Query 015055
Match_columns 414
No_of_seqs 104 out of 125
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 05:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8ma1 d.58.60.1 (A:64-330) E 21.4 89 0.0065 26.6 6.6 47 247-293 136-182 (267)
2 d3b8oa1 d.58.60.1 (A:55-319) L 19.9 93 0.0067 26.7 6.4 47 247-293 133-179 (265)
3 d3b8pa1 d.58.60.1 (A:54-292) C 16.9 84 0.0061 26.7 5.3 48 247-294 106-153 (239)
4 d1rmda1 g.37.1.1 (A:87-116) V( 13.2 22 0.0016 22.9 0.2 12 65-76 6-17 (30)
5 d1bvsa3 b.40.4.2 (A:1-63) DNA 10.3 54 0.0039 22.7 1.6 23 5-27 5-27 (63)
6 d2awia1 a.35.1.11 (A:2-66) Prg 9.7 52 0.0038 23.8 1.3 14 283-296 5-18 (65)
7 d1cuka3 b.40.4.2 (A:1-64) DNA 7.7 71 0.0052 22.2 1.4 23 5-27 5-27 (64)
8 d1f5na1 a.114.1.1 (A:284-583) 7.7 3.2E+02 0.023 21.6 5.7 23 253-275 228-250 (300)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 7.6 3.1E+02 0.022 19.2 5.0 36 253-289 51-86 (88)
10 d1ixra2 b.40.4.2 (A:1-62) DNA 6.6 1.1E+02 0.0078 21.1 1.9 23 5-27 5-27 (62)
No 1
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=21.45 E-value=89 Score=26.62 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=41.4
Q ss_pred hHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 015055 247 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 293 (414)
Q Consensus 247 ERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~ 293 (414)
.+.+--.+|...|+.|.+..+.+....+.+.+++.+..|.+|...|.
T Consensus 136 v~~~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 136 VVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999999999999999987664
No 2
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=19.88 E-value=93 Score=26.70 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=40.5
Q ss_pred hHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 015055 247 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 293 (414)
Q Consensus 247 ERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~ 293 (414)
.+.+--.+|...++.++..++.+...+++..+...+-.|.+|...|.
T Consensus 133 ~~~~l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 133 AASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999999999999999999999999999999999997664
No 3
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=16.85 E-value=84 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=41.2
Q ss_pred hHHHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc
Q 015055 247 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTF 294 (414)
Q Consensus 247 ERAeKRKEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLRKSL~F 294 (414)
.+.+--.+|...++.|.+.++.+...++...|...+.+|.+|...|..
T Consensus 106 ~~~~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~I 153 (239)
T d3b8pa1 106 VAKELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRY 153 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778889999999999999999999999999999999887653
No 4
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.16 E-value=22 Score=22.89 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=10.4
Q ss_pred hhcccccccchh
Q 015055 65 EVKECTSETSIE 76 (414)
Q Consensus 65 evkEct~e~sv~ 76 (414)
-+|||.+|+|++
T Consensus 6 p~keC~eEvsle 17 (30)
T d1rmda1 6 PAQDCNEEVSLE 17 (30)
T ss_dssp CSTTCCCEEEHH
T ss_pred ccccccchhchh
Confidence 378999999996
No 5
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=10.32 E-value=54 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.1
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015055 5 VTDVCMDKEADCVIVYSNGVSHD 27 (414)
Q Consensus 5 vtdi~mdk~p~~v~v~snGvS~d 27 (414)
+++...+++||.||+.-||+--.
T Consensus 5 i~G~i~~~~~~~ivi~v~GvGY~ 27 (63)
T d1bvsa3 5 VRGEVLEVALDHAVIEAAGIGYR 27 (63)
T ss_dssp ECEEEEEECSSCEEEEETTEEEC
T ss_pred EEEEEEEECCCEEEEEECCEEEE
Confidence 57788999999999999998765
No 6
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=9.74 E-value=52 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.6
Q ss_pred HHHHHHHhhccccc
Q 015055 283 AAIKQLRKSLTFKA 296 (414)
Q Consensus 283 aeIKqLRKSL~FKA 296 (414)
.-|||+||+|+++-
T Consensus 5 ~~lkqir~elnyhq 18 (65)
T d2awia1 5 SVLKQIRQELNYHQ 18 (65)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred hHHHHHHHHhhhhH
Confidence 45899999999864
No 7
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.74 E-value=71 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=19.7
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015055 5 VTDVCMDKEADCVIVYSNGVSHD 27 (414)
Q Consensus 5 vtdi~mdk~p~~v~v~snGvS~d 27 (414)
+.+...++++|.|||.-||+--.
T Consensus 5 l~G~l~~~~~~~ivi~v~GvGY~ 27 (64)
T d1cuka3 5 LRGIIIEKQPPLVLIEVGGVGYE 27 (64)
T ss_dssp EEEEEEEEETTEEEEEETTEEEE
T ss_pred EEEEEEEEcCCEEEEEECCEEEE
Confidence 56788899999999999998654
No 8
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.67 E-value=3.2e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=10.1
Q ss_pred HhhhHhHHHHHHHHHHHHHhHHH
Q 015055 253 KEFYSKLEEKHQALEAEKSQSEA 275 (414)
Q Consensus 253 KEFy~KLEEK~~AkE~EK~qleA 275 (414)
+++...+++....++.+..++..
T Consensus 228 ~~~~~~~e~~~~~~ee~~~~l~~ 250 (300)
T d1f5na1 228 RKNEQMMEQKERSYQEHLKQLTE 250 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.59 E-value=3.1e+02 Score=19.20 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=21.8
Q ss_pred HhhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015055 253 KEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLR 289 (414)
Q Consensus 253 KEFy~KLEEK~~AkE~EK~qleAKsKEEeEaeIKqLR 289 (414)
.+|...|++....++.++.++..+. +.-..+|.+|+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~-~~L~~~l~~L~ 86 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRR-EQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 3667788888877777777665433 22344455553
No 10
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.64 E-value=1.1e+02 Score=21.10 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.6
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015055 5 VTDVCMDKEADCVIVYSNGVSHD 27 (414)
Q Consensus 5 vtdi~mdk~p~~v~v~snGvS~d 27 (414)
+.+....+.+|.+||.-||+--.
T Consensus 5 i~G~i~~~~~~~ivi~~~GvGY~ 27 (62)
T d1ixra2 5 LRGLVLKKEAGGFVLLAGGVGFF 27 (62)
T ss_dssp EEEEEEEECSSEEEEECSSEEEE
T ss_pred EEEEEEEEcCCEEEEEECCEEEE
Confidence 56778899999999999998754
Done!