BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015055
         (414 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
          Length = 286

 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 120/164 (73%), Gaps = 2/164 (1%)

Query: 196 PPLVPRKPLQPNNKKLPDEEDSCSVASSTAASVRTVKSRIIVAAAPTFRCTERAEKRKEF 255
           P L  RKPLQP NKK  D+ED+CS+ASS A S+R  KS +   +APTFR  +RAEKRKE+
Sbjct: 81  PLLAVRKPLQPENKKHIDDEDNCSIASSVATSMRMGKSGLTYGSAPTFRSAQRAEKRKEY 140

Query: 256 YSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHDGPPPKVELKK 315
           Y KLEEK+QALEAE+++ E R K+E EAA+KQLRK+L FKA P+P+FY++ PP K ELKK
Sbjct: 141 YQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKNLKFKAKPVPNFYYEAPPAKPELKK 200

Query: 316 MPPTRAKSPK--LGRRKSCSDAASLNQGDQVKGTSRTGNRQSLG 357
           +P TR KSPK  L RRKS SDA S +  +++  T    NR S G
Sbjct: 201 LPLTRPKSPKLILSRRKSFSDAVSSSSREEILKTVSNRNRHSTG 244


>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
          Length = 202

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 107/150 (71%), Gaps = 10/150 (6%)

Query: 209 KKLPDEEDSCSVASSTAASVRTVKSRIIVAAAPTFRCTERAEKRKEFYSKLEEKHQALEA 268
           KK  DEED CSVASS    ++  KS++    AP FR  +RAEKRKE+Y KLEEKHQALEA
Sbjct: 59  KKNLDEEDDCSVASS----MKNAKSKVTHGTAPRFRSAQRAEKRKEYYQKLEEKHQALEA 114

Query: 269 EKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHDGPPPKVELKKMPPTRAKSPKLG- 327
           E+ + E R KEE EAAIKQLRK+L FKA+P+P FY+  PP K ELKK P TR KSPKL  
Sbjct: 115 ERIELEQRQKEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKLNL 174

Query: 328 -RRKSCSDAASLNQGDQVKGTSRTGNRQSL 356
            RRKSCSDA + + G++    S + NRQS+
Sbjct: 175 SRRKSCSDAIT-SSGEE---NSNSQNRQSV 200


>sp|F4I2H7|TPX2_ARATH Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
          Length = 790

 Score = 38.9 bits (89), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 248 RAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHDGP 307
           RA +R +F  K++EK    +  + +SEA    E E A+KQ+RK++   A P+P+F     
Sbjct: 654 RAVERADFDHKIKEKENQYKRYREESEAAKMVEEERALKQMRKTMVPHARPVPNFNKPFL 713

Query: 308 PPKVELKKMPPTRAKSPKL 326
           P K        T+AKSP L
Sbjct: 714 PQKSNKGT---TKAKSPNL 729


>sp|C7DZK3|CRA1A_DANRE Collagen alpha-1(XXVII) chain A OS=Danio rerio GN=col27a1a PE=2
           SV=1
          Length = 1783

 Score = 35.4 bits (80), Expect = 0.85,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 99  KTKPEDVKTKENNKSHLVVKHASKATAGNVRTKHTIPQPFSLATEKRASNGTRPTAAELK 158
           K  P     K N       K  ++  A  + +K   P+P  L   K      +PT+    
Sbjct: 354 KPTPGKASPKLNVSKSFGPKPTARLAASKLGSKAIGPKPTPLKPSKPVK---KPTSVPKP 410

Query: 159 SVNKSSNTNSLRHLNSKKQNQVASATESRFPIFFPVKPPLVPRKPLQPNNKK--LPDEED 216
           +  K+++       ++KKQN +     +  P   P +P    +KPLQP NK    P    
Sbjct: 411 NPTKNASIGPRPTNSNKKQNAILKPLPAPKPTV-PKRPSPTNKKPLQPKNKSHTTPLTPK 469

Query: 217 SCSVASSTAAS-VRTVKSRIIVAAAP 241
           S    +ST+   + T+KS     AAP
Sbjct: 470 STLAPNSTSKKPLPTLKSTSFTTAAP 495


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,799,655
Number of Sequences: 539616
Number of extensions: 6454446
Number of successful extensions: 23959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 23310
Number of HSP's gapped (non-prelim): 860
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)