Query 015052
Match_columns 414
No_of_seqs 122 out of 547
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 1E-103 3E-108 831.8 33.5 400 1-407 7-410 (581)
2 4eql_A 4-substituted benzoates 100.0 5E-100 2E-104 804.9 31.9 395 1-407 7-403 (581)
3 4b2g_A GH3-1 auxin conjugating 100.0 7E-100 2E-104 805.6 31.2 403 2-407 11-415 (609)
4 2y27_A Phenylacetate-coenzyme 98.9 5.3E-08 1.8E-12 98.6 17.1 90 22-118 21-117 (437)
5 2y4o_A Phenylacetate-coenzyme 98.8 7.2E-08 2.5E-12 97.8 17.4 89 23-118 24-119 (443)
6 3qov_A Phenylacetate-coenzyme 98.8 2.9E-07 9.9E-12 93.1 19.0 88 22-118 17-113 (436)
7 3hgu_A EHPF; phenazine, antibi 98.1 5.3E-05 1.8E-09 74.7 15.9 84 27-117 22-117 (369)
8 3ivr_A Putative long-chain-fat 95.1 0.04 1.4E-06 56.3 7.8 83 292-398 271-355 (509)
9 3fce_A D-alanine--poly(phospho 94.8 0.066 2.2E-06 54.7 8.5 42 290-334 258-301 (512)
10 3etc_A AMP-binding protein; ad 94.8 0.2 6.9E-06 52.3 12.4 28 88-116 223-250 (580)
11 2d1s_A Luciferase, luciferin 4 94.5 0.98 3.3E-05 46.5 16.5 27 90-117 192-218 (548)
12 3e7w_A D-alanine--poly(phospho 94.0 0.043 1.5E-06 56.1 4.9 42 289-333 256-299 (511)
13 4gs5_A Acyl-COA synthetase (AM 80.8 0.62 2.1E-05 45.4 2.1 25 93-118 40-64 (358)
14 3l8c_A D-alanine--poly(phospho 76.9 1 3.5E-05 45.8 2.4 29 88-117 143-171 (521)
15 3t5a_A Long-chain-fatty-acid-- 75.8 1.5 5.1E-05 43.7 3.2 29 89-118 182-210 (480)
16 3ipl_A 2-succinylbenzoate--COA 75.5 1.6 5.4E-05 44.1 3.3 29 88-117 161-189 (501)
17 3r44_A Fatty acyl COA syntheta 75.5 1.3 4.3E-05 45.2 2.6 30 88-118 168-197 (517)
18 3kxw_A Saframycin MX1 syntheta 75.3 1.5 5E-05 45.2 3.1 30 88-118 165-194 (590)
19 3o83_A Peptide arylation enzym 74.4 1.5 5.1E-05 45.0 2.8 30 88-118 189-218 (544)
20 1mdb_A 2,3-dihydroxybenzoate-A 74.2 1.9 6.5E-05 44.1 3.6 29 89-118 181-209 (539)
21 3gqw_A Fatty acid AMP ligase; 74.1 1.7 5.9E-05 44.4 3.2 28 89-117 175-202 (576)
22 3nyq_A Malonyl-COA ligase; A/B 74.0 1.7 5.9E-05 44.1 3.2 29 89-118 154-182 (505)
23 4fuq_A Malonyl COA synthetase; 73.4 1.6 5.5E-05 44.3 2.8 29 89-118 154-182 (503)
24 3rg2_A Enterobactin synthase c 73.0 2 7E-05 44.8 3.5 30 88-118 182-211 (617)
25 1t5h_X 4-chlorobenzoyl COA lig 72.3 1.5 5.2E-05 44.3 2.3 29 89-118 152-180 (504)
26 3ite_A SIDN siderophore synthe 70.1 2.3 7.8E-05 43.7 3.0 30 89-119 174-203 (562)
27 3g7s_A Long-chain-fatty-acid-- 69.4 1.9 6.6E-05 44.2 2.3 28 90-118 180-207 (549)
28 4gr5_A Non-ribosomal peptide s 67.4 2 7E-05 44.2 2.0 28 88-116 212-239 (570)
29 3ni2_A 4-coumarate:COA ligase; 66.7 2 6.7E-05 43.9 1.7 29 88-117 176-204 (536)
30 2v7b_A Benzoate-coenzyme A lig 65.9 1.7 6E-05 44.1 1.1 28 88-116 181-208 (529)
31 1v25_A Long-chain-fatty-acid-C 65.6 2.6 9E-05 43.1 2.4 28 88-116 174-201 (541)
32 3rix_A Luciferase, luciferin 4 65.5 2.3 7.9E-05 43.6 2.0 26 90-116 190-215 (550)
33 4dg8_A PA1221; ANL superfamily 64.8 2.4 8.1E-05 44.6 1.9 27 89-116 163-189 (620)
34 1amu_A GRSA, gramicidin synthe 64.3 2.3 8E-05 43.9 1.7 28 89-117 181-208 (563)
35 3c5e_A Acyl-coenzyme A synthet 59.4 3.2 0.00011 42.9 1.7 28 88-116 204-231 (570)
36 1pg4_A Acetyl-COA synthetase; 58.1 2.6 9E-05 44.4 0.7 27 89-116 255-281 (652)
37 1ry2_A Acetyl-coenzyme A synth 58.0 3.2 0.00011 43.9 1.4 27 89-116 261-287 (663)
38 3tsy_A Fusion protein 4-coumar 55.6 4.9 0.00017 44.4 2.4 29 88-117 223-251 (979)
39 3rix_A Luciferase, luciferin 4 48.8 58 0.002 32.9 9.2 86 291-398 305-395 (550)
40 2vsq_A Surfactin synthetase su 46.2 7.1 0.00024 44.7 1.9 28 88-116 605-632 (1304)
41 3ni2_A 4-coumarate:COA ligase; 43.3 53 0.0018 33.1 7.8 40 290-333 294-336 (536)
42 1y29_A Huwentoxin-X; A double- 37.0 11 0.00037 22.8 0.8 13 401-413 9-21 (28)
43 2v7b_A Benzoate-coenzyme A lig 36.0 1.3E+02 0.0043 30.1 9.2 82 294-398 301-386 (529)
44 3c5e_A Acyl-coenzyme A synthet 35.0 1.3E+02 0.0043 30.6 9.2 40 292-335 321-362 (570)
45 1t5h_X 4-chlorobenzoyl COA lig 34.5 2.1E+02 0.0073 28.2 10.6 61 267-337 251-314 (504)
46 2m0n_A Putative uncharacterize 29.3 56 0.0019 26.6 4.1 52 232-284 43-100 (112)
47 1mdb_A 2,3-dihydroxybenzoate-A 29.3 49 0.0017 33.4 4.8 42 292-337 297-340 (539)
48 3l8c_A D-alanine--poly(phospho 28.6 1.2E+02 0.004 30.2 7.4 42 290-334 261-304 (521)
49 4fuq_A Malonyl COA synthetase; 28.0 3E+02 0.01 27.1 10.5 41 290-335 265-308 (503)
50 3ol3_A Putative uncharacterize 27.1 54 0.0018 26.6 3.6 52 232-284 46-100 (107)
51 2kvc_A Putative uncharacterize 21.8 90 0.0031 25.1 3.9 49 232-284 41-91 (103)
52 2lky_A Uncharacterized protein 21.0 69 0.0023 26.1 3.1 49 232-284 43-93 (112)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=9.6e-104 Score=831.85 Aligned_cols=400 Identities=66% Similarity=1.095 Sum_probs=369.5
Q ss_pred CCccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCC-CChh-hhhhcCCCcccCcchHHHHHH
Q 015052 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI 78 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i-~s~e-~Fr~~VPl~~Yed~~pyIeR~ 78 (414)
|+|||+..+.++.++.|++.++||.++|+++|++||++|++|+|||+|||++| +|++ +||++|||++|||++|||||+
T Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi 86 (581)
T 4epl_A 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM 86 (581)
T ss_dssp ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 9999 999999999999999999999
Q ss_pred HcCCCCCcccCcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CC-CCceEEEeccCCcccCCCC
Q 015052 79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKGG 156 (414)
Q Consensus 79 ~~Ge~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~t~~G 156 (414)
++||.++|||++||.+|++|||||+|++|+||+|+++++.++++..++..++++ +| ++ .||+|+|++++++.+|++|
T Consensus 87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~G 165 (581)
T 4epl_A 87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGG 165 (581)
T ss_dssp HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTS
T ss_pred HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCC
Confidence 999978999999999999999999999999999999999987788888888876 55 88 8999998889999999999
Q ss_pred CeeeccccccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHH
Q 015052 157 LNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWE 236 (414)
Q Consensus 157 ip~G~~S~~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~ 236 (414)
+|+|++|++.+++..|+.+|.|+...+++|.+++.++|..+++||||||||+++++|.+|+++||++|+++++.|+++|+
T Consensus 166 i~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We 245 (581)
T 4epl_A 166 VPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWE 245 (581)
T ss_dssp CEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhH
Q 015052 237 ELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHY 316 (414)
Q Consensus 237 el~~dI~~Gt~~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~ 316 (414)
+||+||++|+++++++++++|++|+++|+|||++|++|+++|++.++|+|++++|||||++|+||++|+|++|+++|++|
T Consensus 246 ~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~ 325 (581)
T 4epl_A 246 EIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHY 325 (581)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHH
T ss_pred HHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987224999999999999999999999999999999999
Q ss_pred hCCCCcccccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEe
Q 015052 317 AGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVT 396 (414)
Q Consensus 317 ~~~vpi~~~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViT 396 (414)
+|++|+++++|+||||+||||+++.++++.++|+|+|+.+||||||++ +.++ +++++|+++|||+|++||||||
T Consensus 326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviT 399 (581)
T 4epl_A 326 AGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVIT 399 (581)
T ss_dssp HTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEE
T ss_pred cCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEe
Confidence 999999999999999999999999998888899999999999999998 6653 6789999999999999999999
Q ss_pred cCcchhhhccC
Q 015052 397 NVAVAGSLFSR 407 (414)
Q Consensus 397 t~~GLyRY~~~ 407 (414)
|.+|||||++.
T Consensus 400 t~~GL~RYr~G 410 (581)
T 4epl_A 400 NYAGLYRYRLG 410 (581)
T ss_dssp STTSCSSEEEE
T ss_pred eccceeeEEcC
Confidence 99999999863
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=5.1e-100 Score=804.94 Aligned_cols=395 Identities=36% Similarity=0.640 Sum_probs=370.5
Q ss_pred CCccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHc
Q 015052 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIID 80 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~ 80 (414)
|+|++. ++++.++.|++.++||.++|+++|++||++|++|+|||+| |++|+|+++||++|||++|||++|||||+++
T Consensus 7 ~~~~~~--~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~ 83 (581)
T 4eql_A 7 MKPIFD--INETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVN 83 (581)
T ss_dssp ---------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHT
T ss_pred cccccC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHc
Confidence 555543 3357789999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCcccCcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCee
Q 015052 81 GDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNA 159 (414)
Q Consensus 81 Ge~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~ 159 (414)
||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++++| ++.||+|++++.+...+|++|+|+
T Consensus 84 Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~ 163 (581)
T 4eql_A 84 GESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPA 163 (581)
T ss_dssp TCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEE
T ss_pred CCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeee
Confidence 9966999999999999999999999999999999999988889999999999999 888999998888888899999999
Q ss_pred eccccccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHH
Q 015052 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELC 239 (414)
Q Consensus 160 G~~S~~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~ 239 (414)
|++|++++++.+|+.+|..+...|++|.+++.++|..+++||||||||+++++|+.|+++|+++|+++++.|+++|++||
T Consensus 164 g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~ 243 (581)
T 4eql_A 164 RVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELC 243 (581)
T ss_dssp ECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888555788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCcHHHHHHHhccCC-CCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhC
Q 015052 240 DDIREGVLSSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (414)
Q Consensus 240 ~dI~~Gt~~~~i~~~~~R~~l~~~l~-~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~ 318 (414)
+||++|+++++++++++|.++...|+ |||+||++|+++|++. +|.|++++|||||++|+||+||+|++|+++|++|+|
T Consensus 244 ~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~-~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g 322 (581)
T 4eql_A 244 SNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQN-SWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCN 322 (581)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSS-CCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHT
T ss_pred HHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCC-CccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcC
Confidence 99999999999999999999999997 9999999999999985 699999999999999999999999999999999999
Q ss_pred CCCcccccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEecC
Q 015052 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (414)
Q Consensus 319 ~vpi~~~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViTt~ 398 (414)
++|+++++|+||||+||||+++.++++..+|+|+|+.+||||||++ +. ++|++++++|||+|++|||||||.
T Consensus 323 ~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~--~~------~~~~~v~l~eVe~G~~YelViTt~ 394 (581)
T 4eql_A 323 DLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD--GG------DKNDVVDLEDVKLGCTYEPVVTNF 394 (581)
T ss_dssp TCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECS--TT------CCSSCEEGGGCCTTCEEEEEEECS
T ss_pred CCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecc--cc------CCCcEeCHHHcCCCceEEEEEeec
Confidence 9999999999999999999999998887889999999999999998 54 358999999999999999999999
Q ss_pred cchhhhccC
Q 015052 399 AVAGSLFSR 407 (414)
Q Consensus 399 ~GLyRY~~~ 407 (414)
+|||||++.
T Consensus 395 ~GL~RYr~G 403 (581)
T 4eql_A 395 AGLYRMRVG 403 (581)
T ss_dssp SSCCSEECC
T ss_pred cceeeEEcC
Confidence 999999874
No 3
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=6.5e-100 Score=805.61 Aligned_cols=403 Identities=37% Similarity=0.638 Sum_probs=377.2
Q ss_pred CccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHcC
Q 015052 2 LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDG 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~G 81 (414)
++++...++++.++.|++.++||.++|+++|++||++|++|+|||+|||++|+|++|||++|||++|||++|||||+++|
T Consensus 11 ~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~~G 90 (609)
T 4b2g_A 11 LGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANG 90 (609)
T ss_dssp -----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHHTT
T ss_pred hhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHhcC
Confidence 35566677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCeee
Q 015052 82 DISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAG 160 (414)
Q Consensus 82 e~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~G 160 (414)
|.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++++| ++.||+|++++++.+.+|++|+|+|
T Consensus 91 e~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g 170 (609)
T 4b2g_A 91 DRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLAR 170 (609)
T ss_dssp CCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEE
T ss_pred CCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccc
Confidence 966999999999999999999999999999999999988889999999999999 7889999988888889999999999
Q ss_pred ccccccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHHH
Q 015052 161 TATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD 240 (414)
Q Consensus 161 ~~S~~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~~ 240 (414)
++|++++++..|+.+|..+...|++|.+++.++|..+++||||||||+++++|+.|+++|+++++++++.|+++|++||+
T Consensus 171 ~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~ 250 (609)
T 4b2g_A 171 PVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTH 250 (609)
T ss_dssp CHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988885557789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhCCC
Q 015052 241 DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDL 320 (414)
Q Consensus 241 dI~~Gt~~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~v 320 (414)
||++|+++++++++++|.+|+++|+|||++|++|+++|++. +|.|++++|||||++|+||++|+|++|+++|++|+|++
T Consensus 251 dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~-~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~ 329 (609)
T 4b2g_A 251 DIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKD-NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGL 329 (609)
T ss_dssp HHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSS-CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSC
T ss_pred HHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCC-ccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999985 69999999999999999999999999999999999999
Q ss_pred CcccccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCcccc-ccCCCCceeccCCcccCCeEEEEEecCc
Q 015052 321 PLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQ-VLCIEPKPVGLTEVKVGEEYEIIVTNVA 399 (414)
Q Consensus 321 pi~~~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~-~~~~~~~tl~l~ele~G~~YelViTt~~ 399 (414)
|+++++|+||||+||+|+++.++++..+|+|+|+.+||||||++ +.+.. ...++|++|+++|||+|++|||||||++
T Consensus 330 p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~--~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~ 407 (609)
T 4b2g_A 330 PLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHE--HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA 407 (609)
T ss_dssp CEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGG--GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT
T ss_pred ccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEecc--ccccccccCCCCccccHhHcCCCCeEEEehhhhh
Confidence 99999999999999999999998888899999999999999998 64100 0137799999999999999999999999
Q ss_pred chhhhccC
Q 015052 400 VAGSLFSR 407 (414)
Q Consensus 400 GLyRY~~~ 407 (414)
|||||+..
T Consensus 408 GL~RYr~G 415 (609)
T 4b2g_A 408 GLYRYRVG 415 (609)
T ss_dssp SCCSEEEE
T ss_pred hhhheecC
Confidence 99999864
No 4
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=98.86 E-value=5.3e-08 Score=98.62 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=65.2
Q ss_pred hcHHHHHHHHHHHHHHHc-CCChhhhhc----CC--CCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCcccCcccce
Q 015052 22 KDAERIQRETLRKILEEN-ASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITT 94 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~~-~~T~yGk~~----~f--~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~~~pi~~ 94 (414)
+..++.|.+-|+++|+.+ +++.|.+++ ++ .++.+.++|+ ++|+++++++..... .+ ..-..++.+.+
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~--~~~~~~~~~~~ 94 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FG--MFAVPQDRISR 94 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TT--TCSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cc--cccCChhHeEE
Confidence 345678889999999865 567777665 33 3578899998 699999988753210 01 11224455678
Q ss_pred EecccCCCCCCcccCcCChHHHHH
Q 015052 95 ISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 95 f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
...||||| |++|-+++|++.+..
T Consensus 95 i~~TSGTT-G~PK~v~~t~~~~~~ 117 (437)
T 2y27_A 95 IHASSGTT-GKPTVVGYTAADIDT 117 (437)
T ss_dssp EEECCCTT-SSCCEEEECHHHHHH
T ss_pred EEECCCCC-CCceEEecCHHHHHH
Confidence 89999999 899999999988654
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=98.84 E-value=7.2e-08 Score=97.82 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHc-CCChhhhhc----CC--CCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCcccCcccceE
Q 015052 23 DAERIQRETLRKILEEN-ASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 95 (414)
Q Consensus 23 ~~~~~Q~~~L~~iL~~~-~~T~yGk~~----~f--~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~~~pi~~f 95 (414)
+.++.|.+.|+++|+.+ +++.|.+++ |+ .+|.+.+||+ ++|+++++++..... .+ ..-..++.+.+.
T Consensus 24 ~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~--~~~~~~~~~~~i 97 (443)
T 2y4o_A 24 ELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FG--LFAVPREQVVRV 97 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TT--TCSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Cc--ccCCChhheEEE
Confidence 45678889999999865 667777765 33 4588999998 799999988853210 01 112245556788
Q ss_pred ecccCCCCCCcccCcCChHHHHH
Q 015052 96 SRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 96 ~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
..||||| |++|-+++|++.+..
T Consensus 98 ~~TSGTT-G~PK~v~~t~~~~~~ 119 (443)
T 2y4o_A 98 HASSGTT-GKPTVVGYTARDIDT 119 (443)
T ss_dssp EEECCSS-SSCEEEEECHHHHHH
T ss_pred EECCCCC-CCceEEecCHHHHHH
Confidence 9999999 899999999988654
No 6
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=98.77 E-value=2.9e-07 Score=93.15 Aligned_cols=88 Identities=19% Similarity=0.386 Sum_probs=66.6
Q ss_pred hcHHHHHHHHHHHHHHHcCCChhhhhc----CCC--CCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCccc--C-ccc
Q 015052 22 KDAERIQRETLRKILEENASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT--G-KPI 92 (414)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~~~~T~yGk~~----~f~--~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~--~-~pi 92 (414)
+..++.|.+.|+++++...++.|.|++ |+. +|.+.++++ ++|+.+.+++.... . ....+ + +.+
T Consensus 17 ~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~------p-~~~~~~~~~~~~ 88 (436)
T 3qov_A 17 EKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANY------P-FGLVAGDMKRDG 88 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTT------T-TTTCCSCHHHHE
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcC------C-CccccCCCcCCe
Confidence 345788999999999888888988864 554 688899997 59999998886421 1 12222 2 345
Q ss_pred ceEecccCCCCCCcccCcCChHHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+...||||| |++|-+++|++.+..
T Consensus 89 a~i~~TSGTT-G~PK~v~~th~~~~~ 113 (436)
T 3qov_A 89 VRIHSSSGTT-GNPTVIVHSQHDLDS 113 (436)
T ss_dssp EEEEECSCSS-SCCCEEEEEHHHHHH
T ss_pred EEEEECCCcC-CCCeEEEECHHHHHH
Confidence 6889999999 899999999987644
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.12 E-value=5.3e-05 Score=74.69 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcC----CChhhhhc----CC---CCCCChhhhhhcCCCcccCcchH-HHHHHHcCCCCCcccCcccce
Q 015052 27 IQRETLRKILEENA----SAEYLQNL----GL---NGRTDPESFKSCVPLVTHEDLQP-YIQRIIDGDISPILTGKPITT 94 (414)
Q Consensus 27 ~Q~~~L~~iL~~~~----~T~yGk~~----~f---~~i~s~e~Fr~~VPl~~Yed~~p-yIeR~~~Ge~~~ll~~~pi~~ 94 (414)
.+++.|+++++.+. ++.|-|++ |+ .+|++.+|++ ++|+++ ++++. +.+.+.. .. +.++.+.+
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a~ 95 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHPQ 95 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCCE
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccEE
Confidence 45667778887654 67777753 45 3578889996 499999 88854 2211110 01 25566678
Q ss_pred EecccCCCCCCcccCcCChHHHH
Q 015052 95 ISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 95 f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
...||||| |++|-+.+|++.+.
T Consensus 96 i~~TSGTT-G~PKgv~~t~~~~~ 117 (369)
T 3hgu_A 96 VYESGGTT-GAPKYVVAYDAWIE 117 (369)
T ss_dssp EEEECC----CCEEEEECHHHHH
T ss_pred EEECCCCC-CCCCEEEECHHHHH
Confidence 99999999 89999999998754
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=95.08 E-value=0.04 Score=56.26 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCCCceeEEEecCChHHHHHHHHhHhCCCCcccccccccceee--eecCCCCCCcccceeeecCCceEEEeeecCCCCcc
Q 015052 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWI--GANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLE 369 (414)
Q Consensus 292 WP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i--gi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~ 369 (414)
.+.|+ .+.+|+...-.+++++.+++++++ ..||.||+.. ..+..... +...+. ..|+.. .+.+ + +.
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~-~~~~G~-p~~~~~-~~i~--d--~~- 338 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDR-PKSAGR-PLFWRT-VAVV--D--AE- 338 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGS-TTSCCE-ECTTCE-EEEE--C--TT-
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccC-CCcccc-cCCCcE-EEEE--C--CC-
Confidence 34566 344455446667788888888887 8999999843 22211111 111222 334432 2333 2 11
Q ss_pred ccccCCCCceeccCCcccCCeEEEEEecC
Q 015052 370 SQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (414)
Q Consensus 370 ~~~~~~~~~tl~l~ele~G~~YelViTt~ 398 (414)
. .+|..|+.-||+|+..
T Consensus 339 -------~-----~~~~~g~~GEl~v~g~ 355 (509)
T 3ivr_A 339 -------D-----RPLPPGEVGEIVLRGP 355 (509)
T ss_dssp -------S-----CBCCTTCCEEEEEEST
T ss_pred -------C-----CCCCCCCceEEEEecC
Confidence 1 3567899999999863
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=94.84 E-value=0.066 Score=54.70 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=29.3
Q ss_pred ccCCCCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccceee
Q 015052 290 ELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWI 334 (414)
Q Consensus 290 ~lWP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i 334 (414)
...|+|+.| +.+|. ...-.+++++.+++++++ .+||+||+..
T Consensus 258 ~~~~~lr~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~ 301 (512)
T 3fce_A 258 SMLPNMKTF--LFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATV 301 (512)
T ss_dssp TTSTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSS
T ss_pred hhCccccEE--EEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhh
Confidence 346788833 33343 555667777888888888 8999999753
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=94.82 E-value=0.2 Score=52.29 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=22.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |++|-+..|...+
T Consensus 223 ~~~d~a~i~~TSGTT-G~PKgV~~~~~~~ 250 (580)
T 3etc_A 223 KNEDICLVYFSSGTA-GFPKMVEHDNTYP 250 (580)
T ss_dssp CTTSEEEEEEECCSS-SSCEEEEEETTHH
T ss_pred CCCCcEEEEEeCCCC-CCccEEEeccHHH
Confidence 344556889999999 8999999888754
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=94.47 E-value=0.98 Score=46.50 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.1
Q ss_pred cccceEecccCCCCCCcccCcCChHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
+.+.+...||||| |++|-+..|++.+.
T Consensus 192 ~d~a~i~~TSGTT-G~PKgv~~sh~~~~ 218 (548)
T 2d1s_A 192 EQVALIMNSSGST-GLPKGVQLTHENIV 218 (548)
T ss_dssp TCEEEEECCSSCS-SSCCCEEEEHHHHH
T ss_pred CCEEEEEeCCCCC-CCCCEEEecHHHHH
Confidence 4566889999999 89999999998753
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=93.96 E-value=0.043 Score=56.11 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=29.6
Q ss_pred cccCCCCceeEEEecCC--hHHHHHHHHhHhCCCCccccccccccee
Q 015052 289 PELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 289 ~~lWP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
....+.++. ++.+|. ...-.+++++.+++++++ .+||.||+.
T Consensus 256 ~~~~~~l~~--~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 299 (511)
T 3e7w_A 256 QDLLPHADT--FMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEAT 299 (511)
T ss_dssp TTTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGS
T ss_pred cccCCcccE--EEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchhe
Confidence 345677773 233343 556667788888888888 899999974
No 13
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=80.80 E-value=0.62 Score=45.44 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.2
Q ss_pred ceEecccCCCCCCcccCcCChHHHHH
Q 015052 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 93 ~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.+...||||| |++|-+..|++.+..
T Consensus 40 a~Il~TSGTT-G~PKgV~~th~~l~~ 64 (358)
T 4gs5_A 40 EFVLHTSGST-GMPKPITVTRAQLAA 64 (358)
T ss_dssp EEEEEEECTT-SSEEEEEEEHHHHHH
T ss_pred EEEEECCccc-ccCcEEEEeHHHHHH
Confidence 4678899999 899999999987643
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=76.90 E-value=1 Score=45.77 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=21.4
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++.+.+...||||| |++|-+..|.+.+.
T Consensus 143 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 171 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTT-GQPKGVQISHDNLL 171 (521)
T ss_dssp CTTSEEEEEECCC----CCCEEEEEHHHHH
T ss_pred CCCCcEEEEEcCCCC-CCCCEEEEehHHHH
Confidence 445567899999999 89999999998764
No 15
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=75.78 E-value=1.5 Score=43.74 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=18.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+..|.+.+..
T Consensus 182 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 182 YPSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp CCSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CCceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 34456899999999 899999999987643
No 16
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=75.51 E-value=1.6 Score=44.08 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=24.0
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++.+.+...||||| |++|-+..|.+.+.
T Consensus 161 ~~~d~a~i~~TSGTT-G~PKgv~~th~~~~ 189 (501)
T 3ipl_A 161 NLDDIASIMFTSGTT-GPQKAVPQTFRNHY 189 (501)
T ss_dssp CTTSEEEEEECCTTT-SCCCEEEEEHHHHH
T ss_pred CCCCeEEEEECCCCC-CCCcEEEEeHHHHH
Confidence 345567899999999 89999999988753
No 17
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=75.48 E-value=1.3 Score=45.25 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=21.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+.+|.+.+..
T Consensus 168 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 197 (517)
T 3r44_A 168 GGDDNLFIMYTSGTT-GHPKGVVHTHESVHS 197 (517)
T ss_dssp CTTSEEEEEEECC----CCEEEEEEHHHHHH
T ss_pred CCCCeEEEEECCccc-ccCceeeeeHHHHHH
Confidence 345556899999999 899999999987643
No 18
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=75.28 E-value=1.5 Score=45.21 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+..|.+.+..
T Consensus 165 ~~~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 194 (590)
T 3kxw_A 165 KSNDIAFLQYTSGST-MHPKGVMVSHHNLLD 194 (590)
T ss_dssp CTTSEEEEEECSSCS-SSCCEEEEEHHHHHH
T ss_pred CCCCeEEEEeCcCCC-CCceEEEeeHHHHHH
Confidence 344556899999999 899999999987643
No 19
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.37 E-value=1.5 Score=45.00 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=22.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+..|++.+..
T Consensus 189 ~~~d~a~i~~TSGTT-G~PKgv~~sh~~~~~ 218 (544)
T 3o83_A 189 PADEVAFFQLSGGST-GTPKLIPRTHNDYDY 218 (544)
T ss_dssp CTTSEEEEEECCC---CCCCEEEEEHHHHHH
T ss_pred CccceEEEEECCCcc-cCCceEEechHHHHH
Confidence 345567889999999 899999999987643
No 20
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=74.20 E-value=1.9 Score=44.13 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=24.0
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+..|++.+..
T Consensus 181 ~~d~a~i~~TSGTT-G~PKgV~~th~~~~~ 209 (539)
T 1mdb_A 181 SSDVAFLQLSGGST-GLSKLIPRTHDDYIY 209 (539)
T ss_dssp TTSEEEEEECCCSS-SSCCEEEEEHHHHHH
T ss_pred cCceEEEEeCCCcC-CCCcEEEEehHHHHH
Confidence 44556899999999 899999999987543
No 21
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=74.05 E-value=1.7 Score=44.43 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.6
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|++.+.
T Consensus 175 ~~d~a~i~~TSGTT-G~PKgV~~sh~~~~ 202 (576)
T 3gqw_A 175 PNDIAYLQYTSGST-RFPRGVIITHREVM 202 (576)
T ss_dssp TTSEEEEECTTSCS-SSCCCEEEEHHHHH
T ss_pred CCCeEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 44556899999999 89999999998763
No 22
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=74.01 E-value=1.7 Score=44.15 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=24.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+..|.+.+..
T Consensus 154 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 182 (505)
T 3nyq_A 154 DGDPALVVYTSGTT-GPPKGAVIPRRALAT 182 (505)
T ss_dssp TTSEEEEEEECCSS-SSCEEEEEEHHHHHH
T ss_pred CCCeEEEEeCCCCc-CCCCeEEEeHHHHHH
Confidence 34456899999999 899999999987644
No 23
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=73.37 E-value=1.6 Score=44.25 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+.+|++.+..
T Consensus 154 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 182 (503)
T 4fuq_A 154 ADDLAAILYTSGTT-GRSKGAMLSHDNLAS 182 (503)
T ss_dssp TTSEEEEEECC--C-CSCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCcc-cCCeEEEEeHHHHHH
Confidence 44556899999999 899999999987643
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.97 E-value=2 Score=44.76 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
.++.+.+...||||| |++|-+.+|++.+..
T Consensus 182 ~~~~~a~ii~TSGST-G~PKgV~~th~~~~~ 211 (617)
T 3rg2_A 182 PADEVAYFQLSGGTT-GTPKLIPRTHNDYYY 211 (617)
T ss_dssp CTTSEEEEEECCCSS-SSCCEEEEEHHHHHH
T ss_pred CCCCeEEEEECCCcC-CCCCEeehhHHHHHH
Confidence 345567899999999 899999999987643
No 25
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.30 E-value=1.5 Score=44.33 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
++.+.+...||||| |++|-+..|++.+..
T Consensus 152 ~~~~a~i~~TSGTT-G~PKgV~~sh~~~~~ 180 (504)
T 1t5h_X 152 PAQPAFIFYTSGTT-GLPKAAIIPQRAAES 180 (504)
T ss_dssp TTSEEEEEECCC----CCCEEEEEGGGHHH
T ss_pred CCCeEEEEeCCCCC-CCCCEEEecHHHHHH
Confidence 34456889999999 899999999987643
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=70.09 E-value=2.3 Score=43.66 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=21.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~ 119 (414)
++.+.+...||||| |++|-+..|++.+...
T Consensus 174 ~~~~a~i~~TSGTT-G~PKgV~~th~~l~~~ 203 (562)
T 3ite_A 174 ENLDAYLLYTSGST-GTPKGVRVSRHNLSSF 203 (562)
T ss_dssp TTSEEEEEEECC----CCEEEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCC-CCCcEEEECchhHHHH
Confidence 34446889999999 8999999999876543
No 27
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=69.38 E-value=1.9 Score=44.16 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=22.7
Q ss_pred cccceEecccCCCCCCcccCcCChHHHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l~~ 118 (414)
+.+.+...||||| |++|-+.+|++.+..
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 207 (549)
T 3g7s_A 180 EDVALIPYTGGTT-GMPKGVMLTHFNLAA 207 (549)
T ss_dssp TSEEECCEECCCC-C-CEEEEEEHHHHHH
T ss_pred CCEEEEEECCCcc-CCCceEEEcHHHHHH
Confidence 5566889999999 899999999987643
No 28
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.40 E-value=2 Score=44.25 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.3
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |++|-+..|++.+
T Consensus 212 ~~~d~a~i~~TSGTT-G~PKgV~~th~~l 239 (570)
T 4gr5_A 212 GPEDVACVMFTSGST-GRPKGVMSPHRAL 239 (570)
T ss_dssp CTTSEEEEECCSSCC-SSCCCEEEEHHHH
T ss_pred CCCCeEEEEECCcCC-CCCeEEEEecHHH
Confidence 345556889999999 8999999998765
No 29
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=66.73 E-value=2 Score=43.95 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=23.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++-+.+...||||| |++|-+..|++.+-
T Consensus 176 ~~~d~a~i~~TSGTT-G~PKgv~~th~~l~ 204 (536)
T 3ni2_A 176 SPDDVVALPYSSGTT-GLPKGVMLTHKGLI 204 (536)
T ss_dssp CTTSEEECCEECTTS-SSCEEEEEEHHHHH
T ss_pred CccCEEEEEcCCCcc-ccchHHHhhHHHHH
Confidence 344556889999999 89999999998753
No 30
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=65.89 E-value=1.7 Score=44.15 Aligned_cols=28 Identities=32% Similarity=0.255 Sum_probs=18.4
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |++|-+.+|++.+
T Consensus 181 ~~~d~a~i~~TSGTT-G~PKgv~~sh~~l 208 (529)
T 2v7b_A 181 GCDDIAFWLYSSGST-GKPKGTVHTHANL 208 (529)
T ss_dssp CTTSEEEEEEC------CCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCC-CCCceEEEEhhHH
Confidence 344556889999999 8999999998865
No 31
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=65.57 E-value=2.6 Score=43.08 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.1
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++.+.+...||||| |++|-+..|++.+
T Consensus 174 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l 201 (541)
T 1v25_A 174 PERAACGMAYTTGTT-GLPKGVVYSHRAL 201 (541)
T ss_dssp CTTSEEEEEEECSSS-SSCEEEEEEHHHH
T ss_pred CCCCcEEEEECCCCC-CCCcEeeeehHHH
Confidence 344556788999999 8999999999875
No 32
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=65.49 E-value=2.3 Score=43.56 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=17.5
Q ss_pred cccceEecccCCCCCCcccCcCChHHH
Q 015052 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 90 ~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
+.+.+...||||| |++|-+.+|++.+
T Consensus 190 ~d~a~i~~TSGTT-G~PKgV~~th~~~ 215 (550)
T 3rix_A 190 KTIALIMNSSGST-GLPKGVALPHRTA 215 (550)
T ss_dssp TSEEEEEEC------CCCEEEEEHHHH
T ss_pred CCEEEEEECCCcc-cCcchhhhhHHHH
Confidence 4456889999999 8999999999865
No 33
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=64.85 E-value=2.4 Score=44.58 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=23.3
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++.+.+...||||| |++|-+.+|++.+
T Consensus 163 ~~d~a~iiyTSGST-G~PKgV~~th~~l 189 (620)
T 4dg8_A 163 ADQIAYINFSSGTT-GRPKAIACTHAGI 189 (620)
T ss_dssp TTSEEEEEEEBSSS-SSCEEEEEEHHHH
T ss_pred CCCeEEEEECCCcc-ccCeEEEEchHHH
Confidence 45567899999999 8999999998875
No 34
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=64.29 E-value=2.3 Score=43.89 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=18.5
Q ss_pred CcccceEecccCCCCCCcccCcCChHHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
++.+.+...||||| |++|-+..|.+.+.
T Consensus 181 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~ 208 (563)
T 1amu_A 181 STDLAYVIYTSGTT-GNPKGTMLEHKGIS 208 (563)
T ss_dssp TTSEEEEEEEC------CEEEEEESHHHH
T ss_pred CCCeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 34456889999999 89999999998763
No 35
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=59.42 E-value=3.2 Score=42.90 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.6
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |++|-+..|.+.+
T Consensus 204 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~~ 231 (570)
T 3c5e_A 204 GSQEASAIYFTSGTS-GLPKMAEHSYSSL 231 (570)
T ss_dssp BTTSEEEEEECCCSS-SSCCEEEEEHHHH
T ss_pred CCCCcEEEEECCCCC-CCCCEEEechHHH
Confidence 344456889999999 8999999998843
No 36
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=58.06 E-value=2.6 Score=44.39 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=22.8
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++-+.+...||||| |++|-+..|+..+
T Consensus 255 ~~d~a~ilyTSGTT-G~PKgV~~sh~~~ 281 (652)
T 1pg4_A 255 AEDPLFILYTSGST-GKPKGVLHTTGGY 281 (652)
T ss_dssp TTSEEEEEEECCSS-SSCEEEEEESHHH
T ss_pred CCCCEEEEeccCCC-CCCceEEECchHH
Confidence 44456899999999 8999999998864
No 37
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=57.97 E-value=3.2 Score=43.91 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.6
Q ss_pred CcccceEecccCCCCCCcccCcCChHHH
Q 015052 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
++-+.+...||||| |++|-+..|...+
T Consensus 261 ~~d~a~ilyTSGTT-G~PKgV~~sh~~~ 287 (663)
T 1ry2_A 261 SEDPLFLLYTSGST-GAPKGVQHSTAGY 287 (663)
T ss_dssp TTSCCEEEEECCSS-SSCEEEEECSHHH
T ss_pred CCCceEEEeccCCC-CCCceEEEchhHH
Confidence 34456899999999 8999999998864
No 38
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=55.64 E-value=4.9 Score=44.38 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=23.8
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~ 117 (414)
.++-+.+...||||| |++|-+.+|++.+-
T Consensus 223 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 251 (979)
T 3tsy_A 223 SPDDVVALPYSSGTT-GLPKGVMLTHKGLV 251 (979)
T ss_dssp CTTSEEECCBCCCSS-SSCCBEEEEHHHHH
T ss_pred CccceEEEEeCCCCC-CCCeEEEechHHHH
Confidence 344556889999999 89999999998763
No 39
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=48.78 E-value=58 Score=32.88 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=46.7
Q ss_pred cCCCCceeEEEecCC---hHHHHHHHHhHhCCCCcccccccccceeeeecCCC--CCCcccceeeecCCceEEEeeecCC
Q 015052 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNP--SLPPELATFAVLPNIGYFEFIPQRL 365 (414)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~igi~~~~--~~~~~~~~~~l~p~~~ffEFIp~~~ 365 (414)
-.++|+ .+.+|+ ...-.+++++.++...++ .+||.||+...+...+ ...++..+. ..|+.. .+.+..+
T Consensus 305 ~l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~~~-~~i~d~~- 377 (550)
T 3rix_A 305 DLSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVPFFE-AKVVDLD- 377 (550)
T ss_dssp CCTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEE-ECTTCE-EEEECTT-
T ss_pred Cccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCccc-ccCCcE-EEEEeCC-
Confidence 357787 444444 455566777777664455 8999999853332222 222222222 334432 2333322
Q ss_pred CCccccccCCCCceeccCCcccCCeEEEEEecC
Q 015052 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (414)
Q Consensus 366 ~~~~~~~~~~~~~tl~l~ele~G~~YelViTt~ 398 (414)
+ . ..|..|+.-||+|+..
T Consensus 378 -~---------~-----~~~~~g~~GEl~v~g~ 395 (550)
T 3rix_A 378 -T---------G-----KTLGVNQRGELCVRGP 395 (550)
T ss_dssp -T---------C-----CBCCTTCCEEEEEEST
T ss_pred -C---------C-----cCCCCCCCeEEEEeCC
Confidence 1 1 3467788999999863
No 40
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=46.17 E-value=7.1 Score=44.66 Aligned_cols=28 Identities=32% Similarity=0.224 Sum_probs=23.7
Q ss_pred cCcccceEecccCCCCCCcccCcCChHHH
Q 015052 88 TGKPITTISRSSGTTQGKPKFLPFNDELM 116 (414)
Q Consensus 88 ~~~pi~~f~~TSGTT~g~~K~IP~T~~~l 116 (414)
.++-+.+...||||| |++|-+.+|.+.+
T Consensus 605 ~~~~~ayiiyTSGST-G~PKgV~~~h~~l 632 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTT-GKPKGNITTHANI 632 (1304)
T ss_dssp CTTSEEEEEEECCSS-SSCEEEEEEHHHH
T ss_pred CCCCeEEEEeCCCCC-CCCCEEEEehHHH
Confidence 345567899999999 9999999999875
No 41
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=43.28 E-value=53 Score=33.09 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=28.4
Q ss_pred ccCCCCceeEEEecCC---hHHHHHHHHhHhCCCCccccccccccee
Q 015052 290 ELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (414)
Q Consensus 290 ~lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ 333 (414)
.-.++|+ .+.+|+ ...-.+++++.+++++++ .+||.||+.
T Consensus 294 ~~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~ 336 (536)
T 3ni2_A 294 HDLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAG 336 (536)
T ss_dssp SCCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGS
T ss_pred CCCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccc
Confidence 3457888 333343 455667777888888887 899999985
No 42
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=36.96 E-value=11 Score=22.78 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.7
Q ss_pred hhhhccCCcCCCC
Q 015052 401 AGSLFSRIPICGL 413 (414)
Q Consensus 401 LyRY~~~~~~~~~ 413 (414)
-||=.||||-||.
T Consensus 9 C~~~~~riPCCG~ 21 (28)
T 1y29_A 9 CYGATQKIPCCGV 21 (28)
T ss_dssp CCTTCCSCCBSSC
T ss_pred ccCCccccccccc
Confidence 3677899999984
No 43
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=35.97 E-value=1.3e+02 Score=30.06 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=43.6
Q ss_pred CCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccce-eeee-cCCCCCCcccceeeecCCceEEEeeecCCCCcc
Q 015052 294 NAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGA-NVNPSLPPELATFAVLPNIGYFEFIPQRLGNLE 369 (414)
Q Consensus 294 ~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg-~igi-~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~ 369 (414)
.|+. ++.+|. .....+++++.+ +++++ .+||.||+ .+.+ +.......+..+. ..|+.. .+.++.+
T Consensus 301 ~lr~--~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~-~~i~d~~----- 369 (529)
T 2v7b_A 301 AIRI--CTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPGYE-IELRDEA----- 369 (529)
T ss_dssp CCCE--EEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTTCE-EEEECTT-----
T ss_pred ceEE--EEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCCCE-EEEECCC-----
Confidence 5662 233343 455566677666 56777 89999997 3332 2111111222222 334432 2333211
Q ss_pred ccccCCCCceeccCCcccCCeEEEEEecC
Q 015052 370 SQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (414)
Q Consensus 370 ~~~~~~~~~tl~l~ele~G~~YelViTt~ 398 (414)
. ..|..|+.-||+|+..
T Consensus 370 -------g-----~~~~~g~~GEl~v~g~ 386 (529)
T 2v7b_A 370 -------G-----HAVPDGEVGDLYIKGP 386 (529)
T ss_dssp -------S-----CBCCTTSCEEEEEECT
T ss_pred -------C-----CCCCCCCccEEEEecC
Confidence 1 3466789999999863
No 44
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=34.99 E-value=1.3e+02 Score=30.64 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=25.9
Q ss_pred CCCCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccceeee
Q 015052 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIG 335 (414)
Q Consensus 292 WP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ig 335 (414)
.++|+.| +.+|. ...-++++++.+ +++++ .+||.||+.+.
T Consensus 321 ~~~lr~i--~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~ 362 (570)
T 3c5e_A 321 FPHLQNC--VTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLT 362 (570)
T ss_dssp CTTCCEE--EEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEE
T ss_pred cccceEE--EEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccc
Confidence 5777733 33343 445556666666 56777 89999998643
No 45
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=34.49 E-value=2.1e+02 Score=28.16 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCC---hHHHHHHHHhHhCCCCcccccccccceeeeec
Q 015052 267 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN 337 (414)
Q Consensus 267 ~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~igi~ 337 (414)
.|...+.|.+...+. .-..-.++|+ .+..|+ ...-++++++.+| .+++ ..||.||+.+.+.
T Consensus 251 ~P~~~~~l~~~~~~~-----~~~~~l~~lr---~~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~ 314 (504)
T 1t5h_X 251 TPTHLDALAAAAAHA-----GSSLKLDSLR---HVTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLY 314 (504)
T ss_dssp CHHHHHHHHHHHCCT-----TCCCCCTTCC---EEEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEE
T ss_pred ChHHHHHHHhhhccc-----cccccCcccc---EEEEcCCcCCHHHHHHHHHhcC-ccee-eeecccccccccc
Confidence 355666665543220 0112357787 344444 4555567777775 4666 8999999854443
No 46
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=29.33 E-value=56 Score=26.65 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhccC----CCCCCcHHHHHHHhccC--CCCHHHHHHHHHHhcCCCCC
Q 015052 232 ELVWEELCDDIREGVL----SSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (414)
Q Consensus 232 ~~~w~el~~dI~~Gt~----~~~i~~~~~R~~l~~~l--~~~p~rA~~L~~~~~k~~g~ 284 (414)
++.=.+++..|.+... ...++..+|+..+.++. .|.|+-.+++++.+... ||
T Consensus 43 deEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~-GW 100 (112)
T 2m0n_A 43 EEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAG-GW 100 (112)
T ss_dssp HHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHC-CT
T ss_pred HHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhc-CC
Confidence 4455667777654432 23577789999999988 68888888887776654 76
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=29.32 E-value=49 Score=33.39 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccceeeeec
Q 015052 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN 337 (414)
Q Consensus 292 WP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~igi~ 337 (414)
.++|+.| +.+|. .....+++++.+ +++++ .+||.||+.+...
T Consensus 297 l~~lr~~--~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~ 340 (539)
T 1mdb_A 297 LSSLQVL--QVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYT 340 (539)
T ss_dssp CTTCCEE--EEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEEC
T ss_pred ccceeEE--EEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCccccc
Confidence 4778732 23333 445556666666 45776 8999999876554
No 48
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=28.58 E-value=1.2e+02 Score=30.23 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred ccCCCCceeEEEecCC--hHHHHHHHHhHhCCCCcccccccccceee
Q 015052 290 ELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWI 334 (414)
Q Consensus 290 ~lWP~L~~i~~~~~G~--~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~i 334 (414)
.-.|+|+. ++.+|. ...-++++.+.+++++++ .+||.||+..
T Consensus 261 ~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~ 304 (521)
T 3l8c_A 261 AKMPALTH--FYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATV 304 (521)
T ss_dssp TTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSS
T ss_pred ccCccceE--EEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhh
Confidence 34567773 233443 455567777778888888 9999999753
No 49
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=28.01 E-value=3e+02 Score=27.12 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.3
Q ss_pred ccCCCCceeEEEecCC---hHHHHHHHHhHhCCCCcccccccccceeee
Q 015052 290 ELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIG 335 (414)
Q Consensus 290 ~lWP~L~~i~~~~~G~---~~~Y~~~l~~~~~~vpi~~~~Y~ASEg~ig 335 (414)
...++|+ .+.+|+ ...-.+++++.++ ++++ ..||.||+.+.
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~ 308 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKTG-HAVL-ERYGMTETNMN 308 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHHS-CCEE-ECCEETTTEEC
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHhC-CCcc-ceEcccccCcc
Confidence 4467777 444444 4444555666665 4776 88999998654
No 50
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=27.06 E-value=54 Score=26.55 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhccC-CCCCCcHHHHHHHhccC--CCCHHHHHHHHHHhcCCCCC
Q 015052 232 ELVWEELCDDIREGVL-SSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (414)
Q Consensus 232 ~~~w~el~~dI~~Gt~-~~~i~~~~~R~~l~~~l--~~~p~rA~~L~~~~~k~~g~ 284 (414)
+++=.+++..|.+... ...++..+|+..+.++- .|.|+-.+++++.+... ||
T Consensus 46 ddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~-GW 100 (107)
T 3ol3_A 46 EDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASV-GW 100 (107)
T ss_dssp HHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhc-CC
Confidence 4445566666654333 23477788999998877 58888888888877764 76
No 51
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=21.76 E-value=90 Score=25.05 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCcHHHHHHHhccC--CCCHHHHHHHHHHhcCCCCC
Q 015052 232 ELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (414)
Q Consensus 232 ~~~w~el~~dI~~Gt~~~~i~~~~~R~~l~~~l--~~~p~rA~~L~~~~~k~~g~ 284 (414)
+++=.++++.+.... .++..+|+..+..+. .|.|+-.+++++.+... ||
T Consensus 41 deev~~Va~~L~~~~---~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~-GW 91 (103)
T 2kvc_A 41 HDEVKAVANELMRLG---DFDQIDIGVVITHFTDELPSPEDVERVRARLAAQ-GW 91 (103)
T ss_dssp HHHHHHHHHHHHHHT---SSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGG-CC
T ss_pred HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CC
Confidence 444555666554332 377778999999888 58888888888777764 76
No 52
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=21.05 E-value=69 Score=26.13 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCcHHHHHHHhccC--CCCHHHHHHHHHHhcCCCCC
Q 015052 232 ELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (414)
Q Consensus 232 ~~~w~el~~dI~~Gt~~~~i~~~~~R~~l~~~l--~~~p~rA~~L~~~~~k~~g~ 284 (414)
+++=.++++.+.... .++..+|+..+..+. .|.|+-.+++++.+... ||
T Consensus 43 deev~~Va~~L~~~~---~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~-GW 93 (112)
T 2lky_A 43 NDEIKAIAEDLEKRA---HFDHIDIGVLITQMTDEMPREEDIERVRRHLALQ-GW 93 (112)
T ss_dssp HHHHHHHHHHHHHHC---CCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CC
Confidence 444455555554332 366667888888877 57888888888877764 77
Done!