Query 015056
Match_columns 414
No_of_seqs 97 out of 107
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.7 5.4E-17 1.2E-21 154.3 14.9 203 196-414 80-291 (319)
2 cd00116 LRR_RI Leucine-rich re 99.6 3.7E-15 8E-20 141.7 16.2 197 199-414 25-234 (319)
3 KOG4308 LRR-containing protein 99.6 1.8E-16 3.9E-21 166.0 -1.6 202 199-414 89-303 (478)
4 KOG1909 Ran GTPase-activating 99.4 7.8E-13 1.7E-17 133.5 8.2 183 213-413 81-310 (382)
5 KOG4308 LRR-containing protein 99.3 2.8E-13 6E-18 142.1 0.8 191 209-414 37-246 (478)
6 KOG1909 Ran GTPase-activating 99.2 4.3E-11 9.2E-16 121.1 10.2 114 209-332 15-134 (382)
7 COG5238 RNA1 Ran GTPase-activa 98.8 1.7E-08 3.8E-13 100.5 7.6 189 209-410 15-251 (388)
8 PLN00113 leucine-rich repeat r 98.4 3.8E-07 8.2E-12 101.2 6.0 174 197-414 118-297 (968)
9 PLN00113 leucine-rich repeat r 98.3 1.2E-06 2.6E-11 97.3 6.7 38 372-413 307-344 (968)
10 KOG4242 Predicted myosin-I-bin 98.2 9.1E-07 2E-11 93.0 3.8 193 208-413 199-480 (553)
11 KOG3207 Beta-tubulin folding c 98.1 1.4E-06 3E-11 91.0 1.6 216 86-361 49-279 (505)
12 KOG4194 Membrane glycoprotein 97.6 9.5E-06 2.1E-10 87.7 -1.4 106 288-413 316-428 (873)
13 smart00368 LRR_RI Leucine rich 97.4 0.00018 4E-09 47.8 3.2 28 288-315 1-28 (28)
14 KOG2120 SCF ubiquitin ligase, 97.3 9.3E-05 2E-09 75.1 2.1 128 259-411 187-323 (419)
15 KOG4194 Membrane glycoprotein 97.3 0.00018 4E-09 78.1 4.3 149 227-413 80-233 (873)
16 smart00368 LRR_RI Leucine rich 97.3 0.00017 3.7E-09 48.0 2.5 27 372-398 1-27 (28)
17 COG5238 RNA1 Ran GTPase-activa 97.3 0.0014 3E-08 66.2 9.8 206 196-413 90-315 (388)
18 PRK15387 E3 ubiquitin-protein 97.1 0.00031 6.7E-09 78.6 3.8 37 373-414 422-458 (788)
19 PRK15370 E3 ubiquitin-protein 97.1 0.00076 1.6E-08 75.3 6.6 36 372-414 345-380 (754)
20 PRK15387 E3 ubiquitin-protein 97.1 0.00073 1.6E-08 75.7 6.2 34 373-414 382-415 (788)
21 PF14580 LRR_9: Leucine-rich r 97.1 0.0002 4.4E-09 66.6 1.2 37 374-413 89-125 (175)
22 KOG1859 Leucine-rich repeat pr 97.1 5.4E-05 1.2E-09 83.6 -3.0 81 311-413 181-266 (1096)
23 PRK15370 E3 ubiquitin-protein 96.8 0.0026 5.7E-08 71.1 7.5 40 374-414 389-428 (754)
24 KOG1259 Nischarin, modulator o 96.8 0.00061 1.3E-08 69.6 1.8 98 289-413 284-386 (490)
25 KOG2120 SCF ubiquitin ligase, 96.7 0.0031 6.7E-08 64.4 5.9 169 185-384 197-374 (419)
26 PLN03210 Resistant to P. syrin 96.6 0.0029 6.2E-08 73.3 6.3 33 373-410 846-878 (1153)
27 KOG0444 Cytoskeletal regulator 96.6 0.00049 1.1E-08 75.4 -0.1 149 228-413 10-185 (1255)
28 COG4886 Leucine-rich repeat (L 96.5 0.0022 4.7E-08 64.3 3.3 145 226-413 141-289 (394)
29 PF14580 LRR_9: Leucine-rich r 96.4 0.0027 5.8E-08 59.2 3.1 85 223-332 17-102 (175)
30 KOG0444 Cytoskeletal regulator 96.2 0.0022 4.9E-08 70.5 1.8 101 289-413 150-280 (1255)
31 KOG0618 Serine/threonine phosp 96.1 0.0036 7.9E-08 70.9 3.1 71 157-237 206-276 (1081)
32 KOG1947 Leucine rich repeat pr 96.0 0.056 1.2E-06 54.3 10.9 138 174-329 188-332 (482)
33 PLN03210 Resistant to P. syrin 95.7 0.011 2.4E-07 68.6 5.0 37 194-235 608-644 (1153)
34 KOG0617 Ras suppressor protein 95.7 0.00037 8E-09 66.5 -5.7 158 206-413 19-185 (264)
35 PF13516 LRR_6: Leucine Rich r 95.7 0.0048 1E-07 39.1 1.0 24 372-395 1-24 (24)
36 KOG0618 Serine/threonine phosp 95.2 0.0042 9.1E-08 70.4 -0.8 88 226-332 220-324 (1081)
37 KOG1947 Leucine rich repeat pr 95.1 0.032 6.9E-07 56.0 5.4 117 259-393 190-316 (482)
38 PF12799 LRR_4: Leucine Rich r 94.9 0.029 6.2E-07 40.9 3.2 37 373-414 1-37 (44)
39 KOG1259 Nischarin, modulator o 94.9 0.0057 1.2E-07 62.7 -0.7 80 287-387 305-388 (490)
40 PF13516 LRR_6: Leucine Rich r 94.8 0.015 3.2E-07 36.8 1.4 24 288-311 1-24 (24)
41 KOG3665 ZYG-1-like serine/thre 94.4 0.082 1.8E-06 58.9 6.7 41 288-332 147-187 (699)
42 PLN03150 hypothetical protein; 94.1 0.097 2.1E-06 57.2 6.4 102 290-412 419-526 (623)
43 PF12799 LRR_4: Leucine Rich r 93.9 0.089 1.9E-06 38.3 3.8 37 290-332 2-38 (44)
44 KOG3926 F-box proteins [Amino 93.8 0.042 9.1E-07 55.2 2.7 89 7-113 178-276 (332)
45 KOG4341 F-box protein containi 93.5 0.033 7.2E-07 58.8 1.4 64 170-235 134-200 (483)
46 KOG3207 Beta-tubulin folding c 93.5 0.047 1E-06 58.0 2.4 128 259-413 123-258 (505)
47 KOG3665 ZYG-1-like serine/thre 93.4 0.18 3.9E-06 56.3 7.0 40 4-44 2-41 (699)
48 PF13855 LRR_8: Leucine rich r 93.2 0.067 1.4E-06 40.3 2.3 14 319-332 2-15 (61)
49 PLN03150 hypothetical protein; 93.2 0.11 2.3E-06 56.9 4.7 79 319-414 419-503 (623)
50 PF06881 Elongin_A: RNA polyme 92.8 0.22 4.8E-06 42.7 5.3 66 28-114 3-72 (109)
51 KOG1859 Leucine-rich repeat pr 92.7 0.053 1.2E-06 60.9 1.6 121 285-413 183-321 (1096)
52 KOG0531 Protein phosphatase 1, 92.4 0.014 3.1E-07 59.9 -3.1 35 375-414 234-268 (414)
53 PF13855 LRR_8: Leucine rich r 92.2 0.087 1.9E-06 39.6 1.8 38 290-332 2-39 (61)
54 KOG0531 Protein phosphatase 1, 91.9 0.059 1.3E-06 55.4 0.7 41 285-332 114-154 (414)
55 KOG3735 Tropomodulin and leiom 90.4 0.73 1.6E-05 47.6 6.7 128 213-351 186-314 (353)
56 KOG0472 Leucine-rich repeat pr 89.9 0.25 5.5E-06 52.5 3.2 44 283-332 429-472 (565)
57 COG4886 Leucine-rich repeat (L 89.0 0.25 5.4E-06 49.6 2.3 107 283-414 157-268 (394)
58 PRK15386 type III secretion pr 88.5 0.82 1.8E-05 48.5 5.7 148 208-411 35-187 (426)
59 KOG2982 Uncharacterized conser 86.3 0.47 1E-05 49.0 2.4 44 286-332 68-111 (418)
60 KOG0472 Leucine-rich repeat pr 86.2 0.43 9.4E-06 50.8 2.1 85 289-392 458-547 (565)
61 KOG2982 Uncharacterized conser 84.4 0.61 1.3E-05 48.2 2.2 168 184-381 109-287 (418)
62 KOG0617 Ras suppressor protein 82.8 0.11 2.4E-06 50.0 -3.6 76 288-386 32-115 (264)
63 KOG4237 Extracellular matrix p 82.6 0.59 1.3E-05 49.6 1.2 58 287-360 296-353 (498)
64 KOG3735 Tropomodulin and leiom 80.9 3 6.4E-05 43.3 5.5 128 246-404 187-316 (353)
65 KOG4242 Predicted myosin-I-bin 79.6 1.1 2.4E-05 48.4 2.0 71 274-349 425-495 (553)
66 PF13504 LRR_7: Leucine rich r 75.8 1.9 4.1E-05 25.6 1.5 14 319-332 2-15 (17)
67 KOG0532 Leucine-rich repeat (L 75.4 0.52 1.1E-05 52.0 -1.8 103 285-414 117-224 (722)
68 KOG2739 Leucine-rich acidic nu 75.0 0.88 1.9E-05 45.4 -0.2 40 289-332 91-130 (260)
69 smart00367 LRR_CC Leucine-rich 74.3 1.9 4E-05 27.8 1.3 23 373-395 2-25 (26)
70 KOG3864 Uncharacterized conser 74.2 1.2 2.6E-05 43.5 0.4 64 282-360 118-183 (221)
71 KOG4341 F-box protein containi 74.1 4.5 9.7E-05 43.4 4.6 137 198-360 295-433 (483)
72 KOG4579 Leucine-rich repeat (L 70.0 1.2 2.7E-05 41.5 -0.4 15 372-386 99-113 (177)
73 PF00560 LRR_1: Leucine Rich R 64.5 3.1 6.6E-05 25.9 0.7 14 319-332 1-14 (22)
74 cd03717 SOCS_SOCS_like SOCS (s 63.5 17 0.00037 26.0 4.4 36 3-41 2-37 (39)
75 PRK15386 type III secretion pr 61.0 22 0.00048 38.0 6.6 45 275-328 38-82 (426)
76 COG5095 TAF6 Transcription ini 60.3 3.2 7E-05 43.0 0.3 76 108-193 195-287 (450)
77 KOG4579 Leucine-rich repeat (L 59.0 4.2 9E-05 38.2 0.8 51 277-332 41-91 (177)
78 smart00365 LRR_SD22 Leucine-ri 54.6 9.4 0.0002 25.4 1.7 14 401-414 2-15 (26)
79 smart00369 LRR_TYP Leucine-ric 52.0 11 0.00024 23.8 1.8 14 401-414 2-15 (26)
80 smart00370 LRR Leucine-rich re 52.0 11 0.00024 23.8 1.8 14 401-414 2-15 (26)
81 cd03742 SOCS_Rab40 SOCS (suppr 46.4 35 0.00075 25.5 3.8 36 2-40 1-36 (43)
82 cd03735 SOCS_SOCS1 SOCS (suppr 45.5 47 0.001 24.7 4.4 37 2-41 1-37 (43)
83 KOG4237 Extracellular matrix p 43.8 13 0.00029 39.8 1.8 43 285-332 270-312 (498)
84 KOG2739 Leucine-rich acidic nu 43.1 10 0.00022 38.1 0.7 37 373-412 91-127 (260)
85 KOG2721 Uncharacterized conser 42.9 14 0.00031 36.4 1.7 65 125-199 114-178 (260)
86 cd03737 SOCS_SOCS3 SOCS (suppr 42.1 42 0.00092 24.8 3.7 33 3-39 2-34 (42)
87 PF07525 SOCS_box: SOCS box; 38.8 34 0.00074 24.4 2.7 35 4-40 1-37 (40)
88 cd03587 SOCS SOCS (suppressors 36.3 77 0.0017 22.6 4.2 37 4-41 2-39 (41)
89 KOG0532 Leucine-rich repeat (L 36.2 5.9 0.00013 44.1 -2.2 18 222-239 118-135 (722)
90 PLN00158 histone H2B; Provisio 36.1 43 0.00093 30.0 3.4 26 72-97 18-43 (116)
91 cd03746 SOCS_WSB1_SWIP1 SOCS ( 35.6 76 0.0016 23.1 4.1 35 4-41 3-37 (40)
92 PTZ00463 histone H2B; Provisio 33.6 63 0.0014 29.0 4.1 27 71-97 18-44 (117)
93 cd03736 SOCS_SOCS2 SOCS (suppr 31.6 1E+02 0.0022 22.5 4.3 34 3-41 2-35 (41)
94 cd03716 SOCS_ASB_like SOCS (su 31.1 1.1E+02 0.0023 22.1 4.3 37 3-40 2-39 (42)
95 cd03740 SOCS_SOCS6 SOCS (suppr 30.4 89 0.0019 22.8 3.8 37 3-42 2-38 (41)
96 smart00253 SOCS suppressors of 29.8 1.2E+02 0.0027 22.0 4.5 36 3-41 6-41 (43)
97 KOG4658 Apoptotic ATPase [Sign 29.0 56 0.0012 38.0 3.8 82 282-384 564-653 (889)
98 cd03734 SOCS_CIS1 SOCS (suppre 28.9 1.3E+02 0.0027 22.2 4.3 34 3-41 2-35 (41)
99 PF12937 F-box-like: F-box-lik 26.9 52 0.0011 23.4 2.1 22 29-50 1-22 (47)
100 KOG1644 U2-associated snRNP A' 26.6 72 0.0016 31.6 3.5 99 290-409 43-148 (233)
101 smart00364 LRR_BAC Leucine-ric 24.8 43 0.00092 22.5 1.1 13 402-414 3-15 (26)
102 cd03718 SOCS_SSB1_4 SOCS (supp 24.5 1.6E+02 0.0034 21.5 4.2 37 3-40 2-39 (42)
103 PF00646 F-box: F-box domain; 23.7 41 0.00088 23.7 1.0 22 29-50 3-24 (48)
104 cd03745 SOCS_WSB2_SWIP2 SOCS ( 22.8 1.5E+02 0.0032 21.6 3.7 34 4-40 3-36 (39)
105 KOG2123 Uncharacterized conser 22.3 27 0.00059 36.2 -0.2 99 236-359 25-123 (388)
106 KOG1879 UDP-glucose:glycoprote 22.1 40 0.00086 40.7 1.0 17 288-304 1410-1426(1470)
107 cd03733 SOCS_WSB_SWIP SOCS (su 21.5 1.7E+02 0.0038 21.1 3.9 34 4-40 3-36 (39)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=5.4e-17 Score=154.26 Aligned_cols=203 Identities=20% Similarity=0.232 Sum_probs=151.7
Q ss_pred cccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 196 ~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
..+|++|.++.+.-.......+..+..+ ++|++|++++|.+++.++..++.++..-. ..++.+.+..|.+ + .
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l-~---~ 151 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLP---PALEKLVLGRNRL-E---G 151 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCC---CCceEEEcCCCcC-C---c
Confidence 4588888888773322233444556666 58999999999999888888888876642 3488899998887 6 4
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
.....++..+..+++|++|+|++|.+.++++..+..++.+.+ +|+.|+|++|.|++ ...+.++..+..+. +|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~----~~~~~l~~~~~~~~---~L 223 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTD----EGASALAETLASLK---SL 223 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccCh----HHHHHHHHHhcccC---CC
Confidence 556678888888889999999999999999998888888875 99999999999986 22333334554444 48
Q ss_pred ceeehH--HHHhh----ccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 356 RLLNLS--HIAAS----LGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 356 ~~LnLs--~l~~a----gvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|+++ .+.+. +++.+ ..+|++|++.+|.+++.|+.++++++..+++|+++|+++|+++
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 888885 33332 12211 3688888888888888888888888888888888888888874
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=3.7e-15 Score=141.72 Aligned_cols=197 Identities=24% Similarity=0.249 Sum_probs=135.2
Q ss_pred ccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCC--hhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 199 Lq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~--~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
++.|.++++ .++.+...++..+..++ +|++|+++++.++ +.++..+..++.. . .+++++.+..+.+ . .
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~---~~L~~L~l~~~~~-~---~ 95 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTK-G---CGLQELDLSDNAL-G---P 95 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHh-c---CceeEEEccCCCC-C---h
Confidence 777777777 56666677777766664 7888888888887 6777766666654 2 4688888887777 3 2
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
..+..+..+..+ ++|++|++++|++.++++..+...+...+..|++|+|++|.|++ ..-...+..+..+.+ |
T Consensus 96 ~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~---L 167 (319)
T cd00116 96 DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG----ASCEALAKALRANRD---L 167 (319)
T ss_pred hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc----hHHHHHHHHHHhCCC---c
Confidence 345555555555 77888888888888888888888887773488888888888885 112222334433333 7
Q ss_pred ceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 356 RLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 356 ~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|+|+ .++.++.+ .++|+.|+|++|.+++.+.+.++..+..+++|++|++++|.++
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 777773 23333334 5677777777777777777777777777777777777777653
No 3
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.57 E-value=1.8e-16 Score=165.96 Aligned_cols=202 Identities=20% Similarity=0.178 Sum_probs=183.2
Q ss_pred ccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCccc
Q 015056 199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (414)
Q Consensus 199 Lq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~ 277 (414)
+..|+|..+ ..+.++..+++++..+. +|+.|+|++|.+++.|...||+.+++|. |-+|.|++..|.. + .+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l-~---~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSL-T---SEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccc-c---ccc
Confidence 555666666 66668999999999997 9999999999999999999999999997 9999999999998 6 789
Q ss_pred HHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhcc---CCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 278 ~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~---~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
+..++++|.++.+++.++++.|.+.+.|...++.+|.+ +.|++++|.|++|.+|+ .+|..++.++....+ .
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~~~--~ 234 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASGES--L 234 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhccch--h
Confidence 99999999999999999999999999999999999998 99999999999999998 889988889977764 4
Q ss_pred cceeehH--HHHhhccccC-------CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 355 LRLLNLS--HIAASLGKFF-------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 355 L~~LnLs--~l~~agvk~L-------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++.|++. .++|.|+..+ .++++.|+++.|.+++.|+..|++.+..-..+++|.+++|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 7778885 7777776666 5889999999999999999999999999899999999999874
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=7.8e-13 Score=133.51 Aligned_cols=183 Identities=19% Similarity=0.205 Sum_probs=100.5
Q ss_pred HHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHH------------
Q 015056 213 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE------------ 280 (414)
Q Consensus 213 ~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~------------ 280 (414)
..-+..+|+..+ .|+.|+||.|.+++.||+.+=+-+.+- ..+|+|-+..|+. . +.+-.-
T Consensus 81 L~~l~~aL~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s~----~~L~eL~L~N~Gl-g---~~ag~~l~~al~~l~~~k 151 (382)
T KOG1909|consen 81 LKMLSKALLGCP-KLQKLDLSDNAFGPKGIRGLEELLSSC----TDLEELYLNNCGL-G---PEAGGRLGRALFELAVNK 151 (382)
T ss_pred HHHHHHHHhcCC-ceeEeeccccccCccchHHHHHHHHhc----cCHHHHhhhcCCC-C---hhHHHHHHHHHHHHHHHh
Confidence 345556777776 777777777777777777666655552 3566666666665 4 333333
Q ss_pred -------------------------HHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccc
Q 015056 281 -------------------------LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (414)
Q Consensus 281 -------------------------Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~ 335 (414)
+|.++.+.++|+.+++..|-+..+|+-+|..++.|.+ .|+.|||.+|-+|..+
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~eg- 229 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEG- 229 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHH-
Confidence 4444444555555555555555555555555555555 5555555555555411
Q ss_pred ccCCCChhhhhhcCcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcE
Q 015056 336 KYDRSGPLFSLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVN 405 (414)
Q Consensus 336 ~~~c~~ls~aL~~nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~ 405 (414)
..++|.+|..-+ .|+.||++ ++.+|+-+. ..+|+.|++.+|-++.+|+.+|+.++..-+.|..
T Consensus 230 ---s~~LakaL~s~~---~L~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 230 ---SVALAKALSSWP---HLRELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred ---HHHHHHHhcccc---hheeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence 222333443222 25555552 333333332 4455666666666666666666666555555666
Q ss_pred EecCCCCC
Q 015056 406 INIRFKPI 413 (414)
Q Consensus 406 LdLs~N~i 413 (414)
|+|++|++
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 66666654
No 5
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.32 E-value=2.8e-13 Score=142.10 Aligned_cols=191 Identities=21% Similarity=0.199 Sum_probs=165.8
Q ss_pred chHhHHHHHHHHhhCCCCCcEEEcccCCCChhH---HHHHHhhhcCccccccc---cceeeccccccccCCCcccHHHHH
Q 015056 209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSF---VEGICRSLCSKRKRIHK---IENLSIDISSFIENCPSSVVVELV 282 (414)
Q Consensus 209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~---m~~LC~~L~~p~v~~C~---lq~lsl~tc~~~~~~~~~~~~~La 282 (414)
....+..+-..+..+. +++++.+.++.++..+ +....+.+.++- +. +.++++..|.+ . ...++.++
T Consensus 37 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~L~~~~l-~---~~~~~~l~ 108 (478)
T KOG4308|consen 37 GADTCRDLRSLLRRNT-TLTELVLQSCSLSGRGRCFVLELLELLREPL---NKLASLLHLSLANNRL-G---DRGAEELA 108 (478)
T ss_pred CccchHHHHHhhhhcc-chhhhhhhhhhccccccchHHHHHHhhcccc---chhhhHHHhhhhhCcc-c---cchHHHHH
Confidence 3355677778888886 9999999999999999 678888888887 55 78899999998 7 67899999
Q ss_pred HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS- 361 (414)
Q Consensus 283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs- 361 (414)
.+|.++.+|..|+|++|.++|+|++.|+.+|+++.|.+++|++..|.+++ ..|..++.+|..+.. |+.||++
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~----~g~~~l~~~L~~~~~---l~~l~l~~ 181 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS----EGAAPLAAVLEKNEH---LTELDLSL 181 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc----cchHHHHHHHhcccc---hhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 667778889988776 8899984
Q ss_pred -HHHhhccccC----------CCceeEEEeecccCCchhHHHHHHHHhcCCC-CcEEecCCCCCC
Q 015056 362 -HIAASLGKFF----------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELK-LVNINIRFKPIS 414 (414)
Q Consensus 362 -~l~~agvk~L----------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~-L~~LdLs~N~i~ 414 (414)
.+++.|...+ .+++++|+|..|++|+.+|..++.++....+ ++++++..|.++
T Consensus 182 n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 182 NGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred cccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 3333332222 6899999999999999999999999998888 999999999874
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=4.3e-11 Score=121.11 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=88.7
Q ss_pred chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecc---ccccccCCCcccHH---HHH
Q 015056 209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID---ISSFIENCPSSVVV---ELV 282 (414)
Q Consensus 209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~---tc~~~~~~~~~~~~---~La 282 (414)
++...+.+...+..- .+++.++|+||.++...++.+|..|.+.+ .++...|. +-+. . .++++ -|.
T Consensus 15 t~ed~~~v~~~~~~~-~s~~~l~lsgnt~G~EAa~~i~~~L~~~~----~L~~v~~sd~ftGR~-~---~Ei~e~L~~l~ 85 (382)
T KOG1909|consen 15 TEEDEKDVEEELEPM-DSLTKLDLSGNTFGTEAARAIAKVLASKK----ELREVNLSDMFTGRL-K---DEIPEALKMLS 85 (382)
T ss_pred hHhhhhhHHHHhccc-CceEEEeccCCchhHHHHHHHHHHHhhcc----cceeeehHhhhcCCc-H---HHHHHHHHHHH
Confidence 444444555555444 59999999999999999999999999876 35455555 4443 3 34444 456
Q ss_pred HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+|..+..|+.|+||+|.++++|++.|-.-|.+.. .|+.|-|.+|.|+.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGP 134 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCCh
Confidence 77777789999999999999999999888888866 99999999999997
No 7
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.75 E-value=1.7e-08 Score=100.48 Aligned_cols=189 Identities=18% Similarity=0.218 Sum_probs=133.0
Q ss_pred chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecc-ccccccCCCcccHHH---HHHH
Q 015056 209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPSSVVVE---LVSF 284 (414)
Q Consensus 209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~-tc~~~~~~~~~~~~~---Las~ 284 (414)
+...+.+.+..|..- .++++++||||.++...|+.||+.+...+ +=.+-+|+=- +.++ - .+.+.. |..+
T Consensus 15 T~eDvk~v~eel~~~-d~~~evdLSGNtigtEA~e~l~~~ia~~~--~L~vvnfsd~ftgr~-k---de~~~~L~~Ll~a 87 (388)
T COG5238 15 TKEDVKGVVEELEMM-DELVEVDLSGNTIGTEAMEELCNVIANVR--NLRVVNFSDAFTGRD-K---DELYSNLVMLLKA 87 (388)
T ss_pred ccchhhHHHHHHHhh-cceeEEeccCCcccHHHHHHHHHHHhhhc--ceeEeehhhhhhccc-H---HHHHHHHHHHHHH
Confidence 455566777777774 59999999999999999999999999865 1222222211 3332 1 344444 4566
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChh---hhhhcCc-----------
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL---FSLGAGK----------- 350 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls---~aL~~nk----------- 350 (414)
|-.|.+|+..+||+|.++.++...|..-+.++. .|..|-|++|.++.-+ .+-++ ++|+.||
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~NnGlGp~a----G~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLNNNGLGPIA----GGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCC-CceeEEeecCCCCccc----hhHHHHHHHHHHHHhhhccCCCceEE
Confidence 778899999999999999999999999999988 9999999999999722 22222 2334443
Q ss_pred --------------------ccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC
Q 015056 351 --------------------SLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE 400 (414)
Q Consensus 351 --------------------s~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N 400 (414)
++-+|+.+.+. -++..|. +-.-+|+.|||+.|-||-.|-.+||.||..=
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 22233333331 1111111 1166789999999999999999999999988
Q ss_pred CCCcEEecCC
Q 015056 401 LKLVNINIRF 410 (414)
Q Consensus 401 ~~L~~LdLs~ 410 (414)
+.|++|.++-
T Consensus 242 ~~lrEL~lnD 251 (388)
T COG5238 242 NLLRELRLND 251 (388)
T ss_pred chhhhccccc
Confidence 8899888753
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.38 E-value=3.8e-07 Score=101.17 Aligned_cols=174 Identities=22% Similarity=0.204 Sum_probs=105.1
Q ss_pred ccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 197 ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
-+|++|.|++..-..... ..+.++|++|+|++|.+.......+. .+ .+++.|.+..+.+ . ..
T Consensus 118 ~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~~~~~~p~~~~-~l-------~~L~~L~L~~n~l-~---~~ 179 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNMLSGEIPNDIG-SF-------SSLKVLDLGGNVL-V---GK 179 (968)
T ss_pred CCCCEEECcCCccccccC------ccccCCCCEEECcCCcccccCChHHh-cC-------CCCCEEECccCcc-c---cc
Confidence 367777776551110000 12346788888888876533222211 11 3467777777765 3 22
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~ 356 (414)
.+ ..+...++|+.|+|++|.+.... -..+.... +|++|+|++|.+++- ....+.... +|+
T Consensus 180 ~p----~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~-~L~~L~L~~n~l~~~--------~p~~l~~l~---~L~ 239 (968)
T PLN00113 180 IP----NSLTNLTSLEFLTLASNQLVGQI----PRELGQMK-SLKWIYLGYNNLSGE--------IPYEIGGLT---SLN 239 (968)
T ss_pred CC----hhhhhCcCCCeeeccCCCCcCcC----ChHHcCcC-CccEEECcCCccCCc--------CChhHhcCC---CCC
Confidence 22 23456778888888888875432 23344455 888888888888761 223454444 489
Q ss_pred eeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 357 LLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 357 ~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|+|+ .+...+.+ -++|++|+|++|.++...-. .+..-++|++|++++|.++
T Consensus 240 ~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGPIPP----SIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred EEECcCceeccccChhHhC--CCCCCEEECcCCeeeccCch----hHhhccCcCEEECcCCeec
Confidence 99985 23333444 57899999999988654322 3344578999999999763
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.27 E-value=1.2e-06 Score=97.26 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=23.9
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
-.+|+.|+|++|.++..-. ..+..-++|++|++++|.+
T Consensus 307 l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIP----VALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CCCCcEEECCCCccCCcCC----hhHhcCCCCCEEECcCCCC
Confidence 3567777777777664322 2344456778888877765
No 10
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=98.21 E-value=9.1e-07 Score=93.03 Aligned_cols=193 Identities=16% Similarity=0.060 Sum_probs=136.1
Q ss_pred cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhH------------------------HHHHHhhhcCccccccccceee
Q 015056 208 RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF------------------------VEGICRSLCSKRKRIHKIENLS 263 (414)
Q Consensus 208 ~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~------------------------m~~LC~~L~~p~v~~C~lq~ls 263 (414)
+++..+..++..=..+ .|++|+|+.|...++- ++.+.+.+..+++..=-..+++
T Consensus 199 lsskfis~l~~qsg~~--~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls 276 (553)
T KOG4242|consen 199 LSSKFISKLLIQSGRL--WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLS 276 (553)
T ss_pred hhhhHHHHhhhhhccc--cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhc
Confidence 3555555555222222 4788888888665554 5677788888764333344445
Q ss_pred ccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhc----------cCC-C--------------
Q 015056 264 IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL----------EAS-S-------------- 318 (414)
Q Consensus 264 l~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll----------~~~-C-------------- 318 (414)
.+.|+ ..++.+...+...+.++-.++ ||++...++.+|.++.+.-++- |+. |
T Consensus 277 ~ng~s--~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g 353 (553)
T KOG4242|consen 277 RNGTS--PSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFG 353 (553)
T ss_pred cCCCC--cccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccc
Confidence 55666 467899999999999999999 9999999999999999998881 111 2
Q ss_pred -CccEEeccCCCCCCcccccCCCChhhhhhcCcc------------------------------cCCcceeehH------
Q 015056 319 -SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS------------------------------LQSLRLLNLS------ 361 (414)
Q Consensus 319 -~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks------------------------------~~~L~~LnLs------ 361 (414)
.+|+|++++|.+.+.+... .++..+++ +.-++.++++
T Consensus 354 ~R~q~l~~rdnnldgeg~~v------gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka 427 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAV------GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA 427 (553)
T ss_pred eeeeEeeccccccccccccc------cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc
Confidence 7899999999998733211 12223332 2223333332
Q ss_pred ---HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 ---HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 ---~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
..-.+++. +.++++|+|++|++|+.|+..|+++++.|..|+.+-.+.|.+
T Consensus 428 ~l~s~in~l~s--tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 428 GLESAINKLLS--TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cHHHHHHhhcc--CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 22222333 788899999999999999999999999999999999999975
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.4e-06 Score=91.02 Aligned_cols=216 Identities=21% Similarity=0.233 Sum_probs=126.9
Q ss_pred HHHHHHhccCCC---CcCCC---CCCchHHHHHHHHHHHHHHHHHhhhccCCccccC---CCCCchHHHHHhhhhhhhcc
Q 015056 86 VWKKLFKTRWSG---FTDQI---EPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLI---SDINISDTILNYIGYEQQMN 156 (414)
Q Consensus 86 ~Wkrl~~~RW~~---~~~~~---~~~~Wkq~y~E~hlq~~l~eaae~a~~p~F~g~i---~~~~~~~~i~~~i~~~~~~~ 156 (414)
-|+|-|++|.|. +.++. .|.|--+.|-||-+++ +.|.. .+.+++.+-++.||++.-+.
T Consensus 49 dgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~~ery~e~-------------~s~~sd~~~~~si~nK~vE~iGfDki~a 115 (505)
T KOG3207|consen 49 DGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTFKERYYEK-------------YSYSSDLESVLSISNKQVEFIGFDKIAA 115 (505)
T ss_pred cceeeeeeecCCCccccCCccCCCCccHHHHHHHHHHHh-------------hcCCcchhhHhhhcCceeEEecHHHHHH
Confidence 489999999999 66664 2889999998887653 22222 33556666777788777654
Q ss_pred hhccccccccccccccccchhhhcccccccchhhhc---hhccc-cccceeeeec--cchHhHHHHHHHHhhCCCCCcEE
Q 015056 157 HLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQ---LLRES-KLQSLVLRWI--RFEEHVQALCKLLIQNSETLASL 230 (414)
Q Consensus 157 ~~~~~~s~l~~~~~~~~~yvr~l~l~~~l~~~~~~~---l~~~c-kLq~L~L~~~--~s~~~~~~L~~~L~~n~~tLt~L 230 (414)
=+ ++|+|| |-..|+| ++|+... -.+.| .+..|.|+.- -+-..+..++..| ++|+.|
T Consensus 116 kQ-sn~kkL-----------~~IsLdn--~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL----p~Le~L 177 (505)
T KOG3207|consen 116 KQ-SNLKKL-----------REISLDN--YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL----PSLENL 177 (505)
T ss_pred Hh-hhHHhh-----------hheeecC--ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhc----ccchhc
Confidence 33 456664 2222222 1111111 11222 3333444433 1112222333333 699999
Q ss_pred EcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHH
Q 015056 231 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 310 (414)
Q Consensus 231 ~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~ 310 (414)
+|+-|.|...-=...=+.+.| ++.|.++.|++ + |.++-..+...++|..|.|..|. +-+++.
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~-------lK~L~l~~CGl-s------~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~-- 239 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSH-------LKQLVLNSCGL-S------WKDVQWILLTFPSLEVLYLEANE--IILIKA-- 239 (505)
T ss_pred ccccccccCCccccchhhhhh-------hheEEeccCCC-C------HHHHHHHHHhCCcHHHhhhhccc--ccceec--
Confidence 999987654332222233333 34788889998 4 77899999999999999999995 111111
Q ss_pred HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH
Q 015056 311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (414)
Q Consensus 311 ~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs 361 (414)
.=..-.|.|++|||++|++-+ +.-. ..+ -.+.+|+.||++
T Consensus 240 -~~~~i~~~L~~LdLs~N~li~----~~~~---~~~---~~l~~L~~Lnls 279 (505)
T KOG3207|consen 240 -TSTKILQTLQELDLSNNNLID----FDQG---YKV---GTLPGLNQLNLS 279 (505)
T ss_pred -chhhhhhHHhhccccCCcccc----cccc---ccc---ccccchhhhhcc
Confidence 112345699999999999887 3222 122 233447777773
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.59 E-value=9.5e-06 Score=87.67 Aligned_cols=106 Identities=24% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------ 361 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------ 361 (414)
+++|+.|+||.|.+..-.-.. +.-.+ .|++|.|++|.|+. ..- .++...+ +|..|||+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~s----f~~L~-~Le~LnLs~Nsi~~----l~e----~af~~ls---sL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGS----FRVLS-QLEELNLSHNSIDH----LAE----GAFVGLS---SLHKLDLRSNELSW 379 (873)
T ss_pred cccceeEeccccccccCChhH----HHHHH-HhhhhcccccchHH----HHh----hHHHHhh---hhhhhcCcCCeEEE
Confidence 689999999999986432221 11222 78889999999986 111 2553334 49999993
Q ss_pred HHHhhccccC-CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 HIAASLGKFF-GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 ~l~~agvk~L-~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+.|+-+-|= =.+|++|.+.||.+.+--=+ |...=..|++||||+|.|
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr----Afsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR----AFSGLEALEHLDLGDNAI 428 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchh----hhccCcccceecCCCCcc
Confidence 3444333322 46789999999999875544 445568899999999987
No 13
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=97.37 E-value=0.00018 Score=47.82 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhcc
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLE 315 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~ 315 (414)
+++|+.|+|++|.++|+|++.|+.+|.+
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~~ 28 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999999875
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=9.3e-05 Score=75.11 Aligned_cols=128 Identities=24% Similarity=0.210 Sum_probs=76.3
Q ss_pred cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCccccc
Q 015056 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKY 337 (414)
Q Consensus 259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~ 337 (414)
+|++.+....+ + -..+--+|+-|+.|+.|.|-|+.|+|.-|. .+-..+ +|..|+|+.| .||+ .
T Consensus 187 lq~lDLS~s~i-t------~stl~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~-~L~~lnlsm~sG~t~----n 250 (419)
T KOG2120|consen 187 LQHLDLSNSVI-T------VSTLHGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNS-NLVRLNLSMCSGFTE----N 250 (419)
T ss_pred hHHhhcchhhe-e------HHHHHHHHHHHHhhhhccccccccCcHHHH----HHhccc-cceeeccccccccch----h
Confidence 55555554444 3 124566777778888888888888776443 344455 7778877765 4554 1
Q ss_pred CCCChhhhhhcCcccCCcceeehH------HHHhhccccCCCceeEEEeeccc--CCchhHHHHHHHHhcCCCCcEEecC
Q 015056 338 DRSGPLFSLGAGKSLQSLRLLNLS------HIAASLGKFFGTSVQVLNIGAIG--LGSSGFRVLQDGVTKELKLVNINIR 409 (414)
Q Consensus 338 ~c~~ls~aL~~nks~~~L~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~--lg~~gcqaLa~aL~~N~~L~~LdLs 409 (414)
+ + +.+. .|.++|..|||+ +...+.|...+-+|..|||+|++ |+.. .++..-.+-+.|++||||
T Consensus 251 ~---~-~ll~--~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 251 A---L-QLLL--SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred H---H-HHHH--HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccc
Confidence 0 1 2221 223457777774 22333444456677778887775 3333 666666677778888877
Q ss_pred CC
Q 015056 410 FK 411 (414)
Q Consensus 410 ~N 411 (414)
-|
T Consensus 322 D~ 323 (419)
T KOG2120|consen 322 DS 323 (419)
T ss_pred cc
Confidence 65
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.33 E-value=0.00018 Score=78.05 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=74.8
Q ss_pred CcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhH
Q 015056 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (414)
Q Consensus 227 Lt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ga 306 (414)
-..|||++|.|++-++.-.- --|. +|.+.+++=.+ + .+-++-....+|++|+|.+|.+..=-.
T Consensus 80 t~~LdlsnNkl~~id~~~f~---nl~n-----Lq~v~l~~N~L-t--------~IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFY---NLPN-----LQEVNLNKNEL-T--------RIPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred eeeeeccccccccCcHHHHh---cCCc-----ceeeeeccchh-h--------hcccccccccceeEEeeeccccccccH
Confidence 45799999988776655221 1222 55555554444 3 222333334456666666666643332
Q ss_pred HHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC---CCceeEEEee
Q 015056 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF---GTSVQVLNIG 381 (414)
Q Consensus 307 klL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L---~c~Lq~L~L~ 381 (414)
. .|.-.+ .|++||||.|.|+. .-- ..+...-+ +++|||+ .+.+-....+ + +|.+|.|+
T Consensus 143 e----~L~~l~-alrslDLSrN~is~----i~~----~sfp~~~n---i~~L~La~N~It~l~~~~F~~ln-sL~tlkLs 205 (873)
T KOG4194|consen 143 E----ELSALP-ALRSLDLSRNLISE----IPK----PSFPAKVN---IKKLNLASNRITTLETGHFDSLN-SLLTLKLS 205 (873)
T ss_pred H----HHHhHh-hhhhhhhhhchhhc----ccC----CCCCCCCC---ceEEeeccccccccccccccccc-hheeeecc
Confidence 2 223333 56666666666665 101 12222222 5666664 3333333222 3 66666666
Q ss_pred cccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 382 AIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 382 ~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.|+++..--.. .+.=++|+.|||-.|+|
T Consensus 206 rNrittLp~r~----Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 206 RNRITTLPQRS----FKRLPKLESLDLNRNRI 233 (873)
T ss_pred cCcccccCHHH----hhhcchhhhhhccccce
Confidence 66666543322 22335566666666655
No 16
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=97.31 E-value=0.00017 Score=47.97 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=25.3
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHh
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVT 398 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~ 398 (414)
+++|++|||++|.||++|+.+|+++|.
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999985
No 17
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=0.0014 Score=66.21 Aligned_cols=206 Identities=19% Similarity=0.099 Sum_probs=118.0
Q ss_pred cc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccc-----cccccceeecccccc
Q 015056 196 ES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISSF 269 (414)
Q Consensus 196 ~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v-----~~C~lq~lsl~tc~~ 269 (414)
.| ++|+.+|++-........+-..++.+...|.||-|+.|.+++.+=..|-.+|.|-.+ -.-.++-+..+.-++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 44 788888888744445555666666666688888888888888776655555443210 011233444444454
Q ss_pred ccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHH-HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhc
Q 015056 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF-SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348 (414)
Q Consensus 270 ~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~-~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~ 348 (414)
++- .-...|..|.+-+.|+.+++-.|-+.++|+-+|. .+|.-.. +|+.|||-+|-+|- ...++++.++..
T Consensus 170 -eng---s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~----~gS~~La~al~~ 240 (388)
T COG5238 170 -ENG---SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTL----EGSRYLADALCE 240 (388)
T ss_pred -ccC---cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhh----hhHHHHHHHhcc
Confidence 422 2223466667777888888888888888876654 4555555 88888888888886 334555555533
Q ss_pred CcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHH--HHHHHhcC-CCCcEEecCCCCC
Q 015056 349 GKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRV--LQDGVTKE-LKLVNINIRFKPI 413 (414)
Q Consensus 349 nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqa--La~aL~~N-~~L~~LdLs~N~i 413 (414)
=+ .|+.|+|. ++-++..+....+|+.|-..+|-+.-..-.. +-...+.+ +-|..|.+.+|+|
T Consensus 241 W~---~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 241 WN---LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred cc---hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 22 26666661 2222222222556666666655543333322 33333333 2244455555554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.15 E-value=0.00031 Score=78.65 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.9
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+|+.|++++|.|+. |-..+..=++|+.|+|++|+|+
T Consensus 422 ~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 422 SGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCCCC
Confidence 356667777777763 3333444568889999999875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.13 E-value=0.00076 Score=75.26 Aligned_cols=36 Identities=8% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
..+|+.|+|++|.|+..- ..+. ++|++|+|++|+|+
T Consensus 345 ~~sL~~L~Ls~N~L~~LP-----~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 345 PPELQVLDVSKNQITVLP-----ETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cCcccEEECCCCCCCcCC-----hhhc--CCcCEEECCCCcCC
Confidence 357888888888887421 1121 57899999998873
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.11 E-value=0.00073 Score=75.72 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=23.0
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|+.|+|++|.|+..-. .-++|+.|++++|.|+
T Consensus 382 ~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLT 415 (788)
T ss_pred cccceEEecCCcccCCCC--------cccCCCEEEccCCcCC
Confidence 467888888888774321 1246888888888764
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.07 E-value=0.0002 Score=66.59 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=10.7
Q ss_pred ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+|++|+|++|.+.+.+- + ..|..-++|++|++.+|.|
T Consensus 89 ~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp T--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GG
T ss_pred cCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcc
Confidence 44445555554444321 1 2233344455555555443
No 22
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=5.4e-05 Score=83.58 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=52.8
Q ss_pred HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEEeecccC
Q 015056 311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGL 385 (414)
Q Consensus 311 ~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~l 385 (414)
.+|.=.+ .++.|+||+|+++. |. .| +-+..|+||||+ .|-..+.. +|.|+.|+|++|.+
T Consensus 181 ~SLqll~-ale~LnLshNk~~~------v~----~L---r~l~~LkhLDlsyN~L~~vp~l~~~--gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 181 ESLQLLP-ALESLNLSHNKFTK------VD----NL---RRLPKLKHLDLSYNCLRHVPQLSMV--GCKLQLLNLRNNAL 244 (1096)
T ss_pred HHHHHHH-Hhhhhccchhhhhh------hH----HH---Hhcccccccccccchhccccccchh--hhhheeeeecccHH
Confidence 3343344 67777788888887 54 22 334457788875 22222223 78899999999999
Q ss_pred CchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 386 GSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 386 g~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+..=+ +.+=.+|..||++.|=|
T Consensus 245 ~tL~g------ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 245 TTLRG------IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred Hhhhh------HHhhhhhhccchhHhhh
Confidence 88533 23336688999998865
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.82 E-value=0.0026 Score=71.05 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=21.1
Q ss_pred ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|+.|++++|.|+.. -..+...+...+.+..|++++|.|+
T Consensus 389 sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence 355555555555431 1123333333466777888888764
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.76 E-value=0.00061 Score=69.55 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=70.5
Q ss_pred CcccEEEccCCCCC--chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056 289 RSLCSLKLRHCHLD--RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA 364 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~--d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~ 364 (414)
+-|+.++||+|.+. ||.+|+ -+ .++.|++|+|.|+. =+ .| ..+.+|++|||| .++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL-------~P-kir~L~lS~N~i~~------v~----nL---a~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL-------AP-KLRRLILSQNRIRT------VQ----NL---AELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchhhhhhhhhh-------cc-ceeEEeccccceee------eh----hh---hhcccceEeecccchhH
Confidence 77899999999885 666666 35 79999999999997 32 23 334459999996 222
Q ss_pred hhccccC-CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ASLGKFF-GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ~agvk~L-~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.-.+-.. =.++++|+|++|.+.+..+ |.+=-+|..||+++|+|
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N~iE~LSG------L~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQNKIETLSG------LRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhhhHhhhcCEeeeehhhhhHhhhhh------hHhhhhheeccccccch
Confidence 2111100 3567999999999888644 45556789999999987
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0031 Score=64.36 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=98.9
Q ss_pred ccchhhhchhccc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCcccccccccee
Q 015056 185 LCVEETCQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENL 262 (414)
Q Consensus 185 l~~~~~~~l~~~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~l 262 (414)
+.+.....++..| |||+|.|+.+.-+ ++++..++.|. +|++|+|++++ ++..++..+.++...= +.|
T Consensus 197 it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L-------~~L 265 (419)
T KOG2120|consen 197 ITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRL-------DEL 265 (419)
T ss_pred eeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhH-------hhc
Confidence 3333444567777 8888877766322 35677788885 99999998763 5566666666665433 355
Q ss_pred eccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC--CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCC
Q 015056 263 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH--LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 340 (414)
Q Consensus 263 sl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~--L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~ 340 (414)
-+.=|.+ + .+.-. +.+=.-..+|+.|+|+|.. |++.-+..|. ..-+ +|..||||+|.--. -
T Consensus 266 NlsWc~l-~---~~~Vt--v~V~hise~l~~LNlsG~rrnl~~sh~~tL~---~rcp-~l~~LDLSD~v~l~----~--- 328 (419)
T KOG2120|consen 266 NLSWCFL-F---TEKVT--VAVAHISETLTQLNLSGYRRNLQKSHLSTLV---RRCP-NLVHLDLSDSVMLK----N--- 328 (419)
T ss_pred CchHhhc-c---chhhh--HHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---HhCC-ceeeeccccccccC----c---
Confidence 5555665 3 12211 2222335778888888752 3333222222 2233 78899999885332 1
Q ss_pred ChhhhhhcCcccCCcceeehH----HHHhhccccC-CCceeEEEeeccc
Q 015056 341 GPLFSLGAGKSLQSLRLLNLS----HIAASLGKFF-GTSVQVLNIGAIG 384 (414)
Q Consensus 341 ~ls~aL~~nks~~~L~~LnLs----~l~~agvk~L-~c~Lq~L~L~~c~ 384 (414)
+...++-+.+. |+||.|+ ...+.++.+= -.++..||+-||-
T Consensus 329 ~~~~~~~kf~~---L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 DCFQEFFKFNY---LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHHHHHhcch---heeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 23345644444 9999996 3344444422 4677888887653
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.64 E-value=0.0029 Score=73.31 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=19.6
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF 410 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~ 410 (414)
++|+.|+|++|+++. +-..+..-++|+.|++++
T Consensus 846 ~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 846 TNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred cccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCC
Confidence 466777777777663 222344445666776665
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.61 E-value=0.00049 Score=75.45 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=84.4
Q ss_pred cEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC------
Q 015056 228 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL------ 301 (414)
Q Consensus 228 t~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L------ 301 (414)
+-.||++|+++++-+.. ...+--.|+-|-++...+|. +|++|+. .+.|.||.+++|.|
T Consensus 10 rGvDfsgNDFsg~~FP~-------~v~qMt~~~WLkLnrt~L~~-----vPeEL~~----lqkLEHLs~~HN~L~~vhGE 73 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPH-------DVEQMTQMTWLKLNRTKLEQ-----VPEELSR----LQKLEHLSMAHNQLISVHGE 73 (1255)
T ss_pred ecccccCCcCCCCcCch-------hHHHhhheeEEEechhhhhh-----ChHHHHH----HhhhhhhhhhhhhhHhhhhh
Confidence 34578888887543220 00011346667777777733 5555543 45556666665555
Q ss_pred -----------------CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-HH
Q 015056 302 -----------------DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (414)
Q Consensus 302 -----------------~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-~l 363 (414)
...|+.- -+.+.. .|++||||+|++++ |. ..|..-|+ +.+|||| .=
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~---diF~l~-dLt~lDLShNqL~E------vP---~~LE~AKn---~iVLNLS~N~ 137 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPT---DIFRLK-DLTILDLSHNQLRE------VP---TNLEYAKN---SIVLNLSYNN 137 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCc---hhcccc-cceeeecchhhhhh------cc---hhhhhhcC---cEEEEcccCc
Confidence 3333322 122233 67788888888888 54 55655566 7788885 11
Q ss_pred HhhccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 364 AASLGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 364 ~~agvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
-+..-..| =+-|--|||+.|++...--| ++.=.+|++|+||+|.+
T Consensus 138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChh
Confidence 11111111 23456678888887664443 34556788888888865
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.45 E-value=0.0022 Score=64.34 Aligned_cols=145 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (414)
Q Consensus 226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g 305 (414)
+|++|++++|++.. +.+.+..+. ++++|.+..+.+ + ++.........|+.|++++|++.+=-
T Consensus 141 nL~~L~l~~N~i~~-----l~~~~~~l~----~L~~L~l~~N~l-~--------~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 141 NLKELDLSDNKIES-----LPSPLRNLP----NLKNLDLSFNDL-S--------DLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred hcccccccccchhh-----hhhhhhccc----cccccccCCchh-h--------hhhhhhhhhhhhhheeccCCccccCc
Confidence 78888888887644 223344443 577777777776 4 34554446788889999999987765
Q ss_pred HHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeEEEee
Q 015056 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQVLNIG 381 (414)
Q Consensus 306 aklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~L~L~ 381 (414)
..+ .....|++|+++.|.+-. . . ..+...++ +..|.++ .+.+ ..... -.+++.|+++
T Consensus 203 ~~~------~~~~~L~~l~~~~N~~~~------~--~-~~~~~~~~---l~~l~l~~n~~~~~~~~~~~-l~~l~~L~~s 263 (394)
T COG4886 203 PEI------ELLSALEELDLSNNSIIE------L--L-SSLSNLKN---LSGLELSNNKLEDLPESIGN-LSNLETLDLS 263 (394)
T ss_pred hhh------hhhhhhhhhhhcCCccee------c--c-hhhhhccc---ccccccCCceeeeccchhcc-ccccceeccc
Confidence 543 223368889999995332 1 1 22323333 4444443 2221 22221 3459999999
Q ss_pred cccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 382 AIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 382 ~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+|.+++.-. +..-.+|++|++++|.+
T Consensus 264 ~n~i~~i~~------~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 264 NNQISSISS------LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccccc------ccccCccCEEeccCccc
Confidence 999999766 56678999999999876
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.35 E-value=0.0027 Score=59.17 Aligned_cols=85 Identities=25% Similarity=0.239 Sum_probs=15.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~ 302 (414)
|+..+++|+|.||.+ ..++ .|...- -.++.|.+..+.+ + .+ ..|...+.|+.|+|++|.+.
T Consensus 17 n~~~~~~L~L~~n~I--~~Ie----~L~~~l---~~L~~L~Ls~N~I-~--------~l-~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI--STIE----NLGATL---DKLEVLDLSNNQI-T--------KL-EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -------------------------S--TT----TT--EEE-TTS---S-----------TT----TT--EEE--SS---
T ss_pred ccccccccccccccc--cccc----chhhhh---cCCCEEECCCCCC-c--------cc-cCccChhhhhhcccCCCCCC
Confidence 445678888887743 1111 111100 1244555555554 3 11 23444566666666666665
Q ss_pred chhHHHHHHHhc-cCCCCccEEeccCCCCCC
Q 015056 303 RDFGRMVFSSLL-EASSSLSILDLSGNSIGG 332 (414)
Q Consensus 303 d~gaklL~~~Ll-~~~C~L~~LdLs~n~Lt~ 332 (414)
+-+. ++. ..+ +|++|+|++|+|.+
T Consensus 78 ~i~~-----~l~~~lp-~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 78 SISE-----GLDKNLP-NLQELYLSNNKISD 102 (175)
T ss_dssp S-CH-----HHHHH-T-T--EEE-TTS---S
T ss_pred cccc-----chHHhCC-cCCEEECcCCcCCC
Confidence 4321 111 123 56666666666665
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.18 E-value=0.0022 Score=70.51 Aligned_cols=101 Identities=24% Similarity=0.229 Sum_probs=54.6
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC--------------
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-------------- 354 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~-------------- 354 (414)
..|-.|+||+|+|+--- ...+..+ .||+|+||+|-+.- +-|...-++++
T Consensus 150 tDLLfLDLS~NrLe~LP-----PQ~RRL~-~LqtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLP-----PQIRRLS-MLQTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred HhHhhhccccchhhhcC-----HHHHHHh-hhhhhhcCCChhhH-----------HHHhcCccchhhhhhhcccccchhh
Confidence 45667889999874211 1112223 78899999997764 12222222222
Q ss_pred -----------cceeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 355 -----------LRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 355 -----------L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|+.+||| .+-+.+-+ =-+|++|||++|.+|.... ....=.+|.+||+|.|++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRNQL 280 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccCcCceeeeec-----cHHHHhhhhhhccccchh
Confidence 3334443 33444444 4566777777777765322 112234567777777765
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.12 E-value=0.0036 Score=70.91 Aligned_cols=71 Identities=18% Similarity=0.075 Sum_probs=39.4
Q ss_pred hhccccccccccccccccchhhhcccccccchhhhchhccccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCC
Q 015056 157 HLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK 236 (414)
Q Consensus 157 ~~~~~~s~l~~~~~~~~~yvr~l~l~~~l~~~~~~~l~~~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~ 236 (414)
|++-+.+.+ -..|...+.|-.+.-.=+ ++..-+.--++|++.++ .....++- ..+.-+.+|+-|+..+|.
T Consensus 206 c~rn~ls~l----~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis----~n~l~~lp-~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 206 CERNQLSEL----EISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDIS----HNNLSNLP-EWIGACANLEALNANHNR 275 (1081)
T ss_pred hhhcccceE----EecCcchheeeeccCcce-eeccccccccceeeecc----hhhhhcch-HHHHhcccceEecccchh
Confidence 444444443 334555555555543322 34444556677666433 44444444 444445699999999998
Q ss_pred C
Q 015056 237 L 237 (414)
Q Consensus 237 L 237 (414)
|
T Consensus 276 l 276 (1081)
T KOG0618|consen 276 L 276 (1081)
T ss_pred H
Confidence 7
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.056 Score=54.25 Aligned_cols=138 Identities=21% Similarity=0.180 Sum_probs=85.8
Q ss_pred cchhhhcccccccchh--hhchhccc-cccceeeeec--cchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHh
Q 015056 174 HYARCLRLQNALCVEE--TCQLLRES-KLQSLVLRWI--RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICR 247 (414)
Q Consensus 174 ~yvr~l~l~~~l~~~~--~~~l~~~c-kLq~L~L~~~--~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~ 247 (414)
.|.+.|.+...-...+ .......| +|+.|.+..+ .....-.... .+....+.|++|+++++. +++.++..+.+
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL-LLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh-hhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5777777777666665 33454444 7888877652 1111111111 244445689999999998 88888887766
Q ss_pred hhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC-chhHHHHHHHhccCCCCccEEecc
Q 015056 248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLS 326 (414)
Q Consensus 248 ~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~-d~gaklL~~~Ll~~~C~L~~LdLs 326 (414)
.. -++|.+.+..|.-.+ ...+.+....+++|++|+|++...- |.+...+.. ..+ .+++|.+.
T Consensus 267 ~c-------~~L~~L~l~~c~~lt------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~-~l~~l~~~ 329 (482)
T KOG1947|consen 267 RC-------PNLETLSLSNCSNLT------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK---NCP-NLRELKLL 329 (482)
T ss_pred hC-------CCcceEccCCCCccc------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH---hCc-chhhhhhh
Confidence 51 247788877777214 3478888888899999999977764 555555422 222 45555544
Q ss_pred CCC
Q 015056 327 GNS 329 (414)
Q Consensus 327 ~n~ 329 (414)
...
T Consensus 330 ~~~ 332 (482)
T KOG1947|consen 330 SLN 332 (482)
T ss_pred hcC
Confidence 443
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.75 E-value=0.011 Score=68.57 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=18.9
Q ss_pred hccccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccC
Q 015056 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC 235 (414)
Q Consensus 194 ~~~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~ 235 (414)
+.-.+|+.|.+.+..-. .+-.. +.+.++|+.|+|+++
T Consensus 608 f~~~~L~~L~L~~s~l~----~L~~~-~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 608 FRPENLVKLQMQGSKLE----KLWDG-VHSLTGLRNIDLRGS 644 (1153)
T ss_pred CCccCCcEEECcCcccc----ccccc-cccCCCCCEEECCCC
Confidence 34456666666654111 11111 234567788887765
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.73 E-value=0.00037 Score=66.52 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=99.9
Q ss_pred eccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeec---cccccccCCCcccHHHHH
Q 015056 206 WIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSI---DISSFIENCPSSVVVELV 282 (414)
Q Consensus 206 ~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl---~tc~~~~~~~~~~~~~La 282 (414)
.+.|..++.++|.+ ++.|.|.|+||++.- ..|.. -.+.++++ ..-.+ + ++-
T Consensus 19 giSsf~~~~gLf~~-----s~ITrLtLSHNKl~~----------vppni--a~l~nlevln~~nnqi-e--------~lp 72 (264)
T KOG0617|consen 19 GISSFEELPGLFNM-----SNITRLTLSHNKLTV----------VPPNI--AELKNLEVLNLSNNQI-E--------ELP 72 (264)
T ss_pred ccccHhhcccccch-----hhhhhhhcccCceee----------cCCcH--HHhhhhhhhhcccchh-h--------hcC
Confidence 34555666666543 578999999998742 22221 22223332 23333 3 555
Q ss_pred HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc-cCCcceeehH
Q 015056 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS-LQSLRLLNLS 361 (414)
Q Consensus 283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks-~~~L~~LnLs 361 (414)
--+++-+.|++|+++-|+| .++=++.-.-+ .|+.|||++|++.+ . .|--|-. +..|+-|.|+
T Consensus 73 ~~issl~klr~lnvgmnrl-----~~lprgfgs~p-~levldltynnl~e------~-----~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 73 TSISSLPKLRILNVGMNRL-----NILPRGFGSFP-ALEVLDLTYNNLNE------N-----SLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhchhhhheecchhhh-----hcCccccCCCc-hhhhhhcccccccc------c-----cCCcchhHHHHHHHHHhc
Confidence 6667889999999998887 34445556667 89999999999998 2 2222211 3336666664
Q ss_pred -----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 -----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 -----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+--..++ =++||-|.++.|.+-+. -+-+..=+.|++|+|-+|++
T Consensus 136 dndfe~lp~dvg~--lt~lqil~lrdndll~l-----pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 136 DNDFEILPPDVGK--LTNLQILSLRDNDLLSL-----PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred CCCcccCChhhhh--hcceeEEeeccCchhhC-----cHHHHHHHHHHHHhccccee
Confidence 33334456 68899999999987542 23333335688999999886
No 35
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.69 E-value=0.0048 Score=39.09 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=19.6
Q ss_pred CCceeEEEeecccCCchhHHHHHH
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQD 395 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~ 395 (414)
+++|++|+|++|.+|++|+++||+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 368999999999999999999985
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.18 E-value=0.0042 Score=70.45 Aligned_cols=88 Identities=25% Similarity=0.227 Sum_probs=56.8
Q ss_pred CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (414)
Q Consensus 226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g 305 (414)
+|++|...+|.|- ....+|. .-+||++.++.-.+ + .+.+.+..+.+|+.++...|.|-.--
T Consensus 220 ~l~~L~a~~n~l~--------~~~~~p~--p~nl~~~dis~n~l-~--------~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 220 SLTALYADHNPLT--------TLDVHPV--PLNLQYLDISHNNL-S--------NLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred chheeeeccCcce--------eeccccc--cccceeeecchhhh-h--------cchHHHHhcccceEecccchhHHhhH
Confidence 5666666666543 3344443 35688888888777 5 57788999999999999999993332
Q ss_pred HHHHHH-Hh----------------ccCCCCccEEeccCCCCCC
Q 015056 306 GRMVFS-SL----------------LEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 306 aklL~~-~L----------------l~~~C~L~~LdLs~n~Lt~ 332 (414)
.++-+. .| +.+--.|++|||..|+|.+
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 222211 11 2222267778888887776
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.14 E-value=0.032 Score=55.99 Aligned_cols=117 Identities=22% Similarity=0.193 Sum_probs=59.2
Q ss_pred cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCC--CCCchhHHHHHHHhccCCCCccEEeccCCC-CCCccc
Q 015056 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLS 335 (414)
Q Consensus 259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N--~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~ 335 (414)
++.+.+..|.... ...+......+..|+.|+++++ ...+.+..... +...--.|++|+|+.+. +++.+
T Consensus 190 L~~l~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~- 260 (482)
T KOG1947|consen 190 LKRLSLSGCSKIT------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG- 260 (482)
T ss_pred hhHhhhcccccCC------hhhHHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh-
Confidence 6677777665533 1127777777888888888762 22222222211 22222267788888887 66611
Q ss_pred ccCCCChhhhhhcCcccCCcceeehH---HHHhhccccC--CCc-eeEEEeecccCC-chhHHHH
Q 015056 336 KYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFF--GTS-VQVLNIGAIGLG-SSGFRVL 393 (414)
Q Consensus 336 ~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~agvk~L--~c~-Lq~L~L~~c~lg-~~gcqaL 393 (414)
+ .+++.. ..+|++|++. .+-+.|...+ .|+ ||+|+|++|..- +.|=.++
T Consensus 261 ------l-~~l~~~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 261 ------L-SALASR--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred ------H-HHHHhh--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 2 122221 1235565542 1222222222 444 778888777654 3333333
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.92 E-value=0.029 Score=40.91 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=29.3
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++||+|+|++|++++-.. .+..=++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~-----~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-----ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-----HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCc-----hHhCCCCCCEEEecCCCCC
Confidence 478999999999998543 3677789999999999985
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.89 E-value=0.0057 Score=62.67 Aligned_cols=80 Identities=26% Similarity=0.309 Sum_probs=44.4
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-HHHh
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAA 365 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-~l~~ 365 (414)
-...+..|+||.|.+.- +..|-+.+ +|+.||||+|.++. |... +.. +-+++.|+|+ ..-+
T Consensus 305 L~Pkir~L~lS~N~i~~------v~nLa~L~-~L~~LDLS~N~Ls~------~~Gw--h~K----LGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRT------VQNLAELP-QLQLLDLSGNLLAE------CVGW--HLK----LGNIKTLKLAQNKIE 365 (490)
T ss_pred hccceeEEeccccceee------ehhhhhcc-cceEeecccchhHh------hhhh--Hhh----hcCEeeeehhhhhHh
Confidence 34566777777777632 34466666 77777777777776 4422 111 1235567774 1111
Q ss_pred ---hccccCCCceeEEEeecccCCc
Q 015056 366 ---SLGKFFGTSVQVLNIGAIGLGS 387 (414)
Q Consensus 366 ---agvk~L~c~Lq~L~L~~c~lg~ 387 (414)
.+.| =-+|..||+++|++..
T Consensus 366 ~LSGL~K--LYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 366 TLSGLRK--LYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhhhHh--hhhheeccccccchhh
Confidence 1222 3456677777776654
No 40
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.84 E-value=0.015 Score=36.80 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.6
Q ss_pred CCcccEEEccCCCCCchhHHHHHH
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFS 311 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~ 311 (414)
|++|++|+|++|++.++|++.|+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 578999999999999999998863
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.39 E-value=0.082 Score=58.93 Aligned_cols=41 Identities=32% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
..+|++|.+++-.+..+---.+|..+ -+|.+||+|+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sF----pNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASF----PNLRSLDISGTNISN 187 (699)
T ss_pred CcccceEEecCceecchhHHHHhhcc----CccceeecCCCCccC
Confidence 45555666666555444422223322 255566666666665
No 42
>PLN03150 hypothetical protein; Provisional
Probab=94.08 E-value=0.097 Score=57.20 Aligned_cols=102 Identities=30% Similarity=0.315 Sum_probs=57.0
Q ss_pred cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------HH
Q 015056 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------HI 363 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------~l 363 (414)
.++.|+|++|.+.-..- ..+.+.+ .|++|+|++|.|++.+ ...+.... +|+.|||+ .+
T Consensus 419 ~v~~L~L~~n~L~g~ip----~~i~~L~-~L~~L~Ls~N~l~g~i--------P~~~~~l~---~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP----NDISKLR-HLQSINLSGNSIRGNI--------PPSLGSIT---SLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEEECCCCCccccCC----HHHhCCC-CCCEEECCCCcccCcC--------ChHHhCCC---CCCEEECCCCCCCCCC
Confidence 36777777777742211 2233444 7778888888777522 12333333 37777774 22
Q ss_pred HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 364 ~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
-+.+.+ -.+|+.|+|++|.++..--..++.. -.++..+++++|.
T Consensus 483 P~~l~~--L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQ--LTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred chHHhc--CCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 233334 4567888888887765444444332 1345667777664
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.85 E-value=0.089 Score=38.31 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=26.9
Q ss_pred cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
+|++|+|++|++.+=.. .+...+ .|++|++++|.|++
T Consensus 2 ~L~~L~l~~N~i~~l~~-----~l~~l~-~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-----ELSNLP-NLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGG-----HGTTCT-TSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCc-----hHhCCC-CCCEEEecCCCCCC
Confidence 68888899998876222 266677 88899999998887
No 44
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=93.80 E-value=0.042 Score=55.21 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCCC--CCcccCCChhhHHHHHhcCCch-hhhhhhccCCccccCCCCCCCcccccCcccccCCCc
Q 015056 7 LISLAALAVKRELLLGDDV--IPYVYELPADLFDILLTCLPPL-ALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNF 83 (414)
Q Consensus 7 L~~lC~~~i~~~~~~~~~~--~P~~~~Lp~~~~~~v~~~Lpp~-aL~~l~~~~p~~~~~~~~~~~~~~~~~~kr~r~~~~ 83 (414)
.+-+=.|.+..+..-++.+ -|.+-+||.|.+--|+-|||.. -|.++..+.|. -+.+..++-
T Consensus 178 ~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~et--l~~l~~e~~-------------- 241 (332)
T KOG3926|consen 178 ETILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWET--LAKLSEERR-------------- 241 (332)
T ss_pred HHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHH--HHHHHHHHH--------------
Confidence 3445566777777665443 3789999999999999999976 44444433332 012322332
Q ss_pred hHHHHHHHhccCCC-------CcCCCCCCchHHHHHH
Q 015056 84 NTVWKKLFKTRWSG-------FTDQIEPVDWQQRYWE 113 (414)
Q Consensus 84 ~~~Wkrl~~~RW~~-------~~~~~~~~~Wkq~y~E 113 (414)
.||.||+-+... +.+--..-|||||||.
T Consensus 242 --iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~ 276 (332)
T KOG3926|consen 242 --IWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ 276 (332)
T ss_pred --HHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence 899999988876 1111113679999995
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.49 E-value=0.033 Score=58.84 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=37.0
Q ss_pred cccccchhhhcccccccchh--hhchhccc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccC
Q 015056 170 QQFGHYARCLRLQNALCVEE--TCQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC 235 (414)
Q Consensus 170 ~~~~~yvr~l~l~~~l~~~~--~~~l~~~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~ 235 (414)
..+|.|.|.|++..--++-. .....++| ++++|.+..+. .-.+..+..+.++.+.|+||+|..|
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSC 200 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhccc
Confidence 56778888888887665422 22334456 56666666552 1123344455555566666666663
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.047 Score=58.03 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=61.9
Q ss_pred cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch-hHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (414)
Q Consensus 259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~-gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~ 337 (414)
+++.++..|.. + .+... ...+.+..++.|+||+|-+-.- -+.-+++-| + +|+.|.||.|.+.. .
T Consensus 123 L~~IsLdn~~V-~----~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL---p-~Le~LNls~Nrl~~----~ 187 (505)
T KOG3207|consen 123 LREISLDNYRV-E----DAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL---P-SLENLNLSSNRLSN----F 187 (505)
T ss_pred hhheeecCccc-c----ccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhc---c-cchhcccccccccC----C
Confidence 56666766665 3 11111 5666677777777777766432 223333333 3 56667777776654 2
Q ss_pred CCCChhhhhhcCcccCCcceeehH-------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056 338 DRSGPLFSLGAGKSLQSLRLLNLS-------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF 410 (414)
Q Consensus 338 ~c~~ls~aL~~nks~~~L~~LnLs-------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~ 410 (414)
..+-. .. .++.|+.|.|+ .++.-+.. -.++..|+|..|. +.+.++-... .-++|++|||++
T Consensus 188 ~~s~~--~~----~l~~lK~L~l~~CGls~k~V~~~~~~--fPsl~~L~L~~N~--~~~~~~~~~~--i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 188 ISSNT--TL----LLSHLKQLVLNSCGLSWKDVQWILLT--FPSLEVLYLEANE--IILIKATSTK--ILQTLQELDLSN 255 (505)
T ss_pred ccccc--hh----hhhhhheEEeccCCCCHHHHHHHHHh--CCcHHHhhhhccc--ccceecchhh--hhhHHhhccccC
Confidence 11101 00 22334455551 33333333 4555666666653 1112221111 114678888888
Q ss_pred CCC
Q 015056 411 KPI 413 (414)
Q Consensus 411 N~i 413 (414)
|++
T Consensus 256 N~l 258 (505)
T KOG3207|consen 256 NNL 258 (505)
T ss_pred Ccc
Confidence 765
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.43 E-value=0.18 Score=56.34 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHhcC
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCL 44 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~~L 44 (414)
+|+|..+-.+.||..+..|.-.+ ..+.|+++--.+|-+.|
T Consensus 2 ~~sl~~~a~~~ia~~i~ng~y~~-~~~~ld~~sSn~i~~~l 41 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQNGSYNN-LQYELDPKSSNKIYSEL 41 (699)
T ss_pred CCchhhhhHHHHHHHHhcCCccc-cceecChhhhHHHHHHH
Confidence 47899999999999998765555 45777777776666543
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.21 E-value=0.067 Score=40.27 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=10.0
Q ss_pred CccEEeccCCCCCC
Q 015056 319 SLSILDLSGNSIGG 332 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~ 332 (414)
+|++|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~l~~ 15 (61)
T PF13855_consen 2 NLESLDLSNNKLTE 15 (61)
T ss_dssp TESEEEETSSTESE
T ss_pred cCcEEECCCCCCCc
Confidence 56777777777775
No 49
>PLN03150 hypothetical protein; Provisional
Probab=93.16 E-value=0.11 Score=56.94 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=56.2
Q ss_pred CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H----HHhhccccCCCceeEEEeecccCCchhHHH
Q 015056 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H----IAASLGKFFGTSVQVLNIGAIGLGSSGFRV 392 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~----l~~agvk~L~c~Lq~L~L~~c~lg~~gcqa 392 (414)
.++.|+|++|.|++- +...+.... +|++|+|+ . +-..+.. -.+|+.|+|+.|.+...-=..
T Consensus 419 ~v~~L~L~~n~L~g~--------ip~~i~~L~---~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGF--------IPNDISKLR---HLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCCcccc--------CCHHHhCCC---CCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCCCCCCCchH
Confidence 488999999999871 223454444 49999995 2 2223444 578999999999998543333
Q ss_pred HHHHHhcCCCCcEEecCCCCCC
Q 015056 393 LQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 393 La~aL~~N~~L~~LdLs~N~i~ 414 (414)
+..=++|++|||++|+++
T Consensus 486 ----l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 486 ----LGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ----HhcCCCCCEEECcCCccc
Confidence 344578999999999874
No 50
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=92.80 E-value=0.22 Score=42.73 Aligned_cols=66 Identities=26% Similarity=0.478 Sum_probs=51.1
Q ss_pred cccCCChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC-CcCCCC--
Q 015056 28 YVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG-FTDQIE-- 103 (414)
Q Consensus 28 ~~~~Lp~~~~~~v~~~Lpp~aL~~l~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~-~~~~~~-- 103 (414)
.|.++|-+++.-|+.+.+|.-|..++..-|. + .+-| .-|+++++..-|. ...+.-
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~-----l~~~td----------------eLW~~~i~rdFp~~~~~~~~~~ 61 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPH-----LIEDTD----------------ELWKKLIKRDFPEESKRQKPKE 61 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCC-----cchhhH----------------HHHHHHHHhHCcChhhcccccc
Confidence 3678999999999999999999999977665 5 2222 3899999999997 222211
Q ss_pred CCchHHHHHHH
Q 015056 104 PVDWQQRYWEA 114 (414)
Q Consensus 104 ~~~Wkq~y~E~ 114 (414)
+.+|+.+|..-
T Consensus 62 ~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 62 PESWRELYEKL 72 (109)
T ss_pred cchHHHHHHHH
Confidence 67999999863
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.71 E-value=0.053 Score=60.88 Aligned_cols=121 Identities=25% Similarity=0.170 Sum_probs=66.0
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC--cccccCCCCh---------hhhhhcCcccC
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG--WLSKYDRSGP---------LFSLGAGKSLQ 353 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~--wl~~~~c~~l---------s~aL~~nks~~ 353 (414)
|.=.+.|.+|+|++||+.+ |..|++-+ .|.+|||++|+++- -++...|. + ...|.--.++.
T Consensus 183 Lqll~ale~LnLshNk~~~------v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK------VDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLK 254 (1096)
T ss_pred HHHHHHhhhhccchhhhhh------hHHHHhcc-cccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhh
Confidence 3334677888899998865 34566655 78888888888874 22222232 1 01111112334
Q ss_pred CcceeehH-HHHhhcc--ccC--CCceeEEEeecccCC--chhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 354 SLRLLNLS-HIAASLG--KFF--GTSVQVLNIGAIGLG--SSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 354 ~L~~LnLs-~l~~agv--k~L--~c~Lq~L~L~~c~lg--~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+|.+|||+ .+-..-. .+| =..|+.|+|.||-+- +.==++.|.-|-.|..=+.+.|.+-.|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l 321 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKAL 321 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceec
Confidence 48888884 1110000 111 245788888888652 222266677777665555555554443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.38 E-value=0.014 Score=59.87 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+++.+.+|++...+ ..+....++..|++..|+++
T Consensus 234 L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCcccccc-----ccccccccccccchhhcccc
Confidence 889999999998876 67788889999999999874
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.23 E-value=0.087 Score=39.64 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=23.8
Q ss_pred cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
+|+.|+|++|++..=... .+...+ .|++|+|++|.|+.
T Consensus 2 ~L~~L~l~~n~l~~i~~~----~f~~l~-~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD----SFSNLP-NLETLDLSNNNLTS 39 (61)
T ss_dssp TESEEEETSSTESEECTT----TTTTGT-TESEEEETSSSESE
T ss_pred cCcEEECCCCCCCccCHH----HHcCCC-CCCEeEccCCccCc
Confidence 577788888877533221 122233 77888888888876
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.91 E-value=0.059 Score=55.40 Aligned_cols=41 Identities=34% Similarity=0.369 Sum_probs=19.2
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
+.+..+|++|+|++|++.+ ..+|-... .|+.|++++|.|+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~------i~~l~~l~-~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITK------LEGLSTLT-LLKELNLSGNLISD 154 (414)
T ss_pred hhhhhcchheecccccccc------ccchhhcc-chhhheeccCcchh
Confidence 4445555555555555543 12222222 25555555555554
No 55
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=90.35 E-value=0.73 Score=47.65 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=92.4
Q ss_pred HHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056 213 VQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (414)
Q Consensus 213 ~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL 291 (414)
+++.-.-+-.|-++|++.++..+. +.....+..+++|+..+ .++-|++-..+. . ..+...+|.+|..|++|
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt----~vk~Fsla~tr~-~---d~vA~a~a~ml~~n~sl 257 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNT----HVKKFSLANTRS-S---DPVAFAIAEMLKENKSL 257 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCc----hhhhhhhhcccC-C---chhHHHHHHHHhhcchh
Confidence 455566777787789999887764 34444668899998887 366788886665 3 56777899999999999
Q ss_pred cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (414)
Q Consensus 292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks 351 (414)
++|++.+|.+...|...+..+|+... +|..|- -+|+.. |+++..-...+..|..|-+
T Consensus 258 ~slnvesnFItg~gi~a~~~al~~n~-tl~el~-~dnqrq-~lg~~vemeia~~leen~s 314 (353)
T KOG3735|consen 258 TSLNVESNFITGLGIMALLRALQSNK-SLTELK-NDNQRQ-VLGNAVEMEIALELEENAS 314 (353)
T ss_pred hheeccccccccHHHHHHHHHHhccc-hhhHhh-hhhHHh-hcccHHHHHHHHHHHhccc
Confidence 99999999999999999999998888 666653 355555 5543333333445555544
No 56
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.93 E-value=0.25 Score=52.53 Aligned_cols=44 Identities=27% Similarity=0.081 Sum_probs=31.1
Q ss_pred HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+++.-+.|+.|+|+.|.|-|--..+ -... .||+||||+|.+-.
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~-----~~lv-~Lq~LnlS~NrFr~ 472 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEM-----GSLV-RLQTLNLSFNRFRM 472 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhh-----hhhh-hhheeccccccccc
Confidence 45666789999999999886533322 1112 58999999997764
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.01 E-value=0.25 Score=49.61 Aligned_cols=107 Identities=25% Similarity=0.260 Sum_probs=54.9
Q ss_pred HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS- 361 (414)
Q Consensus 283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs- 361 (414)
.-+.....|+.|++++|++.+-..-.- .++ .|+.|++++|+|+. .... ... .+.|..|.++
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~~-~L~~L~ls~N~i~~----l~~~-----~~~---~~~L~~l~~~~ 218 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSDLPKLLS-----NLS-NLNNLDLSGNKISD----LPPE-----IEL---LSALEELDLSN 218 (394)
T ss_pred hhhhccccccccccCCchhhhhhhhhh-----hhh-hhhheeccCCcccc----Cchh-----hhh---hhhhhhhhhcC
Confidence 345556666666666666644332211 333 56666666666665 2121 000 0113333332
Q ss_pred ----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 362 ----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 362 ----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
..-....+ -.++..|.+..|.+++. -..+..-..|+.|++++|.|+
T Consensus 219 N~~~~~~~~~~~--~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 219 NSIIELLSSLSN--LKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred Ccceecchhhhh--cccccccccCCceeeec-----cchhccccccceecccccccc
Confidence 11111223 45666666777777664 223333455999999999874
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.49 E-value=0.82 Score=48.55 Aligned_cols=148 Identities=13% Similarity=0.237 Sum_probs=82.6
Q ss_pred cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhc
Q 015056 208 RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS 287 (414)
Q Consensus 208 ~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lss 287 (414)
..+.+.++....-+....++++|++++|.|..- . ..| .+++.|.+..|.-.+ ..+. .+
T Consensus 35 ~~~~e~r~~a~~r~~~~~~l~~L~Is~c~L~sL--P------~LP----~sLtsL~Lsnc~nLt----sLP~----~L-- 92 (426)
T PRK15386 35 ETSAEIRSEITPQIEEARASGRLYIKDCDIESL--P------VLP----NELTEITIENCNNLT----TLPG----SI-- 92 (426)
T ss_pred CCchHHHHHHHHHHHHhcCCCEEEeCCCCCccc--C------CCC----CCCcEEEccCCCCcc----cCCc----hh--
Confidence 445555655555555556899999999865321 0 122 358888888766533 2222 22
Q ss_pred CCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHH---H
Q 015056 288 GRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH---I 363 (414)
Q Consensus 288 n~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~---l 363 (414)
-.+|+.|+++++ .+. . -|+ +|++|+|+++.+.. + ..|- ++|+.|.+.. .
T Consensus 93 P~nLe~L~Ls~Cs~L~---------s--LP~-sLe~L~L~~n~~~~---------L-~~LP-----ssLk~L~I~~~n~~ 145 (426)
T PRK15386 93 PEGLEKLTVCHCPEIS---------G--LPE-SVRSLEIKGSATDS---------I-KNVP-----NGLTSLSINSYNPE 145 (426)
T ss_pred hhhhhheEccCccccc---------c--ccc-ccceEEeCCCCCcc---------c-ccCc-----chHhheeccccccc
Confidence 257899999988 442 1 144 89999988766543 1 1121 1244555410 0
Q ss_pred -HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056 364 -AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFK 411 (414)
Q Consensus 364 -~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N 411 (414)
....-..|=.+|+.|++++|.... +-..|. .+|++|+++.|
T Consensus 146 ~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 146 NQARIDNLISPSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccCCcccEEEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 000111234678888888777542 111122 46777777765
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.35 E-value=0.47 Score=48.96 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=19.8
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
++++.++.|+|++|++.|.. -+..-|.+.| .|++|.||+|.+.+
T Consensus 68 ~~~~~v~elDL~~N~iSdWs--eI~~ile~lP-~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWS--EIGAILEQLP-ALTTLNLSCNSLSS 111 (418)
T ss_pred HHhhhhhhhhcccchhccHH--HHHHHHhcCc-cceEeeccCCcCCC
Confidence 33445555555555554432 1222333444 45555555555543
No 60
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.21 E-value=0.43 Score=50.84 Aligned_cols=85 Identities=29% Similarity=0.404 Sum_probs=57.9
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HH
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HI 363 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l 363 (414)
.+|+.|++|.|.+ |.+=.-+-.+. .++++-.++|+|++ ..-+ .+ +++.+|+.|||+ .+
T Consensus 458 v~Lq~LnlS~NrF-----r~lP~~~y~lq-~lEtllas~nqi~~----vd~~----~l---~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 458 VRLQTLNLSFNRF-----RMLPECLYELQ-TLETLLASNNQIGS----VDPS----GL---KNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred hhhheeccccccc-----ccchHHHhhHH-HHHHHHhccccccc----cChH----Hh---hhhhhcceeccCCCchhhC
Confidence 3499999999976 33223333333 77888889999997 3332 23 566679999994 33
Q ss_pred HhhccccCCCceeEEEeecccCCchhHHH
Q 015056 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRV 392 (414)
Q Consensus 364 ~~agvk~L~c~Lq~L~L~~c~lg~~gcqa 392 (414)
--.+++ -++|+.|+|+||-|--.-.|.
T Consensus 521 Pp~Lgn--mtnL~hLeL~gNpfr~Pr~~i 547 (565)
T KOG0472|consen 521 PPILGN--MTNLRHLELDGNPFRQPRHQI 547 (565)
T ss_pred Chhhcc--ccceeEEEecCCccCCCHHHH
Confidence 333556 788999999999887544443
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.44 E-value=0.61 Score=48.16 Aligned_cols=168 Identities=19% Similarity=0.082 Sum_probs=108.6
Q ss_pred cccchhhhchhccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCcccccccccee
Q 015056 184 ALCVEETCQLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 262 (414)
Q Consensus 184 ~l~~~~~~~l~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~l 262 (414)
+=+++++.. +..-+|.+|+|-.. .+-...+.+.. +++-+|+|+++.|++++--.+.=|..=-++.
T Consensus 109 L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~----~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~--------- 174 (418)
T KOG2982|consen 109 LSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLD----DLPKVTELHMSDNSLRQLNLDDNCIEDWSTE--------- 174 (418)
T ss_pred CCCccccCc-ccccceEEEEEcCCCCChhhhhhhhh----cchhhhhhhhccchhhhhccccccccccchh---------
Confidence 334544333 45678888888777 66666555444 4489999999999887766554444434444
Q ss_pred eccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCCh
Q 015056 263 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342 (414)
Q Consensus 263 sl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~l 342 (414)
+.|=.+ .+|+.+-|.+.-..-.--+++..+-+.++++.++-+.- +---++ .+.-|.|+-|+|++|++ +
T Consensus 175 -v~tlh~-~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p-~~~~LnL~~~~idswas------v 242 (418)
T KOG2982|consen 175 -VLTLHQ-LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEK---GSEPFP-SLSCLNLGANNIDSWAS------V 242 (418)
T ss_pred -hhhhhc-CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcc---cCCCCC-cchhhhhcccccccHHH------H
Confidence 233344 55666788888888888899999999999998876643 222233 55678899999999885 2
Q ss_pred hhhhhcCcccCCcceeehH--HHHhhccccC--------CCceeEEEee
Q 015056 343 LFSLGAGKSLQSLRLLNLS--HIAASLGKFF--------GTSVQVLNIG 381 (414)
Q Consensus 343 s~aL~~nks~~~L~~LnLs--~l~~agvk~L--------~c~Lq~L~L~ 381 (414)
.+|..-- .|+-|-++ ++-|++-..- =+++|.||=+
T Consensus 243 -D~Ln~f~---~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 243 -DALNGFP---QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred -HHHcCCc---hhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4553333 35555554 5555544411 3556666643
No 62
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=82.82 E-value=0.11 Score=50.03 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=48.1
Q ss_pred CCcccEEEccCCCCC---chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056 288 GRSLCSLKLRHCHLD---RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H 362 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~---d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~ 362 (414)
...++.|.||+||+. +.-|.+ . +|+.|.+++|+|++ +.-.++. ++.|++||++ .
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l--------~-nlevln~~nnqie~---------lp~~iss---l~klr~lnvgmnr 90 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAEL--------K-NLEVLNLSNNQIEE---------LPTSISS---LPKLRILNVGMNR 90 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHh--------h-hhhhhhcccchhhh---------cChhhhh---chhhhheecchhh
Confidence 356788999999983 222222 2 88999999999998 3334433 3459999995 1
Q ss_pred H---HhhccccCCCceeEEEeecccCC
Q 015056 363 I---AASLGKFFGTSVQVLNIGAIGLG 386 (414)
Q Consensus 363 l---~~agvk~L~c~Lq~L~L~~c~lg 386 (414)
+ -...+. -.-|+.|||..|.+.
T Consensus 91 l~~lprgfgs--~p~levldltynnl~ 115 (264)
T KOG0617|consen 91 LNILPRGFGS--FPALEVLDLTYNNLN 115 (264)
T ss_pred hhcCccccCC--Cchhhhhhccccccc
Confidence 1 111111 345677777777654
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.57 E-value=0.59 Score=49.62 Aligned_cols=58 Identities=29% Similarity=0.241 Sum_probs=39.5
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeeh
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 360 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnL 360 (414)
...++..|.|.+|++.- +-.+....-.+|.+|+|.+|+||. .+- .++....+ |+.|||
T Consensus 296 ~~a~l~eL~L~~N~l~~-----v~~~~f~~ls~L~tL~L~~N~it~----~~~----~aF~~~~~---l~~l~l 353 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEF-----VSSGMFQGLSGLKTLSLYDNQITT----VAP----GAFQTLFS---LSTLNL 353 (498)
T ss_pred chhhhhhhhcCcchHHH-----HHHHhhhccccceeeeecCCeeEE----Eec----ccccccce---eeeeeh
Confidence 34567888999999832 233334444499999999999996 222 25544454 888998
No 64
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=80.90 E-value=3 Score=43.32 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=88.5
Q ss_pred HhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEec
Q 015056 246 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 325 (414)
Q Consensus 246 C~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdL 325 (414)
++.|..-+.-+-+|+..-++.-. +-|.+--.+++.+|..|...+.+.|.+..-+|--|..+...|.-.. +|++|.+
T Consensus 187 e~~leri~~nd~~l~evnlnn~~---~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~-sl~slnv 262 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIR---RIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENK-SLTSLNV 262 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccc---cCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcc-hhhheec
Confidence 44444433333455555555221 2235666789999999999999999999999999999999999999 9999999
Q ss_pred cCCCCCCcccccCCCCh--hhhhhcCcccCCcceeehHHHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCC
Q 015056 326 SGNSIGGWLSKYDRSGP--LFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKL 403 (414)
Q Consensus 326 s~n~Lt~wl~~~~c~~l--s~aL~~nks~~~L~~LnLs~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L 403 (414)
+.|-||+ -+.+ -++|..|++ |+.|--- -..| .+|..-.+.+|.+|..|.+|
T Consensus 263 esnFItg------~gi~a~~~al~~n~t---l~el~~d-----------nqrq-------~lg~~vemeia~~leen~sl 315 (353)
T KOG3735|consen 263 ESNFITG------LGIMALLRALQSNKS---LTELKND-----------NQRQ-------VLGNAVEMEIALELEENASL 315 (353)
T ss_pred ccccccc------HHHHHHHHHHhccch---hhHhhhh-----------hHHh-------hcccHHHHHHHHHHHhcccc
Confidence 9999999 4433 247777776 7766551 0001 23445556666666666655
Q ss_pred c
Q 015056 404 V 404 (414)
Q Consensus 404 ~ 404 (414)
-
T Consensus 316 l 316 (353)
T KOG3735|consen 316 L 316 (353)
T ss_pred c
Confidence 3
No 65
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.62 E-value=1.1 Score=48.43 Aligned_cols=71 Identities=11% Similarity=-0.085 Sum_probs=58.9
Q ss_pred CcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcC
Q 015056 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (414)
Q Consensus 274 ~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~n 349 (414)
+++...++...+.+++++.+|++++|+++|-|++.|-.++.-+. .++.--.+.|.++. ..=.....++-.|
T Consensus 425 lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~-rlr~ipds~n~p~~----~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 425 LKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNC-RLRPIPDSLNLPED----PGLGPRNEERPLN 495 (553)
T ss_pred ccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCC-ccCCCCCCCCCccc----cccchhhhhcccc
Confidence 46788899999999999999999999999999999999988776 99999999999997 3333333445444
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=75.84 E-value=1.9 Score=25.64 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.2
Q ss_pred CccEEeccCCCCCC
Q 015056 319 SLSILDLSGNSIGG 332 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~ 332 (414)
+|++|+|++|+|++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 57778888887764
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=75.41 E-value=0.52 Score=51.97 Aligned_cols=103 Identities=22% Similarity=0.215 Sum_probs=57.5
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCC--CCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS--SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS- 361 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~--C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs- 361 (414)
+..-..|+.|+|+.|.+. .|-.+- |-|+.|.+++|.++. +..-++.... |++||.+
T Consensus 117 i~~L~~lt~l~ls~NqlS---------~lp~~lC~lpLkvli~sNNkl~~---------lp~~ig~~~t---l~~ld~s~ 175 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLS---------HLPDGLCDLPLKVLIVSNNKLTS---------LPEEIGLLPT---LAHLDVSK 175 (722)
T ss_pred hhhhhHHHHhhhccchhh---------cCChhhhcCcceeEEEecCcccc---------CCcccccchh---HHHhhhhh
Confidence 344567888888888873 222222 378999999999996 2223332232 6677764
Q ss_pred -HHHhhccccC-CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 362 -HIAASLGKFF-GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 362 -~l~~agvk~L-~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.++.....+- -.+|+.|+++.|.+-+.=.+- . .-.|..||+|.|+|+
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~lp~El-----~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-----C-SLPLIRLDFSCNKIS 224 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-----h-CCceeeeecccCcee
Confidence 2222111110 355666677666665432221 1 445677777777663
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.04 E-value=0.88 Score=45.43 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=17.4
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+|++|+|++|++.| +.- ...|.... +|.+||+.+|.-+.
T Consensus 91 P~l~~l~ls~Nki~~--lst-l~pl~~l~-nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKD--LST-LRPLKELE-NLKSLDLFNCSVTN 130 (260)
T ss_pred CceeEEeecCCcccc--ccc-cchhhhhc-chhhhhcccCCccc
Confidence 555555555555544 111 12223333 34455555554443
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.33 E-value=1.9 Score=27.78 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=20.2
Q ss_pred CceeEEEeeccc-CCchhHHHHHH
Q 015056 373 TSVQVLNIGAIG-LGSSGFRVLQD 395 (414)
Q Consensus 373 c~Lq~L~L~~c~-lg~~gcqaLa~ 395 (414)
.+|+.|+|++|. +||.|-++|++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHhc
Confidence 468999999995 99999999885
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.21 E-value=1.2 Score=43.51 Aligned_cols=64 Identities=34% Similarity=0.305 Sum_probs=46.6
Q ss_pred HHHHhcCCcccEEEccCCC-CCchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcccCCcceee
Q 015056 282 VSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (414)
Q Consensus 282 as~Lssn~sL~~L~Ls~N~-L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~~Ln 359 (414)
..-|...++++.|.+.+.+ ++|++...|.. +.-+||+|+||.| +||+ .+ + ..|.+.|| |+.|.
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~------~G-L-~~L~~lkn---Lr~L~ 182 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITD------GG-L-ACLLKLKN---LRRLH 182 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeech------hH-H-HHHHHhhh---hHHHH
Confidence 3456777899999998875 67777776554 5558999999977 7888 33 3 45655565 77776
Q ss_pred h
Q 015056 360 L 360 (414)
Q Consensus 360 L 360 (414)
|
T Consensus 183 l 183 (221)
T KOG3864|consen 183 L 183 (221)
T ss_pred h
Confidence 6
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=74.11 E-value=4.5 Score=43.37 Aligned_cols=137 Identities=22% Similarity=0.206 Sum_probs=91.5
Q ss_pred cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+||.|..+.+.. .-+..--+|.+|..+|+.|.+.+++ +++.++- +|..-. ..++.+-++.|.. .
T Consensus 295 ~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft----~l~rn~---~~Le~l~~e~~~~-~----- 359 (483)
T KOG4341|consen 295 ALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT----MLGRNC---PHLERLDLEECGL-I----- 359 (483)
T ss_pred HhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhh----hhhcCC---hhhhhhcccccce-e-----
Confidence 556665554433 3345666899998899999999997 4443333 333333 4466666777765 3
Q ss_pred cHHHHHHHHhcCCcccEEEccCCC-CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~-L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
....|++.=..+..|++|.|++-. +.|+|.+.+-..=-+.. .++.|.|++|..+. -. ....|..+++ |
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~n~p~i~------d~-~Le~l~~c~~---L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE-GLEVLELDNCPLIT------DA-TLEHLSICRN---L 428 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc-ccceeeecCCCCch------HH-HHHHHhhCcc---c
Confidence 122577777788999999999764 46788887666555555 88899999998776 22 2256666665 6
Q ss_pred ceeeh
Q 015056 356 RLLNL 360 (414)
Q Consensus 356 ~~LnL 360 (414)
+..+|
T Consensus 429 eri~l 433 (483)
T KOG4341|consen 429 ERIEL 433 (483)
T ss_pred ceeee
Confidence 66666
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=70.00 E-value=1.2 Score=41.55 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=8.1
Q ss_pred CCceeEEEeecccCC
Q 015056 372 GTSVQVLNIGAIGLG 386 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg 386 (414)
-+.|++||++.|-|-
T Consensus 99 m~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN 113 (177)
T ss_pred hHHhhhcccccCccc
Confidence 455555555555553
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.52 E-value=3.1 Score=25.92 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.8
Q ss_pred CccEEeccCCCCCC
Q 015056 319 SLSILDLSGNSIGG 332 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~ 332 (414)
+|+.|||++|+|+.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 47899999999885
No 74
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=63.52 E-value=17 Score=26.04 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
.+|||..||-.+|-+++.. +.+. -..||+.+.+.+.
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~--~~i~-~LpLP~~Lk~yL~ 37 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR--DLID-QLPLPRRLKDYLK 37 (39)
T ss_pred CCCCHHHHHHHHHHHHccc--cccc-cCCCCHHHHHHHH
Confidence 5799999999999999842 1211 2356677766654
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=61.02 E-value=22 Score=38.04 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=31.5
Q ss_pred cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC
Q 015056 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 328 (414)
Q Consensus 275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n 328 (414)
++.-....+-+..++.+++|+++++.|. .|-+.+++|++|.+++|
T Consensus 38 ~e~r~~a~~r~~~~~~l~~L~Is~c~L~---------sLP~LP~sLtsL~Lsnc 82 (426)
T PRK15386 38 AEIRSEITPQIEEARASGRLYIKDCDIE---------SLPVLPNELTEITIENC 82 (426)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCCCCc---------ccCCCCCCCcEEEccCC
Confidence 4444455566777888999999998653 22245668999998874
No 76
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.28 E-value=3.2 Score=42.96 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh----------------ccCCccccCCCCCchHHHHHhhhhhhh-cchhcccccccccccc
Q 015056 108 QQRYWEAHVQGCLDEAAELV----------------VLPSFRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQ 170 (414)
Q Consensus 108 kq~y~E~hlq~~l~eaae~a----------------~~p~F~g~i~~~~~~~~i~~~i~~~~~-~~~~~~~~s~l~~~~~ 170 (414)
-||||+|-.+..+||+++-. +.|.| |-- ..+.|.+-++--.. ++--+-.||-|++.--
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYF---i~f--~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~i 269 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYF---IHF--FNEQITKNLKNLEKLTTVVMMYSSLLKNKYI 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH---HHH--HHHHHHHhhhhHHHHHHHHHHHHHHhcCCce
Confidence 48999999999999998754 45666 322 23344443332222 3333444666777666
Q ss_pred ccccchhhhcccccccchhhhch
Q 015056 171 QFGHYARCLRLQNALCVEETCQL 193 (414)
Q Consensus 171 ~~~~yvr~l~l~~~l~~~~~~~l 193 (414)
...+|+ +|++|.+=|+-+
T Consensus 270 FvdPY~-----hqlmPSilTcli 287 (450)
T COG5095 270 FVDPYL-----HQLMPSILTCLI 287 (450)
T ss_pred eecHHH-----HHHHHHHHHHHH
Confidence 668898 667777666633
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=58.98 E-value=4.2 Score=38.17 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.8
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.-.+....|+.+..|+..+|++|.+.+---+. .--..++++|.|++|.|.+
T Consensus 41 ~i~davy~l~~~~el~~i~ls~N~fk~fp~kf-----t~kf~t~t~lNl~~neisd 91 (177)
T KOG4579|consen 41 YIADAVYMLSKGYELTKISLSDNGFKKFPKKF-----TIKFPTATTLNLANNEISD 91 (177)
T ss_pred HHHHHHHHHhCCceEEEEecccchhhhCCHHH-----hhccchhhhhhcchhhhhh
Confidence 34577888899999999999999886544333 2222367788888888887
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.64 E-value=9.4 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=11.8
Q ss_pred CCCcEEecCCCCCC
Q 015056 401 LKLVNINIRFKPIS 414 (414)
Q Consensus 401 ~~L~~LdLs~N~i~ 414 (414)
++|++|++|+|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57899999999884
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=52.04 E-value=11 Score=23.79 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=10.4
Q ss_pred CCCcEEecCCCCCC
Q 015056 401 LKLVNINIRFKPIS 414 (414)
Q Consensus 401 ~~L~~LdLs~N~i~ 414 (414)
++|++|++++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 35788888888763
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=52.04 E-value=11 Score=23.79 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=10.4
Q ss_pred CCCcEEecCCCCCC
Q 015056 401 LKLVNINIRFKPIS 414 (414)
Q Consensus 401 ~~L~~LdLs~N~i~ 414 (414)
++|++|++++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 35788888888763
No 81
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=46.40 E-value=35 Score=25.48 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 015056 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (414)
Q Consensus 2 ~~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v 40 (414)
.++|||.+||-.+|.++...+ .+.. ..||.-+.+.+
T Consensus 1 ~k~~SLQ~LCR~~I~~~t~~~--~I~~-LPLP~~Lk~yL 36 (43)
T cd03742 1 NKVLSLQDLCCRAIVSCTPVY--LIDK-LPLPVSIKSHL 36 (43)
T ss_pred CccccHHHHHHHHHHHhCCcc--hhhh-CCCCHHHHHHH
Confidence 378999999999999997421 1111 24556666553
No 82
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=45.55 E-value=47 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 2 ~~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
+.||+|-.||-..|.++... +.+-. ..||.-+++.+-
T Consensus 1 ~~~~sLQhLCR~tI~~~~~~--~~i~~-lpLP~~LKdyL~ 37 (43)
T cd03735 1 VRVRPLQELCRKSIVATFGR--ENLAR-IPLNPVLKDYLK 37 (43)
T ss_pred CCccCHHHHHHHHHHHhcCc--ccccc-CcCCHHHHHHHH
Confidence 46899999999999999632 11111 256666666553
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=43.81 E-value=13 Score=39.82 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=22.8
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
++.-+.|+.|+|++|++++= .+--++ .-..+++|-|-.|+|..
T Consensus 270 f~~L~~L~~lnlsnN~i~~i-~~~aFe----~~a~l~eL~L~~N~l~~ 312 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRI-EDGAFE----GAAELQELYLTRNKLEF 312 (498)
T ss_pred HhhcccceEeccCCCccchh-hhhhhc----chhhhhhhhcCcchHHH
Confidence 55566666677777766331 111111 11256666666666665
No 84
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.13 E-value=10 Score=38.09 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=18.9
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
.+|+.|+|++|++.+. +-| .-|+.-.+|.+||+++|.
T Consensus 91 P~l~~l~ls~Nki~~l--stl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDL--STL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCccccc--ccc-chhhhhcchhhhhcccCC
Confidence 5566666666666651 001 112333446666666654
No 85
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=14 Score=36.40 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=50.8
Q ss_pred hhhccCCccccCCCCCchHHHHHhhhhhhhcchhccccccccccccccccchhhhcccccccchhhhchhccccc
Q 015056 125 ELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKL 199 (414)
Q Consensus 125 e~a~~p~F~g~i~~~~~~~~i~~~i~~~~~~~~~~~~~s~l~~~~~~~~~yvr~l~l~~~l~~~~~~~l~~~ckL 199 (414)
-.+-.|+|||++---...+++.+|+..+++-+|++-.|-. -.--|-++.=+.+++....|+++-.
T Consensus 114 ~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT----------~fWmLv~ksG~t~~qaq~~Lkgt~s 178 (260)
T KOG2721|consen 114 KLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNT----------CFWMLVKKSGKTPSQAQEILKGTFS 178 (260)
T ss_pred ccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhH----------HHHHHHHHhCCChHHHHHHHHhhhh
Confidence 3567899999999988999999999999999999988876 1233555566777777777776533
No 86
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.09 E-value=42 Score=24.81 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHH
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDI 39 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~ 39 (414)
++|||..||-.+|-++.... -.+++||-.+++.
T Consensus 2 ~v~SLQHLCR~~In~~~~~~----~~~~~LP~~Lk~y 34 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSY----EKRTQLPLPIKEF 34 (42)
T ss_pred CcccHHHHHHHHHHHhcCcc----cchhhccHHHHHH
Confidence 57999999999999886411 1255677665555
No 87
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=38.78 E-value=34 Score=24.37 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcc--cCCChhhHHHH
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYV--YELPADLFDIL 40 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~--~~Lp~~~~~~v 40 (414)
||||.++|=.+|.+.+... ..+.+ ..||+.+.+.+
T Consensus 1 p~sLq~LCR~~Ir~~l~~~--~~~~i~~LpLP~~L~~yL 37 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGKK--GLERIDKLPLPPRLKDYL 37 (40)
T ss_dssp ---HHHHHHHHHHHHSSCC--HGGGGGGSSS-HHHHHHH
T ss_pred CccHHHHHHHHHHHHhChh--hccccccCCCCHHHHHHH
Confidence 5899999999999998522 11233 44666666554
No 88
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=36.29 E-value=77 Score=22.64 Aligned_cols=37 Identities=41% Similarity=0.409 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHhccC-CCCCCcccCCChhhHHHHH
Q 015056 4 APSLISLAALAVKRELLLG-DDVIPYVYELPADLFDILL 41 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~-~~~~P~~~~Lp~~~~~~v~ 41 (414)
+|||.++|--+|-+++-.. .+.++. ..||..+.+.+.
T Consensus 2 p~sLq~LCR~~Ir~~lg~~~~~~i~~-LpLP~~Lk~yL~ 39 (41)
T cd03587 2 PRSLQHLCRLAIRRCLGKRRLDLIDK-LPLPPRLKDYLL 39 (41)
T ss_pred CcCHHHHHHHHHHHHHCccccccccc-CCCCHHHHHHHc
Confidence 6999999999999998421 112222 356677766654
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.22 E-value=5.9 Score=44.05 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=13.4
Q ss_pred hCCCCCcEEEcccCCCCh
Q 015056 222 QNSETLASLEFLHCKLSP 239 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~ 239 (414)
.|++.||+|+|+-|+++.
T Consensus 118 ~~L~~lt~l~ls~NqlS~ 135 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSH 135 (722)
T ss_pred hhhhHHHHhhhccchhhc
Confidence 445678888888887754
No 90
>PLN00158 histone H2B; Provisional
Probab=36.09 E-value=43 Score=29.99 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=23.0
Q ss_pred ccCcccccCCCchHHHHHHHhccCCC
Q 015056 72 ENGRKRGRYGNFNTVWKKLFKTRWSG 97 (414)
Q Consensus 72 ~~~~kr~r~~~~~~~Wkrl~~~RW~~ 97 (414)
.++|||.|.|.|++|=.+..|+-.|+
T Consensus 18 ~kk~~~kr~esy~~YI~kVLKQVhPd 43 (116)
T PLN00158 18 KKKGSKSKTETYKIYIYKVLKQVHPD 43 (116)
T ss_pred cccccccccccHHHHHHHHHHHhCCC
Confidence 45677888999999999999999998
No 91
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=35.57 E-value=76 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
+|||..||=.+|-+++.. +.++. ..||+.+.+.+.
T Consensus 3 v~sLQhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~YL~ 37 (40)
T cd03746 3 VASLQHLCRMAIRRVMPT--QQVKE-LPIPSKLLEFLT 37 (40)
T ss_pred CcCHHHHHHHHHHHHccc--ccccc-CCCCHHHHHHHh
Confidence 799999999999988742 12222 367777777654
No 92
>PTZ00463 histone H2B; Provisional
Probab=33.64 E-value=63 Score=29.01 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred cccCcccccCCCchHHHHHHHhccCCC
Q 015056 71 FENGRKRGRYGNFNTVWKKLFKTRWSG 97 (414)
Q Consensus 71 ~~~~~kr~r~~~~~~~Wkrl~~~RW~~ 97 (414)
..+++||.|.|.|+.|=.+..|+-.|+
T Consensus 18 ~~kk~~~kr~esy~~YI~KVLKqVhPd 44 (117)
T PTZ00463 18 GKKKRKKSRYDSYGLYIFKVLKQVHPD 44 (117)
T ss_pred ccccccccccchHHHHHHHHHHhhCCC
Confidence 345778889999999999999999997
No 93
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=31.61 E-value=1e+02 Score=22.50 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
++|||..||=.+|.+... .++. ..||..+.+.+.
T Consensus 2 ~~~sLQhLCR~~I~~~~~----~i~~-LpLP~~Lk~yL~ 35 (41)
T cd03736 2 STPSLQHLCRITINKCTR----QIQE-LPLPTRLKDYLT 35 (41)
T ss_pred CCCCHHHHHHHHHHHhcC----CCCc-CCCCHHHHHHHH
Confidence 479999999999987642 4443 467777766644
No 94
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=31.09 E-value=1.1e+02 Score=22.10 Aligned_cols=37 Identities=35% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHhccCC-CCCCcccCCChhhHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGD-DVIPYVYELPADLFDIL 40 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~-~~~P~~~~Lp~~~~~~v 40 (414)
.+|||.++|--+|-+.+-... ..++. ..||..+.+.+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~i~~-LplP~~Lk~yL 39 (42)
T cd03716 2 TPRSLQHLCRLAIRRCLGRRRLELIKK-LPLPPRLKDYL 39 (42)
T ss_pred CCCCHHHHHHHHHHHHhCccccccCcc-CCCCHHHHHHH
Confidence 469999999999999985221 11222 35667666654
No 95
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=30.36 E-value=89 Score=22.82 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHh
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~ 42 (414)
.||||..||-.+|-+... .+.++. ..||..+.+.+.+
T Consensus 2 ~v~sLqhLCR~~Ir~~~~--~~~i~~-LpLP~~Lk~yL~~ 38 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTR--IDLIQK-LPLPNKMKGYLLE 38 (41)
T ss_pred CcccHHHHHHHHHHHHcc--hhhccc-CCCCHHHHHHHHc
Confidence 469999999999999863 122222 3677777776654
No 96
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=29.78 E-value=1.2e+02 Score=21.99 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
.+|||..||--+|.+.+.. +.+ .-..||+.+.+.+.
T Consensus 6 ~~~sLqhLCR~~I~~~~~~--~~i-~~LpLP~~lk~yL~ 41 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTRT--DQI-KTLPLPPKLKDYLS 41 (43)
T ss_pred CCCCHHHHHHHHHHHHcCC--cCc-ccCCCCHHHHHHHH
Confidence 5699999999999999852 111 12356677766654
No 97
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=29.01 E-value=56 Score=38.03 Aligned_cols=82 Identities=28% Similarity=0.217 Sum_probs=52.4
Q ss_pred HHHHhcCCcccEEEccCCC----CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcce
Q 015056 282 VSFLSSGRSLCSLKLRHCH----LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (414)
Q Consensus 282 as~Lssn~sL~~L~Ls~N~----L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~ 357 (414)
..|+..-+.|..|||++|. |++.-..+ - +|+-|+|++..|.. +...|...+. |.+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L-----i----~LryL~L~~t~I~~---------LP~~l~~Lk~---L~~ 622 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL-----V----HLRYLDLSDTGISH---------LPSGLGNLKK---LIY 622 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhh-----h----hhhcccccCCCccc---------cchHHHHHHh---hhe
Confidence 4457888999999999744 32222211 1 67788999999886 5456655565 999
Q ss_pred eehHHHHh----hccccCCCceeEEEeeccc
Q 015056 358 LNLSHIAA----SLGKFFGTSVQVLNIGAIG 384 (414)
Q Consensus 358 LnLs~l~~----agvk~L~c~Lq~L~L~~c~ 384 (414)
|||..... .++-.-=++||.|.+..-+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 99941110 2222113678888887766
No 98
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=28.89 E-value=1.3e+02 Score=22.22 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~ 41 (414)
++|||..||=.+|.+... .++ -..||+.+++.+.
T Consensus 2 ~~~sLQHLCR~~I~~~~~----~i~-~LpLP~~L~~yL~ 35 (41)
T cd03734 2 SARSLQHLCRLVINRLVT----DVD-CLPLPRRMADYLR 35 (41)
T ss_pred CCccHHHHHHHHHHHhcC----Ccc-cCCCCHHHHHHHH
Confidence 579999999999998863 222 2356666666553
No 99
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=26.95 E-value=52 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.6
Q ss_pred ccCCChhhHHHHHhcCCchhhh
Q 015056 29 VYELPADLFDILLTCLPPLALQ 50 (414)
Q Consensus 29 ~~~Lp~~~~~~v~~~Lpp~aL~ 50 (414)
+..||+|.+.+|.+.||+.-+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~ 22 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLL 22 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHH
Confidence 3579999999999999988444
No 100
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=26.63 E-value=72 Score=31.64 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=57.7
Q ss_pred cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeeh-----HHHH
Q 015056 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL-----SHIA 364 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnL-----s~l~ 364 (414)
....++|++|.+.. ...|-|++ .|.+|.|.+|.|+. .+-. +...+ .+|..|-| +.++
T Consensus 43 ~~d~iDLtdNdl~~------l~~lp~l~-rL~tLll~nNrIt~----I~p~-L~~~~------p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------LDNLPHLP-RLHTLLLNNNRITR----IDPD-LDTFL------PNLKTLILTNNSIQELG 104 (233)
T ss_pred ccceecccccchhh------cccCCCcc-ccceEEecCCccee----eccc-hhhhc------cccceEEecCcchhhhh
Confidence 45578899998843 34567777 99999999999997 3222 32232 22444544 2333
Q ss_pred h--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecC
Q 015056 365 A--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIR 409 (414)
Q Consensus 365 ~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs 409 (414)
| .+|. ..+|+.|-+=+|.++..-- .=.-+|-+-++|+.||..
T Consensus 105 dl~pLa~--~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 105 DLDPLAS--CPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hcchhcc--CCccceeeecCCchhcccC-ceeEEEEecCcceEeehh
Confidence 2 2333 5568888888777765321 111233444555555543
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=24.83 E-value=43 Score=22.54 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=9.4
Q ss_pred CCcEEecCCCCCC
Q 015056 402 KLVNINIRFKPIS 414 (414)
Q Consensus 402 ~L~~LdLs~N~i~ 414 (414)
.|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 5777888888763
No 102
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.51 E-value=1.6e+02 Score=21.46 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhccCC-CCCCcccCCChhhHHHH
Q 015056 3 KAPSLISLAALAVKRELLLGD-DVIPYVYELPADLFDIL 40 (414)
Q Consensus 3 ~~P~L~~lC~~~i~~~~~~~~-~~~P~~~~Lp~~~~~~v 40 (414)
+++||.++|--+|-+.+-... ..++.+ .||.-+.+.+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~I~~L-pLP~~Lk~yL 39 (42)
T cd03718 2 EPLPLMDLCRRRVRVALGRDRLEEIEQL-PLPPSLKNYL 39 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcccccccccC-CCCHHHHHHH
Confidence 468999999999999995221 122222 3556665554
No 103
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=23.69 E-value=41 Score=23.72 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=17.2
Q ss_pred ccCCChhhHHHHHhcCCchhhh
Q 015056 29 VYELPADLFDILLTCLPPLALQ 50 (414)
Q Consensus 29 ~~~Lp~~~~~~v~~~Lpp~aL~ 50 (414)
+.+||.+.+..|+.+||+..+-
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~ 24 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLL 24 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHH
Confidence 5689999999999999998544
No 104
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.76 E-value=1.5e+02 Score=21.64 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v 40 (414)
+|||..||=.+|-++...+ ...-..||..+.+.+
T Consensus 3 v~SLQHLCR~~I~~~~~~~---~~~~LPLP~~Lk~yL 36 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTY---QVLALPIPKKMKEFL 36 (39)
T ss_pred cccHHHHHHHHHHHhcccc---ccccCCCcHHHHHHH
Confidence 5999999999999987421 112235667776653
No 105
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.29 E-value=27 Score=36.24 Aligned_cols=99 Identities=19% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhcc
Q 015056 236 KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 315 (414)
Q Consensus 236 ~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~ 315 (414)
++++.|++-|-=..+.|. ++-|+|.-=.+-+ .+-|.-|+.|+.|.|..|.+.|-.- +.-|..
T Consensus 25 Ncwg~~L~DIsic~kMp~-----lEVLsLSvNkIss----------L~pl~rCtrLkElYLRkN~I~sldE---L~YLkn 86 (388)
T KOG2123|consen 25 NCWGCGLDDISICEKMPL-----LEVLSLSVNKISS----------LAPLQRCTRLKELYLRKNCIESLDE---LEYLKN 86 (388)
T ss_pred cccCCCccHHHHHHhccc-----ceeEEeecccccc----------chhHHHHHHHHHHHHHhcccccHHH---HHHHhc
Q ss_pred CCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceee
Q 015056 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (414)
Q Consensus 316 ~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~Ln 359 (414)
.+ +|++|||.+|-=.+-++ -.+.+.+|...-| |+.||
T Consensus 87 lp-sLr~LWL~ENPCc~~ag---~nYR~~VLR~LPn---LkKLD 123 (388)
T KOG2123|consen 87 LP-SLRTLWLDENPCCGEAG---QNYRRKVLRVLPN---LKKLD 123 (388)
T ss_pred Cc-hhhhHhhccCCcccccc---hhHHHHHHHHccc---chhcc
No 106
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=22.05 E-value=40 Score=40.73 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=13.5
Q ss_pred CCcccEEEccCCCCCch
Q 015056 288 GRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~ 304 (414)
-++.+..+|..|++.-|
T Consensus 1410 kkkAktIDLCnNP~TKE 1426 (1470)
T KOG1879|consen 1410 KKKAKTIDLCNNPLTKE 1426 (1470)
T ss_pred hhhchhhhhhcCccccc
Confidence 46677888999998777
No 107
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=21.50 E-value=1.7e+02 Score=21.08 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v 40 (414)
+|||..||=.+|-+++.. +.++. ..||+.+.+.+
T Consensus 3 v~sLqhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~YL 36 (39)
T cd03733 3 VSSLQHLCRMALRRVMTT--QQVLA-LPIPKKMKEFL 36 (39)
T ss_pred CCCHHHHHHHHHHHHccc--ccccc-CCCCHHHHHHH
Confidence 599999999999998852 12222 35666666554
Done!