Query 015056
Match_columns 414
No_of_seqs 97 out of 107
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-20 4.8E-25 184.4 14.8 204 196-414 198-411 (461)
2 3un9_A NLR family member X1; l 99.8 1.1E-20 3.8E-25 187.2 13.8 188 205-414 55-252 (372)
3 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-20 6E-25 183.7 13.5 201 198-413 86-296 (461)
4 3goz_A Leucine-rich repeat-con 99.8 9.3E-20 3.2E-24 176.5 16.5 202 198-412 52-264 (362)
5 3goz_A Leucine-rich repeat-con 99.8 1.9E-20 6.3E-25 181.4 11.4 204 197-413 80-296 (362)
6 2ca6_A RAN GTPase-activating p 99.8 2E-18 7E-23 167.5 15.4 205 197-414 94-316 (386)
7 1pgv_A TMD-1, tropomodulin TMD 99.8 6.3E-19 2.1E-23 163.9 10.6 131 273-413 25-169 (197)
8 1io0_A Tropomodulin; LRR prote 99.8 6.9E-19 2.3E-23 157.7 10.2 132 273-414 20-164 (185)
9 2ca6_A RAN GTPase-activating p 99.8 4.3E-18 1.5E-22 165.2 16.2 200 196-414 59-287 (386)
10 3un9_A NLR family member X1; l 99.8 9.8E-19 3.3E-23 173.3 11.6 195 198-413 73-282 (372)
11 1io0_A Tropomodulin; LRR prote 99.7 2.9E-17 9.8E-22 147.1 9.8 152 214-404 26-180 (185)
12 1pgv_A TMD-1, tropomodulin TMD 99.7 5.7E-17 1.9E-21 150.7 8.8 151 214-403 31-185 (197)
13 2ast_B S-phase kinase-associat 99.4 2E-12 6.8E-17 121.7 15.6 182 190-414 110-306 (336)
14 2ast_B S-phase kinase-associat 99.3 1.9E-11 6.5E-16 115.0 13.2 182 194-411 90-282 (336)
15 4glp_A Monocyte differentiatio 99.1 6.5E-11 2.2E-15 111.9 3.9 43 194-238 61-104 (310)
16 3ogk_B Coronatine-insensitive 99.0 1.6E-09 5.4E-14 109.5 13.2 197 190-414 285-526 (592)
17 2ra8_A Uncharacterized protein 99.0 2.3E-10 8E-15 113.7 6.4 42 373-414 279-320 (362)
18 4glp_A Monocyte differentiatio 99.0 5.1E-10 1.7E-14 105.8 7.3 166 221-414 61-237 (310)
19 2p1m_B Transport inhibitor res 99.0 1.4E-09 4.8E-14 109.6 11.0 111 197-326 289-405 (594)
20 3ogk_B Coronatine-insensitive 99.0 2.7E-09 9.3E-14 107.7 12.7 189 198-414 271-501 (592)
21 2ra8_A Uncharacterized protein 99.0 2.9E-10 9.9E-15 113.0 5.1 166 216-412 164-341 (362)
22 4fmz_A Internalin; leucine ric 99.0 3.5E-09 1.2E-13 100.3 12.0 84 222-332 174-257 (347)
23 2p1m_B Transport inhibitor res 98.9 4.7E-09 1.6E-13 105.7 12.6 17 29-45 6-22 (594)
24 1h6u_A Internalin H; cell adhe 98.9 1.9E-09 6.3E-14 102.6 7.7 162 197-413 63-229 (308)
25 3v47_A TOLL-like receptor 5B a 98.9 1.8E-09 6E-14 105.8 7.7 27 287-313 210-236 (455)
26 1wwl_A Monocyte differentiatio 98.9 4.8E-09 1.6E-13 99.4 10.2 156 225-414 149-309 (312)
27 4fmz_A Internalin; leucine ric 98.9 5.1E-09 1.8E-13 99.1 9.7 163 197-414 177-346 (347)
28 4ezg_A Putative uncharacterize 98.9 1.7E-09 5.8E-14 95.9 5.7 107 284-414 83-194 (197)
29 1h6t_A Internalin B; cell adhe 98.8 3.9E-09 1.3E-13 99.8 7.0 144 222-413 65-212 (291)
30 1h6u_A Internalin H; cell adhe 98.8 1.6E-08 5.4E-13 96.2 10.8 145 222-414 60-208 (308)
31 1h6t_A Internalin B; cell adhe 98.8 9E-09 3.1E-13 97.3 8.8 141 225-414 46-191 (291)
32 2z7x_B TOLL-like receptor 1, v 98.8 3.8E-08 1.3E-12 98.4 12.5 44 286-332 345-388 (520)
33 2z7x_B TOLL-like receptor 1, v 98.8 1.2E-08 3.9E-13 102.1 8.2 42 286-332 321-362 (520)
34 3v47_A TOLL-like receptor 5B a 98.8 9.5E-09 3.2E-13 100.6 7.2 160 225-414 212-408 (455)
35 1wwl_A Monocyte differentiatio 98.7 5.3E-08 1.8E-12 92.2 11.0 164 223-414 93-266 (312)
36 1m9s_A Internalin B; cell inva 98.7 1.6E-08 5.3E-13 106.7 7.3 145 221-413 61-209 (605)
37 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 4.7E-08 1.6E-12 99.5 10.6 45 219-269 244-288 (562)
38 1ozn_A Reticulon 4 receptor; N 98.7 1.2E-08 4.1E-13 94.6 5.4 173 198-413 57-237 (285)
39 1o6v_A Internalin A; bacterial 98.7 4.8E-08 1.6E-12 97.3 9.9 101 285-413 261-365 (466)
40 2z62_A TOLL-like receptor 4, v 98.7 7.6E-09 2.6E-13 95.5 3.7 179 197-414 52-237 (276)
41 1ozn_A Reticulon 4 receptor; N 98.7 1.4E-08 4.7E-13 94.2 5.2 155 222-414 53-214 (285)
42 1xeu_A Internalin C; cellular 98.7 1.4E-08 5E-13 94.7 5.2 140 225-413 41-184 (263)
43 3oja_A Leucine-rich immune mol 98.7 1.1E-08 3.7E-13 104.0 4.6 35 198-239 59-94 (487)
44 3m19_A Variable lymphocyte rec 98.7 2.1E-08 7.1E-13 91.9 5.8 17 223-239 57-73 (251)
45 3o53_A Protein LRIM1, AGAP0063 98.7 2.5E-08 8.5E-13 94.7 6.5 101 289-414 99-204 (317)
46 2z81_A CD282 antigen, TOLL-lik 98.7 3.2E-08 1.1E-12 99.2 7.6 165 223-413 332-509 (549)
47 3rfs_A Internalin B, repeat mo 98.7 2.9E-08 1E-12 92.1 6.8 154 222-413 60-217 (272)
48 2z66_A Variable lymphocyte rec 98.6 1.1E-08 3.6E-13 95.7 3.3 154 224-414 77-236 (306)
49 2z80_A TOLL-like receptor 2, v 98.6 5.7E-08 1.9E-12 92.9 8.0 43 372-414 248-290 (353)
50 1o6v_A Internalin A; bacterial 98.6 1.3E-07 4.3E-12 94.3 10.6 37 372-414 308-344 (466)
51 1xku_A Decorin; proteoglycan, 98.6 1.1E-07 3.8E-12 89.9 9.5 160 223-414 98-276 (330)
52 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 9.7E-08 3.3E-12 97.2 9.6 44 286-332 374-417 (562)
53 1m9s_A Internalin B; cell inva 98.6 1.1E-07 3.7E-12 100.3 9.7 141 225-414 43-188 (605)
54 1xku_A Decorin; proteoglycan, 98.6 5.8E-08 2E-12 91.8 6.4 176 198-413 122-305 (330)
55 3oja_A Leucine-rich immune mol 98.6 2.9E-08 1E-12 100.8 4.4 162 198-414 35-204 (487)
56 1p9a_G Platelet glycoprotein I 98.6 2.6E-08 8.8E-13 94.3 3.6 152 222-413 52-207 (290)
57 2o6q_A Variable lymphocyte rec 98.5 8.1E-08 2.8E-12 88.9 6.4 156 222-413 58-217 (270)
58 4fcg_A Uncharacterized protein 98.5 1.6E-08 5.4E-13 97.2 1.2 102 288-413 182-289 (328)
59 3o6n_A APL1; leucine-rich repe 98.5 6E-08 2.1E-12 93.8 5.2 103 285-413 244-351 (390)
60 2o6q_A Variable lymphocyte rec 98.5 1.4E-07 4.7E-12 87.3 7.4 152 225-414 37-194 (270)
61 2z62_A TOLL-like receptor 4, v 98.5 8.6E-08 3E-12 88.4 5.7 155 222-414 49-213 (276)
62 3o53_A Protein LRIM1, AGAP0063 98.5 1.3E-08 4.4E-13 96.6 0.0 104 286-413 141-249 (317)
63 4ezg_A Putative uncharacterize 98.5 2.8E-07 9.5E-12 81.6 8.2 104 285-414 62-172 (197)
64 4g8a_A TOLL-like receptor 4; l 98.5 1.9E-07 6.5E-12 93.8 8.0 156 225-414 52-214 (635)
65 3rfs_A Internalin B, repeat mo 98.5 2E-07 6.8E-12 86.5 7.5 150 225-414 41-194 (272)
66 2ft3_A Biglycan; proteoglycan, 98.5 7.3E-08 2.5E-12 91.4 4.6 156 222-413 144-306 (332)
67 2z81_A CD282 antigen, TOLL-lik 98.5 5.3E-07 1.8E-11 90.3 10.9 14 319-332 388-401 (549)
68 1p9a_G Platelet glycoprotein I 98.5 3.9E-08 1.3E-12 93.1 2.5 151 225-414 31-185 (290)
69 3o6n_A APL1; leucine-rich repe 98.5 1E-07 3.5E-12 92.2 5.4 121 258-414 206-331 (390)
70 2z66_A Variable lymphocyte rec 98.5 4.8E-08 1.7E-12 91.2 3.0 176 196-413 77-260 (306)
71 2ft3_A Biglycan; proteoglycan, 98.4 1.6E-07 5.4E-12 89.1 5.8 160 222-414 99-277 (332)
72 3zyj_A Leucine-rich repeat-con 98.4 6.7E-08 2.3E-12 95.5 3.2 37 373-413 255-291 (440)
73 3m19_A Variable lymphocyte rec 98.4 2.2E-07 7.6E-12 85.0 6.4 152 225-414 35-192 (251)
74 1ogq_A PGIP-2, polygalacturona 98.4 1.2E-08 4.1E-13 97.0 -2.2 174 197-414 76-257 (313)
75 2id5_A Lingo-1, leucine rich r 98.4 1.6E-07 5.4E-12 93.1 5.6 107 285-413 148-260 (477)
76 2z80_A TOLL-like receptor 2, v 98.4 9.8E-08 3.4E-12 91.3 3.8 175 198-414 53-235 (353)
77 1xeu_A Internalin C; cellular 98.4 4.4E-07 1.5E-11 84.7 7.9 118 258-414 42-163 (263)
78 2id5_A Lingo-1, leucine rich r 98.4 2E-07 6.9E-12 92.3 5.6 154 222-413 53-212 (477)
79 3zyj_A Leucine-rich repeat-con 98.4 1.5E-07 5E-12 93.1 4.6 156 222-414 85-244 (440)
80 4eco_A Uncharacterized protein 98.4 1.1E-07 3.7E-12 99.5 3.7 157 223-414 247-415 (636)
81 3zyi_A Leucine-rich repeat-con 98.4 7.7E-08 2.6E-12 95.5 2.3 155 222-414 96-255 (452)
82 1ogq_A PGIP-2, polygalacturona 98.4 6.4E-08 2.2E-12 92.0 1.5 173 197-413 101-280 (313)
83 4ecn_A Leucine-rich repeat pro 98.4 3.4E-07 1.2E-11 100.9 7.5 155 223-413 489-656 (876)
84 3oja_B Anopheles plasmodium-re 98.4 1.2E-07 4.2E-12 97.8 3.8 37 289-332 232-268 (597)
85 3vq2_A TLR4, TOLL-like recepto 98.4 3E-07 1E-11 93.5 6.4 34 375-413 183-216 (606)
86 3zyi_A Leucine-rich repeat-con 98.4 1.4E-07 4.6E-12 93.7 3.4 198 174-413 75-302 (452)
87 1ziw_A TOLL-like receptor 3; i 98.4 2.6E-07 8.8E-12 95.5 5.5 40 373-414 222-261 (680)
88 4fcg_A Uncharacterized protein 98.4 1.2E-07 4.1E-12 91.1 2.7 153 224-413 103-265 (328)
89 3e6j_A Variable lymphocyte rec 98.3 3.7E-07 1.3E-11 83.1 5.3 105 287-413 62-171 (229)
90 3j0a_A TOLL-like receptor 5; m 98.3 1.5E-07 5E-12 101.4 2.6 165 222-414 45-217 (844)
91 3t6q_A CD180 antigen; protein- 98.3 4.2E-07 1.4E-11 92.4 5.2 17 223-239 348-364 (606)
92 1ziw_A TOLL-like receptor 3; i 98.3 1.1E-06 3.7E-11 90.8 8.3 156 222-413 46-207 (680)
93 2z63_A TOLL-like receptor 4, v 98.3 4.5E-07 1.5E-11 90.9 5.3 16 223-238 50-65 (570)
94 3oja_B Anopheles plasmodium-re 98.3 3.6E-07 1.2E-11 94.3 4.8 109 198-332 76-185 (597)
95 3t6q_A CD180 antigen; protein- 98.3 2.4E-07 8.3E-12 94.1 3.2 91 222-332 373-463 (606)
96 3cvr_A Invasion plasmid antige 98.3 4.3E-07 1.5E-11 95.5 5.1 136 224-414 99-243 (571)
97 3bz5_A Internalin-J, INLJ; leu 98.3 9.4E-07 3.2E-11 89.2 7.3 35 372-413 211-245 (457)
98 2v70_A SLIT-2, SLIT homolog 2 98.3 6.5E-07 2.2E-11 81.2 5.5 106 286-413 54-165 (220)
99 3j0a_A TOLL-like receptor 5; m 98.3 5.2E-07 1.8E-11 97.1 5.3 21 290-310 205-225 (844)
100 3rgz_A Protein brassinosteroid 98.3 1.6E-07 5.6E-12 99.9 1.3 62 258-332 395-456 (768)
101 4eco_A Uncharacterized protein 98.3 4.1E-07 1.4E-11 95.1 4.3 187 197-414 249-470 (636)
102 3vq2_A TLR4, TOLL-like recepto 98.3 2.3E-07 7.8E-12 94.3 2.1 37 372-413 520-557 (606)
103 2ell_A Acidic leucine-rich nuc 98.3 5.3E-07 1.8E-11 77.3 4.0 105 288-413 48-159 (168)
104 3bz5_A Internalin-J, INLJ; leu 98.2 1.6E-06 5.4E-11 87.5 8.0 157 198-414 65-225 (457)
105 1a9n_A U2A', U2A'; complex (nu 98.2 5E-07 1.7E-11 78.6 3.5 104 289-413 42-152 (176)
106 2je0_A Acidic leucine-rich nuc 98.2 8.6E-07 3E-11 74.5 4.7 126 257-410 17-149 (149)
107 3rgz_A Protein brassinosteroid 98.2 2.9E-07 9.8E-12 98.0 2.0 37 373-413 269-306 (768)
108 2o6s_A Variable lymphocyte rec 98.2 6.1E-07 2.1E-11 79.5 3.8 37 373-413 124-160 (208)
109 2je0_A Acidic leucine-rich nuc 98.2 1.5E-06 5.3E-11 72.9 6.0 86 225-332 17-102 (149)
110 2xot_A Amphoterin-induced prot 98.2 5E-07 1.7E-11 87.5 3.0 153 226-413 40-201 (361)
111 2ell_A Acidic leucine-rich nuc 98.2 5.5E-07 1.9E-11 77.2 2.6 132 222-387 21-161 (168)
112 2z63_A TOLL-like receptor 4, v 98.2 2.8E-07 9.4E-12 92.4 0.8 109 285-414 417-531 (570)
113 1ds9_A Outer arm dynein; leuci 98.2 1.5E-07 5E-12 83.4 -1.5 162 214-413 8-184 (198)
114 3e6j_A Variable lymphocyte rec 98.2 2.9E-06 9.8E-11 77.3 6.9 103 289-414 40-148 (229)
115 2xwt_C Thyrotropin receptor; s 98.1 6.7E-07 2.3E-11 80.9 2.4 153 222-414 52-218 (239)
116 3g06_A SSPH2 (leucine-rich rep 98.1 1.7E-06 5.7E-11 91.8 5.6 37 373-414 261-297 (622)
117 4ecn_A Leucine-rich repeat pro 98.1 8.4E-07 2.9E-11 97.8 3.4 37 258-302 674-710 (876)
118 3cvr_A Invasion plasmid antige 98.1 1.9E-06 6.5E-11 90.6 5.9 138 225-414 80-220 (571)
119 2v9t_B SLIT homolog 2 protein 98.1 1.6E-06 5.3E-11 78.7 4.1 105 287-413 54-164 (220)
120 4b8c_D Glucose-repressible alc 98.1 1E-06 3.5E-11 94.4 2.5 108 282-414 217-329 (727)
121 1a9n_A U2A', U2A'; complex (nu 98.0 1.9E-06 6.6E-11 74.8 3.2 104 287-414 17-126 (176)
122 2xot_A Amphoterin-induced prot 98.0 4.1E-06 1.4E-10 81.1 5.6 130 258-414 40-176 (361)
123 3g06_A SSPH2 (leucine-rich rep 98.0 1.5E-05 5.1E-10 84.5 9.6 51 354-414 222-274 (622)
124 1jl5_A Outer protein YOPM; leu 98.0 6.4E-06 2.2E-10 83.0 5.7 77 225-332 111-187 (454)
125 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 77.1 3.2 98 288-398 60-167 (176)
126 1jl5_A Outer protein YOPM; leu 97.9 6.4E-06 2.2E-10 83.0 4.5 98 197-332 131-229 (454)
127 2o6r_A Variable lymphocyte rec 97.9 4.3E-06 1.5E-10 72.3 2.8 16 287-302 50-65 (177)
128 1w8a_A SLIT protein; signaling 97.9 4.7E-06 1.6E-10 73.8 3.1 37 373-413 102-138 (192)
129 2wfh_A SLIT homolog 2 protein 97.9 1.5E-05 5.1E-10 71.1 6.3 102 289-413 31-138 (193)
130 2v9t_B SLIT homolog 2 protein 97.9 9.4E-06 3.2E-10 73.5 5.1 104 289-414 32-141 (220)
131 3e4g_A ATP synthase subunit S, 97.9 3.9E-06 1.3E-10 76.6 2.3 78 319-411 62-149 (176)
132 2xwt_C Thyrotropin receptor; s 97.9 2.2E-06 7.5E-11 77.5 0.1 152 225-414 31-193 (239)
133 2o6s_A Variable lymphocyte rec 97.8 1.2E-05 4.2E-10 71.1 4.5 104 289-414 28-137 (208)
134 1ds9_A Outer arm dynein; leuci 97.8 1.3E-06 4.3E-11 77.4 -2.0 123 225-387 48-186 (198)
135 4g8a_A TOLL-like receptor 4; l 97.8 2.1E-05 7.2E-10 78.9 5.4 128 258-414 53-186 (635)
136 2v70_A SLIT-2, SLIT homolog 2 97.7 1.9E-05 6.5E-10 71.5 4.6 105 289-414 32-142 (220)
137 1dce_A Protein (RAB geranylger 97.6 3.1E-05 1E-09 80.9 4.8 99 290-413 442-545 (567)
138 3g39_A Variable lymphocyte rec 97.6 5E-05 1.7E-09 66.2 4.8 119 257-404 9-135 (170)
139 2wfh_A SLIT homolog 2 protein 97.4 0.00022 7.6E-09 63.4 6.7 97 292-414 13-115 (193)
140 2o6r_A Variable lymphocyte rec 97.4 8.9E-05 3E-09 64.0 3.9 127 257-414 7-137 (177)
141 2r9u_A Variable lymphocyte rec 97.4 0.00013 4.5E-09 64.0 4.9 39 289-332 33-71 (174)
142 1w8a_A SLIT protein; signaling 97.4 0.0002 7E-09 63.2 5.7 99 292-414 11-115 (192)
143 1dce_A Protein (RAB geranylger 97.3 7.2E-05 2.5E-09 78.1 2.9 118 259-408 443-567 (567)
144 4b8c_D Glucose-repressible alc 97.3 0.00011 3.6E-09 78.8 3.4 87 308-414 215-306 (727)
145 3g39_A Variable lymphocyte rec 97.1 0.00046 1.6E-08 60.0 5.0 98 291-413 11-114 (170)
146 4ay9_X Follicle-stimulating ho 96.6 0.0003 1E-08 67.6 -0.4 110 284-414 99-215 (350)
147 2ifg_A High affinity nerve gro 96.6 0.0015 5E-08 62.0 4.4 98 285-400 27-131 (347)
148 3sb4_A Hypothetical leucine ri 96.5 0.0025 8.7E-08 60.4 5.7 77 319-413 227-309 (329)
149 3rw6_A Nuclear RNA export fact 96.4 0.0055 1.9E-07 58.8 6.8 78 212-332 157-234 (267)
150 2r9u_A Variable lymphocyte rec 96.2 0.0047 1.6E-07 54.0 5.2 37 373-413 81-117 (174)
151 2ifg_A High affinity nerve gro 96.2 0.004 1.4E-07 59.0 4.6 96 293-413 12-115 (347)
152 3rw6_A Nuclear RNA export fact 95.6 0.013 4.4E-07 56.2 5.5 86 287-407 168-257 (267)
153 4ay9_X Follicle-stimulating ho 91.7 0.073 2.5E-06 50.9 2.5 104 289-413 30-141 (350)
154 2e31_A FBS1, F-box only protei 88.9 0.32 1.1E-05 47.7 4.3 71 27-117 49-124 (297)
155 4hfx_A Transcription elongatio 84.1 0.38 1.3E-05 40.2 1.7 60 32-113 13-73 (97)
156 3sb4_A Hypothetical leucine ri 82.6 1.8 6.2E-05 40.6 6.0 105 280-407 217-327 (329)
157 2ovr_B FBW7, F-BOX/WD repeat p 71.4 5.5 0.00019 37.9 5.8 72 27-117 17-99 (445)
158 4fdw_A Leucine rich hypothetic 66.0 3.2 0.00011 41.1 2.9 39 284-328 175-213 (401)
159 3rfe_A Platelet glycoprotein I 58.3 4.6 0.00016 33.8 2.2 10 322-331 12-21 (130)
160 3rfe_A Platelet glycoprotein I 55.0 10 0.00035 31.7 3.8 13 319-331 56-68 (130)
161 1lm8_V VHL, VON hippel-lindau 51.0 12 0.00041 33.7 3.7 42 2-46 100-141 (160)
162 2nqb_D Histone H2B; nucleosome 46.6 13 0.00043 32.4 3.0 55 72-128 24-80 (123)
163 1tzy_B Histone H2B; histone-fo 41.6 15 0.00053 31.9 2.8 56 71-128 26-83 (126)
164 4fdw_A Leucine rich hypothetic 40.9 9 0.00031 37.8 1.4 16 372-387 344-359 (401)
165 1fs1_A SKP2 F-BOX, cyclin A/CD 33.0 29 0.00098 24.2 2.7 24 27-50 7-30 (53)
166 2jz3_A Suppressor of cytokine 30.8 67 0.0023 22.2 4.2 35 4-42 1-35 (40)
167 1p22_A F-BOX/WD-repeat protein 25.0 28 0.00096 33.0 1.9 25 28-52 10-38 (435)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.4e-20 Score=184.43 Aligned_cols=204 Identities=19% Similarity=0.202 Sum_probs=175.6
Q ss_pred cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056 196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (414)
Q Consensus 196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~ 274 (414)
.++|++|.++++ .++.++..+...+.... +|++|+|++|.+.+.++..++..+.++. ..+++|.+..|.+ +
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~---~~L~~L~L~~n~l-~--- 269 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPS---SRLRTLWIWECGI-T--- 269 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-C---
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCC---CCceEEECcCCCC-C---
Confidence 358999999988 77777778888887775 9999999999999999999999998766 6799999999988 6
Q ss_pred cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
......++.++..+++|++|+|++|++.++++..+...+.++.+.|++|+|++|.|++ ..+..++.++..+++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~--- 342 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVLAQNRF--- 342 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG----GGHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch----HHHHHHHHHHhhCCC---
Confidence 5566679999999999999999999999999999999999998899999999999998 445556667766666
Q ss_pred cceeehH--HHHhhc----cccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 355 LRLLNLS--HIAASL----GKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 355 L~~LnLs--~l~~ag----vk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|+|+ .+.+.+ ++.+ .++|++|+|++|.+++.|+.+++.++..+++|++||+++|+|+
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 9999995 333322 2222 4699999999999999999999999999999999999999985
No 2
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=187.22 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=155.5
Q ss_pred eeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHH
Q 015056 205 RWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSF 284 (414)
Q Consensus 205 ~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~ 284 (414)
.+|..+..-..+..... ++|++|+|++|.++..++..+...|.... ..++.|.+..+.+ + ......++.+
T Consensus 55 ~~cl~e~~~~~l~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~---~~L~~L~Ls~n~l-~---~~~~~~l~~~ 124 (372)
T 3un9_A 55 LFFHYEFQNQRFSAEVL---SSLRQLNLAGVRMTPVKCTVVAAVLGSGR---HALDEVNLASCQL-D---PAGLRTLLPV 124 (372)
T ss_dssp HHHHHHHHTHHHHHHHH---TTCCEEECTTSCCCHHHHHHHHHHHSSCS---SCEEEEECTTCCC-C---HHHHHHTHHH
T ss_pred HHHHHHhcCHHHHHHHH---hhCCEEEecCCCCCHHHHHHHHHHHhhCC---CCceEEEecCCCC-C---HHHHHHHHHH
Confidence 34444444444444433 46899999999999999999999998765 6799999999987 5 4556667766
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H 362 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~ 362 (414)
|. +|++|+|++|.+++.+++.|+.+|.++.|+|++|+|++|.|++ ..+..++.+|..+.+ |++|||+ .
T Consensus 125 L~---~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~~~~---L~~L~Ls~N~ 194 (372)
T 3un9_A 125 FL---RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA----AGVAVLMEGLAGNTS---VTHLSLLHTG 194 (372)
T ss_dssp HH---TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH----HHHHHHHHHHHTCSS---CCEEECTTSS
T ss_pred HH---hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh----HHHHHHHHHHhcCCC---cCEEeCCCCC
Confidence 66 7899999999999999999999999988999999999999998 556667778877766 9999995 3
Q ss_pred HH--------hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 363 IA--------ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 363 l~--------~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+. +++.. .++|++|+|++|.+|+.|+.+++.+|..|++|++|||++|.|+
T Consensus 195 l~~~g~~~L~~~L~~--~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 195 LGDEGLELLAAQLDR--NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CHHHHHHHHHHHGGG--CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcHHHHHHHHHHhc--CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 33 44444 7899999999999999999999999999999999999999985
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.8e-20 Score=183.71 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=173.0
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|++|.|+++ .++.++..+..++.... +|++|+|++|.+.+.++..+++++..+. +.+++|.+..|.+ + ..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l-~---~~ 157 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQ---CRLEKLQLEYCSL-S---AA 157 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-B---GG
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCC---CcceEEECCCCCC-C---HH
Confidence 6999999998 78888888888887775 9999999999999999999999998877 7899999999988 6 67
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~ 356 (414)
.+..++.++..+++|++|+|++|++.+.++..+..++.++.+.|++|+|++|.|++ .....++.++....+ |+
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~---L~ 230 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----DNCRDLCGIVASKAS---LR 230 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT----THHHHHHHHHHHCTT---CC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH----HHHHHHHHHHHhCCC---cc
Confidence 78889999999999999999999999999999999999988899999999999998 334445566765555 99
Q ss_pred eeehH--HHHhhcc----ccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 357 LLNLS--HIAASLG----KFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 357 ~LnLs--~l~~agv----k~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+|+|+ .+.+.++ ..+ .++|++|+|++|.+++.|+.+++.++..+++|++||+++|.|
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 99995 3333222 111 578999999999999999999999999999999999999987
No 4
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=9.3e-20 Score=176.49 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=153.1
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|++|.|++. .++.....++..+..+.++|++|+|++|.+...+...+++++.... ..++.|.+..+.+ + ..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~---~~L~~L~Ls~N~l-~---~~ 124 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP---FTITVLDLGWNDF-S---SK 124 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC---TTCCEEECCSSCG-G---GS
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC---CCccEEECcCCcC-C---cH
Confidence 6888888887 6666677788887777458888888888888888888888877653 4588888888887 6 56
Q ss_pred cHHHHHHHHhc-CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 277 VVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 277 ~~~~Las~Lss-n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
....++.++.. +++|++|+|++|.+.++++..++.++.+.+++|++|+|++|.|++ .....++.++..+. .+|
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~--~~L 198 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS----KNCAELAKFLASIP--ASV 198 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHTSC--TTC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch----hhHHHHHHHHHhCC--CCC
Confidence 67778888877 578888888888888888888888888887888888888888887 33444445665552 138
Q ss_pred ceeehH--HHHhhccc----cC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 356 RLLNLS--HIAASLGK----FF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 356 ~~LnLs--~l~~agvk----~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
++|||+ .+.+.++. .+ .++|++|+|++|.+++.|.++++.++..+++|++|++++|.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 888885 33332222 11 34788888888888888888888888888888888888886
No 5
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=1.9e-20 Score=181.41 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=118.6
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
..|+.|.|++. .++.....++..+..++++|++|+|++|.++..++..++.++..-. ..+++|.+..+.+ + .
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~---~~L~~L~Ls~N~l-~---~ 152 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP---ASITSLNLRGNDL-G---I 152 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC---TTCCEEECTTSCG-G---G
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC---CceeEEEccCCcC-C---H
Confidence 46666666666 5555555666666555346666666666666666666666665521 2366666666665 4 4
Q ss_pred ccHHHHHHHHhcCC-cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 276 SVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 276 ~~~~~Las~Lssn~-sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
.....++.++.... +|++|+|++|++.+.++..+...|...+++|++|||++|.|++ ..+..++.++.... .+
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~--~~ 226 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIP--NH 226 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSC--TT
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCC--CC
Confidence 45556666666554 6666666666666666666666666654566666666666666 22333444443321 13
Q ss_pred cceeehH--HHHhhcc----ccC--CCceeEEEeeccc---CCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 355 LRLLNLS--HIAASLG----KFF--GTSVQVLNIGAIG---LGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 355 L~~LnLs--~l~~agv----k~L--~c~Lq~L~L~~c~---lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|++|||+ .+.+.++ ..+ ..+|++|+|++|. +++.++.++++++..+++|+.||+++|+|
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 6666663 2221111 111 4556666666666 66666666666666666666666666665
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=2e-18 Score=167.46 Aligned_cols=205 Identities=18% Similarity=0.187 Sum_probs=145.0
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCcccc-----ccccceeeccccccc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR-----IHKIENLSIDISSFI 270 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~-----~C~lq~lsl~tc~~~ 270 (414)
.+|++|.|++. .+..+...+...+.... +|++|+|++|.++..++..+..++..-... ...+++|.+..+.+
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l- 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL- 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC-
Confidence 47777777777 66666666777776664 888888888888777777777766442000 02477888887776
Q ss_pred cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHH-HhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcC
Q 015056 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS-SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (414)
Q Consensus 271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~-~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~n 349 (414)
+ ....+.++.++..+++|+.|+|++|.+.+.|+..++. .+.+.+ +|++|+|++|.|++ .....++.++..+
T Consensus 172 ~---~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~----~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 172 E---NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTH----LGSSALAIALKSW 243 (386)
T ss_dssp T---GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHH----HHHHHHHHHGGGC
T ss_pred C---cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCc----HHHHHHHHHHccC
Confidence 4 4566677788888888888888888888888888888 666666 88888888888875 2223344556555
Q ss_pred cccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCCC
Q 015056 350 KSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPIS 414 (414)
Q Consensus 350 ks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i~ 414 (414)
.+ |++|+|+ .++.++...-..+|++|+|++|.+++.|++.+..++..| ++|++|++++|+|+
T Consensus 244 ~~---L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 244 PN---LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TT---CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CC---cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 54 8888884 123333111157788888888888888888888888665 88888888888874
No 7
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.77 E-value=6.3e-19 Score=163.88 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=116.7
Q ss_pred CCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056 273 CPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (414)
Q Consensus 273 ~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks 351 (414)
|+..+-+.|+.++..+.+|++|+|++| .++|+|++.|+.+|.. .+.|++|+|++|+|++ ..+..+|.+|..|++
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd----~ga~alA~aL~~N~t 99 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISD----SEARGLIELIETSPS 99 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBH----HHHTTHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCCh----HHHHHHHHHHhcCCc
Confidence 555666799999999999999999996 9999999999999995 5599999999999999 678889999999988
Q ss_pred cCCcceeehH----------HHHhhccccCCCceeEEEeecc---cCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 352 LQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAI---GLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 352 ~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c---~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|++|||+ ++++++.. +++|++|+|++| .+|+.|+++||++|+.|++|++|+++.|.+
T Consensus 100 ---L~~L~L~~N~Ig~~Ga~ala~aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 100 ---LRVLNVESNFLTPELLARLLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp ---CCEEECCSSBCCHHHHHHHHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ---cCeEecCCCcCCHHHHHHHHHHHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 9999993 56666666 999999999865 789999999999999999999999999875
No 8
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.77 E-value=6.9e-19 Score=157.66 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=116.5
Q ss_pred CCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056 273 CPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (414)
Q Consensus 273 ~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks 351 (414)
++....+.|+.++..+.+|++|+|++| .++|+|++.|+.+|...+ +|++|+|++|.|++ ..+..++.+|..+.+
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~----~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSND----PVAFALAEMLKVNNT 94 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCH----HHHHHHHHHHHHCSS
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCCh----HHHHHHHHHHHhCCC
Confidence 345667789999999999999999999 999999999999999876 99999999999998 445567778887776
Q ss_pred cCCcceeehH----------HHHhhccccCCCceeEEEe--ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 352 LQSLRLLNLS----------HIAASLGKFFGTSVQVLNI--GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 352 ~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L--~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|||+ ++++++.. +++|++|+| ++|.+|++|+++|+++|..|++|++|+|++|.|+
T Consensus 95 ---L~~L~L~~N~i~~~g~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 ---LKSLNVESNFISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ---CCEEECCSSCCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ---cCEEECcCCcCCHHHHHHHHHHHHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 9999993 56666666 899999999 8999999999999999999999999999999873
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=4.3e-18 Score=165.21 Aligned_cols=200 Identities=16% Similarity=0.204 Sum_probs=165.6
Q ss_pred cccccceeeeecc-------chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc
Q 015056 196 ESKLQSLVLRWIR-------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (414)
Q Consensus 196 ~ckLq~L~L~~~~-------s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~ 268 (414)
..+|++|.|+++. .+.++..++.+|.... +|++|+|++|.++..++..+...+..- ..+++|.+..|.
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~----~~L~~L~L~~n~ 133 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKH----TPLEHLYLHNNG 133 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHC----TTCCEEECCSSC
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhC----CCCCEEECcCCC
Confidence 3488889888761 2457788888887775 999999999999999999998888553 359999999998
Q ss_pred cccCCCcccHHHHHHHHhcC---------CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCC
Q 015056 269 FIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 339 (414)
Q Consensus 269 ~~~~~~~~~~~~Las~Lssn---------~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c 339 (414)
+ + ......++.+|..+ ++|++|+|++|++.+.++..+..++...+ +|++|+|++|.|++ ...
T Consensus 134 l-~---~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~----~g~ 204 (386)
T 2ca6_A 134 L-G---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRP----EGI 204 (386)
T ss_dssp C-H---HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCH----HHH
T ss_pred C-C---HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCH----hHH
Confidence 8 6 56677888888888 89999999999999999999999999988 99999999999996 112
Q ss_pred CChhh-hhhcCcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhc--CCCCcEE
Q 015056 340 SGPLF-SLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK--ELKLVNI 406 (414)
Q Consensus 340 ~~ls~-aL~~nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~--N~~L~~L 406 (414)
..++. ++..+. +|++|+|+ .+..++.+ ..+|+.|+|++|.+++.|+.+++.+|.. +++|++|
T Consensus 205 ~~l~~~~l~~~~---~L~~L~Ls~n~l~~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 205 EHLLLEGLAYCQ---ELKVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp HHHHHTTGGGCT---TCCEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred HHHHHHHhhcCC---CccEEECcCCCCCcHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 22223 554444 49999994 23444555 7899999999999999999999999977 9999999
Q ss_pred ecCCCCCC
Q 015056 407 NIRFKPIS 414 (414)
Q Consensus 407 dLs~N~i~ 414 (414)
+|++|.|+
T Consensus 280 ~L~~n~i~ 287 (386)
T 2ca6_A 280 RLQYNEIE 287 (386)
T ss_dssp ECCSSCCB
T ss_pred ECcCCcCC
Confidence 99999984
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.77 E-value=9.8e-19 Score=173.31 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=120.6
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
.+++|.|+++ .++..+..++.+|..+..+|++|+|++|.+++.++..++.++.+ +++|.+..|.+ + ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------L~~L~Ls~n~l-~---~~ 141 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-------ARKLGLQLNSL-G---PE 141 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT-------EEEEECCSSCC-C---HH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh-------ccHhhcCCCCC-C---HH
Confidence 4555666655 56666666666666554566666666666666666666666552 44666666665 4 45
Q ss_pred cHHHHHHHHh-cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 277 VVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 277 ~~~~Las~Ls-sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
....|+.+|. .+.+|++|+|++|.+.+.|++.+..+|...+ +|++|||++|.|++ .....++.+|..+.+ |
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~----~g~~~L~~~L~~~~~---L 213 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGD----EGLELLAAQLDRNRQ---L 213 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHH----HHHHHHHHHGGGCSC---C
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCc----HHHHHHHHHHhcCCC---c
Confidence 5556666664 3566666666666666666666666666555 56666666666665 223334445544443 6
Q ss_pred ceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEe--cCCCCC
Q 015056 356 RLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNIN--IRFKPI 413 (414)
Q Consensus 356 ~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~Ld--Ls~N~i 413 (414)
++|||+ .++.++.. +.+|++|+|++|.+|+.|+++|+.++..+ ..|+.+. +.+|.+
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~--~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAARE--HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHH--CSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CeEECCCCCCCHHHHHHHHHHHHh--CCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 666662 34444445 78899999999999999999999977665 3488877 777665
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.70 E-value=2.9e-17 Score=147.13 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=129.8
Q ss_pred HHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCccc
Q 015056 214 QALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC 292 (414)
Q Consensus 214 ~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~ 292 (414)
+.+..++..+. +|++|+|++| .+++.|+..|+++|..- ..+++|.+..+.+ . .+....|+.+|..+++|+
T Consensus 26 ~~l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~i-~---~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 26 ETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRS-N---DPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCC-C---HHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCCC-C---hHHHHHHHHHHHhCCCcC
Confidence 45666777775 9999999999 99999999999999763 4589999999887 6 677888999999999999
Q ss_pred EEEccCCCCCchhHHHHHHHhccCCCCccEEec--cCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhcccc
Q 015056 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL--SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (414)
Q Consensus 293 ~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdL--s~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk~ 370 (414)
+|+|++|.++|+|+..|+.+|.... +|++|+| ++|.|++ .... .+++++.+
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~----~g~~---------------------~l~~~L~~- 149 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNT-SLIELRIDNQSQPLGN----NVEM---------------------EIANMLEK- 149 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCCSSCCCH----HHHH---------------------HHHHHHHH-
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCCCCCCCH----HHHH---------------------HHHHHHHh-
Confidence 9999999999999999999999888 8999999 8899998 1111 44555666
Q ss_pred CCCceeEEEeecccCCchhHHHHHHHHhcCCCCc
Q 015056 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV 404 (414)
Q Consensus 371 L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~ 404 (414)
+.+|++|+|++|.+|+.|+ ++++|..|.+|+
T Consensus 150 -n~~L~~L~L~~n~i~~~~~--i~~~L~~N~~l~ 180 (185)
T 1io0_A 150 -NTTLLKFGYHFTQQGPRLR--ASNAMMNNNDLV 180 (185)
T ss_dssp -CSSCCEEECCCSSHHHHHH--HHHHHHHHHHHH
T ss_pred -CCCcCEEeccCCCCChHHH--HHHHHHhhHHHh
Confidence 8889999999999999985 999999997764
No 12
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.68 E-value=5.7e-17 Score=150.73 Aligned_cols=151 Identities=13% Similarity=0.230 Sum_probs=125.8
Q ss_pred HHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCccc
Q 015056 214 QALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC 292 (414)
Q Consensus 214 ~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~ 292 (414)
+.+.+++..|. +|++|+|++| .++++|+..||++|. + ++.++.|.+..+.+ . .+....||.+|+.|++|+
T Consensus 31 ~~l~~ll~~n~-~L~~L~L~~nn~igd~ga~~la~aL~-~---N~~L~~L~L~~n~i-g---d~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 31 SCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAAC-N---SKHIEKFSLANTAI-S---DSEARGLIELIETSPSLR 101 (197)
T ss_dssp HHHHHHHTTCS-SCCEEECTTCCSSCHHHHHHHHHHHT-T---CSCCCEEECTTSCC-B---HHHHTTHHHHHHHCSSCC
T ss_pred HHHHHHHhcCC-CccEEECCCCCCCCHHHHHHHHHHHh-h---CCCcCEEEccCCCC-C---hHHHHHHHHHHhcCCccC
Confidence 35666777775 9999999996 999999999999997 3 37899999999998 6 788899999999999999
Q ss_pred EEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC---CCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhccc
Q 015056 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN---SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (414)
Q Consensus 293 ~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n---~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk 369 (414)
+|+|+.|.++|+|++.|+.+|.++. +|++|+|++| .|++ ..+. ++++++..
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~-tL~~L~L~n~~~~~ig~----~g~~---------------------~ia~aL~~ 155 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGN----QVEM---------------------DMMMAIEE 155 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTC-CCSEEECCCCSSCCCCH----HHHH---------------------HHHHHHHH
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCC-ceeEEECCCCcCcCcCH----HHHH---------------------HHHHHHHh
Confidence 9999999999999999999999999 5999999976 5565 1122 45555556
Q ss_pred cCCCceeEEEeecccCCchhHHHHHHHHhcCCCC
Q 015056 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKL 403 (414)
Q Consensus 370 ~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L 403 (414)
+++|++|+++.|.+|+ ..++|++|+.|.++
T Consensus 156 --N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 156 --NESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp --CSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred --CCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 7777778887666554 35799999998765
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2e-12 Score=121.71 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=126.5
Q ss_pred hhchhccc-cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccc
Q 015056 190 TCQLLRES-KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDI 266 (414)
Q Consensus 190 ~~~l~~~c-kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t 266 (414)
....+..+ +|++|.|+++ .++.. ...+.. .++|++|+|++| .+++.++..+...+ + ++++|.+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~--~-----~L~~L~l~~ 177 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPI----VNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC--S-----RLDELNLSW 177 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHH----HHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC--T-----TCCEEECCC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHH----HHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcC--C-----CCCEEcCCC
Confidence 34444544 7888888877 33332 223333 468999999999 78877777655544 2 377888888
Q ss_pred c-ccccCCCcccHHHHHHHHhcCC-cccEEEccCC--CCCchhHHHHHHHhccCCCCccEEeccCCC-CCCcccccCCCC
Q 015056 267 S-SFIENCPSSVVVELVSFLSSGR-SLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSG 341 (414)
Q Consensus 267 c-~~~~~~~~~~~~~Las~Lssn~-sL~~L~Ls~N--~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~~~~c~~ 341 (414)
| .+ + ...+...+.... +|++|+|++| .+.|.++..++..+ + +|++|+|++|. +++ ..
T Consensus 178 ~~~l-~------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~---~-~L~~L~l~~~~~l~~------~~- 239 (336)
T 2ast_B 178 CFDF-T------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---P-NLVHLDLSDSVMLKN------DC- 239 (336)
T ss_dssp CTTC-C------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---T-TCSEEECTTCTTCCG------GG-
T ss_pred CCCc-C------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC---C-CCCEEeCCCCCcCCH------HH-
Confidence 8 66 4 123566777788 9999999999 67877776655543 4 89999999998 665 11
Q ss_pred hhhhhhcCcccCCcceeehH---HHHhh----ccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 342 PLFSLGAGKSLQSLRLLNLS---HIAAS----LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 342 ls~aL~~nks~~~L~~LnLs---~l~~a----gvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
. .++.... +|++|+|+ .+.+. +.+ ..+|+.|+|++| +++++.+.+++ +|++|++++|.++
T Consensus 240 ~-~~l~~l~---~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~l~~n~l~ 306 (336)
T 2ast_B 240 F-QEFFQLN---YLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQINCSHFT 306 (336)
T ss_dssp G-GGGGGCT---TCCEEECTTCTTCCGGGGGGGGG--CTTCCEEECTTS-SCTTCHHHHHH------HSTTSEESCCCSC
T ss_pred H-HHHhCCC---CCCEeeCCCCCCCCHHHHHHHhc--CCCCCEEeccCc-cCHHHHHHHHh------hCcceEEecccCc
Confidence 1 3444444 59999995 23333 344 678999999999 99999888874 3667888888874
No 14
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=1.9e-11 Score=115.02 Aligned_cols=182 Identities=16% Similarity=0.178 Sum_probs=131.2
Q ss_pred hccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecccc-cccc
Q 015056 194 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIE 271 (414)
Q Consensus 194 ~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc-~~~~ 271 (414)
+.-.+|++|.|+++ .+..... ....+.++|++|+|++|.+.+.....+.. -+ ++++|.+..| .+ +
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~l~~---~~-----~L~~L~L~~~~~l-~ 156 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLH----GILSQCSKLQNLSLEGLRLSDPIVNTLAK---NS-----NLVRLNLSGCSGF-S 156 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHH----HHHTTBCCCSEEECTTCBCCHHHHHHHTT---CT-----TCSEEECTTCBSC-C
T ss_pred ccCCCCCEEEccCCCcCHHHHH----HHHhhCCCCCEEeCcCcccCHHHHHHHhc---CC-----CCCEEECCCCCCC-C
Confidence 34467888888877 3333222 33456679999999999998887776643 23 4889999988 44 4
Q ss_pred CCCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCC--CCCCcccccCCCChhhhhhc
Q 015056 272 NCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGA 348 (414)
Q Consensus 272 ~~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n--~Lt~wl~~~~c~~ls~aL~~ 348 (414)
...+..++...++|++|+|++| .+.+.++..++..+.. +|++|+|++| .+++ .. +...+..
T Consensus 157 ------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~---~L~~L~l~~~~~~~~~------~~-l~~~~~~ 220 (336)
T 2ast_B 157 ------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---TITQLNLSGYRKNLQK------SD-LSTLVRR 220 (336)
T ss_dssp ------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT---TCCEEECCSCGGGSCH------HH-HHHHHHH
T ss_pred ------HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc---CCCEEEeCCCcccCCH------HH-HHHHHhh
Confidence 1247777888999999999999 9999887766665432 8999999999 5664 11 3234433
Q ss_pred CcccCCcceeehH--H-HHhhccccC--CCceeEEEeecc-cCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056 349 GKSLQSLRLLNLS--H-IAASLGKFF--GTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINIRFK 411 (414)
Q Consensus 349 nks~~~L~~LnLs--~-l~~agvk~L--~c~Lq~L~L~~c-~lg~~gcqaLa~aL~~N~~L~~LdLs~N 411 (414)
.. +|++|+|+ . +.+.+...+ -.+|+.|+|++| ++++.+... +...++|++|+|++|
T Consensus 221 ~~---~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CP---NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGI 282 (336)
T ss_dssp CT---TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTS
T ss_pred CC---CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH----HhcCCCCCEEeccCc
Confidence 34 59999995 2 333333222 589999999999 788887744 456889999999998
No 15
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.05 E-value=6.5e-11 Score=111.87 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=19.0
Q ss_pred hccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCC
Q 015056 194 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLS 238 (414)
Q Consensus 194 ~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~ 238 (414)
++..++++|.+..+ .++.....+...+.. ++|++|+|++|.+.
T Consensus 61 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~ 104 (310)
T 4glp_A 61 VKALRVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKIT 104 (310)
T ss_dssp GSSCCCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCB
T ss_pred hhhcceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEec
Confidence 34444555555554 444444444333221 13555555555443
No 16
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.03 E-value=1.6e-09 Score=109.45 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=106.1
Q ss_pred hhchhccc-cccceeeeecc-chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccc-
Q 015056 190 TCQLLRES-KLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI- 266 (414)
Q Consensus 190 ~~~l~~~c-kLq~L~L~~~~-s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t- 266 (414)
++..+..+ +|++|.|+++. +... + ..++++.++|++|+++ +.+.+.++..+...+. ++++|.+..
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~---~-~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~-------~L~~L~L~~g 352 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETED---H-CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK-------QLKRLRIERG 352 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHH---H-HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT-------TCCEEEEECC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHH---H-HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC-------CCCEEEeecC
Confidence 33444443 67777777663 3322 2 2334555677777777 5566666665544322 255666663
Q ss_pred ---------cccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEecc----CCCCCCc
Q 015056 267 ---------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS----GNSIGGW 333 (414)
Q Consensus 267 ---------c~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs----~n~Lt~w 333 (414)
|...+ ...+..+...+++|++|+|+.|.+.+++...+...+. +|++|+|+ .|.|++.
T Consensus 353 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 353 ADEQGMEDEEGLVS------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK----NLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCSSTTSSTTCCCC------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC----SCCEEEEEECSCCSCCSSC
T ss_pred ccccccccccCccC------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC----CCcEEEEeecCCCccccCc
Confidence 33212 1234444455666777777777776666666554332 56666664 4555541
Q ss_pred -----ccc--cCCCCh----------------hhhhhcCcccCCcceeehH--HHHhh----ccccCCCceeEEEeeccc
Q 015056 334 -----LSK--YDRSGP----------------LFSLGAGKSLQSLRLLNLS--HIAAS----LGKFFGTSVQVLNIGAIG 384 (414)
Q Consensus 334 -----l~~--~~c~~l----------------s~aL~~nks~~~L~~LnLs--~l~~a----gvk~L~c~Lq~L~L~~c~ 384 (414)
+.. ..|..+ ...+. ..+.+|++|+|+ .+.+. ..+. -.+|+.|+|++|.
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVGESDEGLMEFSRG-CPNLQKLEMRGCC 499 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCCSSHHHHHHHHTC-CTTCCEEEEESCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCCCCHHHHHHHHhc-CcccCeeeccCCC
Confidence 000 001100 01111 113447777774 22221 1120 3568888888888
Q ss_pred CCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 385 LGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 385 lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+++.|..+++.. -++|++|+|++|+|+
T Consensus 500 l~~~~~~~~~~~---l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 500 FSERAIAAAVTK---LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CBHHHHHHHHHH---CSSCCEEEEESCBCC
T ss_pred CcHHHHHHHHHh---cCccCeeECcCCcCC
Confidence 887777766654 367888888888874
No 17
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=2.3e-10 Score=113.72 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=25.3
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+|++|+|+.|.+++.|+++|+..|+.+++|++|+|+.|.|+
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 456666666666666666666666655566666666666553
No 18
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.99 E-value=5.1e-10 Score=105.76 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=117.6
Q ss_pred hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (414)
Q Consensus 221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~ 300 (414)
+.+. .++.|.+.++.+....+..+...+..+. +++|.+..+.+ + ...+..++. ....+|+.|+|++|+
T Consensus 61 ~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~~~~-----L~~L~l~~n~l-~---~~~~~~~~~--~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 61 VKAL-RVRRLTVGAAQVPAQLLVGALRVLAYSR-----LKELTLEDLKI-T---GTMPPLPLE--ATGLALSSLRLRNVS 128 (310)
T ss_dssp GSSC-CCCEEEECSCCCBHHHHHHHHHHHHHSC-----CCEEEEESCCC-B---SCCCCCSSS--CCCBCCSSCEEESCC
T ss_pred hhhc-ceeEEEEeCCcCCHHHHHHHHHhcccCc-----eeEEEeeCCEe-c---cchhhhhhh--ccCCCCCEEEeeccc
Confidence 3444 7899999999999999998888877766 89999998887 4 222222211 667899999999999
Q ss_pred CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH-Hh-----hc--ccc
Q 015056 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI-AA-----SL--GKF 370 (414)
Q Consensus 301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l-~~-----ag--vk~ 370 (414)
+...+...-...+...+ +|++|+|++|.|++ ..+. ++.. +.+|++|||+ .+ ++ .. .+
T Consensus 129 i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~----~~~~----~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~- 195 (310)
T 4glp_A 129 WATGRSWLAELQQWLKP-GLKVLSIAQAHSPA----FSCE----QVRA---FPALTSLDLSDNPGLGERGLMAALCPHK- 195 (310)
T ss_dssp CSSTTSSHHHHHTTBCS-CCCEEEEECCSSCC----CCTT----SCCC---CTTCCEEECCSCTTCHHHHHHTTSCTTS-
T ss_pred ccchhhhhHHHHhhhcc-CCCEEEeeCCCcch----hhHH----Hhcc---CCCCCEEECCCCCCccchhhhHHHhhhc-
Confidence 98765544334555566 99999999999987 3333 3333 3459999995 22 21 11 22
Q ss_pred CCCceeEEEeecccCCchhHHHHHHH-HhcCCCCcEEecCCCCCC
Q 015056 371 FGTSVQVLNIGAIGLGSSGFRVLQDG-VTKELKLVNINIRFKPIS 414 (414)
Q Consensus 371 L~c~Lq~L~L~~c~lg~~gcqaLa~a-L~~N~~L~~LdLs~N~i~ 414 (414)
-.+|++|+|++|.++..+. +..+ +..-++|++||+++|+|+
T Consensus 196 -l~~L~~L~Ls~N~l~~l~~--~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 196 -FPAIQNLALRNTGMETPTG--VCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp -SCCCCSCBCCSSCCCCHHH--HHHHHHHHTCCCSSEECTTSCCC
T ss_pred -CCCCCEEECCCCCCCchHH--HHHHHHhcCCCCCEEECCCCCCC
Confidence 4579999999999975432 2333 345578999999998874
No 19
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=1.4e-09 Score=109.61 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=62.8
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-----cc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-----FI 270 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-----~~ 270 (414)
.+|++|.|+++ .++.. ...++++.++|++|++++| +.+.++..+...+ + ++++|.+..|. .|
T Consensus 289 ~~L~~L~L~~~~l~~~~----l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~--~-----~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYD----LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC--K-----DLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp TTCCEEECTTCCCCHHH----HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC--T-----TCCEEEEECSCTTCSSCS
T ss_pred CCCCEEEccCCCCCHHH----HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC--C-----CCCEEEEecCcccccccC
Confidence 37788877776 33222 3344556567888888877 6666666555432 1 25566663321 00
Q ss_pred cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEecc
Q 015056 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 326 (414)
Q Consensus 271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs 326 (414)
. .-....+..+...+++|++|.++.|.+.+.++..+...+ + +|++|+|+
T Consensus 357 ~---~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~---~-~L~~L~L~ 405 (594)
T 2p1m_B 357 V---ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR---P-NMTRFRLC 405 (594)
T ss_dssp S---CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC---T-TCCEEEEE
T ss_pred C---CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC---C-CcceeEee
Confidence 1 111223444444566777777777777777666655443 2 56777776
No 20
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=2.7e-09 Score=107.69 Aligned_cols=189 Identities=13% Similarity=0.066 Sum_probs=121.9
Q ss_pred cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCccc
Q 015056 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (414)
Q Consensus 198 kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~ 277 (414)
+|++|.+.++... . ...+..+.++|++|+|++|.+...++..+...+ .++++|.+..+..
T Consensus 271 ~L~~L~l~~~~~~-~----l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-------~~L~~L~L~~~~~-------- 330 (592)
T 3ogk_B 271 KLCRLGLSYMGPN-E----MPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-------PNLEVLETRNVIG-------- 330 (592)
T ss_dssp TCCEEEETTCCTT-T----GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-------TTCCEEEEEGGGH--------
T ss_pred cccccCccccchh-H----HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-------cCCCEEeccCccC--------
Confidence 6777777654211 1 122445567999999999998887765433322 2488888874332
Q ss_pred HHHHHHHHhcCCcccEEEcc-----------CCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc---cCCCChh
Q 015056 278 VVELVSFLSSGRSLCSLKLR-----------HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK---YDRSGPL 343 (414)
Q Consensus 278 ~~~Las~Lssn~sL~~L~Ls-----------~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~---~~c~~ls 343 (414)
...+..+...+++|++|+|+ .|.+.+.+...+...+ + +|++|+|+.|.|++..-. ..|..+
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~-~L~~L~l~~~~l~~~~~~~l~~~~~~L- 405 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---Q-ELEYMAVYVSDITNESLESIGTYLKNL- 405 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC---T-TCSEEEEEESCCCHHHHHHHHHHCCSC-
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC---c-cCeEEEeecCCccHHHHHHHHhhCCCC-
Confidence 23566777788999999999 4899999998887665 3 899999999999871100 001111
Q ss_pred hhhhc---------------------CcccCCcceeehH----HHHhhccccC---CCceeEEEeecccCCchhHHHHHH
Q 015056 344 FSLGA---------------------GKSLQSLRLLNLS----HIAASLGKFF---GTSVQVLNIGAIGLGSSGFRVLQD 395 (414)
Q Consensus 344 ~aL~~---------------------nks~~~L~~LnLs----~l~~agvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~ 395 (414)
..|.. ..++.+|++|+|+ .+.+.+...+ ..+|+.|+|+.|++++.|..++..
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence 00000 1124457777772 1222222111 356899999999999887766544
Q ss_pred HHhcCCCCcEEecCCCCCC
Q 015056 396 GVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 396 aL~~N~~L~~LdLs~N~i~ 414 (414)
. -++|++|+|++|.|+
T Consensus 486 ~---~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 486 G---CPNLQKLEMRGCCFS 501 (592)
T ss_dssp C---CTTCCEEEEESCCCB
T ss_pred c---CcccCeeeccCCCCc
Confidence 3 478999999999863
No 21
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2.9e-10 Score=113.04 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=100.9
Q ss_pred HHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEE
Q 015056 216 LCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLK 295 (414)
Q Consensus 216 L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~ 295 (414)
+...+.+. ++|++|+|++|. ++ .-+..+.+++++|.+..|.+ + .+....++ ....++|++|+
T Consensus 164 L~~ll~~~-P~L~~L~L~g~~----~l-------~l~~~~~~~L~~L~L~~~~l-~---~~~l~~l~--~~~lp~L~~L~ 225 (362)
T 2ra8_A 164 LSPVLDAM-PLLNNLKIKGTN----NL-------SIGKKPRPNLKSLEIISGGL-P---DSVVEDIL--GSDLPNLEKLV 225 (362)
T ss_dssp CHHHHHTC-TTCCEEEEECCB----TC-------BCCSCBCTTCSEEEEECSBC-C---HHHHHHHH--HSBCTTCCEEE
T ss_pred HHHHHhcC-CCCcEEEEeCCC----Cc-------eeccccCCCCcEEEEecCCC-C---hHHHHHHH--HccCCCCcEEE
Confidence 33444443 488888888772 11 11112245688888877765 3 22222222 12567888888
Q ss_pred ccC---CCCCchhHHHHHHHhccC-CCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccc
Q 015056 296 LRH---CHLDRDFGRMVFSSLLEA-SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGK 369 (414)
Q Consensus 296 Ls~---N~L~d~gaklL~~~Ll~~-~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk 369 (414)
|+. +..++.+++.|...+... ..+|+.|+|++|.|++ ..+ .++.....+.+|++|||+ .+.+.|++
T Consensus 226 L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~~~----~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVV----EMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp EECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----HHH----HHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred EeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----HHH----HHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 753 223444455544444422 2388888888888876 212 233322334568888885 34443322
Q ss_pred cC------CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 370 FF------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 370 ~L------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
.+ .++|++|+|+.|.+|++|+++|++|+ ..++|++.|+
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 22 47899999999999999999999998 6668888774
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=3.5e-09 Score=100.26 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|++++|.+..... +.. --.++.+.+..+.+ + .... +...++|+.|+|++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~------~~~----l~~L~~L~l~~n~l-~----~~~~-----~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP------LAS----LTSLHYFTAYVNQI-T----DITP-----VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCC-C----CCGG-----GGGCTTCCEEECCSSCC
T ss_pred ccCCCCCEEEccCCccccccc------ccC----CCccceeecccCCC-C----CCch-----hhcCCcCCEEEccCCcc
Confidence 344577777777776654321 111 12244555554444 2 0110 45556666666666666
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+... +...+ +|++|+|++|.|++
T Consensus 234 ~~~~~------~~~l~-~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 234 TDLSP------LANLS-QLTWLEIGTNQISD 257 (347)
T ss_dssp CCCGG------GTTCT-TCCEEECCSSCCCC
T ss_pred CCCcc------hhcCC-CCCEEECCCCccCC
Confidence 55433 33333 56666666666655
No 23
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=4.7e-09 Score=105.75 Aligned_cols=17 Identities=6% Similarity=0.471 Sum_probs=12.4
Q ss_pred ccCCChhhHHHHHhcCC
Q 015056 29 VYELPADLFDILLTCLP 45 (414)
Q Consensus 29 ~~~Lp~~~~~~v~~~Lp 45 (414)
+.+||+|.+..|+..||
T Consensus 6 ~~~LPdevL~~If~~L~ 22 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQ 22 (594)
T ss_dssp ----CHHHHHHHHHTCC
T ss_pred hhhCCHHHHHHHHhhcC
Confidence 57899999999999999
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=1.9e-09 Score=102.63 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=111.1
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
-+|+.|.|++. .+.... ..+.++|++|+|++|.+.... .+.. --.+++|.+..+.+ +
T Consensus 63 ~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~l~~~~------~~~~----l~~L~~L~l~~n~l-~---- 120 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-------LKNLTKITELELSGNPLKNVS------AIAG----LQSIKTLDLTSTQI-T---- 120 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCCCSCCG------GGTT----CTTCCEEECTTSCC-C----
T ss_pred CCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCcCCCch------hhcC----CCCCCEEECCCCCC-C----
Confidence 46777777766 322211 456678999999999887632 2222 13588888888887 4
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
..+ .+...++|++|+|++|++.+-.. +...+ .|+.|+|++|.|++ -. .+.. +.+|
T Consensus 121 ~~~-----~l~~l~~L~~L~l~~n~l~~~~~------l~~l~-~L~~L~l~~n~l~~------~~----~l~~---l~~L 175 (308)
T 1h6u_A 121 DVT-----PLAGLSNLQVLYLDLNQITNISP------LAGLT-NLQYLSIGNAQVSD------LT----PLAN---LSKL 175 (308)
T ss_dssp CCG-----GGTTCTTCCEEECCSSCCCCCGG------GGGCT-TCCEEECCSSCCCC------CG----GGTT---CTTC
T ss_pred Cch-----hhcCCCCCCEEECCCCccCcCcc------ccCCC-CccEEEccCCcCCC------Ch----hhcC---CCCC
Confidence 121 26778899999999999877554 55555 89999999999987 11 1332 3458
Q ss_pred ceeehH--HHHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 356 RLLNLS--HIAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 356 ~~LnLs--~l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++|+|+ .+.+ .+.. -.+|+.|+|++|.+++.. .+...++|++|++++|.|
T Consensus 176 ~~L~l~~n~l~~~~~l~~--l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDISPLAS--LPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCGGGGG--CTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcChhhcC--CCCCCEEEccCCccCccc------cccCCCCCCEEEccCCee
Confidence 888884 1111 1334 678999999999998876 267778899999999876
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.90 E-value=1.8e-09 Score=105.75 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=19.6
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHh
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSL 313 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~L 313 (414)
...+|+.|+|++|++.......+...+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred ccceeeeEecCCCcccccchhhhhccc
Confidence 446788888888888777777766653
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.90 E-value=4.8e-09 Score=99.39 Aligned_cols=156 Identities=21% Similarity=0.143 Sum_probs=97.0
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHH--hcCCcccEEEccCCCCC
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLD 302 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~L--ssn~sL~~L~Ls~N~L~ 302 (414)
++|++|+|++|.+...... .+.. --.+++|.+..+.+ . . ...+-..+ ....+|+.|+|++|++.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~----~~~~----l~~L~~L~Ls~N~l-~----~-~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE----QVRV----FPALSTLDLSDNPE-L----G-ERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT----TCCC----CSSCCEEECCSCTT-C----H-HHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCcEEEeeCCCCccchHH----Hhcc----CCCCCEEECCCCCc-C----c-chHHHHHHHhccCCCCCEEECCCCcCc
Confidence 4677777777766542211 1111 13477777776665 2 0 01122222 66789999999999997
Q ss_pred chhHHHHHHHhc-cCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCceeEEE
Q 015056 303 RDFGRMVFSSLL-EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLN 379 (414)
Q Consensus 303 d~gaklL~~~Ll-~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~Lq~L~ 379 (414)
.-+ .+...+. ..+ +|++|+|++|.|++... . ..+ ..+.+|++|+|+ .+. .+-..+..+|+.|+
T Consensus 215 ~~~--~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~------~-~~~---~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~ 280 (312)
T 1wwl_A 215 TPS--GVCSALAAARV-QLQGLDLSHNSLRDAAG------A-PSC---DWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLD 280 (312)
T ss_dssp CHH--HHHHHHHHTTC-CCSEEECTTSCCCSSCC------C-SCC---CCCTTCCEEECTTSCCS-SCCSSCCSEEEEEE
T ss_pred chH--HHHHHHHhcCC-CCCEEECCCCcCCcccc------h-hhh---hhcCCCCEEECCCCccC-hhhhhccCCceEEE
Confidence 422 2333333 334 89999999999987221 0 111 123459999996 333 23232347899999
Q ss_pred eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|.++..- . +..-++|++|++++|+|+
T Consensus 281 Ls~N~l~~~p--~----~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 281 LSYNRLDRNP--S----PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSSCCCSCC--C----TTTSCEEEEEECTTCTTT
T ss_pred CCCCCCCCCh--h----HhhCCCCCEEeccCCCCC
Confidence 9999998761 1 556688999999999985
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.88 E-value=5.1e-09 Score=99.08 Aligned_cols=163 Identities=14% Similarity=0.139 Sum_probs=116.3
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
.+|+.|.+++. .+.... ..+.++|+.|++++|.+..... +.. -.+++.|.+..+.+ +
T Consensus 177 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~------~~~----~~~L~~L~l~~n~l-~---- 234 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDITP------VAN----MTRLNSLKIGNNKI-T---- 234 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG------GGG----CTTCCEEECCSSCC-C----
T ss_pred CCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCCch------hhc----CCcCCEEEccCCcc-C----
Confidence 36777777766 222111 4455799999999998876443 111 13588999998887 5
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
..+. +....+|+.|+|++|.+.+- ..+...+ +|++|+|++|.|+++ .++... .+|
T Consensus 235 ~~~~-----~~~l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~l~~n~l~~~----------~~~~~l---~~L 289 (347)
T 4fmz_A 235 DLSP-----LANLSQLTWLEIGTNQISDI------NAVKDLT-KLKMLNVGSNQISDI----------SVLNNL---SQL 289 (347)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCCC------GGGTTCT-TCCEEECCSSCCCCC----------GGGGGC---TTC
T ss_pred CCcc-----hhcCCCCCEEECCCCccCCC------hhHhcCC-CcCEEEccCCccCCC----------hhhcCC---CCC
Confidence 1221 77889999999999999874 3466666 999999999999982 234333 449
Q ss_pred ceeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 356 RLLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 356 ~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|+|+ ...+.+.+ -.+|+.|+|++|.++.... +..-++|++||+++|.|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGG--LTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHT--CTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhc--cccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence 999994 22233444 5789999999999998654 667789999999999984
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=1.7e-09 Score=95.89 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--
Q 015056 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-- 361 (414)
Q Consensus 284 ~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-- 361 (414)
.+...++|+.|+|++|++.+..... +...+ +|++|+|++|.|++. ....+.... +|++|+|+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~-~L~~L~Ls~n~i~~~--------~~~~l~~l~---~L~~L~L~~n 146 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPN----LSGLT-SLTLLDISHSAHDDS--------ILTKINTLP---KVNSIDLSYN 146 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCC----CTTCT-TCCEEECCSSBCBGG--------GHHHHTTCS---SCCEEECCSC
T ss_pred hhhcCCCCCEEEeECCccCcccChh----hcCCC-CCCEEEecCCccCcH--------hHHHHhhCC---CCCEEEccCC
Confidence 3455677777777777776544332 23334 677777777777751 113343333 47777774
Q ss_pred H-HHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 362 H-IAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 362 ~-l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
. +.+ .+.. -.+|+.|++++|.+++.. .+..-++|++|++++|+|+
T Consensus 147 ~~i~~~~~l~~--l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 147 GAITDIMPLKT--LPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCCCCGGGGG--CSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred CCccccHhhcC--CCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 2 221 1223 467899999999998743 5667788999999999985
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.83 E-value=3.9e-09 Score=99.79 Aligned_cols=144 Identities=21% Similarity=0.167 Sum_probs=103.5
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
++.++|++|+|++|.+..-.- +.. --.++.|.+..+.+ + . +. .+...++|++|+|++|.+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~------l~~----l~~L~~L~l~~n~l-~----~----~~-~l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP------LAN----LKNLGWLFLDENKV-K----D----LS-SLKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG------GTT----CTTCCEEECCSSCC-C----C----GG-GGTTCTTCCEEECTTSCC
T ss_pred hcCCCCCEEEccCCccCCCcc------ccc----CCCCCEEECCCCcC-C----C----Ch-hhccCCCCCEEECCCCcC
Confidence 445689999999998865321 111 13477888887776 4 1 11 267789999999999999
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~ 377 (414)
.+- ..+...+ +|++|+|++|.|++ . ..+.... +|++|+|+ .+.+ .+.. -.+|+.
T Consensus 125 ~~~------~~l~~l~-~L~~L~l~~n~l~~----~------~~l~~l~---~L~~L~L~~N~l~~~~~l~~--l~~L~~ 182 (291)
T 1h6t_A 125 SDI------NGLVHLP-QLESLYLGNNKITD----I------TVLSRLT---KLDTLSLEDNQISDIVPLAG--LTKLQN 182 (291)
T ss_dssp CCC------GGGGGCT-TCCEEECCSSCCCC----C------GGGGGCT---TCSEEECCSSCCCCCGGGTT--CTTCCE
T ss_pred CCC------hhhcCCC-CCCEEEccCCcCCc----c------hhhccCC---CCCEEEccCCccccchhhcC--CCccCE
Confidence 873 4566666 89999999999998 2 2444444 49999995 2211 1334 678999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|+|++|.+++.. .+...++|+.|++++|+|
T Consensus 183 L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 183 LYLSKNHISDLR------ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCBCG------GGTTCTTCSEEEEEEEEE
T ss_pred EECCCCcCCCCh------hhccCCCCCEEECcCCcc
Confidence 999999999852 477788999999999975
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=1.6e-08 Score=96.20 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=107.2
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+..-.. +.. --.+++|.+..+.+ + .. ..+....+|++|+|++|++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~------~~~----l~~L~~L~L~~n~l-~----~~-----~~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP------LKN----LTKITELELSGNPL-K----NV-----SAIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG------GTT----CCSCCEEECCSCCC-S----CC-----GGGTTCTTCCEEECTTSCC
T ss_pred hccCCCCEEEccCCcCCCChh------Hcc----CCCCCEEEccCCcC-C----Cc-----hhhcCCCCCCEEECCCCCC
Confidence 455799999999998875332 111 13488999998887 5 11 1467789999999999999
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~ 377 (414)
.+-. .+...+ +|++|+|++|.|++ -. .+.. +.+|++|+|+ .+.+ .+.+ -.+|+.
T Consensus 120 ~~~~------~l~~l~-~L~~L~l~~n~l~~------~~----~l~~---l~~L~~L~l~~n~l~~~~~l~~--l~~L~~ 177 (308)
T 1h6u_A 120 TDVT------PLAGLS-NLQVLYLDLNQITN------IS----PLAG---LTNLQYLSIGNAQVSDLTPLAN--LSKLTT 177 (308)
T ss_dssp CCCG------GGTTCT-TCCEEECCSSCCCC------CG----GGGG---CTTCCEEECCSSCCCCCGGGTT--CTTCCE
T ss_pred CCch------hhcCCC-CCCEEECCCCccCc------Cc----cccC---CCCccEEEccCCcCCCChhhcC--CCCCCE
Confidence 8743 356666 99999999999997 11 2333 3459999995 2211 1333 578999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+|++|.+++... +...++|++|++++|+|+
T Consensus 178 L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 178 LKADDNKISDISP------LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EECCSSCCCCCGG------GGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCcChh------hcCCCCCCEEEccCCccC
Confidence 9999999998654 678899999999999984
No 31
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.81 E-value=9e-09 Score=97.30 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=106.2
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|++++|.+..-. .+.. --+++.|.+..+.+ + ... . +....+|+.|+|++|++.+-
T Consensus 46 ~~L~~L~l~~~~i~~~~------~~~~----l~~L~~L~L~~n~l-~----~~~----~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ------GIQY----LPNVTKLFLNGNKL-T----DIK----P-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTCCEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCC-C----CCG----G-GTTCTTCCEEECCSSCCCCG
T ss_pred CcccEEEccCCCcccCh------hHhc----CCCCCEEEccCCcc-C----CCc----c-cccCCCCCEEECCCCcCCCC
Confidence 58999999999876431 1211 13488899988887 4 122 2 78889999999999999873
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEE
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLN 379 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~ 379 (414)
..+...+ +|++|+|++|.|++ . ..+... .+|++|+|+ .+ ..+.+ -.+|+.|+
T Consensus 106 ------~~l~~l~-~L~~L~L~~n~i~~----~------~~l~~l---~~L~~L~l~~n~l~~~-~~l~~--l~~L~~L~ 162 (291)
T 1h6t_A 106 ------SSLKDLK-KLKSLSLEHNGISD----I------NGLVHL---PQLESLYLGNNKITDI-TVLSR--LTKLDTLS 162 (291)
T ss_dssp ------GGGTTCT-TCCEEECTTSCCCC----C------GGGGGC---TTCCEEECCSSCCCCC-GGGGG--CTTCSEEE
T ss_pred ------hhhccCC-CCCEEECCCCcCCC----C------hhhcCC---CCCCEEEccCCcCCcc-hhhcc--CCCCCEEE
Confidence 3466666 99999999999998 2 234333 449999995 23 33444 68899999
Q ss_pred eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|.+++... +...++|++|++++|.|+
T Consensus 163 L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 163 LEDNQISDIVP------LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred ccCCccccchh------hcCCCccCEEECCCCcCC
Confidence 99999998753 677899999999999985
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.78 E-value=3.8e-08 Score=98.38 Aligned_cols=44 Identities=25% Similarity=0.180 Sum_probs=24.7
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
....+|+.|+|++|++.. +..+...+...+ +|++|+|++|.|++
T Consensus 345 ~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~-~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKE--LSKIAEMTTQMK-SLQQLDISQNSVSY 388 (520)
T ss_dssp CCCSSCCEEECCSSCCCB--HHHHHHHHTTCT-TCCEEECCSSCCBC
T ss_pred ccCCCCCEEEccCCccCc--cccchHHHhhCC-CCCEEECCCCcCCc
Confidence 455666666666666653 112223344444 66666776666665
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=102.14 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=26.7
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
....+|++|+|++|++.+... ..+...+ .|++|+|++|.|++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF----ENCGHLT-ELETLILQMNQLKE 362 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT----TTCCCCS-SCCEEECCSSCCCB
T ss_pred hhCCcccEEEeECCccChhhh----hhhccCC-CCCEEEccCCccCc
Confidence 345677777777777765322 2234444 77777777777775
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.75 E-value=9.5e-09 Score=100.58 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccc-------------------------------cccccceeeccccccccCC
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRK-------------------------------RIHKIENLSIDISSFIENC 273 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v-------------------------------~~C~lq~lsl~tc~~~~~~ 273 (414)
++|++|++++|.+.......++..+..+.. ...+++.+.+..+.+ +
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~-- 288 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-F-- 288 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-C--
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc-c--
Confidence 478888888888888777777766433320 002455666665555 3
Q ss_pred CcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccC
Q 015056 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (414)
Q Consensus 274 ~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~ 353 (414)
. .+...+...++|+.|+|++|++.+.... .+...+ .|++|+|++|.|++ .. ..++....
T Consensus 289 -~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~Ls~N~l~~----~~----~~~~~~l~--- 347 (455)
T 3v47_A 289 -A----LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLT-HLLKLNLSQNFLGS----ID----SRMFENLD--- 347 (455)
T ss_dssp -E----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCT-TCCEEECCSSCCCE----EC----GGGGTTCT---
T ss_pred -c----cchhhcccCCCCCEEECCCCcccccChh----HhcCcc-cCCEEECCCCccCC----cC----hhHhcCcc---
Confidence 1 1233456678888888888888754322 223344 88888888888876 11 12443333
Q ss_pred CcceeehH--HHH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 354 SLRLLNLS--HIA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 354 ~L~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|++|+|+ .+. .++.. -.+|+.|+|++|.++..... ++..-++|++|+|++|+++
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLG--LPNLKELALDTNQLKSVPDG----IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCcccccChhhccc--cccccEEECCCCccccCCHh----HhccCCcccEEEccCCCcc
Confidence 48899885 222 22333 57899999999999875432 3455688999999999874
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.72 E-value=5.3e-08 Score=92.18 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=86.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhc-CCcccEEEccCCCC
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHL 301 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lss-n~sL~~L~Ls~N~L 301 (414)
+.++|++|+|++|.+.......+. . ..--.+++|.+....+ + ..+..+...-.. ..+|++|+|++|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~---~---~~l~~L~~L~Ls~N~l-~----~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL---E---ATGPDLNILNLRNVSW-A----TRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS---S---CCSCCCSEEEEESCBC-S----SSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred CcCCccEEEccCCcccchhHHHHH---H---hcCCCccEEEccCCCC-c----chhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 446899999999977542221110 0 0113467777777766 4 122233332111 26788888888877
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH------Hhhc-cccCC
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI------AASL-GKFFG 372 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l------~~ag-vk~L~ 372 (414)
..... ..+...+ +|++|+|++|.+++... ....+ ....+.+|++|+|+ .+ .... .. -
T Consensus 162 ~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~------~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--l 227 (312)
T 1wwl_A 162 LNFSC----EQVRVFP-ALSTLDLSDNPELGERG------LISAL-CPLKFPTLQVLALRNAGMETPSGVCSALAAA--R 227 (312)
T ss_dssp CCCCT----TTCCCCS-SCCEEECCSCTTCHHHH------HHHHS-CTTSCTTCCEEECTTSCCCCHHHHHHHHHHT--T
T ss_pred ccchH----HHhccCC-CCCEEECCCCCcCcchH------HHHHH-HhccCCCCCEEECCCCcCcchHHHHHHHHhc--C
Confidence 55332 2333444 78888888887664100 00111 00223447777774 11 1111 11 3
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+|+.|+|++|.++..+.. .....-++|++|++++|+|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTSCCS
T ss_pred CCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCCccC
Confidence 5778888888877764410 01112367888888888764
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.70 E-value=1.6e-08 Score=106.70 Aligned_cols=145 Identities=21% Similarity=0.178 Sum_probs=105.7
Q ss_pred hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (414)
Q Consensus 221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~ 300 (414)
+.++++|++|+|++|.+....- +.. -..++.|.+..+.+ + .. ..+...++|+.|+|++|.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l-~----~l-----~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP------LTN----LKNLGWLFLDENKI-K----DL-----SSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCC-C----CC-----TTSTTCTTCCEEECTTSC
T ss_pred HccCCCCCEEEeeCCCCCCChh------hcc----CCCCCEEECcCCCC-C----CC-----hhhccCCCCCEEEecCCC
Confidence 3455789999999998865322 111 13478888888887 4 11 146778999999999999
Q ss_pred CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCcee
Q 015056 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQ 376 (414)
Q Consensus 301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq 376 (414)
+.+- ..+...+ +|++|+|++|.|++ . ..+.... +|++|+|+ .+.+ .+.. -.+|+
T Consensus 121 l~~l------~~l~~l~-~L~~L~Ls~N~l~~----l------~~l~~l~---~L~~L~Ls~N~l~~~~~l~~--l~~L~ 178 (605)
T 1m9s_A 121 ISDI------NGLVHLP-QLESLYLGNNKITD----I------TVLSRLT---KLDTLSLEDNQISDIVPLAG--LTKLQ 178 (605)
T ss_dssp CCCC------GGGGGCT-TCSEEECCSSCCCC----C------GGGGSCT---TCSEEECCSSCCCCCGGGTT--CTTCC
T ss_pred CCCC------ccccCCC-ccCEEECCCCccCC----c------hhhcccC---CCCEEECcCCcCCCchhhcc--CCCCC
Confidence 9873 4566777 99999999999998 2 2444334 49999995 2211 1334 57899
Q ss_pred EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.|+|++|.|++. ..+..-++|++|+|++|+|
T Consensus 179 ~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 179 NLYLSKNHISDL------RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCBC------GGGTTCTTCSEEECCSEEE
T ss_pred EEECcCCCCCCC------hHHccCCCCCEEEccCCcC
Confidence 999999999985 3477789999999999976
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.70 E-value=4.7e-08 Score=99.45 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecccccc
Q 015056 219 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (414)
Q Consensus 219 ~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~ 269 (414)
.+... ++|++|+|.++.++...+..+...+..+. +++|.+..+.+
T Consensus 244 ~l~~l-~~L~~L~L~~~~l~~~~~~~~~~~~~~~~-----L~~L~l~~n~l 288 (562)
T 3a79_B 244 ELTRG-PTLLNVTLQHIETTWKCSVKLFQFFWPRP-----VEYLNIYNLTI 288 (562)
T ss_dssp HHHSC-SSCEEEEEEEEEECHHHHHHHHHHHTTSS-----EEEEEEEEEEE
T ss_pred HHhcc-CcceEEEecCCcCcHHHHHHHHHhhhccc-----ccEEEEeccEe
Confidence 44444 47777777777777777776666554433 66666665554
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.69 E-value=1.2e-08 Score=94.60 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=104.7
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
+|++|.|++. .+.... .-..+.++|++|+|++|. +....... +. .--.+++|.+..+.+ +.-
T Consensus 57 ~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~----~l~~L~~L~l~~n~l-~~~-- 120 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDA-----AAFTGLALLEQLDLSDNAQLRSVDPAT----FH----GLGRLHTLHLDRCGL-QEL-- 120 (285)
T ss_dssp TCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSCTTCCCCCTTT----TT----TCTTCCEEECTTSCC-CCC--
T ss_pred CCCEEECCCCccceeCH-----hhcCCccCCCEEeCCCCCCccccCHHH----hc----CCcCCCEEECCCCcC-CEE--
Confidence 6666666654 221110 112344578888888885 44321111 00 012477777777776 411
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
....+....+|++|+|++|++..-... .+...+ +|++|+|++|.|++ ..- .++... .+|
T Consensus 121 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L 179 (285)
T 1ozn_A 121 -----GPGLFRGLAALQYLYLQDNALQALPDD----TFRDLG-NLTHLFLHGNRISS----VPE----RAFRGL---HSL 179 (285)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCT-TCCEEECCSSCCCE----ECT----TTTTTC---TTC
T ss_pred -----CHhHhhCCcCCCEEECCCCcccccCHh----HhccCC-CccEEECCCCcccc----cCH----HHhcCc---ccc
Confidence 123456678888888888888653321 233344 78888888888886 211 133333 348
Q ss_pred ceeehH--HHH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 356 RLLNLS--HIA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 356 ~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++|+|+ .+. .++.. -.+|+.|+|++|.++..... ++..-++|++|++++|.+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCSSCE
T ss_pred CEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHH----HcccCcccCEEeccCCCc
Confidence 899885 222 22333 56899999999999986543 445668899999999976
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.68 E-value=4.8e-08 Score=97.32 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=52.4
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H 362 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~ 362 (414)
+....+|+.|+|++|++.+... +...+ +|++|+|++|.|++. . .+. ++.+|++|+|+ .
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~------~~~l~-~L~~L~L~~n~l~~~------~----~~~---~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP------LAGLT-ALTNLELNENQLEDI------S----PIS---NLKNLTYLTLYFNN 320 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG------GTTCT-TCSEEECCSSCCSCC------G----GGG---GCTTCSEEECCSSC
T ss_pred hhcCCCCCEEECCCCccCcccc------ccCCC-ccCeEEcCCCcccCc------h----hhc---CCCCCCEEECcCCc
Confidence 4445555666666665554332 22333 566666666665551 0 122 23346667663 1
Q ss_pred HHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 363 IAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 363 l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+.+ .... -.+|++|++++|.+++. ..+..-++|++|++++|+|
T Consensus 321 l~~~~~~~~--l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 321 ISDISPVSS--LTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSCCGGGGG--CTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCC
T ss_pred CCCchhhcc--CccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCcc
Confidence 111 1222 45667777777776664 2344556677777777765
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.68 E-value=7.6e-09 Score=95.50 Aligned_cols=179 Identities=17% Similarity=0.096 Sum_probs=109.1
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
-+|+.|.|++. .+... ....++.++|++|+|++|.+.......+ . .--.++.|.+..+.+ +.-+.
T Consensus 52 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~l~~n~l-~~~~~ 117 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAF----S----GLSSLQKLVAVETNL-ASLEN 117 (276)
T ss_dssp TTCSEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTTT----T----TCTTCCEEECTTSCC-CCSTT
T ss_pred cCCcEEECCCCcCCccC-----HHHccCCcCCCEEECCCCccCccChhhh----c----CCccccEEECCCCCc-cccCc
Confidence 36777777665 22111 0112445689999999998765332211 1 113577888877776 31111
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
..+...++|++|+|++|.+...... ..+...+ +|++|+|++|.|++ .... ++....++..|
T Consensus 118 -------~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~-~L~~L~Ls~N~l~~----~~~~----~~~~l~~L~~l 178 (276)
T 2z62_A 118 -------FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLT-NLEHLDLSSNKIQS----IYCT----DLRVLHQMPLL 178 (276)
T ss_dssp -------CCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCT-TCCEEECCSSCCCE----ECGG----GGHHHHTCTTC
T ss_pred -------hhcccCCCCCEEECcCCccceecCc---hhhccCC-CCCEEECCCCCCCc----CCHH----Hhhhhhhcccc
Confidence 1256678999999999998753211 1334445 89999999999997 3232 23222332223
Q ss_pred c-eeehH--HH---HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 356 R-LLNLS--HI---AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 356 ~-~LnLs--~l---~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
. +|+|+ .+ ...... ..+|+.|+|++|.++.... .++...++|++|++++|.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCT----TTTTTCCSCCEEECCSSCBC
T ss_pred ceeeecCCCcccccCccccC--CCcccEEECCCCceeecCH----hHhcccccccEEEccCCccc
Confidence 3 66664 22 111222 4589999999999997543 34566789999999999874
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.67 E-value=1.4e-08 Score=94.16 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=100.3
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~ 300 (414)
.+.++|++|+|++|.+...... ++.. --.+++|.+..+. + +. .. ...+....+|+.|+|++|.
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~----~~~~----l~~L~~L~l~~n~~l-~~----~~---~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAA----AFTG----LALLEQLDLSDNAQL-RS----VD---PATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTT----TTTT----CTTCCEEECCSCTTC-CC----CC---TTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCccceeCHh----hcCC----ccCCCEEeCCCCCCc-cc----cC---HHHhcCCcCCCEEECCCCc
Confidence 4556899999999987653221 1111 1247788888775 4 31 10 2345667899999999998
Q ss_pred CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCc
Q 015056 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTS 374 (414)
Q Consensus 301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~ 374 (414)
+..-.. ..+...+ +|++|+|++|.|++ ..- .++.... +|++|+|+ .+.. ++.+ -.+
T Consensus 117 l~~~~~----~~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~--l~~ 178 (285)
T 1ozn_A 117 LQELGP----GLFRGLA-ALQYLYLQDNALQA----LPD----DTFRDLG---NLTHLFLHGNRISSVPERAFRG--LHS 178 (285)
T ss_dssp CCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCEECTTTTTT--CTT
T ss_pred CCEECH----hHhhCCc-CCCEEECCCCcccc----cCH----hHhccCC---CccEEECCCCcccccCHHHhcC--ccc
Confidence 875432 2234445 89999999999987 211 2343333 48888885 2221 2233 468
Q ss_pred eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+.|+|++|.++..... ++...++|++|++++|+|+
T Consensus 179 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCS
T ss_pred cCEEECCCCcccccCHh----HccCcccccEeeCCCCcCC
Confidence 89999999998876533 3455678999999999874
No 42
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=1.4e-08 Score=94.73 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=92.3
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|++++|.+..-. .+.. -.+++.|.+..+.+ + ..+. +...++|+.|+|++|++.+-
T Consensus 41 ~~L~~L~l~~n~i~~l~------~l~~----l~~L~~L~L~~N~i-~----~~~~-----l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA------GMQF----FTNLKELHLSHNQI-S----DLSP-----LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp TTCSEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCC-C----CCGG-----GTTCSSCCEEECCSSCCSCC
T ss_pred CcCcEEECcCCCcccch------HHhh----CCCCCEEECCCCcc-C----CChh-----hccCCCCCEEECCCCccCCc
Confidence 57777777777665421 1111 12466777776666 4 1221 66778899999999988763
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeEEEe
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQVLNI 380 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~L~L 380 (414)
. .+.. -.|++|+|++|.|++ . ..+... .+|++|+|+ .+. ..+.. -.+|+.|+|
T Consensus 101 ~------~~~~--~~L~~L~L~~N~l~~----~------~~l~~l---~~L~~L~Ls~N~i~~~~~l~~--l~~L~~L~L 157 (263)
T 1xeu_A 101 N------GIPS--ACLSRLFLDNNELRD----T------DSLIHL---KNLEILSIRNNKLKSIVMLGF--LSKLEVLDL 157 (263)
T ss_dssp T------TCCC--SSCCEEECCSSCCSB----S------GGGTTC---TTCCEEECTTSCCCBCGGGGG--CTTCCEEEC
T ss_pred C------cccc--CcccEEEccCCccCC----C------hhhcCc---ccccEEECCCCcCCCChHHcc--CCCCCEEEC
Confidence 2 2222 488899999998887 1 123333 348888885 111 23444 578899999
Q ss_pred ecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++|.+++. ..+...++|+.|++++|.+
T Consensus 158 ~~N~i~~~------~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 158 HGNEITNT------GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSCCCBC------TTSTTCCCCCEEEEEEEEE
T ss_pred CCCcCcch------HHhccCCCCCEEeCCCCcc
Confidence 99999887 4567778899999988875
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.66 E-value=1.1e-08 Score=104.02 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=19.7
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCCh
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSP 239 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~ 239 (414)
+|+.|.|++. .+.... ..+.++|++|+|++|.+..
T Consensus 59 ~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp TCCEEECTTSCCEEEEE-------CTTCTTCCEEECCSSEEEE
T ss_pred CCCEEEeeCCCCCCCcc-------cccCCCCCEEEecCCcCCC
Confidence 5666666655 221110 3444577777777776643
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=2.1e-08 Score=91.92 Aligned_cols=17 Identities=18% Similarity=0.086 Sum_probs=11.0
Q ss_pred CCCCCcEEEcccCCCCh
Q 015056 223 NSETLASLEFLHCKLSP 239 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~ 239 (414)
+.++|++|+|++|.+..
T Consensus 57 ~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp TCTTCCEEECTTSCCCC
T ss_pred CcccCCEEECCCCcCCc
Confidence 44577777777776543
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.65 E-value=2.5e-08 Score=94.66 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=56.5
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhh
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAAS 366 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~a 366 (414)
.+|+.|+|++|.+...... ..+ +|++|+|++|.|++ ... .++.. +.+|++|+|+ .+.+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~~-------~~~-~L~~L~l~~N~l~~----~~~----~~~~~---l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS-------RGQ-GKKNIYLANNKITM----LRD----LDEGC---RSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC-------CCS-SCEEEECCSSCCCS----GGG----BCTGG---GSSEEEEECTTSCCCEE
T ss_pred CCcCEEECCCCccCCcCcc-------ccC-CCCEEECCCCCCCC----ccc----hhhhc---cCCCCEEECCCCCCCcc
Confidence 5666666666666543321 112 56777777777765 111 12322 2347778774 22211
Q ss_pred ccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 367 LGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 367 gvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
....+ -.+|+.|+|++|.++.... ...-++|++|++++|+|+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc------ccccccCCEEECCCCcCC
Confidence 11111 2578888888888876521 123577888888888774
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.65 E-value=3.2e-08 Score=99.18 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=83.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~ 302 (414)
+.++|++|+|++|.+........-..-.- -.++.|.+..+.+ + ..+ .....+....+|+.|+|++|++.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l-~----~~~-~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAW-----PSLQTLVLSQNHL-R----SMQ-KTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSS-----TTCCEEECTTSCC-C----CHH-HHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhcc-----ccCcEEEccCCcc-c----ccc-cchhhhhcCCCCCEEECCCCCCc
Confidence 34577777777777765433211000011 1366666766665 3 111 12244666677777777777665
Q ss_pred chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhh--hhcC------cccCCcceeehH-----HHHhhccc
Q 015056 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS--LGAG------KSLQSLRLLNLS-----HIAASLGK 369 (414)
Q Consensus 303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~a--L~~n------ks~~~L~~LnLs-----~l~~agvk 369 (414)
.- -..+...+ +|++|+|++|.|++.-... -..+ .. |..| .++.+|++|+|+ .+-+ .+.
T Consensus 401 ~l-----p~~~~~~~-~L~~L~Ls~N~l~~l~~~~-~~~L-~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~ 471 (549)
T 2z81_A 401 PM-----PDSCQWPE-KMRFLNLSSTGIRVVKTCI-PQTL-EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASL 471 (549)
T ss_dssp CC-----CSCCCCCT-TCCEEECTTSCCSCCCTTS-CTTC-SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGG
T ss_pred cC-----Chhhcccc-cccEEECCCCCcccccchh-cCCc-eEEECCCCChhhhcccCChhcEEECCCCccCcCCC-ccc
Confidence 21 11222233 5666666666655300000 0000 00 0000 123457777774 2211 122
Q ss_pred cCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 370 ~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
-.+|+.|+|++|.++... ...+..-++|++|++++|++
T Consensus 472 --l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 472 --FPVLLVMKISRNQLKSVP----DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp --CTTCCEEECCSSCCCCCC----TTGGGGCTTCCEEECCSSCB
T ss_pred --CccCCEEecCCCccCCcC----HHHHhcCcccCEEEecCCCc
Confidence 467888888888887532 22355667888888888875
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.65 E-value=2.9e-08 Score=92.15 Aligned_cols=154 Identities=17% Similarity=0.083 Sum_probs=101.2
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+.... .+..- -.++.|.+..+.+ +. .+ ..++....+|+.|+|++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~------~l~~l----~~L~~L~L~~n~l-~~----~~---~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS------ALKEL----TNLTYLILTGNQL-QS----LP---NGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG------GGTTC----TTCCEEECTTSCC-CC----CC---TTTTTTCTTCCEEECTTSCC
T ss_pred ccCCCCcEEECCCCCCCCch------hhcCC----CCCCEEECCCCcc-Cc----cC---hhHhcCCcCCCEEECCCCcC
Confidence 44568999999999886521 22221 2488888888877 41 11 22356678999999999998
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~ 377 (414)
..-... .+...+ +|++|+|++|.|++ ..- ..+... .+|++|+|+ .+.+.....+ -.+|+.
T Consensus 122 ~~~~~~----~~~~l~-~L~~L~L~~n~l~~----~~~----~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 122 QSLPDG----VFDKLT-NLTYLNLAHNQLQS----LPK----GVFDKL---TNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp CCCCTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCHH----HhccCC-CCCEEECCCCccCc----cCH----HHhccC---ccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 643221 123334 89999999999987 222 133333 348899995 2222111111 478999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|+|++|.++.... .++...++|++|++++|.+
T Consensus 186 L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCSCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCH----HHHhCCcCCCEEEccCCCc
Confidence 9999999986443 3456678999999999976
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.63 E-value=1.1e-08 Score=95.67 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=93.2
Q ss_pred CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (414)
Q Consensus 224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d 303 (414)
.++|++|+|++|.+..- -..+. .--.+++|.+..+.+ +.-+. ...+....+|+.|+|++|.+..
T Consensus 77 ~~~L~~L~Ls~n~i~~l-----~~~~~----~l~~L~~L~l~~n~l-~~~~~------~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITM-----SSNFL----GLEQLEHLDFQHSNL-KQMSE------FSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CSCCCEEECCSCSEEEE-----EEEEE----TCTTCCEEECTTSEE-ESSTT------TTTTTTCTTCCEEECTTSCCEE
T ss_pred ccccCEEECCCCccccC-----hhhcC----CCCCCCEEECCCCcc-ccccc------chhhhhccCCCEEECCCCcCCc
Confidence 35778888877765421 01111 113467777776665 31100 1345667788888888888754
Q ss_pred hhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCceeE
Q 015056 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSVQV 377 (414)
Q Consensus 304 ~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~Lq~ 377 (414)
.... .+...+ +|++|+|++|.|++.. ....+.. +.+|++|+|+ .+. +++.. -.+|++
T Consensus 141 ~~~~----~~~~l~-~L~~L~l~~n~l~~~~-------~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~ 203 (306)
T 2z66_A 141 AFNG----IFNGLS-SLEVLKMAGNSFQENF-------LPDIFTE---LRNLTFLDLSQCQLEQLSPTAFNS--LSSLQV 203 (306)
T ss_dssp CSTT----TTTTCT-TCCEEECTTCEEGGGE-------ECSCCTT---CTTCCEEECTTSCCCEECTTTTTT--CTTCCE
T ss_pred cchh----hcccCc-CCCEEECCCCcccccc-------chhHHhh---CcCCCEEECCCCCcCCcCHHHhcC--CCCCCE
Confidence 3322 123334 7888888888887510 1123323 3448899985 222 22333 478999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+|++|.+++..... +...++|++||+++|+|.
T Consensus 204 L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 204 LNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp EECTTSCCSBCCSGG----GTTCTTCCEEECTTSCCC
T ss_pred EECCCCccCccChhh----ccCcccCCEeECCCCCCc
Confidence 999999998755432 456688999999999874
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.62 E-value=5.7e-08 Score=92.94 Aligned_cols=43 Identities=2% Similarity=0.105 Sum_probs=33.0
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
...++.++|+.+.+++.+...+...+...++|++||+++|+|+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 3445666666666777777788888888889999999999874
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=1.3e-07 Score=94.27 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=24.1
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
-.+|+.|+|++|.+++... +..-++|++|++++|.|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccC
Confidence 4567777777777766542 445567777777777653
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.61 E-value=1.1e-07 Score=89.89 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~ 302 (414)
+.++|++|+|++|.+..-.. ..--++++|.+..+.+ + .. ....+....+|+.|+|++|.+.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~-----------~~~~~L~~L~l~~n~l-~----~~---~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPE-----------KMPKTLQELRVHENEI-T----KV---RKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCS-----------SCCTTCCEEECCSSCC-C----BB---CHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCccCh-----------hhcccccEEECCCCcc-c----cc---CHhHhcCCccccEEECCCCcCC
Confidence 44567777777776642110 0012466666666655 3 11 1234555666777777777665
Q ss_pred chhHHHHHHHhccCCCCccEEeccCCCCCCccccc----------CCC---ChhhhhhcCcccCCcceeehH--HHHh--
Q 015056 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY----------DRS---GPLFSLGAGKSLQSLRLLNLS--HIAA-- 365 (414)
Q Consensus 303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~----------~c~---~ls~aL~~nks~~~L~~LnLs--~l~~-- 365 (414)
..+... ..+...+ +|++|+|++|.|++.-... .+. ....++.. +.+|++|+|+ .+.+
T Consensus 159 ~~~~~~--~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 159 SSGIEN--GAFQGMK-KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG---LNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp GGGBCT--TGGGGCT-TCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTT---CTTCCEEECCSSCCCEEC
T ss_pred ccCcCh--hhccCCC-CcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcC---CCCCCEEECCCCcCceeC
Confidence 432211 1222223 4555555555554300000 000 00123322 3347777774 2211
Q ss_pred --hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 366 --SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 366 --agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++.. -.+|++|+|++|.++. +...+...++|++|++++|+|+
T Consensus 233 ~~~~~~--l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 233 NGSLAN--TPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TTTGGG--STTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCC
T ss_pred hhhccC--CCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCC
Confidence 2223 4577888888888773 3334566778888888888774
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.60 E-value=9.7e-08 Score=97.15 Aligned_cols=44 Identities=34% Similarity=0.274 Sum_probs=21.6
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
....+|+.|+|++|++..-. .+...+...+ +|++|+|++|.|++
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~-~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFF--KVALMTKNMS-SLETLDVSLNSLNS 417 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTT--HHHHTTTTCT-TCCEEECTTSCCBS
T ss_pred cccCCCCEEECCCCCcCCcc--cchhhhcCCC-CCCEEECCCCcCCC
Confidence 44455666666666654311 1112233333 56666666666654
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.59 E-value=1.1e-07 Score=100.31 Aligned_cols=141 Identities=19% Similarity=0.173 Sum_probs=105.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|++++|.+..-. .+..- -+++.|.+..+.+ + ..+. +...++|+.|+|++|.+.+-
T Consensus 43 ~~L~~L~l~~n~i~~l~------~l~~l----~~L~~L~Ls~N~l-~----~~~~-----l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ------GIQYL----PNVTKLFLNGNKL-T----DIKP-----LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp TTCCCCBCTTCCCCCCT------TGGGC----TTCCEEECTTSCC-C----CCGG-----GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCEEECcCCCCCCCh------HHccC----CCCCEEEeeCCCC-C----CChh-----hccCCCCCEEECcCCCCCCC
Confidence 68999999999876531 12221 3488999998887 4 2222 78899999999999999872
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEE
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLN 379 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~ 379 (414)
..+...+ .|++|+|++|.|++ . ..+.. +.+|++|+|+ .+ ..+.. -.+|+.|+
T Consensus 103 ------~~l~~l~-~L~~L~Ls~N~l~~----l------~~l~~---l~~L~~L~Ls~N~l~~l-~~l~~--l~~L~~L~ 159 (605)
T 1m9s_A 103 ------SSLKDLK-KLKSLSLEHNGISD----I------NGLVH---LPQLESLYLGNNKITDI-TVLSR--LTKLDTLS 159 (605)
T ss_dssp ------TTSTTCT-TCCEEECTTSCCCC----C------GGGGG---CTTCSEEECCSSCCCCC-GGGGS--CTTCSEEE
T ss_pred ------hhhccCC-CCCEEEecCCCCCC----C------ccccC---CCccCEEECCCCccCCc-hhhcc--cCCCCEEE
Confidence 2556666 99999999999998 2 23433 3459999995 22 33444 67899999
Q ss_pred eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|.+++... +..-++|++|+|++|+|+
T Consensus 160 Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 160 LEDNQISDIVP------LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CCSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCCchh------hccCCCCCEEECcCCCCC
Confidence 99999998643 667789999999999985
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.57 E-value=5.8e-08 Score=91.83 Aligned_cols=176 Identities=22% Similarity=0.210 Sum_probs=104.7
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|++|.++.. .+... .....+.++|++|++++|.+...++.. +++.. -..++.|.+..+.+ +.
T Consensus 122 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~----l~~L~~L~l~~n~l-~~---- 185 (330)
T 1xku_A 122 TLQELRVHENEITKVR-----KSVFNGLNQMIVVELGTNPLKSSGIEN--GAFQG----MKKLSYIRIADTNI-TT---- 185 (330)
T ss_dssp TCCEEECCSSCCCBBC-----HHHHTTCTTCCEEECCSSCCCGGGBCT--TGGGG----CTTCCEEECCSSCC-CS----
T ss_pred cccEEECCCCcccccC-----HhHhcCCccccEEECCCCcCCccCcCh--hhccC----CCCcCEEECCCCcc-cc----
Confidence 5666666654 22111 122345568888888888776533220 11111 13477777777766 42
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~ 356 (414)
.+..+ ..+|+.|+|++|++...... .+...+ +|++|+|++|.|++ ..- .++.... +|+
T Consensus 186 l~~~~------~~~L~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l~---~L~ 243 (330)
T 1xku_A 186 IPQGL------PPSLTELHLDGNKITKVDAA----SLKGLN-NLAKLGLSFNSISA----VDN----GSLANTP---HLR 243 (330)
T ss_dssp CCSSC------CTTCSEEECTTSCCCEECTG----GGTTCT-TCCEEECCSSCCCE----ECT----TTGGGST---TCC
T ss_pred CCccc------cccCCEEECCCCcCCccCHH----HhcCCC-CCCEEECCCCcCce----eCh----hhccCCC---CCC
Confidence 22111 26788888888888765332 233444 78888888888887 211 1333333 488
Q ss_pred eeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHH--hcCCCCcEEecCCCCC
Q 015056 357 LLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV--TKELKLVNINIRFKPI 413 (414)
Q Consensus 357 ~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL--~~N~~L~~LdLs~N~i 413 (414)
+|+|+ .+...+.. ..+|+.|+|++|.++..+..+++... ....+|+.|++++|.+
T Consensus 244 ~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 244 ELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EEECCSSCCSSCCTTTTT--CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EEECCCCcCccCChhhcc--CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 88884 33333333 57788888888888887766654332 2346788888888876
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=2.9e-08 Score=100.79 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=90.8
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|+.|.|++. .+.... .-..+.++|++|+|++|.+....- +.. --.++.|.+..+.+ + .
T Consensus 35 ~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l-~----~ 94 (487)
T 3oja_A 35 NVKELDLSGNPLSQISA-----ADLAPFTKLELLNLSSNVLYETLD------LES----LSTLRTLDLNNNYV-Q----E 94 (487)
T ss_dssp GCCEEECCSSCCCCCCG-----GGGTTCTTCCEEECTTSCCEEEEE------CTT----CTTCCEEECCSSEE-E----E
T ss_pred CccEEEeeCCcCCCCCH-----HHHhCCCCCCEEEeeCCCCCCCcc------ccc----CCCCCEEEecCCcC-C----C
Confidence 5666666665 221110 112344577777777776653210 111 12366666666665 3 1
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~ 356 (414)
.+ ...+|+.|+|++|.+..-... ..+ +|++|+|++|.|++ ..- .++.. +.+|+
T Consensus 95 l~--------~~~~L~~L~L~~N~l~~~~~~-------~l~-~L~~L~L~~N~l~~----~~~----~~~~~---l~~L~ 147 (487)
T 3oja_A 95 LL--------VGPSIETLHAANNNISRVSCS-------RGQ-GKKNIYLANNKITM----LRD----LDEGC---RSRVQ 147 (487)
T ss_dssp EE--------ECTTCCEEECCSSCCCCEEEC-------CCS-SCEEEECCSSCCCS----GGG----BCGGG---GSSEE
T ss_pred CC--------CCCCcCEEECcCCcCCCCCcc-------ccC-CCCEEECCCCCCCC----CCc----hhhcC---CCCCC
Confidence 11 226777777777777654321 112 67777777777776 111 13332 23488
Q ss_pred eeehH--HHHh----hcc-ccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 357 LLNLS--HIAA----SLG-KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 357 ~LnLs--~l~~----agv-k~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|+|+ .+.. ... . -.+|+.|+|++|.++... .+...++|++|+|++|+|+
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~--l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAAS--SDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGG--TTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCcChHHHhhh--CCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCC
Confidence 88885 2221 121 2 367888888888888752 1224678889999988874
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=2.6e-08 Score=94.31 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=96.0
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+..-... ..--.++.|.+....+ + .+...+....+|+.|+|++|++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~~----------~~l~~L~~L~Ls~N~l-~--------~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQVD----------GTLPVLGTLDLSHNQL-Q--------SLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEECC----------SCCTTCCEEECCSSCC-S--------SCCCCTTTCTTCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCccCcccCC----------CCCCcCCEEECCCCcC-C--------cCchhhccCCCCCEEECCCCcC
Confidence 4456899999999987653211 1123477788877776 4 1223446678899999999988
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~ 377 (414)
..-.. ..+...+ +|++|+|++|+|++ ..- .++.... +|++|+|+ .+..--...+ -.+|+.
T Consensus 113 ~~l~~----~~~~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l~---~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 113 TSLPL----GALRGLG-ELQELYLKGNELKT----LPP----GLLTPTP---KLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp CCCCS----STTTTCT-TCCEEECTTSCCCC----CCT----TTTTTCT---TCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred cccCH----HHHcCCC-CCCEEECCCCCCCc----cCh----hhccccc---CCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 64321 1123334 88999999999887 222 2333333 48888885 2221111111 467899
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|+|++|.++. +...+..+.+|++|+|++|.+
T Consensus 177 L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 177 LLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 9999999884 334455667899999999875
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.54 E-value=8.1e-08 Score=88.89 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=101.7
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+..-... .+. .--.++.|.+..+.+ +. .+ ..++....+|++|+|++|++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~----~~~----~l~~L~~L~l~~n~l-~~----~~---~~~~~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAG----IFK----ELKNLETLWVTDNKL-QA----LP---IGVFDQLVNLAELRLDRNQL 121 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTT----TTS----SCTTCCEEECCSSCC-CC----CC---TTTTTTCSSCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCccCeeChh----hhc----CCCCCCEEECCCCcC-Cc----CC---HhHcccccCCCEEECCCCcc
Confidence 4556899999999987532111 011 113578888887776 41 11 13456678999999999998
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~ 377 (414)
..-... .+...+ +|++|+|++|.|++ ..- .++... .+|++|+|+ .+..-....+ -.+|+.
T Consensus 122 ~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 122 KSLPPR----VFDSLT-KLTYLSLGYNELQS----LPK----GVFDKL---TSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp CCCCTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CeeCHH----HhCcCc-CCCEEECCCCcCCc----cCH----hHccCC---cccceeEecCCcCcEeChhHhccCCCcCE
Confidence 764432 133444 89999999999997 222 234333 348999995 2222111112 478999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|+|++|.++..... ++...++|++|+|++|.+
T Consensus 186 L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 186 LKLDNNQLKRVPEG----AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCcCCHH----HhccccCCCEEEecCCCe
Confidence 99999999865432 345568899999999986
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.52 E-value=1.6e-08 Score=97.22 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=47.2
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH-
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA- 364 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~- 364 (414)
..+|++|+|++|++..- -..+...+ +|++|+|++|.|++ +...+.... +|++|+|+ .+.
T Consensus 182 l~~L~~L~L~~n~l~~l-----p~~l~~l~-~L~~L~L~~N~l~~---------l~~~l~~l~---~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSL-----PASIANLQ-NLKSLKIRNSPLSA---------LGPAIHHLP---KLEELDLRGCTALR 243 (328)
T ss_dssp STTCCEEEEEEECCCCC-----CGGGGGCT-TCCEEEEESSCCCC---------CCGGGGGCT---TCCEEECTTCTTCC
T ss_pred CCCCCEEECcCCCcCcc-----hHhhcCCC-CCCEEEccCCCCCc---------CchhhccCC---CCCEEECcCCcchh
Confidence 45566666666665411 12233344 56666666666664 111232222 36666663 111
Q ss_pred ---hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ---ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ---~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
....+ -.+|+.|+|++|.+...-- ..+..-++|++|+|++|++
T Consensus 244 ~~p~~~~~--l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 244 NYPPIFGG--RAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp BCCCCTTC--CCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCTT
T ss_pred hhHHHhcC--CCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCCc
Confidence 11122 3456666666655443211 1233445566666666553
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.52 E-value=6e-08 Score=93.81 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=50.2
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--- 361 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--- 361 (414)
+...++|+.|+|++|++..... ..+...+ +|++|+|++|.|++.- ... ..+.+|++|+|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~---------~~~---~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMY----HPFVKMQ-RLERLYISNNRLVALN---------LYG---QPIPTLKVLDLSHNH 306 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEES----GGGTTCS-SCCEEECCSSCCCEEE---------CSS---SCCTTCCEEECCSSC
T ss_pred HcCCCCccEEECCCCcCCCcCh----hHccccc-cCCEEECCCCcCcccC---------ccc---CCCCCCCEEECCCCc
Confidence 4445555555555555543321 1222333 5555555555555410 011 122346666663
Q ss_pred --HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 --HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 --~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+...... -.+|+.|+|++|.+++.. +...++|++|++++|++
T Consensus 307 l~~~~~~~~~--l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 307 LLHVERNQPQ--FDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCCGGGHHH--HTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCE
T ss_pred ceecCccccc--cCcCCEEECCCCccceeC-------chhhccCCEEEcCCCCc
Confidence 12111222 355666667666666653 44556677777777764
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.52 E-value=1.4e-07 Score=87.33 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=103.2
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|+|++|.+..-... ++. .--.+++|.+..+.+ + ..+ ..++....+|+.|+|++|++..-
T Consensus 37 ~~l~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~l~~n~l-~----~i~---~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSK----AFH----RLTKLRLLYLNDNKL-Q----TLP---AGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTT----SSS----SCTTCCEEECCSSCC-S----CCC---TTTTSSCTTCCEEECCSSCCCCC
T ss_pred CCCCEEECcCCCCCeeCHH----Hhc----CCCCCCEEECCCCcc-C----eeC---hhhhcCCCCCCEEECCCCcCCcC
Confidence 4799999999988653211 111 113588888887776 4 122 23346678999999999999754
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCceeEE
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTSVQVL 378 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~Lq~L 378 (414)
... .+...+ +|++|+|++|.|++ ..- .++.. +.+|++|+|+ .+.. ++.+ -.+|+.|
T Consensus 101 ~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L 162 (270)
T 2o6q_A 101 PIG----VFDQLV-NLAELRLDRNQLKS----LPP----RVFDS---LTKLTYLSLGYNELQSLPKGVFDK--LTSLKEL 162 (270)
T ss_dssp CTT----TTTTCS-SCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTT--CTTCCEE
T ss_pred CHh----Hccccc-CCCEEECCCCccCe----eCH----HHhCc---CcCCCEEECCCCcCCccCHhHccC--Cccccee
Confidence 321 223344 89999999999997 222 23433 3459999995 2221 1233 5789999
Q ss_pred EeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 379 ~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|++|.++..... ++..-++|++|+|++|+|.
T Consensus 163 ~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 163 RLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp ECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCS
T ss_pred EecCCcCcEeChh----HhccCCCcCEEECCCCcCC
Confidence 9999999875543 3455689999999999874
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.51 E-value=8.6e-08 Score=88.39 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+....-. ++.. --.++.|.+..+.+ + ... ...+....+|+.|+|++|.+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~----~~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDG----AYQS----LSHLSTLILTGNPI-Q----SLA---LGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTT----TTTT----CTTCCEEECTTCCC-C----EEC---TTTTTTCTTCCEEECTTSCC
T ss_pred ccccCCcEEECCCCcCCccCHH----HccC----CcCCCEEECCCCcc-C----ccC---hhhhcCCccccEEECCCCCc
Confidence 4456888888888877542211 1111 12467777776665 3 111 13345567788888888877
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCce
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSV 375 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~L 375 (414)
..-... .+.+.+ +|++|+|++|.|++ -. +...+.... +|++|+|+ .+. .++.. -.++
T Consensus 113 ~~~~~~----~~~~l~-~L~~L~l~~n~l~~------~~-l~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~~~--l~~L 175 (276)
T 2z62_A 113 ASLENF----PIGHLK-TLKELNVAHNLIQS------FK-LPEYFSNLT---NLEHLDLSSNKIQSIYCTDLRV--LHQM 175 (276)
T ss_dssp CCSTTC----CCTTCT-TCCEEECCSSCCCC------CC-CCGGGGGCT---TCCEEECCSSCCCEECGGGGHH--HHTC
T ss_pred cccCch----hcccCC-CCCEEECcCCccce------ec-CchhhccCC---CCCEEECCCCCCCcCCHHHhhh--hhhc
Confidence 553221 133334 78888888888776 11 113443333 37777774 111 11111 1223
Q ss_pred e----EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 376 Q----VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 376 q----~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+ +|++++|.++..... .....+|++|++++|.|+
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLK 213 (276)
T ss_dssp TTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCS
T ss_pred cccceeeecCCCcccccCcc-----ccCCCcccEEECCCCcee
Confidence 3 778888887764422 223447999999999874
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.50 E-value=1.3e-08 Score=96.59 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=59.8
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH----
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---- 361 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---- 361 (414)
....+|+.|+|++|++.+.....+.. ..+ .|++|+|++|.|++ . . .. ..+.+|++|+|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~---~l~-~L~~L~L~~N~l~~----~--~----~~---~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAA---SSD-TLEHLNLQYNFIYD----V--K----GQ---VVFAKLKTLDLSSNKL 203 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGG---GTT-TCCEEECTTSCCCE----E--E----CC---CCCTTCCEEECCSSCC
T ss_pred hccCCCCEEECCCCCCCcccHHHHhh---ccC-cCCEEECCCCcCcc----c--c----cc---cccccCCEEECCCCcC
Confidence 44566777777777776543322211 123 67777777777766 1 0 01 113347777774
Q ss_pred -HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 -HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 -~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+...... -.+|+.|+|++|.++. +...+...++|++|++++|.+
T Consensus 204 ~~l~~~~~~--l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 204 AFMGPEFQS--AAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CEECGGGGG--GTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred Ccchhhhcc--cCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCc
Confidence 22222223 4677888888888774 233455667788888888876
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.49 E-value=2.8e-07 Score=81.60 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=78.1
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H 362 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~ 362 (414)
+....+|+.|+|++|.+.+-. .+...+ .|++|+|++|.|++ ..- ..+.. +.+|++|+|+ .
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~------~l~~l~-~L~~L~l~~n~l~~----~~~----~~l~~---l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN------PISGLS-NLERLRIMGKDVTS----DKI----PNLSG---LTSLTLLDISHSA 123 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG------GGTTCT-TCCEEEEECTTCBG----GGS----CCCTT---CTTCCEEECCSSB
T ss_pred HhcCCCCCEEEccCCCCCcch------hhhcCC-CCCEEEeECCccCc----ccC----hhhcC---CCCCCEEEecCCc
Confidence 345678999999999886542 456666 99999999999996 111 23333 3459999995 2
Q ss_pred ----HHhhccccCCCceeEEEeeccc-CCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 363 ----IAASLGKFFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 363 ----l~~agvk~L~c~Lq~L~L~~c~-lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
....+.+ -.+|+.|+|++|. +++.- .+..-++|++|++++|.|+
T Consensus 124 i~~~~~~~l~~--l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 124 HDDSILTKINT--LPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CBGGGHHHHTT--CSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCC
T ss_pred cCcHhHHHHhh--CCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCc
Confidence 3344445 6889999999998 88862 5778899999999999874
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.49 E-value=1.9e-07 Score=93.75 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=101.4
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
+++++|+|++|.+..-.-. ++. .=-++|.|.+..+.+ + .++ ..++....+|++|+|++|++..-
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~----~l~~L~~L~Ls~N~i-~----~i~---~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFF----SFPELQVLDLSRCEI-Q----TIE---DGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTT----TCTTCCEEECTTCCC-C----EEC---TTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCEEEeeCCCCCCCCHH----HHh----CCCCCCEEECCCCcC-C----CcC---hhHhcCCCCCCEEEccCCcCCCC
Confidence 4788888888887542110 000 012477888887776 4 222 12456778999999999998653
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH-----HhhccccCCCceeE
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI-----AASLGKFFGTSVQV 377 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l-----~~agvk~L~c~Lq~ 377 (414)
... ++...+ +|++|+|++|.|++ ..- .++.... +|++|+|+ .+ ...... -.+|+.
T Consensus 116 ~~~----~f~~L~-~L~~L~Ls~N~l~~----l~~----~~~~~L~---~L~~L~Ls~N~l~~~~~~~~~~~--l~~L~~ 177 (635)
T 4g8a_A 116 ALG----AFSGLS-SLQKLVAVETNLAS----LEN----FPIGHLK---TLKELNVAHNLIQSFKLPEYFSN--LTNLEH 177 (635)
T ss_dssp CGG----GGTTCT-TCCEEECTTSCCCC----STT----CCCTTCT---TCCEEECCSSCCCCCCCCGGGGG--CTTCCE
T ss_pred CHH----HhcCCC-CCCEEECCCCcCCC----CCh----hhhhcCc---ccCeeccccCccccCCCchhhcc--chhhhh
Confidence 221 233445 89999999999997 222 2443334 49999995 22 222333 478999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+|++|.++.....+++..-.....+..++++.|.|+
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 9999999988766666554444455678888888763
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.48 E-value=2e-07 Score=86.55 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=102.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|++++|.+.... .+..- -+++.|.+..+.+ + . + ..+....+|++|+|++|.+..-
T Consensus 41 ~~L~~L~l~~~~i~~~~------~l~~l----~~L~~L~l~~n~l-~----~----~-~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ------GIQYL----PNVRYLALGGNKL-H----D----I-SALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp TTCCEEECTTSCCCCCT------TGGGC----TTCCEEECTTSCC-C----C----C-GGGTTCTTCCEEECTTSCCCCC
T ss_pred cceeeeeeCCCCccccc------ccccC----CCCcEEECCCCCC-C----C----c-hhhcCCCCCCEEECCCCccCcc
Confidence 68999999999876422 12111 2488899988887 4 1 1 2567889999999999999753
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEe
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNI 380 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L 380 (414)
... .+...+ +|++|+|++|.|++ ..- ..+.... +|++|+|+ .+.......+ -.+|+.|+|
T Consensus 101 ~~~----~~~~l~-~L~~L~L~~n~l~~----~~~----~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 101 PNG----VFDKLT-NLKELVLVENQLQS----LPD----GVFDKLT---NLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CTT----TTTTCT-TCCEEECTTSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred Chh----HhcCCc-CCCEEECCCCcCCc----cCH----HHhccCC---CCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 321 133344 89999999999997 212 2333333 49999995 2222111111 578999999
Q ss_pred ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|.++.... .++..-++|++|++++|+|+
T Consensus 165 ~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 165 SYNQLQSLPE----GVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCccCH----HHhcCCccCCEEECCCCcCC
Confidence 9999996543 23455689999999999874
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.48 E-value=7.3e-08 Score=91.40 Aligned_cols=156 Identities=22% Similarity=0.158 Sum_probs=88.4
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|++++|.+...++. ........++.+.+..+.+ +. .+..+ ..+|+.|+|++|++
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~-------~~~~~~l~L~~L~l~~n~l-~~----l~~~~------~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFE-------PGAFDGLKLNYLRISEAKL-TG----IPKDL------PETLNELHLDHNKI 205 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSC-------TTSSCSCCCSCCBCCSSBC-SS----CCSSS------CSSCSCCBCCSSCC
T ss_pred CCCccCCEEECCCCccccCCCC-------cccccCCccCEEECcCCCC-Cc----cCccc------cCCCCEEECCCCcC
Confidence 4556888888888877543221 0011112566777776665 42 22111 15778888888877
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCcee
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQ 376 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq 376 (414)
...... .+...+ +|++|+|++|.|++ ..- .++.... +|++|+|+ .+...+.. -.+|+
T Consensus 206 ~~~~~~----~l~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l~---~L~~L~L~~N~l~~lp~~l~~--l~~L~ 267 (332)
T 2ft3_A 206 QAIELE----DLLRYS-KLYRLGLGHNQIRM----IEN----GSLSFLP---TLRELHLDNNKLSRVPAGLPD--LKLLQ 267 (332)
T ss_dssp CCCCTT----SSTTCT-TCSCCBCCSSCCCC----CCT----TGGGGCT---TCCEEECCSSCCCBCCTTGGG--CTTCC
T ss_pred CccCHH----HhcCCC-CCCEEECCCCcCCc----CCh----hHhhCCC---CCCEEECCCCcCeecChhhhc--CccCC
Confidence 654321 233334 77888888888776 111 1333333 37777774 23222333 46677
Q ss_pred EEEeecccCCchhHHHHHHHHh--cCCCCcEEecCCCCC
Q 015056 377 VLNIGAIGLGSSGFRVLQDGVT--KELKLVNINIRFKPI 413 (414)
Q Consensus 377 ~L~L~~c~lg~~gcqaLa~aL~--~N~~L~~LdLs~N~i 413 (414)
.|+|++|.++..+..+++.... ....|++|++++|.+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 7777777777766655544322 245577777777765
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.48 E-value=5.3e-07 Score=90.34 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=8.0
Q ss_pred CccEEeccCCCCCC
Q 015056 319 SLSILDLSGNSIGG 332 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~ 332 (414)
+|++|||++|.|++
T Consensus 388 ~L~~L~Ls~N~l~~ 401 (549)
T 2z81_A 388 NLTSLDISRNTFHP 401 (549)
T ss_dssp TCCEEECTTCCCCC
T ss_pred CCCEEECCCCCCcc
Confidence 55555565555553
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.48 E-value=3.9e-08 Score=93.09 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=100.7
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|+|++|.+..-....+ .. --.++.|.+..+.+ + ..+.. ....+|+.|+|++|++..-
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~----~~----l~~L~~L~L~~n~l-~----~~~~~-----~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL----MP----YTRLTQLNLDRAEL-T----KLQVD-----GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG----TT----CTTCCEEECTTSCC-C----EEECC-----SCCTTCCEEECCSSCCSSC
T ss_pred CCCCEEEcCCCcCCccCHHHh----hc----CCCCCEEECCCCcc-C----cccCC-----CCCCcCCEEECCCCcCCcC
Confidence 478999999998865432211 11 13477888887776 4 12211 4678999999999999632
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEe
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNI 380 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L 380 (414)
. ..+...+ +|++|+|++|+|++ ..- .++.... +|++|+|+ .+..-....+ -.+|+.|+|
T Consensus 93 ~-----~~~~~l~-~L~~L~l~~N~l~~----l~~----~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 93 P-----LLGQTLP-ALTVLDVSFNRLTS----LPL----GALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp C-----CCTTTCT-TCCEEECCSSCCCC----CCS----STTTTCT---TCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred c-----hhhccCC-CCCEEECCCCcCcc----cCH----HHHcCCC---CCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 1 1233344 89999999999997 222 2443334 49999995 2222111112 578999999
Q ss_pred ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|.++.... .++..-++|++|++++|+|.
T Consensus 156 ~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 156 ANNNLTELPA----GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTSCCSCCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCH----HHhcCcCCCCEEECCCCcCC
Confidence 9999996432 33456689999999999874
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.47 E-value=1e-07 Score=92.22 Aligned_cols=121 Identities=21% Similarity=0.176 Sum_probs=84.7
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~ 337 (414)
.++.+.+..+.+ + ..+. ....+|+.|+|++|++.+. ..+...+ +|++|+|++|.|++ .
T Consensus 206 ~L~~L~l~~n~l-~----~~~~------~~~~~L~~L~l~~n~l~~~------~~l~~l~-~L~~L~Ls~n~l~~----~ 263 (390)
T 3o6n_A 206 AVEELDASHNSI-N----VVRG------PVNVELTILKLQHNNLTDT------AWLLNYP-GLVEVDLSYNELEK----I 263 (390)
T ss_dssp SCSEEECCSSCC-C----EEEC------CCCSSCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCE----E
T ss_pred cceEEECCCCee-e----eccc------cccccccEEECCCCCCccc------HHHcCCC-CccEEECCCCcCCC----c
Confidence 477777777766 4 1111 2247899999999999875 3566666 99999999999997 2
Q ss_pred CCCChhhhhhcCcccCCcceeehH--HH---HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 338 DRSGPLFSLGAGKSLQSLRLLNLS--HI---AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 338 ~c~~ls~aL~~nks~~~L~~LnLs--~l---~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
. ..++.... +|++|+|+ .+ ...... -.+|++|+|++|.++... ..+..-++|++|++++|+
T Consensus 264 ~----~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~--l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 264 M----YHPFVKMQ---RLERLYISNNRLVALNLYGQP--IPTLKVLDLSHNHLLHVE-----RNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp E----SGGGTTCS---SCCEEECCSSCCCEEECSSSC--CTTCCEEECCSSCCCCCG-----GGHHHHTTCSEEECCSSC
T ss_pred C----hhHccccc---cCCEEECCCCcCcccCcccCC--CCCCCEEECCCCcceecC-----ccccccCcCCEEECCCCc
Confidence 1 13444444 49999995 22 111222 478999999999998532 223445889999999999
Q ss_pred CC
Q 015056 413 IS 414 (414)
Q Consensus 413 i~ 414 (414)
|+
T Consensus 330 i~ 331 (390)
T 3o6n_A 330 IV 331 (390)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.47 E-value=4.8e-08 Score=91.20 Aligned_cols=176 Identities=20% Similarity=0.189 Sum_probs=109.6
Q ss_pred cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056 196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (414)
Q Consensus 196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~ 274 (414)
-.+|+.|.|++. .+.. ... ..+.++|++|++++|.+...... ..+.. --.++.|.+..+.+ +.
T Consensus 77 ~~~L~~L~Ls~n~i~~l-----~~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~~----l~~L~~L~l~~n~l-~~-- 140 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITM-----SSN-FLGLEQLEHLDFQHSNLKQMSEF---SVFLS----LRNLIYLDISHTHT-RV-- 140 (306)
T ss_dssp CSCCCEEECCSCSEEEE-----EEE-EETCTTCCEEECTTSEEESSTTT---TTTTT----CTTCCEEECTTSCC-EE--
T ss_pred ccccCEEECCCCccccC-----hhh-cCCCCCCCEEECCCCcccccccc---hhhhh----ccCCCEEECCCCcC-Cc--
Confidence 346777777665 2211 111 34456999999999987653220 01111 13477888887776 31
Q ss_pred cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
.....+....+|+.|+|++|.+.+.... ..+...+ +|++|+|++|.|++ ..- .++... .+
T Consensus 141 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l---~~ 200 (306)
T 2z66_A 141 -----AFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELR-NLTFLDLSQCQLEQ----LSP----TAFNSL---SS 200 (306)
T ss_dssp -----CSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCT-TCCEEECTTSCCCE----ECT----TTTTTC---TT
T ss_pred -----cchhhcccCcCCCEEECCCCccccccch---hHHhhCc-CCCEEECCCCCcCC----cCH----HHhcCC---CC
Confidence 1233456678999999999988652111 1233344 89999999999987 211 234333 34
Q ss_pred cceeehH--HHHh----hccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCC
Q 015056 355 LRLLNLS--HIAA----SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPI 413 (414)
Q Consensus 355 L~~LnLs--~l~~----agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i 413 (414)
|++|+|+ .+.+ .... -.+|+.|+|++|.++......+ ..- ++|++|++++|.+
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~----~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQEL----QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTT--CTTCCEEECTTSCCCBCSSSSC----CCCCTTCCEEECTTCCE
T ss_pred CCEEECCCCccCccChhhccC--cccCCEeECCCCCCcccCHHHH----HhhhccCCEEEccCCCe
Confidence 8999995 2222 2222 4789999999999987654332 333 4899999999986
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.44 E-value=1.6e-07 Score=89.11 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=87.2
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+..-.. ...-++++|.+..+.+ +. .+ ..++...++|+.|+|++|++
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~-----------~~~~~L~~L~l~~n~i-~~----~~---~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPP-----------NLPSSLVELRIHDNRI-RK----VP---KGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCS-----------SCCTTCCEEECCSSCC-CC----CC---SGGGSSCSSCCEEECCSCCC
T ss_pred hCcCCCCEEECCCCcCCccCc-----------cccccCCEEECCCCcc-Cc----cC---HhHhCCCccCCEEECCCCcc
Confidence 344577777777776652110 0013477777776665 31 11 12355677888888888887
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccC----------CC---ChhhhhhcCcccCCcceeehH--HHH--
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD----------RS---GPLFSLGAGKSLQSLRLLNLS--HIA-- 364 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~----------c~---~ls~aL~~nks~~~L~~LnLs--~l~-- 364 (414)
.+.+... ..+.. . .|++|++++|.|++.-.... +. ....++. .+.+|++|+|+ .+.
T Consensus 160 ~~~~~~~--~~~~~-l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 160 ENSGFEP--GAFDG-L-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp BGGGSCT--TSSCS-C-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST---TCTTCSCCBCCSSCCCCC
T ss_pred ccCCCCc--ccccC-C-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc---CCCCCCEEECCCCcCCcC
Confidence 5432211 11111 1 44455555554443000000 00 0001232 23458888884 222
Q ss_pred --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++... -.+|+.|+|++|.++. +...+...++|++|++++|+|+
T Consensus 233 ~~~~~~~--l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 233 ENGSLSF--LPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CTTGGGG--CTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCC
T ss_pred ChhHhhC--CCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCC
Confidence 12333 5789999999999984 3334677889999999999874
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.44 E-value=6.7e-08 Score=95.55 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=20.9
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+|+.|+|++|.++..... ++..-++|++|+|++|.+
T Consensus 255 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCCCCccChh----HhccccCCCEEEcCCCCc
Confidence 5566666666666653322 223345666666666653
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.44 E-value=2.2e-07 Score=85.05 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=104.0
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|+|++|.+....-.. +.. --++++|.+..+.+ +. . ....+....+|+.|+|++|++..-
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~----~~~----l~~L~~L~L~~n~l-~~----~---~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDAT----FRG----LTKLTWLNLDYNQL-QT----L---SAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTT----TTT----CTTCCEEECTTSCC-CC----C---CTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCEEEccCCCcCccCHhH----hcC----cccCCEEECCCCcC-Cc----c---CHhHhccCCcCCEEECCCCccccc
Confidence 47999999999886533221 111 13588888888877 41 1 123456678999999999999754
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCceeEE
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTSVQVL 378 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~Lq~L 378 (414)
... .+...+ +|++|+|++|.|++ ..- .++... .+|++|+|+ .+.. ++.+ -.+|+.|
T Consensus 99 ~~~----~~~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L 160 (251)
T 3m19_A 99 PLG----VFDHLT-QLDKLYLGGNQLKS----LPS----GVFDRL---TKLKELRLNTNQLQSIPAGAFDK--LTNLQTL 160 (251)
T ss_dssp CTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCCCTTTTTT--CTTCCEE
T ss_pred Chh----HhcccC-CCCEEEcCCCcCCC----cCh----hHhccC---CcccEEECcCCcCCccCHHHcCc--CcCCCEE
Confidence 322 223445 89999999999997 222 233333 349999995 2221 2333 4789999
Q ss_pred EeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 379 ~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|++|.++...- .++..-++|++|++++|.+.
T Consensus 161 ~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 161 SLSTNQLQSVPH----GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCSCCCT----TTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCH----HHHhCCCCCCEEEeeCCcee
Confidence 999999996543 34556689999999999873
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.43 E-value=1.2e-08 Score=97.04 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=110.4
Q ss_pred ccccceeeee-c-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056 197 SKLQSLVLRW-I-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (414)
Q Consensus 197 ckLq~L~L~~-~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~ 274 (414)
-+|+.|.|+. . .+..... . +.+.++|++|+|++|.+....-.. +.. --.+++|.+..+.+ +
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~----~-l~~l~~L~~L~Ls~n~l~~~~p~~----~~~----l~~L~~L~Ls~N~l-~--- 138 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP----A-IAKLTQLHYLYITHTNVSGAIPDF----LSQ----IKTLVTLDFSYNAL-S--- 138 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG----G-GGGCTTCSEEEEEEECCEEECCGG----GGG----CTTCCEEECCSSEE-E---
T ss_pred CCCCeeeCCCCCcccccCCh----h-HhcCCCCCEEECcCCeeCCcCCHH----HhC----CCCCCEEeCCCCcc-C---
Confidence 4788888873 2 2211111 1 245579999999999886322111 111 13478888888777 4
Q ss_pred cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
...+ ..+...++|++|+|++|++..... ..+...+-.|++|+|++|.|++-. - ..+... +
T Consensus 139 ~~~p----~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~~L~~L~L~~N~l~~~~----~----~~~~~l---~- 198 (313)
T 1ogq_A 139 GTLP----PSISSLPNLVGITFDGNRISGAIP----DSYGSFSKLFTSMTISRNRLTGKI----P----PTFANL---N- 198 (313)
T ss_dssp SCCC----GGGGGCTTCCEEECCSSCCEEECC----GGGGCCCTTCCEEECCSSEEEEEC----C----GGGGGC---C-
T ss_pred CcCC----hHHhcCCCCCeEECcCCcccCcCC----HHHhhhhhcCcEEECcCCeeeccC----C----hHHhCC---c-
Confidence 1222 345667899999999999863322 223333337999999999998611 1 233222 2
Q ss_pred cceeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 355 LRLLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 355 L~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|++|+|+ .+.+...+ -.+|+.|+|++|.++..... +...++|++|++++|+|+
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCE
T ss_pred ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCccc
Confidence 8899995 23334444 67899999999999743221 345688999999999873
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=93.11 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=54.2
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHH--
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH-- 362 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~-- 362 (414)
+....+|+.|+|++|++..-... .+.+.+ +|++|+|++|.|++ ..- .++. ++.+|++|+|+.
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~-~L~~L~l~~n~i~~----~~~----~~~~---~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTE----ALSHLH-GLIVLRLRHLNINA----IRD----YSFK---RLYRLKVLEISHWP 211 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHH----HHTTCT-TCCEEEEESCCCCE----ECT----TCSC---SCTTCCEEEEECCT
T ss_pred ccCCCCCCEEECCCCcCcccChh----HhcccC-CCcEEeCCCCcCcE----eCh----hhcc---cCcccceeeCCCCc
Confidence 34556677777777766553322 233344 67777777777765 111 1222 223466666631
Q ss_pred ----HHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 363 ----IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 363 ----l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+...... ..+|++|+|++|.++.....+ +..-++|++|+|++|.|
T Consensus 212 ~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 212 YLDTMTPNCLY--GLNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp TCCEECTTTTT--TCCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCC
T ss_pred cccccCccccc--CccccEEECcCCcccccCHHH----hcCccccCeeECCCCcC
Confidence 1111111 336666666666666544322 33345566666666554
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.42 E-value=9.8e-08 Score=91.29 Aligned_cols=175 Identities=16% Similarity=0.051 Sum_probs=111.7
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+++.|.|++. .+... ..-..+.++|++|+|++|.+....-. ++.. --++++|.+..+.+ + +
T Consensus 53 ~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~----l~~L~~L~Ls~n~l-~----~ 114 (353)
T 2z80_A 53 AVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEED----SFSS----LGSLEHLDLSYNYL-S----N 114 (353)
T ss_dssp TCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTT----TTTT----CTTCCEEECCSSCC-S----S
T ss_pred cCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHh----hcCC----CCCCCEEECCCCcC-C----c
Confidence 5777776655 22111 11134567999999999988753211 1111 13488888888877 4 2
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCC-CCCcccccCCCChhhhhhcCcccCCc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSL 355 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~~~~c~~ls~aL~~nks~~~L 355 (414)
.+ ..++....+|++|+|++|++..-... ..+...+ +|++|+|++|. +++ ..- .++.... +|
T Consensus 115 ~~---~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~-~L~~L~l~~n~~~~~----~~~----~~~~~l~---~L 176 (353)
T 2z80_A 115 LS---SSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLT-KLQILRVGNMDTFTK----IQR----KDFAGLT---FL 176 (353)
T ss_dssp CC---HHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCT-TCCEEEEEESSSCCE----ECT----TTTTTCC---EE
T ss_pred CC---HhHhCCCccCCEEECCCCCCcccCch---hhhccCC-CCcEEECCCCccccc----cCH----HHccCCC---CC
Confidence 22 23467789999999999998742210 1233444 89999999994 665 111 2343334 49
Q ss_pred ceeehH--HH----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 356 RLLNLS--HI----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 356 ~~LnLs--~l----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|+|+ .+ .+++.+ -.+|++|++++|.++..... ....-++|++|++++|+|+
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKS--IQNVSHLILHMKQHILLLEI----FVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEEEETTCCEECTTTTTT--CSEEEEEEEECSCSTTHHHH----HHHHTTTEEEEEEESCBCT
T ss_pred CEEECCCCCcCccCHHHHhc--cccCCeecCCCCccccchhh----hhhhcccccEEECCCCccc
Confidence 999995 22 233333 57899999999999765533 2334588999999999874
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.41 E-value=4.4e-07 Score=84.68 Aligned_cols=118 Identities=21% Similarity=0.170 Sum_probs=89.5
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~ 337 (414)
.++.|.+..+.+ + . +. .+....+|+.|+|++|++.+-.. +...+ .|++|+|++|.|++
T Consensus 42 ~L~~L~l~~n~i-~----~----l~-~l~~l~~L~~L~L~~N~i~~~~~------l~~l~-~L~~L~L~~N~l~~----- 99 (263)
T 1xeu_A 42 GVQNFNGDNSNI-Q----S----LA-GMQFFTNLKELHLSHNQISDLSP------LKDLT-KLEELSVNRNRLKN----- 99 (263)
T ss_dssp TCSEEECTTSCC-C----C----CT-TGGGCTTCCEEECCSSCCCCCGG------GTTCS-SCCEEECCSSCCSC-----
T ss_pred cCcEEECcCCCc-c----c----ch-HHhhCCCCCEEECCCCccCCChh------hccCC-CCCEEECCCCccCC-----
Confidence 477888888887 4 1 22 46778999999999999988654 55555 99999999999998
Q ss_pred CCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 338 DRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 338 ~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
-. .+.. .+|++|+|+ .+. ..+.+ -.+|+.|+|++|.+++.. .+..-++|++|++++|+|
T Consensus 100 -l~----~~~~----~~L~~L~L~~N~l~~~~~l~~--l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 100 -LN----GIPS----ACLSRLFLDNNELRDTDSLIH--LKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp -CT----TCCC----SSCCEEECCSSCCSBSGGGTT--CTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCC
T ss_pred -cC----cccc----CcccEEEccCCccCCChhhcC--cccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcC
Confidence 11 1111 359999995 111 22344 678999999999999862 577789999999999998
Q ss_pred C
Q 015056 414 S 414 (414)
Q Consensus 414 ~ 414 (414)
+
T Consensus 163 ~ 163 (263)
T 1xeu_A 163 T 163 (263)
T ss_dssp C
T ss_pred c
Confidence 4
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=92.31 Aligned_cols=154 Identities=13% Similarity=0.161 Sum_probs=90.8
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+....-.. +.. --++++|.+..+.+ + ..+ ..++....+|++|+|++|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~----~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGA----FNN----LFNLRTLGLRSNRL-K----LIP---LGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTT----TTT----CTTCCEEECCSSCC-C----SCC---TTSSTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCccCEeChhh----hhC----CccCCEEECCCCcC-C----ccC---cccccCCCCCCEEECCCCcc
Confidence 45568899999888776432111 111 12477777776665 3 111 12345567888888888887
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCce
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSV 375 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~L 375 (414)
...... .+...+ +|++|+|++|.|++ ..- .++... .+|++|+|+ .+ .+++.. -.+|
T Consensus 117 ~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~--l~~L 178 (477)
T 2id5_A 117 VILLDY----MFQDLY-NLKSLEVGDNDLVY----ISH----RAFSGL---NSLEQLTLEKCNLTSIPTEALSH--LHGL 178 (477)
T ss_dssp CEECTT----TTTTCT-TCCEEEECCTTCCE----ECT----TSSTTC---TTCCEEEEESCCCSSCCHHHHTT--CTTC
T ss_pred ccCChh----Hccccc-cCCEEECCCCccce----eCh----hhccCC---CCCCEEECCCCcCcccChhHhcc--cCCC
Confidence 644221 233344 78888888888876 211 233322 347788874 11 122333 5678
Q ss_pred eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 376 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 376 q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+.|+|++|.++..... ++..-++|++|++++|.+
T Consensus 179 ~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 179 IVLRLRHLNINAIRDY----SFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CEEEEESCCCCEECTT----CSCSCTTCCEEEEECCTT
T ss_pred cEEeCCCCcCcEeChh----hcccCcccceeeCCCCcc
Confidence 8888888887764332 344557788888888753
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=93.11 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+....... +.. --++++|.+..+.+ +. .+ ..++....+|+.|+|++|++
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~----~~~----l~~L~~L~L~~n~l-~~----~~---~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGA----FNG----LANLNTLELFDNRL-TT----IP---NGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGG----GTT----CSSCCEEECCSSCC-SS----CC---TTTSCSCSSCCEEECCSCCC
T ss_pred hCCCCCCEEECCCCcCCccChhh----ccC----CccCCEEECCCCcC-Ce----eC---HhHhhccccCceeeCCCCcc
Confidence 45678999999999876533221 111 12477788877766 41 11 12455668888888888888
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeE
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQV 377 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~ 377 (414)
..-.. ..+...+ +|++|+|++|..-+.+ .- .++.. +.+|++|+|+ .+. ..+.. -.+|++
T Consensus 149 ~~~~~----~~~~~l~-~L~~L~l~~~~~l~~i---~~----~~~~~---l~~L~~L~L~~n~l~~~~~~~~--l~~L~~ 211 (440)
T 3zyj_A 149 ESIPS----YAFNRIP-SLRRLDLGELKRLSYI---SE----GAFEG---LSNLRYLNLAMCNLREIPNLTP--LIKLDE 211 (440)
T ss_dssp CEECT----TTTTTCT-TCCEEECCCCTTCCEE---CT----TTTTT---CSSCCEEECTTSCCSSCCCCTT--CSSCCE
T ss_pred cccCH----HHhhhCc-ccCEeCCCCCCCccee---Cc----chhhc---ccccCeecCCCCcCccccccCC--CcccCE
Confidence 64322 1223344 7888888885433311 11 23433 3448888885 111 11222 568999
Q ss_pred EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|+|++|.++.... .++..-++|++|++++|+|+
T Consensus 212 L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 212 LDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp EECTTSCCCEECT----TTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCccCccCh----hhhccCccCCEEECCCCcee
Confidence 9999999987543 34556688999999999874
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.40 E-value=1.1e-07 Score=99.48 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=88.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCc-ccHHHHHHH--HhcCCcccEEEccC
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS-SVVVELVSF--LSSGRSLCSLKLRH 298 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~-~~~~~Las~--Lssn~sL~~L~Ls~ 298 (414)
+.++|++|+|++|.+....- +.+.. --.++.|.+..+. + + . ..+.++... +....+|++|+|++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p----~~l~~----l~~L~~L~Ls~n~~l-~---~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP----TFLKA----LPEMQLINVACNRGI-S---GEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC----TTTTT----CSSCCEEECTTCTTS-C---HHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred ccCCCCEEEecCCcCCccCh----HHHhc----CCCCCEEECcCCCCC-c---cccchHHHHhhhccccCCCCCEEECCC
Confidence 55577777777776554211 11111 1246667777666 4 4 2 455555543 34457777888888
Q ss_pred CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCC
Q 015056 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGT 373 (414)
Q Consensus 299 N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c 373 (414)
|++. +--. ...+...+ +|++|+|++|.|++.+ . ++.. +.+|++|+|+ .+...+.+ -.
T Consensus 315 n~l~-~ip~--~~~l~~l~-~L~~L~L~~N~l~g~i--------p-~~~~---l~~L~~L~L~~N~l~~lp~~l~~--l~ 376 (636)
T 4eco_A 315 NNLK-TFPV--ETSLQKMK-KLGMLECLYNQLEGKL--------P-AFGS---EIKLASLNLAYNQITEIPANFCG--FT 376 (636)
T ss_dssp SCCS-SCCC--HHHHTTCT-TCCEEECCSCCCEEEC--------C-CCEE---EEEESEEECCSSEEEECCTTSEE--EC
T ss_pred CcCC-ccCc--hhhhccCC-CCCEEeCcCCcCccch--------h-hhCC---CCCCCEEECCCCccccccHhhhh--hc
Confidence 7775 1110 01334444 7888888888887411 1 2222 2348888884 22222333 34
Q ss_pred c-eeEEEeecccCCchhHHHHHHHHhcC--CCCcEEecCCCCCC
Q 015056 374 S-VQVLNIGAIGLGSSGFRVLQDGVTKE--LKLVNINIRFKPIS 414 (414)
Q Consensus 374 ~-Lq~L~L~~c~lg~~gcqaLa~aL~~N--~~L~~LdLs~N~i~ 414 (414)
+ |+.|+|++|.++.. ...+... .+|++|++++|+|+
T Consensus 377 ~~L~~L~Ls~N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 377 EQVENLSFAHNKLKYI-----PNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp TTCCEEECCSSCCSSC-----CSCCCTTCSSCEEEEECCSSCTT
T ss_pred ccCcEEEccCCcCccc-----chhhhhcccCccCEEECcCCcCC
Confidence 5 88899999888842 2222222 37889999988873
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.39 E-value=7.7e-08 Score=95.46 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=96.6
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+....... +.. --++++|.+..+.+ + ..+ ..++....+|++|+|++|++
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~----~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGA----FNG----LASLNTLELFDNWL-T----VIP---SGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT----TTT----CTTCCEEECCSSCC-S----BCC---TTTSSSCTTCCEEECCSCCC
T ss_pred CCCCCCCEEECCCCccCCcChhh----ccC----cccCCEEECCCCcC-C----ccC---hhhhcccCCCCEEECCCCCc
Confidence 45578999999999876532211 111 12477788877766 4 111 22345677888888888888
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCcee
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQ 376 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq 376 (414)
..-.. ..+...+ +|++|+|++| .++. + .- .++.. +.+|++|+|+ .+.+ .+.. -.+|+
T Consensus 160 ~~~~~----~~~~~l~-~L~~L~l~~~~~l~~-i---~~----~~~~~---l~~L~~L~L~~n~l~~~~~~~~--l~~L~ 221 (452)
T 3zyi_A 160 ESIPS----YAFNRVP-SLMRLDLGELKKLEY-I---SE----GAFEG---LFNLKYLNLGMCNIKDMPNLTP--LVGLE 221 (452)
T ss_dssp CEECT----TTTTTCT-TCCEEECCCCTTCCE-E---CT----TTTTT---CTTCCEEECTTSCCSSCCCCTT--CTTCC
T ss_pred ceeCH----hHHhcCC-cccEEeCCCCCCccc-c---Ch----hhccC---CCCCCEEECCCCcccccccccc--ccccc
Confidence 64321 1233444 8888888884 4443 1 11 23333 3448899985 2211 1222 56899
Q ss_pred EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|+|++|.++.... ..+..-++|++|++++|+|+
T Consensus 222 ~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 222 ELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp EEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCC
T ss_pred EEECcCCcCcccCc----ccccCccCCCEEEeCCCcCc
Confidence 99999999987543 34556688999999999874
No 82
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.39 E-value=6.4e-08 Score=92.03 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=113.0
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
-+|++|.|++. .+..... -+.+.++|++|+|++|.+...... .+.. --.+++|.+..+.+ + .
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~----l~~L~~L~L~~N~l-~---~ 163 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPD-----FLSQIKTLVTLDFSYNALSGTLPP----SISS----LPNLVGITFDGNRI-S---G 163 (313)
T ss_dssp TTCSEEEEEEECCEEECCG-----GGGGCTTCCEEECCSSEEESCCCG----GGGG----CTTCCEEECCSSCC-E---E
T ss_pred CCCCEEECcCCeeCCcCCH-----HHhCCCCCCEEeCCCCccCCcCCh----HHhc----CCCCCeEECcCCcc-c---C
Confidence 47888888876 2211111 134557999999999987642211 1111 13488899988877 4 2
Q ss_pred ccHHHHHHHHhcCC-cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056 276 SVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (414)
Q Consensus 276 ~~~~~Las~Lssn~-sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~ 354 (414)
..+.. +.... +|+.|+|++|++....... +... .|++|+|++|.|++. ....+.... +
T Consensus 164 ~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~----~~~l--~L~~L~Ls~N~l~~~--------~~~~~~~l~---~ 222 (313)
T 1ogq_A 164 AIPDS----YGSFSKLFTSMTISRNRLTGKIPPT----FANL--NLAFVDLSRNMLEGD--------ASVLFGSDK---N 222 (313)
T ss_dssp ECCGG----GGCCCTTCCEEECCSSEEEEECCGG----GGGC--CCSEEECCSSEEEEC--------CGGGCCTTS---C
T ss_pred cCCHH----HhhhhhcCcEEECcCCeeeccCChH----HhCC--cccEEECcCCcccCc--------CCHHHhcCC---C
Confidence 33333 34454 8999999999986433222 2222 399999999999971 123444434 4
Q ss_pred cceeehH--HHH---hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 355 LRLLNLS--HIA---ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 355 L~~LnLs--~l~---~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
|++|+|+ .+. ..... -.+|++|+|++|.++.. +...+..-++|++||+++|+|
T Consensus 223 L~~L~L~~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGKVGL--SKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CSEEECCSSEECCBGGGCCC--CTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEE
T ss_pred CCEEECCCCceeeecCcccc--cCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCcc
Confidence 9999995 221 12223 57899999999999854 233466778999999999986
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=3.4e-07 Score=100.89 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=78.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCc-ccHHHHHHH---HhcCCcccEEEcc
Q 015056 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS-SVVVELVSF---LSSGRSLCSLKLR 297 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~-~~~~~Las~---Lssn~sL~~L~Ls 297 (414)
+.++|++|+|++|.+....- ..+.. --+++.|.+..+. + + . ..|.++... +....+|+.|+|+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP----~~l~~----L~~L~~L~Ls~N~~l-s---g~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP----DFLYD----LPELQSLNIACNRGI-S---AAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC----GGGGG----CSSCCEEECTTCTTS-C---HHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred cCCCCCEEECcCCCCCccCh----HHHhC----CCCCCEEECcCCCCc-c---cccchHHHHhhhhcccccCCccEEEee
Confidence 44566666666665543211 11111 0235566666555 4 3 2 344444432 2445567777777
Q ss_pred CCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H---HHhhccccCC
Q 015056 298 HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H---IAASLGKFFG 372 (414)
Q Consensus 298 ~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~---l~~agvk~L~ 372 (414)
+|.+. .--. ...+...+ +|++|+|++|.|+. + . .+.. +.+|++|+|+ . +...+.+ -
T Consensus 557 ~N~L~-~ip~--~~~l~~L~-~L~~L~Ls~N~l~~-l---p------~~~~---L~~L~~L~Ls~N~l~~lp~~l~~--l 617 (876)
T 4ecn_A 557 YNNLE-EFPA--SASLQKMV-KLGLLDCVHNKVRH-L---E------AFGT---NVKLTDLKLDYNQIEEIPEDFCA--F 617 (876)
T ss_dssp SSCCC-BCCC--HHHHTTCT-TCCEEECTTSCCCB-C---C------CCCT---TSEESEEECCSSCCSCCCTTSCE--E
T ss_pred CCcCC-ccCC--hhhhhcCC-CCCEEECCCCCccc-c---h------hhcC---CCcceEEECcCCccccchHHHhh--c
Confidence 77665 1100 01334444 67777777777664 1 1 2222 2347777774 2 2222222 3
Q ss_pred Cc-eeEEEeecccCCchhHHHHHHHHh--cCCCCcEEecCCCCC
Q 015056 373 TS-VQVLNIGAIGLGSSGFRVLQDGVT--KELKLVNINIRFKPI 413 (414)
Q Consensus 373 c~-Lq~L~L~~c~lg~~gcqaLa~aL~--~N~~L~~LdLs~N~i 413 (414)
.+ |+.|+|++|.++.. ...+. .+.+|++|++++|+|
T Consensus 618 ~~~L~~L~Ls~N~L~~l-----p~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLKYI-----PNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CTTCCEEECCSSCCCSC-----CSCCCTTCSSCEEEEECCSSCT
T ss_pred cccCCEEECcCCCCCcC-----chhhhccccCCCCEEECcCCcC
Confidence 34 78888888877732 12222 223478888888876
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=1.2e-07 Score=97.79 Aligned_cols=37 Identities=35% Similarity=0.370 Sum_probs=19.8
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+|+.|+|++|.+.+- ..+...+ +|++|+|++|.|++
T Consensus 232 ~~L~~L~L~~n~l~~~------~~l~~l~-~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 232 VELTILKLQHNNLTDT------AWLLNYP-GLVEVDLSYNELEK 268 (597)
T ss_dssp SCCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCE
T ss_pred CCCCEEECCCCCCCCC------hhhccCC-CCCEEECCCCccCC
Confidence 3566666666666542 2333444 56666666666554
No 85
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.38 E-value=3e-07 Score=93.50 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=17.1
Q ss_pred eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+++|++++|.++..... .-.+.+|++|++++|.+
T Consensus 183 l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQ-----AFQGIKLHELTLRGNFN 216 (606)
T ss_dssp CCEEECTTCCCCEECTT-----TTTTCEEEEEEEESCCS
T ss_pred cceeeccCCCcceeCcc-----cccCceeeeeeccCCcc
Confidence 34555555555532221 11233577777777654
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.37 E-value=1.4e-07 Score=93.69 Aligned_cols=198 Identities=20% Similarity=0.153 Sum_probs=100.2
Q ss_pred cchhhhcccccccchhhhchhcc-ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcC
Q 015056 174 HYARCLRLQNALCVEETCQLLRE-SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (414)
Q Consensus 174 ~yvr~l~l~~~l~~~~~~~l~~~-ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~ 251 (414)
..++.|.|.+---..-...-+.+ -+|+.|.|++. .+.... .-..+.++|++|+|++|.+..-.-. ++..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-----GAFNGLASLNTLELFDNWLTVIPSG----AFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCSBCCTT----TSSS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-----hhccCcccCCEEECCCCcCCccChh----hhcc
Confidence 45666666542111111122333 37888888765 222110 1124557999999999988642211 1111
Q ss_pred ccccccccceeeccccccccCCCcccHH-HHH---------------------HHHhcCCcccEEEccCCCCCchhHHHH
Q 015056 252 KRKRIHKIENLSIDISSFIENCPSSVVV-ELV---------------------SFLSSGRSLCSLKLRHCHLDRDFGRMV 309 (414)
Q Consensus 252 p~v~~C~lq~lsl~tc~~~~~~~~~~~~-~La---------------------s~Lssn~sL~~L~Ls~N~L~d~gaklL 309 (414)
--++++|.+..+.+ + ..+. .+. .++....+|+.|+|++|++.+-.
T Consensus 146 ----l~~L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---- 212 (452)
T 3zyi_A 146 ----LSKLRELWLRNNPI-E----SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---- 212 (452)
T ss_dssp ----CTTCCEEECCSCCC-C----EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----
T ss_pred ----cCCCCEEECCCCCc-c----eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----
Confidence 13588888887776 4 1111 010 02333445555555555554321
Q ss_pred HHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCceeEEEeecc
Q 015056 310 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSVQVLNIGAI 383 (414)
Q Consensus 310 ~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c 383 (414)
.+...+ +|++|+|++|.|++ .. ..++... .+|++|+|+ .+. ++... -.+|+.|+|++|
T Consensus 213 --~~~~l~-~L~~L~Ls~N~l~~----~~----~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N 276 (452)
T 3zyi_A 213 --NLTPLV-GLEELEMSGNHFPE----IR----PGSFHGL---SSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHN 276 (452)
T ss_dssp --CCTTCT-TCCEEECTTSCCSE----EC----GGGGTTC---TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS
T ss_pred --cccccc-cccEEECcCCcCcc----cC----cccccCc---cCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCC
Confidence 233333 56666666666654 11 1233222 336777774 111 12222 356777777777
Q ss_pred cCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 384 GLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 384 ~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.++..... ++..-++|++|+|++|.+
T Consensus 277 ~l~~~~~~----~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 277 NLSSLPHD----LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSCCCTT----SSTTCTTCCEEECCSSCE
T ss_pred cCCccChH----HhccccCCCEEEccCCCc
Confidence 77754322 233456777888887764
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.36 E-value=2.6e-07 Score=95.49 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=23.4
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
++|++|+|++|.++...-..++. ..+++|++|++++|+|+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~--l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLG--LKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGG--GGGSCCCEEECTTSCCC
T ss_pred ccccEEEccCCcccccChhHhhc--cCcCCCCEEECCCCCcC
Confidence 56666666666666544333222 12355888888887763
No 88
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.36 E-value=1.2e-07 Score=91.09 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=81.6
Q ss_pred CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (414)
Q Consensus 224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d 303 (414)
.++|++|+|++|.+.. +. ..+. .--++++|.+..+.+ + ..+ ..+....+|+.|+|++|.+..
T Consensus 103 l~~L~~L~L~~n~l~~--lp---~~~~----~l~~L~~L~Ls~n~l-~----~lp----~~l~~l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLME--LP---DTMQ----QFAGLETLTLARNPL-R----ALP----ASIASLNRLRELSIRACPELT 164 (328)
T ss_dssp GTTCSEEEEESSCCCC--CC---SCGG----GGTTCSEEEEESCCC-C----CCC----GGGGGCTTCCEEEEEEETTCC
T ss_pred CCCCCEEECCCCCccc--hh---HHHh----ccCCCCEEECCCCcc-c----cCc----HHHhcCcCCCEEECCCCCCcc
Confidence 4577888887777652 11 1111 112466777776665 3 222 224556777777777755432
Q ss_pred hhHHHHH-----HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCC
Q 015056 304 DFGRMVF-----SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGT 373 (414)
Q Consensus 304 ~gaklL~-----~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c 373 (414)
..-..+. ..+...+ +|++|+|++|.|+. +...+.... +|++|+|+ .+...+.+ -.
T Consensus 165 ~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~---------lp~~l~~l~---~L~~L~L~~N~l~~l~~~l~~--l~ 229 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLV-NLQSLRLEWTGIRS---------LPASIANLQ---NLKSLKIRNSPLSALGPAIHH--LP 229 (328)
T ss_dssp CCCSCSEEEC-CCCEEEST-TCCEEEEEEECCCC---------CCGGGGGCT---TCCEEEEESSCCCCCCGGGGG--CT
T ss_pred ccChhHhhccchhhhccCC-CCCEEECcCCCcCc---------chHhhcCCC---CCCEEEccCCCCCcCchhhcc--CC
Confidence 2111000 0011234 67777777777774 112333333 37777774 22222333 46
Q ss_pred ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+|+.|+|++|.+...- ...+..-++|++|+|++|++
T Consensus 230 ~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 230 KLEELDLRGCTALRNY----PPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp TCCEEECTTCTTCCBC----CCCTTCCCCCCEEECTTCTT
T ss_pred CCCEEECcCCcchhhh----HHHhcCCCCCCEEECCCCCc
Confidence 6788888877665432 22344556788888887764
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.34 E-value=3.7e-07 Score=83.15 Aligned_cols=105 Identities=18% Similarity=0.114 Sum_probs=52.7
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----- 361 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs----- 361 (414)
...+|+.|+|++|++..-.. ..+...+ +|++|+|++|.|++ ..- .++.. +.+|++|+|+
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~----~~~~~l~-~L~~L~Ls~N~l~~----l~~----~~~~~---l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPV----GVFDSLT-QLTVLDLGTNQLTV----LPS----AVFDR---LVHLKELFMCCNKLT 125 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCC
T ss_pred CccCCcEEECCCCCCCCcCh----hhcccCC-CcCEEECCCCcCCc----cCh----hHhCc---chhhCeEeccCCccc
Confidence 34566666666666633211 1122233 66666666666665 111 12222 2236666663
Q ss_pred HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 362 HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 362 ~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+.....+ -.+|+.|+|++|.++...- .++..-++|++|++++|.+
T Consensus 126 ~lp~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 126 ELPRGIER--LTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCTTGGG--CTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCB
T ss_pred ccCccccc--CCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCCc
Confidence 22222233 4566666666666664322 2344446666777766654
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.32 E-value=1.5e-07 Score=101.36 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=90.9
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.....-- -+++. .--+++.|.+..+.+ + .. ....+...++|++|+|++|.+
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~---~~~f~----~L~~L~~L~Ls~N~l-~---~~----~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTID---KEAFR----NLPNLRILDLGSSKI-Y---FL----HPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEEC---TTTTS----SCTTCCEEECTTCCC-C---EE----CTTSSCSCSSCCCEECTTCCC
T ss_pred cccccCeEEeCCCCCCccccC---HHHhc----CCCCCCEEECCCCcC-c---cc----CHhHccCCcccCEeeCcCCCC
Confidence 566788888888884321100 00111 012467777777766 3 11 123456678888888888887
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCce
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSV 375 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~L 375 (414)
.+..... ..+...+ +|++|||++|.|++ . . ....+.... +|++|+|+ .+. +.+..+-+.+|
T Consensus 110 ~~~~~~~--~~~~~L~-~L~~L~Ls~N~l~~----~--~-~~~~~~~L~---~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 110 SDAVLKD--GYFRNLK-ALTRLDLSKNQIRS----L--Y-LHPSFGKLN---SLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCSTT--CCCSSCS-SCCEEEEESCCCCC----C--C-CCGGGGTCS---SCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred CcccccC--ccccccC-CCCEEECCCCcccc----c--c-cchhHhhCC---CCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 6432110 0133344 78888888888876 1 1 112443334 48888884 121 11211113678
Q ss_pred eEEEeecccCCchhHHHHHHH--HhcCCCCcEEecCCCCCC
Q 015056 376 QVLNIGAIGLGSSGFRVLQDG--VTKELKLVNINIRFKPIS 414 (414)
Q Consensus 376 q~L~L~~c~lg~~gcqaLa~a--L~~N~~L~~LdLs~N~i~ 414 (414)
+.|+|+.|.++......++.. .-.+.+|++|++++|.++
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 888888888776433222211 123456999999998753
No 91
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.30 E-value=4.2e-07 Score=92.40 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.8
Q ss_pred CCCCCcEEEcccCCCCh
Q 015056 223 NSETLASLEFLHCKLSP 239 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~~ 239 (414)
+.++|++|++++|.+..
T Consensus 348 ~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 348 NLENLRELDLSHDDIET 364 (606)
T ss_dssp TCTTCCEEECCSSCCCE
T ss_pred ccCcCCEEECCCCcccc
Confidence 34466666666666544
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.30 E-value=1.1e-06 Score=90.84 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=90.1
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|+|++|.+....-..+. .+ -.++.|.+..+.+ + ..+. .++....+|++|+|++|++
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l-------~~L~~L~L~~n~l-~----~l~~---~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQ-KL-------PMLKVLNLQHNEL-S----QLSD---KTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHH-HC-------TTCCEEECCSSCC-C----CCCT---TTTTTCTTCSEEECCSSCC
T ss_pred hCCCcCcEEECCCCccCccCHHHHh-cc-------cCcCEEECCCCcc-C----ccCh---hhhccCCCCCEEECCCCcc
Confidence 3446889999998877653222111 11 2366777777666 4 1111 1345677888888888877
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCce
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSV 375 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~L 375 (414)
..-... ++...+ +|++|+|++|.+++ ..- .++. ++.+|++|+|+ .+ ..+...+-..+|
T Consensus 110 ~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 110 QKIKNN----PFVKQK-NLITLDLSHNGLSS----TKL----GTQV---QLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp CCCCSC----TTTTCT-TCCEEECCSSCCSC----CCC----CSSS---CCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CccChh----HccccC-CCCEEECCCCcccc----cCc----hhhc---ccccCCEEEccCCcccccCHHHhhccccccc
Confidence 542211 223334 78888888888876 111 1232 23448888874 11 111111114678
Q ss_pred eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 376 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 376 q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++|+|++|.++..... ++..-.+|++|++++|.+
T Consensus 174 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp SEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCC
T ss_pred cEEECCCCcccccChh----hhhhhhhhhhhhcccccc
Confidence 8888888887764422 334456788888887765
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.30 E-value=4.5e-07 Score=90.86 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=10.0
Q ss_pred CCCCCcEEEcccCCCC
Q 015056 223 NSETLASLEFLHCKLS 238 (414)
Q Consensus 223 n~~tLt~L~L~~~~L~ 238 (414)
+.++|++|+|++|.+.
T Consensus 50 ~l~~L~~L~Ls~n~i~ 65 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQ 65 (570)
T ss_dssp TCSSCCEEECTTCCCC
T ss_pred CCCCceEEECCCCcCC
Confidence 4456777777777554
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.30 E-value=3.6e-07 Score=94.30 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=63.2
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|+.|.|++. .+... ..-..+.++|++|+|++|.+....-.. +. .--+++.|.+..+.+ + .
T Consensus 76 ~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~----~l~~L~~L~L~~n~l-~----~ 137 (597)
T 3oja_B 76 QVELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRYLPPHV----FQ----NVPLLTVLVLERNDL-S----S 137 (597)
T ss_dssp CCSEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TT----TCTTCCEEECCSSCC-C----C
T ss_pred CCcEEECCCCCCCCCC-----hHHhcCCCCCCEEECCCCcCCCCCHHH----Hc----CCCCCCEEEeeCCCC-C----C
Confidence 5666666654 22111 011245568888888888775522110 00 112477777877776 4 1
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+. .++....+|+.|+|++|.+..-... .+...+ +|++|+|++|.|++
T Consensus 138 l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~-~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 138 LPR---GIFHNTPKLTTLSMSNNNLERIEDD----TFQATT-SLQNLQLSSNRLTH 185 (597)
T ss_dssp CCT---TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCT-TCCEEECTTSCCSB
T ss_pred CCH---HHhccCCCCCEEEeeCCcCCCCChh----hhhcCC-cCcEEECcCCCCCC
Confidence 221 2245667888888888888653321 233344 78888888888886
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.29 E-value=2.4e-07 Score=94.14 Aligned_cols=91 Identities=21% Similarity=0.147 Sum_probs=45.5
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
.+.++|++|++++|.+...... .+... -.++.+.+..+.+ +.. .+ ...+...++|+.|+|++|++
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l----~~L~~L~l~~n~l-~~~---~~---~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTE----AFKEC----PQLELLDLAFTRL-KVK---DA---QSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTT----TTTTC----TTCSEEECTTCCE-ECC---TT---CCTTTTCTTCCEEECTTCCC
T ss_pred ccCCCCCEEECCCCcCCcCCHH----HhcCC----ccCCeEECCCCcC-CCc---cc---chhhhCcccCCEEECCCCcc
Confidence 4456888888888876543211 11111 2356666665554 211 00 11234456666666666666
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
...... .+...+ +|++|+|++|.|++
T Consensus 438 ~~~~~~----~~~~l~-~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 438 DISSEQ----LFDGLP-ALQHLNLQGNHFPK 463 (606)
T ss_dssp BTTCTT----TTTTCT-TCCEEECTTCBCGG
T ss_pred CCcCHH----HHhCCC-CCCEEECCCCCCCc
Confidence 443221 122233 56666666666654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=4.3e-07 Score=95.50 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=89.2
Q ss_pred CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (414)
Q Consensus 224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d 303 (414)
.++|++|+|++|.+.. +..++ -+++.|.+..+.+ + ..+. ...+|+.|+|++|++..
T Consensus 99 l~~L~~L~Ls~N~l~~--ip~l~----------~~L~~L~Ls~N~l-~----~lp~-------~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 99 PASLEYLDACDNRLST--LPELP----------ASLKHLDVDNNQL-T----MLPE-------LPALLEYINADNNQLTM 154 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCCCC----------TTCCEEECCSSCC-S----CCCC-------CCTTCCEEECCSSCCSC
T ss_pred cCCCCEEEccCCCCCC--cchhh----------cCCCEEECCCCcC-C----CCCC-------cCccccEEeCCCCccCc
Confidence 4688999999998765 22111 1588888887776 4 1222 35789999999999864
Q ss_pred hhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCce------
Q 015056 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSV------ 375 (414)
Q Consensus 304 ~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~L------ 375 (414)
-.. .++ +|++|+|++|.|++ +. . +. . +|++|+|+ .+. .+-. +..+|
T Consensus 155 lp~--------~l~-~L~~L~Ls~N~L~~-lp--------~-l~--~---~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~ 208 (571)
T 3cvr_A 155 LPE--------LPT-SLEVLSVRNNQLTF-LP--------E-LP--E---SLEALDVSTNLLE-SLPA-VPVRNHHSEET 208 (571)
T ss_dssp CCC--------CCT-TCCEEECCSSCCSC-CC--------C-CC--T---TCCEEECCSSCCS-SCCC-CC--------C
T ss_pred CCC--------cCC-CcCEEECCCCCCCC-cc--------h-hh--C---CCCEEECcCCCCC-chhh-HHHhhhccccc
Confidence 222 233 89999999999987 11 1 22 3 48888885 222 1111 22266
Q ss_pred -eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 376 -QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 376 -q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+.|+|++|.|+. |...+...++|+.|+|++|.|+
T Consensus 209 L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 209 EIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCC
T ss_pred ceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCC
Confidence 999999999984 3444556788999999999874
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.28 E-value=9.4e-07 Score=89.16 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=19.8
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
-.+|+.|+|++|.++... +..-++|++|++++|+|
T Consensus 211 l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCC
T ss_pred CCCCCEEECcCCcccccC-------ccccCCCCEEEeeCCcC
Confidence 355666666666666521 33445566666666655
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.28 E-value=6.5e-07 Score=81.21 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=55.2
Q ss_pred hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH
Q 015056 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI 363 (414)
Q Consensus 286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l 363 (414)
....+|+.|+|++|++..-.. .++...+ .|++|+|++|.|++ ..- .++.... +|++|+|+ .+
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~----~~~~~l~-~L~~L~Ls~N~l~~----~~~----~~~~~l~---~L~~L~Ls~N~l 117 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEE----GAFEGAS-GVNEILLTSNRLEN----VQH----KMFKGLE---SLKTLMLRSNRI 117 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECT----TTTTTCT-TCCEEECCSSCCCC----CCG----GGGTTCS---SCCEEECTTSCC
T ss_pred ccCCCCCEEECCCCcCCEECH----HHhCCCC-CCCEEECCCCccCc----cCH----hHhcCCc---CCCEEECCCCcC
Confidence 445666677777766653221 1222333 66677777776665 111 2332223 36666664 11
Q ss_pred ----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 364 ----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 364 ----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.++... -.+|+.|+|++|.++...- .++..-++|++|++++|.+
T Consensus 118 ~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 118 TCVGNDSFIG--LSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCBCTTSSTT--CTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSCCE
T ss_pred CeECHhHcCC--CccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCcCC
Confidence 122222 3566777777777665422 2333456677777777764
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.27 E-value=5.2e-07 Score=97.09 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=11.6
Q ss_pred cccEEEccCCCCCchhHHHHH
Q 015056 290 SLCSLKLRHCHLDRDFGRMVF 310 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~ 310 (414)
+|+.|+|++|.+.++....+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGG
T ss_pred ceeEEecCCCcCchhHHHHHH
Confidence 466666666665555444443
No 100
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.26 E-value=1.6e-07 Score=99.93 Aligned_cols=62 Identities=27% Similarity=0.268 Sum_probs=33.6
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.++.|.+..+.+ + .. +...+....+|+.|+|++|++...... .+...+ +|+.|+|++|.+++
T Consensus 395 ~L~~L~L~~n~l-~---~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~-~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 395 TLQELYLQNNGF-T---GK----IPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLS-KLRDLKLWLNMLEG 456 (768)
T ss_dssp CCCEEECCSSEE-E---EE----CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCT-TCCEEECCSSCCCS
T ss_pred CccEEECCCCcc-c---cc----cCHHHhcCCCCCEEECcCCcccCcccH----HHhcCC-CCCEEECCCCcccC
Confidence 366666666665 3 11 223345567777777777766432211 222333 56666666666664
No 101
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.26 E-value=4.1e-07 Score=95.10 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=91.2
Q ss_pred ccccceeeeecc-chHhHHHHHHHHhhCCCCCcEEEcccCC-CCh-h---HHHHHHhhhcCccccccccceeeccccccc
Q 015056 197 SKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCK-LSP-S---FVEGICRSLCSKRKRIHKIENLSIDISSFI 270 (414)
Q Consensus 197 ckLq~L~L~~~~-s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~-~---~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~ 270 (414)
.+|+.|.|++.. +..-- .-+.+.++|++|+|++|. ++. . ++..+...-.-+ .+++|.+..+.+
T Consensus 249 ~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l- 317 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLP-----TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNL- 317 (636)
T ss_dssp TTCCEEEEECCTTCSSCC-----TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCC-
T ss_pred CCCCEEEecCCcCCccCh-----HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcC-
Confidence 367777777652 11100 123456789999999997 766 2 222222111112 367777777766
Q ss_pred cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHH------------------HHHHHhccCCCCccEEeccCCCCCC
Q 015056 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR------------------MVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gak------------------lL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
+ ..+. ...+....+|+.|+|++|++..+.-. .+-..+...+..|++|+|++|.|+.
T Consensus 318 ~----~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 318 K----TFPV--ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp S----SCCC--HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred C----ccCc--hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence 3 1211 11455667777777777776511110 0001112222115555555555553
Q ss_pred cccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC---------CCceeEEEeecccCCchhHHHHHHHHhcCC
Q 015056 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF---------GTSVQVLNIGAIGLGSSGFRVLQDGVTKEL 401 (414)
Q Consensus 333 wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L---------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~ 401 (414)
.. ..+ ...++.+|++|+|+ .+.......+ ..+|+.|+|++|.++.... .+...-+
T Consensus 392 ----lp-----~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~ 457 (636)
T 4eco_A 392 ----IP-----NIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGS 457 (636)
T ss_dssp ----CC-----SCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTC
T ss_pred ----cc-----hhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCC
Confidence 10 111 11112247777774 2221111111 3477888888888774322 1222346
Q ss_pred CCcEEecCCCCCC
Q 015056 402 KLVNINIRFKPIS 414 (414)
Q Consensus 402 ~L~~LdLs~N~i~ 414 (414)
+|++|++++|+|+
T Consensus 458 ~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 458 PLSSINLMGNMLT 470 (636)
T ss_dssp CCSEEECCSSCCS
T ss_pred CCCEEECCCCCCC
Confidence 6777777777663
No 102
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.25 E-value=2.3e-07 Score=94.35 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=21.4
Q ss_pred CCceeEEEeecccCCchhHHHHHHHHhcCC-CCcEEecCCCCC
Q 015056 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKEL-KLVNINIRFKPI 413 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~-~L~~LdLs~N~i 413 (414)
-.+|++|+|++|.++.-. ..+..-+ +|++|++++|.+
T Consensus 520 l~~L~~L~l~~N~l~~~p-----~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIETSK-----GILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTCCEEECTTSCCCCEE-----SCGGGSCTTCCEEECCSCCC
T ss_pred CCcCCEEECCCCcCcccC-----HhHhhhcccCcEEEccCCCc
Confidence 356677777777766422 1133333 477777777765
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.25 E-value=5.3e-07 Score=77.28 Aligned_cols=105 Identities=22% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH-
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA- 364 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~- 364 (414)
..+|+.|+|++|.+.+- ..+...+ .|++|+|++|.|++.+ ...+.... +|++|+|+ .+.
T Consensus 48 l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~Ls~N~l~~~~--------~~~~~~l~---~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV------SNLPKLP-KLKKLELSENRIFGGL--------DMLAEKLP---NLTHLNLSGNKLKD 109 (168)
T ss_dssp GGGCCEEEEESSCCCCC------SSCCCCS-SCCEEEEESCCCCSCC--------CHHHHHCT---TCCEEECBSSSCCS
T ss_pred CCCCCEEeCcCCCCCCh------hhhccCC-CCCEEECcCCcCchHH--------HHHHhhCC---CCCEEeccCCccCc
Confidence 34566666666666543 3333333 5666666666666511 11221122 36666663 111
Q ss_pred ----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
..+.. -.+|+.|+|++|.++.... ....++..-++|++||+++|.+
T Consensus 110 ~~~~~~l~~--l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 110 ISTLEPLKK--LECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SGGGGGGSS--CSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred chhHHHHhc--CCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence 22333 4568888888888876543 1123556667899999988876
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.25 E-value=1.6e-06 Score=87.51 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=92.9
Q ss_pred cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (414)
Q Consensus 198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~ 276 (414)
+|+.|.|++. .+... +.+.++|++|+|++|.+.... +.. -..+++|.+..+.+ + .
T Consensus 65 ~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~-------~~~----l~~L~~L~L~~N~l-~----~ 120 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLTNLD-------VTP----LTKLTYLNCDTNKL-T----K 120 (457)
T ss_dssp TCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCC-------CTT----CTTCCEEECCSSCC-S----C
T ss_pred CCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCceee-------cCC----CCcCCEEECCCCcC-C----e
Confidence 5666666655 22211 344557777777777765531 111 13466677766665 3 1
Q ss_pred cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (414)
Q Consensus 277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~ 356 (414)
.+ +....+|++|+|++|++..- .+...+ .|++|++++|...+. . .+ ..+.+|+
T Consensus 121 l~------~~~l~~L~~L~l~~N~l~~l-------~l~~l~-~L~~L~l~~n~~~~~---~-------~~---~~l~~L~ 173 (457)
T 3bz5_A 121 LD------VSQNPLLTYLNCARNTLTEI-------DVSHNT-QLTELDCHLNKKITK---L-------DV---TPQTQLT 173 (457)
T ss_dssp CC------CTTCTTCCEEECTTSCCSCC-------CCTTCT-TCCEEECTTCSCCCC---C-------CC---TTCTTCC
T ss_pred ec------CCCCCcCCEEECCCCcccee-------ccccCC-cCCEEECCCCCcccc---c-------cc---ccCCcCC
Confidence 11 45567777777777777652 133344 677777777733320 1 12 1234588
Q ss_pred eeehH--HHHh-hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 357 LLNLS--HIAA-SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 357 ~LnLs--~l~~-agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|+|+ .+.. .+.. -.+|+.|++++|.++.. .+...++|++|++++|+|+
T Consensus 174 ~L~ls~n~l~~l~l~~--l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 174 TLDCSFNKITELDVSQ--NKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp EEECCSSCCCCCCCTT--CTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceecccc--CCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCccc
Confidence 88884 2111 1223 56789999999999876 2566788999999999874
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.23 E-value=5e-07 Score=78.56 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=68.2
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HH
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HI 363 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l 363 (414)
.+|+.|+|++|.+.+- ..+...+ .|++|+|++|.|++ ...+ .+.... +|++|+|+ .+
T Consensus 42 ~~L~~L~Ls~N~l~~~------~~l~~l~-~L~~L~Ls~N~l~~----~~~~----~~~~l~---~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL------DGFPLLR-RLKTLLVNNNRICR----IGEG----LDQALP---DLTELILTNNSLVEL 103 (176)
T ss_dssp TCCSEEECCSSCCCEE------CCCCCCS-SCCEEECCSSCCCE----ECSC----HHHHCT---TCCEEECCSCCCCCG
T ss_pred CCCCEEECCCCCCCcc------cccccCC-CCCEEECCCCcccc----cCcc----hhhcCC---CCCEEECCCCcCCcc
Confidence 3788888888888752 3455555 88888888888886 2111 222233 37788884 22
Q ss_pred Hh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 364 AA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 364 ~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.. .+.. -.+|+.|++++|.++..... -..++..-++|+.||++.|.+
T Consensus 104 ~~~~~l~~--l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 104 GDLDPLAS--LKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGGGGGG--CTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCH
T ss_pred hhhHhhhc--CCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCH
Confidence 22 3334 56789999999998764322 224566778899999998864
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.23 E-value=8.6e-07 Score=74.49 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=87.2
Q ss_pred cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (414)
Q Consensus 257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~ 336 (414)
.+++.+.+..+.+ +. ...+ ..+....+|+.|+|++|++.+- ..+...+ .|++|+|++|.|+++
T Consensus 17 ~~l~~L~l~~n~l-~~--~~~~----~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~Ls~n~i~~~--- 79 (149)
T 2je0_A 17 SDVKELVLDNSRS-NE--GKLE----GLTDEFEELEFLSTINVGLTSI------ANLPKLN-KLKKLELSDNRVSGG--- 79 (149)
T ss_dssp GGCSEEECTTCBC-BT--TBCC----SCCTTCTTCCEEECTTSCCCCC------TTCCCCT-TCCEEECCSSCCCSC---
T ss_pred ccCeEEEccCCcC-Ch--hHHH----HHHhhcCCCcEEECcCCCCCCc------hhhhcCC-CCCEEECCCCcccch---
Confidence 5688999998887 30 1122 2345678999999999999775 4455555 999999999999972
Q ss_pred cCCCChhhhhhcCcccCCcceeehH-----HHH--hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecC
Q 015056 337 YDRSGPLFSLGAGKSLQSLRLLNLS-----HIA--ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIR 409 (414)
Q Consensus 337 ~~c~~ls~aL~~nks~~~L~~LnLs-----~l~--~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs 409 (414)
....+.... +|++|+|+ .+. ..+.. -.+|+.|++++|.++.... ....++..-++|++||++
T Consensus 80 -----~~~~~~~l~---~L~~L~ls~N~i~~~~~~~~~~~--l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -----LEVLAEKCP---NLTHLNLSGNKIKDLSTIEPLKK--LENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -----THHHHHHCT---TCCEEECTTSCCCSHHHHGGGGG--CTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred -----HHHHhhhCC---CCCEEECCCCcCCChHHHHHHhh--CCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 223333334 49999995 221 34444 5789999999999987653 112345666889999986
Q ss_pred C
Q 015056 410 F 410 (414)
Q Consensus 410 ~ 410 (414)
.
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.22 E-value=2.9e-07 Score=98.04 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=19.6
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPI 413 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i 413 (414)
.+|++|+|++|.++...-. .+... ++|++|++++|+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~----~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp TTCCEEECCSSEEEESCCC----CSCTTCTTCSEEECCSSEE
T ss_pred CCCCEEECcCCccCCccCH----HHHhhcCcCCEEECcCCcC
Confidence 4566666666665532111 11122 5677777777754
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.22 E-value=6.1e-07 Score=79.47 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=21.0
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+|+.|+|++|.++.... .++..-++|++|++++|.+
T Consensus 124 ~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCB
T ss_pred CcCCEEECCCCccceeCH----HHhccCCCccEEEecCCCe
Confidence 456666666666664322 2234445666666666654
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.21 E-value=1.5e-06 Score=72.93 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=46.7
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|++++|.+....+....+.+ -+++.|.+..+.+ + ++ ..+....+|+.|+|++|.+...
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l-------~~L~~L~l~~n~l-~--------~~-~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEF-------EELEFLSTINVGL-T--------SI-ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTC-------TTCCEEECTTSCC-C--------CC-TTCCCCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhc-------CCCcEEECcCCCC-C--------Cc-hhhhcCCCCCEEECCCCcccch
Confidence 4677777777766432222111111 2366666666665 3 12 4455566777777777777654
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
... .. ...+ +|++|+|++|.|++
T Consensus 80 ~~~-~~---~~l~-~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 80 LEV-LA---EKCP-NLTHLNLSGNKIKD 102 (149)
T ss_dssp THH-HH---HHCT-TCCEEECTTSCCCS
T ss_pred HHH-Hh---hhCC-CCCEEECCCCcCCC
Confidence 211 11 1233 57777777777766
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=5e-07 Score=87.50 Aligned_cols=153 Identities=21% Similarity=0.169 Sum_probs=89.9
Q ss_pred CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (414)
Q Consensus 226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g 305 (414)
++++|+|++|.+..-... .+.. .--+++.|.+..+.+ + ... ...+....+|++|+|++|++..-.
T Consensus 40 ~l~~L~Ls~N~l~~l~~~----~~~~---~l~~L~~L~L~~N~i-~----~i~---~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAE----WTPT---RLTNLHSLLLSHNHL-N----FIS---SEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp TCSEEECCSSCCCEECTT----SSSS---CCTTCCEEECCSSCC-C----EEC---TTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCEEECCCCCCCccChh----hhhh---cccccCEEECCCCcC-C----ccC---hhhccCCCCCCEEECCCCcCCcCC
Confidence 466777777766542211 0100 112356666666555 3 111 123556788999999999986532
Q ss_pred HHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH---hhc----cccCCCcee
Q 015056 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA---ASL----GKFFGTSVQ 376 (414)
Q Consensus 306 aklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~---~ag----vk~L~c~Lq 376 (414)
.. .+...+ +|++|+|++|.|+. ..- .++... .+|++|+|+ .+. ... .. -.+|+
T Consensus 105 ~~----~~~~l~-~L~~L~L~~N~i~~----~~~----~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~~~~--l~~L~ 166 (361)
T 2xot_A 105 EF----LFSDLQ-ALEVLLLYNNHIVV----VDR----NAFEDM---AQLQKLYLSQNQISRFPVELIKDGNK--LPKLM 166 (361)
T ss_dssp TT----TTTTCT-TCCEEECCSSCCCE----ECT----TTTTTC---TTCCEEECCSSCCCSCCGGGTC------CTTCC
T ss_pred HH----HhCCCc-CCCEEECCCCcccE----ECH----HHhCCc---ccCCEEECCCCcCCeeCHHHhcCccc--CCcCC
Confidence 11 223344 89999999999987 211 244333 348888884 111 111 12 46789
Q ss_pred EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.|+|++|.|+......++.. .+..|+.|+|++|.+
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l--~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKL--PAWVKNGLYLHNNPL 201 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHS--CHHHHTTEECCSSCE
T ss_pred EEECCCCCCCccCHHHhhhc--cHhhcceEEecCCCc
Confidence 99999999998765555432 111257899999975
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.18 E-value=5.5e-07 Score=77.18 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=83.7
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L 301 (414)
..+++|++|+|++|.+.+..+...... --+++.|.+..+.+ + ++ ..+....+|++|+|++|.+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~-------l~~L~~L~l~~n~l-~--------~~-~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAE-------FVNLEFLSLINVGL-I--------SV-SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGG-------GGGCCEEEEESSCC-C--------CC-SSCCCCSSCCEEEEESCCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHh-------CCCCCEEeCcCCCC-C--------Ch-hhhccCCCCCEEECcCCcC
Confidence 445678999999998763222211111 13477888887776 4 12 5567778999999999999
Q ss_pred CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-------hccccCC
Q 015056 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA-------SLGKFFG 372 (414)
Q Consensus 302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~-------agvk~L~ 372 (414)
..... .+. ...+ +|++|+|++|.|+++- .. ..+.. +.+|++|+|+ .+.. .... -
T Consensus 84 ~~~~~-~~~---~~l~-~L~~L~Ls~N~l~~~~------~~-~~l~~---l~~L~~L~l~~N~l~~~~~~~~~~~~~--l 146 (168)
T 2ell_A 84 FGGLD-MLA---EKLP-NLTHLNLSGNKLKDIS------TL-EPLKK---LECLKSLDLFNCEVTNLNDYRESVFKL--L 146 (168)
T ss_dssp CSCCC-HHH---HHCT-TCCEEECBSSSCCSSG------GG-GGGSS---CSCCCEEECCSSGGGTSTTHHHHHHTT--C
T ss_pred chHHH-HHH---hhCC-CCCEEeccCCccCcch------hH-HHHhc---CCCCCEEEeeCCcCcchHHHHHHHHHh--C
Confidence 76421 112 2244 8999999999998721 01 23433 3458999984 2222 2333 4
Q ss_pred CceeEEEeecccCCc
Q 015056 373 TSVQVLNIGAIGLGS 387 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~ 387 (414)
.+|+.|+++.|.+..
T Consensus 147 ~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 147 PQLTYLDGYDREDQE 161 (168)
T ss_dssp SSCCEETTEETTSCB
T ss_pred ccCcEecCCCCChhh
Confidence 689999999998754
No 112
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.18 E-value=2.8e-07 Score=92.41 Aligned_cols=109 Identities=27% Similarity=0.289 Sum_probs=62.8
Q ss_pred HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H 362 (414)
Q Consensus 285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~ 362 (414)
+...++|+.|+|++|++..... ..+...+ +|++|+|++|.+++ .. +...+. .+.+|++|+|+ .
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~------~~-~p~~~~---~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFN----GIFNGLS-SLEVLKMAGNSFQE------NF-LPDIFT---ELRNLTFLDLSQCQ 481 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCT----TTTTTCT-TCCEEECTTCEEGG------GE-ECSCCT---TCTTCCEEECTTSC
T ss_pred hhcCCCCCEEeCcCCcccccch----hhhhcCC-cCcEEECcCCcCcc------cc-chhhhh---cccCCCEEECCCCc
Confidence 3445666666666666544321 1122233 66666666666653 00 112232 23458888885 2
Q ss_pred HH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 363 IA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 363 l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+. .++.. -.+|+.|+|++|.++...- .++...++|++|++++|+++
T Consensus 482 l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 482 LEQLSPTAFNS--LSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCEECTTTTTT--CTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBC
T ss_pred cccCChhhhhc--ccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCCccc
Confidence 22 22333 4678889998888887543 24456678999999998863
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.16 E-value=1.5e-07 Score=83.43 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=91.4
Q ss_pred HHHHHHHhhCCCCCcEEEcccCCCChhH--HHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056 214 QALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (414)
Q Consensus 214 ~~L~~~L~~n~~tLt~L~L~~~~L~~~~--m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL 291 (414)
.+....+.... .++.+++.++.+.... ++.+=..+.. -..++.|.+..+.+ + ..+ .+....+|
T Consensus 8 ~~~~~~~~~~~-~l~~l~l~~~~l~~~~~~l~~l~~~~~~----l~~L~~L~ls~n~l-~----~l~-----~~~~l~~L 72 (198)
T 1ds9_A 8 KDAIRIFEERK-SVVATEAEKVELHGMIPPIEKMDATLST----LKACKHLALSTNNI-E----KIS-----SLSGMENL 72 (198)
T ss_dssp HHHHHHHHHTT-CCCCTTCSEEECCBCCTTCCCCHHHHHH----TTTCSEEECSEEEE-S----CCC-----CHHHHTTC
T ss_pred HHHHHHHHhcc-cccCcchheeEeccccCcHhhhhHHHhc----CCCCCEEECCCCCC-c----ccc-----ccccCCCC
Confidence 33444444443 6666666666554431 1111001111 02355666666665 3 122 33445788
Q ss_pred cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHH--
Q 015056 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIA-- 364 (414)
Q Consensus 292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~-- 364 (414)
+.|+|++|++.+-. ..... .+ .|++|+|++|.|++ + ..+.... +|++|+|+ .+.
T Consensus 73 ~~L~l~~n~l~~l~--~~~~~---~~-~L~~L~L~~N~l~~---------l-~~~~~l~---~L~~L~l~~N~i~~~~~~ 133 (198)
T 1ds9_A 73 RILSLGRNLIKKIE--NLDAV---AD-TLEELWISYNQIAS---------L-SGIEKLV---NLRVLYMSNNKITNWGEI 133 (198)
T ss_dssp CEEEEEEEEECSCS--SHHHH---HH-HCSEEEEEEEECCC---------H-HHHHHHH---HSSEEEESEEECCCHHHH
T ss_pred CEEECCCCCccccc--chhhc---CC-cCCEEECcCCcCCc---------C-CccccCC---CCCEEECCCCcCCchhHH
Confidence 88888888886311 11111 13 68888888888887 2 1343333 38888884 222
Q ss_pred hhccccCCCceeEEEeecccCCchh------HHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ASLGKFFGTSVQVLNIGAIGLGSSG------FRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ~agvk~L~c~Lq~L~L~~c~lg~~g------cqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
+.+.+ -.+|+.|++++|.++... ......++...++|+.|| +|.|
T Consensus 134 ~~l~~--l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 134 DKLAA--LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHTT--TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred HHHhc--CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 23444 567888888888886653 345566777788888887 4544
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=2.9e-06 Score=77.26 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=74.7
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA-- 364 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~-- 364 (414)
.+|+.|+|++|.+..-.. ..+...+ +|++|+|++|.|+. ..- .++.. +.+|++|+|+ .+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~----i~~----~~~~~---l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP----GVFDSLI-NLKELYLGSNQLGA----LPV----GVFDS---LTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCccCH----HHhhCcc-CCcEEECCCCCCCC----cCh----hhccc---CCCcCEEECCCCcCCcc
Confidence 889999999999976432 2234445 89999999999987 222 23333 3459999995 222
Q ss_pred --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
..+.. -.+|+.|+|++|.++.. ...+...++|++|+|++|+|+
T Consensus 104 ~~~~~~~--l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 104 PSAVFDR--LVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCC
T ss_pred ChhHhCc--chhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCC
Confidence 11223 57899999999999943 345677899999999999984
No 115
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.14 E-value=6.7e-07 Score=80.90 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=93.0
Q ss_pred hCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccc-cccccCCCcccHHHHHHHHhcCCcccEEEccCC
Q 015056 222 QNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (414)
Q Consensus 222 ~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t-c~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N 299 (414)
++.++|++|+|++|. +..-.-. ++. .--.++.+.+.. ..+ + ..+ ..++....+|+.|+|++|
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~----~f~----~l~~L~~L~l~~~n~l-~----~i~---~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESH----SFY----NLSKVTHIEIRNTRNL-T----YID---PDALKELPLLKFLGIFNT 115 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTT----TEE----SCTTCCEEEEEEETTC-C----EEC---TTSEECCTTCCEEEEEEE
T ss_pred cCCCCCcEEeCCCCCCcceeCHh----HcC----CCcCCcEEECCCCCCe-e----EcC---HHHhCCCCCCCEEeCCCC
Confidence 445689999999996 6432110 010 012477777776 444 3 111 124456788999999999
Q ss_pred CCCchhHHHHHHHhccCCCCcc---EEeccCC-CCCCcccccCCCChhhhhhcCcccCCcc-eeehH-----HHHhhccc
Q 015056 300 HLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLR-LLNLS-----HIAASLGK 369 (414)
Q Consensus 300 ~L~d~gaklL~~~Ll~~~C~L~---~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~-~LnLs-----~l~~agvk 369 (414)
++..-. .+...+ .|+ +|+|++| .|++ ..- .++.. +.+|+ +|+|+ .+......
T Consensus 116 ~l~~lp------~~~~l~-~L~~L~~L~l~~N~~l~~----i~~----~~~~~---l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 116 GLKMFP------DLTKVY-STDIFFILEITDNPYMTS----IPV----NAFQG---LCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp CCCSCC------CCTTCC-BCCSEEEEEEESCTTCCE----ECT----TTTTT---TBSSEEEEECCSCCCCEECTTTTT
T ss_pred CCcccc------cccccc-ccccccEEECCCCcchhh----cCc----ccccc---hhcceeEEEcCCCCCcccCHhhcC
Confidence 886522 133333 666 9999999 8886 222 13333 33488 88884 22222222
Q ss_pred cCCCceeEEEeeccc-CCchhHHHHHHHHhcC-CCCcEEecCCCCCC
Q 015056 370 FFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKE-LKLVNINIRFKPIS 414 (414)
Q Consensus 370 ~L~c~Lq~L~L~~c~-lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i~ 414 (414)
..+|+.|+|++|. ++...-.+ +..- ++|++||+++|+|+
T Consensus 178 --~~~L~~L~L~~n~~l~~i~~~~----~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 178 --GTKLDAVYLNKNKYLTVIDKDA----FGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp --TCEEEEEECTTCTTCCEECTTT----TTTCSBCCSEEECTTCCCC
T ss_pred --CCCCCEEEcCCCCCcccCCHHH----hhccccCCcEEECCCCccc
Confidence 4689999999995 87644332 2333 78999999999874
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.13 E-value=1.7e-06 Score=91.76 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.0
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+|+.|+|++|.|+. +-..+...++|+.|+|++|.|+
T Consensus 261 ~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 261 SGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCC
T ss_pred ccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCC
Confidence 456677777777663 2234566677778888877764
No 117
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=8.4e-07 Score=97.78 Aligned_cols=37 Identities=8% Similarity=0.317 Sum_probs=20.3
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~ 302 (414)
.++.|.+..+.+ + ..+.. ++....+|+.|+|++|++.
T Consensus 674 ~L~~L~Ls~N~L-~----~lp~~---~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 674 NASTVTLSYNEI-Q----KFPTE---LFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CEEEEECCSSCC-C----SCCHH---HHHTTCCCSEEECCSCCCS
T ss_pred CcCEEEccCCcC-C----ccCHH---HHccCCCCCEEECCCCcCC
Confidence 466666666665 3 23322 2334566666666666665
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.13 E-value=1.9e-06 Score=90.59 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=91.0
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|+|++|.+.. +. + .--+++.|.+..+.+ + .++. + .. +|++|+|++|++..-
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~-------~l~~L~~L~Ls~N~l-~----~ip~-l----~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---E-------LPASLEYLDACDNRL-S----TLPE-L----PA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---C-------CCTTCCEEECCSSCC-S----CCCC-C----CT--TCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCCCcc--cc---c-------ccCCCCEEEccCCCC-C----Ccch-h----hc--CCCEEECCCCcCCCC
Confidence 479999999998873 21 1 113588888888877 5 2332 2 11 899999999998652
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCceeEEEeec
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGA 382 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~Lq~L~L~~ 382 (414)
.. ..+ +|+.|+|++|.|++ + .. .+.+|++|+|+ .+.. +.. +..+|+.|+|++
T Consensus 136 p~--------~l~-~L~~L~Ls~N~l~~-l---p~-----------~l~~L~~L~Ls~N~L~~-lp~-l~~~L~~L~Ls~ 189 (571)
T 3cvr_A 136 PE--------LPA-LLEYINADNNQLTM-L---PE-----------LPTSLEVLSVRNNQLTF-LPE-LPESLEALDVST 189 (571)
T ss_dssp CC--------CCT-TCCEEECCSSCCSC-C---CC-----------CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred CC--------cCc-cccEEeCCCCccCc-C---CC-----------cCCCcCEEECCCCCCCC-cch-hhCCCCEEECcC
Confidence 11 234 89999999999997 2 11 12358899995 3332 222 348999999999
Q ss_pred ccCCchhHHHHHHHH-hcCCCCcEEecCCCCCC
Q 015056 383 IGLGSSGFRVLQDGV-TKELKLVNINIRFKPIS 414 (414)
Q Consensus 383 c~lg~~gcqaLa~aL-~~N~~L~~LdLs~N~i~ 414 (414)
|.|+.-.. +...| ..+.+|++|++++|+|+
T Consensus 190 N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 190 NLLESLPA--VPVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SCCSSCCC--CC--------CCEEEECCSSCCC
T ss_pred CCCCchhh--HHHhhhcccccceEEecCCCcce
Confidence 99986433 22222 23344599999999985
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=1.6e-06 Score=78.69 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=56.8
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA 364 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~ 364 (414)
...+|+.|+|++|++..-.. .++...+ .|++|+|++|.|+. ..-+ ++.. +.+|++|+|+ .+.
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~----~~~~~l~-~L~~L~Ls~N~l~~----l~~~----~f~~---l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAP----DAFQGLR-SLNSLVLYGNKITE----LPKS----LFEG---LFSLQLLLLNANKIN 117 (220)
T ss_dssp TCTTCCEEECCSSCCCEECT----TTTTTCS-SCCEEECCSSCCCC----CCTT----TTTT---CTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCCcCH----HHhhCCc-CCCEEECCCCcCCc----cCHh----HccC---CCCCCEEECCCCCCC
Confidence 34567777777777653211 1223333 67777777777765 2111 2222 2336677764 111
Q ss_pred ----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++... -.+|+.|+|++|.++..... ++..-++|++|+|++|.+
T Consensus 118 ~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 118 CLRVDAFQD--LHNLNLLSLYDNKLQTIAKG----TFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTT--CTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCE
T ss_pred EeCHHHcCC--CCCCCEEECCCCcCCEECHH----HHhCCCCCCEEEeCCCCc
Confidence 12222 35677777777777664422 334456677777777764
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.07 E-value=1e-06 Score=94.40 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH
Q 015056 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (414)
Q Consensus 282 as~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs 361 (414)
...+....+|+.|+|++|++..-. ..+...+ .|++|+|++|.|+. +...+.... +|++|+|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~~l~-~L~~L~Ls~N~l~~---------lp~~~~~l~---~L~~L~Ls 278 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNIS-----ANIFKYD-FLTRLYLNGNSLTE---------LPAEIKNLS---NLRVLDLS 278 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCC-----GGGGGCC-SCSCCBCTTSCCSC---------CCGGGGGGT---TCCEEECT
T ss_pred hhhhccCCCCcEEECCCCCCCCCC-----hhhcCCC-CCCEEEeeCCcCcc---------cChhhhCCC---CCCEEeCc
Confidence 334555666777777777765211 1222334 67777777777764 112332223 36667664
Q ss_pred -----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 362 -----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 362 -----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+-..+.. -.+|+.|+|++|.|+.. -..+..-++|++|+|++|.|+
T Consensus 279 ~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 279 HNRLTSLPAELGS--CFQLKYFYFFDNMVTTL-----PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TSCCSSCCSSGGG--GTTCSEEECCSSCCCCC-----CSSTTSCTTCCCEECTTSCCC
T ss_pred CCcCCccChhhcC--CCCCCEEECCCCCCCcc-----ChhhhcCCCccEEeCCCCccC
Confidence 22122222 35667777777776532 222444466777777777663
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.04 E-value=1.9e-06 Score=74.83 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=73.8
Q ss_pred cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA 364 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~ 364 (414)
...+|+.|+|++|++..- ..+....-+|+.|+|++|.|++ . . .+. ++.+|++|+|+ .+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls~N~l~~----~--~----~l~---~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRK----L--D----GFP---LLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CTTSCEEEECTTSCCCSC------CCGGGGTTCCSEEECCSSCCCE----E--C----CCC---CCSSCCEEECCSSCCC
T ss_pred CcCCceEEEeeCCCCchh------HHhhhcCCCCCEEECCCCCCCc----c--c----ccc---cCCCCCEEECCCCccc
Confidence 457899999999999742 2233322289999999999998 2 2 332 33459999995 222
Q ss_pred h---h-ccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 365 A---S-LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 365 ~---a-gvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
. . ... -.+|+.|+|++|.+++... -..+..-++|++|++++|.|+
T Consensus 78 ~~~~~~~~~--l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 78 RIGEGLDQA--LPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECSCHHHH--CTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGG
T ss_pred ccCcchhhc--CCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCC
Confidence 1 1 123 5689999999999987443 124667789999999999873
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.03 E-value=4.1e-06 Score=81.10 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=86.1
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHh-cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Ls-sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~ 336 (414)
.++.|.+....+ + ... ...+. ...+|+.|+|++|++..-... ++...+ .|++|+|++|.|+.
T Consensus 40 ~l~~L~Ls~N~l-~----~l~---~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~-~L~~L~Ls~N~l~~---- 102 (361)
T 2xot_A 40 YTALLDLSHNNL-S----RLR---AEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVP-NLRYLDLSSNHLHT---- 102 (361)
T ss_dssp TCSEEECCSSCC-C----EEC---TTSSSSCCTTCCEEECCSSCCCEECTT----TTTTCT-TCCEEECCSSCCCE----
T ss_pred CCCEEECCCCCC-C----ccC---hhhhhhcccccCEEECCCCcCCccChh----hccCCC-CCCEEECCCCcCCc----
Confidence 367888887776 4 122 12233 668999999999999754322 344455 89999999999997
Q ss_pred cCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056 337 YDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF 410 (414)
Q Consensus 337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~ 410 (414)
..- .++.. +.+|++|+|+ .+ .++... -.+|+.|+|++|.|+......+.. +..-++|++|||++
T Consensus 103 ~~~----~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~-~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 103 LDE----FLFSD---LQALEVLLLYNNHIVVVDRNAFED--MAQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSS 172 (361)
T ss_dssp ECT----TTTTT---CTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCS
T ss_pred CCH----HHhCC---CcCCCEEECCCCcccEECHHHhCC--cccCCEEECCCCcCCeeCHHHhcC-cccCCcCCEEECCC
Confidence 222 23433 3459999995 22 223334 578999999999999744322211 13457899999999
Q ss_pred CCCC
Q 015056 411 KPIS 414 (414)
Q Consensus 411 N~i~ 414 (414)
|+|+
T Consensus 173 N~l~ 176 (361)
T 2xot_A 173 NKLK 176 (361)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9984
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.99 E-value=1.5e-05 Score=84.47 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=29.7
Q ss_pred CcceeehH--HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 354 SLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 354 ~L~~LnLs--~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+|++|+|+ .+..-- ..-.+|+.|+|++|.|+.-.. .-++|++|+|++|.|+
T Consensus 222 ~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp TCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCC
T ss_pred CCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCC
Confidence 46777774 221100 113567788888877775322 2356778888887764
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.96 E-value=6.4e-06 Score=83.05 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=50.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
.+|++|++++|.+..-. ..+ -+++.|.+..+.+ + +.+ .+....+|+.|+|++|++..-
T Consensus 111 ~~L~~L~l~~n~l~~l~--------~~~----~~L~~L~L~~n~l-~----~lp-----~~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS--------DLP----PLLEYLGVSNNQL-E----KLP-----ELQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp TTCCEEECCSSCCSCCC--------SCC----TTCCEEECCSSCC-S----SCC-----CCTTCTTCCEEECCSSCCSCC
T ss_pred CCCcEEECCCCccCccc--------CCC----CCCCEEECcCCCC-C----CCc-----ccCCCCCCCEEECCCCcCccc
Confidence 47888888888775411 001 2577888887776 4 232 156778888888888888641
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
. ....+|++|+|++|.|++
T Consensus 169 p---------~~~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 169 P---------DLPPSLEFIAAGNNQLEE 187 (454)
T ss_dssp C---------CCCTTCCEEECCSSCCSS
T ss_pred C---------CCcccccEEECcCCcCCc
Confidence 1 112378888888888886
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.3e-06 Score=77.07 Aligned_cols=98 Identities=5% Similarity=-0.058 Sum_probs=60.6
Q ss_pred CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcc-cCCcceeehH---H
Q 015056 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKS-LQSLRLLNLS---H 362 (414)
Q Consensus 288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks-~~~L~~LnLs---~ 362 (414)
+-.|++|+|+++.+.|+|++.| ..-+ .|++|+|++| .||+++ + .+|+...+ ..+|++|||+ .
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L----~~~~-~L~~L~L~~C~~ItD~g-------L-~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM----EGLQ-YVEKIRLCKCHYIEDGC-------L-ERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG----TTCS-CCCEEEEESCTTCCHHH-------H-HHHHTCHHHHHHCCEEEEESCTT
T ss_pred CceEeEEeCcCCCccHHHHHHh----cCCC-CCCEEEeCCCCccCHHH-------H-HHHHhcccccCCCCEEEcCCCCc
Confidence 3467777777777777777653 3334 7777778777 477711 2 34444321 1137777774 3
Q ss_pred HHhhccccC--CCceeEEEeeccc-CCchh--HHHHHHHHh
Q 015056 363 IAASLGKFF--GTSVQVLNIGAIG-LGSSG--FRVLQDGVT 398 (414)
Q Consensus 363 l~~agvk~L--~c~Lq~L~L~~c~-lg~~g--cqaLa~aL~ 398 (414)
|-|+|.+.| -.+|++|+|++|. +|+.| .+.|.++|.
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP 167 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLP 167 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCT
T ss_pred CCHHHHHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCC
Confidence 445444444 4678889998885 77765 456655554
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.90 E-value=6.4e-06 Score=83.02 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=58.3
Q ss_pred ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (414)
Q Consensus 197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~ 275 (414)
.+|+.|.+++. .+. .. . ..+.++|++|++++|.+.. +. . .-..++.|.+..+.+ +
T Consensus 131 ~~L~~L~L~~n~l~~--lp----~-~~~l~~L~~L~l~~N~l~~--lp---------~-~~~~L~~L~L~~n~l-~---- 186 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP----E-LQNSSFLKIIDVDNNSLKK--LP---------D-LPPSLEFIAAGNNQL-E---- 186 (454)
T ss_dssp TTCCEEECCSSCCSS--CC----C-CTTCTTCCEEECCSSCCSC--CC---------C-CCTTCCEEECCSSCC-S----
T ss_pred CCCCEEECcCCCCCC--Cc----c-cCCCCCCCEEECCCCcCcc--cC---------C-CcccccEEECcCCcC-C----
Confidence 35666666655 221 11 1 3555688888888887753 11 0 012577888887776 4
Q ss_pred ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
..+ .+....+|+.|+|++|++..-. ...-+|++|+|++|.|+.
T Consensus 187 ~l~-----~~~~l~~L~~L~l~~N~l~~l~---------~~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 187 ELP-----ELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILEE 229 (454)
T ss_dssp SCC-----CCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCSS
T ss_pred cCc-----cccCCCCCCEEECCCCcCCcCC---------CCcCcccEEECcCCcCCc
Confidence 122 1466778888888888775311 111277777777777774
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=4.3e-06 Score=72.33 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=8.2
Q ss_pred cCCcccEEEccCCCCC
Q 015056 287 SGRSLCSLKLRHCHLD 302 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~ 302 (414)
...+|++|+|++|.+.
T Consensus 50 ~l~~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQ 65 (177)
T ss_dssp TCTTCSEEECCSSCCC
T ss_pred CcccccEEECCCCcce
Confidence 3445555555555554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=4.7e-06 Score=73.80 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=19.1
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+|+.|+|++|.++...- .++..-++|++|++++|.+
T Consensus 102 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCB
T ss_pred CCCCEEECCCCcCCeeCH----HHhhcCCCCCEEEeCCCCc
Confidence 455666666666554221 1223345566666666654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.90 E-value=1.5e-05 Score=71.10 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA-- 364 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~-- 364 (414)
++|+.|+|++|.+..-. ..+.+.+ .|++|+|++|.|++ ..- .++.... +|++|+|+ .+.
T Consensus 31 ~~l~~L~L~~n~i~~ip-----~~~~~l~-~L~~L~Ls~N~i~~----i~~----~~f~~l~---~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-----KELSNYK-HLTLIDLSNNRIST----LSN----QSFSNMT---QLLTLILSYNRLRCI 93 (193)
T ss_dssp TTCCEEECCSSCCCSCC-----GGGGGCT-TCCEEECCSSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCcCchhH-----HHhhccc-CCCEEECCCCcCCE----eCH----hHccCCC---CCCEEECCCCccCEe
Confidence 35667777777665211 2344444 66777777777765 111 1332222 36666663 111
Q ss_pred --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++... -.+|+.|+|++|.++.... .++..-++|++|++++|.+
T Consensus 94 ~~~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 94 PPRTFDG--LKSLRLLSLHGNDISVVPE----GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECCSSCE
T ss_pred CHHHhCC--CCCCCEEECCCCCCCeeCh----hhhhcCccccEEEeCCCCe
Confidence 12222 3567777777777764322 1233446677777777764
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.89 E-value=9.4e-06 Score=73.54 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=74.3
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA- 365 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~- 365 (414)
.+|+.|+|++|.+..-.. .++...+ .|++|+|++|.|++ ..- .++.... +|++|+|+ .+..
T Consensus 32 ~~l~~L~l~~n~i~~i~~----~~~~~l~-~L~~L~Ls~N~i~~----~~~----~~~~~l~---~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP----GAFSPYK-KLRRIDLSNNQISE----LAP----DAFQGLR---SLNSLVLYGNKITEL 95 (220)
T ss_dssp TTCCEEECCSSCCCEECT----TSSTTCT-TCCEEECCSSCCCE----ECT----TTTTTCS---SCCEEECCSSCCCCC
T ss_pred cCCCEEECCCCcCCCcCH----hHhhCCC-CCCEEECCCCcCCC----cCH----HHhhCCc---CCCEEECCCCcCCcc
Confidence 689999999999975332 1233444 89999999999997 212 2443334 49999995 2221
Q ss_pred ---hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 366 ---SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 366 ---agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.... -.+|+.|+|++|.++.... .++..-++|++|+|++|+|+
T Consensus 96 ~~~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 96 PKSLFEG--LFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred CHhHccC--CCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCC
Confidence 1122 4789999999999987543 34556789999999999874
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=3.9e-06 Score=76.63 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=61.3
Q ss_pred CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---HHHhhccccCC------CceeEEEeeccc-CCch
Q 015056 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFFG------TSVQVLNIGAIG-LGSS 388 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~agvk~L~------c~Lq~L~L~~c~-lg~~ 388 (414)
.|++||||+|.||+ -+ + .+|. .+.+|++|+|+ .+.|++.+.+. .+|++|+|++|. +|+.
T Consensus 62 ~L~~LDLs~~~Itd------~G-L-~~L~---~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMS------IG-F-DHME---GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCG------GG-G-GGGT---TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccH------HH-H-HHhc---CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 79999999999998 22 2 3453 45569999995 56676666662 269999999995 9999
Q ss_pred hHHHHHHHHhcCCCCcEEecCCC
Q 015056 389 GFRVLQDGVTKELKLVNINIRFK 411 (414)
Q Consensus 389 gcqaLa~aL~~N~~L~~LdLs~N 411 (414)
|-++|+. -++|++|+|++-
T Consensus 131 Gl~~L~~----~~~L~~L~L~~c 149 (176)
T 3e4g_A 131 GIIALHH----FRNLKYLFLSDL 149 (176)
T ss_dssp HHHHGGG----CTTCCEEEEESC
T ss_pred HHHHHhc----CCCCCEEECCCC
Confidence 9998763 489999999874
No 132
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.85 E-value=2.2e-06 Score=77.48 Aligned_cols=152 Identities=12% Similarity=0.143 Sum_probs=95.8
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCcccHHHHHHHHhcCCcccEEEccC-CCCC
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD 302 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~-N~L~ 302 (414)
++|++|+|++|.+..-.-. ++.. --+++.+.+..+. + + ... ...+....+|++|+|++ |++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~----~~~~----l~~L~~L~l~~n~~l-~----~i~---~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH----AFSN----LPNISRIYVSIDVTL-Q----QLE---SHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSEECTT----TTTT----CTTCCEEEEECCSSC-C----EEC---TTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceEECHH----HccC----CCCCcEEeCCCCCCc-c----eeC---HhHcCCCcCCcEEECCCCCCee
Confidence 3789999999987653211 1111 1347888888775 4 3 111 12456778999999999 9986
Q ss_pred chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---HHHh----hccccCCCce
Q 015056 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAA----SLGKFFGTSV 375 (414)
Q Consensus 303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~----agvk~L~c~L 375 (414)
.-.. .++...+ +|++|+|++|.|++ . . .+....++..|++|+|+ .+.. +..+ -.+|
T Consensus 95 ~i~~----~~f~~l~-~L~~L~l~~n~l~~----l--p----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--l~~L 157 (239)
T 2xwt_C 95 YIDP----DALKELP-LLKFLGIFNTGLKM----F--P----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG--LCNE 157 (239)
T ss_dssp EECT----TSEECCT-TCCEEEEEEECCCS----C--C----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT--TBSS
T ss_pred EcCH----HHhCCCC-CCCEEeCCCCCCcc----c--c----ccccccccccccEEECCCCcchhhcCcccccc--hhcc
Confidence 4321 1223334 89999999999997 1 1 13233342224488884 2211 1222 4678
Q ss_pred e-EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC-CC
Q 015056 376 Q-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP-IS 414 (414)
Q Consensus 376 q-~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~-i~ 414 (414)
+ +|++++|+++.-... +. ...+|++|++++|+ |+
T Consensus 158 ~~~L~l~~n~l~~i~~~----~~-~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGY----AF-NGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp EEEEECCSCCCCEECTT----TT-TTCEEEEEECTTCTTCC
T ss_pred eeEEEcCCCCCcccCHh----hc-CCCCCCEEEcCCCCCcc
Confidence 9 999999999865432 22 23689999999994 63
No 133
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.82 E-value=1.2e-05 Score=71.06 Aligned_cols=104 Identities=22% Similarity=0.165 Sum_probs=70.8
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA- 365 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~- 365 (414)
.+|++|+|++|.+..-... .+...+ +|++|+|++|.|++ ..- .++... .+|++|+|+ .+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG----VFDELT-SLTQLYLGGNKLQS----LPN----GVFNKL---TSLTYLNLSTNQLQSL 91 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCT-TCSEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCC
T ss_pred CCCcEEEcCCCccCcCChh----hhcccc-cCcEEECCCCccCc----cCh----hhcCCC---CCcCEEECCCCcCCcc
Confidence 5789999999998743322 123344 89999999999987 211 233333 348888885 2221
Q ss_pred ---hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 366 ---SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 366 ---agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+.+ -.+|+.|+|++|.++.... .++..-++|++|++++|+|+
T Consensus 92 ~~~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 92 PNGVFDK--LTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred CHhHhcC--ccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccc
Confidence 1223 5689999999999986442 23456689999999999874
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.82 E-value=1.3e-06 Score=77.42 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=76.1
Q ss_pred CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (414)
Q Consensus 225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ 304 (414)
++|++|+|++|.+..- ..+. .+ .+++.|.+..+.+ + ..+ ..+....+|+.|+|++|++..-
T Consensus 48 ~~L~~L~ls~n~l~~l--~~~~-~l-------~~L~~L~l~~n~l-~----~l~----~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 48 KACKHLALSTNNIEKI--SSLS-GM-------ENLRILSLGRNLI-K----KIE----NLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp TTCSEEECSEEEESCC--CCHH-HH-------TTCCEEEEEEEEE-C----SCS----SHHHHHHHCSEEEEEEEECCCH
T ss_pred CCCCEEECCCCCCccc--cccc-cC-------CCCCEEECCCCCc-c----ccc----chhhcCCcCCEEECcCCcCCcC
Confidence 5788888888877652 1111 11 2366777777766 4 122 2333346899999999999762
Q ss_pred hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhh--------------cc
Q 015056 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAAS--------------LG 368 (414)
Q Consensus 305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~a--------------gv 368 (414)
..+...+ .|+.|+|++|.|+++-. . ..+.... +|++|+|+ .+... ..
T Consensus 109 ------~~~~~l~-~L~~L~l~~N~i~~~~~------~-~~l~~l~---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 109 ------SGIEKLV-NLRVLYMSNNKITNWGE------I-DKLAALD---KLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp ------HHHHHHH-HSSEEEESEEECCCHHH------H-HHHTTTT---TCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred ------CccccCC-CCCEEECCCCcCCchhH------H-HHHhcCC---CCCEEEecCCccccccccccchHHHHHHHHH
Confidence 2344444 79999999999987211 1 2443334 48999995 33222 33
Q ss_pred ccCCCceeEEEeecccCCc
Q 015056 369 KFFGTSVQVLNIGAIGLGS 387 (414)
Q Consensus 369 k~L~c~Lq~L~L~~c~lg~ 387 (414)
. -.+|+.|| ++.++.
T Consensus 172 ~--l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 R--LPNLKKLD--GMPVDV 186 (198)
T ss_dssp H--CSSCSEEC--CGGGTT
T ss_pred h--CCCcEEEC--CcccCH
Confidence 3 67889988 666665
No 135
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.75 E-value=2.1e-05 Score=78.90 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=82.9
Q ss_pred ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (414)
Q Consensus 258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~ 337 (414)
.+++|.+..-.+ + +++ ...+....+|++|+|++|++..-.. .++...+ +|++|+|++|.|++ .
T Consensus 53 ~~~~LdLs~N~i-~----~l~---~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~-~L~~L~Ls~N~l~~----l 115 (635)
T 4g8a_A 53 STKNLDLSFNPL-R----HLG---SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLS-HLSTLILTGNPIQS----L 115 (635)
T ss_dssp TCCEEECTTSCC-C----EEC---TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCT-TCCEEECTTCCCCE----E
T ss_pred CCCEEEeeCCCC-C----CCC---HHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCC-CCCEEEccCCcCCC----C
Confidence 467888876655 3 222 2345677899999999998853111 1233344 89999999999987 2
Q ss_pred CCCChhhhhhcCcccCCcceeehH--HH---Hh-hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056 338 DRSGPLFSLGAGKSLQSLRLLNLS--HI---AA-SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFK 411 (414)
Q Consensus 338 ~c~~ls~aL~~nks~~~L~~LnLs--~l---~~-agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N 411 (414)
.- .++.... +|++|+|+ .+ .. +..+ -.+|++|+|++|.++... +...+..-++|++|++++|
T Consensus 116 ~~----~~f~~L~---~L~~L~Ls~N~l~~l~~~~~~~--L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 116 AL----GAFSGLS---SLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CG----GGGTTCT---TCCEEECTTSCCCCSTTCCCTT--CTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSS
T ss_pred CH----HHhcCCC---CCCEEECCCCcCCCCChhhhhc--CcccCeeccccCccccCC---CchhhccchhhhhhcccCc
Confidence 21 2453334 49999995 22 11 2233 478999999999987532 1123444578999999999
Q ss_pred CCC
Q 015056 412 PIS 414 (414)
Q Consensus 412 ~i~ 414 (414)
+|.
T Consensus 184 ~l~ 186 (635)
T 4g8a_A 184 KIQ 186 (635)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=71.49 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=73.3
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH---
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI--- 363 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l--- 363 (414)
..++.|+|++|.+..-... ..+...+ .|++|+|++|.|++ ..- .++.... +|++|+|+ .+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~---~~~~~l~-~L~~L~L~~N~i~~----i~~----~~~~~l~---~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT---GIFKKLP-QLRKINFSNNKITD----IEE----GAFEGAS---GVNEILLTSNRLENV 96 (220)
T ss_dssp TTCSEEECCSSCCCEECCC---CCGGGCT-TCCEEECCSSCCCE----ECT----TTTTTCT---TCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCcCCccCch---hhhccCC-CCCEEECCCCcCCE----ECH----HHhCCCC---CCCEEECCCCccCcc
Confidence 4568999999999754211 0123444 89999999999997 222 2443334 49999995 22
Q ss_pred -HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 364 -AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 364 -~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.++... -.+|++|+|++|.++...- .++..-++|++|+|++|+|+
T Consensus 97 ~~~~~~~--l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 97 QHKMFKG--LESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CGGGGTT--CSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCC
T ss_pred CHhHhcC--CcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCC
Confidence 222333 5789999999999987543 23456688999999999884
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=3.1e-05 Score=80.88 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=66.5
Q ss_pred cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHH
Q 015056 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIA 364 (414)
Q Consensus 290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~ 364 (414)
.|+.|+|++|.+..- ..+...+ +|++|+|++|.|+. +...+.... +|++|+|+ .+-
T Consensus 442 ~L~~L~Ls~n~l~~l------p~~~~l~-~L~~L~Ls~N~l~~---------lp~~~~~l~---~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL------CHLEQLL-LVTHLDLSHNRLRA---------LPPALAALR---CLEVLQASDNALENVD 502 (567)
T ss_dssp TCSEEECTTSCCSSC------CCGGGGT-TCCEEECCSSCCCC---------CCGGGGGCT---TCCEEECCSSCCCCCG
T ss_pred CceEEEecCCCCCCC------cCccccc-cCcEeecCcccccc---------cchhhhcCC---CCCEEECCCCCCCCCc
Confidence 588899999888642 1244444 78889999998886 223444334 48888884 222
Q ss_pred hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+.. -.+|+.|+|++|.++.... -..+..-++|++|+|++|+|
T Consensus 503 -~l~~--l~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -GVAN--LPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -GGTT--CSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGG
T ss_pred -ccCC--CCCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcC
Confidence 3333 5678899999998876530 23345667899999998876
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.60 E-value=5e-05 Score=66.17 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=65.8
Q ss_pred cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (414)
Q Consensus 257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~ 336 (414)
|..+.+.+....+ + +++.++ ..+|+.|+|++|.+..-.. ..+...+ +|++|+|++|+|++
T Consensus 9 C~~~~l~~s~n~l-~----~ip~~~------~~~l~~L~L~~N~i~~~~~----~~~~~l~-~L~~L~Ls~N~l~~---- 68 (170)
T 3g39_A 9 CSGTTVDCSGKSL-A----SVPTGI------PTTTQVLYLYDNQITKLEP----GVFDRLT-QLTRLDLDNNQLTV---- 68 (170)
T ss_dssp EETTEEECTTSCC-S----SCCSCC------CTTCSEEECCSSCCCCCCT----TTTTTCT-TCSEEECCSSCCCC----
T ss_pred cCCCEEEeCCCCc-C----ccCccC------CCCCcEEEcCCCcCCccCh----hhhcCcc-cCCEEECCCCCcCc----
Confidence 5555666655554 3 233222 2677888888887754211 1122333 78888888888876
Q ss_pred cCCCChhhhhhcCcccCCcceeehH--HHH---h-hccccCCCceeEEEeecccCCchh--HHHHHHHHhcCCCCc
Q 015056 337 YDRSGPLFSLGAGKSLQSLRLLNLS--HIA---A-SLGKFFGTSVQVLNIGAIGLGSSG--FRVLQDGVTKELKLV 404 (414)
Q Consensus 337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l~---~-agvk~L~c~Lq~L~L~~c~lg~~g--cqaLa~aL~~N~~L~ 404 (414)
..- .++.. +.+|++|+|+ .+. . +... -.+|+.|+|++|.+.-.+ -..+..-+..+..+.
T Consensus 69 l~~----~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 69 LPA----GVFDK---LTQLTQLSLNDNQLKSIPRGAFDN--LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCh----hhccC---CCCCCEEECCCCccCEeCHHHhcC--CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 211 12322 2347777774 111 1 1222 356777777777776553 456666666665554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.42 E-value=0.00022 Score=63.41 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=68.9
Q ss_pred cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----h
Q 015056 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----A 365 (414)
Q Consensus 292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~ 365 (414)
+.+++++|.+..-.. .+ ++ +|++|+|++|.|+. .. .++.... +|++|+|+ .+. +
T Consensus 13 ~~l~~~~~~l~~ip~-----~~--~~-~l~~L~L~~n~i~~----ip-----~~~~~l~---~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----GI--PR-DVTELYLDGNQFTL----VP-----KELSNYK---HLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTSCCSSCCS-----CC--CT-TCCEEECCSSCCCS----CC-----GGGGGCT---TCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCCCCCcCCC-----CC--CC-CCCEEECCCCcCch----hH-----HHhhccc---CCCEEECCCCcCCEeCHh
Confidence 578899988864221 11 23 89999999999997 21 3454444 49999995 222 2
Q ss_pred hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 366 agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+... -.+|++|+|++|.++.... .++..-++|++|+|++|+|+
T Consensus 73 ~f~~--l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 73 SFSN--MTQLLTLILSYNRLRCIPP----RTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TTTT--CTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred HccC--CCCCCEEECCCCccCEeCH----HHhCCCCCCCEEECCCCCCC
Confidence 2333 5789999999999998553 24556789999999999984
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.41 E-value=8.9e-05 Score=63.98 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=82.4
Q ss_pred cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (414)
Q Consensus 257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~ 336 (414)
|..+.+......+ + +.+.+ ...+|+.|+|++|++..-... .+...+ .|++|+|++|.|++
T Consensus 7 C~~~~l~~~~~~l-~----~~p~~------~~~~l~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~---- 66 (177)
T 2o6r_A 7 CSGTEIRCNSKGL-T----SVPTG------IPSSATRLELESNKLQSLPHG----VFDKLT-QLTKLSLSQNQIQS---- 66 (177)
T ss_dssp EETTEEECCSSCC-S----SCCTT------CCTTCSEEECCSSCCCCCCTT----TTTTCT-TCSEEECCSSCCCC----
T ss_pred eCCCEEEecCCCC-c----cCCCC------CCCCCcEEEeCCCcccEeCHH----HhcCcc-cccEEECCCCcceE----
Confidence 5555666655554 3 22222 136899999999999743221 123334 89999999999997
Q ss_pred cCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056 337 YDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP 412 (414)
Q Consensus 337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~ 412 (414)
..- .++.. +.+|++|+|+ .+..-....+ -.+|+.|+|++|.++.... .++...++|++|++++|+
T Consensus 67 ~~~----~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 67 LPD----GVFDK---LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSC
T ss_pred eCh----hHccC---CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH----HHhcCCcccCEEEecCCC
Confidence 211 23333 3459999995 2221111111 4789999999999986432 334566899999999998
Q ss_pred CC
Q 015056 413 IS 414 (414)
Q Consensus 413 i~ 414 (414)
+.
T Consensus 136 ~~ 137 (177)
T 2o6r_A 136 WD 137 (177)
T ss_dssp BC
T ss_pred ee
Confidence 73
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.41 E-value=0.00013 Score=64.02 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=19.5
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
.+|+.|+|++|++..-.. ..+...+ .|++|+|++|.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP----GVFDHLV-NLQQLYFNSNKLTA 71 (174)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC
T ss_pred CCCcEEEeCCCCccccCH----HHhcCCc-CCCEEECCCCCCCc
Confidence 456666666666543211 1122233 56666666666665
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.37 E-value=0.0002 Score=63.22 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=58.3
Q ss_pred cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----Hh
Q 015056 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AA 365 (414)
Q Consensus 292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~ 365 (414)
+.+++++|.+..--. .+ +. .+++|+|++|.|++ ..-. .++.... +|++|+|+ .+ .+
T Consensus 11 ~~l~~s~~~l~~ip~-----~~--~~-~l~~L~l~~n~i~~----~~~~---~~~~~l~---~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-----DI--PL-HTTELLLNDNELGR----ISSD---GLFGRLP---HLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TEEECTTSCCSSCCS-----CC--CT-TCSEEECCSCCCCS----BCCS---CSGGGCT---TCCEEECCSSCCCCBCTT
T ss_pred CEEEcCCCCcCcCcc-----CC--CC-CCCEEECCCCcCCc----cCCc---cccccCC---CCCEEECCCCCCCCcCHh
Confidence 466677766642111 00 22 67777777777765 1111 1232223 37777774 11 12
Q ss_pred hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 366 agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
+... -.+|+.|+|++|.++.... .++..-++|++|++++|+|+
T Consensus 73 ~~~~--l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 73 AFEG--ASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TTTT--CTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCC
T ss_pred HcCC--cccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCC
Confidence 2333 4678899999999887543 23455688999999999984
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.34 E-value=7.2e-05 Score=78.09 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=81.8
Q ss_pred cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccC
Q 015056 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338 (414)
Q Consensus 259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~ 338 (414)
++.|.+..+.+ + +.+ . +....+|+.|+|++|.+..- -..+...+ +|++|+|++|.|++
T Consensus 443 L~~L~Ls~n~l-~----~lp----~-~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~-~L~~L~Ls~N~l~~------ 500 (567)
T 1dce_A 443 VRVLHLAHKDL-T----VLC----H-LEQLLLVTHLDLSHNRLRAL-----PPALAALR-CLEVLQASDNALEN------ 500 (567)
T ss_dssp CSEEECTTSCC-S----SCC----C-GGGGTTCCEEECCSSCCCCC-----CGGGGGCT-TCCEEECCSSCCCC------
T ss_pred ceEEEecCCCC-C----CCc----C-ccccccCcEeecCccccccc-----chhhhcCC-CCCEEECCCCCCCC------
Confidence 67788888777 4 232 2 56778999999999999721 12455566 99999999999997
Q ss_pred CCChhhhhhcCcccCCcceeehH-----HH--HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEec
Q 015056 339 RSGPLFSLGAGKSLQSLRLLNLS-----HI--AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (414)
Q Consensus 339 c~~ls~aL~~nks~~~L~~LnLs-----~l--~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdL 408 (414)
+. .+.... +|++|+|+ .+ -+.+.. -.+|+.|+|++|.++..-- .+...+..-++|+.||+
T Consensus 501 ---lp-~l~~l~---~L~~L~Ls~N~l~~~~~p~~l~~--l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 ---VD-GVANLP---RLQELLLCNNRLQQSAAIQPLVS--CPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp ---CG-GGTTCS---SCCEEECCSSCCCSSSTTGGGGG--CTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred ---Cc-ccCCCC---CCcEEECCCCCCCCCCCcHHHhc--CCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 22 343334 59999995 22 344445 6789999999999976421 22233344578888875
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.28 E-value=0.00011 Score=78.84 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEEeec
Q 015056 308 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLNIGA 382 (414)
Q Consensus 308 lL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~ 382 (414)
+.-..+...+ .|++|+|++|.|+. +...+.. +.+|++|+|+ .+-..+.+ -.+|+.|+|++
T Consensus 215 ~~~~~~~~l~-~L~~L~Ls~n~l~~---------l~~~~~~---l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~Ls~ 279 (727)
T 4b8c_D 215 MPKDSKYDDQ-LWHALDLSNLQIFN---------ISANIFK---YDFLTRLYLNGNSLTELPAEIKN--LSNLRVLDLSH 279 (727)
T ss_dssp -------CCC-CCCEEECTTSCCSC---------CCGGGGG---CCSCSCCBCTTSCCSCCCGGGGG--GTTCCEEECTT
T ss_pred cChhhhccCC-CCcEEECCCCCCCC---------CChhhcC---CCCCCEEEeeCCcCcccChhhhC--CCCCCEEeCcC
Confidence 3344455555 89999999999986 2122322 3459999995 23333444 57899999999
Q ss_pred ccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 383 IGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 383 c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
|.|+. |-..+..-.+|++|+|++|.|+
T Consensus 280 N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 280 NRLTS-----LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp SCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred CcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence 99984 2334556688999999999885
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.09 E-value=0.00046 Score=60.02 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=59.4
Q ss_pred ccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----
Q 015056 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA---- 364 (414)
Q Consensus 291 L~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~---- 364 (414)
.+.+++++|.+..-.. .+ + -.|++|+|++|.|++ ..- .++.. +.+|++|+|+ .+.
T Consensus 11 ~~~l~~s~n~l~~ip~-----~~--~-~~l~~L~L~~N~i~~----~~~----~~~~~---l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-----GI--P-TTTQVLYLYDNQITK----LEP----GVFDR---LTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp TTEEECTTSCCSSCCS-----CC--C-TTCSEEECCSSCCCC----CCT----TTTTT---CTTCSEEECCSSCCCCCCT
T ss_pred CCEEEeCCCCcCccCc-----cC--C-CCCcEEEcCCCcCCc----cCh----hhhcC---cccCCEEECCCCCcCccCh
Confidence 4678888887754221 11 2 378888888888887 211 23333 3348888884 211
Q ss_pred hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++..+ -.+|+.|+|++|.|+..-- .++..-++|++|+|++|.+
T Consensus 72 ~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 72 GVFDK--LTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred hhccC--CCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCC
Confidence 11122 4578888888888875322 2344557788888888875
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.59 E-value=0.0003 Score=67.60 Aligned_cols=110 Identities=18% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccC-CCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS- 361 (414)
Q Consensus 284 ~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~-n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs- 361 (414)
++....+|+.|++++|++..-... ...+.. .+..|++++ +.|+. .... ++.... ..|+.|+|+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~-~l~~l~l~~~~~i~~----l~~~----~f~~~~--~~l~~L~L~~ 163 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDV----HKIHSL-QKVLLDIQDNINIHT----IERN----SFVGLS--FESVILWLNK 163 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCC----TTCCBS-SCEEEEEESCTTCCE----ECTT----SSTTSB--SSCEEEECCS
T ss_pred hhhhccccccccccccccccCCch----hhcccc-hhhhhhhcccccccc----cccc----chhhcc--hhhhhhcccc
Confidence 345667889999999887532211 011112 456677755 45554 1111 111111 135566663
Q ss_pred ----HHHhhccccCCCceeEEEeec-ccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056 362 ----HIAASLGKFFGTSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINIRFKPIS 414 (414)
Q Consensus 362 ----~l~~agvk~L~c~Lq~L~L~~-c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~ 414 (414)
.+...... .+++++|+++. |.++.--- .++..-++|++||+++|+|+
T Consensus 164 N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQEIHNSAFN--GTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCEECTTSST--TEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCCC
T ss_pred ccccCCChhhcc--ccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCcC
Confidence 22222222 56788888864 66665322 12344567888888888774
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.58 E-value=0.0015 Score=61.97 Aligned_cols=98 Identities=22% Similarity=0.118 Sum_probs=65.1
Q ss_pred HhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--
Q 015056 285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-- 361 (414)
Q Consensus 285 Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-- 361 (414)
|....+|+.|+|++ |++..-.. ..+.+.+ +|+.|+|++|+|++ ..- .++.... +|++|||+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~----~~~~~l~-~L~~L~l~~N~l~~----~~~----~~~~~l~---~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL----RDLRGLG-ELRNLTIVKSGLRF----VAP----DAFHFTP---RLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG----GGSCSCC-CCSEEECCSSCCCE----ECT----TGGGSCS---CCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCCCcCh----hHhcccc-CCCEEECCCCccce----eCH----HHhcCCc---CCCEEeCCCC
Confidence 67778999999996 99864322 2245556 89999999999997 222 2444444 49999995
Q ss_pred HHH---hhccccCCCceeEEEeecccCCchhH-HHHHHHHhcC
Q 015056 362 HIA---ASLGKFFGTSVQVLNIGAIGLGSSGF-RVLQDGVTKE 400 (414)
Q Consensus 362 ~l~---~agvk~L~c~Lq~L~L~~c~lg~~gc-qaLa~aL~~N 400 (414)
.+. ..... .-+|+.|+|.+|.+.-.+- ..+...++.+
T Consensus 91 ~l~~~~~~~~~--~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~ 131 (347)
T 2ifg_A 91 ALESLSWKTVQ--GLSLQELVLSGNPLHCSCALRWLQRWEEEG 131 (347)
T ss_dssp CCSCCCSTTTC--SCCCCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred ccceeCHHHcc--cCCceEEEeeCCCccCCCccHHHHHHHHhC
Confidence 222 11222 3349999999999986654 5555555443
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.54 E-value=0.0025 Score=60.41 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=47.8
Q ss_pred CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH----HHHhhccccCCCc-ee-EEEeecccCCchhHHH
Q 015056 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----HIAASLGKFFGTS-VQ-VLNIGAIGLGSSGFRV 392 (414)
Q Consensus 319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs----~l~~agvk~L~c~-Lq-~L~L~~c~lg~~gcqa 392 (414)
+|++|+|++|.|+. ... .++....+ |+.++|. .+++.. |-+|+ |+ +|+|.. .++.-+-
T Consensus 227 ~L~~l~L~~n~i~~----I~~----~aF~~~~~---L~~l~l~~ni~~I~~~a--F~~~~~L~~~l~l~~-~l~~I~~-- 290 (329)
T 3sb4_A 227 NLVSLDISKTNATT----IPD----FTFAQKKY---LLKIKLPHNLKTIGQRV--FSNCGRLAGTLELPA-SVTAIEF-- 290 (329)
T ss_dssp TCCEEECTTBCCCE----ECT----TTTTTCTT---CCEEECCTTCCEECTTT--TTTCTTCCEEEEECT-TCCEECT--
T ss_pred CCeEEECCCCCcce----ecH----hhhhCCCC---CCEEECCcccceehHHH--hhCChhccEEEEEcc-cceEEch--
Confidence 89999999999886 222 24533333 7788774 222111 11555 88 888877 5555432
Q ss_pred HHHHHhcCCCCcEEecCCCCC
Q 015056 393 LQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 393 La~aL~~N~~L~~LdLs~N~i 413 (414)
.|.....+|++|+++.|.|
T Consensus 291 --~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 291 --GAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp --TTTTTCTTEEEEEECSSCC
T ss_pred --hhhhCCccCCEEEeCCCcc
Confidence 2334557788888877776
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.35 E-value=0.0055 Score=58.82 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056 212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (414)
Q Consensus 212 ~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL 291 (414)
....+......|.++|++|+|++|.++. + . .+...+....+|
T Consensus 157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~-------------------l-----------~--------~l~~~~~~l~~L 198 (267)
T 3rw6_A 157 CMAATLRIIEENIPELLSLNLSNNRLYR-------------------L-----------D--------DMSSIVQKAPNL 198 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSCCCC-------------------C-----------G--------GGTTHHHHSTTC
T ss_pred HHHHHHHHHHhhCCCCCEEECCCCCCCC-------------------C-----------c--------cchhHHhhCCCC
Confidence 3445555666777899999999996522 1 1 233445677899
Q ss_pred cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (414)
Q Consensus 292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~ 332 (414)
+.|+|++|++.+... +..|... .|++|+|++|.|++
T Consensus 199 ~~L~Ls~N~i~~~~~---l~~l~~l--~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 199 KILNLSGNELKSERE---LDKIKGL--KLEELWLDGNSLCD 234 (267)
T ss_dssp CEEECTTSCCCSGGG---GGGGTTS--CCSEEECTTSTTGG
T ss_pred CEEECCCCccCCchh---hhhcccC--CcceEEccCCcCcc
Confidence 999999999987622 2344433 89999999999985
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.25 E-value=0.0047 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=18.7
Q ss_pred CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
.+|+.|+|++|.|+..-- .++..-++|++|+|++|.+
T Consensus 81 ~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCB
T ss_pred chhhEEECCCCccceeCH----HHhccccCCCEEEeCCCCc
Confidence 455666666666553211 1233345566666666654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.15 E-value=0.004 Score=58.98 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=56.2
Q ss_pred EEEccCC-CCCchhHHHHHHHhccCCCCccEEeccC-CCCCCcccccCCCChhhhhhcCcccCCcceeehH--H----HH
Q 015056 293 SLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H----IA 364 (414)
Q Consensus 293 ~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~-n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~----l~ 364 (414)
.++++++ .|.. +-.|-... +|++|+|++ |.|++ ..- .++.. +.+|++|+|+ . ..
T Consensus 12 ~v~~~~~n~l~~------ip~l~~~~-~L~~L~l~~~n~l~~----~~~----~~~~~---l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 12 GLRCTRDGALDS------LHHLPGAE-NLTELYIENQQHLQH----LEL----RDLRG---LGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CEECCSSCCCTT------TTTSCSCS-CCSEEECCSCSSCCE----ECG----GGSCS---CCCCSEEECCSSCCCEECT
T ss_pred EEEcCCCCCCCc------cCCCCCCC-CeeEEEccCCCCCCC----cCh----hHhcc---ccCCCEEECCCCccceeCH
Confidence 4566776 6643 11222223 788888885 88886 111 23433 3348888884 1 12
Q ss_pred hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI 413 (414)
Q Consensus 365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i 413 (414)
++... -.+|+.|+|++|.|+..--. +-...+|+.|+|++|.+
T Consensus 74 ~~~~~--l~~L~~L~l~~N~l~~~~~~-----~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 74 DAFHF--TPRLSRLNLSFNALESLSWK-----TVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TGGGS--CSCCCEEECCSSCCSCCCST-----TTCSCCCCEEECCSSCC
T ss_pred HHhcC--CcCCCEEeCCCCccceeCHH-----HcccCCceEEEeeCCCc
Confidence 22333 46788888888888753211 12233488888888876
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.57 E-value=0.013 Score=56.23 Aligned_cols=86 Identities=24% Similarity=0.212 Sum_probs=50.4
Q ss_pred cCCcccEEEccCCCCCch-hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHh
Q 015056 287 SGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (414)
Q Consensus 287 sn~sL~~L~Ls~N~L~d~-gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~ 365 (414)
...+|+.|+|++|++..- +...++. ..+ +|++|+|++|.|++| . .+...+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~---~l~-~L~~L~Ls~N~i~~~------~----~l~~l~--------------- 218 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQ---KAP-NLKILNLSGNELKSE------R----ELDKIK--------------- 218 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHH---HST-TCCEEECTTSCCCSG------G----GGGGGT---------------
T ss_pred hCCCCCEEECCCCCCCCCccchhHHh---hCC-CCCEEECCCCccCCc------h----hhhhcc---------------
Confidence 346777777777777551 1111111 233 677777777777762 1 111111
Q ss_pred hccccCCCceeEEEeecccCCc---hhHHHHHHHHhcCCCCcEEe
Q 015056 366 SLGKFFGTSVQVLNIGAIGLGS---SGFRVLQDGVTKELKLVNIN 407 (414)
Q Consensus 366 agvk~L~c~Lq~L~L~~c~lg~---~gcqaLa~aL~~N~~L~~Ld 407 (414)
+-+|++|+|++|.+.. ..-.....++..=++|+.||
T Consensus 219 ------~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 ------GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ------TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ------cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 1257778888888764 12345556777778888887
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=91.70 E-value=0.073 Score=50.88 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=61.7
Q ss_pred CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcce-eehH-----H
Q 015056 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL-LNLS-----H 362 (414)
Q Consensus 289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~-LnLs-----~ 362 (414)
++++.|+|++|++..=.. .++.+.+ +|++|+|++|.|.+.+. - .++.... +|.+ ++++ .
T Consensus 30 ~~l~~L~Ls~N~i~~i~~----~~f~~l~-~L~~L~Ls~N~i~~~i~---~----~~f~~L~---~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK----GAFSGFG-DLEKIEISQNDVLEVIE---A----DVFSNLP---KLHEIRIEKANNLLY 94 (350)
T ss_dssp TTCSEEEEESCCCSEECT----TSSTTCT-TCCEEEEECCTTCCEEC---T----TSBCSCT---TCCEEEEEEETTCCE
T ss_pred CCCCEEEccCCcCCCcCH----HHHcCCC-CCCEEECcCCCCCCccC---h----hHhhcch---hhhhhhcccCCcccc
Confidence 679999999999963221 1244555 89999999999876221 1 1221111 1322 2221 1
Q ss_pred H-HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC-CCC
Q 015056 363 I-AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF-KPI 413 (414)
Q Consensus 363 l-~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~-N~i 413 (414)
+ .++... -.+|+.|++++|+++.... .......++..|++.. |+|
T Consensus 95 l~~~~f~~--l~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 95 INPEAFQN--LPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp ECTTSBCC--CTTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTC
T ss_pred cCchhhhh--ccccccccccccccccCCc----hhhcccchhhhhhhcccccc
Confidence 1 122333 4789999999999976432 1123456678888854 444
No 154
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=88.92 E-value=0.32 Score=47.72 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=44.1
Q ss_pred CcccCCChhhHHHHHhcCCchhhh-hhhcc-CCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC--CcCC
Q 015056 27 PYVYELPADLFDILLTCLPPLALQ-KLQTK-MPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTDQ 101 (414)
Q Consensus 27 P~~~~Lp~~~~~~v~~~Lpp~aL~-~l~~~-~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~--~~~~ 101 (414)
+.+.+||.|++..|+.+|||..|- .+... -..+ .+ .|+ +.|++.|..+|-. ....
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr---~l~~~~-----------------~~w~~~~~~~g~~~~~~~~ 108 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWK---ELVDGA-----------------PLWLLKCQQEGLVPEGSAD 108 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHH---HHHTSH-----------------HHHHHHHHHTTCCCC----
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHH---HHhcCh-----------------HHHHHHhhccCcccccccC
Confidence 457999999999999999998553 22211 0000 01 222 3899999888433 2222
Q ss_pred CCCCchHHHHHHHHHH
Q 015056 102 IEPVDWQQRYWEAHVQ 117 (414)
Q Consensus 102 ~~~~~Wkq~y~E~hlq 117 (414)
....+||++|..++..
T Consensus 109 ~~~~~Wk~~y~~~~~g 124 (297)
T 2e31_A 109 EERDHWQQFYFLSKRR 124 (297)
T ss_dssp -CCSCHHHHHHHHHHC
T ss_pred CCCCChhhhheheecc
Confidence 1268899999988544
No 155
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=84.10 E-value=0.38 Score=40.23 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=32.6
Q ss_pred CChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCCCcCCCCCCchHHH
Q 015056 32 LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQR 110 (414)
Q Consensus 32 Lp~~~~~~v~~~Lpp~aL~~l~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~~~~~~~~~~Wkq~ 110 (414)
.|=+++.-|+++-+|+-|..++..-|. + ++-|. -|++.|+.--|..... ++.+|++|
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~-----L~~dTde----------------LWk~~c~rdF~~~~p~-e~esWRel 70 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHV-----LIEETDQ----------------LWKVHCHRDFKEERPE-EYESWREM 70 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC-----------CCHH----------------HHHHHC----CCSCCC-SSSCHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCcc-----cchhhHH----------------HHHHHHHhHCcccCCC-CCCCHHHH
Confidence 455666677777788877777776663 4 34343 8999999999983322 27899999
Q ss_pred HHH
Q 015056 111 YWE 113 (414)
Q Consensus 111 y~E 113 (414)
|..
T Consensus 71 Y~r 73 (97)
T 4hfx_A 71 YLR 73 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=82.63 E-value=1.8 Score=40.63 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc-ee
Q 015056 280 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR-LL 358 (414)
Q Consensus 280 ~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~-~L 358 (414)
++..+...+.+|+.|+|++|.+..=+... ..+-+ +|++|+|.+| |+. ... .|+....+ |+ .+
T Consensus 217 ~~~~l~~~~~~L~~l~L~~n~i~~I~~~a----F~~~~-~L~~l~l~~n-i~~----I~~----~aF~~~~~---L~~~l 279 (329)
T 3sb4_A 217 DFKLIRDYMPNLVSLDISKTNATTIPDFT----FAQKK-YLLKIKLPHN-LKT----IGQ----RVFSNCGR---LAGTL 279 (329)
T ss_dssp HHHHHHHHCTTCCEEECTTBCCCEECTTT----TTTCT-TCCEEECCTT-CCE----ECT----TTTTTCTT---CCEEE
T ss_pred HHHHHHHhcCCCeEEECCCCCcceecHhh----hhCCC-CCCEEECCcc-cce----ehH----HHhhCChh---ccEEE
Confidence 33444445899999999999875433322 22223 8999999998 664 212 35544444 88 88
Q ss_pred ehH----HHH-hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEe
Q 015056 359 NLS----HIA-ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNIN 407 (414)
Q Consensus 359 nLs----~l~-~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~Ld 407 (414)
+|. .++ .|... ..+|++|++..|.++.-+..+ ....++|++|+
T Consensus 280 ~l~~~l~~I~~~aF~~--c~~L~~l~l~~n~i~~I~~~a----F~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPASVTAIEFGAFMG--CDNLRYVLATGDKITTLGDEL----FGNGVPSKLIY 327 (329)
T ss_dssp EECTTCCEECTTTTTT--CTTEEEEEECSSCCCEECTTT----TCTTCCCCEEE
T ss_pred EEcccceEEchhhhhC--CccCCEEEeCCCccCccchhh----hcCCcchhhhc
Confidence 884 222 22222 458999999999988876443 44566788775
No 157
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=71.43 E-value=5.5 Score=37.88 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=43.4
Q ss_pred CcccCCChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC-Cc---C-
Q 015056 27 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG-FT---D- 100 (414)
Q Consensus 27 P~~~~Lp~~~~~~v~~~Lpp~aL~~l~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~-~~---~- 100 (414)
-.+..||.|++.+|+..|+|.-|-.+...- +--..+ .|+ ..|+++|+.++.. .. .
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~--~~~~~~~~~~-----------------~~w~~~~~~~~~~~~~~~~~~ 77 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTC--RYWRILAEDN-----------------LLWREKCKEEGIDEPLHIKRR 77 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSC--HHHHHHHTCS-----------------HHHHHHHTTTTCCSCCCCCC-
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHh--HHHHhhcCch-----------------hHhhhheeecccccccccccc
Confidence 447899999999999999997554332110 000001 121 2799999766432 10 0
Q ss_pred -----CCCCCchHHHHHHHHHH
Q 015056 101 -----QIEPVDWQQRYWEAHVQ 117 (414)
Q Consensus 101 -----~~~~~~Wkq~y~E~hlq 117 (414)
......||..|.+++-.
T Consensus 78 ~~~~~~~~~~~wk~~~~~~~~~ 99 (445)
T 2ovr_B 78 KVIKPGFIHSPWKSAYIRQHRI 99 (445)
T ss_dssp -CCSSCCCCCHHHHHHHHHHHH
T ss_pred eecCCCccCCcHHHHHhhhhhh
Confidence 00136799999998754
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=65.95 E-value=3.2 Score=41.10 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=24.8
Q ss_pred HHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC
Q 015056 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 328 (414)
Q Consensus 284 ~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n 328 (414)
++..+.+|+.++|.+|++..=+..... .++|+++.|..+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~------~~~L~~l~lp~~ 213 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV------YAGIEEVLLPVT 213 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT------TCCCSEEECCTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe------ecccCEEEeCCc
Confidence 456678888888888877543333221 247777777644
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=58.25 E-value=4.6 Score=33.84 Aligned_cols=10 Identities=10% Similarity=0.322 Sum_probs=5.2
Q ss_pred EEeccCCCCC
Q 015056 322 ILDLSGNSIG 331 (414)
Q Consensus 322 ~LdLs~n~Lt 331 (414)
+.+.+++.|+
T Consensus 12 ~v~Cs~~~L~ 21 (130)
T 3rfe_A 12 LVDCGRRGLT 21 (130)
T ss_dssp EEECCSSCCC
T ss_pred EEEeCCCCCc
Confidence 4555555554
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.98 E-value=10 Score=31.69 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.5
Q ss_pred CccEEeccCCCCC
Q 015056 319 SLSILDLSGNSIG 331 (414)
Q Consensus 319 ~L~~LdLs~n~Lt 331 (414)
.|++|+|++|.+.
T Consensus 56 ~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 56 ALRTAHLGANPWR 68 (130)
T ss_dssp TCCEEECCSSCCB
T ss_pred ccCEEEecCCCee
Confidence 4555555555443
No 161
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=50.98 E-value=12 Score=33.75 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHhcCCc
Q 015056 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPP 46 (414)
Q Consensus 2 ~~~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~~Lpp 46 (414)
-|+.+|.+.|+++| +.+.+..+ -...++|..+...|.++..-
T Consensus 100 ~pv~tL~e~cl~~I-r~l~~~~~--~~~leipr~L~~el~~~~~~ 141 (160)
T 1lm8_V 100 LPVYTLKERCLQVV-RSLVKPEN--YRRLDIVRSLYEDLEDHPNV 141 (160)
T ss_dssp CCCCCHHHHHHHHH-HHHSCGGG--GGGSCSCHHHHHHHHSCCCH
T ss_pred ccchhHHHHHHHHH-HHhcChhh--cccccccHHHHHHHHHChHH
Confidence 47899999999999 77775433 33588999999998866543
No 162
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=46.56 E-value=13 Score=32.36 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=34.2
Q ss_pred ccCcccccCCCchHHHHHHHhccCCC--CcCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 015056 72 ENGRKRGRYGNFNTVWKKLFKTRWSG--FTDQIEPVDWQQRYWEAHVQGCLDEAAELVV 128 (414)
Q Consensus 72 ~~~~kr~r~~~~~~~Wkrl~~~RW~~--~~~~~~~~~Wkq~y~E~hlq~~l~eaae~a~ 128 (414)
.++|||.|.|.|+.|=.+..|+-.|+ ++.. ..+=-.-|-+.=.+.+-.||++.|-
T Consensus 24 ~~k~~~~~~esy~~YIyKVLKQVhpd~gISsk--Am~ImnSfvnDiferIA~EAs~La~ 80 (123)
T 2nqb_D 24 DKKKKRKRKESYAIYIYTVLKQVHPDTGISSK--AMSIMNSFVNDIFERIAAEASRLAH 80 (123)
T ss_dssp -----CCCCCCSHHHHHHHHHHHCTTCEECHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhCCCCCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999988 4433 2222233545555556666766654
No 163
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=41.64 E-value=15 Score=31.89 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.1
Q ss_pred cccCcccccCCCchHHHHHHHhccCCC--CcCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 015056 71 FENGRKRGRYGNFNTVWKKLFKTRWSG--FTDQIEPVDWQQRYWEAHVQGCLDEAAELVV 128 (414)
Q Consensus 71 ~~~~~kr~r~~~~~~~Wkrl~~~RW~~--~~~~~~~~~Wkq~y~E~hlq~~l~eaae~a~ 128 (414)
..++|||.|.|.|+.|=.+..|+-.|+ ++.. ..+=-.-|-+.=.+.+-.||++.|-
T Consensus 26 ~~~k~~~~~~esy~~YIyKVLKQVhpd~gISsk--Am~ImnSfvnDiferIA~EAs~La~ 83 (126)
T 1tzy_B 26 GDKKRKKSRKESYSIYVYKVLKQVHPDTGISSK--AMGIMNSFVNDIFERIAGEASRLAH 83 (126)
T ss_dssp --------CCCCCHHHHHHHHHHHCTTCEECHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccccHHHHHHHHHHHhCCCCCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999988 4433 2222233444444556666666553
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=40.85 E-value=9 Score=37.83 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=10.7
Q ss_pred CCceeEEEeecccCCc
Q 015056 372 GTSVQVLNIGAIGLGS 387 (414)
Q Consensus 372 ~c~Lq~L~L~~c~lg~ 387 (414)
+|+|++|.+.+|.+..
T Consensus 344 ~~~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 344 NTGIKEVKVEGTTPPQ 359 (401)
T ss_dssp SSCCCEEEECCSSCCB
T ss_pred CCCCCEEEEcCCCCcc
Confidence 5677777777766544
No 165
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=33.01 E-value=29 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.3
Q ss_pred CcccCCChhhHHHHHhcCCchhhh
Q 015056 27 PYVYELPADLFDILLTCLPPLALQ 50 (414)
Q Consensus 27 P~~~~Lp~~~~~~v~~~Lpp~aL~ 50 (414)
+.+.+||.|++..|+.+||+.-+-
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~ 30 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELL 30 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHH
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHH
Confidence 457999999999999999987443
No 166
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=30.82 E-value=67 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHh
Q 015056 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (414)
Q Consensus 4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~ 42 (414)
+|||..||=.+|-+++. +. . .-..||+.+.+.+.+
T Consensus 1 v~sLQHLCR~~I~~~~~-~~--~-~~LpLP~~Lk~yL~e 35 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHLD-SY--E-KVTQLPGPIREFLDQ 35 (40)
T ss_pred CccHHHHHHHHHHHHcC-CC--c-ccCCCCHHHHHHHHH
Confidence 69999999999999982 11 1 245677777776653
No 167
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=25.01 E-value=28 Score=32.99 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.8
Q ss_pred cccCCChh----hHHHHHhcCCchhhhhh
Q 015056 28 YVYELPAD----LFDILLTCLPPLALQKL 52 (414)
Q Consensus 28 ~~~~Lp~~----~~~~v~~~Lpp~aL~~l 52 (414)
.+..||+| ++.+|+..|+|.-|-..
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~ 38 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAA 38 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHH
Confidence 35789999 99999999999866543
Done!