST-GLPKGVMVEQRGMLN 3896 (4334)
T ss_pred CCCCceEEEEECCCCC-CCCCEEEeehHHHHH
Confidence 3456677999999999 899999999987644
No 142
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.85 E-value=3.6e+02 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 292 WP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.+.++ ++..|+ ...-.+++++.+ +++++ ..||+||+.
T Consensus 325 ~~~lr---~v~~gG~~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~ 364 (562)
T PRK05677 325 FSALK---LTLSGGMALQLATAERWKEVT-GCAIC-EGYGMTETS 364 (562)
T ss_pred hhhce---EEEEcCccCCHHHHHHHHHHc-CCCee-ccCCccccC
Confidence 45666 444454 333445556555 46877 999999984
No 143
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.63 E-value=3.1e+02 Score=28.80 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=24.2
Q ss_pred EEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 300 GIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 300 ~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
++..|+ ....++.+++.+++.+++ ..||+||+.
T Consensus 294 ~i~~gg~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~ 329 (542)
T PRK07786 294 VLSWGAAPASDTLLRQMAATFPEAQIL-AAFGQTEMS 329 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccc
Confidence 444444 445667788888888887 889999984
No 144
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.56 E-value=1.9e+02 Score=23.91 Aligned_cols=51 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCcHHHHHHHhccC--CCCHHHHHHHHHHhcCCCCC
Q 015052 232 ELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (414)
Q Consensus 232 ~~~w~el~~dI~~Gt~~~~i~~~~~R~~l~~~l--~~~p~rA~~L~~~~~k~~g~ 284 (414)
+++=.++++.+....-.. .+..+|+..+.++- .|.|+-.+++++.+... ||
T Consensus 38 d~ev~~Va~~L~~~~~~~-~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~-GW 90 (96)
T PF11829_consen 38 DDEVAEVAAELAARGDPP-VDRIDIGVAITRVTDELPTPEDIERVRARLAAA-GW 90 (96)
T ss_dssp HHHHHHHHHHHHHHTSS--BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTT-T-
T ss_pred HHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhC-CC
Confidence 445566666664432221 25567888888877 57888888888877764 76
No 145
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.35 E-value=73 Score=30.45 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=32.4
Q ss_pred CcccCcccceEecccCCCCCCcccCcCC-hHH-HHHHHHHHHHHHHHHhccCC
Q 015052 85 PILTGKPITTISRSSGTTQGKPKFLPFN-DEL-METTLQIFRTSYAFRNREFP 135 (414)
Q Consensus 85 ~ll~~~pi~~f~~TSGTT~g~~K~IP~T-~~~-l~~~~~~~~~~~~~~~~~~p 135 (414)
.+|..--+..|.+|||.+ |=+=++|.. .+. .++.......+...+.+..|
T Consensus 120 ~~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~~r~fa~~iA~~l~~~~P 171 (223)
T cd04866 120 EILDALGLTSFVKTSGNK-GLQVYIPLPDNKFTYDETRLFTEFIAEYLCQQFP 171 (223)
T ss_pred HHHHHcCCccceEccCCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 344444467899999998 899999999 442 23333333344555666666
Done!