Query 015054
Match_columns 414
No_of_seqs 242 out of 475
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 5.3E-57 1.1E-61 448.0 18.0 213 5-219 1-216 (336)
2 cd03571 ENTH_epsin ENTH domain 100.0 4.1E-47 8.8E-52 332.3 12.9 123 25-147 1-123 (123)
3 KOG2057 Predicted equilibrativ 100.0 4.6E-45 9.9E-50 360.1 16.5 181 6-186 4-193 (499)
4 PF01417 ENTH: ENTH domain; I 100.0 1.8E-41 3.9E-46 293.8 14.0 124 23-146 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 2.3E-33 5E-38 243.5 13.1 126 24-150 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 4.2E-26 9E-31 199.8 11.5 114 28-144 4-121 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 3E-22 6.5E-27 170.5 12.4 114 26-142 1-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 2E-18 4.4E-23 148.6 10.2 112 26-140 1-114 (117)
9 KOG1924 RhoA GTPase effector D 99.7 1.5E-15 3.3E-20 163.3 18.0 107 43-163 368-486 (1102)
10 KOG1924 RhoA GTPase effector D 99.2 2.2E-11 4.7E-16 131.8 9.0 145 3-152 207-380 (1102)
11 PF07651 ANTH: ANTH domain; I 98.8 2.3E-08 5E-13 96.8 8.4 112 24-136 2-116 (280)
12 KOG0251 Clathrin assembly prot 98.5 8.2E-07 1.8E-11 94.1 11.5 109 22-134 20-132 (491)
13 PF00790 VHS: VHS domain; Int 98.3 7.7E-06 1.7E-10 72.7 10.5 111 23-140 3-116 (140)
14 smart00288 VHS Domain present 98.0 9E-05 1.9E-09 65.7 11.1 107 27-140 2-109 (133)
15 cd03568 VHS_STAM VHS domain fa 97.9 0.00012 2.5E-09 66.2 11.6 107 27-141 2-109 (144)
16 cd03565 VHS_Tom1 VHS domain fa 97.9 0.00017 3.6E-09 64.9 11.7 112 25-141 1-114 (141)
17 cd03561 VHS VHS domain family; 97.9 0.00018 3.8E-09 63.6 11.2 108 27-140 2-110 (133)
18 cd03569 VHS_Hrs_Vps27p VHS dom 97.8 0.00021 4.6E-09 64.3 11.5 111 23-141 2-113 (142)
19 cd03567 VHS_GGA VHS domain fam 97.8 0.00037 8.1E-09 62.8 11.9 110 26-141 2-115 (139)
20 KOG1087 Cytosolic sorting prot 97.2 0.0024 5.2E-08 67.9 11.4 107 26-139 2-109 (470)
21 KOG3671 Actin regulatory prote 97.2 0.0011 2.4E-08 70.3 7.8 23 125-147 118-142 (569)
22 KOG2199 Signal transducing ada 96.7 0.016 3.5E-07 60.5 11.2 85 22-112 5-96 (462)
23 KOG1923 Rac1 GTPase effector F 96.0 0.018 3.9E-07 64.0 7.5 11 82-92 93-103 (830)
24 KOG3671 Actin regulatory prote 95.9 0.02 4.3E-07 61.2 7.4 13 141-153 123-135 (569)
25 KOG1923 Rac1 GTPase effector F 95.9 0.044 9.6E-07 61.1 10.1 11 398-408 371-381 (830)
26 PHA03247 large tegument protei 95.4 0.037 7.9E-07 68.2 7.9 10 31-40 2348-2359(3151)
27 KOG1922 Rho GTPase effector BN 95.1 0.11 2.4E-06 58.4 10.1 12 397-408 395-406 (833)
28 PRK15319 AIDA autotransporter- 94.8 0.044 9.5E-07 65.9 6.1 11 288-298 1644-1654(2039)
29 PRK15319 AIDA autotransporter- 94.8 0.04 8.7E-07 66.3 5.6 6 402-407 1764-1769(2039)
30 KOG1925 Rac1 GTPase effector F 94.7 0.053 1.1E-06 58.3 5.6 30 325-354 240-269 (817)
31 PHA01732 proline-rich protein 94.5 0.043 9.3E-07 46.4 3.6 16 371-386 59-74 (94)
32 KOG4672 Uncharacterized conser 94.0 0.59 1.3E-05 49.3 11.4 6 200-205 198-203 (487)
33 COG5178 PRP8 U5 snRNP spliceos 93.3 0.057 1.2E-06 62.5 2.9 13 319-331 6-18 (2365)
34 KOG1922 Rho GTPase effector BN 92.1 0.78 1.7E-05 51.8 9.8 21 387-408 399-419 (833)
35 KOG1830 Wiskott Aldrich syndro 91.5 0.61 1.3E-05 49.4 7.5 18 74-91 94-111 (518)
36 KOG1925 Rac1 GTPase effector F 90.5 0.45 9.7E-06 51.5 5.6 12 397-408 304-315 (817)
37 KOG0980 Actin-binding protein 89.8 0.8 1.7E-05 52.2 7.0 107 28-138 9-115 (980)
38 KOG4672 Uncharacterized conser 89.2 8.2 0.00018 41.1 13.4 12 45-56 55-66 (487)
39 KOG1086 Cytosolic sorting prot 88.5 1.5 3.3E-05 46.9 7.6 75 24-104 7-86 (594)
40 cd03562 CID CID (CTD-Interacti 88.4 5.3 0.00011 33.9 9.7 101 27-141 5-107 (114)
41 PRK15313 autotransport protein 86.9 1.8 3.9E-05 49.9 7.5 13 286-298 535-547 (955)
42 KOG4849 mRNA cleavage factor I 85.9 2.6 5.6E-05 44.1 7.4 17 126-142 130-146 (498)
43 PRK15313 autotransport protein 85.0 1.8 3.8E-05 50.0 6.3 7 401-407 678-684 (955)
44 PRK09752 adhesin; Provisional 84.8 0.93 2E-05 53.3 4.0 10 289-298 897-906 (1250)
45 smart00582 RPR domain present 84.7 9 0.00019 32.6 9.2 95 41-142 11-107 (121)
46 KOG0132 RNA polymerase II C-te 83.5 3.9 8.5E-05 46.4 8.0 8 35-42 80-87 (894)
47 KOG1830 Wiskott Aldrich syndro 80.1 6.4 0.00014 42.1 7.7 8 140-147 166-173 (518)
48 KOG2176 Exocyst complex, subun 79.4 1.5 3.3E-05 49.5 3.1 98 24-141 16-115 (800)
49 KOG0921 Dosage compensation co 79.0 8.1 0.00018 45.0 8.5 15 170-184 1184-1198(1282)
50 KOG0921 Dosage compensation co 78.1 11 0.00023 44.0 9.1 16 39-54 951-966 (1282)
51 KOG4849 mRNA cleavage factor I 77.6 5.1 0.00011 42.0 6.0 11 399-409 358-368 (498)
52 PF05308 Mito_fiss_reg: Mitoch 77.6 1.8 4E-05 42.9 2.8 6 122-127 8-13 (253)
53 PF01213 CAP_N: Adenylate cycl 77.6 0.73 1.6E-05 47.0 0.0 33 84-116 140-175 (312)
54 KOG1818 Membrane trafficking a 75.9 9.1 0.0002 42.7 7.7 107 24-139 7-116 (634)
55 PF12755 Vac14_Fab1_bd: Vacuol 75.2 18 0.00039 30.7 7.8 75 57-142 23-97 (97)
56 PRK11115 transcriptional regul 75.0 64 0.0014 30.4 12.4 88 1-92 10-101 (236)
57 KOG0132 RNA polymerase II C-te 72.7 10 0.00022 43.2 7.2 7 46-52 66-72 (894)
58 KOG2893 Zn finger protein [Gen 72.1 36 0.00077 34.3 10.0 15 237-251 78-92 (341)
59 KOG2160 Armadillo/beta-catenin 70.8 43 0.00093 35.0 10.7 79 16-94 158-242 (342)
60 PF04625 DEC-1_N: DEC-1 protei 70.2 11 0.00023 39.2 6.1 10 368-377 147-156 (407)
61 KOG2675 Adenylate cyclase-asso 68.5 4.7 0.0001 43.1 3.3 6 246-251 175-180 (480)
62 PHA03378 EBNA-3B; Provisional 65.4 18 0.00039 41.0 7.1 11 140-150 417-427 (991)
63 PRK14950 DNA polymerase III su 64.4 33 0.00072 37.6 9.0 6 402-407 470-475 (585)
64 KOG0037 Ca2+-binding protein, 63.6 19 0.00041 35.4 6.2 53 27-83 76-132 (221)
65 PF01213 CAP_N: Adenylate cycl 59.1 3.1 6.7E-05 42.5 0.0 8 56-63 46-53 (312)
66 PF12755 Vac14_Fab1_bd: Vacuol 56.2 36 0.00078 28.9 6.0 60 22-92 35-96 (97)
67 COG5602 SIN3 Histone deacetyla 55.9 30 0.00065 40.3 6.9 69 14-84 578-658 (1163)
68 KOG1984 Vesicle coat complex C 54.9 41 0.00088 39.2 7.7 9 285-293 13-21 (1007)
69 PF01603 B56: Protein phosphat 51.5 1.7E+02 0.0037 30.7 11.3 98 39-143 264-371 (409)
70 KOG0559 Dihydrolipoamide succi 50.8 40 0.00086 35.8 6.3 6 286-291 148-153 (457)
71 KOG2677 Stoned B synaptic vesi 50.6 41 0.00088 38.1 6.7 30 290-319 58-87 (922)
72 PRK14948 DNA polymerase III su 50.3 42 0.00092 37.3 6.9 28 80-107 262-291 (620)
73 PRK14948 DNA polymerase III su 48.9 55 0.0012 36.5 7.5 18 37-54 196-213 (620)
74 TIGR03036 trp_2_3_diox tryptop 47.1 1.1E+02 0.0025 30.8 8.7 34 128-164 200-233 (264)
75 PF06003 SMN: Survival motor n 46.6 6.5 0.00014 39.1 0.0 11 101-111 7-17 (264)
76 PLN03131 hypothetical protein; 46.0 63 0.0014 36.4 7.3 24 233-256 203-228 (705)
77 KOG0396 Uncharacterized conser 45.8 1.7E+02 0.0037 31.1 10.0 39 59-97 84-133 (389)
78 KOG0566 Inositol-1,4,5-triphos 45.7 25 0.00053 41.2 4.3 7 297-303 999-1005(1080)
79 PF12612 TFCD_C: Tubulin foldi 45.4 50 0.0011 30.8 5.7 67 24-98 98-164 (193)
80 PHA03378 EBNA-3B; Provisional 45.3 58 0.0013 37.2 6.9 20 135-154 504-523 (991)
81 PF12717 Cnd1: non-SMC mitotic 44.2 1.5E+02 0.0033 27.0 8.6 53 46-100 9-62 (178)
82 PF03276 Gag_spuma: Spumavirus 43.5 53 0.0012 36.3 6.2 33 75-107 64-96 (582)
83 KOG3397 Acetyltransferases [Ge 43.4 20 0.00044 34.5 2.7 14 90-103 60-73 (225)
84 COG5218 YCG1 Chromosome conden 42.7 97 0.0021 35.1 8.0 90 42-143 27-121 (885)
85 PLN02983 biotin carboxyl carri 41.4 49 0.0011 33.6 5.1 7 374-380 206-212 (274)
86 PF10151 DUF2359: Uncharacteri 41.3 44 0.00095 36.2 5.2 58 60-120 167-232 (469)
87 KOG2391 Vacuolar sorting prote 40.3 1.1E+02 0.0023 32.2 7.5 9 277-285 115-123 (365)
88 COG2180 NarJ Nitrate reductase 39.9 69 0.0015 30.6 5.7 70 6-85 87-161 (179)
89 PF08513 LisH: LisH; InterPro 39.7 38 0.00083 22.3 2.8 20 85-104 6-25 (27)
90 COG4974 XerD Site-specific rec 39.2 21 0.00046 36.6 2.3 31 88-119 254-285 (300)
91 PRK12323 DNA polymerase III su 38.8 6.7E+02 0.014 28.9 14.3 79 81-162 267-345 (700)
92 smart00667 LisH Lissencephaly 38.7 35 0.00075 21.9 2.6 21 85-105 9-29 (34)
93 KOG0624 dsRNA-activated protei 37.5 3E+02 0.0064 29.7 10.2 52 42-93 222-275 (504)
94 KOG1984 Vesicle coat complex C 37.1 1.3E+02 0.0028 35.3 8.2 18 176-193 19-36 (1007)
95 PRK15054 nitrate reductase 2 s 37.0 95 0.0021 30.8 6.3 72 6-87 81-157 (231)
96 PF09339 HTH_IclR: IclR helix- 36.7 21 0.00046 26.3 1.4 39 80-118 2-48 (52)
97 PF02847 MA3: MA3 domain; Int 36.0 2.2E+02 0.0047 23.6 7.7 37 57-95 32-68 (113)
98 KOG1525 Sister chromatid cohes 35.4 1.5E+02 0.0031 36.2 8.6 121 29-153 409-538 (1266)
99 PF06881 Elongin_A: RNA polyme 34.5 43 0.00094 28.7 3.2 42 40-84 18-72 (109)
100 KOG2607 CDK5 activator-binding 34.2 1.8E+02 0.0038 31.6 8.1 52 5-72 28-79 (505)
101 PF08467 Luteo_P1-P2: Luteovir 33.7 73 0.0016 33.0 5.1 40 124-163 139-178 (361)
102 KOG0119 Splicing factor 1/bran 33.2 1.6E+02 0.0035 32.5 7.7 16 126-141 214-229 (554)
103 PF07462 MSP1_C: Merozoite sur 33.0 84 0.0018 34.8 5.7 45 43-88 63-108 (574)
104 PF07064 RIC1: RIC1; InterPro 32.5 4E+02 0.0088 26.5 10.0 71 24-97 116-196 (258)
105 PF11802 CENP-K: Centromere-as 32.3 69 0.0015 32.4 4.6 75 21-95 164-250 (268)
106 PF12238 MSA-2c: Merozoite sur 32.2 2.1E+02 0.0046 28.0 7.7 9 292-300 131-139 (205)
107 KOG4462 WASP-interacting prote 32.0 2.4E+02 0.0051 30.1 8.5 95 307-409 311-418 (437)
108 smart00533 MUTSd DNA-binding d 31.8 4.8E+02 0.01 25.2 10.9 73 9-88 17-92 (308)
109 TIGR02986 restrict_Alw26I type 31.8 90 0.002 33.4 5.5 25 83-107 345-369 (424)
110 PF10978 DUF2785: Protein of u 31.6 50 0.0011 30.7 3.3 88 14-105 42-143 (175)
111 PRK14137 recX recombination re 31.0 2.8E+02 0.006 26.6 8.3 50 57-109 132-182 (195)
112 smart00346 HTH_ICLR helix_turn 30.7 1.5E+02 0.0032 23.5 5.6 41 79-119 3-51 (91)
113 KOG1029 Endocytic adaptor prot 30.4 1.8E+02 0.0039 33.9 7.8 10 309-318 84-93 (1118)
114 PRK14954 DNA polymerase III su 30.4 1.4E+02 0.003 33.5 6.9 7 379-385 463-469 (620)
115 PF14979 TMEM52: Transmembrane 29.1 60 0.0013 30.3 3.3 19 286-304 117-135 (154)
116 PF07571 DUF1546: Protein of u 29.0 1.8E+02 0.0038 24.4 5.9 51 43-97 27-80 (92)
117 PF12238 MSA-2c: Merozoite sur 28.9 1.7E+02 0.0038 28.5 6.6 10 147-156 80-89 (205)
118 cd06224 REM Guanine nucleotide 28.7 2.9E+02 0.0064 22.9 7.3 84 26-115 2-98 (122)
119 PF03564 DUF1759: Protein of u 28.4 89 0.0019 27.2 4.2 57 11-74 10-71 (145)
120 PF05600 DUF773: Protein of un 28.2 2.6E+02 0.0057 30.6 8.5 18 52-69 61-78 (507)
121 TIGR02135 phoU_full phosphate 28.1 4.4E+02 0.0095 23.6 11.7 62 5-70 3-65 (212)
122 TIGR00624 tag DNA-3-methyladen 27.7 1E+02 0.0022 29.3 4.7 31 122-152 61-91 (179)
123 KOG2236 Uncharacterized conser 27.2 1.6E+02 0.0035 32.1 6.5 12 148-159 324-335 (483)
124 COG3404 Methenyl tetrahydrofol 26.8 2E+02 0.0043 28.2 6.5 36 75-110 121-156 (208)
125 COG3682 Predicted transcriptio 26.6 3.9E+02 0.0084 24.2 7.9 14 21-34 2-15 (123)
126 cd03817 GT1_UGDG_like This fam 26.6 64 0.0014 30.2 3.2 30 131-160 332-361 (374)
127 PRK07764 DNA polymerase III su 26.4 1.1E+03 0.024 27.6 14.1 33 80-112 263-297 (824)
128 PRK14963 DNA polymerase III su 26.3 7.8E+02 0.017 26.8 11.7 64 29-94 183-271 (504)
129 COG5110 RPN1 26S proteasome re 26.1 4.2E+02 0.0092 30.1 9.5 33 83-115 183-215 (881)
130 TIGR02552 LcrH_SycD type III s 25.6 3.8E+02 0.0083 22.1 9.2 57 22-80 32-88 (135)
131 KOG1488 Translational represso 25.6 2.7E+02 0.006 30.6 8.0 45 97-141 355-405 (503)
132 PF01767 Birna_VP3: Birnavirus 25.5 58 0.0013 32.4 2.7 43 80-135 45-87 (243)
133 KOG2049 Translational represso 25.3 4.2E+02 0.0091 29.5 9.4 64 43-109 304-370 (536)
134 PF09440 eIF3_N: eIF3 subunit 24.9 1.7E+02 0.0036 26.5 5.4 52 93-158 58-110 (133)
135 PF14638 FNIP_C: Folliculin-in 24.8 1.1E+02 0.0024 29.4 4.4 30 63-98 132-161 (192)
136 cd04962 GT1_like_5 This family 24.8 90 0.002 30.2 3.9 33 128-160 322-355 (371)
137 PF02961 BAF: Barrier to autoi 24.5 1E+02 0.0022 26.5 3.6 45 57-106 22-68 (89)
138 KOG4380 Carnitine deficiency a 24.5 6.2E+02 0.013 24.9 9.3 104 49-162 120-225 (244)
139 PF04637 Herpes_pp85: Herpesvi 24.2 1.8E+02 0.0038 32.0 6.3 73 85-162 18-94 (501)
140 PRK00400 hisE phosphoribosyl-A 24.1 1.6E+02 0.0034 25.8 4.9 31 42-72 56-94 (105)
141 COG2137 OraA Uncharacterized p 23.8 4E+02 0.0086 25.2 7.8 65 41-106 99-164 (174)
142 smart00342 HTH_ARAC helix_turn 23.7 1.5E+02 0.0033 22.1 4.3 45 46-93 4-49 (84)
143 PRK12283 tryptophanyl-tRNA syn 23.7 2.9E+02 0.0063 29.5 7.6 54 62-115 343-396 (398)
144 PF08542 Rep_fac_C: Replicatio 23.5 3E+02 0.0065 21.9 6.2 41 60-100 38-81 (89)
145 cd03821 GT1_Bme6_like This fam 23.4 1E+02 0.0022 28.7 3.9 32 129-160 332-364 (375)
146 cd03820 GT1_amsD_like This fam 23.4 1.4E+02 0.0029 27.5 4.6 33 128-160 305-337 (348)
147 KOG3404 G10 protein/predicted 23.2 1.5E+02 0.0032 27.2 4.6 86 23-120 22-111 (145)
148 KOG2374 Uncharacterized conser 23.1 3.9E+02 0.0084 29.8 8.4 62 27-90 9-71 (661)
149 PF07462 MSP1_C: Merozoite sur 23.0 1.9E+02 0.0042 32.2 6.2 14 135-148 142-155 (574)
150 KOG1488 Translational represso 22.9 2E+02 0.0044 31.6 6.4 67 29-106 317-400 (503)
151 COG5117 NOC3 Protein involved 22.8 3E+02 0.0064 30.5 7.5 57 59-116 288-344 (657)
152 PF04961 FTCD_C: Formiminotran 22.7 1.2E+02 0.0027 28.5 4.3 68 75-155 116-183 (184)
153 PF03301 Trp_dioxygenase: Tryp 22.7 5.7E+02 0.012 26.9 9.4 36 128-166 280-315 (346)
154 PF11262 Tho2: Transcription f 22.5 4.3E+02 0.0094 26.6 8.4 40 54-93 212-257 (298)
155 PF10163 EnY2: Transcription f 22.4 3.3E+02 0.0071 22.5 6.3 47 46-95 3-49 (86)
156 PF13524 Glyco_trans_1_2: Glyc 22.4 1.7E+02 0.0038 23.0 4.6 29 128-156 48-76 (92)
157 PF10428 SOG2: RAM signalling 22.3 4.8E+02 0.01 28.0 9.0 67 3-71 299-369 (445)
158 KOG4425 Uncharacterized conser 22.2 1.5E+02 0.0032 32.8 5.2 8 374-381 183-190 (900)
159 PF00618 RasGEF_N: RasGEF N-te 22.1 2.7E+02 0.0058 22.8 5.7 84 25-115 6-104 (104)
160 PRK00927 tryptophanyl-tRNA syn 22.0 2.5E+02 0.0055 28.7 6.7 30 85-114 300-329 (333)
161 cd09236 V_AnPalA_UmRIM20_like 21.6 8.9E+02 0.019 24.9 12.5 65 96-160 151-222 (353)
162 PRK14136 recX recombination re 21.6 3.8E+02 0.0082 27.8 7.7 46 55-103 253-299 (309)
163 KOG3837 Uncharacterized conser 21.5 1.4E+02 0.0031 32.4 4.8 10 291-300 136-145 (523)
164 KOG4286 Dystrophin-like protei 21.5 6.2E+02 0.013 29.7 9.9 44 44-90 188-232 (966)
165 PF10274 ParcG: Parkin co-regu 21.5 5.3E+02 0.011 24.7 8.2 79 60-140 79-162 (183)
166 smart00229 RasGEFN Guanine nuc 21.4 5E+02 0.011 21.9 7.7 71 24-96 8-88 (127)
167 COG1777 Predicted transcriptio 21.2 1.7E+02 0.0036 28.9 4.8 49 57-109 146-194 (217)
168 KOG4307 RNA binding protein RB 21.2 6.1E+02 0.013 29.5 9.7 12 76-87 18-29 (944)
169 KOG3120 Predicted haloacid deh 20.9 3E+02 0.0066 27.7 6.6 74 50-123 46-143 (256)
170 TIGR01042 V-ATPase_V1_A V-type 20.8 3.2E+02 0.007 30.7 7.5 21 10-30 456-476 (591)
171 PRK10353 3-methyl-adenine DNA 20.7 2E+02 0.0044 27.5 5.3 31 122-152 62-92 (187)
172 PF13949 ALIX_LYPXL_bnd: ALIX 20.5 7.9E+02 0.017 23.9 10.0 80 78-160 80-171 (296)
173 cd00166 SAM Sterile alpha moti 20.4 89 0.0019 22.7 2.3 31 85-115 6-36 (63)
174 PRK14954 DNA polymerase III su 20.3 5.2E+02 0.011 29.1 9.1 7 293-299 364-370 (620)
175 PF15112 DUF4559: Domain of un 20.2 6.9E+02 0.015 26.0 9.2 45 96-147 228-273 (307)
176 cd03814 GT1_like_2 This family 20.0 1.2E+02 0.0026 28.4 3.7 30 128-157 318-347 (364)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-57 Score=448.02 Aligned_cols=213 Identities=48% Similarity=0.747 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHH
Q 015054 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL 84 (414)
Q Consensus 5 ~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL 84 (414)
+.+++++|||.++|+|++|+++|+||++||+||+|||++++|+|||++||++.+|.+||.||||||+++||+||||||||
T Consensus 1 ~~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 1 GTMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred CcccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccc
Q 015054 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~~ 164 (414)
+||||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+|||+|+.||+|+++|++||++|+++|+||.+.+
T Consensus 81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~ 160 (336)
T KOG2056|consen 81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFG 160 (336)
T ss_pred HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcC-CCCCCCCCCCCCCCCcccccCCC-CC-CCCCCCCCcccCCCCCCCCCCCCC
Q 015054 165 AGGMYR-PGSYSSSGGNGDRYDNDRYEGRY-GN-DDQNGYGREREYGYGYRDDDRSSR 219 (414)
Q Consensus 165 ~g~~~~-~~s~~s~ggy~~~~d~~~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~~~~ 219 (414)
.++.+. .++.+++++|+++++.+-..... +. .++..++.+.++. |.......+
T Consensus 161 ~~~~~~~~~~~~s~~s~~d~~~~~~~~~~s~e~~~~r~~~~~~~e~~--~~~~~~~Sr 216 (336)
T KOG2056|consen 161 PGSISNKSNSERSSASYQDDDDSAGPPRTSEEDDQGRPSTSNEEEYE--LQSALSLSR 216 (336)
T ss_pred CCccccccccccCccccccchhhccCCccccchhhcccccccccchh--hhhhhhhhh
Confidence 766554 56777889999887543211111 11 3455666666655 555555433
No 2
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=4.1e-47 Score=332.28 Aligned_cols=123 Identities=62% Similarity=1.061 Sum_probs=121.0
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 25 ~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
++|++|+||||||+|||++++|++||++||++++|.+||++|||||.+++++||||||||+||||||+|||++||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHH
Q 015054 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERII 147 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~Lr 147 (414)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999984
No 3
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-45 Score=360.05 Aligned_cols=181 Identities=32% Similarity=0.679 Sum_probs=165.4
Q ss_pred hhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC--hhhHHHHHHHHHHHhcc-CCCCchhhhH
Q 015054 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN--YHEYQMIIGVIWKRIND-TGKNWRHVYK 82 (414)
Q Consensus 6 ~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n--~~~y~~Im~vLwKRL~~-~gk~WR~VyK 82 (414)
...||+|.++++++||||+++|.+||||||+|+|||++.+|.|||++||. +++|.++|.+||.|+.+ ..++||+|||
T Consensus 4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK 83 (499)
T KOG2057|consen 4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK 83 (499)
T ss_pred hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999998 89999999999999765 4569999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhhh
Q 015054 83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKFR 161 (414)
Q Consensus 83 aL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~-R~K~~ 161 (414)
+|+||.|||+|||||||.++|+|+|.|+.|++|+|+|++|+|+|++||+|+|+||++.+|+++|++||+||++. ++||+
T Consensus 84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~ 163 (499)
T KOG2057|consen 84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR 163 (499)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccCCCCcCCCCC-----CCCCCCCCCCCc
Q 015054 162 NTTAGGMYRPGSY-----SSSGGNGDRYDN 186 (414)
Q Consensus 162 g~~~g~~~~~~s~-----~s~ggy~~~~d~ 186 (414)
|+....|.+++++ .+-.||...||.
T Consensus 164 G~~qd~mggf~~SekydpepkS~wDeeWDK 193 (499)
T KOG2057|consen 164 GFDQDDMGGFGSSEKYDPEPKSGWDEEWDK 193 (499)
T ss_pred ccchhhccccccccccCCCccccccccccc
Confidence 9987655554432 234567766653
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=1.8e-41 Score=293.85 Aligned_cols=124 Identities=56% Similarity=0.984 Sum_probs=114.4
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
||++|++|+||||+|+|||++++|+|||++||++.+|.+||++||+|| ..++++||+|||||+||+|||+||+++||.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred HHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHH
Q 015054 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146 (414)
Q Consensus 102 ~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~L 146 (414)
+|+|+..|+.|++|+|+|++|+|+|.+||++|++|++||+|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=2.3e-33 Score=243.52 Aligned_cols=126 Identities=46% Similarity=0.770 Sum_probs=122.5
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
+++|++|++|||+|+|||++++|.+|+++||++ ..|..||.+||+||.+++ +||+|||||+||+|||+||+++||.|+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999999999 899999999999999887 899999999999999999999999999
Q ss_pred HhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHH
Q 015054 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (414)
Q Consensus 103 r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR 150 (414)
+.|...|..|.+|+++|++|.|+|..||++|+.|+++|.|.+.|+++|
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999886
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.93 E-value=4.2e-26 Score=199.85 Aligned_cols=114 Identities=24% Similarity=0.360 Sum_probs=107.9
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhh-hHHHHHHHHHHHcCChhhHHHHHhh
Q 015054 28 QKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHV-YKALTVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 28 ~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~V-yKaL~LLEYLLkNGServV~e~r~h 105 (414)
.+|+.||+||+|+|++.+|+|||++||+. ..|.+||++|.|||++++ +|| +|||+||.||+.+|++.|+.|+|.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 47899999999999999999999999985 889999999999999875 888 9999999999999999999999999
Q ss_pred HHHhhhhhcccc-cCC-CCCcccchHHHHHHHHHHHhcCHH
Q 015054 106 SYQISTLSDFQY-IDS-SGRDQGSNVRKKSQSLVALVNDKE 144 (414)
Q Consensus 106 ~~~Ir~L~~Fqy-~D~-~GkD~G~~VR~KAK~Il~LL~Dee 144 (414)
+++|++|++|++ .|+ +|.+.+..||..|+++++||...+
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 999999999999 787 999999999999999999997653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.88 E-value=3e-22 Score=170.54 Aligned_cols=114 Identities=34% Similarity=0.439 Sum_probs=104.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
.|++|.+||+++.|||+..+|.+|++++++. ..+.+||+.|||||.+. +|+++||||+|||||++||+++|..++++
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3789999999999999999999999999987 56899999999999876 99999999999999999999999999999
Q ss_pred hHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcC
Q 015054 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~D 142 (414)
+.++++.| .|.+.+..|.+++.+||+++++|+++..|
T Consensus 79 ~~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 79 NDFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred hHHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 99877655 56888778999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.77 E-value=2e-18 Score=148.57 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=102.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
+|+.|+.||++|.|+|..+.|.+|..+|++ ...+..||..|++||.+ ++|+++||||+||.+||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 478999999999999999999999999999 78999999999999988 799999999999999999999999999999
Q ss_pred hHHHhhhhhcccccCC-CCCcccchHHHHHHHHHHHh
Q 015054 105 HSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~-~GkD~G~~VR~KAK~Il~LL 140 (414)
|...| .|..|.+.+. .|.|++..||..|+-|.+-|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 96666 6668888775 68899999999999887655
No 9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=1.5e-15 Score=163.26 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcC--------ChhhHHHHHhhHHHhhhhhc
Q 015054 43 GTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG--------SERVIDDIREHSYQISTLSD 114 (414)
Q Consensus 43 ~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNG--------ServV~e~r~h~~~Ir~L~~ 114 (414)
-+++..+-..++++++..+++++||.-+.+++.+-. -|.||.|||.-- --.+|+++-+.|.+=+
T Consensus 368 ~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~y----fLSILQhlllirnDy~~rpqYykLIEecISqIvlHr---- 439 (1102)
T KOG1924|consen 368 EELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPY----FLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHR---- 439 (1102)
T ss_pred HHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccch----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhc----
Confidence 345556666788899999999999999988754321 134444443321 1122332222221111
Q ss_pred ccccCCCCCcccchHHH----HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcc
Q 015054 115 FQYIDSSGRDQGSNVRK----KSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (414)
Q Consensus 115 Fqy~D~~GkD~G~~VR~----KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~ 163 (414)
.|.|....-|+ -...||+-+.|.+.+++-+++|..+.+||-..
T Consensus 440 ------~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke 486 (1102)
T KOG1924|consen 440 ------TGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKE 486 (1102)
T ss_pred ------CCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332222222 45678999999999999999999999998554
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=2.2e-11 Score=131.83 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=64.9
Q ss_pred hhhhhHHHHHHHHhccccc---CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh------hhHHHHHHHHHHHhc-c
Q 015054 3 KAFDQTFRDIKRGVNKKVL---KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY------HEYQMIIGVIWKRIN-D 72 (414)
Q Consensus 3 kv~~q~~~dlkr~vkn~v~---~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~------~~y~~Im~vLwKRL~-~ 72 (414)
|+....||=||.-+||++- =+...+-++.-|-.-|+--|- +|-+++.+.+.. .-+.+++..|..+-. +
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pn--mm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~ 284 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPN--MMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAK 284 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCcc--HHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhc
Confidence 4445566667777776331 011222233333333444333 677776665432 234444444433322 1
Q ss_pred CCCCchhhhHHH--------HHHHHHHHcCChhhHHH--HHhhHH-------HhhhhhcccccCCCCCcccchHH--HHH
Q 015054 73 TGKNWRHVYKAL--------TVLEYLVAHGSERVIDD--IREHSY-------QISTLSDFQYIDSSGRDQGSNVR--KKS 133 (414)
Q Consensus 73 ~gk~WR~VyKaL--------~LLEYLLkNGServV~e--~r~h~~-------~Ir~L~~Fqy~D~~GkD~G~~VR--~KA 133 (414)
.-..+|-|.-+| .|+-+.++|+-..-+.+ ||-|+. +-+.|.+|+.++.++.|+..+|- ++-
T Consensus 285 ~veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~~e 364 (1102)
T KOG1924|consen 285 PVERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEHKE 364 (1102)
T ss_pred chhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhhhh
Confidence 222344443332 22223344443322222 233331 22456677777666667666662 444
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 015054 134 QSLVALVNDKERIIEVRQK 152 (414)
Q Consensus 134 K~Il~LL~Dee~LreeR~k 152 (414)
.++.+|. .+|...|..
T Consensus 365 ~Dl~el~---~rledir~e 380 (1102)
T KOG1924|consen 365 DDLEELS---GRLEDIRAE 380 (1102)
T ss_pred hhHHHHH---hHHHhhhhh
Confidence 5555554 344444433
No 11
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.76 E-value=2.3e-08 Score=96.78 Aligned_cols=112 Identities=23% Similarity=0.335 Sum_probs=79.9
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r 103 (414)
+++|+-|..||+.+...|..+.+..|..+|++......|+..|.+||... ++|.+++|||+||..||+-|++.|+.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 56799999999999999999999999999999667889999999999764 47999999999999999999999999998
Q ss_pred hhHHHhhhhhcccccC---CCCCcccchHHHHHHHH
Q 015054 104 EHSYQISTLSDFQYID---SSGRDQGSNVRKKSQSL 136 (414)
Q Consensus 104 ~h~~~Ir~L~~Fqy~D---~~GkD~G~~VR~KAK~I 136 (414)
.+...+..+.++.-.| ..+.+++.-||.=++-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL 116 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYL 116 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHH
Confidence 8776676666654322 23445666666655444
No 12
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=8.2e-07 Score=94.09 Aligned_cols=109 Identities=27% Similarity=0.390 Sum_probs=89.2
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHH
Q 015054 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (414)
Q Consensus 22 ~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~ 100 (414)
.++.+|+-|..||+.|..+|..+.|..|-.+|-+. ....-++..|-+||+.+ ++|.++||||+||.+||++|.+.|..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 46899999999999999999999999999999766 67889999999999877 58999999999999999999999999
Q ss_pred HHHhhHHHhhhhhcccccCCC---CCcccchHHHHHH
Q 015054 101 DIREHSYQISTLSDFQYIDSS---GRDQGSNVRKKSQ 134 (414)
Q Consensus 101 e~r~h~~~Ir~L~~Fqy~D~~---GkD~G~~VR~KAK 134 (414)
++..+-.+| .|.+| .|.. +-|+..-||.=++
T Consensus 99 ~l~~~~~~l-~lS~F--~d~s~~~~~d~safVR~Ya~ 132 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDF--RDKSSSLTWDMSAFVRTYAL 132 (491)
T ss_pred HHHhccccc-chhhh--hcccccccchhhHHHHHHHH
Confidence 887665222 33444 3332 5566667774443
No 13
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.27 E-value=7.7e-06 Score=72.67 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=80.1
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
.++++.+|..||+...-.+.-..+-+|++.-.. .....+++..|.|||.. .+-..++-||+|||+|++||...|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478899999999988777777888889988644 56679999999999988 478899999999999999999999888
Q ss_pred HHhh--HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHh
Q 015054 102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 102 ~r~h--~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
+-.. +..|..|-.-.+.+. ...||+|+.++|.-.
T Consensus 81 v~~~~fl~~l~~l~~~~~~~~-----~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKKTDP-----ETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTTTHH-----HSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCCCCc-----hhHHHHHHHHHHHHH
Confidence 7433 333333322222211 112888887766543
No 14
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.96 E-value=9e-05 Score=65.67 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhh
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h 105 (414)
|.+|.+||+...-.+.-..+-+|++.-.+ ...-.+.+..|.|||... +-+.++.||+|||.|++|+...|..++.+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~--n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNK--NPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 78899999987777777888888888644 344689999999999964 678899999999999999999998888654
Q ss_pred HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHh
Q 015054 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 106 ~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
-+ +..|... +.. ......|++|+-.++.-.
T Consensus 80 ~f-l~~L~~l--~~~--~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 80 EF-LNELVKL--IKP--KYPLPLVKKRILELIQEW 109 (133)
T ss_pred HH-HHHHHHH--HcC--CCCcHHHHHHHHHHHHHH
Confidence 33 3344322 211 111122888877766544
No 15
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.94 E-value=0.00012 Score=66.25 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhh
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h 105 (414)
|.+|..||+...-.+.=.++-+|++.-.+ ...-...|..|.|||... +-+.++.||+|||-|++|+-..|-.++-+.
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHK--DPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 78999999977666666788888887643 455789999999999864 678899999999999999999999888543
Q ss_pred HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 106 ~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
..+..|..+ +... ....|++|+..|+....
T Consensus 80 -~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 -DFTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 233444433 2211 44688888888877654
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.89 E-value=0.00017 Score=64.87 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=78.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHH
Q 015054 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (414)
Q Consensus 25 ~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r 103 (414)
+++.+|..||+...-.+.=.+.-+|++.-.+. ..-...|..|.|||+ .+++-+.++-||+|||-|++||-.+|-.++-
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 35789999999766666666777887776443 356899999999996 3567888999999999999999999998885
Q ss_pred hhHHHhhh-hhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 104 EHSYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 104 ~h~~~Ir~-L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
..- .+.+ |..+ +..+ .+....|++|+..|++-..
T Consensus 80 sk~-Fl~e~L~~~--i~~~-~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 KKD-FIKDVLVKL--INPK-NNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHH-hhhHHHHHH--Hccc-CCCcHHHHHHHHHHHHHHH
Confidence 432 2322 3322 1111 1233468877777765543
No 17
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.87 E-value=0.00018 Score=63.58 Aligned_cols=108 Identities=20% Similarity=0.163 Sum_probs=79.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhh
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h 105 (414)
+.+|.+||+...-.+.-.++.+|++.-.+. ..-.+.+..|.|||... +-...+.||+|||.|++||...|..++-+.
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 568999999766666667788888876543 45789999999999875 678899999999999999999998888764
Q ss_pred HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHh
Q 015054 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 106 ~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
-++.+ |..+ .... ......|+.|+-+++.-.
T Consensus 80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHH
Confidence 44333 4333 1111 124567888887776554
No 18
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.84 E-value=0.00021 Score=64.28 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=82.2
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
.++.+.+|.+||+...-.+.-.++-+|++.-.. ...-.+.+..|.|||.. ++-+.++-||+|||.|++|+-..|..+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 367899999999977777777788888887643 34568999999999987 478899999999999999999888888
Q ss_pred HHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 102 ~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+-+.- .+..|... +.. ..-..|++|+-.|+.-..
T Consensus 80 vas~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASRE-FMDELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHH-HHHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 75432 23333332 111 344678888877766543
No 19
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.78 E-value=0.00037 Score=62.76 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=80.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
+|.+|..||+.-.-.+.-.++-+|++.-.+ ...-...+..|.|||+.. +-+.++-||+|||.|++|+-.+|-.++-.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas 79 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGK 79 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 688999999976666666778888887643 334678999999999865 57789999999999999999999888754
Q ss_pred hHH---HhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 105 HSY---QISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 105 h~~---~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
.-+ +++.+.. +| .|...-..|++|+-.|+..-.
T Consensus 80 ~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 80 FRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 322 2222211 11 244456789998877776654
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0024 Score=67.88 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
+..+|..||+..--+|.=.+--+||++--. .....+++..|.|||+.+.. +..|=||+|||=|++|+-+.|=..+-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 468899999987777777778889988743 34467999999999997754 778889999999999998888766644
Q ss_pred hHHHhhhhhcccccCCCCCcccchHHHHHHHHHHH
Q 015054 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL 139 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~L 139 (414)
--++=+.++.|++.. ....||+|+-.||+.
T Consensus 80 k~fL~emVk~~k~~~-----~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKP-----RDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccccCC-----cchhHHHHHHHHHHH
Confidence 333334555554431 567899887666554
No 21
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.16 E-value=0.0011 Score=70.34 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=12.7
Q ss_pred ccchH--HHHHHHHHHHhcCHHHHH
Q 015054 125 QGSNV--RKKSQSLVALVNDKERII 147 (414)
Q Consensus 125 ~G~~V--R~KAK~Il~LL~Dee~Lr 147 (414)
.|++. -+-|++..+.|+|...-+
T Consensus 118 aGLnF~~E~EA~~F~k~V~~r~~~~ 142 (569)
T KOG3671|consen 118 AGLNFASEEEAQKFRKKVQDRICHR 142 (569)
T ss_pred eeecccCHHHHHHHHHHHHHHhhhh
Confidence 34444 456667777765544433
No 22
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=96.66 E-value=0.016 Score=60.45 Aligned_cols=85 Identities=26% Similarity=0.354 Sum_probs=65.0
Q ss_pred CCchHHHHHHHhhc----CCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCCh
Q 015054 22 KVPGIEQKVLDATS----NEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE 96 (414)
Q Consensus 22 ~~s~~E~kVreATs----nD~WGPt~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSe 96 (414)
..+++|..|..||+ +|+|+ ++-+||+.- -+.+-=+..|+.|.|||+.. .-.+|+-||+||.=|+.|+-.
T Consensus 5 ~~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~ 78 (462)
T KOG2199|consen 5 SANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGK 78 (462)
T ss_pred CcchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcch
Confidence 35789999999998 47784 455566553 44455678899999999876 456899999999999999999
Q ss_pred hhHHHHHh--hHHHhhhh
Q 015054 97 RVIDDIRE--HSYQISTL 112 (414)
Q Consensus 97 rvV~e~r~--h~~~Ir~L 112 (414)
+|..++.. ....|+.|
T Consensus 79 ~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 79 RFRLEVSSRDFTTELRAL 96 (462)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 98888843 34444444
No 23
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.98 E-value=0.018 Score=64.05 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q 015054 82 KALTVLEYLVA 92 (414)
Q Consensus 82 KaL~LLEYLLk 92 (414)
++|....+.+.
T Consensus 93 a~lQf~~ifv~ 103 (830)
T KOG1923|consen 93 AKLQFYDVFVG 103 (830)
T ss_pred HHHHHHHHHhc
Confidence 67777766665
No 24
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.94 E-value=0.02 Score=61.19 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=6.1
Q ss_pred cCHHHHHHHHHHH
Q 015054 141 NDKERIIEVRQKA 153 (414)
Q Consensus 141 ~Dee~LreeR~kA 153 (414)
.|+++-++-|++.
T Consensus 123 ~~E~EA~~F~k~V 135 (569)
T KOG3671|consen 123 ASEEEAQKFRKKV 135 (569)
T ss_pred cCHHHHHHHHHHH
Confidence 3455544444443
No 25
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.90 E-value=0.044 Score=61.05 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=6.5
Q ss_pred CCCcccccccc
Q 015054 398 VQAPHWTTCLN 408 (414)
Q Consensus 398 ~k~~hW~k~~~ 408 (414)
+..+.|..+.+
T Consensus 371 ~p~lnW~alKP 381 (830)
T KOG1923|consen 371 SPSLNWLALKP 381 (830)
T ss_pred CCCccccccCc
Confidence 45667766543
No 26
>PHA03247 large tegument protein UL36; Provisional
Probab=95.45 E-value=0.037 Score=68.19 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=5.7
Q ss_pred HHhhcCC--CCC
Q 015054 31 LDATSNE--PWG 40 (414)
Q Consensus 31 reATsnD--~WG 40 (414)
++|.|.| .||
T Consensus 2348 ~~aVSsD~~SWg 2359 (3151)
T PHA03247 2348 REVVSSDVETWA 2359 (3151)
T ss_pred HHHhcccHHHHH
Confidence 4566543 576
No 27
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=95.12 E-value=0.11 Score=58.42 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=6.5
Q ss_pred CCCCcccccccc
Q 015054 397 SVQAPHWTTCLN 408 (414)
Q Consensus 397 ~~k~~hW~k~~~ 408 (414)
.++++||+|+-.
T Consensus 395 ~lk~l~wdk~~~ 406 (833)
T KOG1922|consen 395 KLKPLHWDKTRG 406 (833)
T ss_pred CCCCccccccCC
Confidence 455666665543
No 28
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.84 E-value=0.044 Score=65.95 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=5.5
Q ss_pred CCCchHHHhhh
Q 015054 288 APPSYEEAVSE 298 (414)
Q Consensus 288 apps~~~a~s~ 298 (414)
..-.||=-|.+
T Consensus 1644 vAGAYeY~L~k 1654 (2039)
T PRK15319 1644 NAGLYTYRLYW 1654 (2039)
T ss_pred ecccEEEEEEc
Confidence 34455555544
No 29
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.79 E-value=0.04 Score=66.28 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.8
Q ss_pred cccccc
Q 015054 402 HWTTCL 407 (414)
Q Consensus 402 hW~k~~ 407 (414)
-|-.++
T Consensus 1764 ~W~Ri~ 1769 (2039)
T PRK15319 1764 VWARFK 1769 (2039)
T ss_pred eEEEEe
Confidence 354444
No 30
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=94.65 E-value=0.053 Score=58.34 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015054 325 LPPPARLGASSPPAAPGAASPPPAPGSSSP 354 (414)
Q Consensus 325 p~p~~~~~~~~pp~~~~~~~ppp~~~~~~~ 354 (414)
|-++-..++.|||||-++.|||||++.+-|
T Consensus 240 P~~~~L~~GvPPPPP~G~~PPPPP~~~~L~ 269 (817)
T KOG1925|consen 240 PTRDFLLSGVPPPPPKGPFPPPPPLAAPLP 269 (817)
T ss_pred CCchhhhcCCCCCCCCCCCCCCCCCcccCc
Confidence 334445566677776666666665554433
No 31
>PHA01732 proline-rich protein
Probab=94.46 E-value=0.043 Score=46.35 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=7.1
Q ss_pred CCCCccccCCCCccCC
Q 015054 371 QATNTFDNFTSANQEA 386 (414)
Q Consensus 371 ~st~~f~~~ps~~~~~ 386 (414)
|+..+...+-.+++++
T Consensus 59 q~a~gTasLrIpkqtg 74 (94)
T PHA01732 59 QKAGGTASLRIPKQSG 74 (94)
T ss_pred hhccCcceeEeecccc
Confidence 3444444444444443
No 32
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=93.98 E-value=0.59 Score=49.34 Aligned_cols=6 Identities=33% Similarity=0.351 Sum_probs=2.6
Q ss_pred CCCCcc
Q 015054 200 GYGRER 205 (414)
Q Consensus 200 ~~g~~~ 205 (414)
.||..+
T Consensus 198 ~~g~k~ 203 (487)
T KOG4672|consen 198 PAGIKR 203 (487)
T ss_pred cccccc
Confidence 344443
No 33
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.27 E-value=0.057 Score=62.53 Aligned_cols=13 Identities=46% Similarity=1.007 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCCC
Q 015054 319 PGPPGVLPPPARL 331 (414)
Q Consensus 319 p~ppp~p~p~~~~ 331 (414)
|+-||||||||+.
T Consensus 6 pg~ppppppppg~ 18 (2365)
T COG5178 6 PGNPPPPPPPPGF 18 (2365)
T ss_pred CCCCcccccCCCC
Confidence 3434444444433
No 34
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=92.07 E-value=0.78 Score=51.75 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=13.3
Q ss_pred CCCCccCCCCCCCCcccccccc
Q 015054 387 VAPDEFDPRGSVQAPHWTTCLN 408 (414)
Q Consensus 387 ~~~dk~dPr~~~k~~hW~k~~~ 408 (414)
--||+.-+. ......|.+|..
T Consensus 399 l~wdk~~~~-~~~~~~w~~~~~ 419 (833)
T KOG1922|consen 399 LHWDKTRGS-SKRSMVWSEVDS 419 (833)
T ss_pred ccccccCCC-CccCCCCCcccc
Confidence 337887553 347788887753
No 35
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=91.50 E-value=0.61 Score=49.45 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.8
Q ss_pred CCCchhhhHHHHHHHHHH
Q 015054 74 GKNWRHVYKALTVLEYLV 91 (414)
Q Consensus 74 gk~WR~VyKaL~LLEYLL 91 (414)
+-+-|..||+-+|.+--|
T Consensus 94 dinmrKAFkSStvqDQqi 111 (518)
T KOG1830|consen 94 DINMRKAFKSSTVQDQQI 111 (518)
T ss_pred hhHHHhhhhhhhhhhhhh
Confidence 467888999988887544
No 36
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=90.52 E-value=0.45 Score=51.53 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=8.4
Q ss_pred CCCCcccccccc
Q 015054 397 SVQAPHWTTCLN 408 (414)
Q Consensus 397 ~~k~~hW~k~~~ 408 (414)
+.++++|..|-+
T Consensus 304 r~~~t~W~s~D~ 315 (817)
T KOG1925|consen 304 RPCATLWASLDP 315 (817)
T ss_pred cccchhhhccCc
Confidence 357889987643
No 37
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.78 E-value=0.8 Score=52.20 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHH
Q 015054 28 QKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSY 107 (414)
Q Consensus 28 ~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~ 107 (414)
.-|+.|+|.+...|-.++..-|.-.|++...-...+.+| |||--.. +=...+|.+.||.=||+-|.+.++.+.++|..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~FWt~i-k~~PL~~-~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIFWTTI-KRQPLEN-HEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccchhHHHHh-hcccccc-chHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 467899999999999999999999999876544333333 5543321 34567799999999999999999999999999
Q ss_pred HhhhhhcccccCCCCCcccchHHHHHHHHHH
Q 015054 108 QISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138 (414)
Q Consensus 108 ~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~ 138 (414)
-|+.|.++--.- -.+.|..||.=+|-|+.
T Consensus 87 ~i~~l~r~w~~l--s~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 87 WITQLGRMWGHL--SDGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHhccc--cccchHHHHHHHHHHHH
Confidence 999998873221 15788888877765543
No 38
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=89.18 E-value=8.2 Score=41.10 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=4.9
Q ss_pred HHHHHHHHhcCh
Q 015054 45 LLADIAQATRNY 56 (414)
Q Consensus 45 ~L~eIA~~T~n~ 56 (414)
+|..|-.+-|+.
T Consensus 55 ~m~kldem~~~p 66 (487)
T KOG4672|consen 55 KMEKLDEMEYNP 66 (487)
T ss_pred HHHhhcccccCc
Confidence 333444444443
No 39
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=1.5 Score=46.90 Aligned_cols=75 Identities=20% Similarity=0.404 Sum_probs=45.3
Q ss_pred chHHHHHHHhhcC----CCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhh
Q 015054 24 PGIEQKVLDATSN----EPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERV 98 (414)
Q Consensus 24 s~~E~kVreATsn----D~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServ 98 (414)
-.+|..|..||+- +.|- .++-|++.-+ +.+.=..-+..|-..|. +..+|-.+ -||++||||++||-++|
T Consensus 7 ~sle~wlnrATdp~~~eedw~----ai~~fceqinkdp~gp~lAv~LlaHKiq-SPqe~EAl-~altvLe~cmkncGekf 80 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWK----AIDGFCEQINKDPEGPLLAVRLLAHKIQ-SPQEWEAL-QALTVLEYCMKNCGEKF 80 (594)
T ss_pred ccHHHHHHhccCccchHHHHH----HHHHHHHHHhcCCCCchhHHHHHHhhcC-ChhHHHHH-HHHHHHHHHHHhhhHHH
Confidence 4678888888862 3452 2333333332 12222223333444443 34688754 58999999999999998
Q ss_pred HHHHHh
Q 015054 99 IDDIRE 104 (414)
Q Consensus 99 V~e~r~ 104 (414)
-+++-.
T Consensus 81 H~evgk 86 (594)
T KOG1086|consen 81 HEEVGK 86 (594)
T ss_pred HHHHHH
Confidence 877644
No 40
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=88.38 E-value=5.3 Score=33.87 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=65.2
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhh
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h 105 (414)
+..+++-|.+. .+...++.|+.+. .+......|+++|.++|..... .+.+=.|-|++=+++|.-......+...
T Consensus 5 ~~~l~~L~~~~---~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~~ 79 (114)
T cd03562 5 NALLEKLTFNK---NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSEF 79 (114)
T ss_pred HHHHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHHH
Confidence 44455555555 4455555565555 3456788999999999976533 6788899999999999777666665554
Q ss_pred H-HHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 106 S-YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 106 ~-~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+ .++. .-|+ .....+|+|..+|+++=.
T Consensus 80 ~~~~f~--~~~~-------~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 80 LVPLFL--DAYE-------KVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHH--HHHH-------hCCHHHHHHHHHHHHHcc
Confidence 2 1111 1122 123477888888877643
No 41
>PRK15313 autotransport protein MisL; Provisional
Probab=86.90 E-value=1.8 Score=49.94 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=6.3
Q ss_pred CCCCCchHHHhhh
Q 015054 286 IGAPPSYEEAVSE 298 (414)
Q Consensus 286 ~~apps~~~a~s~ 298 (414)
......|+=-|.+
T Consensus 535 ~vvAGAY~Y~L~k 547 (955)
T PRK15313 535 RIVAGAYDYNVVQ 547 (955)
T ss_pred ceEeeeEEEEEEe
Confidence 3344455555544
No 42
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.85 E-value=2.6 Score=44.05 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHhcC
Q 015054 126 GSNVRKKSQSLVALVND 142 (414)
Q Consensus 126 G~~VR~KAK~Il~LL~D 142 (414)
+++-...+|++++||--
T Consensus 130 ~~~SdAa~Kq~MeiLP~ 146 (498)
T KOG4849|consen 130 VLNSDAAVKQTMEILPT 146 (498)
T ss_pred EecchHHHHHHHHhccc
Confidence 34446778888888743
No 43
>PRK15313 autotransport protein MisL; Provisional
Probab=84.99 E-value=1.8 Score=49.98 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=3.3
Q ss_pred ccccccc
Q 015054 401 PHWTTCL 407 (414)
Q Consensus 401 ~hW~k~~ 407 (414)
.-|-.++
T Consensus 678 s~WlR~~ 684 (955)
T PRK15313 678 SLWMRNV 684 (955)
T ss_pred ceEEEee
Confidence 3455443
No 44
>PRK09752 adhesin; Provisional
Probab=84.76 E-value=0.93 Score=53.28 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.8
Q ss_pred CCchHHHhhh
Q 015054 289 PPSYEEAVSE 298 (414)
Q Consensus 289 pps~~~a~s~ 298 (414)
...|+=-|.+
T Consensus 897 AGAYeY~L~k 906 (1250)
T PRK09752 897 MGAYDYTLVE 906 (1250)
T ss_pred eeeEEEEEEe
Confidence 3445555544
No 45
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=84.66 E-value=9 Score=32.60 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHH-Hhhhhhccccc
Q 015054 41 PHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSY-QISTLSDFQYI 118 (414)
Q Consensus 41 Pt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~-~Ir~L~~Fqy~ 118 (414)
++...+..++...- +.+....|+++|.+.+.....+ +.+-.|-|++-+|+|+.......+++... .|.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 55566666666654 4556789999999999765443 56678999999999987654444433221 1111 12222
Q ss_pred CCCCCcccchHHHHHHHHHHHhcC
Q 015054 119 DSSGRDQGSNVRKKSQSLVALVND 142 (414)
Q Consensus 119 D~~GkD~G~~VR~KAK~Il~LL~D 142 (414)
..... ..+|++..+|+++=.+
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 4788999999888543
No 46
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=83.49 E-value=3.9 Score=46.37 Aligned_cols=8 Identities=25% Similarity=0.846 Sum_probs=4.3
Q ss_pred cCCCCCCC
Q 015054 35 SNEPWGPH 42 (414)
Q Consensus 35 snD~WGPt 42 (414)
++|.+||.
T Consensus 80 ~kd~F~pr 87 (894)
T KOG0132|consen 80 EKDVFGPR 87 (894)
T ss_pred cccccCCc
Confidence 45555553
No 47
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=80.15 E-value=6.4 Score=42.06 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=3.2
Q ss_pred hcCHHHHH
Q 015054 140 VNDKERII 147 (414)
Q Consensus 140 L~Dee~Lr 147 (414)
|+|-+..+
T Consensus 166 Lqdted~~ 173 (518)
T KOG1830|consen 166 LQDTEDKM 173 (518)
T ss_pred HHHHHHHH
Confidence 44444433
No 48
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.39 E-value=1.5 Score=49.49 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=59.1
Q ss_pred chHHHHHH--HhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 24 PGIEQKVL--DATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 24 s~~E~kVr--eATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
+..|+.|. |||+.+.|||+ .+.+|+...-..+|+.|..|+.+++++ ||=|++---++||+-
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E----------IE~lcn~hyQdFids 78 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE----------IEKLCNFHYQDFIDS 78 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH----------HHHHHHHHhhhHHHH
Confidence 45565554 88999999997 556677777889999999999887765 444555445555555
Q ss_pred HHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 102 ~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+.+-+.+...+++.+- .=.|....+++-+++|+.-++
T Consensus 79 IdEL~~Vr~daq~Lks---~vsd~N~rLQ~~g~eLiv~~e 115 (800)
T KOG2176|consen 79 IDELLKVRGDAQKLKS---QVSDTNRRLQESGKELIVKKE 115 (800)
T ss_pred HHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHH
Confidence 4443333333333211 011233455666666665553
No 49
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=79.02 E-value=8.1 Score=45.00 Aligned_cols=15 Identities=53% Similarity=0.800 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCC
Q 015054 170 RPGSYSSSGGNGDRY 184 (414)
Q Consensus 170 ~~~s~~s~ggy~~~~ 184 (414)
++|+..+.||||+.|
T Consensus 1184 RGgssysgGGYGggy 1198 (1282)
T KOG0921|consen 1184 RGGSSYSGGGYGGGY 1198 (1282)
T ss_pred cCCCCCCCCCcCCCC
Confidence 334555788888877
No 50
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=78.05 E-value=11 Score=44.04 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=7.2
Q ss_pred CCCCHHHHHHHHHHhc
Q 015054 39 WGPHGTLLADIAQATR 54 (414)
Q Consensus 39 WGPt~s~L~eIA~~T~ 54 (414)
|+.+-.++..|-++.|
T Consensus 951 ~~a~~ql~d~L~q~~f 966 (1282)
T KOG0921|consen 951 DGARRQLIDVLRQCSF 966 (1282)
T ss_pred hhhHHHHHHHHHhccC
Confidence 4444444444444443
No 51
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=77.64 E-value=5.1 Score=41.96 Aligned_cols=11 Identities=0% Similarity=0.283 Sum_probs=4.7
Q ss_pred CCccccccccc
Q 015054 399 QAPHWTTCLNK 409 (414)
Q Consensus 399 k~~hW~k~~~~ 409 (414)
+---+|.|.++
T Consensus 358 SeAEFEdiM~R 368 (498)
T KOG4849|consen 358 SEAEFEDIMTR 368 (498)
T ss_pred hHHHHHHHHhh
Confidence 33344444443
No 52
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=77.57 E-value=1.8 Score=42.93 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.4
Q ss_pred CCcccc
Q 015054 122 GRDQGS 127 (414)
Q Consensus 122 GkD~G~ 127 (414)
+|++|.
T Consensus 8 ~K~yGs 13 (253)
T PF05308_consen 8 NKPYGS 13 (253)
T ss_pred CCCCcc
Confidence 344443
No 53
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=77.55 E-value=0.73 Score=46.99 Aligned_cols=33 Identities=9% Similarity=0.438 Sum_probs=13.9
Q ss_pred HHHHHHHHHc-CChhhHHHHHhhH--HHhhhhhccc
Q 015054 84 LTVLEYLVAH-GSERVIDDIREHS--YQISTLSDFQ 116 (414)
Q Consensus 84 L~LLEYLLkN-GServV~e~r~h~--~~Ir~L~~Fq 116 (414)
+.+|-++... -+-.+|.|+++-. +.=|.|++|+
T Consensus 140 i~aLgWV~v~p~P~~~V~e~~dsA~Fy~NRVLke~K 175 (312)
T PF01213_consen 140 IPALGWVAVEPKPAPYVKEMKDSAQFYTNRVLKEYK 175 (312)
T ss_dssp GGGGGGGG--S-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hheeeeeeeCCchHhHHHHHHHHHHHHHhHHHHHhh
Confidence 3344444333 2334555555543 2234555553
No 54
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.93 E-value=9.1 Score=42.71 Aligned_cols=107 Identities=20% Similarity=0.112 Sum_probs=74.8
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
|..+.++..||+....-.+-...-+|+.+.... ..+..-|..|.+|++ ..+-+...=+|.|+++.++||---|..++
T Consensus 7 ~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 7 SAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred hHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 445677889999877666667777888877643 346677888888887 45778888899999999999886777766
Q ss_pred --HhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHH
Q 015054 103 --REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL 139 (414)
Q Consensus 103 --r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~L 139 (414)
|+.+..|+.|-.=+- .-..|+++...|+.-
T Consensus 85 ~tre~m~~~~~~l~~~~-------~~e~v~~~~l~~~q~ 116 (634)
T KOG1818|consen 85 ATREFMDLLKSLLESQR-------IHEEVKNKILELIQN 116 (634)
T ss_pred HHHHHHHHHHhhhcccc-------ccchHHHHHHHHHHH
Confidence 566666655433221 334666666665544
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=75.18 E-value=18 Score=30.70 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHH
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSL 136 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~I 136 (414)
+.+..|+..|.+.+.+. .||.=|=|.--|--|++..-..++..|-+-...|-.| . .|...+||.-|+-|
T Consensus 23 ~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-----~----~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-----S----ADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----cCCchhHHHHHHHH
Confidence 45788999999999887 7999899998888888888777766444433322221 1 35667999999999
Q ss_pred HHHhcC
Q 015054 137 VALVND 142 (414)
Q Consensus 137 l~LL~D 142 (414)
-.||.|
T Consensus 92 d~llkd 97 (97)
T PF12755_consen 92 DRLLKD 97 (97)
T ss_pred HHHhcC
Confidence 998876
No 56
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=75.03 E-value=64 Score=30.35 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=55.0
Q ss_pred ChhhhhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhH-HHHHHHHHHHhc---cCCCC
Q 015054 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRIN---DTGKN 76 (414)
Q Consensus 1 ~~kv~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y-~~Im~vLwKRL~---~~gk~ 76 (414)
|.+.|+.++..+++.+.++...+-.+=.++.+|..+.+ .....+|.+.-...+.+ .+|.+.+.+-+. ...+.
T Consensus 10 ~~~~~~~~l~~~~~el~~M~~~v~~ml~~~~~al~~~d----~~~~~~i~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d 85 (236)
T PRK11115 10 ISGQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQD----AELAKRVIEGDHKVNMMEVAIDEACVRIIAKRQPTASD 85 (236)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 45678999999999988865443333344555554332 45666776666555543 466666666652 23457
Q ss_pred chhhhHHHHHHHHHHH
Q 015054 77 WRHVYKALTVLEYLVA 92 (414)
Q Consensus 77 WR~VyKaL~LLEYLLk 92 (414)
++.+.-.+.++.+|=+
T Consensus 86 ~~~~~~~~~i~~~lER 101 (236)
T PRK11115 86 LRLVMAIIKTIADLER 101 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8878777777766633
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=72.65 E-value=10 Score=43.21 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 015054 46 LADIAQA 52 (414)
Q Consensus 46 L~eIA~~ 52 (414)
++-|.+.
T Consensus 66 IDSIVRq 72 (894)
T KOG0132|consen 66 IDSIVRQ 72 (894)
T ss_pred ehHHHHH
Confidence 3333333
No 58
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=72.07 E-value=36 Score=34.28 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=8.2
Q ss_pred hcccCCCCCCCCCCC
Q 015054 237 DRYSRDVYRDDDYRG 251 (414)
Q Consensus 237 ~~~~~~~~~~~~~~~ 251 (414)
|-||-.|.-.+.|||
T Consensus 78 eiygmqgip~~~~r~ 92 (341)
T KOG2893|consen 78 EIYGMQGIPSGAYRG 92 (341)
T ss_pred EEeeccCCCchhhhh
Confidence 345555555555555
No 59
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.84 E-value=43 Score=34.98 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=61.3
Q ss_pred hcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChh----hHHHH--HHHHHHHhccCCCCchhhhHHHHHHHH
Q 015054 16 VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH----EYQMI--IGVIWKRINDTGKNWRHVYKALTVLEY 89 (414)
Q Consensus 16 vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~----~y~~I--m~vLwKRL~~~gk~WR~VyKaL~LLEY 89 (414)
+++.|+..--.+.+++-.|++++-....+.|-.|+-+-.|.. .|..| ..+|...|...+..-+-.-|++.||.+
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444666666777777888888889998999999999887653 23333 457778888877889999999999999
Q ss_pred HHHcC
Q 015054 90 LVAHG 94 (414)
Q Consensus 90 LLkNG 94 (414)
||.--
T Consensus 238 Ll~~~ 242 (342)
T KOG2160|consen 238 LLQED 242 (342)
T ss_pred HHHhh
Confidence 99764
No 60
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=70.21 E-value=11 Score=39.20 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=4.6
Q ss_pred CCCCCCCccc
Q 015054 368 NPNQATNTFD 377 (414)
Q Consensus 368 ~p~~st~~f~ 377 (414)
.+.++.++|-
T Consensus 147 a~~~~~~~f~ 156 (407)
T PF04625_consen 147 AAPQNFFSFF 156 (407)
T ss_pred cccccccccc
Confidence 3444455553
No 61
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=68.52 E-value=4.7 Score=43.15 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.7
Q ss_pred CCCCCC
Q 015054 246 DDDYRG 251 (414)
Q Consensus 246 ~~~~~~ 251 (414)
.-+|++
T Consensus 175 LkEyk~ 180 (480)
T KOG2675|consen 175 LKEYKE 180 (480)
T ss_pred HHHhcc
Confidence 344554
No 62
>PHA03378 EBNA-3B; Provisional
Probab=65.40 E-value=18 Score=40.97 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=4.7
Q ss_pred hcCHHHHHHHH
Q 015054 140 VNDKERIIEVR 150 (414)
Q Consensus 140 L~Dee~LreeR 150 (414)
|.|...|+..+
T Consensus 417 ~td~svi~~i~ 427 (991)
T PHA03378 417 VTDPSVIKAIE 427 (991)
T ss_pred ecCHHHHHHHH
Confidence 44444444333
No 63
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.43 E-value=33 Score=37.59 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=3.0
Q ss_pred cccccc
Q 015054 402 HWTTCL 407 (414)
Q Consensus 402 hW~k~~ 407 (414)
.|..|+
T Consensus 470 ~w~~~~ 475 (585)
T PRK14950 470 IWKQIL 475 (585)
T ss_pred HHHHHH
Confidence 355544
No 64
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=63.64 E-value=19 Score=35.38 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCCCCCHHHHH--HHHHHhc--ChhhHHHHHHHHHHHhccCCCCchhhhHH
Q 015054 27 EQKVLDATSNEPWGPHGTLLA--DIAQATR--NYHEYQMIIGVIWKRINDTGKNWRHVYKA 83 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~--eIA~~T~--n~~~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (414)
++-+..|.+|..|-+=+-.-- -|+-... .-.-...=+..||++|+ .||.|||.
T Consensus 76 ~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----~Wr~vF~~ 132 (221)
T KOG0037|consen 76 AKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----QWRNVFRT 132 (221)
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHHHHh
Confidence 344667888887755221111 1111111 11112233457888884 79999883
No 65
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=59.13 E-value=3.1 Score=42.52 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.5
Q ss_pred hhhHHHHH
Q 015054 56 YHEYQMII 63 (414)
Q Consensus 56 ~~~y~~Im 63 (414)
...|.+++
T Consensus 46 V~afD~~i 53 (312)
T PF01213_consen 46 VEAFDELI 53 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=56.21 E-value=36 Score=28.88 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHH
Q 015054 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVA 92 (414)
Q Consensus 22 ~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~--~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLk 92 (414)
-.+..+.+||.+. -..|.+|++.+... ..|.+|+..|+|.+.|...+ |-++-.+|+.|||
T Consensus 35 ~~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 35 CFDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HcCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 4456666666554 34566777666543 46899999999999998665 6688899999986
No 67
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=55.87 E-value=30 Score=40.30 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=48.7
Q ss_pred HHhcccccCCchHHHHHHHhhcCCC-CCCCHHHHHHHHHHhcChhhHHHHHH-----------HHHHHhccCCCCchhhh
Q 015054 14 RGVNKKVLKVPGIEQKVLDATSNEP-WGPHGTLLADIAQATRNYHEYQMIIG-----------VIWKRINDTGKNWRHVY 81 (414)
Q Consensus 14 r~vkn~v~~~s~~E~kVreATsnD~-WGPt~s~L~eIA~~T~n~~~y~~Im~-----------vLwKRL~~~gk~WR~Vy 81 (414)
+.+.+++.++++.|+....- -.. =+++-++..++...-|+.++-.+|++ ++.|||..+.++||.+.
T Consensus 578 e~i~d~~~~~~e~Eka~~~L--p~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~Kd~EWR~~k 655 (1163)
T COG5602 578 EQIIDKIKDMEESEKANKTL--PGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKDEEWRSCK 655 (1163)
T ss_pred HHHHHHhhcchhhHHHHhcC--CCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHhhHHHHHHH
Confidence 45666666777666554322 122 26788899999999999998888887 56789988888888665
Q ss_pred HHH
Q 015054 82 KAL 84 (414)
Q Consensus 82 KaL 84 (414)
..+
T Consensus 656 Rew 658 (1163)
T COG5602 656 REW 658 (1163)
T ss_pred HHH
Confidence 433
No 68
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.88 E-value=41 Score=39.16 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=4.1
Q ss_pred CCCCCCchH
Q 015054 285 NIGAPPSYE 293 (414)
Q Consensus 285 ~~~apps~~ 293 (414)
+.+.|++|-
T Consensus 13 ~~g~~~~~~ 21 (1007)
T KOG1984|consen 13 NSGPPNFYG 21 (1007)
T ss_pred CCCCCCcCC
Confidence 355444443
No 69
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=51.52 E-value=1.7e+02 Score=30.73 Aligned_cols=98 Identities=18% Similarity=0.298 Sum_probs=60.8
Q ss_pred CCCCHHH-----HHHHHHHh--cChhhHHHHHHHHHHHhcc--CCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHh
Q 015054 39 WGPHGTL-----LADIAQAT--RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (414)
Q Consensus 39 WGPt~s~-----L~eIA~~T--~n~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~I 109 (414)
|..+.+. |+||...- ....++..|+..|++||.. ...++.+.-.||.++. .+.++..+.+|...|
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~------n~~~~~li~~~~~~i 337 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN------NEYFLSLISQNSRVI 337 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG------SHHHHHHHHCTHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC------CHHHHHHHHhChHHH
Confidence 5555443 33444443 4567899999999999875 5568888888887653 466666666665533
Q ss_pred -hhhhcccccCCCCCcccchHHHHHHHHHHHhcCH
Q 015054 110 -STLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDK 143 (414)
Q Consensus 110 -r~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~De 143 (414)
..|-.--|.. .-..|...||..|.+++.+|.+=
T Consensus 338 ~p~i~~~L~~~-~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 338 LPIIFPALYRN-SKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHSST-TSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHh
Confidence 2221111111 23467899999999999999764
No 70
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=50.83 E-value=40 Score=35.78 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=2.3
Q ss_pred CCCCCc
Q 015054 286 IGAPPS 291 (414)
Q Consensus 286 ~~apps 291 (414)
.++.|.
T Consensus 148 ~gaApa 153 (457)
T KOG0559|consen 148 PGAAPA 153 (457)
T ss_pred CCCCCc
Confidence 334443
No 71
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.58 E-value=41 Score=38.09 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=15.6
Q ss_pred CchHHHhhhcCCCCCccCCCCCCCCCCCCC
Q 015054 290 PSYEEAVSESRSPVHSERDGESSASAVPPP 319 (414)
Q Consensus 290 ps~~~a~s~~~~~~~s~~~g~~~~~~~~pp 319 (414)
|.-.+.+..+.++-+..-+..+.++..|||
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~t~a~~~p~~ 87 (922)
T KOG2677|consen 58 PTASEPVQELSPTPEASSSTGTSAPARPPP 87 (922)
T ss_pred CCccCcccccCCCccccccccccCCCCCCC
Confidence 333445666666666555445555444433
No 72
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.28 E-value=42 Score=37.34 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHcCCh--hhHHHHHhhHH
Q 015054 80 VYKALTVLEYLVAHGSE--RVIDDIREHSY 107 (414)
Q Consensus 80 VyKaL~LLEYLLkNGSe--rvV~e~r~h~~ 107 (414)
..++|.+++.|+.+|-+ .++.+|..++.
T Consensus 262 ~~~al~~~~~Ll~~g~~p~~iL~~L~~~~R 291 (620)
T PRK14948 262 PESLLDSCRQLLDRGREPLAILQGLAAFYR 291 (620)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34677788888887754 45555555443
No 73
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.90 E-value=55 Score=36.47 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHHHHhc
Q 015054 37 EPWGPHGTLLADIAQATR 54 (414)
Q Consensus 37 D~WGPt~s~L~eIA~~T~ 54 (414)
+....+...+..|++++.
T Consensus 196 egi~is~~al~~La~~s~ 213 (620)
T PRK14948 196 ESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 333444455666666554
No 74
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=47.13 E-value=1.1e+02 Score=30.79 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccc
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~~ 164 (414)
..-+.|+.|+++ ++.++.+|-...++-.+++|.-
T Consensus 200 ~ly~L~E~L~di---de~f~~WR~rH~~~VeR~IG~K 233 (264)
T TIGR03036 200 ELYELAEKLVDL---EDLFRQWRFRHLTTVERIIGFK 233 (264)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777666 7889999999999999998863
No 75
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=46.58 E-value=6.5 Score=39.10 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=2.4
Q ss_pred HHHhhHHHhhh
Q 015054 101 DIREHSYQIST 111 (414)
Q Consensus 101 e~r~h~~~Ir~ 111 (414)
+|.|...+|+.
T Consensus 7 diWDDtaLIka 17 (264)
T PF06003_consen 7 DIWDDTALIKA 17 (264)
T ss_dssp ------HHHHH
T ss_pred cccccHHHHHH
Confidence 34444555543
No 76
>PLN03131 hypothetical protein; Provisional
Probab=46.04 E-value=63 Score=36.40 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=13.1
Q ss_pred ccchhcccCCC--CCCCCCCCCCCCC
Q 015054 233 RDYEDRYSRDV--YRDDDYRGRSRSV 256 (414)
Q Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~ 256 (414)
|-.|+|++-+| -|-.||+.++...
T Consensus 203 ~~~eDrf~ne~~~~r~~d~s~ss~~~ 228 (705)
T PLN03131 203 RMFEDRFANEGSVSGVSDYSVSSGGD 228 (705)
T ss_pred hhhhcccccCCCCccccccccccccc
Confidence 33466676554 3566676654443
No 77
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.82 E-value=1.7e+02 Score=31.12 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcc-----C------CCCchhhhHHHHHHHHHHHcCChh
Q 015054 59 YQMIIGVIWKRIND-----T------GKNWRHVYKALTVLEYLVAHGSER 97 (414)
Q Consensus 59 y~~Im~vLwKRL~~-----~------gk~WR~VyKaL~LLEYLLkNGSer 97 (414)
+.++.+.+.+||.. + -..|-+.+=.-.|++||++||.-.
T Consensus 84 e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~ 133 (389)
T KOG0396|consen 84 EEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFG 133 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchh
Confidence 45666777777642 1 247999988999999999999743
No 78
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.68 E-value=25 Score=41.16 Aligned_cols=7 Identities=43% Similarity=0.639 Sum_probs=3.5
Q ss_pred hhcCCCC
Q 015054 297 SESRSPV 303 (414)
Q Consensus 297 s~~~~~~ 303 (414)
+++.++.
T Consensus 999 ~~~~~p~ 1005 (1080)
T KOG0566|consen 999 AKSPSPT 1005 (1080)
T ss_pred CCCCCCC
Confidence 4455554
No 79
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=45.43 E-value=50 Score=30.84 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhh
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERV 98 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServ 98 (414)
+-+|..|+.|+ ..++.-|....-+......|+..|.+.|....++=|.+.=+|.+|++||.+|.-+.
T Consensus 98 ~~tesl~~~s~--------~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~~~~~ 164 (193)
T PF12612_consen 98 GLTESLVRASS--------AALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSGVFDS 164 (193)
T ss_pred CCchhHHHHHH--------HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCcchhc
Confidence 34456666655 34444444445566678889999999998887888999999999999999987444
No 80
>PHA03378 EBNA-3B; Provisional
Probab=45.28 E-value=58 Score=37.17 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=10.2
Q ss_pred HHHHHhcCHHHHHHHHHHHH
Q 015054 135 SLVALVNDKERIIEVRQKAA 154 (414)
Q Consensus 135 ~Il~LL~Dee~LreeR~kA~ 154 (414)
.+|+||+.++.-.+.|-.|.
T Consensus 504 s~ldlle~d~e~~eq~vmat 523 (991)
T PHA03378 504 SMLDLLEKDDEDMEQRVMAT 523 (991)
T ss_pred HHHHHHhhchHHHHHHHHHh
Confidence 45555555555555554443
No 81
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=44.21 E-value=1.5e+02 Score=27.05 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHhcChhh-HHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHH
Q 015054 46 LADIAQATRNYHE-YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (414)
Q Consensus 46 L~eIA~~T~n~~~-y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~ 100 (414)
+--+++++..+.. ....+..|.++|.+. ++..=.-||.+|.+|+.+|-..+-.
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k~ 62 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVKG 62 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeehh
Confidence 4445555544433 344677888999887 4555557999999999998755443
No 82
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=43.50 E-value=53 Score=36.30 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=17.7
Q ss_pred CCchhhhHHHHHHHHHHHcCChhhHHHHHhhHH
Q 015054 75 KNWRHVYKALTVLEYLVAHGSERVIDDIREHSY 107 (414)
Q Consensus 75 k~WR~VyKaL~LLEYLLkNGServV~e~r~h~~ 107 (414)
-.|+.|-.+..-++..+.-++-.-+.-+=++++
T Consensus 64 Prwe~~~R~~NP~~~~vi~~p~~~lr~aF~~id 96 (582)
T PF03276_consen 64 PRWEPEPRAVNPLTDPVISAPWNELRRAFDNID 96 (582)
T ss_pred CccccCCcccCcccceeecCcHHHHHHHHhcCC
Confidence 356655566666666665555544444444443
No 83
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=43.45 E-value=20 Score=34.52 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=8.2
Q ss_pred HHHcCChhhHHHHH
Q 015054 90 LVAHGSERVIDDIR 103 (414)
Q Consensus 90 LLkNGServV~e~r 103 (414)
|+..|..+||..+|
T Consensus 60 Ll~E~~~~VigH~r 73 (225)
T KOG3397|consen 60 LLNEENDEVLGHSR 73 (225)
T ss_pred eecccccceeeeec
Confidence 44466666766554
No 84
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.71 E-value=97 Score=35.14 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCCCchhhhHHH-HHHHHHHHcCCh--hhHHHHHhhHHHhhhhhccc
Q 015054 42 HGTLLADIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKAL-TVLEYLVAHGSE--RVIDDIREHSYQISTLSDFQ 116 (414)
Q Consensus 42 t~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL-~LLEYLLkNGSe--rvV~e~r~h~~~Ir~L~~Fq 116 (414)
+.+.++++-.+-+....-..|..++-+-|.- ....--+|+|-| +.++|++.+-.| ++|+-+-.|+- ++
T Consensus 27 hrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~l------Rg- 99 (885)
T COG5218 27 HRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLL------RG- 99 (885)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHH------hc-
Confidence 4556666665555444444566666666542 234555666655 578899998775 67776655532 22
Q ss_pred ccCCCCCcccchHHHHHHHHHHHhcCH
Q 015054 117 YIDSSGRDQGSNVRKKSQSLVALVNDK 143 (414)
Q Consensus 117 y~D~~GkD~G~~VR~KAK~Il~LL~De 143 (414)
.+. ...+||+++-+|+.+|.|-
T Consensus 100 -~es----kdk~VR~r~lqila~~~d~ 121 (885)
T COG5218 100 -TES----KDKKVRKRSLQILALLSDV 121 (885)
T ss_pred -ccC----cchhHHHHHHHHHHHHHHh
Confidence 222 3468999999999999873
No 85
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=41.39 E-value=49 Score=33.59 Aligned_cols=7 Identities=29% Similarity=0.226 Sum_probs=2.7
Q ss_pred CccccCC
Q 015054 374 NTFDNFT 380 (414)
Q Consensus 374 ~~f~~~p 380 (414)
+.|-..+
T Consensus 206 Gtf~r~p 212 (274)
T PLN02983 206 GTFYRSP 212 (274)
T ss_pred eEEEecc
Confidence 3444333
No 86
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=41.30 E-value=44 Score=36.23 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccC---CCCchhhhH-----HHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCC
Q 015054 60 QMIIGVIWKRINDT---GKNWRHVYK-----ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120 (414)
Q Consensus 60 ~~Im~vLwKRL~~~---gk~WR~VyK-----aL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~ 120 (414)
.++.+++.-+|..+ -+.||.+|+ ++.||.||+.+=.+.-.. ++. .+-++|+.|+..++
T Consensus 167 ~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~K-L~k--~l~~Tl~sfr~~Ne 232 (469)
T PF10151_consen 167 KELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKK-LSK--SLKETLKSFRLKNE 232 (469)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHH-HHH--HHHHHHHHHHHhHH
Confidence 56777777777654 368998887 689999998875443222 222 34567777877654
No 87
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.31 E-value=1.1e+02 Score=32.21 Aligned_cols=9 Identities=0% Similarity=-0.104 Sum_probs=4.3
Q ss_pred ccccccccC
Q 015054 277 LERKFSEQN 285 (414)
Q Consensus 277 ~q~~~~~~~ 285 (414)
-.|+.+..+
T Consensus 115 h~W~~pssd 123 (365)
T KOG2391|consen 115 HNWDPPSSD 123 (365)
T ss_pred ccCCCccch
Confidence 356554443
No 88
>COG2180 NarJ Nitrate reductase delta subunit [Energy production and conversion]
Probab=39.88 E-value=69 Score=30.64 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhcccccCC-----chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhh
Q 015054 6 DQTFRDIKRGVNKKVLKV-----PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (414)
Q Consensus 6 ~q~~~dlkr~vkn~v~~~-----s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~V 80 (414)
+|+|.+|+..-++.=+++ +..=-.+.|..+.-+| ++++.--.++.-|+.+|.+||.+.+.-|+++
T Consensus 87 Gqaml~l~~~Y~~~Gl~~~~~ElPDyLPl~LEfLa~~~~----------~~a~~~L~~~~~~~~~l~~~Lee~~spYa~~ 156 (179)
T COG2180 87 GQAMLDLLQTYEKYGLEPDVRELPDYLPLMLEFLALVPE----------EAARRLLSDIRPILAELAKRLEERDSPYAYL 156 (179)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHhcCCH----------HHHHHHHHHhccHHHHHHHHHHhcCCcHHHH
Confidence 678888887765533222 3333455666655555 3333333346789999999999999999999
Q ss_pred hHHHH
Q 015054 81 YKALT 85 (414)
Q Consensus 81 yKaL~ 85 (414)
+++|.
T Consensus 157 ~~aL~ 161 (179)
T COG2180 157 FDALL 161 (179)
T ss_pred HHHHH
Confidence 99875
No 89
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=39.69 E-value=38 Score=22.34 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=15.2
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 015054 85 TVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~ 104 (414)
.|++||+++|-.+...-|+.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58899999998887776653
No 90
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=39.18 E-value=21 Score=36.55 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.1
Q ss_pred HHHHHcCCh-hhHHHHHhhHHHhhhhhcccccC
Q 015054 88 EYLVAHGSE-RVIDDIREHSYQISTLSDFQYID 119 (414)
Q Consensus 88 EYLLkNGSe-rvV~e~r~h~~~Ir~L~~Fqy~D 119 (414)
-|||.||.. |+|+++..|.. |.+-+-|+++-
T Consensus 254 THLL~~GADlRvVQeLLGHad-isTTQIYTHV~ 285 (300)
T COG4974 254 THLLENGADLRVVQELLGHAD-ISTTQIYTHVT 285 (300)
T ss_pred HHHHhCCccHHHHHHHhCccc-cchhHHHHHHH
Confidence 589999975 99999999998 77777887763
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.80 E-value=6.7e+02 Score=28.92 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 81 YKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 81 yKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
.+.|.+++-|+.+|-+ +..++++.+..|+.|.-++...+ ..+......++.+++.+.+ +.+.|+..-+.+.+.++.+
T Consensus 267 ~~~l~l~~~l~~~G~d-~~~~L~dLl~~l~~l~l~q~~~~-~~~~~~~~~~~~~~~a~~~-s~~~l~~~~q~~~~~~~el 343 (700)
T PRK12323 267 AALLAIADEMAGRSLS-FAGALQDLASLLQKIALAQVVPA-AVQDDWPEADDIRRLAGRF-DAQEVQLFYQIANLGRSEL 343 (700)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhCch-hcccccchHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 3567788888888887 66777777766666666655432 1211111244444444444 3455555555555555555
Q ss_pred hc
Q 015054 161 RN 162 (414)
Q Consensus 161 ~g 162 (414)
..
T Consensus 344 ~~ 345 (700)
T PRK12323 344 AL 345 (700)
T ss_pred cc
Confidence 43
No 92
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=38.73 E-value=35 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=16.8
Q ss_pred HHHHHHHHcCChhhHHHHHhh
Q 015054 85 TVLEYLVAHGSERVIDDIREH 105 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h 105 (414)
.|++||+.+|-......|+.-
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e 29 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKE 29 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 499999999998877666543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=37.48 E-value=3e+02 Score=29.65 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCCCchhhhHHHHHHHHHHHc
Q 015054 42 HGTLLADIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAH 93 (414)
Q Consensus 42 t~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkN 93 (414)
.+..|-+|+++-|..-+...-+.+|..+|.- ..|.+-..||.|.-|.-+|-+
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 3577899999999998888899999999863 456666666666555544443
No 94
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.14 E-value=1.3e+02 Score=35.28 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=7.5
Q ss_pred CCCCCCCCCCcccccCCC
Q 015054 176 SSGGNGDRYDNDRYEGRY 193 (414)
Q Consensus 176 s~ggy~~~~d~~~~~~~~ 193 (414)
.+||+++..-..-..+++
T Consensus 19 ~~~g~~~~~a~~~~~~~~ 36 (1007)
T KOG1984|consen 19 FYGGSSNSLAQAMPNGSI 36 (1007)
T ss_pred cCCCCCchhhhhccCCcc
Confidence 345555443333333433
No 95
>PRK15054 nitrate reductase 2 subunit delta; Provisional
Probab=36.95 E-value=95 Score=30.77 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhcccccCC-----chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhh
Q 015054 6 DQTFRDIKRGVNKKVLKV-----PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (414)
Q Consensus 6 ~q~~~dlkr~vkn~v~~~-----s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~V 80 (414)
+|+|-+|+...+..=+.+ +..==.|.|-.+.-+..-....|. ++..|+++|..||.+.+.-|..|
T Consensus 81 GqAmvdL~~~Y~~~G~~~~~~ELPDyLPl~LEfla~~~~~~a~~~L~----------~~~~iLe~L~~rL~~~~SpYa~l 150 (231)
T PRK15054 81 GQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDDQAKEGLL----------NVAPILALLGGRLKQREAPWYAL 150 (231)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcchHHHHHHHHhcCChHHHHHHHH----------HHHHHHHHHHHHHHHcCCChHHH
Confidence 577888888766643333 333346666666544322222333 44569999999999999999999
Q ss_pred hHHHHHH
Q 015054 81 YKALTVL 87 (414)
Q Consensus 81 yKaL~LL 87 (414)
+.+|..|
T Consensus 151 ~~all~l 157 (231)
T PRK15054 151 FDALLQL 157 (231)
T ss_pred HHHHHHH
Confidence 9999544
No 96
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=36.69 E-value=21 Score=26.28 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhhH--------HHhhhhhccccc
Q 015054 80 VYKALTVLEYLVAHGSERVIDDIREHS--------YQISTLSDFQYI 118 (414)
Q Consensus 80 VyKaL~LLEYLLkNGServV~e~r~h~--------~~Ir~L~~Fqy~ 118 (414)
|-|+|.||++|..++..--+.++-+++ .+|++|.+.-|+
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence 579999999999999864444443332 245666555444
No 97
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.05 E-value=2.2e+02 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS 95 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS 95 (414)
..+..++.+|.....+..+.+|.. ...||.+|+..+.
T Consensus 32 ~~~~~vv~~~l~~~le~~~~~r~~--~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 32 SQHHEVVKVILECALEEKKSYREY--YSKLLSHLCKRKL 68 (113)
T ss_dssp GGHHHHHHHHHHHHHTSSHHHHHH--HHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHhcCC
Confidence 344555555555554444455543 3457778887764
No 98
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.44 E-value=1.5e+02 Score=36.23 Aligned_cols=121 Identities=11% Similarity=0.011 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHH-HHHHHHhccCC-------CCchhhhHHHHHHHHHHHcCChhhH
Q 015054 29 KVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMII-GVIWKRINDTG-------KNWRHVYKALTVLEYLVAHGSERVI 99 (414)
Q Consensus 29 kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im-~vLwKRL~~~g-------k~WR~VyKaL~LLEYLLkNGServV 99 (414)
..+.|-+.+.|++...+-.+|....|.- .+++.++ .+|..-|.... +.|.++|..|-++.+-.-|-=..+.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 3456666777888777777887777644 2333433 44444555432 3344444433333333222222233
Q ss_pred HHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHH
Q 015054 100 DDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKA 153 (414)
Q Consensus 100 ~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA 153 (414)
..++.++...=.|.++++.|. ....|..+...|.+.|-|.-.....+.+.
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~f 538 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMKF 538 (1266)
T ss_pred HHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHHH
Confidence 333333322114555555543 56677888888888888886666555554
No 99
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=34.53 E-value=43 Score=28.66 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc-------------CCCCchhhhHHH
Q 015054 40 GPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-------------TGKNWRHVYKAL 84 (414)
Q Consensus 40 GPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~-------------~gk~WR~VyKaL 84 (414)
.++..+|..|-..+ .++....+.||+++.. ..+.||.+|-.|
T Consensus 18 ~~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 18 KCSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKL 72 (109)
T ss_pred cCCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHH
Confidence 34667777777765 4455667888888753 235788887644
No 100
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=34.15 E-value=1.8e+02 Score=31.63 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc
Q 015054 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND 72 (414)
Q Consensus 5 ~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~ 72 (414)
..+-++.||+++.|++.++++.+..+. -++..--||-+|.+|+++|.+-=.+
T Consensus 28 wqk~v~~Ir~KI~~a~~dmPe~~~~~~----------------lL~~~~InY~hvk~iiEIL~~Tekd 79 (505)
T KOG2607|consen 28 WQKRVAVIRVKILKAFSDMPEIDPFFQ----------------LLDPEVINYLHVKKIIEILLKTEKD 79 (505)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHH----------------HhchhhcchHhHHHHHHHHHhcChh
Confidence 456678888888888888877766552 2333345888899999999876654
No 101
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=33.66 E-value=73 Score=33.05 Aligned_cols=40 Identities=5% Similarity=0.057 Sum_probs=30.7
Q ss_pred cccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcc
Q 015054 124 DQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (414)
Q Consensus 124 D~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~ 163 (414)
++-...+.+++.+++||++.+.|..-+.+++..=.+-+|.
T Consensus 139 ~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G~ 178 (361)
T PF08467_consen 139 PKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIGR 178 (361)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666778999999999999999988777776654444333
No 102
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=33.23 E-value=1.6e+02 Score=32.46 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=7.4
Q ss_pred cchHHHHHHHHHHHhc
Q 015054 126 GSNVRKKSQSLVALVN 141 (414)
Q Consensus 126 G~~VR~KAK~Il~LL~ 141 (414)
...|.+.++.|-.||.
T Consensus 214 ~eki~~Ai~vienli~ 229 (554)
T KOG0119|consen 214 QEKIKKAIAVIENLIQ 229 (554)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445544444444444
No 103
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=33.02 E-value=84 Score=34.85 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHH
Q 015054 43 GTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLE 88 (414)
Q Consensus 43 ~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLE 88 (414)
-..|.+..+.+++ +..|..=++.|.+.=+.-. +-+.-.|-|++|.
T Consensus 63 I~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~-~sk~~ik~lt~lK 108 (574)
T PF07462_consen 63 IEELKKKIQVSLDHYGKYKLKLERLLKKKNKIS-NSKEQIKKLTILK 108 (574)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3445555666664 4556555555544433222 2233345566654
No 104
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.46 E-value=4e+02 Score=26.50 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=49.2
Q ss_pred chHHHHHHHhhcCCCC-----CCCHHHHHHHHHHhcChhhH-HHHHHHHHHHhccCCCCchhhhHHH----HHHHHHHHc
Q 015054 24 PGIEQKVLDATSNEPW-----GPHGTLLADIAQATRNYHEY-QMIIGVIWKRINDTGKNWRHVYKAL----TVLEYLVAH 93 (414)
Q Consensus 24 s~~E~kVreATsnD~W-----GPt~s~L~eIA~~T~n~~~y-~~Im~vLwKRL~~~gk~WR~VyKaL----~LLEYLLkN 93 (414)
--.|+++.++..++.- .....+|..+...-.+..+| ..|+.+++|- .-+.|+.+|+.| .|++-+|.+
T Consensus 116 ~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C~RKt---E~~~W~~LF~~lg~P~dLf~~cl~~ 192 (258)
T PF07064_consen 116 HALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNCARKT---EVRYWPYLFDYLGSPRDLFEECLEN 192 (258)
T ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHHHHhh---HHHHHHHHHHhcCCHHHHHHHHHHc
Confidence 3458888887776654 56678888888887666665 4455555543 235899999876 577888887
Q ss_pred CChh
Q 015054 94 GSER 97 (414)
Q Consensus 94 GSer 97 (414)
|.-+
T Consensus 193 ~~l~ 196 (258)
T PF07064_consen 193 GNLK 196 (258)
T ss_pred CcHH
Confidence 7654
No 105
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.29 E-value=69 Score=32.42 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=47.2
Q ss_pred cCCchHHHHHHHhhc---CCCCCCCHH------HHHHHHHHhcChhhHHHHHHHHHHHhcc-CCCCchhhhHHH--HHHH
Q 015054 21 LKVPGIEQKVLDATS---NEPWGPHGT------LLADIAQATRNYHEYQMIIGVIWKRIND-TGKNWRHVYKAL--TVLE 88 (414)
Q Consensus 21 ~~~s~~E~kVreATs---nD~WGPt~s------~L~eIA~~T~n~~~y~~Im~vLwKRL~~-~gk~WR~VyKaL--~LLE 88 (414)
.++.....++..+.. .+.+..+.. --..+...+.+...+.+|++.|..|+.+ .+.-+..|-.+- -.+|
T Consensus 164 ~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~LmN~l~~~p~DpYv~i~~~~WPpyie 243 (268)
T PF11802_consen 164 EKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEILMNKLLDSPHDPYVKIDDSFWPPYIE 243 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHHHHHhcCCCCCCceecCcccChHHHH
Confidence 334445555555554 344443332 3334556777888889999999999875 333444444443 5799
Q ss_pred HHHHcCC
Q 015054 89 YLVAHGS 95 (414)
Q Consensus 89 YLLkNGS 95 (414)
+||++|-
T Consensus 244 ~LlR~GI 250 (268)
T PF11802_consen 244 LLLRSGI 250 (268)
T ss_pred HHHHcCC
Confidence 9999993
No 106
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=32.19 E-value=2.1e+02 Score=27.97 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=5.3
Q ss_pred hHHHhhhcC
Q 015054 292 YEEAVSESR 300 (414)
Q Consensus 292 ~~~a~s~~~ 300 (414)
|+|.|.+..
T Consensus 131 f~elVkk~p 139 (205)
T PF12238_consen 131 FEELVKKKP 139 (205)
T ss_pred HHHHhhhcc
Confidence 666665554
No 107
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=32.03 E-value=2.4e+02 Score=30.10 Aligned_cols=95 Identities=25% Similarity=0.429 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 015054 307 RDGESSASAVPPPGP---------PGVLPPPARLGASSPPAAPGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTFD 377 (414)
Q Consensus 307 ~~g~~~~~~~~pp~p---------pp~p~p~~~~~~~~pp~~~~~~~ppp~~~~~~~~~~~~~~~~p~~~~p~~st~~f~ 377 (414)
+|--.-+.+.++++| -|++|++....+.-+|--...+++||.....+.++++++..+......-.-|+.-+
T Consensus 311 rd~p~r~ap~pppPPv~r~~sar~~P~pPp~~~~~ts~~P~~~~rpP~PPs~~~A~~PPPPPPs~s~~~g~~~t~t~~dd 390 (437)
T KOG4462|consen 311 RDPPSRAAPAPPPPPVSRTGSARDAPAPPPPAPNVTSESPKSGNRPPPPPSRSPAPAPPPPPPSASYRPGQRPTRTSADD 390 (437)
T ss_pred cCcccccCCCCCCCccccccccccCCCCCCCcccccccCCCcCCCCCCCCCcccCCCCCCCCCccccCCCCCCccccccc
Q ss_pred cCCC----CccCCCCCCccCCCCCCCCccccccccc
Q 015054 378 NFTS----ANQEAVAPDEFDPRGSVQAPHWTTCLNK 409 (414)
Q Consensus 378 ~~ps----~~~~~~~~dk~dPr~~~k~~hW~k~~~~ 409 (414)
.-.. +...+...+.| +|..||+++
T Consensus 391 ~esr~~fhp~s~~p~Pep~--------~~~~~iy~~ 418 (437)
T KOG4462|consen 391 DESRFSFHPDSDLPIPEPF--------LFLPKIYPS 418 (437)
T ss_pred ccccccccchhccCCCccc--------ccchhhccc
No 108
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=31.81 E-value=4.8e+02 Score=25.16 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=35.4
Q ss_pred HHHHHHHhcccccCCchHH---HHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHH
Q 015054 9 FRDIKRGVNKKVLKVPGIE---QKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85 (414)
Q Consensus 9 ~~dlkr~vkn~v~~~s~~E---~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~ 85 (414)
-+-|++-+.+=+.+...++ ..|.++..+. .+...|........+...|+..+.+. .-+.++|..++++|.
T Consensus 17 ~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~------~l~~~l~~~L~~~~Di~~~l~~~~~~-~~~~~el~~l~~~l~ 89 (308)
T smart00533 17 KRLLRRWLLQPLLDLKEINERLDAVEELVENP------ELRQKLRQLLKRIPDLERLLSRIERG-RASPRDLLRLYDSLE 89 (308)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHhCh------HHHHHHHHHHccCCcHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3444444444334444444 2344555421 33344443334445555555554322 124567888888887
Q ss_pred HHH
Q 015054 86 VLE 88 (414)
Q Consensus 86 LLE 88 (414)
.+.
T Consensus 90 ~~~ 92 (308)
T smart00533 90 GLK 92 (308)
T ss_pred HHH
Confidence 433
No 109
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=31.79 E-value=90 Score=33.38 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhHH
Q 015054 83 ALTVLEYLVAHGSERVIDDIREHSY 107 (414)
Q Consensus 83 aL~LLEYLLkNGServV~e~r~h~~ 107 (414)
.|.||.||+++|-..|+..+..--+
T Consensus 345 ~m~iL~~i~~~G~~~fL~t~L~~eY 369 (424)
T TIGR02986 345 YMRILWYILSNGGAEFLATLLKPEY 369 (424)
T ss_pred HHHHHHHHHHcccHHHHHHHcChhh
Confidence 5789999999999999988765443
No 110
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=31.57 E-value=50 Score=30.73 Aligned_cols=88 Identities=14% Similarity=0.248 Sum_probs=59.0
Q ss_pred HHhcccccCCchHHHHHHHhhcCCCCCCC----HHHHHHHHHHh-cChhhHHHHHHHHHHHhcc------CCCCchhhhH
Q 015054 14 RGVNKKVLKVPGIEQKVLDATSNEPWGPH----GTLLADIAQAT-RNYHEYQMIIGVIWKRIND------TGKNWRHVYK 82 (414)
Q Consensus 14 r~vkn~v~~~s~~E~kVreATsnD~WGPt----~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~------~gk~WR~VyK 82 (414)
..+.+.+..|-..|...|-=..+.-|-=. +.++.||+... +...++..||.+|...+.. .+..||-+
T Consensus 42 ~~~~~~~~~Yl~~E~D~RGfv~~~GWaHa~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~~~~~~~~~~~EdeRLa-- 119 (175)
T PF10978_consen 42 QELIDQLIRYLLLEKDTRGFVEEKGWAHAFAHGADLLDELVQHPELDRADKIELLAAILEKYKRLSTPFIDGEDERLA-- 119 (175)
T ss_pred HHHHHHHHHHHHHccccccCCccCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCcceeCCChhHHH--
Confidence 34555555666677777766666777332 23455555554 4667889999999988865 46788754
Q ss_pred HHHHHHHHHHcC--C-hhhHHHHHhh
Q 015054 83 ALTVLEYLVAHG--S-ERVIDDIREH 105 (414)
Q Consensus 83 aL~LLEYLLkNG--S-ervV~e~r~h 105 (414)
++|-++++++ + +.++.|++.-
T Consensus 120 --~~~~~~l~~~~l~~~~~~~wl~~~ 143 (175)
T PF10978_consen 120 --TALIELLNRNKLYQEELLSWLKSW 143 (175)
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5677788887 3 4677777764
No 111
>PRK14137 recX recombination regulator RecX; Provisional
Probab=30.96 E-value=2.8e+02 Score=26.56 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC-hhhHHHHHhhHHHh
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS-ERVIDDIREHSYQI 109 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS-ervV~e~r~h~~~I 109 (414)
+++..++.+|.|++........ .| -.|+.||+..|= ..+|..+-.++...
T Consensus 132 de~e~a~~l~~KK~~~~~~~~~--~k-~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 132 EEQQEARNLLERRWSSFARKRD--PR-ASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred hHHHHHHHHHHHhccccCcchh--HH-HHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 4566777788788754322222 22 347889999994 46666665554433
No 112
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=30.73 E-value=1.5e+02 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHcCChhhHHHHHhhH--------HHhhhhhcccccC
Q 015054 79 HVYKALTVLEYLVAHGSERVIDDIREHS--------YQISTLSDFQYID 119 (414)
Q Consensus 79 ~VyKaL~LLEYLLkNGServV~e~r~h~--------~~Ir~L~~Fqy~D 119 (414)
.+-|+|.||++|..++..--+.++-+.+ ..|+.|.+..|+.
T Consensus 3 ~~~r~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~ 51 (91)
T smart00346 3 SLERGLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVE 51 (91)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 3568999999999883333344443322 3456666655654
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.42 E-value=1.8e+02 Score=33.94 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 015054 309 GESSASAVPP 318 (414)
Q Consensus 309 g~~~~~~~~p 318 (414)
|...|+..||
T Consensus 84 G~~lP~~LPP 93 (1118)
T KOG1029|consen 84 GIQLPPVLPP 93 (1118)
T ss_pred CCcCCCCCCh
Confidence 4444444444
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.38 E-value=1.4e+02 Score=33.55 Aligned_cols=7 Identities=14% Similarity=0.022 Sum_probs=3.1
Q ss_pred CCCCccC
Q 015054 379 FTSANQE 385 (414)
Q Consensus 379 ~ps~~~~ 385 (414)
+|+...+
T Consensus 463 ~~~~~~~ 469 (620)
T PRK14954 463 LGSWQGK 469 (620)
T ss_pred cHhhhhh
Confidence 4444433
No 115
>PF14979 TMEM52: Transmembrane 52
Probab=29.08 E-value=60 Score=30.26 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=14.3
Q ss_pred CCCCCchHHHhhhcCCCCC
Q 015054 286 IGAPPSYEEAVSESRSPVH 304 (414)
Q Consensus 286 ~~apps~~~a~s~~~~~~~ 304 (414)
...||+|||||.-+....-
T Consensus 117 ~e~PP~YeEAlkM~k~r~~ 135 (154)
T PF14979_consen 117 LELPPSYEEALKMAKPRFE 135 (154)
T ss_pred CCCCCCHHHHHhhcccccc
Confidence 4579999999988664443
No 116
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.96 E-value=1.8e+02 Score=24.38 Aligned_cols=51 Identities=27% Similarity=0.265 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcC---hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChh
Q 015054 43 GTLLADIAQATRN---YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER 97 (414)
Q Consensus 43 ~s~L~eIA~~T~n---~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSer 97 (414)
.++|..|++. |. ..-..+|+..+.|.|.+..+.+-..|=||.-|..| |++-
T Consensus 27 A~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 27 ASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 5678888875 32 23467999999999999999999999999999988 6543
No 117
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=28.86 E-value=1.7e+02 Score=28.51 Aligned_cols=10 Identities=30% Similarity=0.179 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 015054 147 IEVRQKAAAN 156 (414)
Q Consensus 147 reeR~kA~k~ 156 (414)
.+.|+++.+.
T Consensus 80 ~~~~~~~~~Y 89 (205)
T PF12238_consen 80 EEGREKMTKY 89 (205)
T ss_pred hccHHHHHHH
Confidence 4444444444
No 118
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=28.73 E-value=2.9e+02 Score=22.86 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCC------Cch------hhhHHHHHHHHHHH
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGK------NWR------HVYKALTVLEYLVA 92 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk------~WR------~VyKaL~LLEYLLk 92 (414)
.+++|..+|+... .....+.++=-+||.. -.=.++++.|..|...... .|. .-.+.+.||.+.|.
T Consensus 2 l~~Li~~L~~~~~--~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~ 79 (122)
T cd06224 2 LEALIEHLTSTFD--MPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVE 79 (122)
T ss_pred HHHHHHHHcCCCc--cccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888765 4556666666667643 3346788888888875321 122 22356777888887
Q ss_pred cCChhhHHHHHhhHHHhhhhhcc
Q 015054 93 HGSERVIDDIREHSYQISTLSDF 115 (414)
Q Consensus 93 NGServV~e~r~h~~~Ir~L~~F 115 (414)
+-...+- .+..+++.|.+|
T Consensus 80 ~~~~df~----~d~~l~~~l~~F 98 (122)
T cd06224 80 NYPYDFF----DDEELLELLEEF 98 (122)
T ss_pred hCCCccc----ccHHHHHHHHHH
Confidence 7777654 345556666666
No 119
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=28.36 E-value=89 Score=27.21 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHhccccc---CCchHHHHH--HHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCC
Q 015054 11 DIKRGVNKKVL---KVPGIEQKV--LDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTG 74 (414)
Q Consensus 11 dlkr~vkn~v~---~~s~~E~kV--reATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~g 74 (414)
.+++.++..|. .++++++.. +.++ +|....-|..++.....|..+++.|.+|.....
T Consensus 10 ~F~~~F~~~v~~n~~~~d~~K~~~L~~~L-------~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~ 71 (145)
T PF03564_consen 10 EFIDQFDSLVHENPDLSDIEKLNYLRSCL-------KGEAKELIRGLPLSEENYEEAWELLEERYGNPR 71 (145)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHh-------cchHHHHHHcccccchhhHHHHHHHHHHhCCch
Confidence 45555555553 457777553 4554 355667777777888899999999999997654
No 120
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.16 E-value=2.6e+02 Score=30.58 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.3
Q ss_pred HhcChhhHHHHHHHHHHH
Q 015054 52 ATRNYHEYQMIIGVIWKR 69 (414)
Q Consensus 52 ~T~n~~~y~~Im~vLwKR 69 (414)
...||-+|.+|+++|..-
T Consensus 61 ~~i~Y~~c~~i~~iL~~t 78 (507)
T PF05600_consen 61 SYINYFHCKRIVEILKQT 78 (507)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 346888999999888765
No 121
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=28.14 E-value=4.4e+02 Score=23.60 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhH-HHHHHHHHHHh
Q 015054 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRI 70 (414)
Q Consensus 5 ~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y-~~Im~vLwKRL 70 (414)
|...+..+++.|..+...+..+=.++.+|..+.+ ..++.+|.+.-...+.+ .+|...+...|
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d----~~~~~~i~~~e~~id~l~~~i~~~~l~~i 65 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKD----RELARKVIEDDDQINALEVKIEEKCLRLI 65 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 4445666666666654444444445556654422 46677777766555543 45655433443
No 122
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.70 E-value=1e+02 Score=29.34 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCcccchHHHHHHHHHHHhcCHHHHHHHHHH
Q 015054 122 GRDQGSNVRKKSQSLVALVNDKERIIEVRQK 152 (414)
Q Consensus 122 GkD~G~~VR~KAK~Il~LL~Dee~LreeR~k 152 (414)
|.|......---++|-.||.|+..|+..++-
T Consensus 61 ~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI 91 (179)
T TIGR00624 61 GFDIVKVARMTDADVERLLQDDGIIRNRGKI 91 (179)
T ss_pred CCCHHHHhCCCHHHHHHHhcCccchhhHHHH
Confidence 4555555555567788888888888875554
No 123
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.25 E-value=1.6e+02 Score=32.11 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 015054 148 EVRQKAAANRDK 159 (414)
Q Consensus 148 eeR~kA~k~R~K 159 (414)
.|.+.+++.++|
T Consensus 324 DEkEaeak~~kK 335 (483)
T KOG2236|consen 324 DEKEAEAKQMKK 335 (483)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 124
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=26.83 E-value=2e+02 Score=28.19 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhh
Q 015054 75 KNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQIS 110 (414)
Q Consensus 75 k~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir 110 (414)
..-+..+++|.|++=|+.+|...||.|+-.-..+++
T Consensus 121 ~ia~~~~~~l~l~e~l~~~gNkn~itD~gaaa~ll~ 156 (208)
T COG3404 121 DIATLMVDLLELLEKLVEKGNKNAITDAGAAADLLH 156 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhHHHHHHHHH
Confidence 455678999999999999999999999977665544
No 125
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=26.57 E-value=3.9e+02 Score=24.18 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=9.5
Q ss_pred cCCchHHHHHHHhh
Q 015054 21 LKVPGIEQKVLDAT 34 (414)
Q Consensus 21 ~~~s~~E~kVreAT 34 (414)
+.++++|.-|.++.
T Consensus 2 ~~Is~aE~eVM~il 15 (123)
T COG3682 2 MSISAAEWEVMEIL 15 (123)
T ss_pred CcccHHHHHHHHHH
Confidence 45677777776666
No 126
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=26.56 E-value=64 Score=30.18 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 131 KKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 131 ~KAK~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
+-++.|.+|+.|++.+++.++++.+...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 788889999999998887777777665554
No 127
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.38 E-value=1.1e+03 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHcCCh--hhHHHHHhhHHHhhhh
Q 015054 80 VYKALTVLEYLVAHGSE--RVIDDIREHSYQISTL 112 (414)
Q Consensus 80 VyKaL~LLEYLLkNGSe--rvV~e~r~h~~~Ir~L 112 (414)
+.++|.+|+.|+.+|-. +|+.+|.+|+..|-.|
T Consensus 263 ~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~v 297 (824)
T PRK07764 263 GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVL 297 (824)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44777889999999854 6777776665444333
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.30 E-value=7.8e+02 Score=26.81 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC------------CCCch-------------hhhHH
Q 015054 29 KVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT------------GKNWR-------------HVYKA 83 (414)
Q Consensus 29 kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~------------gk~WR-------------~VyKa 83 (414)
.|+.....+..-.+...+..|++.+-. +...++..|.+.+... +..|. .+-+|
T Consensus 183 ~L~~i~~~egi~i~~~Al~~ia~~s~G--dlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~~~d~~~A 260 (504)
T PRK14963 183 KLRRLLEAEGREAEPEALQLVARLADG--AMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALAQGDAAEA 260 (504)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHHcCCHHHH
Confidence 334434444444566666666666542 3444555554433221 22222 35578
Q ss_pred HHHHHHHHHcC
Q 015054 84 LTVLEYLVAHG 94 (414)
Q Consensus 84 L~LLEYLLkNG 94 (414)
|.+++-|+..|
T Consensus 261 l~~l~~Ll~~G 271 (504)
T PRK14963 261 LSGAAQLYRDG 271 (504)
T ss_pred HHHHHHHHHcC
Confidence 88888888888
No 129
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=4.2e+02 Score=30.13 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcc
Q 015054 83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDF 115 (414)
Q Consensus 83 aL~LLEYLLkNGServV~e~r~h~~~Ir~L~~F 115 (414)
||.++.|+|+|-.|.=.-++.-.+.-|+.+-+|
T Consensus 183 ~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~f 215 (881)
T COG5110 183 GLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDF 215 (881)
T ss_pred HHHHhHHHHhcccchHHHHHHHHhcchhhhhhh
Confidence 789999999987765444455556667776666
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=25.57 E-value=3.8e+02 Score=22.06 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=34.5
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhh
Q 015054 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (414)
Q Consensus 22 ~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~V 80 (414)
++..+...+..+...+++ .......++..-+...+|.....++.+.+.....+|...
T Consensus 32 ~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred cHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 345555566666665555 345566667666666777777777776665554454433
No 131
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=25.56 E-value=2.7e+02 Score=30.64 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=23.3
Q ss_pred hhHHHHHhhHHHhh--hhhcc--cccCCCCCc--ccchHHHHHHHHHHHhc
Q 015054 97 RVIDDIREHSYQIS--TLSDF--QYIDSSGRD--QGSNVRKKSQSLVALVN 141 (414)
Q Consensus 97 rvV~e~r~h~~~Ir--~L~~F--qy~D~~GkD--~G~~VR~KAK~Il~LL~ 141 (414)
.|+++|..|+..|- ..-+| ||+=++|.. .-..+...+.+|++|-+
T Consensus 355 ~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq 405 (503)
T KOG1488|consen 355 PLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQ 405 (503)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHH
Confidence 46777777766552 22234 454444543 33333555666666554
No 132
>PF01767 Birna_VP3: Birnavirus VP3 protein; InterPro: IPR002663 VP3 is a minor structural component of the virus. The large RNA segment of Birnaviridae codes for a polyprotein (N-VP2-VP4-VP3-C) [].; GO: 0005198 structural molecule activity; PDB: 2R18_A 2Z7J_A.
Probab=25.54 E-value=58 Score=32.43 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHH
Q 015054 80 VYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQS 135 (414)
Q Consensus 80 VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~ 135 (414)
++|.|.|+-+|-+|| +|.+|.+|-..|++|.-.+.-|+...++
T Consensus 45 ~~kll~l~~W~~~ng-------------lid~m~~~a~~D~~~~rl~r~i~n~~~~ 87 (243)
T PF01767_consen 45 EEKLLSLISWLRENG-------------LIDMMYNFAKTDPRGVRLERMIQNLPKQ 87 (243)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHhhcc-------------HHHHHHHHHhhCchHHHHHHHhcCCccc
Confidence 889999999988886 4455556655666555555555544443
No 133
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=25.34 E-value=4.2e+02 Score=29.47 Aligned_cols=64 Identities=8% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CC-CCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHh
Q 015054 43 GTLLADIAQATRNYHEYQMIIGVIWKRIND--TG-KNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (414)
Q Consensus 43 ~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~--~g-k~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~I 109 (414)
+..++.|.+..-+.++-..|++.|.-++.. +. ---..|.+||.++.+ ...+-+.+.+-++...|
T Consensus 304 Tr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~---~~~~~l~e~i~~~c~~i 370 (536)
T KOG2049|consen 304 TRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSK---EKNEFLYEAILRYCLDL 370 (536)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCc---hhhhHHHHHHHHHHHHH
Confidence 455667777777777778888888888653 22 234567788877654 33333333344444333
No 134
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=24.89 E-value=1.7e+02 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=36.1
Q ss_pred cCChhhHHHHHhh-HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 015054 93 HGSERVIDDIREH-SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRD 158 (414)
Q Consensus 93 NGServV~e~r~h-~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~ 158 (414)
||.+++..++... ..++..|..+ .+.+..|+++|.|++.+.+-|..-..+.+
T Consensus 58 ~~~~e~p~e~~~kr~~Vl~~l~~l--------------~~~~~~v~~~~~~~ev~~~l~~dk~~nl~ 110 (133)
T PF09440_consen 58 YPDDEVPAELAEKREEVLAELKEL--------------EEETEPVLELLEDPEVVKNLRSDKKQNLE 110 (133)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHcCHHHHHHHHccHHHHHH
Confidence 5666666666443 3455555443 46788999999999999998886666543
No 135
>PF14638 FNIP_C: Folliculin-interacting protein C-terminus
Probab=24.80 E-value=1.1e+02 Score=29.42 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.4
Q ss_pred HHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhh
Q 015054 63 IGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERV 98 (414)
Q Consensus 63 m~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServ 98 (414)
|.+|..||.+ .++|+++|.|||.++|..+|
T Consensus 132 l~~lEd~L~e------l~~KS~~Lae~l~~~~~~~~ 161 (192)
T PF14638_consen 132 LMHLEDKLRE------LYLKSKTLAEYLRKRGTSRC 161 (192)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHhccCCccc
Confidence 4466667643 37899999999999998874
No 136
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.79 E-value=90 Score=30.16 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhh
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~-R~K~ 160 (414)
++.+.++.|.+||.|++.+.+.++++.+. .++|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 56788999999999999988888887776 5554
No 137
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=24.49 E-value=1e+02 Score=26.47 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHH-HHHHHcCChh-hHHHHHhhH
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVL-EYLVAHGSER-VIDDIREHS 106 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LL-EYLLkNGSer-vV~e~r~h~ 106 (414)
.+...|=.+|-+||...|- -||-+|| .|||.+-.++ |.+|+++-.
T Consensus 22 ~~laGIG~~lg~~L~~~Gf-----dKAy~vLGqfLll~kde~~F~~WLk~~~ 68 (89)
T PF02961_consen 22 TELAGIGPVLGKRLEEKGF-----DKAYVVLGQFLLLKKDEELFQDWLKDTC 68 (89)
T ss_dssp GGSTT--HHHHHHHHHTT-------BHHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHCCC-----cHHHHHhhhhhhccCcHHHHHHHHHHHh
Confidence 3456788999999998873 4776665 6888888864 888888743
No 138
>KOG4380 consensus Carnitine deficiency associated protein [General function prediction only]
Probab=24.45 E-value=6.2e+02 Score=24.92 Aligned_cols=104 Identities=13% Similarity=0.231 Sum_probs=64.6
Q ss_pred HHHHhcChhhHHHHHHHHHHHhc-cCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHh-hhhhcccccCCCCCccc
Q 015054 49 IAQATRNYHEYQMIIGVIWKRIN-DTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI-STLSDFQYIDSSGRDQG 126 (414)
Q Consensus 49 IA~~T~n~~~y~~Im~vLwKRL~-~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~I-r~L~~Fqy~D~~GkD~G 126 (414)
+-++-|+..+|..=+-.|-.-|. .+......++||..|+ +..|=..++|.+.-+.+..+ .+|-. ++ -|.+.|
T Consensus 120 L~~LD~~~P~F~~~~~AL~~iL~I~~H~D~~VmmKA~~i~--i~E~L~~D~iA~~~~~~~~~~~~L~~--~I--~~~~~~ 193 (244)
T KOG4380|consen 120 LINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRIL--VQERLTQDAVAKANQTKEGLPVALDK--HI--LGFDTG 193 (244)
T ss_pred hhhcCCCCccHHHHHHHHHHHhccccCCCHHHHHHHHHHH--HHHHhhhHHHHHhHHHHhcCcceecc--cc--cccCCc
Confidence 56677887788766666666664 3555788888887663 44444455665554433333 23322 23 478889
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 015054 127 SNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRN 162 (414)
Q Consensus 127 ~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g 162 (414)
..+-+-|-+|+.||. |++-|+-..++-+.++.
T Consensus 194 ~~~~~~sA~iLRLi~----i~~LR~~~~~INE~iV~ 225 (244)
T KOG4380|consen 194 DAVLNEAAQILRLLH----IEELRELQTKINEAIVA 225 (244)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 999999999999986 55555554444444433
No 139
>PF04637 Herpes_pp85: Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25); InterPro: IPR006731 This family includes UL25 proteins from human cytomelagovirus (HCMV), as well as U14 proteins from the human herpesviruses HHV-6 and HHV-7. These 85 kDa phosphoproteins appear to act as structural antigens, but their precise function is otherwise unknown.
Probab=24.24 E-value=1.8e+02 Score=32.03 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHcCChhhHHHHHhhH----HHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 85 TVLEYLVAHGSERVIDDIREHS----YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h~----~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
.+|..+|.+|+-..|..+-..+ ++|++|.+|++.- ....+|..++.||.+..=-+.+.+-+.+++.++.++
T Consensus 18 ~~ik~~L~~~~~~~v~~lN~~iPMP~y~Le~Lidpi~k~-----~~~r~r~l~~pVi~~aV~~Nyy~ngk~~l~~m~~~l 92 (501)
T PF04637_consen 18 RFIKDCLTQSSLQHVARLNSCIPMPTYVLEALIDPIIKP-----KASRERDLARPVIRLAVLANYYYNGKGKLRHMRARL 92 (501)
T ss_pred HHHHHHhhhhhHHHHHHHhcCCCCcHHHHHHHhhhhhhh-----hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776654 6777777765543 234555556666655554455555555555554444
Q ss_pred hc
Q 015054 161 RN 162 (414)
Q Consensus 161 ~g 162 (414)
..
T Consensus 93 ~~ 94 (501)
T PF04637_consen 93 RS 94 (501)
T ss_pred HH
Confidence 33
No 140
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=24.10 E-value=1.6e+02 Score=25.76 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhcCh--------hhHHHHHHHHHHHhcc
Q 015054 42 HGTLLADIAQATRNY--------HEYQMIIGVIWKRIND 72 (414)
Q Consensus 42 t~s~L~eIA~~T~n~--------~~y~~Im~vLwKRL~~ 72 (414)
...+..|+|++-|+. -.+..|+..|.+|...
T Consensus 56 ~~~~i~E~ADLlYHllVlL~~~gv~~~dV~~eL~~R~~~ 94 (105)
T PRK00400 56 REELVYEIADLLYHLLVLLAARGISLEDVLAELERREGL 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC
Confidence 477888888888876 2457788888888753
No 141
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=23.80 E-value=4e+02 Score=25.21 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC-hhhHHHHHhhH
Q 015054 41 PHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS-ERVIDDIREHS 106 (414)
Q Consensus 41 Pt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS-ervV~e~r~h~ 106 (414)
.+..+..++.......+.+..+..++.+++....+-+..-.| ..|..||+.+|= ..+|..+-.++
T Consensus 99 i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k-~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 99 IDDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEK-AKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred CCHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHH-HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 444444444444445566778888888888766433433333 358889999994 45666555444
No 142
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=23.74 E-value=1.5e+02 Score=22.09 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHc
Q 015054 46 LADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH 93 (414)
Q Consensus 46 L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN 93 (414)
+.+||+... +...+.+++ .+.+....+.|....+.-.+++||..+
T Consensus 4 ~~~la~~~~~s~~~l~~~f---~~~~~~s~~~~~~~~r~~~a~~~l~~~ 49 (84)
T smart00342 4 LEDLAEALGMSPRHLQRLF---KKETGTTPKQYLRDRRLERARRLLRDT 49 (84)
T ss_pred HHHHHHHhCCCHHHHHHHH---HHHhCcCHHHHHHHHHHHHHHHHHHcC
Confidence 567777664 333333332 233334556777777777888888877
No 143
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=23.70 E-value=2.9e+02 Score=29.50 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcc
Q 015054 62 IIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDF 115 (414)
Q Consensus 62 Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~F 115 (414)
+.+.|.+.|..-.+...++.+--..|+.+|..|+++.-.-++..+..++...-|
T Consensus 343 lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~g~ 396 (398)
T PRK12283 343 VIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMGL 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444445443333444444455666677777766666666666666555444
No 144
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=23.53 E-value=3e+02 Score=21.86 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccC---CCCchhhhHHHHHHHHHHHcCChhhHH
Q 015054 60 QMIIGVIWKRINDT---GKNWRHVYKALTVLEYLVAHGSERVID 100 (414)
Q Consensus 60 ~~Im~vLwKRL~~~---gk~WR~VyKaL~LLEYLLkNGServV~ 100 (414)
..|+.-|...|... ......+.+-|--+||=|..|+.+.+.
T Consensus 38 ~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQ 81 (89)
T PF08542_consen 38 SDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQ 81 (89)
T ss_dssp HHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHH
Confidence 55666666666542 345667888888889999998876654
No 145
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=23.45 E-value=1e+02 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhh
Q 015054 129 VRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (414)
Q Consensus 129 VR~KAK~Il~LL~Dee~LreeR~kA~k~-R~K~ 160 (414)
....++.|.+|+.|++..++..+++.+. +++|
T Consensus 332 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T cd03821 332 VDALAAALRRALELPQRLKAMGENGRALVEERF 364 (375)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 4778889999999998888877777776 5555
No 146
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=23.40 E-value=1.4e+02 Score=27.49 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
.+.+.++.|.+||.|++..++.++++.+..++|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999998888887766665
No 147
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=23.24 E-value=1.5e+02 Score=27.19 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=52.2
Q ss_pred CchHHHHHHHhhcCCCCCC-CHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChh---h
Q 015054 23 VPGIEQKVLDATSNEPWGP-HGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER---V 98 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGP-t~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSer---v 98 (414)
+.+.|.++|||-+.-.-|+ ....|-.|-++.++-..| |.+.-.||-.- +--|-+|||+++-.+ +
T Consensus 22 L~e~e~kmReae~~~~~~~~~~E~lwpIfqlhHQrsRY--iYdlyykR~~I----------S~eLY~~~l~~~yaD~~Li 89 (145)
T KOG3404|consen 22 LEEFEAKMREAETEPHEGKRKTESLWPIFQLHHQRSRY--IYDLYYKRKAI----------SRELYDYCLKEKYADKNLI 89 (145)
T ss_pred HHHHHHHHHHhhcCcccCCCcchhhhhHHHHhhhhhhh--HHHHHHHHHHH----------HHHHHHHHHHcccchHHHH
Confidence 3677999999998766444 455666777776665555 55555555321 224789999998643 4
Q ss_pred HHHHHhhHHHhhhhhcccccCC
Q 015054 99 IDDIREHSYQISTLSDFQYIDS 120 (414)
Q Consensus 99 V~e~r~h~~~Ir~L~~Fqy~D~ 120 (414)
..|-+.-...|=-|+-.|-.|.
T Consensus 90 akWkk~GYE~LCClRCIq~~ds 111 (145)
T KOG3404|consen 90 AKWKKQGYENLCCLRCIQTRDS 111 (145)
T ss_pred HHHhhcCccceeeeeecccccc
Confidence 4454554554444544444443
No 148
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.13 E-value=3.9e+02 Score=29.83 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHH
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYL 90 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYL 90 (414)
-.+|+|+|..-.---....|.+|-... |+.++|.....+|..-|...+..-| |=+|.|++-|
T Consensus 9 ~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR--~l~lqii~el 71 (661)
T KOG2374|consen 9 IGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVR--YLTLQIIDEL 71 (661)
T ss_pred HHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHH--HHHHHHHHHH
Confidence 467888887766666677888887665 5566788888888888776654444 4455555443
No 149
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.02 E-value=1.9e+02 Score=32.18 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHhcCHHHHHH
Q 015054 135 SLVALVNDKERIIE 148 (414)
Q Consensus 135 ~Il~LL~Dee~Lre 148 (414)
.|-..|.+-+.|-+
T Consensus 142 eveNtlkNt~iLlk 155 (574)
T PF07462_consen 142 EVENTLKNTEILLK 155 (574)
T ss_pred HHHHHhhhHHHHHH
Confidence 45556666666543
No 150
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=22.94 E-value=2e+02 Score=31.61 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHhhcC---------CCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc----CCCCchhhhHHHHHHHHHHHcCC
Q 015054 29 KVLDATSN---------EPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIND----TGKNWRHVYKALTVLEYLVAHGS 95 (414)
Q Consensus 29 kVreATsn---------D~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~----~gk~WR~VyKaL~LLEYLLkNGS 95 (414)
.|.++++. ++.||- +.+-|.+.+- .++...||+.|...+.. .--|| |+.|.|+||+
T Consensus 317 Fiv~~f~~~~~~~~ls~~~YGCR--VIQr~lE~c~-~~~~~~i~~ei~~~~~~L~~dQygNY--------VIQHVie~g~ 385 (503)
T KOG1488|consen 317 FIVDFFSGDDNLLELSTHKYGCR--VIQRILEHCS-EDQKQPLMEEIIRNCDQLAQDQYGNY--------VIQHVIEHGS 385 (503)
T ss_pred HHHHHhcCCCceeEeeccCcccH--HHHHHhhcCC-hHhhhHHHHHHHHHHHHHHhhhhhhH--------HHHHHHhcCC
Confidence 55666665 456663 4455555443 34556688888877642 11245 7888888888
Q ss_pred h----hhHHHHHhhH
Q 015054 96 E----RVIDDIREHS 106 (414)
Q Consensus 96 e----rvV~e~r~h~ 106 (414)
+ .+++.+..++
T Consensus 386 ~~~~~~I~~~l~~~l 400 (503)
T KOG1488|consen 386 PYRDTIIIKCLLGNL 400 (503)
T ss_pred hhhhhhHHHHHHhhH
Confidence 6 3555555554
No 151
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=22.76 E-value=3e+02 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhccc
Q 015054 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQ 116 (414)
Q Consensus 59 y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fq 116 (414)
+..|++.|...|.... .=..-++|++|+.-|++.-...|..++.+-...+..|+++.
T Consensus 288 s~~ii~t~ks~leeD~-~G~~sl~~~~i~~~l~k~rN~~vle~vld~~ls~n~L~D~~ 344 (657)
T COG5117 288 SMLIIDTIKSKLEEDC-TGKTSLVATVIDQMLDKERNPLVLEYVLDIPLSDNSLRDEE 344 (657)
T ss_pred HHHHHHHHHHHhcccc-cCceeEEeehHHHHHHhhhCchhHHHHHhccchhhhhhhhh
Confidence 4566666666665421 22246889999999999988888888888777777777663
No 152
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=22.70 E-value=1.2e+02 Score=28.48 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 015054 75 KNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAA 154 (414)
Q Consensus 75 k~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~ 154 (414)
.--+.+++.|.+++.|+.+|...+|.|+.--..+++.--+=- -.||+.+ +..|.|++..++.|+++.
T Consensus 116 ~~a~~~~~~l~~~~~~~~~gn~~~~SD~~vg~~l~~aai~~a---------~~nV~iN----l~~l~D~~~~~~~~~~~~ 182 (184)
T PF04961_consen 116 EIARLCLELLELAEELAKYGNPNAISDVGVGALLARAAIQGA---------LLNVKIN----LKSLKDEEFAEELREEAE 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-CCCHHHHHHHHHHHHHHHHHH---------HHHHHHH----HTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHH---------HHHHHHH----hhhCCCHHHHHHHHHHHh
Confidence 345678888999999999999999999887766654321100 0123322 345677777776666655
Q ss_pred H
Q 015054 155 A 155 (414)
Q Consensus 155 k 155 (414)
+
T Consensus 183 ~ 183 (184)
T PF04961_consen 183 E 183 (184)
T ss_dssp H
T ss_pred h
Confidence 4
No 153
>PF03301 Trp_dioxygenase: Tryptophan 2,3-dioxygenase; InterPro: IPR004981 This is a family of tryptophan 2,3-dioxygenase (1.13.11.11 from EC) enzymes involved in tryptophan metabolism, which catalyse the reaction: L-Tryptophan + O(2) = L-Formylkynurenine ; GO: 0004833 tryptophan 2,3-dioxygenase activity, 0005506 iron ion binding, 0016491 oxidoreductase activity, 0019441 tryptophan catabolic process to kynurenine, 0055114 oxidation-reduction process; PDB: 2NW9_A 2NW7_C 1YW0_C 3BK9_C 3E08_B 2NW8_A 2NOX_A.
Probab=22.67 E-value=5.7e+02 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcccCC
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAG 166 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~~~g 166 (414)
.....++.|+++ ++.+..+|-....+-.+++|...|
T Consensus 280 ~~~~l~e~L~d~---de~~~~WR~~H~~~v~R~iG~k~G 315 (346)
T PF03301_consen 280 DLYQLAEALVDI---DELFQRWRYRHVKMVERMIGSKPG 315 (346)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTTS-S
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456677777776 788999999999999999888543
No 154
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=22.54 E-value=4.3e+02 Score=26.64 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=26.3
Q ss_pred cChhhHHHHHHHHHHHhcc------CCCCchhhhHHHHHHHHHHHc
Q 015054 54 RNYHEYQMIIGVIWKRIND------TGKNWRHVYKALTVLEYLVAH 93 (414)
Q Consensus 54 ~n~~~y~~Im~vLwKRL~~------~gk~WR~VyKaL~LLEYLLkN 93 (414)
.++++|..++-.-+++|.. ..++|-+|-.||++|..|+..
T Consensus 212 l~~~~f~~~~~kWh~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~ 257 (298)
T PF11262_consen 212 LSYEDFRKVLYKWHKRITKALISCLESKEYMHIRNAIIVLKKISPV 257 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh
Confidence 4555665544333333332 556999999999999998853
No 155
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.43 E-value=3.3e+02 Score=22.50 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=34.0
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC
Q 015054 46 LADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS 95 (414)
Q Consensus 46 L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS 95 (414)
-++|.+..-...++..|.+.|..||... .|+--.|.+.- +.+-..|.
T Consensus 3 ~~~i~~~L~~sGe~~~L~~~L~~rL~e~--GW~d~vr~~~r-e~i~~~g~ 49 (86)
T PF10163_consen 3 KAQIQQRLVESGEYERLKELLRQRLIEC--GWRDEVRQLCR-EIIRERGI 49 (86)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHHHT--THHHHHHHHHH-HHHHHH-T
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC--ChHHHHHHHHH-HHHHhhCC
Confidence 4566677777789999999999999887 59877776543 55555443
No 156
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=22.42 E-value=1.7e+02 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~ 156 (414)
++.+.+..|..||.|+++.++..+++.+.
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 78889999999999999888877777655
No 157
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=22.26 E-value=4.8e+02 Score=28.03 Aligned_cols=67 Identities=6% Similarity=0.084 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHhcccccCCchHHH----HHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Q 015054 3 KAFDQTFRDIKRGVNKKVLKVPGIEQ----KVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRIN 71 (414)
Q Consensus 3 kv~~q~~~dlkr~vkn~v~~~s~~E~----kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~ 71 (414)
.+|++....|+..+..+..-++.+.. -.+.|+.+.. .+..+...+.+++.-...+.++.+.|..||.
T Consensus 299 ~idekl~~~L~~at~~a~~vlp~l~~~~~~~~~~a~~~~~--~~~~~~~k~k~L~~~C~~~~~~T~~L~~rLs 369 (445)
T PF10428_consen 299 RIDEKLYLALQNATDLALHVLPQLTSQFSKSARAAAQQRA--IPPSLVQKWKELISKCNSAIDQTERLKSRLS 369 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777665554443444433 3334444444 5666777788888888888999999999985
No 158
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=1.5e+02 Score=32.84 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.4
Q ss_pred CccccCCC
Q 015054 374 NTFDNFTS 381 (414)
Q Consensus 374 ~~f~~~ps 381 (414)
+.|+..++
T Consensus 183 sl~sp~ts 190 (900)
T KOG4425|consen 183 SLFSPLTS 190 (900)
T ss_pred hccCCCcc
Confidence 33444443
No 159
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=22.12 E-value=2.7e+02 Score=22.78 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred hHHHHHHHhhcC-CCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhcc---CCC----Cchh------hhHHHHHHHH
Q 015054 25 GIEQKVLDATSN-EPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRIND---TGK----NWRH------VYKALTVLEY 89 (414)
Q Consensus 25 ~~E~kVreATsn-D~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~---~gk----~WR~------VyKaL~LLEY 89 (414)
..|++|...|+. +.. .....++-=+||.. -.=.++++.|..|.+. .+. .|.. -.+.+.+|.+
T Consensus 6 tl~~Li~~L~~~~~~~---d~~f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~ 82 (104)
T PF00618_consen 6 TLEKLIERLTSSFNSD---DEEFVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKY 82 (104)
T ss_dssp -HHHHHHHHCHC-SS----HHHHHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccC---CHHHHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 468888888877 333 44566666666642 3457899999999942 221 2322 2267777777
Q ss_pred HHHcCChhhHHHHHhhHHHhhhhhcc
Q 015054 90 LVAHGSERVIDDIREHSYQISTLSDF 115 (414)
Q Consensus 90 LLkNGServV~e~r~h~~~Ir~L~~F 115 (414)
.+.+-..+|.++ ..+++.|.+|
T Consensus 83 Wi~~~~~df~~~----~~l~~~l~~F 104 (104)
T PF00618_consen 83 WIENYPDDFRDD----PELLEKLKQF 104 (104)
T ss_dssp HHHHHCCCCHH-----HHHHHHHHHH
T ss_pred HHHHChHhhCCC----HHHHHHHHcC
Confidence 777766654443 3345555544
No 160
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=21.99 E-value=2.5e+02 Score=28.74 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHHcCChhhHHHHHhhHHHhhhhhc
Q 015054 85 TVLEYLVAHGSERVIDDIREHSYQISTLSD 114 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h~~~Ir~L~~ 114 (414)
..|+-+|..|+++.-.-++..+..++.+.-
T Consensus 300 ~~~~~il~~G~~~a~~~a~~~l~~v~~~~g 329 (333)
T PRK00927 300 AYLDEILAEGAEKARAVASKTLKEVREAMG 329 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556666666555555555555544433
No 161
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=21.60 E-value=8.9e+02 Score=24.88 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred hhhHHHHHhhHHHhhhhhc-c----ccc-CCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhh
Q 015054 96 ERVIDDIREHSYQISTLSD-F----QYI-DSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAA-ANRDKF 160 (414)
Q Consensus 96 ervV~e~r~h~~~Ir~L~~-F----qy~-D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~-k~R~K~ 160 (414)
..+-.-+..|...|+.|.. + .++ ..........+...+..|-.+|.+=+.|+.+|.+.. .+|.+.
T Consensus 151 ~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~ 222 (353)
T cd09236 151 ELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKA 222 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777642 1 012 112212334778889999999999999999998853 345544
No 162
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.57 E-value=3.8e+02 Score=27.81 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC-hhhHHHHH
Q 015054 55 NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS-ERVIDDIR 103 (414)
Q Consensus 55 n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS-ervV~e~r 103 (414)
..+++..+..+|.|++......+. +-..++.||+..|= .++|..+.
T Consensus 253 eEDE~E~A~~L~eKK~~~~~~d~k---ek~K~iRfL~rRGFS~D~I~~vL 299 (309)
T PRK14136 253 RETEFERAQAVWRKKFGALPQTPA---ERAKQARFLAARGFSSATIVKLL 299 (309)
T ss_pred cHhHHHHHHHHHHHHhcccCcCHH---HHHHHHHHHHHCCCCHHHHHHHH
Confidence 345667777777777754333332 23456899999994 45665543
No 163
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=21.50 E-value=1.4e+02 Score=32.39 Aligned_cols=10 Identities=0% Similarity=0.302 Sum_probs=5.6
Q ss_pred chHHHhhhcC
Q 015054 291 SYEEAVSESR 300 (414)
Q Consensus 291 s~~~a~s~~~ 300 (414)
.|.+|+..++
T Consensus 136 qfd~vIka~~ 145 (523)
T KOG3837|consen 136 QFDAVIKALS 145 (523)
T ss_pred HHHHHHHHHh
Confidence 4556665554
No 164
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.48 E-value=6.2e+02 Score=29.68 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCc-hhhhHHHHHHHHH
Q 015054 44 TLLADIAQATRNYHEYQMIIGVIWKRINDTGKNW-RHVYKALTVLEYL 90 (414)
Q Consensus 44 s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~W-R~VyKaL~LLEYL 90 (414)
.-++.|+++..- -.+.++..|..|+-.-.+| |+|-+||.=|.-|
T Consensus 188 ~r~q~~~r~~~k---qa~~~~~~we~l~~~~~~w~k~v~~~le~l~el 232 (966)
T KOG4286|consen 188 ERAQNVTRLLRK---QAEEVNTEWEKLNLHSADWQRKIDETLERLQEL 232 (966)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 344555555432 2367788888888766667 6788887666544
No 165
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=21.46 E-value=5.3e+02 Score=24.72 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC---hhhHHHHHhhHHHhhhhhccc--ccCCCCCcccchHHHHHH
Q 015054 60 QMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDIREHSYQISTLSDFQ--YIDSSGRDQGSNVRKKSQ 134 (414)
Q Consensus 60 ~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS---ervV~e~r~h~~~Ir~L~~Fq--y~D~~GkD~G~~VR~KAK 134 (414)
..|+--|.+.|+.. +-..+-.+|.+|..||.-+. +..|...|.-+.++..+++=. ..|.-....+.++++...
T Consensus 79 PqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~ 156 (183)
T PF10274_consen 79 PQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQ 156 (183)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHH
Confidence 44667777778766 45567788888888866543 455555555444443332211 111100123455666666
Q ss_pred HHHHHh
Q 015054 135 SLVALV 140 (414)
Q Consensus 135 ~Il~LL 140 (414)
+.+++|
T Consensus 157 etL~~l 162 (183)
T PF10274_consen 157 ETLELL 162 (183)
T ss_pred HHHHHH
Confidence 666665
No 166
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=21.43 E-value=5e+02 Score=21.90 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=40.1
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCC-Cch--------hhhHHHHHHHHHHHc
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGK-NWR--------HVYKALTVLEYLVAH 93 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk-~WR--------~VyKaL~LLEYLLkN 93 (414)
-..+++|...|+.+.- ....+.++==+||. .-.-.++++.|..|...... +|. .-.+.+.||.+.|.+
T Consensus 8 gtl~~Li~~L~~~~~~--~d~~f~~~Flltyr~F~tp~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~ 85 (127)
T smart00229 8 GTLEKLIEHLTEAFDK--ADPFFVETFLLTYRSFITTQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVEN 85 (127)
T ss_pred ecHHHHHHHHcCCCcC--CCHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3457888888875432 23445555555654 33457888889899875322 231 122445555555555
Q ss_pred CCh
Q 015054 94 GSE 96 (414)
Q Consensus 94 GSe 96 (414)
-..
T Consensus 86 ~~~ 88 (127)
T smart00229 86 YWQ 88 (127)
T ss_pred CCc
Confidence 444
No 167
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=21.24 E-value=1.7e+02 Score=28.94 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHh
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~I 109 (414)
..+.++|+.|...+.+....- --+.||+||++||.-++...+|.+.-.|
T Consensus 146 ~~~~el~~rik~~ied~~~~~----~~~~vl~~l~~n~~~~v~E~~r~~~~~i 194 (217)
T COG1777 146 KQLNELMDRIKEEIEDKDGDM----TERIVLEYLLKNGAADVEETSRRTVLKI 194 (217)
T ss_pred HHHHHHHHHHHHHHhcccchH----HHHHHHHHHHhhhhhHHHHHHhccchhH
Confidence 356677777777765542211 2357899999999555555566665433
No 168
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.21 E-value=6.1e+02 Score=29.52 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.7
Q ss_pred CchhhhHHHHHH
Q 015054 76 NWRHVYKALTVL 87 (414)
Q Consensus 76 ~WR~VyKaL~LL 87 (414)
..|+.|-.|+|=
T Consensus 18 DIR~FFSGL~IP 29 (944)
T KOG4307|consen 18 DIRTFFSGLKIP 29 (944)
T ss_pred HHHHhhcccccC
Confidence 345555555443
No 169
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=20.86 E-value=3e+02 Score=27.68 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=51.3
Q ss_pred HHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHH----------HHHHHHHHcCC----------hhhHHHHHhhHHHh
Q 015054 50 AQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL----------TVLEYLVAHGS----------ERVIDDIREHSYQI 109 (414)
Q Consensus 50 A~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL----------~LLEYLLkNGS----------ervV~e~r~h~~~I 109 (414)
.+.||-...|.+.|+.+.|+|.+.|..-..|-++| .||.++.++|. .=||+++.+|..+-
T Consensus 46 L~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 46 LRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred HHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 45577767789999999999999887666655554 58999999997 23788887775422
Q ss_pred ----hhhhcccccCCCCC
Q 015054 110 ----STLSDFQYIDSSGR 123 (414)
Q Consensus 110 ----r~L~~Fqy~D~~Gk 123 (414)
+.+.+=.++|.+|.
T Consensus 126 d~F~~IfTNPa~~da~G~ 143 (256)
T KOG3120|consen 126 DLFSEIFTNPACVDASGR 143 (256)
T ss_pred HHHHHHhcCCcccCCCCc
Confidence 22222235566553
No 170
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=20.76 E-value=3.2e+02 Score=30.74 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=10.8
Q ss_pred HHHHHHhcccccCCchHHHHH
Q 015054 10 RDIKRGVNKKVLKVPGIEQKV 30 (414)
Q Consensus 10 ~dlkr~vkn~v~~~s~~E~kV 30 (414)
.++++++++.+..+.++|..|
T Consensus 456 ~~~~~~~~~lL~~~~el~eiv 476 (591)
T TIGR01042 456 VPLRTKAKEILQEEEDLNEIV 476 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 171
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.72 E-value=2e+02 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=21.8
Q ss_pred CCcccchHHHHHHHHHHHhcCHHHHHHHHHH
Q 015054 122 GRDQGSNVRKKSQSLVALVNDKERIIEVRQK 152 (414)
Q Consensus 122 GkD~G~~VR~KAK~Il~LL~Dee~LreeR~k 152 (414)
|.|.....+---++|-.||.|+..|+..++-
T Consensus 62 ~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI 92 (187)
T PRK10353 62 QFDPVKVAAMQEEDVERLVQDAGIIRHRGKI 92 (187)
T ss_pred CCCHHHHhCCCHHHHHHHhcCchhHHhHHHH
Confidence 4555444455567888999999988886654
No 172
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.52 E-value=7.9e+02 Score=23.85 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHcCC---hhhHHHHHhhHHHhhhhhc--------ccccCCCCCcccchHHHHHHHHHHHhcCHHHH
Q 015054 78 RHVYKALTVLEYLVAHGS---ERVIDDIREHSYQISTLSD--------FQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146 (414)
Q Consensus 78 R~VyKaL~LLEYLLkNGS---ervV~e~r~h~~~Ir~L~~--------Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~L 146 (414)
..+++.|.-++=.|..+. ..+..-+..|...|+.|.. +.-.+..+. ..+...+.+|-.||..=+.|
T Consensus 80 ~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~---~~~~~~i~~L~~ll~~l~~l 156 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDS---PQVSEVIRQLRELLNKLEEL 156 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SS---GSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccc---cchhHHHHHHHHHHHHHHHH
Confidence 456666655555555443 3566667777777766643 111111111 23356666676777777888
Q ss_pred HHHHHHHHH-HHHhh
Q 015054 147 IEVRQKAAA-NRDKF 160 (414)
Q Consensus 147 reeR~kA~k-~R~K~ 160 (414)
+.+|..... +|.++
T Consensus 157 ~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 157 KKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887544 34433
No 173
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=20.42 E-value=89 Score=22.72 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChhhHHHHHhhHHHhhhhhcc
Q 015054 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDF 115 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h~~~Ir~L~~F 115 (414)
.|.++|-.+|.++++..|++|-.....|..+
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l 36 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLL 36 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHC
Confidence 5788999999999999998886566666655
No 174
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.31 E-value=5.2e+02 Score=29.09 Aligned_cols=7 Identities=29% Similarity=0.060 Sum_probs=2.7
Q ss_pred HHHhhhc
Q 015054 293 EEAVSES 299 (414)
Q Consensus 293 ~~a~s~~ 299 (414)
|-.|-++
T Consensus 364 EllLlkl 370 (620)
T PRK14954 364 ELALLRL 370 (620)
T ss_pred HHHHHHH
Confidence 3333333
No 175
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=20.18 E-value=6.9e+02 Score=25.96 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=28.0
Q ss_pred hhhHHHHHhhHHHh-hhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHH
Q 015054 96 ERVIDDIREHSYQI-STLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERII 147 (414)
Q Consensus 96 ervV~e~r~h~~~I-r~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~Lr 147 (414)
+..+..+++++..| ..|. ++......+++..+.|.++|...+.|+
T Consensus 228 e~e~e~Lke~lqel~~~~e-------~~~~~~ee~~~~l~~~~~fL~~NkDL~ 273 (307)
T PF15112_consen 228 EIEMELLKEKLQELYLQAE-------EQEVLPEEDSKRLEVLKEFLRNNKDLR 273 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hccccchhhhHHHHHHHHHHHhcHHHH
Confidence 45555566665433 3332 223334677888888889888887776
No 176
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.05 E-value=1.2e+02 Score=28.44 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAANR 157 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~R 157 (414)
++..-++.|.+|+.|++.+++..+++.+..
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 456688999999999999888887776654
Done!