Query 015055
Match_columns 414
No_of_seqs 104 out of 125
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 02:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.8 2E-19 4.4E-24 138.1 7.6 57 243-299 1-57 (57)
2 PF12214 TPX2_importin: Cell c 61.8 6.5 0.00014 37.1 2.6 63 234-327 66-128 (176)
3 PF11690 DUF3287: Protein of u 49.4 57 0.0012 29.0 6.2 44 245-288 33-77 (109)
4 KOG2891 Surface glycoprotein [ 45.5 45 0.00097 34.7 5.6 40 244-286 386-425 (445)
5 PF12214 TPX2_importin: Cell c 45.4 25 0.00054 33.3 3.6 18 131-148 66-83 (176)
6 PF08581 Tup_N: Tup N-terminal 38.4 1.1E+02 0.0025 25.5 6.0 43 251-293 26-74 (79)
7 PF13815 Dzip-like_N: Iguana/D 34.9 97 0.0021 26.6 5.3 46 243-292 72-117 (118)
8 PRK13922 rod shape-determining 32.5 1.3E+02 0.0027 28.8 6.2 43 256-298 71-115 (276)
9 PF14193 DUF4315: Domain of un 31.4 1.4E+02 0.0031 25.1 5.6 50 256-305 10-59 (83)
10 PF10595 UPF0564: Uncharacteri 30.2 74 0.0016 32.1 4.4 58 235-305 3-60 (356)
11 PF07716 bZIP_2: Basic region 29.8 1.6E+02 0.0035 22.0 5.2 26 250-275 21-46 (54)
12 TIGR00219 mreC rod shape-deter 26.2 1.9E+02 0.0041 28.6 6.3 41 258-298 70-113 (283)
13 PF08946 Osmo_CC: Osmosensory 26.1 92 0.002 24.3 3.3 26 253-278 11-36 (46)
14 PRK13729 conjugal transfer pil 25.8 2.3E+02 0.005 30.8 7.3 53 246-299 72-128 (475)
15 KOG0241 Kinesin-like protein [ 24.5 1.3E+02 0.0029 35.9 5.6 44 258-309 592-635 (1714)
16 PF04696 Pinin_SDK_memA: pinin 23.5 3.8E+02 0.0082 23.8 7.1 20 246-265 31-50 (131)
17 PF04696 Pinin_SDK_memA: pinin 22.0 3.5E+02 0.0075 24.0 6.6 23 282-305 90-112 (131)
18 PF07946 DUF1682: Protein of u 21.4 1.6E+02 0.0035 29.4 4.9 15 240-254 249-265 (321)
19 KOG2891 Surface glycoprotein [ 21.2 2.2E+02 0.0048 29.8 5.9 29 261-289 385-413 (445)
20 KOG3859 Septins (P-loop GTPase 21.0 1.6E+02 0.0034 31.1 4.8 10 249-258 325-334 (406)
21 PF06637 PV-1: PV-1 protein (P 20.0 2.5E+02 0.0054 30.3 6.1 33 258-292 347-379 (442)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.79 E-value=2e-19 Score=138.09 Aligned_cols=57 Identities=63% Similarity=0.824 Sum_probs=56.4
Q ss_pred ccchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccCCC
Q 015055 243 FRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPM 299 (414)
Q Consensus 243 frsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~FKA~Pm 299 (414)
|+||+||++|+|||.+|+||++++|+++.++++++++++|++|++|||+|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=61.79 E-value=6.5 Score=37.08 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=43.3
Q ss_pred ccccccCCcccchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccc
Q 015055 234 RIIVAAAPTFRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHDGPPPKVEL 313 (414)
Q Consensus 234 k~t~~sap~frsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~FKA~PmPsFY~e~~pPK~el 313 (414)
..|.+..|.|++++||..|.. ..+ ...+. .+|+++|..... ..+-.+++
T Consensus 66 ~~T~p~~F~L~T~~Ra~~r~~--------------------~~~-~~~~~--------~~~~srp~ki~~--~~~~~p~~ 114 (176)
T PF12214_consen 66 PPTEPQEFHLETEERAQQRSS--------------------SVS-SSEEQ--------FNFHSRPCKILE--DVPGVPEK 114 (176)
T ss_pred CCCcccCceeehhhhhhcccc--------------------ccc-cchhh--------cccccCcccccc--CCCCCccc
Confidence 567899999999999998854 010 00110 378999983222 24455667
Q ss_pred ccCCCCCCCCCCCC
Q 015055 314 KKMPPTRAKSPKLG 327 (414)
Q Consensus 314 KKiP~TRpKSPKlg 327 (414)
+-.+.|.|+||++-
T Consensus 115 ~~~~~t~p~sp~~~ 128 (176)
T PF12214_consen 115 KVLPVTVPKSPAFA 128 (176)
T ss_pred cccccCCCCChhhh
Confidence 77799999999995
No 3
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=49.43 E-value=57 Score=29.01 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=33.3
Q ss_pred chhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Q 015055 245 CTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKE-ETEAAIKQL 288 (414)
Q Consensus 245 sdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKE-EeEaeIKqL 288 (414)
+++..+....|+.||+.+++++-.|+.+|..|.+. .-|-+++.|
T Consensus 33 ~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~L 77 (109)
T PF11690_consen 33 PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRAL 77 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667789999999999999999999888766 344444443
No 4
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.55 E-value=45 Score=34.68 Aligned_cols=40 Identities=38% Similarity=0.459 Sum_probs=29.2
Q ss_pred cchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015055 244 RCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIK 286 (414)
Q Consensus 244 rsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIK 286 (414)
+-..|-++|+. |-+||++|-+....+||.+-++++.+-+-
T Consensus 386 kieareerrkq---keeeklk~e~qkikeleek~~eeedal~~ 425 (445)
T KOG2891|consen 386 KIEAREERRKQ---KEEEKLKAEEQKIKELEEKIKEEEDALLL 425 (445)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554 77888888888888999998888876443
No 5
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=45.42 E-value=25 Score=33.29 Aligned_cols=18 Identities=50% Similarity=0.630 Sum_probs=15.8
Q ss_pred ccccCCCCchhhhhhhcC
Q 015055 131 KHTIPQPFSLATEKRASN 148 (414)
Q Consensus 131 k~tvPQPFsLaTekras~ 148 (414)
..|+||+|.|.|++|+..
T Consensus 66 ~~T~p~~F~L~T~~Ra~~ 83 (176)
T PF12214_consen 66 PPTEPQEFHLETEERAQQ 83 (176)
T ss_pred CCCcccCceeehhhhhhc
Confidence 557999999999999974
No 6
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.37 E-value=1.1e+02 Score=25.45 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=29.0
Q ss_pred HHHhhhHhHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhhcc
Q 015055 251 KRKEFYSKLEEKHQALE------AEKSQSEARTKEETEAAIKQLRKSLT 293 (414)
Q Consensus 251 KRKEFy~KLEEK~~AkE------~EK~qleAKsKEEeEaeIKqLRKSL~ 293 (414)
.+.+|-.||.--++-+. -+..+.+.+-|+.=|+||.+||..|-
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554444 23444567778888999999999874
No 7
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.92 E-value=97 Score=26.64 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=33.2
Q ss_pred ccchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 015055 243 FRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSL 292 (414)
Q Consensus 243 frsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL 292 (414)
++|-+.-..- ...|++++.+...+..+++.+.++.+ ++|++|++++
T Consensus 72 l~~q~~L~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQ---LEQLEERLQELQQEIEKLKQKLKKQK-EEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 3454544444 34889999999888888887776655 5699999875
No 8
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.52 E-value=1.3e+02 Score=28.81 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=30.4
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhhcccccCC
Q 015055 256 YSKLEEKHQALEAEKSQSEARTK--EETEAAIKQLRKSLTFKASP 298 (414)
Q Consensus 256 y~KLEEK~~AkE~EK~qleAKsK--EEeEaeIKqLRKSL~FKA~P 298 (414)
|..|.+....+++|-.+|++... ++-++|..+||+-|.++...
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 45666666677766666666555 45567888999999988654
No 9
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.38 E-value=1.4e+02 Score=25.14 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=40.8
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCC
Q 015055 256 YSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHD 305 (414)
Q Consensus 256 y~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~FKA~PmPsFY~e 305 (414)
+.|.++|+-...+....|+++..|.+-.+|=++=+++..--.-+..|.+.
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55899999999999999999999999999998888766544446666644
No 10
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=30.21 E-value=74 Score=32.07 Aligned_cols=58 Identities=36% Similarity=0.422 Sum_probs=29.9
Q ss_pred cccccCCcccchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCC
Q 015055 235 IIVAAAPTFRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHD 305 (414)
Q Consensus 235 ~t~~sap~frsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~FKA~PmPsFY~e 305 (414)
.||+..| .-+.|-+++++-..+-. ...|.+...+ +.+ ++|++.+ --|+|+|+|.+-..
T Consensus 3 iTVP~PF--~mt~RE~~kk~~~~~~~---~~~e~~~~~~--~~~-~ee~e~~-----k~FrA~pVP~~v~l 60 (356)
T PF10595_consen 3 ITVPKPF--QMTLREEEKKEKASKSQ---SDLEQEKKEL--KKQ-EEEAECK-----KKFRANPVPAHVYL 60 (356)
T ss_pred cCCCCCC--CccHHHHhccchhhhhH---HHHHHHHHHH--HHH-HHHHHhc-----cCCCCCCCCchhcc
Confidence 4555544 44677777765221111 1222222222 222 4455555 48999999986544
No 11
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.81 E-value=1.6e+02 Score=22.01 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.6
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHH
Q 015055 250 EKRKEFYSKLEEKHQALEAEKSQSEA 275 (414)
Q Consensus 250 eKRKEFy~KLEEK~~AkE~EK~qleA 275 (414)
++++++...|+..+..++.+..+|+.
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888844
No 12
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.21 E-value=1.9e+02 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhhcccccCC
Q 015055 258 KLEEKHQALEAEKSQSEARTK---EETEAAIKQLRKSLTFKASP 298 (414)
Q Consensus 258 KLEEK~~AkE~EK~qleAKsK---EEeEaeIKqLRKSL~FKA~P 298 (414)
.|.+-...+..|..+++++.+ ++.++|..+||+-|.|+...
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 344555555555444433332 23678899999999999753
No 13
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.12 E-value=92 Score=24.27 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.7
Q ss_pred HhhhHhHHHHHHHHHHHHHhHHHHHH
Q 015055 253 KEFYSKLEEKHQALEAEKSQSEARTK 278 (414)
Q Consensus 253 KEFy~KLEEK~~AkE~EK~qleAKsK 278 (414)
.|+|.-+|.|+....++...||+|.+
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~ 36 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQ 36 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998743
No 14
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.79 E-value=2.3e+02 Score=30.81 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=29.1
Q ss_pred hhHHHHHHhhhHhHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHhhccc-ccCCC
Q 015055 246 TERAEKRKEFYSKLEEKHQALE---AEKSQSEARTKEETEAAIKQLRKSLTF-KASPM 299 (414)
Q Consensus 246 dERAeKRKEFy~KLEEK~~AkE---~EK~qleAKsKEEeEaeIKqLRKSL~F-KA~Pm 299 (414)
.+...+..||..+|++=.+-++ +.+..+|++.+ +.|++|++|+..|.- ++.|.
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk-eLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE-KLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHhhhcCCC
Confidence 3555566665555544322222 33344444444 667889999988832 44443
No 15
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.54 E-value=1.3e+02 Score=35.91 Aligned_cols=44 Identities=32% Similarity=0.345 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCC
Q 015055 258 KLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHDGPPP 309 (414)
Q Consensus 258 KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~FKA~PmPsFY~e~~pP 309 (414)
-.|||-.|+|.++.. =|.+|.|||+-|.+-..|-|+|+....++
T Consensus 592 heEeKr~ALE~Qr~~--------yE~~~eqLr~~lsPst~~~~~~~~~~a~~ 635 (1714)
T KOG0241|consen 592 HEEEKRSALEEQRLM--------YERELEQLRQQLSPSTQPQPSGMDRLAYS 635 (1714)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHhhcCCCCCCCCCCCCCcCCC
Confidence 457888888766544 45679999999999999999975443333
No 16
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=23.55 E-value=3.8e+02 Score=23.80 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=16.7
Q ss_pred hhHHHHHHhhhHhHHHHHHH
Q 015055 246 TERAEKRKEFYSKLEEKHQA 265 (414)
Q Consensus 246 dERAeKRKEFy~KLEEK~~A 265 (414)
.+.+.+|.+...+|+||...
T Consensus 31 ~~~~~rR~eie~rleek~~~ 50 (131)
T PF04696_consen 31 TEQQKRRAEIEKRLEEKLKE 50 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999998754
No 17
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=22.04 E-value=3.5e+02 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcccccCCCCCCCCC
Q 015055 282 EAAIKQLRKSLTFKASPMPSFYHD 305 (414)
Q Consensus 282 EaeIKqLRKSL~FKA~PmPsFY~e 305 (414)
++-+..|..-|.-||.| +-||.+
T Consensus 90 ~~~~~~l~~fi~Tkt~P-~iyy~P 112 (131)
T PF04696_consen 90 HEHYLALANFIRTKTEP-HIYYLP 112 (131)
T ss_pred HHHHHHHHhhcccCCCC-ceeecc
Confidence 44455666666666666 456666
No 18
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=21.42 E-value=1.6e+02 Score=29.39 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=8.2
Q ss_pred CCcccch--hHHHHHHh
Q 015055 240 APTFRCT--ERAEKRKE 254 (414)
Q Consensus 240 ap~frsd--ERAeKRKE 254 (414)
.+.|+.+ .++.++++
T Consensus 249 ~~~l~~e~~~K~~k~R~ 265 (321)
T PF07946_consen 249 RFKLSPEAKKKAKKNRE 265 (321)
T ss_pred eeeeCHHHHHHHHHHHH
Confidence 3456655 45666554
No 19
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.20 E-value=2.2e+02 Score=29.85 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015055 261 EKHQALEAEKSQSEARTKEETEAAIKQLR 289 (414)
Q Consensus 261 EK~~AkE~EK~qleAKsKEEeEaeIKqLR 289 (414)
||+.|.|.-++|-+...-..++..||+|-
T Consensus 385 ekieareerrkqkeeeklk~e~qkikele 413 (445)
T KOG2891|consen 385 EKIEAREERRKQKEEEKLKAEEQKIKELE 413 (445)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 56666555555444433334444555553
No 20
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.00 E-value=1.6e+02 Score=31.09 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=4.8
Q ss_pred HHHHHhhhHh
Q 015055 249 AEKRKEFYSK 258 (414)
Q Consensus 249 AeKRKEFy~K 258 (414)
+.||.||+.-
T Consensus 325 eaKr~e~~~e 334 (406)
T KOG3859|consen 325 EAKRNEFLGE 334 (406)
T ss_pred HHHHHHHHHH
Confidence 3455555443
No 21
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.04 E-value=2.5e+02 Score=30.29 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 015055 258 KLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSL 292 (414)
Q Consensus 258 KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL 292 (414)
-|||| .|+..|+..| +|.-|+.+.++-||+-.+
T Consensus 347 aLEEK-aaLrkerd~L-~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 347 ALEEK-AALRKERDSL-AKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 57888 6666666554 445556666666776554
Done!