BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015056
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0FPE9|NALP3_MACMU NACHT, LRR and PYD domains-containing protein 3 OS=Macaca mulatta
GN=NLRP3 PE=2 SV=1
Length = 1035
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 257 HKIENLSIDISSFIENCPSSVV--------VELVS-FLSSGRSLCSLKLRHCHLDRDFGR 307
H++E+LS+ F+ N P +++V L + CS +L + HL F R
Sbjct: 674 HRVESLSL---GFLHNMPKEEEEEEKEGRHLDMVQCVLPGSHAACSHRLVNSHLTSSFCR 730
Query: 308 MVFSSLLEASSSLSILDLSGNSIG 331
+FS +L S SL+ LDLS NS+G
Sbjct: 731 GLFS-VLSTSQSLTELDLSDNSLG 753
>sp|Q96P20|NALP3_HUMAN NACHT, LRR and PYD domains-containing protein 3 OS=Homo sapiens
GN=NLRP3 PE=1 SV=3
Length = 1036
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Query: 257 HKIENLSIDISSFIENCPSSVV--------VELVSFL--SSGRSLCSLKLRHCHLDRDFG 306
H++E+LS+ F+ N P +++V + SS + CS L + HL F
Sbjct: 674 HRVESLSL---GFLHNMPKEEEEEEKEGRHLDMVQCVLPSSSHAACSHGLVNSHLTSSFC 730
Query: 307 RMVFSSLLEASSSLSILDLSGNSIG 331
R +FS +L S SL+ LDLS NS+G
Sbjct: 731 RGLFS-VLSTSQSLTELDLSDNSLG 754
>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila
melanogaster GN=CG6488 PE=2 SV=1
Length = 570
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 99 TDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILN-YIGYEQQMNH 157
T ++E + +Q + L++ +L + ++R I+ S +I + ++ EQQ++
Sbjct: 42 TCKVEQLKKEQTRLAEEARTILEQTQDLAI-SNYRTFITTAENSRSIFSEFLRSEQQLDT 100
Query: 158 LACDYSKLSYHCQQFGHYARCLRLQ---NALCVEETCQLLRESKLQSLVLRWIRFEEHVQ 214
L LS C++F + L Q N++ +++ QLL +L L+ R IR + +
Sbjct: 101 LVSKLPDLSVQCERFLQDSAELNEQRRLNSITLQKNAQLLEVLELPQLMERCIREGRYEE 160
Query: 215 AL 216
AL
Sbjct: 161 AL 162
>sp|P44285|Y1667_HAEIN Putative L,D-transpeptidase HI_1667 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1667
PE=3 SV=1
Length = 489
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 134 GLISDINISDTILNYIGYEQQMNHLACD--YSKLSYHCQQFGHYARCLRLQNALCVEETC 191
GL+ D+ +SD +L+Y+ Y Q + A + YS Y QQ +Q L E
Sbjct: 145 GLVYDVLLSDILLDYLYYTQNVRSQASNWLYSSAQYQAQQ----PENDHIQRWLSAVENN 200
Query: 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLAS----LEFLHCKLSPSFVEGICR 247
QLL +QSL + + +Q+L + + E+ + + ++ P F GI
Sbjct: 201 QLL--DFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLAMNAQRLRVIPDFHNGIFV 258
Query: 248 SLCSKRKRIHK 258
++ S + + ++
Sbjct: 259 NIPSYKLQYYR 269
>sp|Q96HP0|DOCK6_HUMAN Dedicator of cytokinesis protein 6 OS=Homo sapiens GN=DOCK6 PE=1 SV=3
Length = 2047
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 75 RKRGRYGNFNTV-WKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFR 133
R+R +GN V W+K T W +D+++ + + EA V+G L A LVVL +
Sbjct: 1340 RERSPFGNPENVRWRKSV-THWKQTSDRVDKTKDEMEH-EALVEGNLATEASLVVLDTLE 1397
Query: 134 GLISDINISDTILNYIG 150
++ + +S+ + +G
Sbjct: 1398 IIVQTVMLSEARESVLG 1414
>sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2
Length = 1064
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 136 ISDINISDTILNYIGYEQQMNHLACDYS--KLSYHCQQFGHYARCLRLQNALCVEETCQL 193
IS + + ++ IG +Q + L + S L + G + L AL V Q+
Sbjct: 751 ISMLQLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRG-AIALAEALKVN---QI 806
Query: 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253
L LQS + + ++ALC +++TL+SL +SP + + ++LC
Sbjct: 807 LENLDLQSNSISDMGVTVLMRALC-----SNQTLSSLNLRENSISPEGAQALTQALC--- 858
Query: 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF----GRMV 309
R + +++L + + + ++ V + S L H HL +F
Sbjct: 859 -RNNTLKHLDLTANLLHDRGAQAIAVAVGENHS---------LTHLHLQWNFIQAGAARA 908
Query: 310 FSSLLEASSSLSILDLSGNSIG 331
L+ + +L+ LDL N+IG
Sbjct: 909 LGQALQLNRTLTTLDLQENAIG 930
>sp|Q6FW66|PSF3_CANGA DNA replication complex GINS protein PSF3 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=PSF3 PE=3 SV=1
Length = 249
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 292 CSLKLRHCHLDRDFGRMVFSSLLEA-------SSSLSILDLSGNSIGGWL---------- 334
+LK + D+D G +V+ LLE +SS+SI GN L
Sbjct: 116 MALKWIALYSDKDLGEIVYELLLERAQQINNYASSVSIDTEYGNKYRSALLDALRLQQNS 175
Query: 335 SKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGA 382
+ DRSGPL S+ SL + R N S I +S+G + Q N+ A
Sbjct: 176 ANEDRSGPLASINGTSSLTT-RSANNSGIGSSVG-----TSQATNLAA 217
>sp|Q756G8|ATG7_ASHGO Ubiquitin-like modifier-activating enzyme ATG7 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATG7 PE=3 SV=1
Length = 625
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 77 RGRYGNFNTV--WKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVL 129
RG + NFNT+ +K+L K R+ ++Q Q WEA V G LDEAA V+
Sbjct: 78 RGSFFNFNTLEEFKRLDKGRF--LSEQ------AQLLWEAGVNGYLDEAAGFFVI 124
>sp|Q8VDR9|DOCK6_MOUSE Dedicator of cytokinesis protein 6 OS=Mus musculus GN=Dock6 PE=1 SV=4
Length = 2080
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 65 GSPDYCFENGRKRGRYGNFNTV-WKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEA 123
G+ R+R +GN V W+K T W +D+++ + + EA V G L
Sbjct: 1363 GARQEMVRRSRERSPFGNQENVRWRK-SATHWRQTSDRVDKTKDEMEH-EALVDGNLATE 1420
Query: 124 AELVVLPSFRGLISDINISDT 144
A LVVL + ++ + +S+
Sbjct: 1421 ASLVVLDTLETIVQTVMLSEA 1441
>sp|A8C756|THADA_MOUSE Thyroid adenoma-associated protein homolog OS=Mus musculus GN=Thada
PE=2 SV=1
Length = 1938
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 137 SDINISDTILNYI-GYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLR 195
S++N L ++ +Q+ HL C S H Q+ H R Q+ L QL R
Sbjct: 1822 SEVNFWAETLTFVKSLCRQLFHLLCQSGWQSPHSQKLCHLQRIASEQSHL----ISQLFR 1877
Query: 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC 235
E L + L+ + + +L IQ TLA L L C
Sbjct: 1878 ELPLSAEFLKTVEY-------TRLRIQEERTLAVLRLLAC 1910
>sp|Q647I9|NALP5_BOVIN NACHT, LRR and PYD domains-containing protein 5 OS=Bos taurus
GN=NLRP5 PE=2 SV=1
Length = 1098
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 216 LCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275
LC+++++ S L L+ ++C+L+ S C+SL + R ++ +L + ++ +
Sbjct: 927 LCEVMMEPSCPLRDLDLVNCRLTAS----CCKSLSNVITRSPRLRSLDLAANALGDE--- 979
Query: 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331
+ L L +L L L C L + G S+ L S L+ L+L N +G
Sbjct: 980 -GIAALCEGLKQKNTLTRLGLEACGLTSE-GCKALSAALTCSRHLASLNLMRNDLG 1033
>sp|Q8R4B8|NALP3_MOUSE NACHT, LRR and PYD domains-containing protein 3 OS=Mus musculus
GN=Nlrp3 PE=2 SV=1
Length = 1033
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 254 KRIHKIENLSIDISSFIENCPSSVVV---------ELVSFLSSGRSLCSLKLRHCHLDRD 304
K H+++ LS+ F N P ++ CS +L +C L
Sbjct: 669 KNCHRVKTLSL---GFFHNSPKEEEEERRGGRPLDQVQCVFPDTHVACSSRLVNCCLTSS 725
Query: 305 FGRMVFSSLLEASSSLSILDLSGNSIG 331
F R +FSS L + SL+ LDLS N++G
Sbjct: 726 FCRGLFSS-LSTNRSLTELDLSDNTLG 751
>sp|E9Q5R7|NAL12_MOUSE NACHT, LRR and PYD domains-containing protein 12 OS=Mus musculus
GN=Nlrp12 PE=2 SV=1
Length = 1054
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 213 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272
V+ LC+ L S L +L C++S S + + ++ + R I +D+S
Sbjct: 723 VRLLCQGLRHASCKLQNLRLKRCQISGSACQDLAAAVIANRNLIR------LDLSD---- 772
Query: 273 CPSSVVVELVSFLSSGRS-----LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG 327
+S+ V + L G L ++LR C L+ GR + +S+L +S L LDL+G
Sbjct: 773 --NSIGVPGLELLCEGLQHPRCRLQMIQLRKCLLEAAAGRSL-ASVLSNNSYLVELDLTG 829
Query: 328 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRL--LNLSHIAASLGKFFGTSVQV------LN 379
N + D L G + LR L + H+ + + +++++ L+
Sbjct: 830 NPL------EDSGLKLLCQGLRHPVCRLRTLWLKICHLGQASCEDLASTLKMNQSLLELD 883
Query: 380 IGAIGLGSSGFRVLQDGVT 398
+G LG SG +L +G++
Sbjct: 884 LGLNDLGDSGVLLLCEGLS 902
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,570,326
Number of Sequences: 539616
Number of extensions: 6229863
Number of successful extensions: 14217
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 14187
Number of HSP's gapped (non-prelim): 63
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)