Query 015054
Match_columns 414
No_of_seqs 242 out of 475
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 2.1E-55 7.3E-60 403.8 16.2 158 8-165 17-175 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 5.6E-55 1.9E-59 392.0 16.6 148 16-163 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 4.1E-52 1.4E-56 371.1 17.4 143 21-163 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 5.6E-52 1.9E-56 371.8 4.7 143 8-150 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 1.8E-34 6.2E-39 256.5 10.6 117 27-145 13-133 (140)
6 3zyl_A Phosphatidylinositol-bi 99.6 3.6E-15 1.2E-19 144.7 9.9 128 5-136 9-138 (271)
7 3zym_A Phosphatidylinositol-bi 99.6 2.6E-15 9E-20 148.1 8.9 128 5-136 9-138 (310)
8 1hx8_A Synapse-enriched clathr 99.2 4.4E-11 1.5E-15 117.0 9.2 127 6-138 5-146 (299)
9 1x5b_A Signal transducing adap 98.1 2E-05 6.7E-10 71.0 12.2 109 23-141 13-124 (163)
10 1juq_A ADP-ribosylation factor 98.1 3.7E-05 1.3E-09 69.8 12.5 114 23-141 11-127 (171)
11 3ldz_A STAM-1, signal transduc 98.1 4.2E-05 1.4E-09 67.1 12.1 106 24-140 4-112 (140)
12 3rru_A TOM1L1 protein; structu 98.0 5.1E-05 1.7E-09 67.9 12.6 114 24-141 15-129 (152)
13 3zyq_A Hepatocyte growth facto 98.0 4.2E-05 1.5E-09 71.9 12.5 110 22-141 5-117 (226)
14 1mhq_A ADP-ribosylation factor 98.0 6.8E-05 2.3E-09 66.6 12.8 111 26-141 2-115 (148)
15 1elk_A Target of MYB1; superhe 98.0 7.1E-05 2.4E-09 66.8 12.3 113 24-141 15-129 (157)
16 3g2s_A C-terminal fragment of 97.9 0.00013 4.5E-09 65.0 12.9 114 23-141 9-125 (149)
17 1dvp_A HRS, hepatocyte growth 97.8 0.00011 3.9E-09 68.3 11.0 110 24-141 4-114 (220)
18 3iot_A Maltose-binding protein 93.2 0.016 5.5E-07 57.4 0.0 30 4-34 19-51 (449)
19 3iot_A Maltose-binding protein 92.6 0.022 7.5E-07 56.4 0.0 17 130-146 273-290 (449)
20 1sz9_A PCF11 protein; RNA poly 90.8 5.7 0.0002 34.6 13.5 102 42-154 23-136 (144)
21 3d9j_A RNA-binding protein 16; 84.1 20 0.00068 31.1 12.8 119 24-154 5-136 (145)
22 4flb_A Regulation of nuclear P 82.9 20 0.00067 30.0 12.4 96 42-151 20-126 (132)
23 1deq_A Fibrinogen (alpha chain 78.4 16 0.00056 37.1 11.4 14 60-73 91-104 (390)
24 1pk8_A RAT synapsin I; ATP bin 72.7 0.54 1.8E-05 48.3 -1.0 21 385-409 113-133 (422)
25 2ijq_A Hypothetical protein; s 72.5 5.6 0.00019 35.8 5.7 83 55-146 47-134 (161)
26 3fga_B Serine/threonine-protei 71.3 16 0.00055 37.2 9.5 83 54-142 282-366 (403)
27 4fu3_A Regulation of nuclear P 67.6 21 0.0007 29.9 8.0 96 45-151 22-127 (135)
28 2b4j_C PC4 and SFRS1 interacti 56.2 45 0.0016 27.7 7.8 67 58-138 7-77 (98)
29 2npp_B PP2A, B subunit, serine 55.8 67 0.0023 33.1 10.7 83 54-143 315-400 (449)
30 2km4_A Regulator of TY1 transp 54.7 1E+02 0.0034 26.3 11.7 105 42-155 18-133 (142)
31 1t72_A Phosphate transport sys 54.3 80 0.0027 27.9 9.9 85 2-90 6-94 (227)
32 1z9e_A PC4 and SFRS1 interacti 52.6 43 0.0015 29.1 7.4 67 58-138 7-77 (127)
33 3ghg_A Fibrinogen alpha chain; 51.4 18 0.00063 38.2 5.7 29 45-73 72-101 (562)
34 2qk2_A LP04448P; mini spindles 49.2 32 0.0011 30.5 6.4 67 30-98 20-92 (242)
35 2db0_A 253AA long hypothetical 48.3 25 0.00085 33.4 5.5 60 23-94 3-63 (253)
36 3ut4_A CTHE_2751, putative unc 48.0 69 0.0024 28.0 8.0 92 31-140 37-128 (134)
37 2qk2_A LP04448P; mini spindles 47.4 1.5E+02 0.005 26.1 11.0 72 58-140 130-203 (242)
38 3zed_D Capsid protein VP3; vir 38.6 19 0.00065 34.1 3.1 38 57-96 9-46 (242)
39 3p8c_D Wiskott-aldrich syndrom 34.3 34 0.0012 33.3 4.3 58 96-154 118-180 (279)
40 1o5h_A Formiminotetrahydrofola 32.7 1E+02 0.0034 28.7 7.0 61 76-138 124-193 (214)
41 2of3_A ZYG-9; multifunctional 32.6 1.1E+02 0.0036 29.3 7.4 67 59-138 165-232 (266)
42 2qk1_A Protein STU2; STU2P, XM 32.3 2.5E+02 0.0087 25.4 9.8 71 59-140 144-218 (249)
43 1xwm_A PHOU, phosphate uptake 31.4 2.2E+02 0.0074 24.9 8.9 86 1-90 1-90 (217)
44 1jvr_A HTLV-II MA, MA, human T 31.1 79 0.0027 27.4 5.5 13 288-300 77-89 (137)
45 1paq_A Translation initiation 30.9 24 0.00082 31.8 2.4 14 128-141 165-178 (189)
46 1ci4_A Protein (barrier-TO-aut 30.2 24 0.00084 28.9 2.1 45 56-105 20-66 (89)
47 3clj_A Protein NRD1; CTD-inter 29.5 3E+02 0.01 24.4 11.1 53 39-93 18-71 (157)
48 1sum_B Phosphate transport sys 29.5 1.6E+02 0.0056 26.3 7.8 86 1-90 1-90 (235)
49 2rmg_A Urocortin-2; CRF ligand 27.6 28 0.00095 24.4 1.7 26 135-160 10-35 (38)
50 3prh_A Tryptophanyl-tRNA synth 27.0 90 0.0031 31.5 6.1 48 86-145 329-376 (388)
51 2d0t_A Indoleamine 2,3-dioxyge 26.5 1E+02 0.0036 31.1 6.5 69 84-163 273-359 (406)
52 3szr_A Interferon-induced GTP- 26.0 2.7E+02 0.0091 29.1 9.7 28 134-161 570-597 (608)
53 2e8g_A Hypothetical protein PH 25.9 2E+02 0.0068 27.3 7.9 61 81-142 14-84 (241)
54 3lay_A Zinc resistance-associa 24.5 1.6E+02 0.0056 26.5 6.7 34 127-165 113-147 (175)
55 3jui_A Translation initiation 24.2 40 0.0014 30.2 2.6 15 3-17 13-27 (182)
56 2rmh_A Urocortin-3; CRF ligand 24.2 27 0.00092 24.5 1.1 24 135-158 10-33 (38)
57 2qk1_A Protein STU2; STU2P, XM 24.0 94 0.0032 28.4 5.2 64 30-95 21-93 (249)
58 2k85_A Glucocorticoid receptor 23.1 1.3E+02 0.0045 23.5 5.0 46 66-111 19-68 (69)
59 3qhp_A Type 1 capsular polysac 21.9 1E+02 0.0034 24.9 4.5 33 128-160 126-158 (166)
60 2nox_A Tryptophan 2,3-dioxygen 21.4 1.1E+02 0.0038 29.5 5.3 33 130-165 219-251 (281)
61 2el7_A Tryptophanyl-tRNA synth 21.1 1.7E+02 0.0059 28.5 6.7 35 86-120 298-332 (337)
62 4hfx_A Transcription elongatio 20.7 56 0.0019 27.1 2.6 42 41-85 25-75 (97)
63 4fdd_A Transportin-1; heat rep 20.1 2.1E+02 0.007 30.2 7.5 143 1-156 76-238 (852)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=2.1e-55 Score=403.79 Aligned_cols=158 Identities=39% Similarity=0.806 Sum_probs=133.7
Q ss_pred HHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCCchhhhHHHHH
Q 015054 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTV 86 (414)
Q Consensus 8 ~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~L 86 (414)
.++.++|+|+|+|++||++|++|+||||||+|||++++|+|||++||++++|.+||++||||| ++++++||||||||+|
T Consensus 17 ~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~L 96 (176)
T 1xgw_A 17 KVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLL 96 (176)
T ss_dssp -----------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999995 7889999999999999
Q ss_pred HHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcccC
Q 015054 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTA 165 (414)
Q Consensus 87 LEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~~~ 165 (414)
|||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+++
T Consensus 97 LeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 97 LAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988753
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=5.6e-55 Score=392.04 Aligned_cols=148 Identities=42% Similarity=0.747 Sum_probs=133.4
Q ss_pred hcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC-CCCchhhhHHHHHHHHHHHcC
Q 015054 16 VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT-GKNWRHVYKALTVLEYLVAHG 94 (414)
Q Consensus 16 vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~-gk~WR~VyKaL~LLEYLLkNG 94 (414)
+.|+|++||++|++|+||||||+|||++++|+|||++||++.+|.+||++|||||+++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 6799999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred ChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcc
Q 015054 95 SERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (414)
Q Consensus 95 ServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~ 163 (414)
||+||+|+|+|+++|+.|++|+|+|++|+|+|.+||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=4.1e-52 Score=371.12 Aligned_cols=143 Identities=49% Similarity=0.867 Sum_probs=140.4
Q ss_pred cCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHH
Q 015054 21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (414)
Q Consensus 21 ~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~ 100 (414)
.+||++|++|++|||||+|||++++|++||++||++.+|.+||++|||||++++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcc
Q 015054 101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (414)
Q Consensus 101 e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~ 163 (414)
|+++|++.|+.|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.+.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999764
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=5.6e-52 Score=371.77 Aligned_cols=143 Identities=48% Similarity=0.864 Sum_probs=139.6
Q ss_pred HHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHH
Q 015054 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVL 87 (414)
Q Consensus 8 ~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LL 87 (414)
+++.|+|+|+|+|++||++|++|++|||||+|||++++|++||++||++.+|.+||++|||||++++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHHHHHHH
Q 015054 88 EYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (414)
Q Consensus 88 EYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~LreeR 150 (414)
||||+||||+||+|+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||.|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999886
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=1.8e-34 Score=256.47 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 27 E~kVreATsnD~WGPt~s~L~eIA~~T~n~--~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
+.+|++|||||+|||++++|+|||++||++ +.|.+||++||+||+++ .|+++||||+||+|||+||+++|+.|+|+
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 679999999999999999999999999986 56899999999999997 58899999999999999999999999999
Q ss_pred hHHHhhhhhcccccCC--CCCcccchHHHHHHHHHHHhcCHHH
Q 015054 105 HSYQISTLSDFQYIDS--SGRDQGSNVRKKSQSLVALVNDKER 145 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~--~GkD~G~~VR~KAK~Il~LL~Dee~ 145 (414)
|+++|++|++|+|+++ +|.|+|++||++|++|++||.|++.
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999976 8999999999999999999999764
No 6
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.58 E-value=3.6e-15 Score=144.68 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=109.7
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhHH
Q 015054 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (414)
Q Consensus 5 ~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~-~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (414)
.+|++.|--..+|+.|.. +++|+.|+.||+++.|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~Ka 85 (271)
T 3zyl_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (271)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHH
Confidence 578888888899999988 9999999999999999999999999999999875 47999999999998 4699999999
Q ss_pred HHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccC-CCCCcccchHHHHHHHH
Q 015054 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID-SSGRDQGSNVRKKSQSL 136 (414)
Q Consensus 84 L~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D-~~GkD~G~~VR~KAK~I 136 (414)
|+||++||+.|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999988874 55888875432 14556777899988877
No 7
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.58 E-value=2.6e-15 Score=148.07 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhHH
Q 015054 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (414)
Q Consensus 5 ~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~-~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (414)
.+|++.|=-.++|+.|.+ +++|+.|+.||+++.|+|..+.+.+|..+|++.. .+..||..|++||. .++|+++|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~Ka 85 (310)
T 3zym_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (310)
T ss_dssp ---CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHH
Confidence 467788877889998988 9999999999999999999999999999999875 47899999999998 3699999999
Q ss_pred HHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCC-CCCcccchHHHHHHHH
Q 015054 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSL 136 (414)
Q Consensus 84 L~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~-~GkD~G~~VR~KAK~I 136 (414)
|+||++||+.|++.|+.+++.|.. |-.|.+|..... .|.+++.-||.-|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccHHHHHHHHHH
Confidence 999999999999999999988875 448888753221 4567778899999877
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.18 E-value=4.4e-11 Score=117.04 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=89.5
Q ss_pred hhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCCchhhhHHH
Q 015054 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKAL 84 (414)
Q Consensus 6 ~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~-~y~~Im~vLwKRL~~~gk~WR~VyKaL 84 (414)
.|++++.-..+|+-.. -+++|+.|+.||+.|.|+|..+.+.+|..+|++.. ....|+..|++|+.. ++|.+++|||
T Consensus 5 ~~~~~~~~~a~k~~~~-~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~--~~w~va~K~L 81 (299)
T 1hx8_A 5 GQTINDRLLAARHSLA-GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQN--ANWVVVYKSL 81 (299)
T ss_dssp ------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTC--SSHHHHHHHH
T ss_pred hHHHHHHHHHHhhccc-hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccC--CcHHHHHHHH
Confidence 4566665556654332 36899999999999999999999999999998873 467899999999644 4999999999
Q ss_pred HHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCC--------------CCCcccchHHHHHHHHHH
Q 015054 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS--------------SGRDQGSNVRKKSQSLVA 138 (414)
Q Consensus 85 ~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~--------------~GkD~G~~VR~KAK~Il~ 138 (414)
+||..||+.|++.|+.++..+.. |-.|.+| .|. .|.|++..||.-|+-|.+
T Consensus 82 ivlH~llreG~~~~~~~l~~~~~-~l~l~~f--~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 82 ITTHHLMAYGNERFMQYLASSNS-TFNLSSF--LDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTC-CCCCTTC--CCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCc-ccchhhh--hcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999966533 3355566 222 223567788888876543
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=98.15 E-value=2e-05 Score=71.02 Aligned_cols=109 Identities=20% Similarity=0.153 Sum_probs=78.4
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
-++.+.+|.+||+...-.+.-.+..+|++.-. +...-.+.+..|.|||+.. +-...+-||+|||.|++||...|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 47889999999997666666677888888754 3356789999999999864 45567789999999999999888877
Q ss_pred HHh--hHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 102 IRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 102 ~r~--h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+-. -+..|..|-. .+ ....|++|+..|++...
T Consensus 91 vas~~Fl~el~~l~~-----~~---~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 91 VCSRDFATEVRAVIK-----NK---AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HTSHHHHHHHHHHHH-----TT---CCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHc-----cC---CCHHHHHHHHHHHHHHH
Confidence 743 2322222211 11 12478998888776543
No 10
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=98.07 E-value=3.7e-05 Score=69.81 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
.|+++.+|..||+...-.+.-.+..+|++.-. +...-.+.+..|.|||+.. +-...+-||+|||.|++||...|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 47889999999997666666677888888764 3456788999999999864 67788999999999999999988888
Q ss_pred HHhh--HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 102 ~r~h--~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+-+. +..|..|-.=.| .|......||+|+.+|++-..
T Consensus 89 vas~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKY---LGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 7443 332222211111 133345789999888877654
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=98.05 E-value=4.2e-05 Score=67.14 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=78.8
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
++.+.+|.+||+...-.+.-.+..+|++.-.. ...-.+.|..|.|||... +-...+-||+|||.|++||-.+|-.++
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 78899999999976666666788889988654 345789999999999864 566789999999999999988888776
Q ss_pred --HhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHh
Q 015054 103 --REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 103 --r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
++-+..|..|-. .....|++|+..++.-.
T Consensus 82 as~~Fl~el~~l~~---------~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 82 CSRDFASEVSNVLN---------KGHPKVCEKLKALMVEW 112 (140)
T ss_dssp SSHHHHHHHHHHHH---------HSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHH
Confidence 343433322221 02247888887777544
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=98.04 E-value=5.1e-05 Score=67.89 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=80.5
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
|+++.+|..||+...-.+.=.+.-||++.-. +...-.+.|..|.|||. .+++-+.++-||+|||-|++||-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8899999999996555555567888888754 34567899999999997 445777777899999999999999999988
Q ss_pred HhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 103 r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
-..-++-+.|... +.... ..-..|++|+..|+.-..
T Consensus 94 ask~Fl~e~L~kl--~~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKL--LNPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGG--GSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHH--hcCCC-CCcHHHHHHHHHHHHHHH
Confidence 5433221112222 11111 233478888877776543
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=98.03 E-value=4.2e-05 Score=71.92 Aligned_cols=110 Identities=24% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHH
Q 015054 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (414)
Q Consensus 22 ~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~ 100 (414)
.-+++|.+|.+||+...-.+.-.+..+|++.-... ..=.+.|..|.|||+. ++-..++-||+|||.|++|+-.+|-.
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44789999999999877777778888888886543 3468999999999984 47778999999999999999988888
Q ss_pred HHH--hhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 101 DIR--EHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 101 e~r--~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
++- +-+..|..|- + ......|++|+.+|+....
T Consensus 83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHH
Confidence 873 3333333221 1 1233678999888877543
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=98.02 E-value=6.8e-05 Score=66.56 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=80.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 015054 26 IEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (414)
Q Consensus 26 ~E~kVreATsnD~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~ 104 (414)
.+.+|..||+...-.+.-.+..+|++.-. +...-.+.|..|.|||+. ++-...+-||+|||.|++||..+|-.++-+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 57899999996655666677888888754 345678999999999975 477889999999999999999999888843
Q ss_pred hHHHhhhhhcccccCC--CCCcccchHHHHHHHHHHHhc
Q 015054 105 HSYQISTLSDFQYIDS--SGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 105 h~~~Ir~L~~Fqy~D~--~GkD~G~~VR~KAK~Il~LL~ 141 (414)
. ..+..|... +.. .|......|++|+..|+....
T Consensus 80 ~-~Fl~eL~kl--~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 F-RFLNELIKV--LSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp H-HHHHHHHHT--TCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHH--HccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3 223333321 111 133345789998887776553
No 15
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.98 E-value=7.1e-05 Score=66.85 Aligned_cols=113 Identities=21% Similarity=0.177 Sum_probs=80.2
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
|+++.+|.+||+...-.+.-.+..+|++.-. +...-.+.+..|.|||+.. ++...++-||+|||.|++||-.+|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 5889999999997666667777888888754 3356789999999999742 4677889999999999999999988877
Q ss_pred HhhHHHhhh-hhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 103 REHSYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 103 r~h~~~Ir~-L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
-+.- .+.. |... +..++ +....|++|+.++++...
T Consensus 94 a~~~-fl~e~Lvk~--~~~k~-~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 94 ASQD-FVESVLVRT--ILPKN-NPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp TSHH-HHHHHTHHH--HSTTT-CCCHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHH--hccCC-CCcHHHHHHHHHHHHHHH
Confidence 4321 1222 2111 11111 233678888877776554
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.92 E-value=0.00013 Score=64.97 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHH
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e 101 (414)
-++++.+|..||+...-.+.-.+..+|++.-.. ...-.+.|..|.|||+. ++-...+-||+|||.|++||-.+|-.+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 378899999999987777777889999998654 34578899999999984 478889999999999999999999888
Q ss_pred HHhh--HHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 102 ~r~h--~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
+-.. +..|..|-.=+|. |......|++|+..|+.-..
T Consensus 87 ias~~Fl~eL~kl~~~k~~---~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKYL---GSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HTSHHHHHHHHHHHCTTTT---GGGSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHccccc---CCCCCHHHHHHHHHHHHHHH
Confidence 7432 3222222110111 22345688999888876553
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.81 E-value=0.00011 Score=68.35 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=78.6
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHH
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~ 102 (414)
|.++.+|.+||+...-.+.-.++.+|++.-... ..-.+.|..|.|||... +-...+-||+|||.|++|+-..|-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~--n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSP--NPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 568999999999766666667888888886543 35789999999999864 678899999999999999988887776
Q ss_pred HhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhc
Q 015054 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (414)
Q Consensus 103 r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~ 141 (414)
-+.- .+..|..+ +.. .....|++|+.+|++...
T Consensus 82 a~~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKE-NCEMFSSF--LES---TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHH-HHHHHHHH--HHH---CSCHHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHH--hcC---CCcHHHHHHHHHHHHHHH
Confidence 3321 22233222 110 124578888877765543
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.18 E-value=0.016 Score=57.45 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHhcc---cccCCchHHHHHHHhh
Q 015054 4 AFDQTFRDIKRGVNK---KVLKVPGIEQKVLDAT 34 (414)
Q Consensus 4 v~~q~~~dlkr~vkn---~v~~~s~~E~kVreAT 34 (414)
+++..+.++.++ .+ .+..+..++.++..+.
T Consensus 19 ~~~~~~~~F~~~-~gi~V~~~~~~~~~~kl~~~~ 51 (449)
T 3iot_A 19 GLAEVGKKFEKD-TGIKVTVEHPDKLEEKFPQVA 51 (449)
T ss_dssp HHHHHHHHHHHH-HSCCEEEECCTTHHHHHHHHG
T ss_pred HHHHHHHHHhhc-cCCEEEEEecHHHHHHHHHHh
Confidence 445555555554 22 1222345555555443
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=92.56 E-value=0.022 Score=56.44 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=9.9
Q ss_pred HHHHHHHHH-HhcCHHHH
Q 015054 130 RKKSQSLVA-LVNDKERI 146 (414)
Q Consensus 130 R~KAK~Il~-LL~Dee~L 146 (414)
.+.|.++|+ +|..++..
T Consensus 273 ~e~A~~fl~~~l~s~e~~ 290 (449)
T 3iot_A 273 KELAKEFLENYLLTDEGL 290 (449)
T ss_dssp HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 456666664 66666543
No 20
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=90.78 E-value=5.7 Score=34.58 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhh-cccccC
Q 015054 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLS-DFQYID 119 (414)
Q Consensus 42 t~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~-~Fqy~D 119 (414)
+...++.|..++ .|.+....|+++|.++|... .-.+.+=+|-||+-+|+|....++..|-.++..+ +. -|...|
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~--f~~~~~~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNL--YKRTYLLVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHH--HHHHHHTSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHhCC
Confidence 444444444443 46778999999999999764 3467788999999999998778888777665432 22 222222
Q ss_pred CCCCcccchHHHHHHHHHHHhc----------CHHHHHHHHHHHH
Q 015054 120 SSGRDQGSNVRKKSQSLVALVN----------DKERIIEVRQKAA 154 (414)
Q Consensus 120 ~~GkD~G~~VR~KAK~Il~LL~----------Dee~LreeR~kA~ 154 (414)
..+|.|..+|+.+=. ..+.|++-|....
T Consensus 99 -------~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 99 -------NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp -------HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHH
Confidence 488999999988765 4477776665433
No 21
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=84.10 E-value=20 Score=31.06 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=80.5
Q ss_pred chHHHHHHHhhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCCh------
Q 015054 24 PGIEQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE------ 96 (414)
Q Consensus 24 s~~E~kVreATsnD~WGPt~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSe------ 96 (414)
.+.|.++.+-+...+ +-+...++.|..++ .+...+..|+.+|.++|.... =.+.+=.|-|++=+++|.-.
T Consensus 5 ~~f~~~L~~L~~~k~-~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~ 81 (145)
T 3d9j_A 5 KTFNSELYSLNDYKP-PISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEK 81 (145)
T ss_dssp HHHHHHHHGGGGSCS-SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCcc
Confidence 344555555554442 26777777777765 677889999999999997753 35678899999999999665
Q ss_pred -hhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHH-----hcCHHHHHHHHHHHH
Q 015054 97 -RVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVAL-----VNDKERIIEVRQKAA 154 (414)
Q Consensus 97 -rvV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~L-----L~Dee~LreeR~kA~ 154 (414)
.|+..|...+.. .+.. -| . ....+|.+..+|+++ +..++.|++.|+...
T Consensus 82 ~~f~~~F~~~L~~--~f~~-~~--~----~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 82 DVFAPRFSNNIIS--TFQN-LY--R----CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp CSHHHHHHHHHHH--HHHH-HT--S----SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH--HHHH-HH--h----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 577666544331 2211 11 1 125788999999887 567788888776654
No 22
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=82.93 E-value=20 Score=30.00 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC----hhhHHHHHhhHHHhhhhhccc
Q 015054 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS----ERVIDDIREHSYQISTLSDFQ 116 (414)
Q Consensus 42 t~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS----ervV~e~r~h~~~Ir~L~~Fq 116 (414)
+-.-...++.+. ++.+....|+++|.++|..... .+-+-.|-|++-+|+|.. ..++..|...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~--~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAY--PHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 334455566655 5677899999999999987643 456788999999999964 34555554443221 22
Q ss_pred cc-CCCCCcccchHHHHHHHHHHHh-----cCHHHHHHHHH
Q 015054 117 YI-DSSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQ 151 (414)
Q Consensus 117 y~-D~~GkD~G~~VR~KAK~Il~LL-----~Dee~LreeR~ 151 (414)
.+ + ..+|++..+|+++- .+++.|++-|+
T Consensus 93 ~~~~-------~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~ 126 (132)
T 4flb_A 93 LVKD-------PSVSKSVERIFKIWEDRNVYPEEMIVALRE 126 (132)
T ss_dssp TTCS-------TTTHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HhCC-------HHHHHHHHHHHHHhccCCCcCHHHHHHHHH
Confidence 22 2 24678888888775 45677766554
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.36 E-value=16 Score=37.09 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhccC
Q 015054 60 QMIIGVIWKRINDT 73 (414)
Q Consensus 60 ~~Im~vLwKRL~~~ 73 (414)
..|+++|.+++...
T Consensus 91 ~~~~~~lk~~~~q~ 104 (390)
T 1deq_A 91 KNIVELMRGDFAKA 104 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 44555555555443
No 24
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=72.72 E-value=0.54 Score=48.31 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=15.2
Q ss_pred CCCCCCccCCCCCCCCccccccccc
Q 015054 385 EAVAPDEFDPRGSVQAPHWTTCLNK 409 (414)
Q Consensus 385 ~~~~~dk~dPr~~~k~~hW~k~~~~ 409 (414)
+.+.+..||. .++-|.|+|-.
T Consensus 113 ~~k~LLVid~----~~~dw~K~f~~ 133 (422)
T 1pk8_A 113 AARVLLVIDE----PHTDWAKYFKG 133 (422)
T ss_dssp CCEEEEEECC----TTSCHHHHHTT
T ss_pred cceEEEEecc----ccchHHHHhcc
Confidence 3666778873 47889998864
No 25
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=72.50 E-value=5.6 Score=35.77 Aligned_cols=83 Identities=7% Similarity=0.115 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHHHhccCCCCchhhhHHHHH----HHHHHHcCChhhHHH-HHhhHHHhhhhhcccccCCCCCcccchH
Q 015054 55 NYHEYQMIIGVIWKRINDTGKNWRHVYKALTV----LEYLVAHGSERVIDD-IREHSYQISTLSDFQYIDSSGRDQGSNV 129 (414)
Q Consensus 55 n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~L----LEYLLkNGServV~e-~r~h~~~Ir~L~~Fqy~D~~GkD~G~~V 129 (414)
.+-+|.+|++-+|+.......+ |.++++|+. --|-+.+|..+-..- ++.-+..|+.+. ....|+.|
T Consensus 47 ~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~--------~~~~GIDv 117 (161)
T 2ijq_A 47 EFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP--------NDYYGVDL 117 (161)
T ss_dssp CHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC--------TTGGGBCH
T ss_pred CchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC--------CccCCcCH
Confidence 4567789999999988654323 777777776 345567787654333 344344443332 13467778
Q ss_pred HHHHHHHHHHhcCHHHH
Q 015054 130 RKKSQSLVALVNDKERI 146 (414)
Q Consensus 130 R~KAK~Il~LL~Dee~L 146 (414)
......|-++|.|++.+
T Consensus 118 ~~L~~~~~~~l~dp~~~ 134 (161)
T 2ijq_A 118 LDVRTTVTNALSDPSAL 134 (161)
T ss_dssp HHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHhhCCccC
Confidence 77777777777766544
No 26
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=71.26 E-value=16 Score=37.22 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=55.9
Q ss_pred cChhhHHHHHHHHHHHhcc--CCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHH
Q 015054 54 RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRK 131 (414)
Q Consensus 54 ~n~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~ 131 (414)
-+..+|..||.-|.++|.. ...+..+.-.||.+. ..+.++.-+.+|...|=.+---......-..|...||.
T Consensus 282 ~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------nNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~ 355 (403)
T 3fga_B 282 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 355 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------GCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3678899999999999874 444788888888765 34666666666665443221101111123458899999
Q ss_pred HHHHHHHHhcC
Q 015054 132 KSQSLVALVND 142 (414)
Q Consensus 132 KAK~Il~LL~D 142 (414)
.|.+++++|.+
T Consensus 356 l~~~vlk~l~e 366 (403)
T 3fga_B 356 LIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999954
No 27
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=67.65 E-value=21 Score=29.86 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=60.7
Q ss_pred HHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC---hhhHHHHHhhHHHh-hhhhcccccC
Q 015054 45 LLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDIREHSYQI-STLSDFQYID 119 (414)
Q Consensus 45 ~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS---ervV~e~r~h~~~I-r~L~~Fqy~D 119 (414)
-+..++.+. ++......|+++|.++|.....+ +-+-.|-|++-+|.|.. ..++..|..++..| ..+ |.-.+
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~--~~~~~ 97 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHV--AREAD 97 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHcCC
Confidence 345555554 56777899999999999875443 45678889999988853 34666666554322 211 11122
Q ss_pred CCCCcccchHHHHHHHHHHHh-----cCHHHHHHHHH
Q 015054 120 SSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQ 151 (414)
Q Consensus 120 ~~GkD~G~~VR~KAK~Il~LL-----~Dee~LreeR~ 151 (414)
..+|++..+|+++- .+++.|++-|.
T Consensus 98 -------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 98 -------EGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp -------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 23567778888764 45666665443
No 28
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=56.21 E-value=45 Score=27.70 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHc-CChhhHHHHHhhHH---HhhhhhcccccCCCCCcccchHHHHH
Q 015054 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSERVIDDIREHSY---QISTLSDFQYIDSSGRDQGSNVRKKS 133 (414)
Q Consensus 58 ~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN-GServV~e~r~h~~---~Ir~L~~Fqy~D~~GkD~G~~VR~KA 133 (414)
.+.++-..|...|.-.+- .|-|||.+||-|-.= .... -++.|-. .|+.|++|.- ...||++|
T Consensus 7 ~l~~L~~~ik~~L~~~~~---Dv~kcl~~L~~l~~l~~T~~---mL~rnpe~V~t~kklRry~g--------~q~Ir~kA 72 (98)
T 2b4j_C 7 RLQRIHAEIKNSLKIDNL---DVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKV--------SQVIMEKS 72 (98)
T ss_dssp HHHHHHHHHHHHTCTTSC---CHHHHHHHHHHHHTCCCCHH---HHHTTHHHHHHHHHHTTCTT--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCC---CHHHHHHHHHHHhcccccHH---HHhhChHHHHHHHHHHHHhc--------hHHHHHHH
Confidence 456677777777765432 378999998887543 2211 2344444 5556666632 15677777
Q ss_pred HHHHH
Q 015054 134 QSLVA 138 (414)
Q Consensus 134 K~Il~ 138 (414)
..|.+
T Consensus 73 ~~iY~ 77 (98)
T 2b4j_C 73 TMLYN 77 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 29
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=55.75 E-value=67 Score=33.09 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=54.1
Q ss_pred cChhhHHHHHHHHHHHhcc--CCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhhhccccc-CCCCCcccchHH
Q 015054 54 RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYI-DSSGRDQGSNVR 130 (414)
Q Consensus 54 ~n~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~-D~~GkD~G~~VR 130 (414)
-+..+|..||.-|.++|.. ...+..+.-.||.++. .+.++.-+.+|...|=.+ -|... ...-..|...||
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPi-i~p~L~~~s~~HWn~~V~ 387 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPI-MFPSLYRNSKTHWNKTIH 387 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHH-HHHHHTSCTTCCSSTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC------CHHHHHHHHhchhhhHHh-hHHHHHHHHHHhcCHHHH
Confidence 3778899999999998864 4457888888876652 345555556565544211 11111 112345788999
Q ss_pred HHHHHHHHHhcCH
Q 015054 131 KKSQSLVALVNDK 143 (414)
Q Consensus 131 ~KAK~Il~LL~De 143 (414)
..|.+++.+|.+=
T Consensus 388 ~la~~vlk~l~e~ 400 (449)
T 2npp_B 388 GLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 30
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=54.74 E-value=1e+02 Score=26.30 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC----hhhHHHHHhhHH-Hhhhhhcc
Q 015054 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS----ERVIDDIREHSY-QISTLSDF 115 (414)
Q Consensus 42 t~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS----ervV~e~r~h~~-~Ir~L~~F 115 (414)
+..-++.++... ++......|++++.+.|......-++.+--|-|+.-+|.|+. ..|+..|...+. ++..+ |
T Consensus 18 sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~--~ 95 (142)
T 2km4_A 18 SQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRI--N 95 (142)
T ss_dssp CHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH--H
Confidence 444566667766 567789999999999998764444555666777777776643 357777765543 22222 1
Q ss_pred cccCCCCCcccchHHHHHHHHHHHh-----cCHHHHHHHHHHHHH
Q 015054 116 QYIDSSGRDQGSNVRKKSQSLVALV-----NDKERIIEVRQKAAA 155 (414)
Q Consensus 116 qy~D~~GkD~G~~VR~KAK~Il~LL-----~Dee~LreeR~kA~k 155 (414)
... ...++.++.+|+++- .+.+.|.+-|.....
T Consensus 96 ~~~-------~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~ 133 (142)
T 2km4_A 96 QEF-------PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAA 133 (142)
T ss_dssp HHS-------CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcC-------CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHh
Confidence 112 357889999999885 456666666554433
No 31
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=54.30 E-value=80 Score=27.89 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=48.1
Q ss_pred hhhhhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhccC---CCCc
Q 015054 2 KKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDT---GKNW 77 (414)
Q Consensus 2 ~kv~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~-y~~Im~vLwKRL~~~---gk~W 77 (414)
.+.|++.+..+++.+..+...+..+=..+.+|..+.+ ..+..+|.+.--..+. +..|...+.+.|... ...-
T Consensus 6 ~~~~~~~l~~~~~~l~~M~~~v~~~l~~a~~al~~~d----~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~ 81 (227)
T 1t72_A 6 GMKLFKELEETKEQVIKMAKLVQEAIDKATEALNKQN----VELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDL 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 5678888999988887755333333334445554433 3455666655444444 466777777766431 2234
Q ss_pred hhhhHHHHHHHHH
Q 015054 78 RHVYKALTVLEYL 90 (414)
Q Consensus 78 R~VyKaL~LLEYL 90 (414)
|.+.-.|.++.+|
T Consensus 82 ~~~~~~l~i~~~l 94 (227)
T 1t72_A 82 RMIMGIYKIVSDL 94 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 32
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=52.61 E-value=43 Score=29.12 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHc-CChhhHHHHHhhHH---HhhhhhcccccCCCCCcccchHHHHH
Q 015054 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSERVIDDIREHSY---QISTLSDFQYIDSSGRDQGSNVRKKS 133 (414)
Q Consensus 58 ~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN-GServV~e~r~h~~---~Ir~L~~Fqy~D~~GkD~G~~VR~KA 133 (414)
.+..+-..|...|.-.+- .|.|||.+|+-|-.= -... -++.|-. .|+.|++|.-- ..||++|
T Consensus 7 ~L~~L~~~Ik~~L~v~~~---Dv~kCl~~Leel~~l~vT~~---mL~Rnpe~V~TlkklRrY~gn--------q~Ir~kA 72 (127)
T 1z9e_A 7 RLQRIHAEIKNSLKIDNL---DVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKVS--------QVIMEKS 72 (127)
T ss_dssp HHHHHHHHHHHHTCGGGC---CHHHHHHHHHHHHHSCCCHH---HHGGGHHHHHHHHHHTTCTTC--------SSHHHHH
T ss_pred HHHHHHHHHHHHHccCCC---CHHHHHHHHHHHccccccHH---HHhhChHHHHHHHHHHHHhcc--------HHHHHHH
Confidence 466677777777765422 378999998887653 2221 2355544 55555566322 6889998
Q ss_pred HHHHH
Q 015054 134 QSLVA 138 (414)
Q Consensus 134 K~Il~ 138 (414)
..|..
T Consensus 73 ~~iY~ 77 (127)
T 1z9e_A 73 TMLYN 77 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.35 E-value=18 Score=38.19 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHHHHhcChhh-HHHHHHHHHHHhccC
Q 015054 45 LLADIAQATRNYHE-YQMIIGVIWKRINDT 73 (414)
Q Consensus 45 ~L~eIA~~T~n~~~-y~~Im~vLwKRL~~~ 73 (414)
+|.+|.+...+.+. |..||++|.++|...
T Consensus 72 qLEdlsKnsKdseqy~k~~~E~Lr~rq~q~ 101 (562)
T 3ghg_A 72 SLFEYQKNNKDSHSLTTNIMEILRGDFSSA 101 (562)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Confidence 34455443333333 466777766666543
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.16 E-value=32 Score=30.46 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=45.0
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhc-----ChhhHHHHHHHHHHHhc-cCCCCchhhhHHHHHHHHHHHcCChhh
Q 015054 30 VLDATSNEPWGPHGTLLADIAQATR-----NYHEYQMIIGVIWKRIN-DTGKNWRHVYKALTVLEYLVAHGSERV 98 (414)
Q Consensus 30 VreATsnD~WGPt~s~L~eIA~~T~-----n~~~y~~Im~vLwKRL~-~~gk~WR~VyKaL~LLEYLLkNGServ 98 (414)
+.+..++.+|----..+..|+.+.. ...+|.+|+..|.++|. +. +......+|..|..|+......|
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhH
Confidence 4445556677554444444444422 13467899999999995 64 77788899999999997655443
No 35
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=48.27 E-value=25 Score=33.36 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=40.8
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHH-HHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcC
Q 015054 23 VPGIEQKVLDATSNEPWGPHGTLLAD-IAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG 94 (414)
Q Consensus 23 ~s~~E~kVreATsnD~WGPt~s~L~e-IA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNG 94 (414)
+.+-|..||||..+ |.++++ |++++|+. +|++.|.+-|.++ -|...-.||+||--+.+.=
T Consensus 3 me~~e~d~realat------ge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~ 63 (253)
T 2db0_A 3 MEEEEFDIREALAN------GEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTR 63 (253)
T ss_dssp ------CHHHHHHT------TCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTC
T ss_pred chHhhhhHHHHHhh------hhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHh
Confidence 34568899999854 556776 57888995 6667777777776 7999999999987665443
No 36
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=48.00 E-value=69 Score=27.95 Aligned_cols=92 Identities=9% Similarity=0.100 Sum_probs=64.3
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhh
Q 015054 31 LDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQIS 110 (414)
Q Consensus 31 reATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir 110 (414)
.+=.-+=+|.....+..-++.. . ..++..|++-|.+....|. .-||+||+.|=+.+.+..++.-+..|-
T Consensus 37 L~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~-----ywil~~lv~~~~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 37 LKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWK-----YWVIKLMIPYLIYPNKQLVKSELERLS 105 (134)
T ss_dssp HGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHH-----HHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444577898877766666642 2 3677777777777666673 348999999999988888877655442
Q ss_pred hhhcccccCCCCCcccchHHHHHHHHHHHh
Q 015054 111 TLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 111 ~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
. .+.+.+....|.+.|++|++-.
T Consensus 106 ~-------~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 106 S-------LEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp T-------CCCSSGGGHHHHHHHHHHHHHH
T ss_pred h-------CCCcchHHHHHHHHHHHHHHHH
Confidence 2 2345667778889999988643
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=47.36 E-value=1.5e+02 Score=26.07 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHc-CChh-hHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHH
Q 015054 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSER-VIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQS 135 (414)
Q Consensus 58 ~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN-GSer-vV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~ 135 (414)
.+..||..|...|.++ +|+.-.-+|.+|.-++.+ +.+. +...+..-+..|..+- .|....||..|..
T Consensus 130 ~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~ 198 (242)
T 2qk2_A 130 SLEAQQESIVESLSNK--NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL---------NEPDPTVRDSSAE 198 (242)
T ss_dssp CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH---------TSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh---------cCCChHHHHHHHH
Confidence 4678889998888754 899999999999987665 4442 3444443333222221 1344578877777
Q ss_pred HHHHh
Q 015054 136 LVALV 140 (414)
Q Consensus 136 Il~LL 140 (414)
.+..|
T Consensus 199 ~l~~l 203 (242)
T 2qk2_A 199 ALGTL 203 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 38
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=38.58 E-value=19 Score=34.13 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCCh
Q 015054 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE 96 (414)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSe 96 (414)
.+++..|..+..|-+.- .==.++|.|.|+.+|-+||--
T Consensus 9 ~el~~~~~a~ma~A~~~--kDp~~~KlL~v~~W~~knGl~ 46 (242)
T 3zed_D 9 AELQGLLQATMARAKEV--KDAEVFKLLKLMSWTRKNDLT 46 (242)
T ss_pred HHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHhccCHH
Confidence 45677777777776521 112589999999999999953
No 39
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=34.28 E-value=34 Score=33.29 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=32.2
Q ss_pred hhhHHHHHhhHHHhhhhhcccccCCCCCcccchH-----HHHHHHHHHHhcCHHHHHHHHHHHH
Q 015054 96 ERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNV-----RKKSQSLVALVNDKERIIEVRQKAA 154 (414)
Q Consensus 96 ervV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~V-----R~KAK~Il~LL~Dee~LreeR~kA~ 154 (414)
..+|.++-+-..-.=.|.-+...+.+|++ .+.. -+.-.-.-++|.|-+.++++|.|.+
T Consensus 118 P~~V~e~Y~~C~~PP~L~lLd~yrdDgk~-~LK~YTDPSfFfdlWkeeml~d~k~~~k~krk~~ 180 (279)
T 3p8c_D 118 PIPLQETYDVCEQPPPLNILTPYRDDGKE-GLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK 180 (279)
T ss_dssp CHHHHHHHHHSBCCCCGGGGGGGCSSCCC-GGGGTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCccccccccCChh-HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46777776554444455555444556775 2322 1222233355777788888776655
No 40
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=32.72 E-value=1e+02 Score=28.74 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=40.2
Q ss_pred CchhhhHHHHHHHHHHHcCChhhHHHHHhhHHHhhhh---------hcccccCCCCCcccchHHHHHHHHHH
Q 015054 76 NWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTL---------SDFQYIDSSGRDQGSNVRKKSQSLVA 138 (414)
Q Consensus 76 ~WR~VyKaL~LLEYLLkNGServV~e~r~h~~~Ir~L---------~~Fqy~D~~GkD~G~~VR~KAK~Il~ 138 (414)
--+.+++.|.|++.|+.+|+..+|.|+.--...++.- -+...+. ..+.-..++.++.+|++
T Consensus 124 ia~~~~~~l~l~~~la~~GN~~aiSD~gvaa~l~~aAi~gA~lNV~INL~~ik--De~~~~~~~~e~~~l~~ 193 (214)
T 1o5h_A 124 VIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEIS--DETFRKNMLEELEEQEA 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999987665544422 1222332 12334456666666655
No 41
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=32.60 E-value=1.1e+02 Score=29.27 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHH-cCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHH
Q 015054 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVA-HGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLV 137 (414)
Q Consensus 59 y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLk-NGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il 137 (414)
...|+..|..-| ..||||..--||.+|.+|+. +|... ...+.+-..+.. ++ .|...+||+.|.+.+
T Consensus 165 ~~~v~~~l~~g~--ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~--ll----~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 165 PLKMTPMLLDAL--KSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAP--FV----GDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGG--GG----GCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHH--HH----cCCCHHHHHHHHHHH
Confidence 355666676655 45689999999999999985 47761 111100022221 12 246678898886665
Q ss_pred H
Q 015054 138 A 138 (414)
Q Consensus 138 ~ 138 (414)
.
T Consensus 232 v 232 (266)
T 2of3_A 232 V 232 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=32.26 E-value=2.5e+02 Score=25.43 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHcCC---hhhHHHH-HhhHHHhhhhhcccccCCCCCcccchHHHHHH
Q 015054 59 YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDI-REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQ 134 (414)
Q Consensus 59 y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS---ervV~e~-r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK 134 (414)
...||+.|..-|..+ +|..-.=+|..|..++.+.. ..+...+ ..-+..|..+. .|....||..|-
T Consensus 144 l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l---------~D~~~~VR~aA~ 212 (249)
T 2qk1_A 144 NEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV---------NDTQPAIRTIGF 212 (249)
T ss_dssp THHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH---------TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHH
Confidence 456777777777544 89999999999999998866 4565555 45444333222 234567898887
Q ss_pred HHHHHh
Q 015054 135 SLVALV 140 (414)
Q Consensus 135 ~Il~LL 140 (414)
+.+..|
T Consensus 213 ~~l~~i 218 (249)
T 2qk1_A 213 ESFAIL 218 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 43
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=31.43 E-value=2.2e+02 Score=24.91 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=46.6
Q ss_pred ChhhhhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHhccC---CCC
Q 015054 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHE-YQMIIGVIWKRINDT---GKN 76 (414)
Q Consensus 1 ~~kv~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~-y~~Im~vLwKRL~~~---gk~ 76 (414)
|++.|++.+..+++.+..+..-+..+=..+.+|..+.+ ..+..+|.+.--..+. +..|...+.+-|... .+.
T Consensus 1 m~~~~~~~L~~~~~~l~~M~~~v~~ml~~a~~al~~~d----~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~p~~~d 76 (217)
T 1xwm_A 1 MRETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQN----ANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATD 76 (217)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 67889999999998887755322222233334443333 2455556555444443 456666666655431 234
Q ss_pred chhhhHHHHHHHHH
Q 015054 77 WRHVYKALTVLEYL 90 (414)
Q Consensus 77 WR~VyKaL~LLEYL 90 (414)
-|.+.-.|.++.+|
T Consensus 77 ~~~~~~~l~i~~~l 90 (217)
T 1xwm_A 77 LRRIVAAIKIASDI 90 (217)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666666
No 44
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=31.09 E-value=79 Score=27.39 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=7.2
Q ss_pred CCCchHHHhhhcC
Q 015054 288 APPSYEEAVSESR 300 (414)
Q Consensus 288 apps~~~a~s~~~ 300 (414)
-|.-.-|++..+-
T Consensus 77 yPGRv~eIi~ILi 89 (137)
T 1jvr_A 77 YPGRVVEIINILV 89 (137)
T ss_dssp CSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 3445566666554
No 45
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=30.93 E-value=24 Score=31.78 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHhc
Q 015054 128 NVRKKSQSLVALVN 141 (414)
Q Consensus 128 ~VR~KAK~Il~LL~ 141 (414)
.||++++..|+.|.
T Consensus 165 ~v~~~~~~Fi~WL~ 178 (189)
T 1paq_A 165 EVKKLTVKWVEWLQ 178 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34555555554443
No 46
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=30.19 E-value=24 Score=28.94 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHhccCCCCchhhhHHHHHH-HHHHHcCCh-hhHHHHHhh
Q 015054 56 YHEYQMIIGVIWKRINDTGKNWRHVYKALTVL-EYLVAHGSE-RVIDDIREH 105 (414)
Q Consensus 56 ~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LL-EYLLkNGSe-rvV~e~r~h 105 (414)
..+...|=.++-+||.+.|- -||-+|| .|||.+..+ .|.+|+++-
T Consensus 20 V~evpGIG~~~~~~L~~~Gf-----~kAy~lLGqFL~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 20 VGSLAGIGEVLGKKLEERGF-----DKAYVVLGQFLVLKKDEDLFREWLKDT 66 (89)
T ss_dssp GGGSTTCCHHHHHHHHHTTC-----CSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHcCc-----cHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34556677889999988663 3666666 799998886 588888864
No 47
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=29.47 E-value=3e+02 Score=24.38 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCCchhhhHHHHHHHHHHHc
Q 015054 39 WGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH 93 (414)
Q Consensus 39 WGPt~s~L~eIA~~T-~n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN 93 (414)
-|.+++-|..|..+. -|...+..|+..|.+-+..... -|.+=+|-||+=+++|
T Consensus 18 p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~--~hKL~~LYVvDSIvR~ 71 (157)
T 3clj_A 18 SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPD--SHKLGSLYIIDSIGRA 71 (157)
T ss_dssp SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC--cceeeeeeehHHHHHH
Confidence 588888888887776 5778889999999888875432 3456678787777666
No 48
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=29.45 E-value=1.6e+02 Score=26.26 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred ChhhhhhHHHHHHHHhcccccCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhH-HHHHHHHHHHhcc---CCCC
Q 015054 1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEY-QMIIGVIWKRIND---TGKN 76 (414)
Q Consensus 1 ~~kv~~q~~~dlkr~vkn~v~~~s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y-~~Im~vLwKRL~~---~gk~ 76 (414)
|++.|++.+..+++.+..+..-+...=..+.+|..+.+ ..+..+|.+.-...+.+ .+|-..+.+-|.. ..+.
T Consensus 1 mr~~~~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d----~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~d 76 (235)
T 1sum_B 1 MNRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERN----ESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKP 76 (235)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 77899999999999988766332222233334443333 34566666655444443 4455555444322 2345
Q ss_pred chhhhHHHHHHHHH
Q 015054 77 WRHVYKALTVLEYL 90 (414)
Q Consensus 77 WR~VyKaL~LLEYL 90 (414)
-|.|.-.|.++.-|
T Consensus 77 lr~i~~~l~i~~dl 90 (235)
T 1sum_B 77 LLTVTAGIRVAELI 90 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 49
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=27.57 E-value=28 Score=24.45 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 135 SLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 135 ~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
.|+..|.+-.+-+.+|++|+.||.=+
T Consensus 10 ~LL~~lle~Ar~~~~r~qAa~Na~ll 35 (38)
T 2rmg_A 10 GLLQILLEQARARAAREQATTNARIL 35 (38)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46666777789999999999998644
No 50
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=26.98 E-value=90 Score=31.45 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCCCCCcccchHHHHHHHHHHHhcCHHH
Q 015054 86 VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145 (414)
Q Consensus 86 LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK~Il~LL~Dee~ 145 (414)
-|+-+|+.|.++.-.-+..-+..++...-|.+ ...++.|+.||+.+++
T Consensus 329 ~l~~il~~Ga~kA~~~A~~tl~~v~~~~g~~~------------~~~~~~~~~~~~~~~~ 376 (388)
T 3prh_A 329 ELDRILDEGAERANRTANKMLKKMENAMGLGR------------KRQGRAQIRLLTKPER 376 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------------ccccHHHHHHhcCchh
Confidence 37778888888887777777777776666633 2456667778877664
No 51
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=26.51 E-value=1e+02 Score=31.07 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=41.8
Q ss_pred HHHHHHHHHcC--C---h--hhHHHHHhh-----HHHhhhhhcccccCCCCCcccchHHHHHH-----HHHHHhcC-HHH
Q 015054 84 LTVLEYLVAHG--S---E--RVIDDIREH-----SYQISTLSDFQYIDSSGRDQGSNVRKKSQ-----SLVALVND-KER 145 (414)
Q Consensus 84 L~LLEYLLkNG--S---e--rvV~e~r~h-----~~~Ir~L~~Fqy~D~~GkD~G~~VR~KAK-----~Il~LL~D-ee~ 145 (414)
+.+||+||-+- . . .|..++|.. -..|+.|..- + .||+.+. +|.+.+++ .+.
T Consensus 273 ~~~lD~~LGi~~~~~~~~~~~fl~~mr~ymP~~hr~fL~~l~~~------~-----~vr~~v~~~~~~~L~ea~~~~~~~ 341 (406)
T 2d0t_A 273 FQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESN------P-----SVREFVLSKGDAGLREAYDACVKA 341 (406)
T ss_dssp HHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTS------C-----CHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccccCChHHHHHHHHhhCCchHHHHHHHHHhc------C-----CccccccCCCCHHHHHHHHHHHHH
Confidence 57889999643 2 1 477777763 3445544432 1 3333322 23333322 367
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 015054 146 IIEVRQKAAANRDKFRNT 163 (414)
Q Consensus 146 LreeR~kA~k~R~K~~g~ 163 (414)
|+..|.+..++-.+|++.
T Consensus 342 l~~fR~~Hi~~V~ryI~~ 359 (406)
T 2d0t_A 342 LVSLRSYHLQIVTKYILI 359 (406)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999885
No 52
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=25.99 E-value=2.7e+02 Score=29.12 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=20.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 015054 134 QSLVALVNDKERIIEVRQKAAANRDKFR 161 (414)
Q Consensus 134 K~Il~LL~Dee~LreeR~kA~k~R~K~~ 161 (414)
..+-+||..+..+.++|+..+++.+...
T Consensus 570 ~~~~~ll~E~~~~~~~R~~l~~~~~~L~ 597 (608)
T 3szr_A 570 DTYSWLLKERSDTSDKRKFLKERLARLT 597 (608)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888777765543
No 53
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=25.95 E-value=2e+02 Score=27.34 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCC-------hhhHHHHHhhHHHhhhhhcccccCC---CCCcccchHHHHHHHHHHHhcC
Q 015054 81 YKALTVLEYLVAHGS-------ERVIDDIREHSYQISTLSDFQYIDS---SGRDQGSNVRKKSQSLVALVND 142 (414)
Q Consensus 81 yKaL~LLEYLLkNGS-------ervV~e~r~h~~~Ir~L~~Fqy~D~---~GkD~G~~VR~KAK~Il~LL~D 142 (414)
-||.-+|+-.+.++. -+|+..+++-...|+.| .|.|.+. -+..+-..|.++++.|++.|.-
T Consensus 14 e~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~iq~l-~ysyl~~~~L~~~~~~~~~~~~~~~i~~~l~g 84 (241)
T 2e8g_A 14 EKSVELFIRTIEGAKFRGQWDKKRSIQLAKEMIPDIQAL-RYSYIDPEELVDTPQMKDLKEKAKGIIEALGG 84 (241)
T ss_dssp HHHHHHHHHHHHTSCCCTTSCHHHHHHHHHHHHHHHHHH-HTTCCCHHHHTTSHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhee-EEeccCHHHHhcChhHHHHHHHHHHHHHHhcc
Confidence 355555555555554 34566666666666666 4666653 2344556889999999999833
No 54
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.50 E-value=1.6e+02 Score=26.46 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhhhcccC
Q 015054 127 SNVRKKSQSLVALVNDKERIIEVRQKAAA-NRDKFRNTTA 165 (414)
Q Consensus 127 ~~VR~KAK~Il~LL~Dee~LreeR~kA~k-~R~K~~g~~~ 165 (414)
..|+..+++|.+| ...|.++|.+... +++. |+..
T Consensus 113 akI~aL~~Ei~~L---r~qL~~~R~k~~~em~Ke--Gip~ 147 (175)
T 3lay_A 113 AKINAVAKEMESL---GQKLDEQRVKRDVAMAQA--GIPR 147 (175)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT--TCC-
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh--CCCC
Confidence 5889999999888 4677777776433 3333 6643
No 55
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=24.19 E-value=40 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHhc
Q 015054 3 KAFDQTFRDIKRGVN 17 (414)
Q Consensus 3 kv~~q~~~dlkr~vk 17 (414)
.|...++..|.|.+.
T Consensus 13 ~F~~Ev~~sl~ra~~ 27 (182)
T 3jui_A 13 VFQNEVLGTLQRGKE 27 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445554443
No 56
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=24.17 E-value=27 Score=24.51 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHH
Q 015054 135 SLVALVNDKERIIEVRQKAAANRD 158 (414)
Q Consensus 135 ~Il~LL~Dee~LreeR~kA~k~R~ 158 (414)
.|+..|.+-.+-+.+|++|+.||.
T Consensus 10 ~ll~~l~e~Ara~~~r~qAa~Na~ 33 (38)
T 2rmh_A 10 NIMNLLFNIAKAKNLRAQAAANAH 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467777778999999999998875
No 57
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=24.03 E-value=94 Score=28.39 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHhhcCCCCCCCHHHHHHHHH-Hhc---C----hhhHHHHHHHHHHHh-ccCCCCchhhhHHHHHHHHHHHcCC
Q 015054 30 VLDATSNEPWGPHGTLLADIAQ-ATR---N----YHEYQMIIGVIWKRI-NDTGKNWRHVYKALTVLEYLVAHGS 95 (414)
Q Consensus 30 VreATsnD~WGPt~s~L~eIA~-~T~---n----~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~LLEYLLkNGS 95 (414)
..+......|----..|.+|+. +.- . ..+|..|++.|.+.| ++. +-..+..||..|..|..+-.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhcc
Confidence 3444455667666666777777 531 1 346889999999999 555 67778999999999986543
No 58
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=23.15 E-value=1.3e+02 Score=23.53 Aligned_cols=46 Identities=13% Similarity=0.371 Sum_probs=37.7
Q ss_pred HHHHhccCCCCchhhhHHHH----HHHHHHHcCChhhHHHHHhhHHHhhh
Q 015054 66 IWKRINDTGKNWRHVYKALT----VLEYLVAHGSERVIDDIREHSYQIST 111 (414)
Q Consensus 66 LwKRL~~~gk~WR~VyKaL~----LLEYLLkNGServV~e~r~h~~~Ir~ 111 (414)
|..-+.+....|.++-|-|. -.+|+-..|.+.+-.-|+.|+..|+.
T Consensus 19 Ir~~Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 19 VSRIVKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHCSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 33445677888999988776 47899999999999999999988763
No 59
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=21.85 E-value=1e+02 Score=24.92 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 015054 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (414)
Q Consensus 128 ~VR~KAK~Il~LL~Dee~LreeR~kA~k~R~K~ 160 (414)
.+...++.|.+|+.|++.+++.++++.+..++|
T Consensus 126 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 126 NAKDLSAKIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 578899999999999999998888887766555
No 60
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=21.43 E-value=1.1e+02 Score=29.54 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcccC
Q 015054 130 RKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTA 165 (414)
Q Consensus 130 R~KAK~Il~LL~Dee~LreeR~kA~k~R~K~~g~~~ 165 (414)
.+.++.|+++ ++.+..+|-....+-.+++|...
T Consensus 219 ~~L~e~L~d~---d~~~~~WR~~H~~~v~R~IG~k~ 251 (281)
T 2nox_A 219 YELGEKFVDL---EDAFRQWRFRHVTTVERVIGFKR 251 (281)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555 57789999999999999998754
No 61
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=21.12 E-value=1.7e+02 Score=28.49 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=23.5
Q ss_pred HHHHHHHcCChhhHHHHHhhHHHhhhhhcccccCC
Q 015054 86 VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120 (414)
Q Consensus 86 LLEYLLkNGServV~e~r~h~~~Ir~L~~Fqy~D~ 120 (414)
.|+-+|..|+++.-..++..+..++...-|.|.+.
T Consensus 298 ~l~~il~~G~~~a~~~a~~~~~~v~~~~g~~~~~~ 332 (337)
T 2el7_A 298 YVMDALLEGAKRARAVAQATMEEVREKVGLLLPRK 332 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 56667777777777767777777766666666553
No 62
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=20.71 E-value=56 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc---------CCCCchhhhHHHH
Q 015054 41 PHGTLLADIAQATRNYHEYQMIIGVIWKRIND---------TGKNWRHVYKALT 85 (414)
Q Consensus 41 Pt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~---------~gk~WR~VyKaL~ 85 (414)
++..+|..|=..+ ..+....+.||+++.. ....||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~n---P~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEYN---HVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhC---cccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 3555665554432 3556677899999864 3689999997553
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.09 E-value=2.1e+02 Score=30.21 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred ChhhhhhHHHHHHHHhcccccCC-chHHHHHHHhhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchh
Q 015054 1 MKKAFDQTFRDIKRGVNKKVLKV-PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRH 79 (414)
Q Consensus 1 ~~kv~~q~~~dlkr~vkn~v~~~-s~~E~kVreATsnD~WGPt~s~L~eIA~~T~n~~~y~~Im~vLwKRL~~~gk~WR~ 79 (414)
+++.+...-.+.|..|++.+++. .+....||.+. ...+..|+... ....+.+++..|.+.|.+. +|.+
T Consensus 76 i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~--------a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~--~~~~ 144 (852)
T 4fdd_A 76 VKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATV--------GILITTIASKG-ELQNWPDLLPKLCSLLDSE--DYNT 144 (852)
T ss_dssp TTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHH--------HHHHHHHHHHT-TTTTCTTHHHHHHHHHSCS--SHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHH--------HHHHHHHHHhc-CccccHHHHHHHHHHHcCC--CHHH
Q ss_pred hhHHHHHHHHHHHcCChhhHHH-----HHhhHHHhhhhhc--------------ccccCCCCCcccchHHHHHHHHHHHh
Q 015054 80 VYKALTVLEYLVAHGSERVIDD-----IREHSYQISTLSD--------------FQYIDSSGRDQGSNVRKKSQSLVALV 140 (414)
Q Consensus 80 VyKaL~LLEYLLkNGServV~e-----~r~h~~~Ir~L~~--------------Fqy~D~~GkD~G~~VR~KAK~Il~LL 140 (414)
..-+|.+|.+|+..-.+.+-.+ +...+..|-.+-. ..++..........+..-...|+.++
T Consensus 145 r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~ 224 (852)
T 4fdd_A 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224 (852)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q ss_pred cCHHHHHHHHHHHHHH
Q 015054 141 NDKERIIEVRQKAAAN 156 (414)
Q Consensus 141 ~Dee~LreeR~kA~k~ 156 (414)
.|++. +.|..|...
T Consensus 225 ~d~~~--~vr~~a~~~ 238 (852)
T 4fdd_A 225 GDEEP--EVRKNVCRA 238 (852)
T ss_dssp TCCCH--HHHHHHHHH
T ss_pred CCCCH--HHHHHHHHH
Done!