BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015057
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
+ ++AG + H VA+ +WGR E GQLGHGD R PT +S L ++I
Sbjct: 6 VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
G HTV ++ G + ++GW G+LG G+ + P P++ L + ACG D
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG-DSHCL 122
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
++EG + + G Q GQLG G +T+DS V P+ I A G I VA
Sbjct: 123 AVTMEG-EVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKMVA 167
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
G HT AV G +Y WG+G YG LG ++ D VP RV + ++++ G
Sbjct: 168 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM----SMVACGWR 223
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
++ + G LY +G K +GD D + P L LS + + G H + +D
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
WG ++G++G G + S P +V + V+ V+CG+ H+L + +R NV
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 338
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 139/307 (45%), Gaps = 29/307 (9%)
Query: 30 WDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQ 89
W GR +L +P ++ L G+ I+ +A C HC+AV +EG +WGRN+ GQ
Sbjct: 83 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA--CGDSHCLAVTMEGEVQSWGRNQNGQ 140
Query: 90 LGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN 149
LG GD P + +IK AG HT VTEDG+ +GW ++G LG G +
Sbjct: 141 LGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD 200
Query: 150 EIEPSPVRCLVSE-VTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208
+ P V E ++ ACG T+ +S ++ G +YGQLGHG
Sbjct: 201 RLVPERVTSTGGEKMSMVACGWRHTISVSY--SGALYTYGWSKYGQLGHGD--------- 249
Query: 209 SVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD 268
E P + AL+ I +++ G HT+A+ S G +Y WG+ +G++G D
Sbjct: 250 -----LEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 304
Query: 269 EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYP 322
+ P +V V+ +S G ++ ++ WG+ N D +P
Sbjct: 305 QCSPVQVRFPDDQKVVQ----VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Query: 323 KPLMDLS 329
K + LS
Sbjct: 361 KIIEALS 367
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 42/322 (13%)
Query: 111 KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACG 169
K+ AG SH+V + ++G + GQLG G + P+ + L ++ + CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 170 ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGE 229
AD TV S G + + G +G+LGHG ++ T P I AL G
Sbjct: 65 ADHTVAYSQ-SGMEVYSWGWGDFGRLGHGNSSDLFT--------------PLPIKALHGI 109
Query: 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV 289
I ++ACG +H +AV +G V +WG G+LG + +D VP+++ F+ + +
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI----KM 165
Query: 290 ISAGSVNSSCTAGGGQLY--MWGKLKNNG----DDWMYPKPLMDLSGWNLRCMDSGNMHH 343
++AG+ +++ G LY WG+ N G D + P+ + G + + G H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 225
Query: 344 F-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVD- 401
V + ++G ++YG+LG+G + +P K++ L + ++ G+ H++ +
Sbjct: 226 ISVSYSGALYTYGWSKYGQLGHGDL--EDHLIPHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 402 ------------RTNVGERLDQ 411
+ VG LDQ
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQ 305
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
+ ++AG + H VA+ +WGR E GQLGHGD R PT +S L ++I
Sbjct: 18 VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 75
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
G HTV ++ G + ++GW G+LG G+ + P P++ L + ACG D
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG-DSHCL 134
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
++EG + + G Q GQLG G +T+DS V P+ I A G I VA
Sbjct: 135 AVTMEG-EVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKMVA 179
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
G HT AV G +Y WG+G YG LG ++ D VP RV + ++++ G
Sbjct: 180 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM----SMVACGWR 235
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
++ + G LY +G K +GD D + P L LS + + G H + +D
Sbjct: 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
WG ++G++G G + S P +V + V+ V+CG+ H+L + +R NV
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 350
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 132/286 (46%), Gaps = 23/286 (8%)
Query: 30 WDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQ 89
W GR +L +P ++ L G+ I+ +A C HC+AV +EG +WGRN+ GQ
Sbjct: 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA--CGDSHCLAVTMEGEVQSWGRNQNGQ 152
Query: 90 LGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN 149
LG GD P + +IK AG HT VTEDG+ +GW ++G LG G +
Sbjct: 153 LGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD 212
Query: 150 EIEPSPVRCLVSE-VTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208
+ P V E ++ ACG T+ +S ++ G +YGQLGHG
Sbjct: 213 RLVPERVTSTGGEKMSMVACGWRHTISVSY--SGALYTYGWSKYGQLGHGD--------- 261
Query: 209 SVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD 268
E P + AL+ I +++ G HT+A+ S G +Y WG+ +G++G D
Sbjct: 262 -----LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 316
Query: 269 EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN 314
+ P +V V+ +S G ++ ++ WG+ N
Sbjct: 317 QCSPVQVRFPDDQKVVQ----VSCGWRHTLAVTERNNVFAWGRGTN 358
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 42/322 (13%)
Query: 111 KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACG 169
K+ AG SH+V + ++G + GQLG G + P+ + L ++ + CG
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 170 ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGE 229
AD TV S G + + G +G+LGHG ++ T P I AL G
Sbjct: 77 ADHTVAYSQ-SGMEVYSWGWGDFGRLGHGNSSDLFT--------------PLPIKALHGI 121
Query: 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV 289
I ++ACG +H +AV +G V +WG G+LG + +D VP+++ F+ + +
Sbjct: 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI----KM 177
Query: 290 ISAGSVNSSCTAGGGQLY--MWGKLKNNG----DDWMYPKPLMDLSGWNLRCMDSGNMHH 343
++AG+ +++ G LY WG+ N G D + P+ + G + + G H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 237
Query: 344 F-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVD- 401
V + ++G ++YG+LG+G + +P K++ L + ++ G+ H++ +
Sbjct: 238 ISVSYSGALYTYGWSKYGQLGHGDL--EDHLIPHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 402 ------------RTNVGERLDQ 411
+ VG LDQ
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQ 317
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
+ ++AG + H VA+ +WGR E GQLGHGD R PT +S L ++I
Sbjct: 6 VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
G HTV ++ G + ++GW G+LG G+ + P P++ L + ACG D
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG-DSHCL 122
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
++EG + + G Q GQLG G +T+DS V P+ I A G I VA
Sbjct: 123 AVTMEG-EVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKMVA 167
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
G HT AV G +Y WG+G YG LG ++ D VP RV + ++++ G
Sbjct: 168 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM----SMVACGWR 223
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
++ + G LY +G K +GD D + P L LS + + G H + +D
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
WG ++G++G G + S P +V + V+ V+CG+ H+L + +R NV
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 338
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 139/307 (45%), Gaps = 29/307 (9%)
Query: 30 WDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQ 89
W GR +L +P ++ L G+ I+ +A C HC+AV +EG +WGRN+ GQ
Sbjct: 83 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA--CGDSHCLAVTMEGEVQSWGRNQNGQ 140
Query: 90 LGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN 149
LG GD P + +IK AG HT VTEDG+ +GW ++G LG G +
Sbjct: 141 LGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD 200
Query: 150 EIEPSPVRCLVSE-VTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208
+ P V E ++ ACG T+ +S ++ G +YGQLGHG
Sbjct: 201 RLVPERVTSTGGEKMSMVACGWRHTISVSY--SGALYTYGWSKYGQLGHGD--------- 249
Query: 209 SVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD 268
E P + AL+ I +++ G HT+A+ S G +Y WG+ +G++G D
Sbjct: 250 -----LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 304
Query: 269 EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYP 322
+ P +V V+ +S G ++ ++ WG+ N D +P
Sbjct: 305 QCSPVQVRFPDDQKVVQ----VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Query: 323 KPLMDLS 329
K + LS
Sbjct: 361 KIIEALS 367
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 42/322 (13%)
Query: 111 KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACG 169
K+ AG SH+V + ++G + GQLG G + P+ + L ++ + CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 170 ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGE 229
AD TV S G + + G +G+LGHG ++ T P I AL G
Sbjct: 65 ADHTVAYSQ-SGMEVYSWGWGDFGRLGHGNSSDLFT--------------PLPIKALHGI 109
Query: 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV 289
I ++ACG +H +AV +G V +WG G+LG + +D VP+++ F+ + +
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI----KM 165
Query: 290 ISAGSVNSSCTAGGGQLY--MWGKLKNNG----DDWMYPKPLMDLSGWNLRCMDSGNMHH 343
++AG+ +++ G LY WG+ N G D + P+ + G + + G H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 225
Query: 344 F-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVD- 401
V + ++G ++YG+LG+G + +P K++ L + ++ G+ H++ +
Sbjct: 226 ISVSYSGALYTYGWSKYGQLGHGDL--EDHLIPHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 402 ------------RTNVGERLDQ 411
+ VG LDQ
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQ 305
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 167/357 (46%), Gaps = 33/357 (9%)
Query: 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
+ ++AG + H VA+ +WGR E GQLGHGD R PT +S L ++I
Sbjct: 8 VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 65
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
G HTV ++ G + ++GW G+LG G+ + P P++ L + ACG
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC-- 123
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
L+ + + G Q GQLG G +T+DS V P+ I A G I VA
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKXVA 169
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
G HT AV G +Y WG+G YG LG ++ D VP RV + + ++ G
Sbjct: 170 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV----TSTGGEKXSXVACGWR 225
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
++ + G LY +G K +GD D + P L LS + + G H + +D
Sbjct: 226 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSD 285
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
WG ++G++G G + S P +V + V+ V+CG+ H+L + +R NV
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 340
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 136/307 (44%), Gaps = 29/307 (9%)
Query: 30 WDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQ 89
W GR +L +P ++ L G+ I+ +A C HC+AV EG +WGRN+ GQ
Sbjct: 85 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA--CGDSHCLAVTXEGEVQSWGRNQNGQ 142
Query: 90 LGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN 149
LG GD P + +IK AG HT VTEDG+ +GW ++G LG G +
Sbjct: 143 LGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD 202
Query: 150 EIEPSPVRCLVSE-VTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208
+ P V E + ACG T+ +S ++ G +YGQLGHG
Sbjct: 203 RLVPERVTSTGGEKXSXVACGWRHTISVSY--SGALYTYGWSKYGQLGHGD--------- 251
Query: 209 SVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD 268
E P + AL+ I +++ G HT A+ S G +Y WG+ +G++G D
Sbjct: 252 -----LEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLD 306
Query: 269 EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYP 322
+ P +V V+ +S G ++ ++ WG+ N D +P
Sbjct: 307 QCSPVQVRFPDDQKVVQ----VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 362
Query: 323 KPLMDLS 329
K + LS
Sbjct: 363 KIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 19/269 (7%)
Query: 43 NLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPT 102
++ +PT L + V I+ VA HC+A+ EG Y+WG E G+LGHG++ DRP
Sbjct: 92 SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPR 151
Query: 103 IVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS- 161
++ L ++ AG +H+ VT G+ +G ++G+LG ++++P V L
Sbjct: 152 VIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211
Query: 162 EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPR 221
V ACG+ L + ++ + G YG+LG G + P
Sbjct: 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV--------------PM 257
Query: 222 AIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRN 281
I +L G +VKV CG+ +VA+ G VYTWG G Y RLGH PR+V Q
Sbjct: 258 KIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317
Query: 282 NVLPPEAVISAGSVNSSCTAGGGQLYMWG 310
V+ I+ GS++ C G++Y WG
Sbjct: 318 KVI----AIATGSLHCVCCTEDGEVYTWG 342
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 30/339 (8%)
Query: 77 GRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136
G Y WG N RGQLG + + PT L+ + + G VT DG A G+
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 137 NKHGQLGSGSIRNEIEPS---PVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYG 193
G+LG G + P+ ++ + + A G + LSS EG + + G + G
Sbjct: 80 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS-EG-EVYSWGEAEDG 137
Query: 194 QLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTW 253
+LGHG + + RPR I +L G +V VA G H+ V + G +YTW
Sbjct: 138 KLGHGNRSPCD--------------RPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTW 183
Query: 254 GFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMW---- 309
G G YGRLGH + +D+ P+ V+ Q + V+ + +G + C ++ W
Sbjct: 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVV--DIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 310 -GKLKNNGDD-WMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCI-SWGHAQYGELGYGP 366
GKL G D P + L+G + ++ G+ S + +WG Y LG+G
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301
Query: 367 YGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
P++V L+G VI++A G H + + V
Sbjct: 302 --DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEV 338
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 34/339 (10%)
Query: 72 AVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAG--AGRSHTVVVTEDG 129
AV +G+ Y G G+LG G PT++ + IKK +G H + ++ +G
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 130 NSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAG 188
++G + G+LG G+ P + L EV A G + +++ + G
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA--GDLYTWG 184
Query: 189 LPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN--HTVAVDS 246
+YG+LGH DS E Q +P+ + AL G +V +ACG+ T+ +
Sbjct: 185 KGRYGRLGH--------SDS------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230
Query: 247 KGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQL 306
V++WG G YG+LG VP ++D V+ E GS S G +
Sbjct: 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE----CGSQFSVALTKSGAV 286
Query: 307 YMWGK-----LKNNGDDWM-YPKPLMDLSGWNLRCMDSGNMHHF-VGADSSCISWGHAQY 359
Y WGK L + DD + P+ + L G + + +G++H D +WG
Sbjct: 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDE 346
Query: 360 GELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLV 398
G+LG G + P+ V L+G V VACG H+L
Sbjct: 347 GQLGDGT--TNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 34/285 (11%)
Query: 129 GNSLAFGW--NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILN 186
G+ +GW N GQLG P+P L + G + T++ + +G
Sbjct: 18 GSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYAT 77
Query: 187 AGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVAC--GTNHTVAV 244
Y E+ P + ++ I KVA G H +A+
Sbjct: 78 G---------------YGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122
Query: 245 DSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGG 304
S+G VY+WG G+LGH + PR ++ + V+ ++AG +S+C G
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD----VAAGGAHSACVTAAG 178
Query: 305 QLYMWGKLK------NNGDDWMYPKPLMDLSGW---NLRCMDSGNMHHFVGADSSCISWG 355
LY WGK + ++ +D + PK + L G ++ C + D + SWG
Sbjct: 179 DLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238
Query: 356 HAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIV 400
YG+LG G G +P K+D L G+ V+ V CG S+ +
Sbjct: 239 DGDYGKLGRG--GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT 281
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 47 PTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE 106
P + L G+++ VAAG H V G YTWG+ G+LGH D + +P +V
Sbjct: 150 PRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207
Query: 107 LSKYKIKK--AGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EV 163
L +++ G+G + T+ +T+D ++G +G+LG G P + L V
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGV 267
Query: 164 TATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYN------------------- 204
CG+ F+V L+ + ++ G Y +LGHG+D+
Sbjct: 268 VKVECGSQFSVALT--KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG 325
Query: 205 -------TKDSSVKL------------AYEAQPRPRAIAALAGETIVKVACGTNHTVA 243
T+D V A RPR +AAL G+ + +VACG+ HT+A
Sbjct: 326 SLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 37 KGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96
+G DG V P ++ L G+ + V C S VA+ G YTWG+ + +LGHG
Sbjct: 247 RGGSDGCKV-PMKIDSLTGLGV--VKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD 303
Query: 97 QRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPV 156
RP V L K+ G H V TEDG +G N GQLG G+ P V
Sbjct: 304 HVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Query: 157 RCLV-SEVTATACGADFTV-WLSS 178
L +V ACG+ T+ W +S
Sbjct: 364 AALQGKKVNRVACGSAHTLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 23/367 (6%)
Query: 49 RLRP-LVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSEL 107
R +P LV + V A H V + G+ Y++G N+ G LG ++
Sbjct: 49 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 108
Query: 108 SKYKIKKAGAGRSHTVVVTEDGNSLAFG--WNKHGQLGS-GSIRNEIEPSPVRCLVSEVT 164
+ K+ + AG SHT +T+DG +G + +G +G ++ + P V+ V V
Sbjct: 109 LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP-VV 167
Query: 165 ATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA 224
A G D V L++ + G + GQLG + + L P+ +
Sbjct: 168 KVASGNDHLVMLTA--DGDLYTLGCGEQGQLGR-VPELFANRGGRQGLERLLVPKCVMLK 224
Query: 225 ALAGETIVKVA---CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRN 281
+ V+ CG T A+ +G+VY +G Y +LG + ++P+ + F+
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK-- 282
Query: 282 NVLPPEAVISAGSVNSSCTAGGGQLYMWGK-------LKNNGDDWMYPKPLMDLSGW-NL 333
N S G ++ C G+ Y G+ L ++ P + L ++
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV 342
Query: 334 RCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGY 393
C ++ + V D +WG +LG G S + LE V+SV+ G
Sbjct: 343 AC--GASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400
Query: 394 GHSLVIV 400
H++++V
Sbjct: 401 QHTVLLV 407
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 119 RSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSS 178
RSH+ TE G L G GQLG G E + + + +V G TV LS
Sbjct: 20 RSHS---TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLS- 75
Query: 179 VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT 238
+ + + G G LG +D+SV+ E P + E +V+V+ G
Sbjct: 76 -KSGQVYSFGCNDEGALG---------RDTSVE-GSEMVPGKVELQ----EKVVQVSAGD 120
Query: 239 NHTVAVDSKGYVYTWG 254
+HT A+ G V+ WG
Sbjct: 121 SHTAALTDDGRVFLWG 136
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 23/367 (6%)
Query: 49 RLRP-LVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSEL 107
R +P LV + V A H V + G+ Y++G N+ G LG ++
Sbjct: 38 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 97
Query: 108 SKYKIKKAGAGRSHTVVVTEDGNSLAFG--WNKHGQLGS-GSIRNEIEPSPVRCLVSEVT 164
+ K+ + AG SHT +T+DG +G + +G +G ++ + P V+ V V
Sbjct: 98 LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP-VV 156
Query: 165 ATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA 224
A G D V L++ + G + GQLG + + L P+ +
Sbjct: 157 KVASGNDHLVMLTA--DGDLYTLGCGEQGQLGR-VPELFANRGGRQGLERLLVPKCVMLK 213
Query: 225 ALAGETIVKVA---CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRN 281
+ V+ CG T A+ +G+VY +G Y +LG + ++P+ + F+
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK-- 271
Query: 282 NVLPPEAVISAGSVNSSCTAGGGQLYMWGK-------LKNNGDDWMYPKPLMDLSGW-NL 333
N S G ++ C G+ Y G+ L ++ P + L ++
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV 331
Query: 334 RCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGY 393
C ++ + V D +WG +LG G S + LE V+SV+ G
Sbjct: 332 AC--GASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 389
Query: 394 GHSLVIV 400
H++++V
Sbjct: 390 QHTVLLV 396
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 119 RSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSS 178
RSH+ TE G L G GQLG G E + + + +V G TV LS
Sbjct: 9 RSHS---TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLS- 64
Query: 179 VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT 238
+ + + G G LG +D+SV+ E P + E +V+V+ G
Sbjct: 65 -KSGQVYSFGCNDEGALG---------RDTSVE-GSEMVPGKVELQ----EKVVQVSAGD 109
Query: 239 NHTVAVDSKGYVYTWG 254
+HT A+ G V+ WG
Sbjct: 110 SHTAALTDDGRVFLWG 125
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 33/269 (12%)
Query: 58 IRFVAAGCVSCHCVAVDVEGRCYTWG--RNERGQLG-HGDKIQ-RDRPTIVSELSKYKIK 113
++ A +SC A+ G Y WG R G LG + DKI+ + P V SKY I
Sbjct: 151 VQLAATDNMSC---ALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIV 207
Query: 114 KAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIR----NEIEPSPVRCLVSEVTATACG 169
+ G+ H + + E+G A+G + QLG + ++P P + V A G
Sbjct: 208 QLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG--LRHVKYIASG 265
Query: 170 ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGE 229
+ L+ + +++ GL Q+GQ G D E D ++ +P+ +A
Sbjct: 266 ENHCFALT--KDNKLVSWGLNQFGQCGVSEDVE----DGALVT------KPKRLALPDNV 313
Query: 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLG-HREQKDEWV-------PRRVDVFQRN 281
I +A G +H++ + G +Y+ G +G ++ E+ R V + +
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKL 373
Query: 282 NVLPPEAVISAGSVNSSCTAGGGQLYMWG 310
N +P ++AGS +S A G Y WG
Sbjct: 374 NNVPKFKSVAAGSHHSVAVAQNGIAYSWG 402
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 27/251 (10%)
Query: 69 HCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE--LSKYKIKKAGAGRSHTVVVT 126
H + +D EG + WG ++ QLG ++R R + +K +G +H +T
Sbjct: 215 HILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPFGLRHVKYIASGENHCFALT 273
Query: 127 EDGNSLAFGWNKHGQLGSGSIRNEIE-----PSPVRCLVSE---VTATACGADFTVWLSS 178
+D +++G N+ GQ G + ++E P R + + + + A G ++ LS
Sbjct: 274 KDNKLVSWGLNQFGQCG---VSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS- 329
Query: 179 VEGASILNAGLPQYGQLGHGTDN--EYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVAC 236
+ + + G ++G DN EY KD K A P P + + VA
Sbjct: 330 -QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA--RAVPLPTKLNNVP--KFKSVAA 384
Query: 237 GTNHTVAVDSKGYVYTWGFGGYGRLGHRE-QKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
G++H+VAV G Y+WGFG +G + D VP R+ +N +I G
Sbjct: 385 GSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRI----KNTATQDHNIILVGCG 440
Query: 296 NSSCTAGGGQL 306
+GG +L
Sbjct: 441 GQFSVSGGVKL 451
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 153/413 (37%), Gaps = 90/413 (21%)
Query: 45 VSPTRLRPLVGVD-IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD--------- 94
V RL P + D + ++ H +A+D E ++WG N+ G LG
Sbjct: 53 VKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKD 112
Query: 95 ----------------------KIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSL 132
KI R+ ++E +K+ + A + + + +G
Sbjct: 113 MDADDSSDDEDGDLNELESTPAKIPRESFPPLAE--GHKVVQLAATDNMSCALFSNGEVY 170
Query: 133 AFGWNK--HGQLGSGSIRNEIEPSPVRCLV---SEVTATACGADFTVWLSSVEGASILNA 187
A+G + G LG + +I+ +P + + A G D ++L E +
Sbjct: 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD--EEGMVFAW 228
Query: 188 GLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSK 247
G Q QLG + K PRP + + +A G NH A+
Sbjct: 229 GNGQQNQLGRKVMERFRLK--------TLDPRPFGL-----RHVKYIASGENHCFALTKD 275
Query: 248 GYVYTWGFGGYGRLGHREQKDEWV----PRRVDVFQRNNVLPPEAV---ISAGSVNSSCT 300
+ +WG +G+ G E ++ P+R+ LP V I+AG +S
Sbjct: 276 NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL-------ALPDNVVIRSIAAGEHHSLIL 328
Query: 301 AGGGQLYMWGKL--------KNNGDDWMY----------PKPLMDLSGWNLRCMDSGNMH 342
+ G LY G+L K+N ++ Y P P + + + +G+ H
Sbjct: 329 SQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHH 388
Query: 343 HF-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVD--ILEGMHVISVACG 392
V + SWG + +G GP+ + + +P ++ + ++I V CG
Sbjct: 389 SVAVAQNGIAYSWGFGETYAVGLGPF-EDDTEVPTRIKNTATQDHNIILVGCG 440
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 18/196 (9%)
Query: 218 PRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFG--GYGRLGHREQ--KDEWVPR 273
PR G +V++A N + A+ S G VY WG G LG + K + P
Sbjct: 137 PRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 274 RVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN--GDDWM--YPKPLMDLS 329
+V F + N++ ++ G + G ++ WG + N G M + +D
Sbjct: 197 KVPTFSKYNIVQ----LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252
Query: 330 GWNLR---CMDSGNMHHF-VGADSSCISWGHAQYGELGYGPYGQKSSAM--PKKVDILEG 383
+ LR + SG H F + D+ +SWG Q+G+ G + + + PK++ + +
Sbjct: 253 PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN 312
Query: 384 MHVISVACGYGHSLVI 399
+ + S+A G HSL++
Sbjct: 313 VVIRSIAAGEHHSLIL 328
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 23 LFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTW 82
+F + D+ G +DGN +P L + G +A+G + H V + G+ +T
Sbjct: 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASG--ADHLVILTTAGKVFTV 203
Query: 83 GRNERGQLG---------HGDKIQRD--RPTIVSELSKYKIKKAGAGRSHTVVVTEDGNS 131
G E+GQLG G + +RD RPT + +++ K +A ++ + E
Sbjct: 204 GCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI-ITRAKPFEAIWATNYCTFMRESQTQ 262
Query: 132 L--AFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGL 189
+ A G N QL + E +P++ + ++ A G TV L++ S++ G
Sbjct: 263 VIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVV--GR 320
Query: 190 PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGY 249
P+YG+LG G VK E +P + L E IV V CG + AV G
Sbjct: 321 PEYGRLGLG----------DVKDVVE---KPTIVKKLT-EKIVSVGCGEVCSYAVTIDGK 366
Query: 250 VYTWGFGGYGRLGHREQKDEWVP 272
+Y+WG G +LG + DE P
Sbjct: 367 LYSWGSGVNNQLGVGDGDDELEP 389
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 109/288 (37%), Gaps = 55/288 (19%)
Query: 63 AGCVSC---HCVAVDVEGRCYTWG--RNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
A C+S H + +GR + WG R+ G +G I ++ T + + +
Sbjct: 129 ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL--TIDGNKRTPIDLMEGTVCCSIAS 186
Query: 118 GRSHTVVVTEDGNSLAFGWNKHGQLGSGS-----------IRNEIEPSPVRCLVSEVTAT 166
G H V++T G G + GQLG S R+ + P+ + ++
Sbjct: 187 GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA 246
Query: 167 ACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAAL 226
++ ++ + I GL + QL H E + + A+ +
Sbjct: 247 IWATNYCTFMRESQTQVIWATGLNNFKQLAH-----------------ETKGKEFALTPI 289
Query: 227 AGET--IVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVL 284
E I +A G +HTV + + G YGRLG + K DV ++ ++
Sbjct: 290 KTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVK--------DVVEKPTIV 341
Query: 285 PP--EAVISA--GSVNSSCTAGGGQLYMWGKLKNN------GDDWMYP 322
E ++S G V S G+LY WG NN GDD + P
Sbjct: 342 KKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 30/168 (17%)
Query: 248 GYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLP----PEAV-ISAGSVNSSCTAG 302
G V G G G+LG E D+ +R + P P+AV ISAG +++
Sbjct: 43 GNVLVCGNGDVGQLGLGE----------DILERKRLSPVAGIPDAVDISAGGMHNLVLTK 92
Query: 303 GGQLYMWG------KLKNNGDDWMYPKP-LMDLSGWNLRCMDSGNMHHF-VGADSSCISW 354
G +Y +G ++ +D KP L+DL G L C+ +G+ H + D +W
Sbjct: 93 SGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKAL-CISAGDSHSACLLEDGRVFAW 151
Query: 355 GHAQ--YGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIV 400
G + +G +G G K + +D++EG S+A G H +++
Sbjct: 152 GSFRDSHGNMGLTIDGNKRTP----IDLMEGTVCCSIASGADHLVILT 195
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 47 PTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIV-- 104
PT ++ L + V+ GC AV ++G+ Y+WG QLG GD P +V
Sbjct: 338 PTIVKKLTE---KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394
Query: 105 -SELSKYKIKKAGAGRSHTVVVTED 128
+ K+ + +G G+ +V D
Sbjct: 395 KNTQGKHMLLASGGGQHAIFLVKAD 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,151,767
Number of Sequences: 62578
Number of extensions: 588536
Number of successful extensions: 1660
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 47
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)