Query 015055
Match_columns 414
No_of_seqs 104 out of 125
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vp9_A General transcriptional 42.5 66 0.0023 26.7 6.6 50 248-297 34-89 (92)
2 3knd_B Targeting protein for X 30.8 13 0.00045 30.3 0.6 16 131-146 2-17 (81)
3 3qh9_A Liprin-beta-2; coiled-c 27.6 1E+02 0.0035 25.2 5.3 48 246-293 15-78 (81)
4 4e29_A Chimeric WZZB chain len 26.5 1.3E+02 0.0044 28.3 6.6 48 247-294 114-161 (248)
5 3nmd_A CGMP dependent protein 26.1 1.6E+02 0.0055 23.5 6.1 35 261-296 33-68 (72)
6 1t2k_D Cyclic-AMP-dependent tr 21.9 2.4E+02 0.0082 20.6 6.2 41 250-291 18-58 (61)
7 3a2a_A Voltage-gated hydrogen 21.7 1.7E+02 0.0058 22.7 5.2 41 244-292 8-48 (58)
8 3s9g_A Protein hexim1; cyclin 19.1 2.1E+02 0.007 24.4 5.7 36 256-291 39-80 (104)
9 1gu4_A CAAT/enhancer binding p 15.1 4.3E+02 0.015 20.9 6.4 40 250-290 32-71 (78)
10 4efa_G V-type proton ATPase su 14.5 3.2E+02 0.011 23.1 5.9 37 248-290 17-53 (119)
No 1
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.55 E-value=66 Score=26.67 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHHHHhhhHhHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhhcccccC
Q 015055 248 RAEKRKEFYSKLEEKHQALE------AEKSQSEARTKEETEAAIKQLRKSLTFKAS 297 (414)
Q Consensus 248 RAeKRKEFy~KLEEK~~AkE------~EK~qleAKsKEEeEaeIKqLRKSL~FKA~ 297 (414)
|..+.++|..||.--++-++ -+..+.+.+-|+.=|+||.+||..|--+..
T Consensus 34 k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 34 RLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555677777655544444 233344566788889999999999865443
No 2
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein transport; 2.15A {Xenopus laevis}
Probab=30.83 E-value=13 Score=30.31 Aligned_cols=16 Identities=50% Similarity=0.978 Sum_probs=13.8
Q ss_pred ccccCCCCchhhhhhh
Q 015055 131 KHTIPQPFSLATEKRA 146 (414)
Q Consensus 131 k~tvPQPFsLaTekra 146 (414)
.+|||.||.|+.-+|-
T Consensus 2 g~T~pkPFnls~g~kk 17 (81)
T 3knd_B 2 GHTVPKPFNLSKGKRK 17 (81)
T ss_pred CCccccccccCCCccc
Confidence 4799999999998765
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.56 E-value=1e+02 Score=25.21 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=28.0
Q ss_pred hhHHHHHHhhhHh---HHHHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHhhcc
Q 015055 246 TERAEKRKEFYSK---LEEKHQALEAEKSQSEARTKE-------------ETEAAIKQLRKSLT 293 (414)
Q Consensus 246 dERAeKRKEFy~K---LEEK~~AkE~EK~qleAKsKE-------------EeEaeIKqLRKSL~ 293 (414)
++|--+=..+++- |.-|..-+|.||.|.+.|.|- ..+++|+.|.-.|.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4443333344443 445777788888888887764 44556666555443
No 4
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=26.48 E-value=1.3e+02 Score=28.32 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=43.1
Q ss_pred hHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 015055 247 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTF 294 (414)
Q Consensus 247 ERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~F 294 (414)
.+.+-..+|...++.|...++.+....+...+.+.+..|.+|+..|..
T Consensus 114 v~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~I 161 (248)
T 4e29_A 114 VNQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRY 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777889999999999999999999999999999999999987753
No 5
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.09 E-value=1.6e+02 Score=23.48 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-cccc
Q 015055 261 EKHQALEAEKSQSEARTKEETEAAIKQLRKSL-TFKA 296 (414)
Q Consensus 261 EK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL-~FKA 296 (414)
|.+.+++.....++.+.. +.|++|+.||..| .|+.
T Consensus 33 eELr~kd~~I~eLEk~L~-ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 33 EELRQRDALIDELELELD-QKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 446777777666666554 4567899999888 5654
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.87 E-value=2.4e+02 Score=20.64 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 015055 250 EKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKS 291 (414)
Q Consensus 250 eKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKS 291 (414)
.++++....||.+...++.+...|+..-.. -..++.+|+.-
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~-L~~e~~~Lk~~ 58 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTL-LRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 567788889999999999999888876533 33446666653
No 7
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.70 E-value=1.7e+02 Score=22.67 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred cchhHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 015055 244 RCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSL 292 (414)
Q Consensus 244 rsdERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL 292 (414)
|++++-.|=|+-.-+|-+|++-+|..- -++|.||-+|++=|
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c--------~e~eQEieRL~~LL 48 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSC--------SEKEQEIERLNKLL 48 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 556666666666666666666554322 23455677777644
No 8
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=19.11 E-value=2.1e+02 Score=24.43 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=26.7
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHhh
Q 015055 256 YSKLEEKHQALEAEKSQSEARTK------EETEAAIKQLRKS 291 (414)
Q Consensus 256 y~KLEEK~~AkE~EK~qleAKsK------EEeEaeIKqLRKS 291 (414)
|..||.++.-.|.|-+.++..++ ++-+++|.+||..
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 77888888888877777766543 5667788888753
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=15.09 E-value=4.3e+02 Score=20.90 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 015055 250 EKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRK 290 (414)
Q Consensus 250 eKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRK 290 (414)
++|+.=..-++++...++.|-.+|+++-. .-+.|+..||.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~-~L~~E~~~Lr~ 71 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVE-QLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44555556788888888888888877655 34456788876
No 10
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=14.48 E-value=3.2e+02 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 015055 248 RAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRK 290 (414)
Q Consensus 248 RAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRK 290 (414)
.||+|+. |+...-..+|++.-..-|++.++||.+.|.
T Consensus 17 ~AEk~A~------~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~ 53 (119)
T 4efa_G 17 QAEKEAH------EIVSKARKYRQDKLKQAKTDAAKEIDSYKI 53 (119)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566543 444444455666556667777778877775
Done!